Psyllid ID: psy4890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MRTGHYLNAWLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGYNRTVKIRARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEINSDPVRYWRSYVTDMK
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHccEEEEEEEEEEcccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHccccccEEEccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccccccEEEEEEccEEccccccccccccccccccEEEEEEccccccEEEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHccccccccccccEEEEcccccHHHHHEcccHHHHHHHccHHHHHHHcccEcccccccccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEEEEEEccccccccccccccEEEEEEcccEEcccHccccccccccccEEEEEEEEcccccccEEEEEEcccccccccccEEEEEHHHHHHHHccccccccccEEEEccccHHHHHHHHHHHcccccccccEEccccEEEcc
Coil and Loop (DISEMBL)
mrtghylnawlklperkqnfnicsIPYLVLTLLQILLWTGKKLFLFAMYCVCGYNRTVKIRARYYKLIEleekpsgsnvydtftipevdtdeeekpdwwSLYYSSVYSSGVVEKIQQIQRENEERKtirlckccnivppknelelvpefEHFADVLQTFDFYYgklfsnnkntlaEMKVgsfkgnvmfypadrdhlvtfsgkplsngalqesidnekvNVTIRVYIVRAyglhpkdkdgkcdpyivlktgsveindrenyvtnqinpyfgrhfeiqgsfptdakltveikdhdsvskddyigmTEMDLESRfysrhrgscarwtsdlevsgsspgevlpgitlqsgeinsdpvrYWRSYVTDMK
Flexible Loop (DISEMBL)
MRTGHYLNAWLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGYNRTVKIRARYYKLIeleekpsgsnvydtFTIPevdtdeeekpdWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLsngalqesidnekvnvTIRVYIVRayglhpkdkdgkcdpYIVLKTgsveindrenYVTNQINPYFGRHFEIQGSFPTDAKLTVEikdhdsvskddyigMTEMDLESRFYSRHRGSCARWTsdlevsgsspgEVLPgitlqsgeinsdpvrywrsyvtdmk
Low Complexity Region (SEG)
MRTGHYLNAWLKLPERKQNFNICSIPYlvltllqillWTGKKLFLFAMYCVCGYNRTVKIRARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWslyyssvyssgvvEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEINSDPVRYWRSYVTDMK
Disordered region (IsUnstruct)
****HYLNAWLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGYNRTVKIRARYYKLIELEEKPSGSNVYDTFTIPEVDT***EKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTS***************ITL****I**DPVRYWRSYV****
Disordered Region (DISOPRED)
*****YLNAWLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCG*****************************************KPDWWSLYYSSVY*********************************NELELVPEFEHFADVLQTFDFY*****************GSFKGNVMF****************************KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWT************VLPGITL******SDPVRYWRSYVTDM*
Disordered Region (DISEMBL)
MRTGHYLNAWLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGYNRTVKIRARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEINSDPVRYWRSYVTDMK
Disordered Region (DISPRO)
**TGHYLNAWLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGYNRTVKIRARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKL*******LAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEINSDPVRYWRSYVTDMK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTGHYLNAWLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGYNRTVKIRARYYKLIELEEKPSGSNVYDTFTIPEVDTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEINSDPVRYWRSYVTDMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q2WGJ9	1857	Fer-1-like protein 6 OS=H	yes	N/A	0.675	0.132	0.356	6e-38
Q9ERC5	1993	Otoferlin OS=Rattus norve	no	N/A	0.489	0.089	0.433	6e-37
Q9HC10	1997	Otoferlin OS=Homo sapiens	no	N/A	0.489	0.089	0.433	6e-37
Q5SPC5	1992	Otoferlin OS=Danio rerio	no	N/A	0.489	0.089	0.425	7e-37
Q9ESF1	1997	Otoferlin OS=Mus musculus	no	N/A	0.489	0.089	0.433	8e-37
A3KGK3	1992	Fer-1-like protein 4 OS=M	no	N/A	0.689	0.126	0.329	2e-33
A9Z1Z3	1794	Fer-1-like protein 4 OS=H	no	N/A	0.689	0.139	0.342	8e-33
Q9NZM1	2061	Myoferlin OS=Homo sapiens	no	N/A	0.571	0.100	0.365	1e-31
Q69ZN7	2048	Myoferlin OS=Mus musculus	no	N/A	0.571	0.101	0.356	6e-31
B3DLH6	1929	Myoferlin OS=Xenopus trop	no	N/A	0.568	0.107	0.354	7e-31

>sp|Q2WGJ9|FR1L6_HUMAN Fer-1-like protein 6 OS=Homo sapiens GN=FER1L6 PE=2 SV=2

 Score =  158 bits (399), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 143/283 (50%), Gaps = 37/283 (13%)

Query: 88   VDTDEEEKPDWWSLYYSSVY-SSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKN----- 141
             D   E   DWWS YY+S+  +    E+  + ++ N E K   +       P K      
Sbjct: 1203 ADESAENVIDWWSKYYASLKKAQKAKERNPKGKKGNTEAKPDEVVVDIEDGPKKKKDKML 1262

Query: 142  ------------------ELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFK 183
                              + +L  EF +F D ++TF+ + GK   ++     +  +G FK
Sbjct: 1263 KKKPKDDGIPNLAILQIYDGDLESEFNNFEDWVKTFELFRGKSTEDDHGLDGDRVIGKFK 1322

Query: 184  GNVMFYPADRDHLVTFSGKPLSNGALQESID-NEKVNVTIRVYIVRAYGLHPKDKDGKCD 242
            G+   Y + +D     SG+      +Q+ I  N  V V IRVYIV A+ L P D DGK D
Sbjct: 1323 GSFCIYKSPQDSSSEDSGQ----LRIQQGIPPNHPVTVLIRVYIVAAFNLSPADPDGKSD 1378

Query: 243  PYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIG 302
            PYIV+K G  EI DR+ Y+  Q+NP FGR FEIQ +FP ++ L++ I DHD +  DD IG
Sbjct: 1379 PYIVIKLGKTEIKDRDKYIPKQLNPVFGRSFEIQATFPKESLLSILIYDHDMIGTDDLIG 1438

Query: 303  MTEMDLESRFYSRHRGSCARWTSDLEVSG-------SSPGEVL 338
             T++DLE+RFYS+HR  C    S  E+ G       S P E+L
Sbjct: 1439 ETKIDLENRFYSKHRAICG-LQSQYEIEGYNAWRDTSKPTEIL 1480

Homo sapiens (taxid: 9606)

>sp|Q9ERC5|OTOF_RAT Otoferlin OS=Rattus norvegicus GN=Otof PE=1 SV=2

 Score =  155 bits (391), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 144  ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK-VGSFKGNVMFYPADRDHLVTF-SG 201
            EL  EF++F D L TF+   GK   +   +  E + VG FKG++  Y       V+  +G
Sbjct: 1410 ELESEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAG 1469

Query: 202  KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV 261
               + G  Q    N+ +NV +R+Y+VRA  LHP D +GK DPYI +K G  +I D+ENY+
Sbjct: 1470 YDPTYGMFQGIPSNDPINVLVRIYVVRATDLHPADINGKADPYIAIKLGKTDIRDKENYI 1529

Query: 262  TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
            + Q+NP FG+ F+I+ SFP ++ LTV + D D V  DD IG T++DLE+RFYS+HR +C 
Sbjct: 1530 SKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCG 1589

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses. Interacts in a calcium-dependent manner to the presynaptic SNARE proteins at ribbon synapses of cochlear inner hair cells (IHCs) to trigger exocytosis of neurotransmitter. Also essential to synaptic exocytosis in immature outer hair cells (OHCs). May also play a role within the recycling of endosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3

 Score =  155 bits (391), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 144  ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK-VGSFKGNVMFYPADRDHLVTF-SG 201
            EL  EF++F D L TF+   GK   +   +  E + VG FKG++  Y       V+  +G
Sbjct: 1414 ELESEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAG 1473

Query: 202  KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV 261
               + G  Q    N+ +NV +RVY+VRA  LHP D +GK DPYI ++ G  +I D+ENY+
Sbjct: 1474 YDSTYGMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENYI 1533

Query: 262  TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
            + Q+NP FG+ F+I+ SFP ++ LTV + D D V  DD IG T++DLE+RFYS+HR +C 
Sbjct: 1534 SKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCG 1593

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses. Interacts in a calcium-dependent manner to the presynaptic SNARE proteins at ribbon synapses of cochlear inner hair cells (IHCs) to trigger exocytosis of neurotransmitter. Also essential to synaptic exocytosis in immature outer hair cells (OHCs). May also play a role within the recycling of endosomes.

Homo sapiens (taxid: 9606)

>sp|Q5SPC5|OTOF_DANRE Otoferlin OS=Danio rerio GN=otof PE=3 SV=1

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 113/181 (62%), Gaps = 3/181 (1%)

Query: 144  ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK--VGSFKGNVMFYPADRDHLVTF-S 200
            EL  EF  F D L TF+ Y GK   ++ + + +    VG FKG++  Y       +T  +
Sbjct: 1408 ELESEFGSFEDWLHTFNLYRGKAGDDDDHNVVDEDRIVGRFKGSLCMYKLPLSEEITREA 1467

Query: 201  GKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY 260
            G   + G  Q    N+ +NV +R+YI+RA  LHP D +GK DPYIV+K G  +I D+ENY
Sbjct: 1468 GFDPNMGMFQSIPHNDPINVLVRIYIIRATDLHPADINGKADPYIVIKLGKSDIRDKENY 1527

Query: 261  VTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC 320
            ++ Q+NP FG+ F+I+ +FP ++ LTV + D D V  DD IG T++DLE+R+YS+HR +C
Sbjct: 1528 ISKQLNPVFGKSFDIEATFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRYYSKHRATC 1587

Query: 321  A 321
             
Sbjct: 1588 G 1588

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses.

Danio rerio (taxid: 7955)

>sp|Q9ESF1|OTOF_MOUSE Otoferlin OS=Mus musculus GN=Otof PE=1 SV=1

 Score =  154 bits (390), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 111/180 (61%), Gaps = 2/180 (1%)

Query: 144  ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK-VGSFKGNVMFYPADRDHLVTF-SG 201
            EL  EF+ F D L TF+   GK   +   +  E + VG FKG++  Y       V+  +G
Sbjct: 1414 ELESEFDSFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAG 1473

Query: 202  KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV 261
               + G  Q    N+ +NV +R+Y+VRA  LHP D +GK DPYI +K G  +I D+ENY+
Sbjct: 1474 YDPTYGMFQGIPSNDPINVLVRIYVVRATDLHPADINGKADPYIAIKLGKTDIRDKENYI 1533

Query: 262  TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
            + Q+NP FG+ F+I+ SFP ++ LTV + D D V  DD IG T++DLE+RFYS+HR +C 
Sbjct: 1534 SKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCG 1593

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses. Interacts in a calcium-dependent manner to the presynaptic SNARE proteins at ribbon synapses of cochlear inner hair cells (IHCs) to trigger exocytosis of neurotransmitter. Also essential to synaptic exocytosis in immature outer hair cells (OHCs). May also play a role within the recycling of endosomes.

Mus musculus (taxid: 10090)

>sp|A3KGK3|FR1L4_MOUSE Fer-1-like protein 4 OS=Mus musculus GN=Fer1l4 PE=2 SV=3

 Score =  144 bits (362), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 97/294 (32%), Positives = 142/294 (48%), Gaps = 43/294 (14%)

Query: 86   PEVDTD--EEEKPDWWSLYYSSVYS-----------------------SGVVEKIQQIQR 120
            PE++ D  + E+ DWWS YY+S+                         SG  ++  Q Q 
Sbjct: 1297 PELEEDIPDPEEMDWWSKYYASLQEFQGQPSSDDEMDEAGDADGTHLISG--DREAQEQG 1354

Query: 121  ENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK-V 179
            E + + ++   K    +   N   L  EF HF D L  F  Y G+   + +   A    V
Sbjct: 1355 ETDSKVSVPRKKAIATLKIYNS-SLEDEFSHFEDWLSVFPLYRGQGGQDGEGEGASGHFV 1413

Query: 180  GSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDG 239
            G FKG+ + YP       +FS   +S G  Q    N  + + +RVYIV+A  L P D +G
Sbjct: 1414 GKFKGSFLIYPESEAK--SFSEPQISRGVPQ----NRPIKLLVRVYIVKATNLAPADPNG 1467

Query: 240  KCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD 299
            K DPY+V+  G  + + +E Y+  Q+NP FG   E+  S P   +LTV + DHD V  DD
Sbjct: 1468 KADPYVVVSAGKEQRDTKERYIPKQLNPIFGEVLELSVSLPAQPELTVAVFDHDLVGSDD 1527

Query: 300  YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSS-------PGEVLPGITLQSG 346
             IG T +DLE+RFYS HR +C    S  +V+G +       P ++L G+  + G
Sbjct: 1528 LIGETHIDLENRFYSHHRANCG-LASQYDVNGYNAWRDAFRPSQILAGLCQRCG 1580

Mus musculus (taxid: 10090)

>sp|A9Z1Z3|FR1L4_HUMAN Fer-1-like protein 4 OS=Homo sapiens GN=FER1L4 PE=2 SV=1

 Score =  141 bits (355), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 100/292 (34%), Positives = 137/292 (46%), Gaps = 41/292 (14%)

Query: 87   EVDTDEEEKPDWWSLYYSSVY------------------SSGV-----VEKIQQIQRENE 123
            E D  + E+ DW S YY+S+                   S GV     V +IQ  Q E E
Sbjct: 1099 EEDIPDPEELDWGSKYYASLQELQGQHNFDEDEMDDPGDSDGVNLISMVGEIQD-QGEAE 1157

Query: 124  ERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK--VGS 181
             + T+   K    +   N   L  EF HF D L  F  Y G+   +           VG 
Sbjct: 1158 VKGTVSPKKAVATLKIYNR-SLKEEFNHFEDWLNVFPLYRGQGGQDGGGEEEGSGHLVGK 1216

Query: 182  FKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKC 241
            FKG+ + YP      V FS   +S G  Q    N  + + +RVY+V+A  L P D +GK 
Sbjct: 1217 FKGSFLIYP--ESEAVLFSEPQISRGIPQ----NRPIKLLVRVYVVKATNLAPADPNGKA 1270

Query: 242  DPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI 301
            DPY+V+  G    + +E Y+  Q+NP FG   E+  S P + +LTV + DHD V  DD I
Sbjct: 1271 DPYVVVSAGRERQDTKERYIPKQLNPIFGEILELSISLPAETELTVAVFDHDLVGSDDLI 1330

Query: 302  GMTEMDLESRFYSRHRGSCARWTSDLEVSGSS-------PGEVLPGITLQSG 346
            G T +DLE+RFYS HR +C    S  EV G +       P ++L G+  + G
Sbjct: 1331 GETHIDLENRFYSHHRANCG-LASQYEVDGYNAWRDAFWPSQILAGLCQRCG 1381

Homo sapiens (taxid: 9606)

>sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=MYOF PE=1 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 116/230 (50%), Gaps = 22/230 (9%)

Query: 92   EEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEH 151
            EEE  DWWS +Y+S   SG  EK  Q  ++   +  I  C          ELE V EFE 
Sbjct: 1447 EEEIVDWWSKFYAS---SGEHEKCGQYIQKGYSKLKIYNC----------ELENVAEFEG 1493

Query: 152  FADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQE 211
              D   TF  Y GK   N   ++    VG FKG+   YP   D  V     P      +E
Sbjct: 1494 LTDFSDTFKLYRGKSDENEDPSV----VGEFKGSFRIYPLPDDPSV-----PAPPRQFRE 1544

Query: 212  SIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGR 271
              D+     T+R+YIVR   L P+D +G CDPYI +  G   I DR++Y+ N +NP FGR
Sbjct: 1545 LPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGR 1604

Query: 272  HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
             +E+    P +  L + + D+D+ ++D+ +G T +DLE+RF SR    C 
Sbjct: 1605 MYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCG 1654

Calcium/phospholipid-binding protein that plays a role in the plasmalemma repair mechanism of endothelial cells that permits rapid resealing of membranes disrupted by mechanical stress. Involved in endocytic recycling. Implicated in VEGF signal transduction by regulating the levels of the receptor KDR.

Homo sapiens (taxid: 9606)

>sp|Q69ZN7|MYOF_MOUSE Myoferlin OS=Mus musculus GN=Myof PE=1 SV=2

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 116/230 (50%), Gaps = 22/230 (9%)

Query: 92   EEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEH 151
            EEE  DWWS +Y+S   SG  EK  Q  ++   +  I  C          ELE V +FE 
Sbjct: 1434 EEEIVDWWSKFYAS---SGEHEKCGQYIQKGYSKLKIYDC----------ELEDVADFEG 1480

Query: 152  FADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQE 211
              D   TF  Y GK   N   ++    VG FKG+   YP   D  V     P      +E
Sbjct: 1481 LTDFSDTFKLYRGKSDENEDPSV----VGEFKGSFRIYPLPDDPSV-----PAPPRQFRE 1531

Query: 212  SIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGR 271
              D+     T+R+YIV+   L P+D +G CDPYI +  G   I DR++Y+ N +NP FGR
Sbjct: 1532 LPDSVPQECTVRIYIVQGLQLQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGR 1591

Query: 272  HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
             +E+    P +  L + + D+D+ ++D+ +G T +DLE+RF SR    C 
Sbjct: 1592 MYELSCYLPQEKDLKISVYDYDTFTRDEKVGETTIDLENRFLSRFGSHCG 1641

Calcium/phospholipid-binding protein that plays a role in the plasmalemma repair mechanism of endothelial cells that permits rapid resealing of membranes disrupted by mechanical stress. Involved in endocytic recycling. Implicated in VEGF signal transduction by regulating the levels of the receptor KDR.

Mus musculus (taxid: 10090)

>sp|B3DLH6|MYOF_XENTR Myoferlin OS=Xenopus tropicalis GN=myof PE=2 SV=1

 Score =  134 bits (338), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 118/231 (51%), Gaps = 24/231 (10%)

Query: 92   EEEKPDWWSLYYSSVYSSGVVEKIQQ-IQRENEERKTIRLCKCCNIVPPKNELELVPEFE 150
            EEE  DWWS YY+S   +G  EK  Q IQ+      T+++ KC        ELE V EF 
Sbjct: 1320 EEEVVDWWSKYYAS---TGETEKCGQYIQKG---YTTLKVYKC--------ELENVSEFR 1365

Query: 151  HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQ 210
               D   TF  Y GK   ++  ++    VG FKG+   YP   D  + +  +        
Sbjct: 1366 GLTDFCDTFKLYRGKAEDSDDPSV----VGEFKGSFRIYPLPDDPNIPYPPR-----QFL 1416

Query: 211  ESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFG 270
            E    E     +R+YIVR   L PKD +G CDPYI +      I DR++Y+ N +NP FG
Sbjct: 1417 ELPGTESQECIVRIYIVRGIDLQPKDNNGLCDPYIKITLNKKVIEDRDHYIPNTLNPLFG 1476

Query: 271  RHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
            R +E+    P +  L + + D+D++++D+ +G T +DLE+RF SR    C 
Sbjct: 1477 RMYELSCFLPQEKDLKISVYDYDTLTRDEKVGETTIDLENRFLSRFGSHCG 1527

May play a role in membrane regeneration and repair.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
363731119	1866	PREDICTED: fer-1-like protein 6 [Gallus	0.678	0.132	0.386	3e-41
326918078	1862	PREDICTED: fer-1-like protein 6-like [Me	0.678	0.132	0.382	2e-40
357605420	1946	hypothetical protein KGM_21618 [Danaus p	0.626	0.117	0.385	4e-40
449278641	1823	Fer-1-like protein 6, partial [Columba l	0.659	0.131	0.395	6e-40
91079979	3578	PREDICTED: similar to otoferlin [Triboli	0.579	0.058	0.409	7e-39
340729191	2060	PREDICTED: LOW QUALITY PROTEIN: otoferli	0.494	0.087	0.483	8e-39
350416842	2060	PREDICTED: otoferlin-like [Bombus impati	0.494	0.087	0.483	9e-39
270004610	4813	hypothetical protein TcasGA2_TC003976 [T	0.579	0.043	0.409	1e-38
307204819	2061	Otoferlin [Harpegnathos saltator]	0.574	0.101	0.439	1e-38
345305958	1928	PREDICTED: fer-1-like protein 6 [Ornitho	0.626	0.118	0.395	2e-38

>gi|363731119|ref|XP_003640913.1| PREDICTED: fer-1-like protein 6 [Gallus gallus]

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/282 (38%), Positives = 141/282 (50%), Gaps = 35/282 (12%)

Query: 88   VDTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKN------ 141
             D   E   DWWS YY+S+     +++I   + + EE K         +    N      
Sbjct: 1212 ADESAENVIDWWSKYYASMLKMQKMKEIFPSEGKAEECKQTSDYIALTVEEEPNKKKDKT 1271

Query: 142  ------------------ELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFK 183
                              E +L  EF +F D ++TF    GK          +  +G FK
Sbjct: 1272 FKRKQQETTPNLATLQIYEGDLESEFNNFEDWVKTFQLLRGKSNDEVHADSEDRIIGKFK 1331

Query: 184  GNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDP 243
            G+   YP+  D  V   G+P     LQ    N  +NV IRVYIV A+ L P D DGK DP
Sbjct: 1332 GSFCIYPSPEDGSVLDGGQP---HILQGIPPNHSINVLIRVYIVAAFNLSPADPDGKSDP 1388

Query: 244  YIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGM 303
            YIVL+ G+ EI DRENY+  Q+NP FGR FEIQ +FP D+ LTV I DHD V  DD IG 
Sbjct: 1389 YIVLRLGNTEIKDRENYIPKQLNPVFGRSFEIQATFPKDSLLTVLIYDHDFVGTDDLIGE 1448

Query: 304  TEMDLESRFYSRHRGSCARWTSDLEVSG-------SSPGEVL 338
            T++DLE+RFYSRHR +C    S  E+ G       + P E+L
Sbjct: 1449 TKIDLENRFYSRHRATCG-LQSQYEIEGYNAWRDATKPSEIL 1489

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326918078|ref|XP_003205318.1| PREDICTED: fer-1-like protein 6-like [Meleagris gallopavo]

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 141/282 (50%), Gaps = 35/282 (12%)

Query: 88   VDTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKN------ 141
             D   E   DWWS YY+S+     +++I   + + E+ K         +    N      
Sbjct: 1207 ADESAENVIDWWSKYYASMLKMQKMKEIFPSEGKAEDCKQTSDYIALTVEEEPNKKKDKT 1266

Query: 142  ------------------ELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFK 183
                              E +L  EF +F D ++TF    GK          +  +G FK
Sbjct: 1267 FKRKQQETTPNLATLQIYEGDLESEFNNFEDWVKTFQLLRGKSNDEVHADSEDRIIGKFK 1326

Query: 184  GNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDP 243
            G+   YP+  D  +   G+P     LQ    N  VNV IRVYIV A+ L P D DGK DP
Sbjct: 1327 GSFCIYPSHEDGSLLDGGQP---HILQGIPPNHSVNVLIRVYIVAAFNLSPADPDGKSDP 1383

Query: 244  YIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGM 303
            YIVL+ G+ EI DRENY+  Q+NP FGR FEIQ +FP D+ LTV I DHD V  DD IG 
Sbjct: 1384 YIVLRLGNTEIKDRENYIPKQLNPVFGRSFEIQATFPKDSLLTVLIYDHDFVGTDDLIGE 1443

Query: 304  TEMDLESRFYSRHRGSCARWTSDLEVSG-------SSPGEVL 338
            T++DLE+RFYSRHR +C    S  E+ G       + P E+L
Sbjct: 1444 TKIDLENRFYSRHRATCG-LQSQYEIEGYNAWRDATKPSEIL 1484

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357605420|gb|EHJ64608.1| hypothetical protein KGM_21618 [Danaus plexippus]

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/280 (38%), Positives = 149/280 (53%), Gaps = 52/280 (18%)

Query: 91   DEEEKPDWWSLYYSSVYSSGVVEKIQQIQRE----------NEERK-------------- 126
            D+E   DWW+ Y++SV +    EK  + +R+          NE R               
Sbjct: 1268 DDESNKDWWTKYFASVETMIEDEKENKRERDYLRPPQISYINELRSPREELGSPRFDRDR 1327

Query: 127  -------TIRLCKCCNIVPPKNE-------------LELVPEFEHFADVLQTFDFYYGKL 166
                   T    K   +V PKNE             LE VPE+E F + L +F+ Y GK 
Sbjct: 1328 RRDPQPSTSSRSKTGPLVAPKNEIPRSAMTKVYPHELEAVPEYEEFKEWLNSFELYRGKK 1387

Query: 167  FSNNKNTLAEMKVGSFKGNVMFY--PADR---DHLVTFSGKPLSNGALQESIDNEKVNVT 221
              ++      + VG FKG +  Y  P  R   DH  T  G   SNG  Q   +N+ ++V 
Sbjct: 1388 TGDDSEDDNRV-VGVFKGAIKVYKWPLPRGIDDH--TIMGFDPSNGFFQGVPNNDPIHVL 1444

Query: 222  IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT 281
            +RVYIV+A  LHP D +GK DPYI L+ GS +I+D+ENYV+ Q+NP FG+ FEI+ +FP 
Sbjct: 1445 VRVYIVKATDLHPMDINGKADPYISLQLGSKKISDKENYVSKQLNPVFGKCFEIEATFPQ 1504

Query: 282  DAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
            D+ LT+++ D D V  DD IG T++DLE+RFYSRHR +C 
Sbjct: 1505 DSNLTIQVLDWDLVGSDDLIGETKIDLENRFYSRHRATCG 1544

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449278641|gb|EMC86442.1| Fer-1-like protein 6, partial [Columba livia]

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/268 (39%), Positives = 137/268 (51%), Gaps = 28/268 (10%)

Query: 88   VDTDEEEKPDWWSLYYSSVYSSGVVEKI--QQIQRENEERKTIRLCKCCNIVPPKN---- 141
             D   E   DWWS YY+SV      + I   + + E+ ++ +  +       P K     
Sbjct: 1170 ADESAENVIDWWSKYYASVLKMQKAKGIFSSEGKPEDNKQTSDHIALIVEEEPDKKKKDK 1229

Query: 142  ------------------ELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFK 183
                              E +L  EF +F D ++TF    GK          +  +G FK
Sbjct: 1230 TLKKKQKETPNLATLQIYEGDLESEFNNFEDWVKTFHLLRGKSNDEVHADSEDRIIGKFK 1289

Query: 184  GNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDP 243
            G+   YP+  D  +   G+P     LQ    N  VNV IRVYIV A+ L P D DGK DP
Sbjct: 1290 GSFCIYPSPEDGNLLDGGQPR---ILQGIPPNHSVNVLIRVYIVAAFNLSPADPDGKSDP 1346

Query: 244  YIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGM 303
            YIVL+ G+ EI DRENY+  Q+NP FGR FEIQ +FP D+ LTV I DHD V  DD IG 
Sbjct: 1347 YIVLRLGNTEIKDRENYIPKQLNPVFGRSFEIQAAFPKDSLLTVLIYDHDFVGTDDLIGE 1406

Query: 304  TEMDLESRFYSRHRGSCARWTSDLEVSG 331
            T++DLE+RFYSRHR +C    S  E+ G
Sbjct: 1407 TKIDLENRFYSRHRATCG-LQSQYEIEG 1433

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91079979|ref|XP_970237.1| PREDICTED: similar to otoferlin [Tribolium castaneum]

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 122/227 (53%), Gaps = 16/227 (7%)

Query: 97   DWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVL 156
            DWW+ +Y+S+  + +  KI              L     +    +ELE  PEFE F D L
Sbjct: 959  DWWTKFYASLEETPLTGKIP-------------LSHKYKLKVYSHELEQQPEFEGFCDTL 1005

Query: 157  QTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFY--PADRDHLVTFSGKPLSNGALQESID 214
            ++F+ Y GK   +     A    G FKG +  Y  P + D  VT +G PL  G  Q+   
Sbjct: 1006 RSFEMYKGKRTGDEAVDEANT-TGVFKGALRIYQWPLNGDDFVTPTGLPLQGGIFQDFPT 1064

Query: 215  NEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFE 274
            N  +N  +RVY VR   L PKD  GK DPY+ L      IND++N +  QINP FGR FE
Sbjct: 1065 NTPINFVLRVYCVRGLNLRPKDISGKSDPYLHLTLNQSVINDKQNCIKRQINPIFGRCFE 1124

Query: 275  IQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
              G FP D  L + +KD D+VS DD IG T++DLE+RFYS+HRG C 
Sbjct: 1125 FNGIFPQDHTLVIAVKDWDAVSADDLIGQTKIDLENRFYSKHRGHCG 1171

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729191|ref|XP_003402890.1| PREDICTED: LOW QUALITY PROTEIN: otoferlin-like [Bombus terrestris]

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 89/184 (48%), Positives = 117/184 (63%), Gaps = 4/184 (2%)

Query: 141  NELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFY--PADRDHL-V 197
            NELE  PEFE F + L TF+ Y GK   +     + + VGSFKG +  Y  P  RD +  
Sbjct: 1476 NELEAQPEFEQFKEWLHTFELYRGKKTGDEPEDESRI-VGSFKGALKVYKWPLPRDLIDH 1534

Query: 198  TFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDR 257
            T  G     G  Q    NE ++V +RVYIV+A  LHP D +GK DPY+VL+ G   I+D+
Sbjct: 1535 TVMGFDPQYGFFQGVPSNEPIHVLVRVYIVKANDLHPCDLNGKADPYVVLQLGGKRISDK 1594

Query: 258  ENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHR 317
            ENYV+ Q+NP FG+ FEI+ +FP D+ LTV++ D D V  DD IG T++DLE+RFYSRHR
Sbjct: 1595 ENYVSKQLNPVFGKCFEIEATFPQDSLLTVQVLDWDLVGTDDMIGETKIDLENRFYSRHR 1654

Query: 318  GSCA 321
             +C 
Sbjct: 1655 ATCG 1658

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416842|ref|XP_003491130.1| PREDICTED: otoferlin-like [Bombus impatiens]

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/184 (48%), Positives = 117/184 (63%), Gaps = 4/184 (2%)

Query: 141  NELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFY--PADRDHL-V 197
            NELE  PEFE F + L TF+ Y GK   +     + + VGSFKG +  Y  P  RD +  
Sbjct: 1476 NELEAQPEFEQFKEWLHTFELYRGKKTGDEPEDESRI-VGSFKGALKVYKWPLPRDLIDH 1534

Query: 198  TFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDR 257
            T  G     G  Q    NE ++V +RVYIV+A  LHP D +GK DPY+VL+ G   I+D+
Sbjct: 1535 TVMGFDPQYGFFQGVPSNEPIHVLVRVYIVKANDLHPCDLNGKADPYVVLQLGGKRISDK 1594

Query: 258  ENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHR 317
            ENYV+ Q+NP FG+ FEI+ +FP D+ LTV++ D D V  DD IG T++DLE+RFYSRHR
Sbjct: 1595 ENYVSKQLNPVFGKCFEIEATFPQDSLLTVQVLDWDLVGTDDMIGETKIDLENRFYSRHR 1654

Query: 318  GSCA 321
             +C 
Sbjct: 1655 ATCG 1658

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004610|gb|EFA01058.1| hypothetical protein TcasGA2_TC003976 [Tribolium castaneum]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 122/227 (53%), Gaps = 16/227 (7%)

Query: 97   DWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVL 156
            DWW+ +Y+S+  + +  KI              L     +    +ELE  PEFE F D L
Sbjct: 939  DWWTKFYASLEETPLTGKIP-------------LSHKYKLKVYSHELEQQPEFEGFCDTL 985

Query: 157  QTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFY--PADRDHLVTFSGKPLSNGALQESID 214
            ++F+ Y GK   +     A    G FKG +  Y  P + D  VT +G PL  G  Q+   
Sbjct: 986  RSFEMYKGKRTGDEAVDEANT-TGVFKGALRIYQWPLNGDDFVTPTGLPLQGGIFQDFPT 1044

Query: 215  NEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFE 274
            N  +N  +RVY VR   L PKD  GK DPY+ L      IND++N +  QINP FGR FE
Sbjct: 1045 NTPINFVLRVYCVRGLNLRPKDISGKSDPYLHLTLNQSVINDKQNCIKRQINPIFGRCFE 1104

Query: 275  IQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
              G FP D  L + +KD D+VS DD IG T++DLE+RFYS+HRG C 
Sbjct: 1105 FNGIFPQDHTLVIAVKDWDAVSADDLIGQTKIDLENRFYSKHRGHCG 1151

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204819|gb|EFN83377.1| Otoferlin [Harpegnathos saltator]

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 131/223 (58%), Gaps = 14/223 (6%)

Query: 104  SSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEHFADVLQTFDFYY 163
            S+  ++  V K+      +  +KT  L     I P  NELE  PEFE F + L TF+ Y 
Sbjct: 1446 STANAAKFVSKLSPKHIAHNSKKTALL----KIYP--NELEAQPEFEQFKEWLHTFELYR 1499

Query: 164  GKLFSNNKNTLAEMKVGSFKGNVMFY----PADR-DHLVTFSGKPLSNGALQESIDNEKV 218
            GK   +     + + VGSFKG +  Y    P D  DH  T  G     G  Q    NE +
Sbjct: 1500 GKKTGDETEDESRI-VGSFKGALKVYKWPLPKDLVDH--TVMGFDPQYGFFQGVPSNEPI 1556

Query: 219  NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGS 278
            +V +RVYIV+A  LHP D +GK DPY+VL+ G   I+D+ENYV+ Q+NP FG+ FEI+ +
Sbjct: 1557 HVLVRVYIVKANDLHPCDLNGKADPYVVLQLGGKRISDKENYVSKQLNPVFGKCFEIEAT 1616

Query: 279  FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA 321
            FP D+ LTV++ D D V  DD IG T++DLE+RFYSRHR +C 
Sbjct: 1617 FPQDSLLTVQVLDWDLVGTDDMIGETKIDLENRFYSRHRATCG 1659

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345305958|ref|XP_001511652.2| PREDICTED: fer-1-like protein 6 [Ornithorhynchus anatinus]

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 139/263 (52%), Gaps = 35/263 (13%)

Query: 88   VDTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQ-RENEERKTIRLC--------------- 131
            VD   E   DWWS YY+S+  +   +K  Q   ++N   KT ++                
Sbjct: 1272 VDESAENVIDWWSKYYASIKKAQKAKKNHQKNGKDNNVSKTGQVVINVEDGLKKKKDKQL 1331

Query: 132  ---KCCNIVPPKN-----ELELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFK 183
               K    +P        E EL  +F +F D ++TF+   GK   ++     +  +G FK
Sbjct: 1332 KNTKEEEEIPNLEVMQIYEEELESKFNNFEDWVKTFELLRGKSSEDDHIIDEDRIIGKFK 1391

Query: 184  GNVMFYPADRDHLVTFSGKPLSNGALQESID-----NEKVNVTIRVYIVRAYGLHPKDKD 238
            G+   Y   +DH    SG+    G LQ  I      N  + V IRVYIV A+ L   D D
Sbjct: 1392 GSFCIYKTPKDH----SGE--DGGGLQLQIQQGIPANHSIQVLIRVYIVAAFNLSATDLD 1445

Query: 239  GKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD 298
            GK DPYIVLK G+ EI DRENY+  Q+NP FGR FEIQ +FP ++ L+V I DHD +  D
Sbjct: 1446 GKSDPYIVLKLGNTEIKDRENYIPKQLNPVFGRSFEIQATFPKESLLSVLIYDHDLIGMD 1505

Query: 299  DYIGMTEMDLESRFYSRHRGSCA 321
            D IG T++DLE+RFYSRHRG+C 
Sbjct: 1506 DLIGETKIDLENRFYSRHRGTCG 1528

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
UNIPROTKB|F1NNU9	1849	FER1L6 "Uncharacterized protei	0.505	0.099	0.494	2.2e-39
ZFIN|ZDB-GENE-110406-5	1801	si:ch73-50f9.1 "si:ch73-50f9.1	0.486	0.098	0.425	4.8e-37
ZFIN|ZDB-GENE-030131-7778	1992	otof "otoferlin" [Danio rerio	0.513	0.093	0.429	8.1e-37
UNIPROTKB|Q9HC10	1997	OTOF "Otoferlin" [Homo sapiens	0.483	0.088	0.438	8.2e-37
RGD|1564703	1730	Fer1l6 "fer-1-like 6 (C. elega	0.502	0.105	0.433	8.8e-37
UNIPROTKB|E1BS70	2010	OTOF "Uncharacterized protein"	0.486	0.088	0.446	1.1e-36
UNIPROTKB|E2RRM8	1858	FER1L6 "Uncharacterized protei	0.502	0.098	0.439	1.3e-36
UNIPROTKB|J9P6N0	1868	FER1L6 "Uncharacterized protei	0.502	0.097	0.439	1.3e-36
UNIPROTKB|J9P9C0	1915	OTOF "Uncharacterized protein"	0.483	0.091	0.438	1.9e-36
UNIPROTKB|E2RDS5	1997	OTOF "Uncharacterized protein"	0.483	0.088	0.438	2.1e-36

UNIPROTKB|F1NNU9 FER1L6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 435 (158.2 bits), Expect = 2.2e-39, P = 2.2e-39
 Identities = 95/192 (49%), Positives = 121/192 (63%)

Query:   142 ELELVPEFEHFADVLQTFDFYYGKLFSNNK-NTLAEMKV-GSFKGNVMFYPADRDHLVTF 199
             E +L  EF +F D ++TF    GK  SN++ +  +E ++ G FKG+   YP+  D  V  
Sbjct:  1273 EGDLESEFNNFEDWVKTFQLLRGK--SNDEVHADSEDRIIGKFKGSFCIYPSPEDGSVLD 1330

Query:   200 SGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN 259
              G+P     LQ    N  +NV IRVYIV A+ L P D DGK DPYIVL+ G+ EI DREN
Sbjct:  1331 GGQP---HILQGIPPNHSINVLIRVYIVAAFNLSPADPDGKSDPYIVLRLGNTEIKDREN 1387

Query:   260 YVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGS 319
             Y+  Q+NP FGR FEIQ +FP D+ LTV I DHD V  DD IG T++DLE+RFYSRHR +
Sbjct:  1388 YIPKQLNPVFGRSFEIQATFPKDSLLTVLIYDHDFVGTDDLIGETKIDLENRFYSRHRAT 1447

Query:   320 CARWTSDLEVSG 331
             C    S  E+ G
Sbjct:  1448 CGL-QSQYEIEG 1458

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-110406-5 si:ch73-50f9.1 "si:ch73-50f9.1" [Danio rerio (taxid:7955)]

 Score = 396 (144.5 bits), Expect = 4.8e-37, Sum P(2) = 4.8e-37
 Identities = 77/181 (42%), Positives = 111/181 (61%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSN---NKNTLAEMK-VGSFKGNVMFYPADRDHLVTF 199
             EL  E+  F D L TF+ + GK   +   ++N   E + +G FKG++  Y    D +   
Sbjct:  1216 ELEYEYNQFEDWLHTFNLHRGKCSDDADVDQNAADEDRLIGKFKGSLCIYKVSSDDMSRD 1275

Query:   200 SGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN 259
              G   + G  Q    N+ +NV +R+Y+VRA  LHP D +GK DPYI +K G  EI D+EN
Sbjct:  1276 MGFDSNMGMFQNIPHNDPINVLVRIYVVRATDLHPADINGKADPYIAIKLGKSEIKDKEN 1335

Query:   260 YVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGS 319
             Y++ Q+NP FG+ F+++ + P D+ LTV I D D V  DD IG T++DLE+RFYS+HR +
Sbjct:  1336 YISKQLNPVFGKSFDVEATLPMDSTLTVSIYDWDLVGTDDLIGETKIDLENRFYSKHRAT 1395

Query:   320 C 320
             C
Sbjct:  1396 C 1396

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-7778 otof "otoferlin" [Danio rerio (taxid:7955)]

 Score = 396 (144.5 bits), Expect = 8.1e-37, Sum P(2) = 8.1e-37
 Identities = 82/191 (42%), Positives = 118/191 (61%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSNNK-NTLAEMK-VGSFKGNVMFYPADRDHLVTF-S 200
             EL  EF  F D L TF+ Y GK   ++  N + E + VG FKG++  Y       +T  +
Sbjct:  1408 ELESEFGSFEDWLHTFNLYRGKAGDDDDHNVVDEDRIVGRFKGSLCMYKLPLSEEITREA 1467

Query:   201 GKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY 260
             G   + G  Q    N+ +NV +R+YI+RA  LHP D +GK DPYIV+K G  +I D+ENY
Sbjct:  1468 GFDPNMGMFQSIPHNDPINVLVRIYIIRATDLHPADINGKADPYIVIKLGKSDIRDKENY 1527

Query:   261 VTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC 320
             ++ Q+NP FG+ F+I+ +FP ++ LTV + D D V  DD IG T++DLE+R+YS+HR +C
Sbjct:  1528 ISKQLNPVFGKSFDIEATFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRYYSKHRATC 1587

Query:   321 ARWTSDLEVSG 331
                 S+  V G
Sbjct:  1588 GI-ASNYSVHG 1597

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0030672 "synaptic vesicle membrane" evidence=ISS

GO:0030054 "cell junction" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

UNIPROTKB|Q9HC10 OTOF "Otoferlin" [Homo sapiens (taxid:9606)]

 Score = 396 (144.5 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 79/180 (43%), Positives = 113/180 (62%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK-VGSFKGNVMFY--PADRDHLVTFS 200
             EL  EF++F D L TF+   GK   +   +  E + VG FKG++  Y  P   D +   +
Sbjct:  1414 ELESEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPED-VSREA 1472

Query:   201 GKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY 260
             G   + G  Q    N+ +NV +RVY+VRA  LHP D +GK DPYI ++ G  +I D+ENY
Sbjct:  1473 GYDSTYGMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENY 1532

Query:   261 VTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC 320
             ++ Q+NP FG+ F+I+ SFP ++ LTV + D D V  DD IG T++DLE+RFYS+HR +C
Sbjct:  1533 ISKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATC 1592

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005509 "calcium ion binding" evidence=ISS

GO:0030672 "synaptic vesicle membrane" evidence=ISS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=TAS

RGD|1564703 Fer1l6 "fer-1-like 6 (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 401 (146.2 bits), Expect = 8.8e-37, Sum P(2) = 8.8e-37
 Identities = 82/189 (43%), Positives = 114/189 (60%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKP 203
             +L  EF +F D ++TF+ + GK   ++ +   +  +G FKG+   Y +  D     SG+ 
Sbjct:  1152 DLESEFNNFEDWVKTFELFRGKSTEDDHSLDGDRVIGKFKGSFCIYKSPEDSASEDSGQL 1211

Query:   204 LSNGALQESID-NEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT 262
                  +Q+ I  N  + V IRVYIV A+ L P D DGK DPYIVL+ G  EI DR+ Y+ 
Sbjct:  1212 ----RIQQGIPPNHPIQVLIRVYIVAAFNLSPADPDGKSDPYIVLRLGQTEIKDRDKYIP 1267

Query:   263 NQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCAR 322
              Q+NP FGR FEIQ +FP ++ L+V I DHD +  DD IG T++DLE+RFYS+HR  C  
Sbjct:  1268 KQLNPVFGRSFEIQATFPKESLLSVLIYDHDMIGSDDLIGETKIDLENRFYSKHRAICGL 1327

Query:   323 WTSDLEVSG 331
               S  E+ G
Sbjct:  1328 -QSQYEIEG 1335

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BS70 OTOF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 1.1e-36, P = 1.1e-36
 Identities = 80/179 (44%), Positives = 114/179 (63%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK-VGSFKGNVMFYPADR-DHLVTFSG 201
             EL  EF++F D L TF+   GK+  N+ N   E + VG FKG++  Y     D +   +G
Sbjct:  1427 ELEAEFDNFEDWLHTFNLLRGKIGDNDDNATEEERIVGRFKGSMCVYKVPLPDDITKEAG 1486

Query:   202 KPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV 261
                + G  Q    N+ +NV +RVYIVRA  LHP D +GK DPYI +K G  +I D+ENY+
Sbjct:  1487 YDPTFGMFQGIPSNDPINVLVRVYIVRATDLHPADINGKADPYIAIKLGKTDIKDKENYI 1546

Query:   262 TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC 320
             + Q+NP FG+ F+I+ +FP ++ LTV + D D V  DD IG T++DLE+R+YS+HR +C
Sbjct:  1547 SKQLNPVFGKSFDIEATFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRYYSKHRATC 1605

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RRM8 FER1L6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 409 (149.0 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 83/189 (43%), Positives = 115/189 (60%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKP 203
             +L  EF +F D ++TF+ + GK   ++     +  +G FKG+   Y + +D  +  SG+ 
Sbjct:  1284 DLESEFNNFEDWVKTFELFRGKSTEDDHGLDGDRVIGKFKGSFCIYKSPQDSGIEDSGQL 1343

Query:   204 LSNGALQESID-NEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT 262
                  +Q+ +  N  V V IRVYIV A+ L P D DGK DPYIV+K G  EI DR+ Y+ 
Sbjct:  1344 ----RIQQGVPPNHPVKVLIRVYIVAAFNLSPADPDGKADPYIVVKLGQTEIKDRDKYIP 1399

Query:   263 NQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCAR 322
              Q+NP FGR FEIQ +FP D+ L++ I DHD +  DD IG T++DLE+RFYSRHR  C  
Sbjct:  1400 KQLNPVFGRSFEIQATFPKDSLLSILIYDHDMIGTDDLIGETKIDLENRFYSRHRAICGL 1459

Query:   323 WTSDLEVSG 331
               S  E+ G
Sbjct:  1460 -QSQYEIEG 1467

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9P6N0 FER1L6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 409 (149.0 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 83/189 (43%), Positives = 115/189 (60%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKP 203
             +L  EF +F D ++TF+ + GK   ++     +  +G FKG+   Y + +D  +  SG+ 
Sbjct:  1294 DLESEFNNFEDWVKTFELFRGKSTEDDHGLDGDRVIGKFKGSFCIYKSPQDSGIEDSGQL 1353

Query:   204 LSNGALQESID-NEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT 262
                  +Q+ +  N  V V IRVYIV A+ L P D DGK DPYIV+K G  EI DR+ Y+ 
Sbjct:  1354 ----RIQQGVPPNHPVKVLIRVYIVAAFNLSPADPDGKADPYIVVKLGQTEIKDRDKYIP 1409

Query:   263 NQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCAR 322
              Q+NP FGR FEIQ +FP D+ L++ I DHD +  DD IG T++DLE+RFYSRHR  C  
Sbjct:  1410 KQLNPVFGRSFEIQATFPKDSLLSILIYDHDMIGTDDLIGETKIDLENRFYSRHRAICGL 1469

Query:   323 WTSDLEVSG 331
               S  E+ G
Sbjct:  1470 -QSQYEIEG 1477

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9P9C0 OTOF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
 Identities = 79/180 (43%), Positives = 113/180 (62%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK-VGSFKGNVMFY--PADRDHLVTFS 200
             EL  EF++F D L TF+   GK   +   +  E + VG FKG++  Y  P   D +   +
Sbjct:  1332 ELESEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPED-VSREA 1390

Query:   201 GKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY 260
             G   + G  Q    N+ +NV +RVY+VRA  LHP D +GK DPYI ++ G  +I D+ENY
Sbjct:  1391 GYDPTYGMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENY 1450

Query:   261 VTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC 320
             ++ Q+NP FG+ F+I+ SFP ++ LTV + D D V  DD IG T++DLE+RFYS+HR +C
Sbjct:  1451 ISKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATC 1510

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RDS5 OTOF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
 Identities = 79/180 (43%), Positives = 113/180 (62%)

Query:   144 ELVPEFEHFADVLQTFDFYYGKLFSNNKNTLAEMK-VGSFKGNVMFY--PADRDHLVTFS 200
             EL  EF++F D L TF+   GK   +   +  E + VG FKG++  Y  P   D +   +
Sbjct:  1414 ELESEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPED-VSREA 1472

Query:   201 GKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY 260
             G   + G  Q    N+ +NV +RVY+VRA  LHP D +GK DPYI ++ G  +I D+ENY
Sbjct:  1473 GYDPTYGMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENY 1532

Query:   261 VTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC 320
             ++ Q+NP FG+ F+I+ SFP ++ LTV + D D V  DD IG T++DLE+RFYS+HR +C
Sbjct:  1533 ISKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATC 1592

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	364
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-45
cd00030	102	cd00030, C2, C2 domain	5e-17
pfam00168	85	pfam00168, C2, C2 domain	2e-16
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-14
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	5e-12
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-08
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-07
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-06
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	6e-06
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	1e-05
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-05
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-05
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	5e-05
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-05
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	1e-04
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	1e-04
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-04
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	5e-04
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	0.001
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	0.001
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	0.001
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	0.002
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	0.002
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	0.003
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	0.004

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score =  150 bits (380), Expect = 8e-45
 Identities = 48/100 (48%), Positives = 71/100 (71%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
            +RVY+VRA  L PKD +GK DPY+ +K G  +INDR+NY+ N +NP FG+ FE++ + P
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP 60

Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC 320
            ++ L + + D+D +  DD IG T +DLE RF+S+HR +C
Sbjct: 61  GNSILKISVMDYDLLGSDDLIGETVIDLEDRFFSKHRATC 100

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 75.6 bits (186), Expect = 5e-17
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT 281
           +RV ++ A  L  KD +GK DPY+ +  G  +   +   V N +NP +   FE     P 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKF-KTKVVKNTLNPVWNETFEFPVLDPE 59

Query: 282 DAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
              LTVE+ D D  SKDD++G  E+ L  
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSE 88

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQGSFP 280
           +RV ++ A  L PKD +GK DPY+ +  G  + + ++   V N +NP +   F  + + P
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTE 305
             A+L +E+ D+D   KDD+IG   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQGSF 279
           T+ V I+ A  L PKDK GK DPY+ +         ++   V N +NP +   FE +   
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 280 PTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
           P  A+L +E+ D D   +DD+IG   + L  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 222 IRVYIVRAYGLHPKD--KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSF 279
           +RV++V A  L  KD    GK DPY +L  G+     +   + N +NP +    E     
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF--KTQTIPNTLNPKWNYWCEFPIFS 60

Query: 280 PTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRF 312
             +  L + + D D  +  DY+G  ++ LE  F
Sbjct: 61  AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVF 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI----NPYFGRHFEIQG 277
           + V ++ A  L   D++GK DP++        +N  + + T  I    NP +   FE+  
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVK-----FYLNGEKVFKTKTIKKTLNPVWNESFEVPV 55

Query: 278 SFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
                A L VE+ D D   KDD +G   +DL  
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVL--KTGSVEINDRENYVTNQINPYFGRHFEIQGS 278
           TIR  IVRA  L     +G  DPY+ L    G   I  +   + + +NP +   FE++  
Sbjct: 4   TIR--IVRAENLKADSSNGLSDPYVTLVDTNGKRRIA-KTRTIYDTLNPRWDEEFELEVP 60

Query: 279 FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYS 314
                 ++  + D   V K D  G   + L+ + + 
Sbjct: 61  AGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFG 96

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 211  ESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI----N 266
            E ++N   +  + + +     L   D++G  DP++ L      +N++  Y T  +    N
Sbjct: 1034 EMVEN---SGYLTIMLRSGENLPSSDENGYSDPFVKLF-----LNEKSVYKTKVVKKTLN 1085

Query: 267  PYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
            P +   F I+        LT+ + D DS  K+D +G  E+DL   
Sbjct: 1086 PVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKL 1130

Length = 1227

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY----------VTNQINPYFGR 271
           +RV I+ A  L P D +G  DP++      VE+  R  +              + P F  
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVK-----VELLPRHLFPDVPTPKTQVKKKTLFPLFDE 72

Query: 272 HFEIQGSFPT----DAKLTVEIKDHDSVSKDDYIG 302
            FE            A L   +KD+D +  +D+ G
Sbjct: 73  SFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEG 107

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI- 265
           G L  S++ +K    + V +++A  L P+D  G  DPY  ++     + DR N   ++I 
Sbjct: 3   GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRL----LPDRSNTKQSKIH 58

Query: 266 ----NPYFGRHFEIQGSFPTDAKLTVEIK--DHDSVSKDDYIGMTEMDLE 309
               NP F   F  +       K T+E+   D D  S+D+ IG+ E+ L 
Sbjct: 59  KKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLA 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 15/103 (14%)

Query: 222 IRVYIVRAYGLHPKD------KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEI 275
           +R++++ A  L  KD        GK DPY++++ G+     +   +   +NP +   +E 
Sbjct: 3   LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF--KSKVIKENLNPKWNEVYE- 59

Query: 276 QGSFPTDA---KLTVEIKDHDSVSKDDYIGMTEMDLESRFYSR 315
             +   +    +L +E+ D D   KDD++G   +DL S     
Sbjct: 60  --AVVDEVPGQELEIELFDED-PDKDDFLGRLSIDLGSVEKKG 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQIN-PYFGRHFEIQGSF 279
            +R +++ A  L PKD++G  DP++ +          E  V  +   P +   FE +   
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG---QTLETSVVKKSCYPRWNEVFEFELME 57

Query: 280 PTDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
             D+ L+VE+ D D VSK+D++G     ++
Sbjct: 58  GADSPLSVEVWDWDLVSKNDFLGKVVFSIQ 87

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI--NPYFGRHFEIQGS 278
           T+ V ++ A GL   D  GK DPY++++  + E   R++ V      NP +   F+    
Sbjct: 2   TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVE 58

Query: 279 FP---TDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
           +P    D KL + I D D+ S DD+IG   + L+
Sbjct: 59  YPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLK 92

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 21/141 (14%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT 281
           ++V +VR   L  +D     DPY+VL  G+ ++  R   +   +NP +    E+  S P 
Sbjct: 4   LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTR--VIKKNLNPVWNE--ELTLSVPN 58

Query: 282 DAK-LTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPG 340
               L +E+ D D+ SKDD +G  E+DLE       +    R T           +VLP 
Sbjct: 59  PMAPLKLEVFDKDTFSKDDSMGEAEIDLEP-LVEAAKLDHLRDTPGGTQI----KKVLPS 113

Query: 341 ----------ITLQSGEINSD 351
                     IT + G+I  D
Sbjct: 114 VENCLASESHITWKDGKIVQD 134

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQ--GS 278
           ++ + IV    L  KD  G  DPY ++K  + E+  R   V   +NP++G  + +     
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPPG 59

Query: 279 FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTS------DLEVSG 331
           F T   ++  + D D++S+DD IG  ++ L     S H      W +      D EV G
Sbjct: 60  FHT---VSFYVLDEDTLSRDDVIG--KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQG 113

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT 281
           + V IV    L P + +GK DPY  +  GS E   +   V++ +NP +    +       
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE--HKTKVVSDTLNPKWNSSMQFFVKDLE 74

Query: 282 DAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGI 341
              L + + D D  S DD++G TE+ + +      + S    T  L +     GEV+  +
Sbjct: 75  QDVLCITVFDRDFFSPDDFLGRTEIRV-ADILKETKESKGPITKRLLLHEVPTGEVVVKL 133

Query: 342 TLQ 344
            LQ
Sbjct: 134 DLQ 136

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 226 IVRAYGLHPKDKDGKCDPYIVLKTGSVEIN-----DRENYVTNQINPYFGRHFEIQGSFP 280
            +    L  KD   K DP++V+   +          R   + N +NP F   F +   F 
Sbjct: 6   SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE 65

Query: 281 TDAKLTVEIKDHDS----VSKDDYIGMTEMDL 308
              KL  E+ D DS    +S  D++G  E  L
Sbjct: 66  EVQKLRFEVYDVDSKSKDLSDHDFLGEAECTL 97

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 25/113 (22%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT 281
           I + +V A GL  KDK G  DPY+ ++ G  +   R   +   +NP +   F  +    +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK--KRTKTIPQNLNPVWNEKFHFECHNSS 60

Query: 282 D-AKLTVEIKDHDSVSK---------DDYIGMT---------EMD----LESR 311
           D  K+ V  +D D  S+         DD++G T         EMD    LE R
Sbjct: 61  DRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKR 113

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYI-VLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
           +R++I +A  L   +  GK DPY+ VL  G V+   R   ++N +NP +     +  + P
Sbjct: 3   LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVK--GRTVTISNTLNPVWDEVLYVPVTSP 60

Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDL 308
              K+T+E+ D++ V KD  +G  E+++
Sbjct: 61  NQ-KITLEVMDYEKVGKDRSLGSVEINV 87

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRENYVT-NQINPYFGRHFEIQG 277
            + V I+ A  L   D  G  DPY  I L      +  ++  +    +NPY+   F  + 
Sbjct: 16  KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEV 75

Query: 278 SFPT--DAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSP 334
            F       L V + D+D + K+D IG      +        G+  R  SD+  S   P
Sbjct: 76  PFEQIQKVHLIVTVLDYDRIGKNDPIG------KVVLGCNATGAELRHWSDMLASPRRP 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRENYV-TNQINPYFGRHFEIQG 277
            I V I++A  L   D +G  DPY  + L      +  ++  +    +NP F   F    
Sbjct: 16  RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN- 74

Query: 278 SFPT----DAKLTVEIKDHDSVSKDDYIG 302
             P     +  L + + D D +S++D IG
Sbjct: 75  -IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRENYVTNQ 264
           G +Q S+  +    T+ + I++A  L  KD  G  DP+  I L      + D+++ +  +
Sbjct: 3   GRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYL------LPDKKHKLETK 56

Query: 265 I-----NPYFGRHFEIQGSFP----TDAKLTVEIKDHDSVSKDDYIGMTEMDLE 309
           +     NP++   F  +G FP        L +++ D+D  S++D IG   + L 
Sbjct: 57  VKRKNLNPHWNETFLFEG-FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLN 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 221 TIRVYIVRAYGLHPKDKD-GKCDPYIVLK-TGSVEINDRENYVTNQINPYFGRHFEIQGS 278
            + V I RA  L   D   G  DPY+        +       +   +NP +   + +  +
Sbjct: 2   VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVT 61

Query: 279 ---FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
                   +L+  + D D  + DD +G  E+DL+ 
Sbjct: 62  PDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 14/97 (14%)

Query: 218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY----VTNQINPYFGRHF 273
           V + +    V    L P D +G  DPY+  + G+      E Y     +  +NP +   F
Sbjct: 2   VTIVL----VEGKNLPPMDDNGLSDPYVKFRLGN------EKYKSKVCSKTLNPQWLEQF 51

Query: 274 EIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
           ++         L +E+ D D+  KD++IG  E+DL +
Sbjct: 52  DLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSA 88

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 220 VTIRVYIVRAYGLHP--KDKDGKCDPYIVLKTGSVEI-----NDRENYVT-----NQINP 267
           +T+ + I+    L     DK    DPY+      VEI     +D   + T     N  NP
Sbjct: 2   LTLTIKIISGQQLPKPKGDKGSIVDPYV-----EVEIHGLPADDSAKFKTKVVKNNGFNP 56

Query: 268 YFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMT 304
            +   FE   + P  A L   + D DS   DD++G  
Sbjct: 57  VWNETFEFDVTVPELAFLRFVVYDEDS-GDDDFLGQA 92

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 222 IRVYIVRAYGLHPKDK-DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
           + V I  A GL   D   G  DPY+     +     R     +  NP +     I  +  
Sbjct: 4   LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL 63

Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
           T+  L + + D +   KD  IG  E DL S
Sbjct: 64  TE-PLNLTVYDFNDKRKDKLIGTAEFDLSS 92

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
KOG1326|consensus	1105		100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.83
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.82
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.82
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.8
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.79
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.77
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.77
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.76
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.76
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.76
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.75
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.75
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.75
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.75
KOG1030|consensus	168		99.75
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.73
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.72
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.72
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.72
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.72
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.71
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.71
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.71
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.71
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.7
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.7
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.7
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.69
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.69
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.68
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.68
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.68
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.67
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.67
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.67
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.66
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.65
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.65
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.65
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.65
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.65
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.65
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.64
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.64
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.64
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.64
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.64
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.63
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.63
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.62
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.61
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.61
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.61
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.6
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.6
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.6
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.6
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.6
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.59
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.59
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.59
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.59
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.58
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.58
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.58
KOG1028|consensus	421		99.58
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.57
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.57
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.57
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.56
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.56
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.55
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.54
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.54
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.54
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.54
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.53
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.53
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.53
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.52
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.52
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.5
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.5
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.5
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.49
KOG0696|consensus	683		99.49
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.48
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.47
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.46
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.46
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.46
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.41
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.38
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.37
PLN03008	868	Phospholipase D delta	99.34
PLN02223	537	phosphoinositide phospholipase C	99.22
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.22
KOG1011|consensus	1283		99.17
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.16
PLN02952	599	phosphoinositide phospholipase C	99.1
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.07
KOG2059|consensus	800		99.05
KOG1028|consensus	421		99.04
PLN02230	598	phosphoinositide phospholipase C 4	99.02
PLN02222	581	phosphoinositide phospholipase C 2	99.02
PLN02228	567	Phosphoinositide phospholipase C	98.99
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.93
KOG0169|consensus	746		98.93
KOG1328|consensus	1103		98.91
KOG1328|consensus	1103		98.84
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.71
KOG1264|consensus	1267		98.7
PLN02270	808	phospholipase D alpha	98.44
KOG2059|consensus	800		98.42
KOG1031|consensus	1169		98.42
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.28
KOG1013|consensus	362		98.01
KOG1013|consensus	362		97.82
PLN02352	758	phospholipase D epsilon	97.61
KOG0905|consensus	1639		97.42
KOG1326|consensus	1105		97.38
PLN02964	644	phosphatidylserine decarboxylase	97.25
KOG1011|consensus	1283		97.13
KOG1327|consensus	529		96.93
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.89
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	96.63
KOG1265|consensus	1189		96.4
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.73
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.73
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	95.6
KOG2060|consensus	405		95.52
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.48
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	95.48
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.14
PF15627	156	CEP76-C2: CEP76 C2 domain	92.41
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.41
KOG3837|consensus	523		90.76
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	90.43
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	89.68
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	88.84
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	88.54

>KOG1326|consensus

Probab=100.00  E-value=1.7e-46  Score=396.26  Aligned_cols=239  Identities=33%  Similarity=0.548  Sum_probs=218.0

Q ss_pred             CCCcccccCcccccC--CCCCCCccchhhhhhhhccccccchhHHHHHhhhhhhhhhhccCeeeeecCCCCcCCcccCCC
Q psy4890          74 PSGSNVYDTFTIPEV--DTDEEEKPDWWSLYYSSVYSSGVVEKIQQIQRENEERKTIRLCKCCNIVPPKNELELVPEFEH  151 (364)
Q Consensus        74 ~~~~~~~~~~~~~~~--~~~~e~~iDWWsKyyaS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkvy~~eLE~~~~F~~  151 (364)
                      |..+..++......+  ++.+|.++|||+|||+|.++..+++.|.             ++.+++||||++|||+++||++
T Consensus       486 ~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~-------------~K~~~~LKiyn~ele~v~ef~~  552 (1105)
T KOG1326|consen  486 DNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYE-------------HKINVTLKIYNMELEMVAEFRG  552 (1105)
T ss_pred             hhhhhhccccCCCCCccccccceehhhhhhccccccccccccccc-------------cccceEEEEehhhhhhHHHHhh
Confidence            334445555554443  4567888999999999999999999883             6779999999999999999999


Q ss_pred             ccccccccccccccccCCCCCccccceeeEEEeeEEEeecCCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEecC
Q psy4890         152 FADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYG  231 (364)
Q Consensus       152 f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A~d  231 (364)
                      |+||+++|+||||+.+.+   ..+++++|+|||+|+|||+|+++..+. +||+++.+    |.+.|+.++|||||++|.+
T Consensus       553 l~D~~~~f~l~rG~~~~e---~~e~~Ivg~fKgl~rIyp~~~~~~~p~-~pr~~~~~----~~~~pi~~LvrVyvv~A~~  624 (1105)
T KOG1326|consen  553 LQDWAVTFKLYRGKEGLE---CLEQQIVGEFKGLFRIYPVPRNPSSPA-PPRHFLDL----PKEEPIKCLVRVYVVEAFS  624 (1105)
T ss_pred             hhhccceeEeeeccccCC---CcccchhhhhhcceeeecCCCccCCCC-Chhhhhcc----cccCcceeeEEEEEEEeee
Confidence            999999999999998744   357899999999999999998887775 78999998    9999999999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeecccc
Q psy4890         232 LHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR  311 (364)
Q Consensus       232 L~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr  311 (364)
                      |+|.|.+|.+|||+++.+|++...++++++++|+||+|+++|++++.+|.+++|.|+|||+|.++.|+.||++.|||+|+
T Consensus       625 L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR  704 (1105)
T KOG1326|consen  625 LQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENR  704 (1105)
T ss_pred             ccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccccccccccCCCCCc
Q psy4890         312 FYSRHRGSCARWTSDLEVSGSSP  334 (364)
Q Consensus       312 ~~s~~~a~~gL~p~~y~~~G~~~  334 (364)
                      ++++|+++||+ +++|+++|++.
T Consensus       705 ~~T~~~a~cgl-aq~y~v~g~n~  726 (1105)
T KOG1326|consen  705 WLTRHRARCGL-AQTYCVSGANI  726 (1105)
T ss_pred             ccCcCCcccCc-cceeeeecccc
Confidence            99999999999 99999998763

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.83  E-value=2.2e-19  Score=153.37  Aligned_cols=117  Identities=13%  Similarity=0.159  Sum_probs=93.1

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeec-CCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT-NQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD  298 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~-~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskD  298 (364)
                      ..|+|+|++|++++..+ .|++||||++.+++++.+|++  +. +++||+|||.|.|.+.. ....|.|+|||+|.+++|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v--~~~~~~nP~WNe~F~f~v~~-~~~~l~~~V~d~d~~~~d   77 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPT--AYNGAKNPRWNKTIQCTLPE-GVDSIYIEIFDERAFTMD   77 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEE--ccCCCCCCccCeEEEEEecC-CCcEEEEEEEeCCCCcCC
Confidence            46899999999988777 799999999999998876654  44 48999999999999864 346799999999999999


Q ss_pred             ceeEEEEeeccccccc--cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         299 DYIGMTEMDLESRFYS--RHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       299 D~IGet~IdLenr~~s--~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      |+||++.|+|.+.+..  ....|..|.+   .......|+|+++|+|
T Consensus        78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~---~~~~~~~g~i~l~l~y  121 (121)
T cd04016          78 ERIAWTHITIPESVFNGETLDDWYSLSG---KQGEDKEGMINLVFSY  121 (121)
T ss_pred             ceEEEEEEECchhccCCCCccccEeCcC---ccCCCCceEEEEEEeC
Confidence            9999999999754432  1233444421   1123678999999997

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.82  E-value=6.5e-20  Score=156.23  Aligned_cols=107  Identities=46%  Similarity=0.891  Sum_probs=98.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      +|||+|++|++|++.|..|.+||||++.++++...++|.++.+++||.||+.|.|.+..+....|.|+|||+|.+++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            37999999999999999999999999999987766677778899999999999999988888899999999999999999


Q ss_pred             eEEEEeeccccccccCCCcccccccccc
Q psy4890         301 IGMTEMDLESRFYSRHRGSCARWTSDLE  328 (364)
Q Consensus       301 IGet~IdLenr~~s~~~a~~gL~p~~y~  328 (364)
                      ||++.|+|+++++++++.+|++ ++.++
T Consensus        81 iG~~~i~l~~~~~~~~~~~~~~-~~~~~  107 (124)
T cd04037          81 IGETVIDLEDRFFSKHRATCGL-PPTYE  107 (124)
T ss_pred             eEEEEEeecccccchHHHhccC-CCccc
Confidence            9999999999999888999999 77776

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=3.1e-19  Score=154.92  Aligned_cols=122  Identities=26%  Similarity=0.384  Sum_probs=101.8

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      ..|+|+|++|++|++.|..|.+||||++.++++..+|  .++.+++||.||++|.|.+..+....|.|+|||+|.+++|+
T Consensus        15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT--~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~   92 (136)
T cd08375          15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKT--KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD   92 (136)
T ss_pred             EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeec--cccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence            6789999999999999999999999999998876655  56899999999999999998777889999999999999999


Q ss_pred             eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      +||++.|+|.++..........+ ..+...++.++|+|++++.||
T Consensus        93 ~lG~~~i~l~~l~~~~~~~~~~~-~~~~~~~~~~~g~i~l~~~~~  136 (136)
T cd08375          93 FLGRTEIRVADILKETKESKGPI-TKRLLLHEVPTGEVVVKLDLQ  136 (136)
T ss_pred             eeEEEEEEHHHhccccccCCCcE-EEEeccccccceeEEEEEEeC
Confidence            99999999988764211111222 334445788999999999885

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.82  E-value=1.9e-19  Score=153.12  Aligned_cols=118  Identities=17%  Similarity=0.261  Sum_probs=94.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeec-----CCCCeEEEEEEecCCCC
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSF-----PTDAKLTVEIKDHDSVS  296 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~-----p~~~~L~V~V~D~D~is  296 (364)
                      |+|+|++|+||++.+.+|.+||||++.+++.+.+|  +++.+++||+||+.|.|.+..     +....|.|+|||++.++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT--~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~   78 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYST--SVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG   78 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeee--eeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence            58999999999999999999999999999876655  568899999999999999865     35778999999999999


Q ss_pred             CCceeEEEEeeccccccc---cCCCccccccccccCCCCCceEEEEEEE
Q psy4890         297 KDDYIGMTEMDLESRFYS---RHRGSCARWTSDLEVSGSSPGEVLPGIT  342 (364)
Q Consensus       297 kDD~IGet~IdLenr~~s---~~~a~~gL~p~~y~~~G~~~GEIllSL~  342 (364)
                      +|++||++.|+|.+....   ....|..|.+.. ......+|+|+++|+
T Consensus        79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~-~~~~~~~Gei~l~~~  126 (126)
T cd08682          79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP-GKDDKERGEIEVDIQ  126 (126)
T ss_pred             CCceeEEEEEEHHHhhccCCCcccEEEECcCCC-CCCccccceEEEEeC
Confidence            999999999999987532   122345552211 112356899999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.80  E-value=8.6e-19  Score=146.71  Aligned_cols=115  Identities=27%  Similarity=0.351  Sum_probs=94.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeee-cCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV-TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i-~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      .|+|+|++|++|++.+..|.+||||++.+++...+|+  ++ .+++||+||+.|.|.+..+....|.|+|||++..+ |+
T Consensus         2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~--~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~   78 (118)
T cd08681           2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTK--TDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PD   78 (118)
T ss_pred             EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccc--cccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Cc
Confidence            5789999999999999999999999999988655553  34 45799999999999998767789999999999886 99


Q ss_pred             eeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         300 YIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       300 ~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      +||++.++|.++... ....|..|     ...|..+|+|+++|+|
T Consensus        79 ~iG~~~~~l~~~~~~~~~~~w~~L-----~~~~~~~G~i~l~l~f  118 (118)
T cd08681          79 LIGDTEVDLSPALKEGEFDDWYEL-----TLKGRYAGEVYLELTF  118 (118)
T ss_pred             ceEEEEEecHHHhhcCCCCCcEEe-----ccCCcEeeEEEEEEEC
Confidence            999999999987543 22334433     1245689999999987

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.79  E-value=1.4e-18  Score=148.45  Aligned_cols=122  Identities=19%  Similarity=0.308  Sum_probs=98.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEE-----eeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE-----INDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV  295 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~-----~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i  295 (364)
                      +|+|+|++|++|++.|..|.+||||++.+++..     ...+|.++.+++||.||+.|.|.+. +....|.|+|||+|.+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECCCC
Confidence            378999999999999999999999999986541     1235567899999999999999986 4467899999999999


Q ss_pred             CCCceeEEEEeeccccccccCCCccccccccccCC-----CCCceEEEEEEEE
Q psy4890         296 SKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVS-----GSSPGEVLPGITL  343 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~-----G~~~GEIllSL~f  343 (364)
                      ++|++||++.+++.++.....+..+++.+.+|.++     +..+|+|++++.|
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            99999999999999887653333244444555443     4579999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=5e-18  Score=141.66  Aligned_cols=114  Identities=25%  Similarity=0.420  Sum_probs=94.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      +|+|+|++|+||++.+.+|.+||||+++++++..+|  .++.+++||.||+.|.|.+..+....|.|+|||++..++|++
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT--~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~   78 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKS--KVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF   78 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEec--ccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence            378999999999999999999999999998766554  568899999999999999876668899999999999999999


Q ss_pred             eEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         301 IGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       301 IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      ||++.++|.++... .+..|+.|       . +..|+|++.+.|.
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L-------~-~~~G~~~~~~~~~  115 (116)
T cd08376          79 IGRCEIDLSALPREQTHSLELEL-------E-DGEGSLLLLLTLT  115 (116)
T ss_pred             EEEEEEeHHHCCCCCceEEEEEc-------c-CCCcEEEEEEEec
Confidence            99999999876543 22223333       3 2369999998873

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=7.3e-18  Score=148.84  Aligned_cols=124  Identities=16%  Similarity=0.208  Sum_probs=98.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecC-CCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTN-QINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~-tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      |+|+|++|++|++.|.+|.+||||++.++++..+|++  +.+ ++||+|||.|+|.+..+....|.|.|||++..++|++
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~--~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~   79 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRP--SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEP   79 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEe--ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCe
Confidence            7899999999999999999999999999987776654  444 7999999999999977777899999999999989999


Q ss_pred             eEEEEeeccccccc-----cCCCccccccccc----cCCCCCceEEEEEEEEeecc
Q psy4890         301 IGMTEMDLESRFYS-----RHRGSCARWTSDL----EVSGSSPGEVLPGITLQSGE  347 (364)
Q Consensus       301 IGet~IdLenr~~s-----~~~a~~gL~p~~y----~~~G~~~GEIllSL~fq~g~  347 (364)
                      ||++.|+|.++...     ....|..|....-    ......+|+|+|+|+|.+++
T Consensus        80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~  135 (150)
T cd04019          80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY  135 (150)
T ss_pred             EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence            99999999986432     1234554421110    01124679999999997664

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=1.6e-17  Score=140.30  Aligned_cols=120  Identities=24%  Similarity=0.374  Sum_probs=96.0

Q ss_pred             EEEEEEEEecCCCCCCC--CCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCC
Q psy4890         221 TIRVYIVRAYGLHPKDK--DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD  298 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~--~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskD  298 (364)
                      +|+|+|++|++|++.+.  .|.+||||++.++.+..+|  .++.+++||.||+.|.|.+..+....|.|+|||++..++|
T Consensus         2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT--~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~   79 (128)
T cd04024           2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKT--QTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK   79 (128)
T ss_pred             EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEec--ceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            57899999999999998  8999999999998776554  5688999999999999999876788999999999999999


Q ss_pred             ceeEEEEeeccccccc----cCCCccccccccccCCCCCceEEEEEEE
Q psy4890         299 DYIGMTEMDLESRFYS----RHRGSCARWTSDLEVSGSSPGEVLPGIT  342 (364)
Q Consensus       299 D~IGet~IdLenr~~s----~~~a~~gL~p~~y~~~G~~~GEIllSL~  342 (364)
                      ++||++.|+|.++...    ....|..|.+..-......+|+|+++++
T Consensus        80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~  127 (128)
T cd04024          80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS  127 (128)
T ss_pred             CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence            9999999999987632    1223334422211112347999999886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=1.2e-17  Score=142.17  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=94.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCC---CCeEEEEEEecCCCC-C
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT---DAKLTVEIKDHDSVS-K  297 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~---~~~L~V~V~D~D~is-k  297 (364)
                      |+|+|++|++|++.+.+|.+||||++.+++++.+|  .++.+++||+||+.|.|.+..+.   ...|.|+|||++.++ +
T Consensus         2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT--~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~   79 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRT--RTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR   79 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecc--eeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence            68999999999999999999999999999876654  56789999999999999987543   468999999999887 8


Q ss_pred             CceeEEEEeecccccc-c-cCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         298 DDYIGMTEMDLESRFY-S-RHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       298 DD~IGet~IdLenr~~-s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      |++||++.|+|.++.. + ....|..|+.  ....+..+|||+|++++.
T Consensus        80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~--~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          80 RSFLGRVRISGTSFVPPSEAVVQRYPLEK--RGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCeeeEEEEcHHHcCCCCCccceEeEeee--CCCCCCccEEEEEEEEEc
Confidence            9999999999988762 1 1223444411  111335799999999873

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=1.2e-17  Score=141.97  Aligned_cols=114  Identities=23%  Similarity=0.315  Sum_probs=91.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      |+|+|++|+||++.    .+||||++.++++..+|  +++.+++||+||+.|.|.+..+....|.++|||+|.. +|++|
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT--~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l   74 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGST--KAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL   74 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccc--cccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence            68999999999987    78999999998765544  5688999999999999998767788999999999987 89999


Q ss_pred             EEEEeeccccccccCCCccccccccccCC----CCCceEEEEEEEE
Q psy4890         302 GMTEMDLESRFYSRHRGSCARWTSDLEVS----GSSPGEVLPGITL  343 (364)
Q Consensus       302 Get~IdLenr~~s~~~a~~gL~p~~y~~~----G~~~GEIllSL~f  343 (364)
                      |++.++|.++........... +.||.+.    ...+|+|+++|+|
T Consensus        75 G~~~i~l~~l~~~~~~~~~~~-~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          75 GGVCFDLSEVPTRVPPDSPLA-PQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             eeEEEEhHhCcCCCCCCCCCC-cceEEccCCCCCccceEEEEEEEe
Confidence            999999998765322111111 3344332    3578999999998

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.75  E-value=1.6e-17  Score=141.07  Aligned_cols=118  Identities=21%  Similarity=0.282  Sum_probs=93.8

Q ss_pred             EEEEEEEecCCCCCC-CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         222 IRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      |+|.|++|+||++.+ .+|.+||||.+.++++.. .+|+++.+|+||+|||.|.|.+. .....|.|.|||+|.+++|++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~-~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~~~~~~~~   79 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEV-FRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRDVLRRDSV   79 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccE-EEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECCCCCCCce
Confidence            568899999999974 568999999999976532 34566889999999999999986 345799999999999999999


Q ss_pred             eEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         301 IGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       301 IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      ||++.++|+++... ....|..|+|.  ...+..+|+|+++++|
T Consensus        80 iG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~~G~i~l~~~~  121 (121)
T cd08401          80 IGKVAIKKEDLHKYYGKDTWFPLQPV--DADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEEHHHccCCCCcEeeEEEEcc--CCCCcccEEEEEEEEC
Confidence            99999999887532 23346666443  2234469999999975

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.75  E-value=2.8e-17  Score=138.80  Aligned_cols=118  Identities=24%  Similarity=0.387  Sum_probs=97.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      |+|+|++|++|++.|.+|.+||||++.+++...+|  .++.+++||.||+.|.|.+..+....|.|+|||++..++|++|
T Consensus         2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT--~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLET--SVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL   79 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEec--eeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence            68999999999999999999999999998766554  5688999999999999999766678899999999999999999


Q ss_pred             EEEEeeccccccc-cCCCcccccccccc--CCCCCceEEEEEE
Q psy4890         302 GMTEMDLESRFYS-RHRGSCARWTSDLE--VSGSSPGEVLPGI  341 (364)
Q Consensus       302 Get~IdLenr~~s-~~~a~~gL~p~~y~--~~G~~~GEIllSL  341 (364)
                      |++.++|.++... ....|..|.|....  .++.+.|.|.+.|
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            9999999887543 23456666443222  3567899998875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.75  E-value=1.2e-17  Score=140.56  Aligned_cols=116  Identities=21%  Similarity=0.282  Sum_probs=93.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      |+|+|++|++|++.+..|.+||||++.+++. ....+|+++.+++||+||+.|.|.+..+....|.|+|||+|.+ +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            6899999999999998999999999998642 3344667789999999999999998766677899999999998 8999


Q ss_pred             eEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         301 IGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       301 IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      ||++.++|.++..+. .    . ..++.+.....|+|.+.+.+|
T Consensus        81 iG~~~~~l~~l~~g~-~----~-~~~~~L~~~~~g~l~~~~~~~  118 (119)
T cd04036          81 LGTVLFDVSKLKLGE-K----V-RVTFSLNPQGKEELEVEFLLE  118 (119)
T ss_pred             cEEEEEEHHHCCCCC-c----E-EEEEECCCCCCceEEEEEEee
Confidence            999999998765321 1    1 223334444689999999875

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=2.7e-17  Score=138.73  Aligned_cols=118  Identities=19%  Similarity=0.289  Sum_probs=93.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      |+|+|++|++|+..|.+|.+||||++.+++.. ..+|.++.+++||.||+.|.|.+..+ ...|.|+|||+|..++|++|
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i   79 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT-VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM   79 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE-EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence            68999999999999999999999999997632 23445678999999999999998644 57899999999999999999


Q ss_pred             EEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         302 GMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       302 Get~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      |++.++|.++..+. ...+..|..   .......|+|++.++|.
T Consensus        80 G~~~~~l~~l~~~~~~~~~~~L~~---~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          80 GSAFVDLSTLELNKPTEVKLKLED---PNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEEEHHHcCCCCCeEEEEECCC---CCCccCceEEEEEEEEC
Confidence            99999998876432 223344411   11135789999999873

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>KOG1030|consensus

Probab=99.75  E-value=7.4e-18  Score=150.03  Aligned_cols=91  Identities=27%  Similarity=0.468  Sum_probs=83.9

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      .+++|.|++|.||..+|..+++||||++.+|+++.+|+  ++.+++||+||+.|.|.+.. ....|+++|||+|.+++||
T Consensus         6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~--~v~~n~NPeWNe~ltf~v~d-~~~~lkv~VyD~D~fs~dD   82 (168)
T KOG1030|consen    6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTR--VVYKNLNPEWNEELTFTVKD-PNTPLKVTVYDKDTFSSDD   82 (168)
T ss_pred             eEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeee--eecCCCCCcccceEEEEecC-CCceEEEEEEeCCCCCccc
Confidence            57899999999999999889999999999999999886  68999999999999999984 4678999999999999999


Q ss_pred             eeEEEEeecccccc
Q psy4890         300 YIGMTEMDLESRFY  313 (364)
Q Consensus       300 ~IGet~IdLenr~~  313 (364)
                      +||++.|+|...+-
T Consensus        83 ~mG~A~I~l~p~~~   96 (168)
T KOG1030|consen   83 FMGEATIPLKPLLE   96 (168)
T ss_pred             ccceeeeccHHHHH
Confidence            99999999987653

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.73  E-value=6.3e-17  Score=139.53  Aligned_cols=119  Identities=22%  Similarity=0.358  Sum_probs=91.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEe-ecCC--------CCeEEEEEEe
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQG-SFPT--------DAKLTVEIKD  291 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v-~~p~--------~~~L~V~V~D  291 (364)
                      .|+|+|++|++|+++|..|.+||||++.+++...+|  .++.+++||.||+.|.|.+ .++.        ...|.|+|||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT--~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d   79 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQET--EVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD   79 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEe--eeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence            578999999999999999999999999998766555  5689999999999999974 3221        2579999999


Q ss_pred             cCCCCCCceeEEEEeeccccccccCCCccccccccccC--CCCCceEEEEEEEE
Q psy4890         292 HDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEV--SGSSPGEVLPGITL  343 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~--~G~~~GEIllSL~f  343 (364)
                      +|..++|++||++.+.......... ..... ++|+.+  .|..+|||++++.+
T Consensus        80 ~d~~~~d~~iG~~~i~~~~~~~~~~-~~~~~-~~W~~L~~~~~~~Geil~~~~~  131 (135)
T cd04017          80 QDSVGKDEFLGRSVAKPLVKLDLEE-DFPPK-LQWFPIYKGGQSAGELLAAFEL  131 (135)
T ss_pred             CcCCCCCccceEEEeeeeeecccCC-CCCCC-ceEEEeecCCCchhheeEEeEE
Confidence            9999999999999985432222110 11111 455543  46789999999987

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.72  E-value=1.5e-16  Score=135.85  Aligned_cols=120  Identities=17%  Similarity=0.218  Sum_probs=92.2

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      ..|+|.|++|+||++.   +.+||||++.+++... .+|++ .+++||.|||.|.|.+..+....|.|.|||++..++|+
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~-~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKV-ARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeE-EEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            3589999999999875   5789999999987432 23444 56899999999999876454467999999999999999


Q ss_pred             eeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEEee
Q psy4890         300 YIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       300 ~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~  345 (364)
                      +||++.|+|.++..+ ....|..|.+.. .......|+|+++|+|..
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~-~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSAS-PLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCC-CCCCCcCcEEEEEEEEEc
Confidence            999999999987543 223466664331 112456899999999964

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.72  E-value=6.2e-17  Score=139.23  Aligned_cols=114  Identities=25%  Similarity=0.257  Sum_probs=89.5

Q ss_pred             EEEEEEEecC---CCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCC--
Q psy4890         222 IRVYIVRAYG---LHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVS--  296 (364)
Q Consensus       222 LrV~Vv~A~d---L~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~is--  296 (364)
                      |.|+|++|+|   |+.+|..|.+||||++++++++.+|  +++.+++||+|||+|.|.+..+. ..|.|+|||+|.++  
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rT--k~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~~   78 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRT--RTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHWK   78 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEc--CcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcccc
Confidence            6899999999   8899999999999999999887765  55789999999999999997544 58999999999874  


Q ss_pred             ----CCceeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEE
Q psy4890         297 ----KDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLP  339 (364)
Q Consensus       297 ----kDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIll  339 (364)
                          +|++||++.|+|..+... ....|..|.... ...+...|+|..
T Consensus        79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~~~~~~g~l~~  125 (126)
T cd08379          79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN-PSGVKKMGELEC  125 (126)
T ss_pred             ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC-CCCccCCcEEEe
Confidence                899999999999887543 223455552111 112346777764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.72  E-value=1.2e-16  Score=135.12  Aligned_cols=121  Identities=19%  Similarity=0.334  Sum_probs=96.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      .++|+|++|++|++.+.+|.+||||++.+++. ....+|.++.+++||.||+.|.|.+..+....|.|+|||+|..++|+
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            57899999999999999999999999988643 33346677899999999999999987665788999999999999999


Q ss_pred             eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      +||++.++|.+...+..+..   +..++.+.  .+|+|++.+++++.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~---~~~w~~l~--~~g~i~l~~~~~~~  123 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLP---REIWLDLD--TQGRLLLRVSMEGE  123 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCC---ceEEEEcC--CCCeEEEEEEEeee
Confidence            99999999987654320111   12334443  37999999999665

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.72  E-value=9.2e-17  Score=136.67  Aligned_cols=121  Identities=20%  Similarity=0.307  Sum_probs=95.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      |.|+|++|+||+.  ..|.+||||++.++......+|.++.+++||+||+.|.|.+. +....|.|+|||+|..++|++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS-PNSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeC-CCCCEEEEEEEECCCCCCCceE
Confidence            3588999999988  679999999999974333346677899999999999999985 4567899999999999999999


Q ss_pred             EEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890         302 GMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       302 Get~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      |++.++|..+... ....+..|++... ..+..+|+|.+++.|.+.
T Consensus        78 G~~~i~l~~l~~~~~~~~~~~L~~~~~-~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          78 GLAIVPFDELRKNPSGRQIFPLQGRPY-EGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEEEeHHHhccCCceeEEEEecCCCC-CCCCcceEEEEEEEEecc
Confidence            9999999886533 2234555533221 134579999999999654

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.71  E-value=1.9e-16  Score=134.06  Aligned_cols=117  Identities=24%  Similarity=0.369  Sum_probs=92.3

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      |.|+|++|++|++.|.+|.+||||++.+++... .+|.++.+++||+||+.|.|.+. +....|.|.|||++.+++|++|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~kT~v~~~t~nP~Wne~f~~~~~-~~~~~l~v~v~d~~~~~~d~~i   79 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVI-IRTATVWKTLNPFWGEEYTVHLP-PGFHTVSFYVLDEDTLSRDDVI   79 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEee-eeeeeEcCCCCCcccceEEEeeC-CCCCEEEEEEEECCCCCCCCEE
Confidence            578999999999999999999999999986543 35567899999999999999985 3457899999999999999999


Q ss_pred             EEEEeeccccccc--cCCCccccccccccCCCCCceEEEEEEE
Q psy4890         302 GMTEMDLESRFYS--RHRGSCARWTSDLEVSGSSPGEVLPGIT  342 (364)
Q Consensus       302 Get~IdLenr~~s--~~~a~~gL~p~~y~~~G~~~GEIllSL~  342 (364)
                      |++.++++...-.  ....|..|.+  ....+...|+|++++.
T Consensus        80 G~~~~~~~~~~~~~~~~~~W~~L~~--~~~~~~~~G~i~l~~~  120 (121)
T cd04054          80 GKVSLTREVISAHPRGIDGWMNLTE--VDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEcHHHhccCCCCCCcEEECee--eCCCCccccEEEEEEE
Confidence            9999998766421  1233454422  1223346899999875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.71  E-value=4.2e-17  Score=138.82  Aligned_cols=95  Identities=16%  Similarity=0.208  Sum_probs=80.2

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD  291 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D  291 (364)
                      .|....|.|.|++|++|+   ..|.+||||++.+..  +..+.+|+++++|+||+|||+|.|.++..  ....|.|+|||
T Consensus        10 ~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d   86 (118)
T cd08677          10 DKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC   86 (118)
T ss_pred             cCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence            567778899999999999   347799999999963  33355678899999999999999997542  36789999999


Q ss_pred             cCCCCCCceeEEEEeecccccc
Q psy4890         292 HDSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLenr~~  313 (364)
                      +|.++++|+||++.++|.+.-.
T Consensus        87 ~Drfs~~d~IG~v~l~l~~~~~  108 (118)
T cd08677          87 CDRFSRHSTLGELRLKLADVSM  108 (118)
T ss_pred             CCCCCCCceEEEEEEccccccC
Confidence            9999999999999999987643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.71  E-value=1.6e-16  Score=132.78  Aligned_cols=114  Identities=25%  Similarity=0.419  Sum_probs=94.0

Q ss_pred             EEEEEEEEecCCCCCCC------CCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC
Q psy4890         221 TIRVYIVRAYGLHPKDK------DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS  294 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~------~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~  294 (364)
                      +|+|+|++|++|++.|.      .|.+||||++.++++..+|  .++.+++||.||+.|.|.+..+....|.|+|||++.
T Consensus         2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT--~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~   79 (121)
T cd08391           2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKS--KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP   79 (121)
T ss_pred             eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEc--cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence            57899999999999875      3789999999998865554  568899999999999999976677899999999998


Q ss_pred             CCCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         295 VSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      . +|++||++.++|.++....      ....+|.+.+..+|+|++++.+
T Consensus        80 ~-~~~~iG~~~i~l~~l~~~~------~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          80 D-KDDFLGRLSIDLGSVEKKG------FIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             C-CCCcEEEEEEEHHHhcccC------ccceEEECcCCCCceEEEEEeC
Confidence            8 8999999999998875321      1144555566678999998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.71  E-value=3.7e-16  Score=133.24  Aligned_cols=120  Identities=17%  Similarity=0.331  Sum_probs=96.8

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      .+++|+|++|++|...|..|.+||||++.++++..+|  .++.+++||+||+.|.|.+.. ....|.|+|||++.+ +|+
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT--~v~~~t~nP~Wne~f~f~~~~-~~~~l~i~V~d~~~~-~d~   78 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRS--PVQKDTLSPEFDTQAIFYRKK-PRSPIKIQVWNSNLL-CDE   78 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEe--CccCCCCCCcccceEEEEecC-CCCEEEEEEEECCCC-CCC
Confidence            5789999999999999999999999999999877655  568999999999999998764 477899999999987 589


Q ss_pred             eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      +||++.+++.+.. +....+..|.......++...|+|.+++.+.
T Consensus        79 ~lG~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~  122 (126)
T cd04046          79 FLGQATLSADPND-SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS  122 (126)
T ss_pred             ceEEEEEecccCC-CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence            9999999997642 2223344443222234678899999998874

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=9.6e-17  Score=136.92  Aligned_cols=91  Identities=20%  Similarity=0.284  Sum_probs=77.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEE-C----CEEeeeeeeeecCCCCCccceEEEEEeec---CCCCeEEEEEEecC
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKT-G----SVEINDRENYVTNQINPYFGRHFEIQGSF---PTDAKLTVEIKDHD  293 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~L-g----~~~~~tkt~~i~~tlnP~wne~Fef~v~~---p~~~~L~V~V~D~D  293 (364)
                      |+|.|++|++|++.+ .|.+||||+|++ |    .+..+.+|+++.+++||+|||.|.|.+..   +....|.|.|||+|
T Consensus         2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            689999999999988 499999999997 3    23334567788999999999999999863   34567999999999


Q ss_pred             CCCCCceeEEEEeecccccc
Q psy4890         294 SVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr~~  313 (364)
                      ..++|++||++.++|.+...
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~  100 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQ  100 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcC
Confidence            88899999999999988764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.70  E-value=1.1e-16  Score=133.38  Aligned_cols=100  Identities=23%  Similarity=0.348  Sum_probs=84.5

Q ss_pred             EEEEEEEEecCCCCCCCC-CCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEecCCC
Q psy4890         221 TIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKDHDSV  295 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D~D~i  295 (364)
                      +|+|+|++|++|++.|.. |.+||||++.+... +...+|+++.+++||+||+.|.|.+..+   ....|.|+|||+|.+
T Consensus         2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~   81 (111)
T cd04041           2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF   81 (111)
T ss_pred             EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence            589999999999999988 99999999998532 2334567889999999999999988655   357899999999999


Q ss_pred             CCCceeEEEEeeccccccccCCCcccc
Q psy4890         296 SKDDYIGMTEMDLESRFYSRHRGSCAR  322 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s~~~a~~gL  322 (364)
                      ++||+||++.++|.++.  ..+.|.++
T Consensus        82 ~~dd~lG~~~i~l~~l~--~~~~~~~~  106 (111)
T cd04041          82 TADDRLGRVEIDLKELI--EDRNWMGR  106 (111)
T ss_pred             CCCCcceEEEEEHHHHh--cCCCCCcc
Confidence            99999999999998875  35556655

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.70  E-value=4.1e-16  Score=130.84  Aligned_cols=120  Identities=24%  Similarity=0.324  Sum_probs=93.6

Q ss_pred             EEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCC
Q psy4890         220 VTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD  298 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskD  298 (364)
                      ..|+|+|++|++|+..+ ..|.+||||++.+++.....+|.++.+++||.||+.|.|.+. +....|.|+|||++..++|
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence            35889999999999765 457799999999986212234466899999999999999987 5678999999999999999


Q ss_pred             ceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         299 DYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       299 D~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      ++||++.++|.++.......  .+ ......++..+|+|+++|+|
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~--~~-~~~~~~~~k~~G~i~~~l~~  122 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQE--NL-TKNLLRNGKPVGELNYDLRF  122 (124)
T ss_pred             ceeEEEEEEHHHhccCcccc--Cc-chhhhcCCccceEEEEEEEe
Confidence            99999999999876432211  11 11112367789999999998

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.69  E-value=1.5e-16  Score=135.34  Aligned_cols=94  Identities=22%  Similarity=0.281  Sum_probs=80.4

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEe-e--cCCCCeEEEEEEec
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQG-S--FPTDAKLTVEIKDH  292 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v-~--~p~~~~L~V~V~D~  292 (364)
                      ...|+|.|++|+||++.+ .|.+||||++.+.+   ...+.+|+++++++||+|||+|.|.+ .  ......|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            355889999999999999 99999999999963   22344667889999999999999986 2  23577999999999


Q ss_pred             CCCCCCceeEEEEeecccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~  313 (364)
                      |.+++|++||++.|+|.+...
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~  111 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDL  111 (122)
T ss_pred             CCCcCCcEEEEEEEecccccc
Confidence            999999999999999988764

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.69  E-value=7e-16  Score=128.91  Aligned_cols=117  Identities=23%  Similarity=0.350  Sum_probs=94.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      .|+|+|++|+||+..+..+.+||||++.+++...+  |+++.++.||.|+++|.|.+.. ....|.|+|||++..++|++
T Consensus         2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~--T~~~~~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~~~~~~~   78 (119)
T cd08377           2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQ--THTIYKTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDKDKKPEF   78 (119)
T ss_pred             EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeee--cceecCCcCCccCcEEEEEecC-cCCEEEEEEEECCCCCCCce
Confidence            47899999999999999999999999999876654  4668899999999999999853 36789999999999899999


Q ss_pred             eEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         301 IGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       301 IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      ||++.++|.++..+ ...|..|...  ...+..+|+|++++.+
T Consensus        79 iG~~~~~l~~~~~~-~~~~~~l~~~--~~~~~~~G~i~l~~~~  118 (119)
T cd08377          79 LGKVAIPLLSIKNG-ERKWYALKDK--KLRTRAKGSILLEMDV  118 (119)
T ss_pred             eeEEEEEHHHCCCC-CceEEECccc--CCCCceeeEEEEEEEe
Confidence            99999999876432 2345555221  1234579999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.68  E-value=5.5e-16  Score=131.63  Aligned_cols=116  Identities=15%  Similarity=0.269  Sum_probs=91.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCC--C
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSK--D  298 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~isk--D  298 (364)
                      |+|+|++|++|++.+..|.+||||++.+++ +..  +|.++.+++||.||+.|.|.+..  ...|.|+|||++.+++  |
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~--kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d   77 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTH--STDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ   77 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccce--EccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence            689999999999999999999999999963 333  44678999999999999999853  7899999999998875  5


Q ss_pred             ceeEEEEeeccccccccC--CCccccccccccCCCCCceEEEEEE
Q psy4890         299 DYIGMTEMDLESRFYSRH--RGSCARWTSDLEVSGSSPGEVLPGI  341 (364)
Q Consensus       299 D~IGet~IdLenr~~s~~--~a~~gL~p~~y~~~G~~~GEIllSL  341 (364)
                      ++||++.+++.++.....  ..|+.|++......+...|+|.+++
T Consensus        78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             ceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            899999999998864432  2344443322222456688988876

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=7.8e-16  Score=131.39  Aligned_cols=115  Identities=22%  Similarity=0.380  Sum_probs=90.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC-----
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV-----  295 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i-----  295 (364)
                      .|+|+|++|++|+..|..|.+||||++.+++...+  |.++.+++||.||+.|.|.+..+ ...|.|+|||+|..     
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~k--T~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~   78 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKR--TKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL   78 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeee--cceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence            47899999999999999999999999999876554  45688999999999999998644 56899999999853     


Q ss_pred             ------CCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEE
Q psy4890         296 ------SKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGI  341 (364)
Q Consensus       296 ------skDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL  341 (364)
                            ++|++||++.|+|.+.. .....|+.|.+.  ...+..+|+|++++
T Consensus        79 ~~~~~~~~~~~iG~~~i~l~~~~-~~~~~w~~L~~~--~~~~~~~G~i~~~~  127 (127)
T cd04027          79 KQKFTRESDDFLGQTIIEVRTLS-GEMDVWYNLEKR--TDKSAVSGAIRLHI  127 (127)
T ss_pred             ceeccccCCCcceEEEEEhHHcc-CCCCeEEECccC--CCCCcEeEEEEEEC
Confidence                  57999999999998752 233345555332  12335699999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.68  E-value=1.3e-15  Score=130.37  Aligned_cols=118  Identities=18%  Similarity=0.332  Sum_probs=93.3

Q ss_pred             EEEEEEEEEecCCCCCCCC----------CCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEE
Q psy4890         220 VTIRVYIVRAYGLHPKDKD----------GKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEI  289 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~----------G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V  289 (364)
                      ..|+|+|++|++|.+.|.+          |.+||||++.++++.. .+|.++.+++||.||++|+|.+.  ....|.|.|
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~-~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v   80 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI-GKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTV   80 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE-eEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEE
Confidence            5689999999999998863          6899999999987553 24456788999999999999985  568899999


Q ss_pred             EecCCCCCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890         290 KDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       290 ~D~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      ||++.+++|++||++.++|.++.... ...  . ..++.++  .+|+|++++++.+.
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~~-~~~--~-~~w~~L~--~~G~l~l~~~~~~~  131 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQRG-SGS--F-DLWVDLE--PQGKLHVKIELKGS  131 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhcccC-CCc--c-cEEEEcc--CCcEEEEEEEEecC
Confidence            99999999999999999999876420 110  1 2233333  57999999999653

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.67  E-value=2.1e-16  Score=134.79  Aligned_cols=98  Identities=18%  Similarity=0.293  Sum_probs=82.0

Q ss_pred             ceeEEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK  290 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~  290 (364)
                      +....|+|+|++|+||+++|.. |.+||||++.+.+.   ..+.+|+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            3445688999999999999986 89999999998521   2334678899999999999999997532  3578999999


Q ss_pred             ecCCCCCCceeEEEEeeccccccc
Q psy4890         291 DHDSVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLenr~~s  314 (364)
                      |+|.+++|++||++.|+|.+...+
T Consensus        92 d~~~~~~~~~iG~~~i~L~~~~~~  115 (125)
T cd08393          92 HRDSLGRNSFLGEVEVDLGSWDWS  115 (125)
T ss_pred             eCCCCCCCcEeEEEEEecCccccC
Confidence            999999999999999999887543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.67  E-value=4.8e-16  Score=136.95  Aligned_cols=93  Identities=19%  Similarity=0.290  Sum_probs=79.9

Q ss_pred             EEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEE-ecCC
Q psy4890         220 VTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIK-DHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~-D~D~  294 (364)
                      ..|.|.|++|+||++.+ .+|.+||||++++...   ..+.||+++++++||+|||+|.|.+. +.+..|.|+|| |++.
T Consensus        29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~  107 (146)
T cd04028          29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence            35789999999999874 6789999999999532   23556778999999999999999998 67889999999 6888


Q ss_pred             CCCCceeEEEEeecccccc
Q psy4890         295 VSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~  313 (364)
                      ++++++||++.|+|...-.
T Consensus       108 ~~~~~~iG~~~i~L~~l~~  126 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDL  126 (146)
T ss_pred             CCCCceEEEEEEEcccccC
Confidence            9999999999999988643

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.67  E-value=7.2e-16  Score=136.04  Aligned_cols=118  Identities=19%  Similarity=0.280  Sum_probs=90.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeec-----------C----CCC
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSF-----------P----TDA  283 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~-----------p----~~~  283 (364)
                      |+|.|++|+||++  .+|.+||||++.+...   ....+|+++.+++||+|||.|.|.+..           |    ...
T Consensus         2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            6899999999998  5799999999999652   233456778999999999999999852           2    235


Q ss_pred             eEEEEEEecCCCCCCceeEEEEeeccccccc--cCCCccccccccccC--------CCCCceEEEEEE
Q psy4890         284 KLTVEIKDHDSVSKDDYIGMTEMDLESRFYS--RHRGSCARWTSDLEV--------SGSSPGEVLPGI  341 (364)
Q Consensus       284 ~L~V~V~D~D~iskDD~IGet~IdLenr~~s--~~~a~~gL~p~~y~~--------~G~~~GEIllSL  341 (364)
                      .|.|.|||++..++|++||++.|+|.++..+  ....|+.|++..-..        .+..+|.+++.+
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI  147 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence            7999999999999999999999999987654  235577775442111        124577776654

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.66  E-value=9.8e-16  Score=129.57  Aligned_cols=109  Identities=28%  Similarity=0.493  Sum_probs=91.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeec-CCCCCccceEEEEEeecC---CCCeEEEEEEecCCCC
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT-NQINPYFGRHFEIQGSFP---TDAKLTVEIKDHDSVS  296 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~-~tlnP~wne~Fef~v~~p---~~~~L~V~V~D~D~is  296 (364)
                      .|+|+|++|++|++.+..+.+||||+++++++..++  .++. +++||.||+.|.|.+..+   ....|.|+|||++.++
T Consensus         2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T--~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   79 (124)
T cd04049           2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKS--KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS   79 (124)
T ss_pred             eEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeee--eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence            478999999999999989999999999998766544  3445 589999999999999866   3678999999999999


Q ss_pred             CCceeEEEEeeccccccc-cCCCccccccccccCCC
Q psy4890         297 KDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSG  331 (364)
Q Consensus       297 kDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G  331 (364)
                      +|++||++.++|.++... ....|..|+|..|++.+
T Consensus        80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~~~~  115 (124)
T cd04049          80 DDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNVVL  115 (124)
T ss_pred             CCCeEEEEEEEhHHhhhCCCCcCceEeeccceEEEE
Confidence            999999999999988654 44568888888887643

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.65  E-value=7.9e-16  Score=129.67  Aligned_cols=94  Identities=23%  Similarity=0.396  Sum_probs=79.8

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEe
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKD  291 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D  291 (364)
                      ....|+|+|++|+||++.+.+|.+||||++.+.+   .....+|.++++++||+||++|.|.+..+   ....|.|+|||
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d   93 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence            4456889999999999999999999999999864   22344567789999999999999986432   36789999999


Q ss_pred             cCCCCCCceeEEEEeecccc
Q psy4890         292 HDSVSKDDYIGMTEMDLESR  311 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLenr  311 (364)
                      ++..++|++||++.++|.+.
T Consensus        94 ~~~~~~~~~iG~~~i~l~~~  113 (125)
T cd04031          94 YDRDGENDFLGEVVIDLADA  113 (125)
T ss_pred             CCCCCCCcEeeEEEEecccc
Confidence            99999999999999999883

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.65  E-value=5.6e-16  Score=133.24  Aligned_cols=98  Identities=14%  Similarity=0.238  Sum_probs=82.5

Q ss_pred             ceeEEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK  290 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~  290 (364)
                      +....|.|.|++|+||++.|.. |.+||||++.+.+.   ..+.||+++++++||+|||+|.|.+...  ....|.|+||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            3445788999999999999975 99999999998532   2344677899999999999999997542  2579999999


Q ss_pred             ecCCCCCCceeEEEEeeccccccc
Q psy4890         291 DHDSVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLenr~~s  314 (364)
                      |++.++++++||++.|+|.+..++
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~~~  115 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWDFE  115 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcccC
Confidence            999999999999999999987654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.65  E-value=1.4e-15  Score=126.98  Aligned_cols=91  Identities=15%  Similarity=0.311  Sum_probs=78.1

Q ss_pred             EEEEEEEEecCCCCCCCC----CCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEecCCC
Q psy4890         221 TIRVYIVRAYGLHPKDKD----GKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKDHDSV  295 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~----G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D~D~i  295 (364)
                      +|+|+|++|++|++.+..    +.+||||++.++++..+  |+++.+++||+||+.|.|.+... ....|.|+|||+|..
T Consensus         2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~k--T~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039           2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFR--TSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             EEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEe--eeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence            588999999999998742    35899999999876654  56789999999999999988643 345899999999999


Q ss_pred             CCCceeEEEEeecccccc
Q psy4890         296 SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       296 skDD~IGet~IdLenr~~  313 (364)
                      ++|++||++.++|.++.-
T Consensus        80 ~~dd~IG~~~l~L~~l~~   97 (108)
T cd04039          80 SFNDYVATGSLSVQELLN   97 (108)
T ss_pred             CCCcceEEEEEEHHHHHh
Confidence            999999999999998753

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.65  E-value=7.1e-16  Score=130.43  Aligned_cols=97  Identities=25%  Similarity=0.363  Sum_probs=81.8

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDS  294 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~  294 (364)
                      ....|+|+|++|+||++.+.+|.+||||++.+... ....+|+++++++||+||++|.|.+...  ....|.|+|||+|.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~   93 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence            34568899999999999999999999999998421 2234567789999999999999997643  25689999999999


Q ss_pred             CCCCceeEEEEeeccccccc
Q psy4890         295 VSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s  314 (364)
                      +++|++||++.|+|.++..+
T Consensus        94 ~~~~~~iG~~~i~l~~~~~~  113 (124)
T cd08387          94 FSRDECIGVVELPLAEVDLS  113 (124)
T ss_pred             CCCCceeEEEEEecccccCC
Confidence            99999999999999988643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.65  E-value=9.2e-16  Score=131.04  Aligned_cols=98  Identities=15%  Similarity=0.271  Sum_probs=80.7

Q ss_pred             ceeEEEEEEEEEecCCCCCCC-CCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDK-DGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK  290 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~-~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~  290 (364)
                      +....|.|.|++|+||++.+. .|.+||||++.+..   ...+.+|+++++++||+|||+|.|.+...  .+..|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            344558899999999999876 58999999999852   12234567889999999999999998643  3668999999


Q ss_pred             ecCCCCCCceeEEEEeeccccccc
Q psy4890         291 DHDSVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLenr~~s  314 (364)
                      |+|.+++|++||++.|+|.+....
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~  115 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFD  115 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCccccc
Confidence            999999999999999999887553

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.65  E-value=1.3e-15  Score=134.81  Aligned_cols=115  Identities=25%  Similarity=0.313  Sum_probs=90.1

Q ss_pred             EEEEEEEecCCCCCCCCC--------------CCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEE
Q psy4890         222 IRVYIVRAYGLHPKDKDG--------------KCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLT  286 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G--------------~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~  286 (364)
                      +.|+|++|++|+++|..+              .+||||+|.+++++.+|  +++.+++||+|||+|.|.+..| ....|.
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT--~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKT--SVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeec--ceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            578999999999988654              68999999999887654  6689999999999999997655 366899


Q ss_pred             EEEEecCCCCCCceeEEEEeeccccccccCCCccc-cccccccCCCCCceEEE
Q psy4890         287 VEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCA-RWTSDLEVSGSSPGEVL  338 (364)
Q Consensus       287 V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~g-L~p~~y~~~G~~~GEIl  338 (364)
                      |+|||+|..++||+||++.|+|.++.......+.. +.|.|+.+-|..++...
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~~  132 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYSL  132 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccccc
Confidence            99999999999999999999998765432222211 13566766666666543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.64  E-value=1e-15  Score=129.48  Aligned_cols=116  Identities=17%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeee-cCCCCCccceEEEEEeecCC----CCeEEEEEEecCC
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYV-TNQINPYFGRHFEIQGSFPT----DAKLTVEIKDHDS  294 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i-~~tlnP~wne~Fef~v~~p~----~~~L~V~V~D~D~  294 (364)
                      +|+|+|++|++|+..+..|.+||||++++++ ++.+|  .++ .++.||.||+.|.|.+..+.    ...|.|+|||++.
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T--~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQST--PVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCccccc--ccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence            3789999999999999899999999999987 55544  344 46899999999999997653    6889999999999


Q ss_pred             CCCCceeEEEEeeccccccccCCCcccccccccc---CCCCCceEEEE
Q psy4890         295 VSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLE---VSGSSPGEVLP  339 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~---~~G~~~GEIll  339 (364)
                      +++|++||++.|+|.+......... .+++.+|.   .+|..+|+|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~-~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAG-ELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCC-cceeEEEEeECCCCCcCeEEeC
Confidence            8899999999999998865422110 12233343   36788999864

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.64  E-value=9.4e-16  Score=131.40  Aligned_cols=98  Identities=12%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE----EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEE
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV----EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEI  289 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~----~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V  289 (364)
                      .+....|.|.|++|+||++.+..|.+||||++.+.+.    ..+.+|.++.+++||+|||+|.|.+...  .+..|.|+|
T Consensus        10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V   89 (124)
T cd08680          10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV   89 (124)
T ss_pred             CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence            4556678999999999999998999999999998532    2355677888999999999999997542  478999999


Q ss_pred             EecCCCCCCceeEEEEeecccccc
Q psy4890         290 KDHDSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       290 ~D~D~iskDD~IGet~IdLenr~~  313 (364)
                      ||+|..+++++||++.|+|.+.-.
T Consensus        90 ~~~~~~~~~~~lG~~~i~L~~~~~  113 (124)
T cd08680          90 CSVGPDQQEECLGGAQISLADFES  113 (124)
T ss_pred             EeCCCCCceeEEEEEEEEhhhccC
Confidence            999999999999999999998744

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.64  E-value=7e-15  Score=130.76  Aligned_cols=121  Identities=20%  Similarity=0.264  Sum_probs=90.5

Q ss_pred             eEEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEECCEEeeeeeeeecCCCCCc
Q psy4890         219 NVTIRVYIVRAYGLHPKD------------------------------KDGKCDPYIVLKTGSVEINDRENYVTNQINPY  268 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D------------------------------~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~  268 (364)
                      ...|+|+|++|++|+.+|                              ..|.+||||++++++.+. .+|+++.++.||+
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~-~rT~v~~~~~nP~   84 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV-ARTRVIENSENPV   84 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe-eEEEEeCCCCCCc
Confidence            467889999999999887                              356789999999987543 2446688999999


Q ss_pred             cceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEE
Q psy4890         269 FGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       269 wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      |||.|.|.+..+ ...|.|.|||+|.++ +++||++.|+|.++..+. ...|..|... ........|+|++++.|
T Consensus        85 WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~-~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          85 WNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS-NGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             cceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC-CCCCCCCCCEEEEEEEE
Confidence            999999998643 468999999999885 689999999998875321 1234444111 01111346899999988

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.64  E-value=1.9e-15  Score=125.76  Aligned_cols=91  Identities=19%  Similarity=0.331  Sum_probs=79.9

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCC----CCeEEEEEEec
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT----DAKLTVEIKDH  292 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~----~~~L~V~V~D~  292 (364)
                      |+.+.|+|+|++|++|+    +|.+||||++++++++.+|  +++.+++||.||+.|.|.+..+.    +..|.|+|||+
T Consensus         1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT--~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~   74 (111)
T cd04011           1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYT--SVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDS   74 (111)
T ss_pred             CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeee--eEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence            46788999999999998    5889999999999876654  56889999999999999986554    57899999999


Q ss_pred             CCCCCCceeEEEEeecccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~  313 (364)
                      +.+++|++||++.++|.+...
T Consensus        75 ~~~~~~~~iG~~~i~l~~v~~   95 (111)
T cd04011          75 RSLRSDTLIGSFKLDVGTVYD   95 (111)
T ss_pred             cccccCCccEEEEECCccccC
Confidence            999999999999999998754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.64  E-value=1.7e-15  Score=126.15  Aligned_cols=90  Identities=27%  Similarity=0.448  Sum_probs=78.7

Q ss_pred             EEEEEEEecCCCCCCC-CCCCCcEEEEEECCEEeeeeeeeecCCCCCcc-ceEEEEEeecC--CCCeEEEEEEecCCCCC
Q psy4890         222 IRVYIVRAYGLHPKDK-DGKCDPYIVLKTGSVEINDRENYVTNQINPYF-GRHFEIQGSFP--TDAKLTVEIKDHDSVSK  297 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~-~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~w-ne~Fef~v~~p--~~~~L~V~V~D~D~isk  297 (364)
                      |+|+|++|++|++++. .|.+||||++.+++...+  |.++.+++||.| ||.|.|.+..+  .+..|.|+|||+|.+++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~k--T~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~   78 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYK--TDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA   78 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEe--cceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence            4789999999999884 789999999999885554  466889999999 99999998654  35789999999999999


Q ss_pred             CceeEEEEeecccccc
Q psy4890         298 DDYIGMTEMDLESRFY  313 (364)
Q Consensus       298 DD~IGet~IdLenr~~  313 (364)
                      |++||++.++|.++..
T Consensus        79 ~~~iG~~~~~l~~l~~   94 (110)
T cd08688          79 NDAIGKVYIDLNPLLL   94 (110)
T ss_pred             CCceEEEEEeHHHhcc
Confidence            9999999999998765

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.63  E-value=1.4e-15  Score=128.55  Aligned_cols=96  Identities=23%  Similarity=0.324  Sum_probs=81.0

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDS  294 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~  294 (364)
                      ....|+|+|++|+||++.+..|.+||||++.+.+ .....+|+++.+++||+||++|.|.+..+  ....|.|+|||+|.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~   93 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            3446889999999999999999999999999853 22334567789999999999999998643  35689999999999


Q ss_pred             CCCCceeEEEEeecccccc
Q psy4890         295 VSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~  313 (364)
                      +++|++||++.++|.++..
T Consensus        94 ~~~~~~lG~~~i~l~~~~~  112 (124)
T cd08385          94 FSKHDLIGEVRVPLLTVDL  112 (124)
T ss_pred             CCCCceeEEEEEecCcccC
Confidence            9999999999999998644

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.63  E-value=2.4e-15  Score=124.01  Aligned_cols=87  Identities=21%  Similarity=0.337  Sum_probs=78.3

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      |.|+|++|++|++.+..|.+||||+++++++..+|  .++.++.||+||+.|.|.+..|....|.|+|||++.   |++|
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT--~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~i   76 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKS--KVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSL   76 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeC--ccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCcc
Confidence            67999999999999989999999999999866655  567899999999999999988778899999999986   8999


Q ss_pred             EEEEeecccccc
Q psy4890         302 GMTEMDLESRFY  313 (364)
Q Consensus       302 Get~IdLenr~~  313 (364)
                      |++.|+|.++..
T Consensus        77 G~~~i~l~~l~~   88 (105)
T cd04050          77 GSLTLPLSELLK   88 (105)
T ss_pred             EEEEEEHHHhhc
Confidence            999999988764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.62  E-value=2.3e-15  Score=129.11  Aligned_cols=96  Identities=23%  Similarity=0.326  Sum_probs=79.1

Q ss_pred             eeEEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEE-eec--CCCCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQ-GSF--PTDAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~-v~~--p~~~~L~V~V~D~  292 (364)
                      ....|+|+|++|+||++.+.. |.+||||++.+.+ ...+.||+++.+++||+|||+|.|. +..  .....|.++|||+
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~   93 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF   93 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence            445789999999999999886 9999999999853 2223356778999999999999994 431  2356799999999


Q ss_pred             CCCCCCceeEEEEeecccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~  313 (364)
                      |.+++|++||++.|+|.+...
T Consensus        94 d~~~~d~~lG~~~i~L~~l~~  114 (128)
T cd08388          94 DRYSRDDVIGEVVCPLAGADL  114 (128)
T ss_pred             CCCCCCceeEEEEEeccccCC
Confidence            999999999999999987754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.61  E-value=6.6e-15  Score=126.80  Aligned_cols=94  Identities=27%  Similarity=0.352  Sum_probs=80.3

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEe-ecCCCCeEEEEEEecCC
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQG-SFPTDAKLTVEIKDHDS  294 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v-~~p~~~~L~V~V~D~D~  294 (364)
                      ..-...|+|+|++|++|+. +..|.+||||+|.++++..  +|.++.+++||+||+.|.|.. ..+....|.|+|||+|.
T Consensus        24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~--kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~  100 (127)
T cd04032          24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEK--RTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN  100 (127)
T ss_pred             cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccc--cCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence            3445688999999999974 6778999999999987744  556789999999999999974 44567899999999999


Q ss_pred             CCCCceeEEEEeeccccc
Q psy4890         295 VSKDDYIGMTEMDLESRF  312 (364)
Q Consensus       295 iskDD~IGet~IdLenr~  312 (364)
                      +++||+||++.++|....
T Consensus       101 ~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         101 GWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCeeEEEEEEecCCc
Confidence            999999999999998654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.61  E-value=2.2e-15  Score=130.99  Aligned_cols=93  Identities=15%  Similarity=0.190  Sum_probs=78.5

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD  291 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D  291 (364)
                      |....|.|.|++|+||++.|.+|.+||||++.+.+   ...+.+|.++++++||+|||+|.|.+...  .+..|.|+|||
T Consensus        12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~   91 (136)
T cd08406          12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE   91 (136)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence            34446889999999999999999999999999842   22345677889999999999999997542  46789999999


Q ss_pred             cCCCCCCceeEEEEeecc
Q psy4890         292 HDSVSKDDYIGMTEMDLE  309 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLe  309 (364)
                      +|.++++++||++.|...
T Consensus        92 ~d~~~~~~~iG~v~lg~~  109 (136)
T cd08406          92 STEDGKTPNVGHVIIGPA  109 (136)
T ss_pred             CCCCCCCCeeEEEEECCC
Confidence            999999999999999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.61  E-value=6.1e-15  Score=124.57  Aligned_cols=97  Identities=22%  Similarity=0.303  Sum_probs=80.1

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeec---CCCCeEEEEEEecC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSF---PTDAKLTVEIKDHD  293 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~---p~~~~L~V~V~D~D  293 (364)
                      ....|+|.|++|+||++.|.+|.+||||++.+.. .....+|.++++++||+||+.|.|.+..   .....|.++|||+|
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d   93 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence            3456889999999999999999999999999842 1223456778999999999999997531   23567999999999


Q ss_pred             CCCCCceeEEEEeeccccccc
Q psy4890         294 SVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr~~s  314 (364)
                      ..++|++||++.|+|.+...+
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~  114 (125)
T cd08386          94 RFSRNDPIGEVSLPLNKVDLT  114 (125)
T ss_pred             CCcCCcEeeEEEEecccccCC
Confidence            999999999999999987543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.60  E-value=5.2e-15  Score=131.37  Aligned_cols=96  Identities=25%  Similarity=0.413  Sum_probs=83.4

Q ss_pred             CCCcceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEE---------------------------eeeeeeeecCCC
Q psy4890         213 IDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE---------------------------INDRENYVTNQI  265 (364)
Q Consensus       213 p~~~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~---------------------------~~tkt~~i~~tl  265 (364)
                      +.+.|....|+|+|++|+||++.|.+|.+||||++.++...                           ...+|.++.+++
T Consensus        21 ~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl  100 (153)
T cd08676          21 REAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL  100 (153)
T ss_pred             HhcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence            56678889999999999999999999999999999986321                           124567789999


Q ss_pred             CCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeeccccc
Q psy4890         266 NPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRF  312 (364)
Q Consensus       266 nP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~  312 (364)
                      ||.||+.|.|.+..+....|.|+|||++    |++||++.++|.++.
T Consensus       101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         101 NPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             CCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence            9999999999997666789999999998    899999999998875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.60  E-value=1.4e-14  Score=123.04  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=89.3

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCCCCceeEE
Q psy4890         226 IVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGM  303 (364)
Q Consensus       226 Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~iskDD~IGe  303 (364)
                      |++|++|+.  ..|.+||||++.+++.+.+  |.++.++.||+||+.|.|.+..+  ....|.|+|||++..++|++||+
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~k--T~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~   77 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKK--TRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS   77 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeee--cceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence            789999998  6899999999999876554  46689999999999999998654  57889999999999999999999


Q ss_pred             EEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890         304 TEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       304 t~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      +.++|.++..+. ...+..|..   ......+|+|+++++|..-
T Consensus        78 ~~~~l~~l~~~~~~~~~~~L~~---~~~~~~~~~l~l~~~~~~~  118 (127)
T cd08373          78 ATVSLQDLVSEGLLEVTEPLLD---SNGRPTGATISLEVSYQPP  118 (127)
T ss_pred             EEEEhhHcccCCceEEEEeCcC---CCCCcccEEEEEEEEEeCC
Confidence            999998876431 112333311   1122357999999999443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.60  E-value=5.8e-15  Score=126.99  Aligned_cols=93  Identities=24%  Similarity=0.346  Sum_probs=80.2

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-----EeeeeeeeecCCCCCccceEEEEEeecC----CCCeEEEEEE
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-----EINDRENYVTNQINPYFGRHFEIQGSFP----TDAKLTVEIK  290 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-----~~~tkt~~i~~tlnP~wne~Fef~v~~p----~~~~L~V~V~  290 (364)
                      ..|+|.|++|++|++.+.+|.+||||++.+.+.     ....+|+++.+++||+|||.|.|.+...    ....|.|+||
T Consensus        16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~   95 (133)
T cd04009          16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK   95 (133)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence            457899999999999999999999999998632     2345677899999999999999998642    3568999999


Q ss_pred             ecCCCCCCceeEEEEeeccccc
Q psy4890         291 DHDSVSKDDYIGMTEMDLESRF  312 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLenr~  312 (364)
                      |+|.+++|++||++.++|.++.
T Consensus        96 d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          96 DYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             ecCCCCCCcEeEEEEEeHHHCC
Confidence            9999999999999999998875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.60  E-value=4.1e-15  Score=126.16  Aligned_cols=94  Identities=19%  Similarity=0.365  Sum_probs=78.0

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEecCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKDHDS  294 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D~D~  294 (364)
                      ...|.|.|++|+||++.+ .|.+||||++.+.+.   ..+.+|+++++++||+|||+|.|.+... ....|.|+|||++.
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            356889999999999998 899999999998642   2344667789999999999999998542 24578899999998


Q ss_pred             CC-CCceeEEEEeecccccc
Q psy4890         295 VS-KDDYIGMTEMDLESRFY  313 (364)
Q Consensus       295 is-kDD~IGet~IdLenr~~  313 (364)
                      .+ ++++||++.|+|.+...
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~  109 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVN  109 (119)
T ss_pred             CcCCCEEEEEEEecHHHhcc
Confidence            76 47999999999998753

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.60  E-value=1.1e-14  Score=128.12  Aligned_cols=89  Identities=31%  Similarity=0.537  Sum_probs=80.0

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      ..|+|.|++|++|+..+. +.+||||+++++++..+|  +++.+++||+||+.|.|.+..+ ...|.|+|||+|.+++|+
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT--~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd   77 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKT--RVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD   77 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEe--eeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence            368999999999999887 899999999999877665  5688999999999999999766 778999999999999999


Q ss_pred             eeEEEEeeccccc
Q psy4890         300 YIGMTEMDLESRF  312 (364)
Q Consensus       300 ~IGet~IdLenr~  312 (364)
                      +||++.++|.++.
T Consensus        78 ~iG~a~i~l~~l~   90 (145)
T cd04038          78 SMGEAEIDLEPLV   90 (145)
T ss_pred             EEEEEEEEHHHhh
Confidence            9999999998764

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.59  E-value=7.4e-15  Score=123.55  Aligned_cols=98  Identities=21%  Similarity=0.299  Sum_probs=81.2

Q ss_pred             ceeEEEEEEEEEecCCCCCC-CCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890         217 KVNVTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH  292 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~  292 (364)
                      +....++|+|++|+||++.+ ..|.+||||++.+.+ .....+|.++++++||+||+.|.|.+...  ....|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            34456889999999999998 689999999999842 12233567889999999999999997543  246899999999


Q ss_pred             CCCCCCceeEEEEeeccccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~s  314 (364)
                      +..++|++||++.++|.++...
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~  112 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLV  112 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecC
Confidence            9998999999999999987654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.59  E-value=6.2e-15  Score=126.12  Aligned_cols=95  Identities=21%  Similarity=0.357  Sum_probs=80.7

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK  290 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~  290 (364)
                      .+....|.|+|++|+||++.|..|.+||||++.+.+   .....+|.++.+++||+||++|.|.+..+  ....|.|+||
T Consensus         9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~   88 (133)
T cd08384           9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW   88 (133)
T ss_pred             cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence            345567889999999999999999999999999853   22344667889999999999999998653  3568999999


Q ss_pred             ecCCCCCCceeEEEEeeccc
Q psy4890         291 DHDSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLen  310 (364)
                      |+|..++|++||++.+++..
T Consensus        89 d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          89 DKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             eCCCCCCccEEEEEEEecCC
Confidence            99999999999999999974

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.59  E-value=5e-15  Score=126.25  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=79.7

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CEEeeeeeeeecCCCCCccceEEEEE-eec--CCCCeEEEEEEec
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG-SVEINDRENYVTNQINPYFGRHFEIQ-GSF--PTDAKLTVEIKDH  292 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg-~~~~~tkt~~i~~tlnP~wne~Fef~-v~~--p~~~~L~V~V~D~  292 (364)
                      +....|+|+|++|+||++.+.+|.+||||++.+. ....+.+|+++.+ +||+|||+|.|. +..  ..+..|.++|||+
T Consensus        13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            3445678999999999999999999999998764 3334445666666 999999999998 542  2477899999999


Q ss_pred             CCCCCCceeEEEEeeccccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~s  314 (364)
                      |.++++++||++.|+|.++...
T Consensus        92 ~~~~~~~~lG~~~i~L~~l~~~  113 (124)
T cd08389          92 ERMRKERLIGEKVVPLSQLNLE  113 (124)
T ss_pred             CCcccCceEEEEEEeccccCCC
Confidence            9999999999999999988543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.59  E-value=6.1e-15  Score=123.89  Aligned_cols=97  Identities=20%  Similarity=0.291  Sum_probs=80.4

Q ss_pred             ceeEEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890         217 KVNVTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK  290 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~  290 (364)
                      +....|+|+|++|+||++.+ ..|.+||||++.+.+.   ....+|+++.+++||+||++|.|.+...  ....|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            34456889999999999998 7889999999988421   1234567789999999999999987532  2568999999


Q ss_pred             ecCCCCCCceeEEEEeecccccc
Q psy4890         291 DHDSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLenr~~  313 (364)
                      |++.++++++||++.++|.++..
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~  113 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDL  113 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccc
Confidence            99999999999999999998754

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.58  E-value=1.4e-14  Score=120.53  Aligned_cols=112  Identities=24%  Similarity=0.360  Sum_probs=87.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      ++|.|++|++|+..+..|.+||||++.+.+... .+|..+.++.||.||++|.|.+.......+.|+|||++..++|++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~-~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV-FKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcc-eeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence            478899999999999889999999999965332 3456688999999999999998766678899999999999999999


Q ss_pred             EEEEeecccccccc-CCCccccccccccCCCCCceEEE
Q psy4890         302 GMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVL  338 (364)
Q Consensus       302 Get~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIl  338 (364)
                      |++.+++.++..+. ...+..|.+    .++...|.+.
T Consensus        80 G~~~~~l~~l~~~~~~~~~~~L~~----~g~~~~~~~~  113 (115)
T cd04040          80 GSAYIDLSDLEPEETTELTLPLDG----QGGGKLGAVF  113 (115)
T ss_pred             EEEEEEHHHcCCCCcEEEEEECcC----CCCccCceEE
Confidence            99999998875431 122343421    2345566654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.58  E-value=1.9e-14  Score=122.05  Aligned_cols=92  Identities=25%  Similarity=0.465  Sum_probs=80.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      +|+|+|++|++|++.+..|.+||||++.+++. ...+|.++.++.||.||+.|.|.+..+ ...|.|+|||++..++|++
T Consensus         2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~   79 (120)
T cd04045           2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI-VKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS   79 (120)
T ss_pred             eEEEEEEeeECCCCccCCCCcCCEEEEEECCE-EeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence            57899999999999999999999999999764 234456689999999999999988644 5689999999999999999


Q ss_pred             eEEEEeeccccccc
Q psy4890         301 IGMTEMDLESRFYS  314 (364)
Q Consensus       301 IGet~IdLenr~~s  314 (364)
                      ||++.++|.++.-.
T Consensus        80 IG~~~~~l~~l~~~   93 (120)
T cd04045          80 LGSVEINVSDLIKK   93 (120)
T ss_pred             eeEEEEeHHHhhCC
Confidence            99999999987643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.58  E-value=9.7e-15  Score=123.50  Aligned_cols=96  Identities=22%  Similarity=0.317  Sum_probs=80.6

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~  292 (364)
                      ....|+|+|++|+||++.+..+.+||||++.+.+.   ....+|+++.+++||+||+.|.|.+...  ....|.|.|||+
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~   93 (127)
T cd04030          14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS   93 (127)
T ss_pred             CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence            34557899999999999999999999999998531   3344667889999999999999998542  357899999999


Q ss_pred             CCC--CCCceeEEEEeecccccc
Q psy4890         293 DSV--SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       293 D~i--skDD~IGet~IdLenr~~  313 (364)
                      +.+  ++|++||++.|+|.++..
T Consensus        94 ~~~~~~~~~~iG~~~i~l~~l~~  116 (127)
T cd04030          94 KSFLSREKKLLGQVLIDLSDLDL  116 (127)
T ss_pred             CcccCCCCceEEEEEEecccccc
Confidence            975  789999999999998744

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>KOG1028|consensus

Probab=99.58  E-value=8.8e-15  Score=148.93  Aligned_cols=129  Identities=19%  Similarity=0.246  Sum_probs=100.9

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH  292 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~  292 (364)
                      ......+.|+|++|.+|++.|..|.+||||++++... +.+.+|++.++++||+|||+|.|.+...  ....|.++|||+
T Consensus       163 d~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~  242 (421)
T KOG1028|consen  163 DFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDF  242 (421)
T ss_pred             cccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEec
Confidence            3455677899999999999997788999999999753 3566778899999999999999996542  478999999999


Q ss_pred             CCCCCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEee
Q psy4890         293 DSVSKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq~  345 (364)
                      |++++||+||++.++|....... ..-|..+.+......+ ..|||+++|||..
T Consensus       243 drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~-~~gel~~sL~Y~p  295 (421)
T KOG1028|consen  243 DRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEE-LAGELLLSLCYLP  295 (421)
T ss_pred             CCcccccEEEEEEecCccccccccceeeeccccccCCccc-ccceEEEEEEeec
Confidence            99999999999999988765432 1235555443222222 2389999999943

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.57  E-value=8.5e-15  Score=126.02  Aligned_cols=93  Identities=24%  Similarity=0.406  Sum_probs=77.9

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--E-EeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--V-EINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~  292 (364)
                      ....|+|.|++|++|++.|..|.+||||++.++.  + ....+|.++.+++||.||+.|.|.+..+.  ...|.|+|||+
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~   92 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence            3456889999999999999999999999999842  2 23345667899999999999999985432  35799999999


Q ss_pred             CCCCCCceeEEEEeeccc
Q psy4890         293 DSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       293 D~iskDD~IGet~IdLen  310 (364)
                      |.+++|++||++.|++..
T Consensus        93 ~~~~~~~~iG~~~i~~~~  110 (136)
T cd08402          93 DRIGKNDPIGKVVLGCNA  110 (136)
T ss_pred             CCCCCCceeEEEEECCcc
Confidence            999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.57  E-value=7.4e-15  Score=128.22  Aligned_cols=94  Identities=14%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             ceeEEEEEEEEEecCCCCCCC--CCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEE
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDK--DGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEI  289 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~--~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V  289 (364)
                      |....|.|.|++|+||++.|.  .+.+||||++++..   +..+.+|.++.+++||+|||+|.|.++..  .+..|.|+|
T Consensus        12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V   91 (138)
T cd08407          12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence            445568899999999999984  35599999999864   22344677889999999999999998642  267899999


Q ss_pred             EecCCCCCCceeEEEEeeccc
Q psy4890         290 KDHDSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       290 ~D~D~iskDD~IGet~IdLen  310 (364)
                      ||+|.+++||+||++.+.+..
T Consensus        92 ~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          92 LNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             EeCCCCcCcceeceEEecCcC
Confidence            999999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.57  E-value=1.9e-14  Score=125.03  Aligned_cols=103  Identities=21%  Similarity=0.325  Sum_probs=83.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECC--EEeeeeeeeecCCCCCccceEEEEEeecC---------------CCCe
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--VEINDRENYVTNQINPYFGRHFEIQGSFP---------------TDAK  284 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~~~~tkt~~i~~tlnP~wne~Fef~v~~p---------------~~~~  284 (364)
                      |+|+|++|++|+.+ ..|.+||||++.++.  .....+|.+++++.||.||+.|.|.+..+               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            46899999999998 789999999999872  12234556788999999999999998765               4678


Q ss_pred             EEEEEEecCCCCCCceeEEEEeeccccccc-cCCCccccccc
Q psy4890         285 LTVEIKDHDSVSKDDYIGMTEMDLESRFYS-RHRGSCARWTS  325 (364)
Q Consensus       285 L~V~V~D~D~iskDD~IGet~IdLenr~~s-~~~a~~gL~p~  325 (364)
                      |.|+|||++..+++++||++.|+|.++... ....|+.|.+.
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999998999999999999987543 33456666443

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.56  E-value=1.5e-14  Score=124.63  Aligned_cols=92  Identities=21%  Similarity=0.318  Sum_probs=78.3

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--EE-eeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--VE-INDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHD  293 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~~-~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D  293 (364)
                      ...|.|+|++|++|++.|.+|.+||||++.+..  +. ...+|.++++++||.|+++|.|.+...  ....|.|+|||+|
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d   93 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence            345789999999999999999999999999842  22 345667889999999999999997532  3567899999999


Q ss_pred             CCCCCceeEEEEeeccc
Q psy4890         294 SVSKDDYIGMTEMDLES  310 (364)
Q Consensus       294 ~iskDD~IGet~IdLen  310 (364)
                      .+++|++||++.+++..
T Consensus        94 ~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          94 RVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CCCCCccEEEEEECCcC
Confidence            99999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.56  E-value=3.6e-14  Score=122.24  Aligned_cols=86  Identities=20%  Similarity=0.213  Sum_probs=71.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      .|.|+|++|++|+..+   ..||||+|++++++.+|  .+..+ .||.||+.|.|.+..+... |.|+|||+|.+ .||+
T Consensus         3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT--~v~~~-~nP~WnE~F~F~~~~~~~~-L~v~V~dkd~~-~DD~   74 (127)
T cd08394           3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTT--IAVRG-SQPCWEQDFMFEINRLDLG-LVIELWNKGLI-WDTL   74 (127)
T ss_pred             eEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEe--eECCC-CCCceeeEEEEEEcCCCCE-EEEEEEeCCCc-CCCc
Confidence            4779999999997654   46999999999876655  44555 5999999999999754444 99999999976 8999


Q ss_pred             eEEEEeeccccccc
Q psy4890         301 IGMTEMDLESRFYS  314 (364)
Q Consensus       301 IGet~IdLenr~~s  314 (364)
                      ||++.|+|.+.+.+
T Consensus        75 lG~v~i~L~~v~~~   88 (127)
T cd08394          75 VGTVWIPLSTIRQS   88 (127)
T ss_pred             eEEEEEEhHHcccC
Confidence            99999999988754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.55  E-value=2.1e-14  Score=123.29  Aligned_cols=93  Identities=18%  Similarity=0.314  Sum_probs=77.9

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD  291 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D  291 (364)
                      +....|+|+|++|++|++.|..|.+||||++.+..   .....+|.++.+++||.|++.|.|.+...  ....|.|+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            34556899999999999999999999999999842   22344566788999999999999987532  23569999999


Q ss_pred             cCCCCCCceeEEEEeecc
Q psy4890         292 HDSVSKDDYIGMTEMDLE  309 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLe  309 (364)
                      +|.+++|++||++.|++.
T Consensus        91 ~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          91 YDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             CCCCCCCceeEEEEECCC
Confidence            999999999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.54  E-value=2.6e-14  Score=122.94  Aligned_cols=94  Identities=23%  Similarity=0.380  Sum_probs=78.8

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--S-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~  292 (364)
                      ....|+|+|++|+||++.+.+|.+||||++.+.  + .....+|.++.+++||.||++|.|.+...  .+..|.|+|||+
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~   92 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence            345578999999999999999999999999983  2 22344667889999999999999987532  356899999999


Q ss_pred             CCCCCCceeEEEEeecccc
Q psy4890         293 DSVSKDDYIGMTEMDLESR  311 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr  311 (364)
                      |.+++|++||++.|++...
T Consensus        93 ~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          93 DRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCcEeEEEEECCccC
Confidence            9999999999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.54  E-value=2.8e-14  Score=127.51  Aligned_cols=95  Identities=21%  Similarity=0.377  Sum_probs=80.0

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEe
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKD  291 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D  291 (364)
                      ....|+|+|++|+||++.+..|.+||||++.+..   .....+|+++.+++||+||+.|.|.+..+   .+..|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            4567899999999999999999999999998742   22344667889999999999999985322   35689999999


Q ss_pred             cCCCCCCceeEEEEeeccccc
Q psy4890         292 HDSVSKDDYIGMTEMDLESRF  312 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLenr~  312 (364)
                      +|.+++|++||++.+++....
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~  125 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGK  125 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccc
Confidence            999999999999999998754

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.54  E-value=3.3e-14  Score=119.83  Aligned_cols=88  Identities=28%  Similarity=0.391  Sum_probs=77.2

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEECCEE-----eeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC----CC
Q psy4890         226 IVRAYGLHPKDKDGKCDPYIVLKTGSVE-----INDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS----VS  296 (364)
Q Consensus       226 Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~-----~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~----is  296 (364)
                      .++|++|++.+..|.+||||++.+.+..     ...+|.++.+++||+|++.|.|.+..+....|.|+|||+|.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            5899999999999999999999986542     34567889999999999999998766677889999999997    88


Q ss_pred             CCceeEEEEeecccccc
Q psy4890         297 KDDYIGMTEMDLESRFY  313 (364)
Q Consensus       297 kDD~IGet~IdLenr~~  313 (364)
                      +|++||++.+++.++..
T Consensus        86 ~~d~iG~~~i~l~~l~~  102 (120)
T cd04048          86 DHDFLGEAECTLGEIVS  102 (120)
T ss_pred             CCcEEEEEEEEHHHHhc
Confidence            99999999999998863

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.54  E-value=4.9e-14  Score=122.68  Aligned_cols=95  Identities=16%  Similarity=0.276  Sum_probs=80.3

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EE-eeeeeeeecCCCCCccceEEEEEeec--CCCCeEEEEE
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VE-INDRENYVTNQINPYFGRHFEIQGSF--PTDAKLTVEI  289 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~-~~tkt~~i~~tlnP~wne~Fef~v~~--p~~~~L~V~V  289 (364)
                      .+....|.|+|++|+||++.+..|.+||||++.+.+   +. .+.+|+++.+++||+|||+|.|.++.  ..+..|.|+|
T Consensus        11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V   90 (138)
T cd08408          11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV   90 (138)
T ss_pred             cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence            445566889999999999999999999999999842   11 24467888999999999999999864  3467999999


Q ss_pred             EecCCCCCCceeEEEEeeccc
Q psy4890         290 KDHDSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       290 ~D~D~iskDD~IGet~IdLen  310 (364)
                      ||+|.++++++||++.+++..
T Consensus        91 ~~~~~~~~~~~iG~v~l~~~~  111 (138)
T cd08408          91 YNKRKMKRKEMIGWFSLGLNS  111 (138)
T ss_pred             EECCCCCCCcEEEEEEECCcC
Confidence            999999999999999998764

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.53  E-value=1.3e-13  Score=117.62  Aligned_cols=89  Identities=19%  Similarity=0.355  Sum_probs=75.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      .|+|+|++|+ |.+.+..+.+||||++.++++ ...+|.++.+++||.||+.|.|.+.  ....|.|+|||++..++|++
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~-~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~~   78 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ-PPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADVL   78 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc-ccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCcE
Confidence            4789999998 666666889999999999876 2334566889999999999999974  46789999999999999999


Q ss_pred             eEEEEeecccccc
Q psy4890         301 IGMTEMDLESRFY  313 (364)
Q Consensus       301 IGet~IdLenr~~  313 (364)
                      ||++.++|.++..
T Consensus        79 iG~~~i~l~~l~~   91 (125)
T cd04021          79 LGEASLDLSDILK   91 (125)
T ss_pred             EEEEEEEHHHhHh
Confidence            9999999988764

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.53  E-value=9.6e-14  Score=115.81  Aligned_cols=102  Identities=18%  Similarity=0.213  Sum_probs=80.6

Q ss_pred             CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeeccccccccC
Q psy4890         237 KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRH  316 (364)
Q Consensus       237 ~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~  316 (364)
                      .+|.+||||++.++++.. .+|.++.++.||+||+.|.|.+..+....|.|.|||++.+ +|++||++.++|.++.....
T Consensus         9 ~~G~~dPYv~v~v~~~~~-~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~   86 (111)
T cd04052           9 KTGLLSPYAELYLNGKLV-YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS   86 (111)
T ss_pred             cCCCCCceEEEEECCEEE-EEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh
Confidence            478999999999987532 2345578899999999999999766778899999999999 99999999999998754211


Q ss_pred             CCccccccccccCCCCCceEEEEEEEEee
Q psy4890         317 RGSCARWTSDLEVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       317 ~a~~gL~p~~y~~~G~~~GEIllSL~fq~  345 (364)
                      .    . ..++.+.+..+|+|+++++|.+
T Consensus        87 ~----~-~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          87 V----G-QQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             c----c-ceeEECCCCCCCEEEEEEEEec
Confidence            1    1 2344445567899999999853

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.53  E-value=1.4e-13  Score=114.54  Aligned_cols=114  Identities=25%  Similarity=0.318  Sum_probs=83.9

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCCCCc
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~iskDD  299 (364)
                      |+|.|++|+||+..   |.+||||++.++++.. .+|+.+.+ .||.||+.|.|.+...  ....|.|.+||.+..++|.
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~-~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV-ARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEe-EecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            57899999999986   8899999999987542 23455677 9999999999998643  2356888889988777777


Q ss_pred             eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      .+|.+.|+.... ......|+.|+|...  .+...|+|++.+.|
T Consensus        77 ~~g~v~l~~~~~-~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~  117 (117)
T cd08383          77 VIGKVALSKLDL-GQGKDEWFPLTPVDP--DSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEEecCcCC-CCcceeEEECccCCC--CCCcCceEEEEEEC
Confidence            888776655433 113345666644322  34578999999986

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.52  E-value=8.1e-14  Score=118.93  Aligned_cols=94  Identities=23%  Similarity=0.435  Sum_probs=80.4

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D~D~i  295 (364)
                      ..|+|+|++|++|+..+..|.+||||++.+.+   .....+|.++.++.||.||++|.|.+..+ ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            56789999999999999899999999999853   22344567789999999999999998644 357899999999999


Q ss_pred             CCCceeEEEEeecccccc
Q psy4890         296 SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       296 skDD~IGet~IdLenr~~  313 (364)
                      ++|++||++.++|.++.-
T Consensus        93 ~~~~~iG~~~~~l~~l~~  110 (131)
T cd04026          93 TRNDFMGSLSFGVSELIK  110 (131)
T ss_pred             CCcceeEEEEEeHHHhCc
Confidence            999999999999988753

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.52  E-value=4.5e-14  Score=121.93  Aligned_cols=92  Identities=18%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CEE-eeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--SVE-INDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD  291 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~~~-~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D  291 (364)
                      |....|+|.|++|++|++.|.+|.+||||++.+.  .+. ...+|.++++++||+||+.|.|.+...  .+..|.|+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            3445689999999999999999999999999973  221 234567789999999999999998532  24579999999


Q ss_pred             cCCCCCCceeEEEEeec
Q psy4890         292 HDSVSKDDYIGMTEMDL  308 (364)
Q Consensus       292 ~D~iskDD~IGet~IdL  308 (364)
                      +|..++|++||++.|..
T Consensus        91 ~d~~~~~~~iG~~~l~~  107 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQ  107 (135)
T ss_pred             CCCCCCCcEEEEEEEcC
Confidence            99999999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.50  E-value=2.6e-13  Score=115.52  Aligned_cols=85  Identities=18%  Similarity=0.325  Sum_probs=71.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEec------
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDH------  292 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~------  292 (364)
                      |.|.|.+|+||+     |.+||||++.+.+.   ....+|+++.+|+||+|||.|+|.+.  ....|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence            468999999995     56899999988531   33456678999999999999999985  577999999998      


Q ss_pred             -CCCCCCceeEEEEeecccccc
Q psy4890         293 -DSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       293 -D~iskDD~IGet~IdLenr~~  313 (364)
                       |..++|++||.+.|.|+...+
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~~~~   95 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDPQSL   95 (118)
T ss_pred             ccccCcccEEEEEEEEECHHHh
Confidence             577899999999999986554

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.50  E-value=3.6e-13  Score=113.54  Aligned_cols=117  Identities=23%  Similarity=0.321  Sum_probs=89.2

Q ss_pred             EEEEEEEEEecCCCCCC--CCCCCCcEEEEEECC----EEeeeeeeeecCCC-CCccceEEEEEeecCCCCeEEEEEEec
Q psy4890         220 VTIRVYIVRAYGLHPKD--KDGKCDPYIVLKTGS----VEINDRENYVTNQI-NPYFGRHFEIQGSFPTDAKLTVEIKDH  292 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D--~~G~sDPYV~I~Lg~----~~~~tkt~~i~~tl-nP~wne~Fef~v~~p~~~~L~V~V~D~  292 (364)
                      ..|+|+|++|++|++.+  ..+.+||||++++..    .....+|.++.++. ||.||+.|.|.+..+....|.++|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            35789999999999988  578999999999842    12333445566665 999999999998877767899999999


Q ss_pred             CCCCCCceeEEEEeeccccccccCCCccccccccccCCC--CCceEEEEEEEE
Q psy4890         293 DSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSG--SSPGEVLPGITL  343 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G--~~~GEIllSL~f  343 (364)
                      +.. +|++||++.++|.++.- . ..+..|    ....|  ...|.|.+.+.+
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~-g-~~~~~l----~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQ-G-YRHVPL----LDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcC-c-eEEEEe----cCCCCCCCcceeEEEEEEE
Confidence            988 99999999999987632 1 122333    22233  567899988875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.50  E-value=1.3e-13  Score=120.00  Aligned_cols=95  Identities=13%  Similarity=0.194  Sum_probs=78.8

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCC-CCccceEEEEEeecCC-CCeEEEEEE
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQI-NPYFGRHFEIQGSFPT-DAKLTVEIK  290 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tl-nP~wne~Fef~v~~p~-~~~L~V~V~  290 (364)
                      .|....|.|.|++|+||++.+..+..||||++++.   +...+.||.++.+|+ ||+|||.|.|.+..+. +..|.|+||
T Consensus        10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~   89 (135)
T cd08692          10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY   89 (135)
T ss_pred             cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence            56777899999999999998667778999999873   233455677888986 6999999999997543 457889999


Q ss_pred             ecCCCCCCceeEEEEeeccc
Q psy4890         291 DHDSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLen  310 (364)
                      |+|..+++|+||++.+....
T Consensus        90 d~~~~~~n~~IG~v~lG~~~  109 (135)
T cd08692          90 SRSSVRRKHFLGQVWISSDS  109 (135)
T ss_pred             eCCCCcCCceEEEEEECCcc
Confidence            99999999999999999864

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.49  E-value=4.8e-13  Score=119.05  Aligned_cols=119  Identities=15%  Similarity=0.233  Sum_probs=87.1

Q ss_pred             EEEEEEecC--CCCCCCCCCCCcEEEEEE--C-CEEeeeeeeeecCCCCCccceEEEEEeecCC--------CCeEEEEE
Q psy4890         223 RVYIVRAYG--LHPKDKDGKCDPYIVLKT--G-SVEINDRENYVTNQINPYFGRHFEIQGSFPT--------DAKLTVEI  289 (364)
Q Consensus       223 rV~Vv~A~d--L~p~D~~G~sDPYV~I~L--g-~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--------~~~L~V~V  289 (364)
                      .++|.+|.+  |++.+.++.+||||++.+  . ....+.||+++.+|+||+|||.|.|.+....        ...|.|+|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            355666666  788888899999999987  2 3334556678999999999999999985432        45799999


Q ss_pred             EecCCC-CCCceeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEEee
Q psy4890         290 KDHDSV-SKDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       290 ~D~D~i-skDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~  345 (364)
                      ||++.+ ++|++||++.++|+..... ....++.|    ..-..+..|+|.+.+....
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L----~~~~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDL----MDGRKATGGKLEVKVRLRE  138 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEh----hhCCCCcCCEEEEEEEecC
Confidence            999986 5799999999999876432 11122322    1123366799999998844

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>KOG0696|consensus

Probab=99.49  E-value=2e-14  Score=143.61  Aligned_cols=105  Identities=24%  Similarity=0.368  Sum_probs=87.1

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeec-CCCCeEEEEEEecC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSF-PTDAKLTVEIKDHD  293 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~-p~~~~L~V~V~D~D  293 (364)
                      ..-.|.|.|..|+||.|+|.||.+||||++++..   ...+.+|+.++.++||+|||+|.|.+.. ..++.|.|+|||||
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            4456789999999999999999999999999853   2334456679999999999999999862 23778999999999


Q ss_pred             CCCCCceeEEEEeeccccccccCCCcccc
Q psy4890         294 SVSKDDYIGMTEMDLESRFYSRHRGSCAR  322 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr~~s~~~a~~gL  322 (364)
                      +-+++||+|...+.++++.-....+|..|
T Consensus       258 rTsRNDFMGslSFgisEl~K~p~~GWyKl  286 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKAPVDGWYKL  286 (683)
T ss_pred             ccccccccceecccHHHHhhcchhhHHHH
Confidence            99999999999999988765545556655

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.48  E-value=2.3e-13  Score=112.59  Aligned_cols=87  Identities=29%  Similarity=0.381  Sum_probs=73.4

Q ss_pred             EEEEecCCCCCCCCCCCCcEEEEEECCE----EeeeeeeeecCCCCCccceEEEEEeec----CCCCeEEEEEEecCCCC
Q psy4890         225 YIVRAYGLHPKDKDGKCDPYIVLKTGSV----EINDRENYVTNQINPYFGRHFEIQGSF----PTDAKLTVEIKDHDSVS  296 (364)
Q Consensus       225 ~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~----~~~tkt~~i~~tlnP~wne~Fef~v~~----p~~~~L~V~V~D~D~is  296 (364)
                      -.++|++|++.|..|.+|||+++.+.+.    ....+|.++.+++||+|| .|.|.+..    .....|.|+|||+|..+
T Consensus         5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~   83 (110)
T cd04047           5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG   83 (110)
T ss_pred             EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence            3679999999999999999999987532    345677889999999999 68877532    12679999999999999


Q ss_pred             CCceeEEEEeeccccc
Q psy4890         297 KDDYIGMTEMDLESRF  312 (364)
Q Consensus       297 kDD~IGet~IdLenr~  312 (364)
                      +|++||++.++|.++.
T Consensus        84 ~d~~iG~~~~~l~~l~   99 (110)
T cd04047          84 KHDLIGEFETTLDELL   99 (110)
T ss_pred             CCcEEEEEEEEHHHHh
Confidence            9999999999999876

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.47  E-value=7.2e-13  Score=115.55  Aligned_cols=115  Identities=19%  Similarity=0.273  Sum_probs=84.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-E----------EeeeeeeeecCCCCCcc-ceEEEEEeecCCCCeEEEE
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-V----------EINDRENYVTNQINPYF-GRHFEIQGSFPTDAKLTVE  288 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~----------~~~tkt~~i~~tlnP~w-ne~Fef~v~~p~~~~L~V~  288 (364)
                      ...|.+++|+||+ ++..|++|||+++.+.. .          ....+|.++.+++||+| |+.|.|.+.  ....|.|+
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence            4578899999998 77889999999999853 1          12456788999999999 999999984  45689999


Q ss_pred             EEecCCCCC---CceeEEEEeeccccccccCCCccccccccccC-----CCCCceEEEEEE
Q psy4890         289 IKDHDSVSK---DDYIGMTEMDLESRFYSRHRGSCARWTSDLEV-----SGSSPGEVLPGI  341 (364)
Q Consensus       289 V~D~D~isk---DD~IGet~IdLenr~~s~~~a~~gL~p~~y~~-----~G~~~GEIllSL  341 (364)
                      |||++..++   |++||++.|+|.++.-......   ..++|.+     .+.-+|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~---~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGD---QELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCc---eEEEEECCcCCCCCcEEEEEEEEe
Confidence            999875443   7999999999998754311111   1222222     234578887764

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.46  E-value=2.5e-13  Score=115.35  Aligned_cols=92  Identities=23%  Similarity=0.411  Sum_probs=78.9

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEecC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDHD  293 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~D  293 (364)
                      ...|.|+|++|+||++.+..+.+||||++.+.+.   ....+|.++.++.||.||++|.|.+..+.  ...|.|+|||.+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~   92 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence            3468899999999999998999999999998542   23345677889999999999999986543  678999999999


Q ss_pred             CCCCCceeEEEEeeccc
Q psy4890         294 SVSKDDYIGMTEMDLES  310 (364)
Q Consensus       294 ~iskDD~IGet~IdLen  310 (364)
                      ..+++++||++.|+|.+
T Consensus        93 ~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          93 SVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCCceeEEEEECCCC
Confidence            98899999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.46  E-value=3.3e-13  Score=113.94  Aligned_cols=97  Identities=26%  Similarity=0.384  Sum_probs=79.4

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEE
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEI  289 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V  289 (364)
                      .+....|+|.|++|++|++.+..+.+||||++.+.+   .....+|+++++++||.||+.|.|....+   ....|.|+|
T Consensus        11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v   90 (123)
T cd04035          11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV   90 (123)
T ss_pred             eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence            344567899999999999999889999999998732   22345667789999999999999963322   256899999


Q ss_pred             EecCCCCCCceeEEEEeecccccc
Q psy4890         290 KDHDSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       290 ~D~D~iskDD~IGet~IdLenr~~  313 (364)
                      ||++.. +|++||++.++|.++..
T Consensus        91 ~d~~~~-~~~~iG~~~i~l~~l~~  113 (123)
T cd04035          91 LDEDRF-GNDFLGETRIPLKKLKP  113 (123)
T ss_pred             EEcCCc-CCeeEEEEEEEcccCCC
Confidence            999988 89999999999987753

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.46  E-value=2.9e-13  Score=117.42  Aligned_cols=92  Identities=17%  Similarity=0.250  Sum_probs=76.3

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--EE-eeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--VE-INDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD  291 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~~-~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D  291 (364)
                      |....|.|.|++|+||++.+ .+.+||||++.+..  +. .+.+|+++.+++||+|||.|.|.++..  ....|.|+|||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~   90 (137)
T cd08409          12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ   90 (137)
T ss_pred             CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence            34566889999999999999 88899999999753  22 234667788999999999999998532  34789999999


Q ss_pred             cCCCCCCceeEEEEeecc
Q psy4890         292 HDSVSKDDYIGMTEMDLE  309 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLe  309 (364)
                      ++..++|++||++.|...
T Consensus        91 ~~~~~~~~~lG~v~ig~~  108 (137)
T cd08409          91 SGGVRKSKLLGRVVLGPF  108 (137)
T ss_pred             CCCCCCcceEEEEEECCc
Confidence            999999999999999854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.41  E-value=1.2e-12  Score=101.18  Aligned_cols=84  Identities=31%  Similarity=0.452  Sum_probs=73.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      |+|+|++|+||+..+..+..|||+++.+++. ....+|..++++.+|.|++.|.|.+..+....|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            6799999999999998999999999999752 223345678999999999999999887777779999999999999999


Q ss_pred             eEEEE
Q psy4890         301 IGMTE  305 (364)
Q Consensus       301 IGet~  305 (364)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.38  E-value=3.1e-12  Score=111.13  Aligned_cols=101  Identities=22%  Similarity=0.335  Sum_probs=78.9

Q ss_pred             EEEEEEEecCCCCCC--CCCC--CCcEEEEEECCE-EeeeeeeeecCCCC--CccceEEEEEeecC--------------
Q psy4890         222 IRVYIVRAYGLHPKD--KDGK--CDPYIVLKTGSV-EINDRENYVTNQIN--PYFGRHFEIQGSFP--------------  280 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D--~~G~--sDPYV~I~Lg~~-~~~tkt~~i~~tln--P~wne~Fef~v~~p--------------  280 (364)
                      |||.|.+|+|++..+  ..|.  +||||++.+.+. ..+.+|.++.+++|  |.||+.|.|.+..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            799999999966543  3674  999999998653 44445566778888  99999999987652              


Q ss_pred             ---------CCCeEEEEEEecCCCCCCceeEEEEeeccccccc-cCCCcccc
Q psy4890         281 ---------TDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYS-RHRGSCAR  322 (364)
Q Consensus       281 ---------~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s-~~~a~~gL  322 (364)
                               ....|.|+|||.|.+++||+||++.++|.....+ +....|||
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~~~~~c~l  133 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAKTSKKCGL  133 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccccccccCCC
Confidence                     2578999999999999999999999999977654 23344553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.37  E-value=2e-11  Score=107.75  Aligned_cols=123  Identities=18%  Similarity=0.199  Sum_probs=90.1

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC-CC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS-VS  296 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~-is  296 (364)
                      ..-.|+|.|++|++|++++     +|||.|.+++... .||.++.++.||.|+|.|+|.+. +.-..|.|.||+.+. .+
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v-aRT~v~~~~~nP~W~E~F~f~~~-~~~~~l~v~v~k~~~~~~   81 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY-ARTTSKLKTDTLFWGEHFEFSNL-PPVSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE-EEEEEEcCCCCCcceeeEEecCC-CcccEEEEEEEEccCccc
Confidence            3456789999999999876     7999999998754 24567889999999999999875 345779999986543 22


Q ss_pred             ---CCceeEEEEeeccccccc-cCCCccccccccccC-----C-CCCceEEEEEEEEeecc
Q psy4890         297 ---KDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEV-----S-GSSPGEVLPGITLQSGE  347 (364)
Q Consensus       297 ---kDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~-----~-G~~~GEIllSL~fq~g~  347 (364)
                         +|++||.+.|+++++... ....|+.|.+..-..     + -...+.|++++.|+...
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence               689999999999987632 223456553221110     0 13457999999998764

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN03008 Phospholipase D delta

Probab=99.34  E-value=7.4e-12  Score=134.58  Aligned_cols=105  Identities=16%  Similarity=0.241  Sum_probs=78.4

Q ss_pred             CCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeecccccccc-C
Q psy4890         238 DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSR-H  316 (364)
Q Consensus       238 ~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~-~  316 (364)
                      .+.+||||+|.+++++.. ||+++.+++||+|||.|.|.|..+ ...|.++|||+|.++ +|+||++.|+|+++.... .
T Consensus        74 ~~tSDPYV~I~Lg~~rv~-RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v  150 (868)
T PLN03008         74 VITSDPYVTVVVPQATLA-RTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI  150 (868)
T ss_pred             cCCCCceEEEEECCccee-eEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce
Confidence            467899999999875432 556789999999999999999865 468999999999996 689999999999875532 2


Q ss_pred             CCccccccccccCCCCCceEEEEEEEEeec
Q psy4890         317 RGSCARWTSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       317 ~a~~gL~p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      ..|..| -......-...|+|+++|+|..-
T Consensus       151 d~Wl~L-l~~~~kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        151 SGWFPV-LGASGKPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             EEEEEc-cccCCCCCCCCcEEEEEEEEEEc
Confidence            234434 11111112346899999999443

>PLN02223 phosphoinositide phospholipase C

Probab=99.22  E-value=6.7e-11  Score=122.59  Aligned_cols=158  Identities=17%  Similarity=0.212  Sum_probs=109.3

Q ss_pred             eeeecCCCCcC--CcccCC--------------CccccccccccccccccCCCCCccccceeeEE-EeeEEEeecCCCCC
Q psy4890         134 CNIVPPKNELE--LVPEFE--------------HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSF-KGNVMFYPADRDHL  196 (364)
Q Consensus       134 ~~lkvy~~eLE--~~~~F~--------------~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~f-Kg~f~iyp~p~~~~  196 (364)
                      .-++||+.-+-  ....|+              |||.+...+.|.+|++..++.       .|.+ |..|..-+.++  .
T Consensus       327 ~l~RiYPkG~R~~dSSNYnP~~~W~~GcQmVALN~QT~d~~M~LN~G~F~~NG~-------CGYVLKP~~Lr~~~~~--~  397 (537)
T PLN02223        327 KFLRTRPKKKNLLINAPYKPQRAWMHGAQLIALSRKDDKEKLWLMQGMFRANGG-------CGYVKKPDFLLNAGPS--G  397 (537)
T ss_pred             ceEEECCCCCccccCCCCCChhhcccceeEeeeccCCCChhHHhhcchhccCCC-------CCceECChhhccCCcc--c
Confidence            35788887763  344554              677778888899999988762       3433 22221111010  0


Q ss_pred             CCCCCCccccccccccCC-CcceeEEEEEEEEEecCCCCC-----CCCCCCCcEEEEEECCE---EeeeeeeeecCCCCC
Q psy4890         197 VTFSGKPLSNGALQESID-NEKVNVTIRVYIVRAYGLHPK-----DKDGKCDPYIVLKTGSV---EINDRENYVTNQINP  267 (364)
Q Consensus       197 ~~~~~~~~~~~l~~~yp~-~~p~~~~LrV~Vv~A~dL~p~-----D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP  267 (364)
                      ...             |. +.+....|.|.|+.|+++++.     +.....||||+|.+.+.   ....+|.+..++.||
T Consensus       398 ~Fd-------------P~~~~~~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nP  464 (537)
T PLN02223        398 VFY-------------PTENPVVVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKP  464 (537)
T ss_pred             ccC-------------CCCCcccceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCc
Confidence            111             11 122345688999999998521     22345799999998531   112234567889999


Q ss_pred             ccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeecccccc
Q psy4890         268 YFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       268 ~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~  313 (364)
                      +||+.|+|.+..|+-..|.|.|+|+|..++|++||++.+|+..+..
T Consensus       465 vWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~  510 (537)
T PLN02223        465 TWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIE  510 (537)
T ss_pred             eecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcC
Confidence            9999999999999999999999999998899999999999988753

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.22  E-value=2.9e-11  Score=140.10  Aligned_cols=115  Identities=16%  Similarity=0.231  Sum_probs=90.8

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCC-CCeEEEEEEecCCCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPT-DAKLTVEIKDHDSVS  296 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~-~~~L~V~V~D~D~is  296 (364)
                      ...|+|+|++|+||.  +..|.+||||++.+|++ +.  ||++++++.||+||+.|.|.+..|. +..|+|+|||+|.++
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~--kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPR--QTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcc--cccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence            467899999999998  45799999999999965 44  4467999999999999999988765 456999999999995


Q ss_pred             CCceeEEEEeeccccccc-cCCCccccccccccCCCCCceE---EEEEEEE
Q psy4890         297 KDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGE---VLPGITL  343 (364)
Q Consensus       297 kDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GE---IllSL~f  343 (364)
                      + |.||.+.|+|.+.... +...++.|.     -+|...|.   |.+.+..
T Consensus      2055 k-d~~G~~~i~l~~vv~~~~~~~~~~L~-----~~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200       2055 K-SSLGKVTIQIDRVVMEGTYSGEYSLN-----PESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred             C-CCCceEEEEHHHHhcCceeeeeeecC-----cccccCCCcceEEEEEEe
Confidence            4 5999999999988744 445566552     13445677   7776643

>KOG1011|consensus

Probab=99.17  E-value=6.3e-11  Score=122.90  Aligned_cols=119  Identities=24%  Similarity=0.435  Sum_probs=89.6

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC--
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV--  295 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i--  295 (364)
                      ....++++|+.|+||..+|..|++||||.+++|+.+.++++  +...+||+||+.|.|+|. .....++|.|||.|.-  
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrt--i~~~lnpvw~ekfhfech-nstdrikvrvwded~dlk  369 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRT--IHQELNPVWNEKFHFECH-NSTDRIKVRVWDEDNDLK  369 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHh--hhhccchhhhhheeeeec-CCCceeEEEEecCcccHH
Confidence            34567899999999999999999999999999988777754  889999999999999998 4556789999998752  


Q ss_pred             ---------CCCceeEEEEeeccccccc-cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         296 ---------SKDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       296 ---------skDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                               ..|||+|++.|.+..  +| .-.-|..| ...-+.+ .-.|-|++.|..
T Consensus       370 sklrqkl~resddflgqtvievrt--lsgemdvwynl-ekrtdks-avsgairlhisv  423 (1283)
T KOG1011|consen  370 SKLRQKLTRESDDFLGQTVIEVRT--LSGEMDVWYNL-EKRTDKS-AVSGAIRLHISV  423 (1283)
T ss_pred             HHHHHHhhhcccccccceeEEEEe--cccchhhhcch-hhccchh-hccceEEEEEEE
Confidence                     469999999997643  33 22234444 2111111 245777776666

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.16  E-value=4.4e-10  Score=88.08  Aligned_cols=92  Identities=32%  Similarity=0.546  Sum_probs=76.9

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      ++|.|++|++|......+..+|||++.+... ....+|..+.++.||.|++.|.|.+..+....|.|+|||.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            5789999999998876678999999999764 122344567888899999999999976668899999999998888999


Q ss_pred             eEEEEeecccccc
Q psy4890         301 IGMTEMDLESRFY  313 (364)
Q Consensus       301 IGet~IdLenr~~  313 (364)
                      +|.+.++|.+...
T Consensus        82 ~G~~~~~l~~~~~   94 (101)
T smart00239       82 IGQVTIPLSDLLL   94 (101)
T ss_pred             eEEEEEEHHHccc
Confidence            9999999877643

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02952 phosphoinositide phospholipase C

Probab=99.10  E-value=1.1e-09  Score=115.56  Aligned_cols=143  Identities=17%  Similarity=0.218  Sum_probs=97.0

Q ss_pred             CccccccccccccccccCCCCCccccceeeEE-EeeEEEeecCCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSF-KGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA  229 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~f-Kg~f~iyp~p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A  229 (364)
                      |||.+...+.|.+|++..++.       .|.+ |..+..-..+.+ . ...|   ..        ..|..-.|+|.|+.|
T Consensus       420 N~Qt~d~~m~lN~g~F~~NG~-------cGYVlKP~~lr~~~~~~-~-~fdp---~~--------~~~~~~~L~V~VisG  479 (599)
T PLN02952        420 NMQGYGKSLWLMHGMFRANGG-------CGYLKKPDFLMKKGFHD-E-VFDP---KK--------KLPVKKTLKVKVYLG  479 (599)
T ss_pred             cccCCChHHHhhhchhccCCC-------CCceECCHHHcccCCcc-c-ccCC---CC--------CCCccceEEEEEEEC
Confidence            677778888899999877751       2433 222211000000 0 1101   01        122345688999999


Q ss_pred             cCCCCC------CCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         230 YGLHPK------DKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       230 ~dL~p~------D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      ++++..      +.....||||+|.+-+   ...+.+|+++.++.||+||+.|.|.+..|.-..|.|.|||+|..+.||+
T Consensus       480 q~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddf  559 (599)
T PLN02952        480 DGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDF  559 (599)
T ss_pred             cccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCe
Confidence            987532      1123359999998743   2233355678888999999999999998988899999999999999999


Q ss_pred             eEEEEeecccccc
Q psy4890         301 IGMTEMDLESRFY  313 (364)
Q Consensus       301 IGet~IdLenr~~  313 (364)
                      ||++.++|..+..
T Consensus       560 iGq~~lPv~~Lr~  572 (599)
T PLN02952        560 GGQTCLPVSELRP  572 (599)
T ss_pred             EEEEEcchhHhcC
Confidence            9999999988754

>cd00030 C2 C2 domain

Probab=99.07  E-value=1.4e-09  Score=84.43  Aligned_cols=89  Identities=36%  Similarity=0.606  Sum_probs=76.3

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      +.|+|++|++|......+..+||+.+.+.+ ...+  |..+.++.||.|++.|.|.+.......|.|+|||.+..+.+++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~--T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   78 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFK--TKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF   78 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEe--cceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence            368899999998877778899999999987 4443  4567888999999999999975567889999999998888999


Q ss_pred             eEEEEeeccccc
Q psy4890         301 IGMTEMDLESRF  312 (364)
Q Consensus       301 IGet~IdLenr~  312 (364)
                      ||.+.+++.++.
T Consensus        79 ig~~~~~l~~l~   90 (102)
T cd00030          79 LGEVEIPLSELL   90 (102)
T ss_pred             eEEEEEeHHHhh
Confidence            999999998765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG2059|consensus

Probab=99.05  E-value=6.2e-10  Score=116.73  Aligned_cols=122  Identities=22%  Similarity=0.301  Sum_probs=98.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      -|+|.|.+|+||++.+..|..|||+.|.+....+. ||.++.+++.|-|+|.|.|++. +.-..|.+-|||.| +++|+.
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~-RT~tv~ksL~PF~gEe~~~~iP-~~F~~l~fYv~D~d-~~~D~~   82 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVC-RTATVEKSLCPFFGEEFYFEIP-RTFRYLSFYVWDRD-LKRDDI   82 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhh-hhhhhhhhcCCccccceEEecC-cceeeEEEEEeccc-cccccc
Confidence            46789999999999999999999999998764432 4567899999999999999885 34567899999999 999999


Q ss_pred             eEEEEeeccccc-cccCCCccccccccccCCCCCceEEEEEEEEeecc
Q psy4890         301 IGMTEMDLESRF-YSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGE  347 (364)
Q Consensus       301 IGet~IdLenr~-~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g~  347 (364)
                      ||.+.|.=+++- ++....|..|+|  .+.+..-||+|++++.+-.+.
T Consensus        83 IGKvai~re~l~~~~~~d~W~~L~~--VD~dsEVQG~v~l~l~~~e~~  128 (800)
T KOG2059|consen   83 IGKVAIKREDLHMYPGKDTWFSLQP--VDPDSEVQGKVHLELALTEAI  128 (800)
T ss_pred             cceeeeeHHHHhhCCCCccceeccc--cCCChhhceeEEEEEEecccc
Confidence            999999877764 234456777743  344556799999999995554

>KOG1028|consensus

Probab=99.04  E-value=6.3e-10  Score=113.54  Aligned_cols=95  Identities=21%  Similarity=0.351  Sum_probs=80.7

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEE
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIK  290 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~  290 (364)
                      -|....|+|.|++|++|..++..+.+||||++.+-   +...+.+|.+.++++||+||++|.|.+...  .+..|.|+||
T Consensus       294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~  373 (421)
T KOG1028|consen  294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW  373 (421)
T ss_pred             ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence            56778899999999999999999999999999873   234455677889999999999999987532  3567999999


Q ss_pred             ecCCCCCCceeEEEEeeccc
Q psy4890         291 DHDSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLen  310 (364)
                      |+|.++++++||.+.+-...
T Consensus       374 d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  374 DHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             EcccccccceeeEEEecCCC
Confidence            99999999999988887653

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.02  E-value=1.5e-09  Score=114.39  Aligned_cols=143  Identities=17%  Similarity=0.206  Sum_probs=98.6

Q ss_pred             CccccccccccccccccCCCCCccccceeeEE-EeeEEEeecCCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSF-KGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA  229 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~f-Kg~f~iyp~p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A  229 (364)
                      |||.+...+.|.+|++..++.       .|.+ |..|..-+.+  ....+.|   +.      +  .+..-+|.|.|+.|
T Consensus       419 N~Qt~d~~M~LN~G~F~~NG~-------CGYVLKP~~Lr~~~~--~~~~fdP---~~------~--~~~~~~L~V~VisG  478 (598)
T PLN02230        419 NMQGYGRALWLMEGMFRANGG-------CGYVKKPDFLMDAGP--NGQDFYP---KD------N--SCPKKTLKVKVCMG  478 (598)
T ss_pred             cccCCChHHHhhcchhccCCC-------CCceECCHHhcCCCc--cccccCC---Cc------C--CCcCcEEEEEEEEc
Confidence            688889999999999988762       3433 2222111100  0000001   00      1  12334578889999


Q ss_pred             cCCCCC------CCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         230 YGLHPK------DKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       230 ~dL~p~------D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      ++++..      +.....||||+|.+-+   .....+|++..++.||+||+.|+|.+..|+-..|.|.|+|+|..++||+
T Consensus       479 q~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddf  558 (598)
T PLN02230        479 DGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDF  558 (598)
T ss_pred             cCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCE
Confidence            987521      2223469999998742   2233355677889999999999999999999999999999999889999


Q ss_pred             eEEEEeecccccc
Q psy4890         301 IGMTEMDLESRFY  313 (364)
Q Consensus       301 IGet~IdLenr~~  313 (364)
                      ||++.+|+..+..
T Consensus       559 iGQ~~lPv~~Lr~  571 (598)
T PLN02230        559 GGQTCLPVSEIRQ  571 (598)
T ss_pred             EEEEEcchHHhhC
Confidence            9999999987653

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.02  E-value=2.1e-09  Score=112.96  Aligned_cols=143  Identities=18%  Similarity=0.156  Sum_probs=98.5

Q ss_pred             CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC-CCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA  229 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p-~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A  229 (364)
                      |||.+...+.|.+|++..++.       .|.+     +.|.- .+...   ....|.-     ....|....|+|.|+.|
T Consensus       402 N~QT~d~~M~LN~G~F~~NG~-------cGYV-----LKP~~lr~~~~---~~~~fdp-----~~~~~~~~~L~V~Visg  461 (581)
T PLN02222        402 NMQGYGRSLWLMQGMFRANGG-------CGYI-----KKPDLLLKSGS---DSDIFDP-----KATLPVKTTLRVTIYMG  461 (581)
T ss_pred             cccCCChhhhhhcchhccCCC-------CceE-----ECCHHhccCCc---cccccCC-----CCCCCccceEEEEEEEc
Confidence            688888899999999988761       3332     23310 00000   0000100     01123345688999999


Q ss_pred             cCCC--C-C---CCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCce
Q psy4890         230 YGLH--P-K---DKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDY  300 (364)
Q Consensus       230 ~dL~--p-~---D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~  300 (364)
                      ++++  . .   +.....||||+|.+.+   ...+.+|+++.++.||+||+.|+|.+..|+-..|.|.|+|+|..+.|++
T Consensus       462 q~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddf  541 (581)
T PLN02222        462 EGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDF  541 (581)
T ss_pred             ccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcE
Confidence            8753  1 1   1224579999999842   2333456678888999999999999999999999999999999889999


Q ss_pred             eEEEEeecccccc
Q psy4890         301 IGMTEMDLESRFY  313 (364)
Q Consensus       301 IGet~IdLenr~~  313 (364)
                      ||++.+|+..+..
T Consensus       542 igq~~lPv~~Lr~  554 (581)
T PLN02222        542 GGQTCLPVWELSQ  554 (581)
T ss_pred             EEEEEcchhhhhC
Confidence            9999999987653

>PLN02228 Phosphoinositide phospholipase C

Probab=98.99  E-value=5.6e-09  Score=109.55  Aligned_cols=168  Identities=17%  Similarity=0.179  Sum_probs=111.7

Q ss_pred             CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC-CCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA  229 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p-~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A  229 (364)
                      |||.+...+.|..|++..++.       .|.+     +.|.- .+......|   +..        .|....|+|.|++|
T Consensus       384 N~QT~d~~M~lN~g~F~~NG~-------cGYV-----LKP~~Lr~~~~~f~p---~~~--------~p~~~~L~I~ViSG  440 (567)
T PLN02228        384 NMQGHGKQLWIMQGMFRANGG-------CGYV-----KKPRILLDEHTLFDP---CKR--------LPIKTTLKVKIYTG  440 (567)
T ss_pred             cccCCChHHHhhcCchhhCCC-------CCce-----eCchhhcccccccCC---ccC--------CCcCceEEEEEEEC
Confidence            688888888899999877651       2332     22310 011101101   111        22345688999999


Q ss_pred             cCCC---CCC---CCCCCCcEEEEEECC---EEeeeeeeeecCCCCCcc-ceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         230 YGLH---PKD---KDGKCDPYIVLKTGS---VEINDRENYVTNQINPYF-GRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       230 ~dL~---p~D---~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~w-ne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      ++|+   +.+   .....||||+|.+.+   .....+|+++.++.||+| |+.|+|.+..|+-..|.|.|+|+|..+.|+
T Consensus       441 q~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~  520 (567)
T PLN02228        441 EGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQND  520 (567)
T ss_pred             CccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCC
Confidence            9873   122   123479999998742   122234556778899999 999999999999999999999999888999


Q ss_pred             eeEEEEeeccccccccCCCccccccccccCCCC--CceEEEEEEEEeecc
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGS--SPGEVLPGITLQSGE  347 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~--~~GEIllSL~fq~g~  347 (364)
                      +||++.|++..+.. .+|. ..|    ++..|.  .-..|++.+.+++.+
T Consensus       521 figq~~lPv~~Lr~-GYR~-VpL----~~~~G~~l~~atLfv~~~~~~~~  564 (567)
T PLN02228        521 FAGQTCLPLPELKS-GVRA-VRL----HDRAGKAYKNTRLLVSFALDPPY  564 (567)
T ss_pred             EEEEEEcchhHhhC-CeeE-EEc----cCCCCCCCCCeEEEEEEEEcCcc
Confidence            99999999987643 2331 223    333442  346799999987664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.93  E-value=2.8e-09  Score=117.03  Aligned_cols=126  Identities=21%  Similarity=0.290  Sum_probs=96.3

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      .-+.|++..|.||+..|.+|.+||||++.+.+++ ..+++++++|+||+||+.|.+.+..-....|.|.|+|||.-.++|
T Consensus      1040 G~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~-vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd 1118 (1227)
T COG5038        1040 GYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKS-VYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKND 1118 (1227)
T ss_pred             CcEEEEEeccCCCcccccCCCCCceEEEEeccee-cccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCcc
Confidence            4578999999999999999999999999998765 334577999999999999999998777888999999999999999


Q ss_pred             eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEeeccc
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEI  348 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g~~  348 (364)
                      .||.+.|||+.+.... .....+ |..-...+...|.++....|.+-++
T Consensus      1119 ~lg~~~idL~~l~~~~-~~n~~i-~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038        1119 LLGTAEIDLSKLEPGG-TTNSNI-PLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred             ccccccccHhhcCcCC-ccceee-eccCcceEecccEeecceecchhhh
Confidence            9999999999875421 111112 1110112345666776666654443

>KOG0169|consensus

Probab=98.93  E-value=3.3e-09  Score=112.51  Aligned_cols=166  Identities=23%  Similarity=0.308  Sum_probs=111.3

Q ss_pred             CccccccccccccccccCCCCCccccceeeEEEeeEEEeec-CCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPA-DRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA  229 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~-p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A  229 (364)
                      |||.....+.|..|.+..+++       .|.++     .|. -.++...+ .|  -..+    |  ...+ +|+|.|++|
T Consensus       568 N~Qt~G~~l~L~~G~Fr~NGg-------CGYVl-----KP~~L~~~~~~F-~P--~~~~----~--~~~~-tL~IkI~sG  625 (746)
T KOG0169|consen  568 NFQTPGRMLDLNQGMFRANGG-------CGYVL-----KPDFLLDSGSTF-DP--KSNL----P--PVKK-TLKIKIISG  625 (746)
T ss_pred             ecCCCChhhhhhhhhhccCCC-------ccceE-----CcHHHcCCCCcc-CC--CCCC----C--CCCc-eeEEEEEec
Confidence            588888888999999988872       55543     231 11111111 11  1111    2  2233 788999999


Q ss_pred             cCCCCCCC----CCCCCcEEEEEECCE---Eeeeeee-eecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         230 YGLHPKDK----DGKCDPYIVLKTGSV---EINDREN-YVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       230 ~dL~p~D~----~G~sDPYV~I~Lg~~---~~~tkt~-~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      +++++.-.    ...+||||.|.+.+-   ....+|+ +..++.||.|++.|+|.++.|.-+.|++.|+|+|..++|||+
T Consensus       626 q~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~  705 (746)
T KOG0169|consen  626 QGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFI  705 (746)
T ss_pred             CcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCccccc
Confidence            97755322    245899999998542   2233444 567899999999999999999999999999999999999999


Q ss_pred             EEEEeeccccccccCCCccccccccccCCC--CCceEEEEEEEEe
Q psy4890         302 GMTEMDLESRFYSRHRGSCARWTSDLEVSG--SSPGEVLPGITLQ  344 (364)
Q Consensus       302 Get~IdLenr~~s~~~a~~gL~p~~y~~~G--~~~GEIllSL~fq  344 (364)
                      |++.+|++.+.. .+|+ ..|    ++..|  ...-.|.+.++++
T Consensus       706 GQ~tlP~~~L~~-GyRh-VpL----~~~~G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  706 GQTTLPVSELRQ-GYRH-VPL----LSREGEALSSASLFVRIAIV  744 (746)
T ss_pred             ceeeccHHHhhC-ceee-eee----cCCCCccccceeEEEEEEEe
Confidence            999999987643 2232 222    23333  2234566666664

>KOG1328|consensus

Probab=98.91  E-value=7.8e-10  Score=116.14  Aligned_cols=91  Identities=24%  Similarity=0.404  Sum_probs=78.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCE-----EeeeeeeeecCCCCCccceEEEEEeecCC----CCeEEEEEEec
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-----EINDRENYVTNQINPYFGRHFEIQGSFPT----DAKLTVEIKDH  292 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-----~~~tkt~~i~~tlnP~wne~Fef~v~~p~----~~~L~V~V~D~  292 (364)
                      +-|-|+-|+++.|.|+||.+||||+|.++++     ....+|+++.+|+||+|+|+|+|+++...    ...+.++|||+
T Consensus       949 L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDH 1028 (1103)
T KOG1328|consen  949 LVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDH 1028 (1103)
T ss_pred             hhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeecc
Confidence            3466899999999999999999999999863     23456788999999999999999987422    56899999999


Q ss_pred             CCCCCCceeEEEEeeccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRF  312 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~  312 (364)
                      |-++.+||-|++.+.|.+..
T Consensus      1029 D~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1029 DYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             ceecccccchHHHHhhCCCC
Confidence            99999999999999988864

>KOG1328|consensus

Probab=98.84  E-value=8.7e-10  Score=115.79  Aligned_cols=124  Identities=19%  Similarity=0.246  Sum_probs=99.0

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--E---------------------------EeeeeeeeecCCCCCc
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--V---------------------------EINDRENYVTNQINPY  268 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~---------------------------~~~tkt~~i~~tlnP~  268 (364)
                      ..+.+.|.+.+|+||..+|.+|.+|||+++.+-.  .                           +...-|.+.++|+||.
T Consensus       112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk  191 (1103)
T KOG1328|consen  112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK  191 (1103)
T ss_pred             CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence            3345567789999999999999999999986521  0                           1112356788999999


Q ss_pred             cceEEEEEeecCCCCeEEEEEEecCC---------------------------------CCC---CceeEEEEeeccccc
Q psy4890         269 FGRHFEIQGSFPTDAKLTVEIKDHDS---------------------------------VSK---DDYIGMTEMDLESRF  312 (364)
Q Consensus       269 wne~Fef~v~~p~~~~L~V~V~D~D~---------------------------------isk---DD~IGet~IdLenr~  312 (364)
                      |+|.|.|++..-....+++-|||+|.                                 .+.   |||+|.+.|+|.++.
T Consensus       192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            99999999988888999999999985                                 133   899999999999998


Q ss_pred             cccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         313 YSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       313 ~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      .....+|+.|+|.+-  ...-+|.|++.|++
T Consensus       272 ~~Gld~WFkLepRS~--~S~VqG~~~LklwL  300 (1103)
T KOG1328|consen  272 PDGLDQWFKLEPRSD--KSKVQGQVKLKLWL  300 (1103)
T ss_pred             cchHHHHhccCcccc--cccccceEEEEEEE
Confidence            767778888866432  23569999999999

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.71  E-value=7.9e-08  Score=105.83  Aligned_cols=123  Identities=21%  Similarity=0.301  Sum_probs=95.5

Q ss_pred             cceeEEEEEEEEEecCCCCCC--CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecC
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKD--KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHD  293 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D--~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D  293 (364)
                      +..-.+|.|+|.+|.+|...|  .++..|||+.+...+.... ||++..+++||+|||+|-+.+. .....|.++|||.+
T Consensus       432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~g-kT~v~~nt~nPvwNEt~Yi~ln-s~~d~L~LslyD~n  509 (1227)
T COG5038         432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIG-KTRVKKNTLNPVWNETFYILLN-SFTDPLNLSLYDFN  509 (1227)
T ss_pred             CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCC-ccceeeccCCccccceEEEEec-ccCCceeEEEEecc
Confidence            445678899999999999988  5899999999986543332 6678899999999999988875 55778999999999


Q ss_pred             CCCCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         294 SVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      ...+|+.+|.+.++|..+...... .-.+ . +......+.|++...+.|
T Consensus       510 ~~~sd~vvG~~~l~L~~L~~~~~~-~ne~-~-e~~~~~k~vGrL~yDl~f  556 (1227)
T COG5038         510 SFKSDKVVGSTQLDLALLHQNPVK-KNEL-Y-EFLRNTKNVGRLTYDLRF  556 (1227)
T ss_pred             ccCCcceeeeEEechHHhhhcccc-ccce-e-eeeccCccceEEEEeeee
Confidence            999999999999998766432111 1112 1 112256789999999998

>KOG1264|consensus

Probab=98.70  E-value=8.6e-08  Score=102.08  Aligned_cols=138  Identities=13%  Similarity=0.191  Sum_probs=101.2

Q ss_pred             CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC--CCCCCCCCCCccccccccccCCCcceeEEEEEEEEE
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD--RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVR  228 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p--~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~  228 (364)
                      +||.--+.+.|.+|++..++            .+...+.|..  .+.=.|. +|..+.++         ..+.|.|.|+.
T Consensus      1016 N~QTgDKpMQmNqa~F~~ng------------rcGYvLqPs~Mrte~fdP~-n~e~~~~l---------~p~~lsv~vig 1073 (1267)
T KOG1264|consen 1016 NFQTGDKPMQMNQALFSLNG------------RCGYVLQPSSMRTEKFDPM-NPESQRGL---------LPMTLSVKVLG 1073 (1267)
T ss_pred             eccCCCchhhhhHHHhhcCC------------ceeeEecchhcccccCCCC-ChHHhccc---------cceEEEEEEee
Confidence            57777788888898887776            2223333421  1111221 33345555         34677888999


Q ss_pred             ecCCCCCCCCCCCCcEEEEEECC-----EEeeeeeeeecCCCCCccc-eEEEEEeecCCCCeEEEEEEecCCCCCCceeE
Q psy4890         229 AYGLHPKDKDGKCDPYIVLKTGS-----VEINDRENYVTNQINPYFG-RHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIG  302 (364)
Q Consensus       229 A~dL~p~D~~G~sDPYV~I~Lg~-----~~~~tkt~~i~~tlnP~wn-e~Fef~v~~p~~~~L~V~V~D~D~iskDD~IG  302 (364)
                      |+.|+... .|.+.|||.|.+.+     .+.+ ++.++.+++||+|| +.|+|++..|+-..|.+.|+|.|.++...|||
T Consensus      1074 aRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~-t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~Fia 1151 (1267)
T KOG1264|consen 1074 ARHLPKLG-RSIACPFVEVEIIGAEYDTNKFK-TTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLA 1151 (1267)
T ss_pred             ccccccCC-CCccCCcEEEEEeccccCCCceE-EEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceee
Confidence            99998542 46678999998743     2333 34578999999999 99999999999999999999999999888999


Q ss_pred             EEEeeccccc
Q psy4890         303 MTEMDLESRF  312 (364)
Q Consensus       303 et~IdLenr~  312 (364)
                      ++..|+..+.
T Consensus      1152 qA~yPv~~ik 1161 (1267)
T KOG1264|consen 1152 QATYPVKAIK 1161 (1267)
T ss_pred             eeecchhhhh
Confidence            9999987653

>PLN02270 phospholipase D alpha

Probab=98.44  E-value=2.9e-06  Score=91.96  Aligned_cols=121  Identities=15%  Similarity=0.209  Sum_probs=87.3

Q ss_pred             eEEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEECCEEeeeeeeeecC-CCCCccceEEEEEeec
Q psy4890         219 NVTIRVYIVRAYGLHPKD------------------KDGKCDPYIVLKTGSVEINDRENYVTN-QINPYFGRHFEIQGSF  279 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D------------------~~G~sDPYV~I~Lg~~~~~tkt~~i~~-tlnP~wne~Fef~v~~  279 (364)
                      ...|.|+|.+|++|+..+                  ..+.+||||.|.+++.++. ||.++.+ ..||+|+|.|.+.|..
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~-rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVG-RTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEE-EEeecCCCCCCCccccceEEeecc
Confidence            456788899999887521                  1256799999999876543 3456777 4699999999999976


Q ss_pred             CCCCeEEEEEEecCCCCCCceeEEEEeeccccccc-cCCCccccccccccCCC-CCc--eEEEEEEEEeec
Q psy4890         280 PTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYS-RHRGSCARWTSDLEVSG-SSP--GEVLPGITLQSG  346 (364)
Q Consensus       280 p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s-~~~a~~gL~p~~y~~~G-~~~--GEIllSL~fq~g  346 (364)
                      +. ..+.++|-|.|.++ ..+||.+.|+.+++.-. ....|..+    ...+| +..  ..|+++|+|-..
T Consensus        86 ~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~----~~~~~~p~~~~~~~~~~~~f~~~  150 (808)
T PLN02270         86 MA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEI----LDNDKNPIHGGSKIHVKLQYFEV  150 (808)
T ss_pred             Cc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEec----cCCCCCcCCCCCEEEEEEEEEEc
Confidence            54 78999999999996 45999999999987543 23344443    11222 222  489999999443

>KOG2059|consensus

Probab=98.42  E-value=3.5e-07  Score=96.50  Aligned_cols=126  Identities=13%  Similarity=0.196  Sum_probs=96.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEE--eeeeeeeecCCCCCccceEEEEEeecC---------------CCCe
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE--INDRENYVTNQINPYFGRHFEIQGSFP---------------TDAK  284 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~--~~tkt~~i~~tlnP~wne~Fef~v~~p---------------~~~~  284 (364)
                      +++.++.++++.|.+ +|.+|||+.+...+..  ...+|..+.+|.+|.|+|.|.|.++.+               ....
T Consensus       133 ~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~  211 (800)
T KOG2059|consen  133 LVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLE  211 (800)
T ss_pred             chhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceee
Confidence            345566777777776 5569999999875422  123556789999999999999998754               2346


Q ss_pred             EEEEEEe-cCCCCCCceeEEEEeeccccc-cccCCCcccccccccc---CCCCCceEEEEEEEEeeccc
Q psy4890         285 LTVEIKD-HDSVSKDDYIGMTEMDLESRF-YSRHRGSCARWTSDLE---VSGSSPGEVLPGITLQSGEI  348 (364)
Q Consensus       285 L~V~V~D-~D~iskDD~IGet~IdLenr~-~s~~~a~~gL~p~~y~---~~G~~~GEIllSL~fq~g~~  348 (364)
                      |+|++|+ .+....++|+|++.+++.+.. .+...+|+-|+|..-.   .+|.+.|.+++.++|.+..+
T Consensus       212 irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V  280 (800)
T KOG2059|consen  212 IRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV  280 (800)
T ss_pred             EEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence            8899999 677778999999999998776 5577889999775332   24578999999999977653

>KOG1031|consensus

Probab=98.42  E-value=5.6e-07  Score=93.25  Aligned_cols=120  Identities=21%  Similarity=0.307  Sum_probs=93.2

Q ss_pred             EEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCEEeeeeeeeecCCCCCccce-EEEEEeec--CCCCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSVEINDRENYVTNQINPYFGR-HFEIQGSF--PTDAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne-~Fef~v~~--p~~~~L~V~V~D~D~i  295 (364)
                      ..|.|.|..|++|+.+|.. ...|.||.|++++...+|  .+..+++||.||. .|.|++..  -++..|.|.++|+|..
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~kt--dvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKT--DVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceeh--hhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            3467889999999999874 467999999999877766  5678999999994 68888864  3588999999999999


Q ss_pred             CCCceeEEEEeecccccccc-----CCC---ccccccccccC-CCCCceEEEEEEEE
Q psy4890         296 SKDDYIGMTEMDLESRFYSR-----HRG---SCARWTSDLEV-SGSSPGEVLPGITL  343 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s~-----~~a---~~gL~p~~y~~-~G~~~GEIllSL~f  343 (364)
                      +.+|-||.+.|++..+.++.     |+.   -.|+ -.-|++ +| -+|||.+-+..
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw-~pifdtihg-irgeinvivkv  135 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGW-FPIFDTIHG-IRGEINVIVKV  135 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeee-eecceeccc-ccceeEEEEEE
Confidence            99999999999998877651     221   1233 233443 44 68999887654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.28  E-value=3.8e-06  Score=70.35  Aligned_cols=83  Identities=16%  Similarity=0.218  Sum_probs=65.7

Q ss_pred             EEEEEEEecCCCCCC---CCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCC
Q psy4890         222 IRVYIVRAYGLHPKD---KDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSK  297 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D---~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~isk  297 (364)
                      |.|+|..|+|+.-.+   ..+.+||||.|++++. +.+|+     -+.||.||+.|.|.+.  ....+.+.|||... .+
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr-----~srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~   72 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTK-----PSRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ   72 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEecc-----CCCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence            467899999998777   5788999999999976 44443     2589999999999994  58889999999853 24


Q ss_pred             CceeEEEEeeccccc
Q psy4890         298 DDYIGMTEMDLESRF  312 (364)
Q Consensus       298 DD~IGet~IdLenr~  312 (364)
                      .-.||-..+.|.++.
T Consensus        73 ~~Pi~llW~~~sdi~   87 (109)
T cd08689          73 PVPVGLLWLRLSDIA   87 (109)
T ss_pred             ecceeeehhhHHHHH
Confidence            457899888887654

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1013|consensus

Probab=98.01  E-value=1.1e-06  Score=86.07  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=94.9

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEE--eecC-CCCeEEEEEE
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQ--GSFP-TDAKLTVEIK  290 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~--v~~p-~~~~L~V~V~  290 (364)
                      .....+.++|.+|++|+|++.+|..|||+++.++.   ...+-++++..+++||.|++.-...  ...+ ..+.+.+.|.
T Consensus        90 ~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vc  169 (362)
T KOG1013|consen   90 SESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVC  169 (362)
T ss_pred             hhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeec
Confidence            34567789999999999999999999999999864   2222344567899999999865544  3333 3678889999


Q ss_pred             ecCCCCCCceeEEEEeeccccccc---cCCC--ccccccc-cccC-CCCCceEEEEEEEEeecccCCCCccceee
Q psy4890         291 DHDSVSKDDYIGMTEMDLESRFYS---RHRG--SCARWTS-DLEV-SGSSPGEVLPGITLQSGEINSDPVRYWRS  358 (364)
Q Consensus       291 D~D~iskDD~IGet~IdLenr~~s---~~~a--~~gL~p~-~y~~-~G~~~GEIllSL~fq~g~~~~~~~~g~~~  358 (364)
                      |.+.+.+++++|+..+.|.-+-..   .++.  ..++ |. .-+. +-.++|+|++||.|..-  -...+-+|.+
T Consensus       170 dn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~l-p~~rad~~~~E~rg~i~isl~~~s~--~~~l~vt~iR  241 (362)
T KOG1013|consen  170 DNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSL-PSERADRDEDEERGAILISLAYSST--TPGLIVTIIR  241 (362)
T ss_pred             cCcccccccCcccchhhhhccChhhcchhhhhhhccC-CcccccccchhhccceeeeeccCcC--CCceEEEEEE
Confidence            999999999999999777432211   1222  1233 21 1111 23689999999999322  1224555543

>KOG1013|consensus

Probab=97.82  E-value=2e-05  Score=77.36  Aligned_cols=88  Identities=22%  Similarity=0.308  Sum_probs=72.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCCCCccceEEEEEeec--CCCCeEEEEEEecCCCC
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQINPYFGRHFEIQGSF--PTDAKLTVEIKDHDSVS  296 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tlnP~wne~Fef~v~~--p~~~~L~V~V~D~D~is  296 (364)
                      +.|.+++|..|...|.+|-+||||...+.   +.+.+.++...++++||.|++.|.+....  -....+.|+|||++.-+
T Consensus       235 l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~  314 (362)
T KOG1013|consen  235 LIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGK  314 (362)
T ss_pred             eEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCc
Confidence            45889999999999999999999999875   24555667778999999999999998752  13678999999999887


Q ss_pred             CCceeEEEEeecc
Q psy4890         297 KDDYIGMTEMDLE  309 (364)
Q Consensus       297 kDD~IGet~IdLe  309 (364)
                      ..|++|-...-+.
T Consensus       315 s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  315 SNDSIGGSMLGGY  327 (362)
T ss_pred             CccCCCccccccc
Confidence            8999987665543

>PLN02352 phospholipase D epsilon

Probab=97.61  E-value=0.00053  Score=74.46  Aligned_cols=116  Identities=16%  Similarity=0.247  Sum_probs=78.8

Q ss_pred             eeEEEEEEEEEecCCCCC----CCC-CCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPK----DKD-GKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~----D~~-G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~  292 (364)
                      -...|.++|.+|.-+...    +.. ...|||+.|.+++.++.. |   .+.-||+|+|.|.+.|..+.+..+.++|-| 
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~r-t---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAK-T---SHEYDRVWNQTFQILCAHPLDSTITITLKT-   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEec-C---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence            345677888888633221    111 112999999998866542 2   455699999999999988877889999988 


Q ss_pred             CCCCCCceeEEEEeeccccccc-c-CCCccccccccccCCC-CCce-EEEEEEEEeec
Q psy4890         293 DSVSKDDYIGMTEMDLESRFYS-R-HRGSCARWTSDLEVSG-SSPG-EVLPGITLQSG  346 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~s-~-~~a~~gL~p~~y~~~G-~~~G-EIllSL~fq~g  346 (364)
                          .-.+||.+.|+.+++.-. . ...|..+    ...+| +..| .|+++|+|...
T Consensus        83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~  132 (758)
T PLN02352         83 ----KCSILGRFHIQAHQIVTEASFINGFFPL----IMENGKPNPELKLRFMLWFRPA  132 (758)
T ss_pred             ----CCeEEEEEEEEHHHhhCCCcccceEEEc----ccCCCCCCCCCEEEEEEEEEEh
Confidence                267999999999987543 1 2334433    12222 3344 89999999444

>KOG0905|consensus

Probab=97.42  E-value=0.00011  Score=81.68  Aligned_cols=97  Identities=18%  Similarity=0.230  Sum_probs=78.6

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEee---cCCCCeEEEEEEe
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGS---FPTDAKLTVEIKD  291 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~---~p~~~~L~V~V~D  291 (364)
                      .+.+|.|-|.-|++|+-..-....||||+.++..   +..+.||+++++|.||.|||+.+..-.   .-..+.|.++||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            3567888899999996554456689999999853   445567788999999999999888732   2346899999999


Q ss_pred             cCCCCCCceeEEEEeeccccccc
Q psy4890         292 HDSVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLenr~~s  314 (364)
                      .+.+..+.++|.+.|+|....+.
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~ 1624 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLL 1624 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchh
Confidence            99999999999999999876554

>KOG1326|consensus

Probab=97.38  E-value=3.9e-05  Score=83.89  Aligned_cols=92  Identities=20%  Similarity=0.270  Sum_probs=77.4

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEE-eecCC--------CCeEE
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQ-GSFPT--------DAKLT  286 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~-v~~p~--------~~~L~  286 (364)
                      ..+...+|+||.+|+.|...|..+.+|||+.+...++...|  .++++|+||.|+++..|. +.+++        ...+.
T Consensus       202 e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T--~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v  279 (1105)
T KOG1326|consen  202 EVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKET--EVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRV  279 (1105)
T ss_pred             hhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccccccee--EeecCcCCCCccceeeccceeecCccchhhcCCCeEE
Confidence            45677889999999999999999999999999877776655  568999999999999985 44443        36788


Q ss_pred             EEEEecCCCCCCceeEEEEeecc
Q psy4890         287 VEIKDHDSVSKDDYIGMTEMDLE  309 (364)
Q Consensus       287 V~V~D~D~iskDD~IGet~IdLe  309 (364)
                      ++|||.|..+.||++|.+.....
T Consensus       280 ~e~yd~dr~g~~ef~gr~~~~p~  302 (1105)
T KOG1326|consen  280 FEVYDLDRSGINEFKGRKKQRPY  302 (1105)
T ss_pred             EEeehhhhhchHHhhcccccceE
Confidence            99999999999999999876543

>PLN02964 phosphatidylserine decarboxylase

Probab=97.25  E-value=0.00049  Score=73.87  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEE-EEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIV-LKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS  294 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~-I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~  294 (364)
                      ++...++++++++|.    ++   ..|||.. +++|.+..+|  +...+|+||+||+...|.+...+....++.|||.+.
T Consensus        50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRT--ETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR  120 (644)
T ss_pred             ccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeee--ccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence            456677889999987    32   2588766 4678888776  668999999999998888875555667999999999


Q ss_pred             CCCCceeEEEEeecccc
Q psy4890         295 VSKDDYIGMTEMDLESR  311 (364)
Q Consensus       295 iskDD~IGet~IdLenr  311 (364)
                      +++++++|-+.+||.+.
T Consensus       121 ~s~n~lv~~~e~~~t~f  137 (644)
T PLN02964        121 LSKNTLVGYCELDLFDF  137 (644)
T ss_pred             CCHHHhhhheeecHhhc
Confidence            99999999999987543

>KOG1011|consensus

Probab=97.13  E-value=0.0015  Score=69.27  Aligned_cols=122  Identities=20%  Similarity=0.286  Sum_probs=87.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----EEeeeeeeeecCCCCCccceEEEEEeec---CCCCeEEEEEEec
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-----VEINDRENYVTNQINPYFGRHFEIQGSF---PTDAKLTVEIKDH  292 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-----~~~~tkt~~i~~tlnP~wne~Fef~v~~---p~~~~L~V~V~D~  292 (364)
                      .|+|.|+.|.+|.-.. +|.--|||.+.+-+     ++.+..|+...++-.|.+||+|.|....   |+...|.++|-|+
T Consensus      1126 kvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             eEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            3567899999998865 68889999998632     2333334557788999999999998754   6678999999999


Q ss_pred             CCCCCCceeEEEEeeccccccccCCCccccc-cccccCCCCCceEEEEEEEEeec
Q psy4890         293 DSVSKDDYIGMTEMDLESRFYSRHRGSCARW-TSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~s~~~a~~gL~-p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      -....|..+|-+.+.|.+.-.   ++.|+.| |....++-...|=+.++|--||.
T Consensus      1205 CFAReDRvvGl~VlqL~~va~---kGS~a~W~pLgrrihmDeTGLtiLRILSQRs 1256 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVAD---KGSCACWVPLGRRIHMDETGLTILRILSQRS 1256 (1283)
T ss_pred             eeecccceeeeeeeehhhHhh---cCceeEeeeccccccccccchhHHHHhhhcc
Confidence            988788899999999988753   2333332 22333444556766666655554

>KOG1327|consensus

Probab=96.93  E-value=0.0022  Score=67.03  Aligned_cols=87  Identities=33%  Similarity=0.442  Sum_probs=68.5

Q ss_pred             EEEEecCCCCCCCCCCCCcEEEEEE----CCEEeeeeeeeecCCCCCccceEEEEEe----ecCCCCeEEEEEEecCCCC
Q psy4890         225 YIVRAYGLHPKDKDGKCDPYIVLKT----GSVEINDRENYVTNQINPYFGRHFEIQG----SFPTDAKLTVEIKDHDSVS  296 (364)
Q Consensus       225 ~Vv~A~dL~p~D~~G~sDPYV~I~L----g~~~~~tkt~~i~~tlnP~wne~Fef~v----~~p~~~~L~V~V~D~D~is  296 (364)
                      -.++|.+|.++|..+++|||..+.-    +......++.++++++||.|.. |.+..    ....+..+.|.+||++.-+
T Consensus       141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~  219 (529)
T KOG1327|consen  141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG  219 (529)
T ss_pred             eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence            3567899999999999999999853    2344556778899999999954 44442    2234688999999999999


Q ss_pred             CCceeEEEEeeccccc
Q psy4890         297 KDDYIGMTEMDLESRF  312 (364)
Q Consensus       297 kDD~IGet~IdLenr~  312 (364)
                      ++++||++...+..+-
T Consensus       220 ~~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  220 KHDLIGKFQTTLSELQ  235 (529)
T ss_pred             CcCceeEecccHHHhc
Confidence            9999999998877653

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.89  E-value=0.018  Score=51.54  Aligned_cols=121  Identities=14%  Similarity=0.164  Sum_probs=76.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEeee--eeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecC
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIND--RENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHD  293 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~t--kt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D  293 (364)
                      .++|.|+.+.++...+   .+|-||.+.+  |++....  .|.+++. -++.|||...|.+   .+|.++.|.|+||+..
T Consensus         9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            3578899998887643   3578888865  5543321  2334444 6799999988875   4588999999999976


Q ss_pred             CCC----CCceeEEEEeeccccc--cccCCCccccccccc-----------cCCCCCceEEEEEEEEee
Q psy4890         294 SVS----KDDYIGMTEMDLESRF--YSRHRGSCARWTSDL-----------EVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       294 ~is----kDD~IGet~IdLenr~--~s~~~a~~gL~p~~y-----------~~~G~~~GEIllSL~fq~  345 (364)
                      .-.    ..-.||.+.+.|-+..  +.+......+|+...           +.+.++.+...+++.|++
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~~~~~~~~~np~g~~~~Np~~~~~~l~~~f~~  153 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWPVPHGLEDLLNPIGVTGSNPNKDTPCLELEFDR  153 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEcCCcCchhhcCCcCcCcCCCCCCceEEEEEECC
Confidence            421    1246999999985522  223333455555311           112245566777777743

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=96.63  E-value=0.0034  Score=54.65  Aligned_cols=91  Identities=22%  Similarity=0.337  Sum_probs=64.9

Q ss_pred             EEEEEEecCCCCCCC-----C--------CCCCcEEEEEEC--CEEeeeeeeeecCCCCCccceEEEEEeecC-------
Q psy4890         223 RVYIVRAYGLHPKDK-----D--------GKCDPYIVLKTG--SVEINDRENYVTNQINPYFGRHFEIQGSFP-------  280 (364)
Q Consensus       223 rV~Vv~A~dL~p~D~-----~--------G~sDPYV~I~Lg--~~~~~tkt~~i~~tlnP~wne~Fef~v~~p-------  280 (364)
                      .|.|++|.||+....     +        =..++||.+.+.  ++....+|+.+.++..|.|+..++|.|++-       
T Consensus         2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge   81 (143)
T cd08683           2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGE   81 (143)
T ss_pred             eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCc
Confidence            467888888864321     0        124789999864  333334456689999999999999998731       


Q ss_pred             --------CCCeEEEEEEecCCC----------CCCceeEEEEeecccccc
Q psy4890         281 --------TDAKLTVEIKDHDSV----------SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       281 --------~~~~L~V~V~D~D~i----------skDD~IGet~IdLenr~~  313 (364)
                              +...+.++||+...-          .+|=++|.+.||+.+++-
T Consensus        82 ~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~  132 (143)
T cd08683          82 AISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLT  132 (143)
T ss_pred             cccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhh
Confidence                    146789999997542          245578999999988764

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1265|consensus

Probab=96.40  E-value=0.0071  Score=66.15  Aligned_cols=134  Identities=15%  Similarity=0.194  Sum_probs=91.6

Q ss_pred             CccccccccccccccccCCCCCccccceeeEEEeeEEEeecCCCCCCCCCCCccccccccccCCCcceeEEEEEEEEEec
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAY  230 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A~  230 (364)
                      |||.-+.-+.|.-|++.-++.       .|.     .+.|.  =.+.|+...+.|..-    |-.+.+...+.|.|++|+
T Consensus       652 NfQT~dlaMQlN~g~FEyNG~-------sGY-----llKPd--fmRrpDr~fdPFse~----~VdgvIA~t~sV~VISgq  713 (1189)
T KOG1265|consen  652 NFQTPDLAMQLNMGMFEYNGG-------SGY-----LLKPD--FMRRPDRQFDPFSES----PVDGVIAATLSVTVISGQ  713 (1189)
T ss_pred             eccCccHHHHhhhhheeecCC-------ccc-----eeChH--HhhCCCcCcCCcccC----cccceEEeeEEEEEEeee
Confidence            688888889999999877762       222     22332  011111111113332    445668889999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEECC-------EEeeeeeeeecCCCCCccce-EEEEE-eecCCCCeEEEEEEecCCCCCCcee
Q psy4890         231 GLHPKDKDGKCDPYIVLKTGS-------VEINDRENYVTNQINPYFGR-HFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       231 dL~p~D~~G~sDPYV~I~Lg~-------~~~~tkt~~i~~tlnP~wne-~Fef~-v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      -|..++    ...||.|.+-+       +..+|++ ...+++||+|++ .|.|. +.+|.-..|.|.||+..    ..+|
T Consensus       714 FLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt-~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg----gK~i  784 (1189)
T KOG1265|consen  714 FLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRT-VQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG----GKFI  784 (1189)
T ss_pred             eccccc----cCceEEEEecCCCchhhhhhhhhcc-ccCCCCCcccccCCcccceecccchhheeeeeeccC----Ccee
Confidence            997765    44899998632       2334443 346899999996 58986 67799999999999965    4699


Q ss_pred             EEEEeecccc
Q psy4890         302 GMTEMDLESR  311 (364)
Q Consensus       302 Get~IdLenr  311 (364)
                      |+-.+++..+
T Consensus       785 g~RIlpvd~l  794 (1189)
T KOG1265|consen  785 GQRILPVDGL  794 (1189)
T ss_pred             eeeccchhcc
Confidence            9999998755

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.73  E-value=0.057  Score=48.70  Aligned_cols=106  Identities=11%  Similarity=0.104  Sum_probs=70.6

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEeeee--ee----eecCCCCCccceEEEEEe---ecCCCCeEEEE
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEINDR--EN----YVTNQINPYFGRHFEIQG---SFPTDAKLTVE  288 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~tk--t~----~i~~tlnP~wne~Fef~v---~~p~~~~L~V~  288 (364)
                      ..++|.|..+.++++.......|-||.+.+  |++.....  |.    +..-...+.||+...|.+   .+|.++.|.|+
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            446788889999988765556788888865  55433211  11    111223577999988875   45889999999


Q ss_pred             EEecCCCC---------CCceeEEEEeecccc--ccccCCCccccccc
Q psy4890         289 IKDHDSVS---------KDDYIGMTEMDLESR--FYSRHRGSCARWTS  325 (364)
Q Consensus       289 V~D~D~is---------kDD~IGet~IdLenr--~~s~~~a~~gL~p~  325 (364)
                      ||+....+         .+..||-+.++|-+.  .+....-..+||+.
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~  135 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPP  135 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccC
Confidence            99987554         356899999998553  22233344566654

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.73  E-value=0.1  Score=47.37  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=67.2

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecC
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHD  293 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D  293 (364)
                      .++|+|+.+.++...+  ...+-||.+.+  |++...  ..|.+++..-++.|||...|.+   .+|.+..|.|+||+..
T Consensus         9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            4678889988887622  33566777654  554432  1334455556799999998875   4588999999999975


Q ss_pred             CCC----------------CCceeEEEEeeccccc--cccCCCccccccc
Q psy4890         294 SVS----------------KDDYIGMTEMDLESRF--YSRHRGSCARWTS  325 (364)
Q Consensus       294 ~is----------------kDD~IGet~IdLenr~--~s~~~a~~gL~p~  325 (364)
                      ...                .+..||.+.+.|-+..  +........+|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW~~  136 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMWTY  136 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEecCC
Confidence            422                2468999999985522  2223334555553

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=95.60  E-value=0.017  Score=47.37  Aligned_cols=86  Identities=13%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             EEEEEecCCCCCCCCCC-CCcEEEEEE-CCEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCCCCc
Q psy4890         224 VYIVRAYGLHPKDKDGK-CDPYIVLKT-GSVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       224 V~Vv~A~dL~p~D~~G~-sDPYV~I~L-g~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~iskDD  299 (364)
                      ++|+.|+||.-....|. ..-|++--+ .++....|+.....+.||+|.|+|.|.+.+-  .+-.|.+.|+.  ...+.+
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe   80 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR   80 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence            67899999976544332 223444222 2344555667788999999999999997653  36678899998  455788


Q ss_pred             eeEEEEeecccc
Q psy4890         300 YIGMTEMDLESR  311 (364)
Q Consensus       300 ~IGet~IdLenr  311 (364)
                      .||.+.+.|.+.
T Consensus        81 ~iG~~sL~l~s~   92 (103)
T cd08684          81 TIGECSLSLRTL   92 (103)
T ss_pred             eeeEEEeecccC
Confidence            999999988764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060|consensus

Probab=95.52  E-value=0.0088  Score=60.02  Aligned_cols=94  Identities=18%  Similarity=0.296  Sum_probs=73.3

Q ss_pred             EEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEE-ecCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIK-DHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~-D~D~  294 (364)
                      ..+.|-|++|++|..+... ..++|||+|++...   ..+.+++...+|+.|.+-....|.-+ |..+.|.++|| |+..
T Consensus       269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gdygR  347 (405)
T KOG2060|consen  269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGDYGR  347 (405)
T ss_pred             CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEeccccc
Confidence            3567889999999876543 36899999997432   23335566789999988877777776 67888999998 5677


Q ss_pred             CCCCceeEEEEeeccccccc
Q psy4890         295 VSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s  314 (364)
                      +-++.|+|.+.|-|+++-++
T Consensus       348 md~k~fmg~aqi~l~eL~ls  367 (405)
T KOG2060|consen  348 MDHKSFMGVAQIMLDELNLS  367 (405)
T ss_pred             cchHHHhhHHHHHhhhhccc
Confidence            77889999999999988775

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.48  E-value=0.1  Score=45.98  Aligned_cols=103  Identities=14%  Similarity=0.184  Sum_probs=63.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee-e-eeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecCC
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN-D-RENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHDS  294 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~-t-kt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D~  294 (364)
                      ++|.|....++.+.+ ....+-||.+++  |++... . .+.......++.|||...|.+   .+|.++.|.|+||+.+.
T Consensus        10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~   88 (156)
T cd08380          10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE   88 (156)
T ss_pred             eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence            455566666665521 233556666654  443221 1 112222336799999988874   46889999999999876


Q ss_pred             CC--CCceeEEEEeeccccc--cccCCCccccccc
Q psy4890         295 VS--KDDYIGMTEMDLESRF--YSRHRGSCARWTS  325 (364)
Q Consensus       295 is--kDD~IGet~IdLenr~--~s~~~a~~gL~p~  325 (364)
                      .+  ++..||.+.++|-+..  +........+|+.
T Consensus        89 ~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~  123 (156)
T cd08380          89 PGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWPG  123 (156)
T ss_pred             CCCCcceEEEEEeEEeEcccCcEecCCEEEeccCC
Confidence            54  4679999999985532  2233334556553

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.48  E-value=0.067  Score=47.93  Aligned_cols=71  Identities=14%  Similarity=0.236  Sum_probs=51.4

Q ss_pred             CCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEee---cCCCCeEEEEEEecCCCCCCceeEEEEeeccc
Q psy4890         240 KCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQGS---FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       240 ~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v~---~p~~~~L~V~V~D~D~iskDD~IGet~IdLen  310 (364)
                      .+|-||.+.+  +++...  ..|.+++-+..+.|||...|.+.   +|.++.|.|+|||.+..++...||.+.++|-+
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            3566666654  333221  13345666677899999888764   58899999999998866667799999999865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.14  E-value=0.68  Score=39.64  Aligned_cols=121  Identities=12%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEE--eeeeeeeecCCCCCccceEEEEEeecC--------CCCeEEE
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE--INDRENYVTNQINPYFGRHFEIQGSFP--------TDAKLTV  287 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~--~~tkt~~i~~tlnP~wne~Fef~v~~p--------~~~~L~V  287 (364)
                      .++.+.|.|.+..+++.    ...--+|+...++..  ..+.......+-.-.|++.|.+.+++.        ....+.+
T Consensus         5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            45677888888888877    224456666666553  222223344566789999999998752        2567899


Q ss_pred             EEEecCCCCCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEee
Q psy4890         288 EIKDHDSVSKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       288 ~V~D~D~iskDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq~  345 (364)
                      .|+....-++...+|.+.|||.+..-.. ......+ +..-+  ......|.++|.+..
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~-~l~~~--~~~~a~L~isi~~~~  136 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRL-LLKKC--KKSNATLSISISLSE  136 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEE-eCccC--CCCCcEEEEEEEEEE
Confidence            9998753333368999999998764321 1111112 22212  133466777777743

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=92.41  E-value=1.6  Score=39.28  Aligned_cols=123  Identities=12%  Similarity=0.137  Sum_probs=79.7

Q ss_pred             ceeEEEEEEEEEecCCCCCCC--CCCCCcEEEEE--ECCEEeeeeeeeecCCCCCccceEEEEEeecCC-----------
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDK--DGKCDPYIVLK--TGSVEINDRENYVTNQINPYFGRHFEIQGSFPT-----------  281 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~--~G~sDPYV~I~--Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~-----------  281 (364)
                      |.+..+.+.|+.|+-....-.  .|..+.-+.+.  +++++..+  +.++.+.+|.|++.|-|++....           
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S--~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll   83 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRS--KPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL   83 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEec--CCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence            455566788888764322111  14444444444  46777766  55899999999999999875331           


Q ss_pred             --CCeEEEEEEecCCCCCCceeEEEEeeccccccccCCCcccccccccc-CCC---CCceEEEEEEEE
Q psy4890         282 --DAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLE-VSG---SSPGEVLPGITL  343 (364)
Q Consensus       282 --~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~-~~G---~~~GEIllSL~f  343 (364)
                        ...+++.|.-.|..+...++|...+|....+.+....+ ++ +.+.+ +..   ..+|-|.++|.+
T Consensus        84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~-~~-~vEL~G~~~e~kv~~GiL~l~lEL  149 (156)
T PF15627_consen   84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGST-SF-TVELCGVGPESKVPVGILDLRLEL  149 (156)
T ss_pred             cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCcc-ce-eEEEeccCCCCccceeEEEEEEEe
Confidence              45688888888877777899999999876665433211 22 22222 222   368999998877

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.41  E-value=0.74  Score=39.93  Aligned_cols=53  Identities=21%  Similarity=0.303  Sum_probs=40.4

Q ss_pred             eeecCC-CCCccceEEEEEe---ecCCCCeEEEEEEecCCCCCC----ceeEEEEeecccc
Q psy4890         259 NYVTNQ-INPYFGRHFEIQG---SFPTDAKLTVEIKDHDSVSKD----DYIGMTEMDLESR  311 (364)
Q Consensus       259 ~~i~~t-lnP~wne~Fef~v---~~p~~~~L~V~V~D~D~iskD----D~IGet~IdLenr  311 (364)
                      ...+-+ .++.|++...|.+   .+|.++.|.|+||..+....+    ..||.+.++|-+.
T Consensus        25 ~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   25 SYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             cccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            334444 7999999999985   458899999999998876555    6999999998653

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>KOG3837|consensus

Probab=90.76  E-value=0.33  Score=49.73  Aligned_cols=122  Identities=16%  Similarity=0.196  Sum_probs=83.9

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCCCCccceEEEEEeec-CC----------CC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQINPYFGRHFEIQGSF-PT----------DA  283 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tlnP~wne~Fef~v~~-p~----------~~  283 (364)
                      ..-.+.+.|+++++++.....-..|-|+++...   ....+++|+++..|-+|.|++.|-+.+.- |+          ..
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            445567888999888654322235778887642   35677788999999999999999998753 21          46


Q ss_pred             eEEEEEEecCC-CCCCceeEEEEeeccccccccCCCccccccccccC-CC--CCceEEEEEEEEee
Q psy4890         284 KLTVEIKDHDS-VSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEV-SG--SSPGEVLPGITLQS  345 (364)
Q Consensus       284 ~L~V~V~D~D~-iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~-~G--~~~GEIllSL~fq~  345 (364)
                      .++|+||+... +.+|.++|.+.|.|+-+-     ..|.+ -..|.+ +|  ..-|.+.+.+...+
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Le-----n~cei-~e~~~l~DGRK~vGGkLevKvRiR~  504 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILE-----NMCEI-CEYLPLKDGRKAVGGKLEVKVRIRQ  504 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhh-----cccch-hhceeccccccccCCeeEEEEEEec
Confidence            68999999865 457889999999987542     23444 223332 34  34577777766643

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=90.43  E-value=3.2  Score=34.29  Aligned_cols=84  Identities=14%  Similarity=0.220  Sum_probs=58.5

Q ss_pred             CCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeeccccccccCCCcc
Q psy4890         241 CDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSC  320 (364)
Q Consensus       241 sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~  320 (364)
                      ++-.+++.+.+..... |.- +...+..|++.|.++..  ..+.|.|+||-.|-   ..+.|-..+.||+.   .|..  
T Consensus         9 ~eV~avLklDn~~Vgq-T~W-k~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~---~~~~--   76 (98)
T cd08687           9 SEVSAVLKLDNTVVGQ-TQW-KPKSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDE---RHEV--   76 (98)
T ss_pred             cceEEEEEEcCeEEee-ccc-cccccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhh---cccc--
Confidence            5677778777654432 222 23357899999998884  67899999998874   45788889999983   2322  


Q ss_pred             ccccccccCCCCCceEEEEEEEE
Q psy4890         321 ARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       321 gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                             +..-..+|.+...+.|
T Consensus        77 -------~~~lepqg~l~~ev~f   92 (98)
T cd08687          77 -------QLDMEPQLCLVAELTF   92 (98)
T ss_pred             -------eeccccccEEEEEEEe
Confidence                   2233568889888888

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=89.68  E-value=5.3  Score=40.22  Aligned_cols=119  Identities=13%  Similarity=0.182  Sum_probs=83.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeec-------CCCCeEEEEEEecC-
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSF-------PTDAKLTVEIKDHD-  293 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~-------p~~~~L~V~V~D~D-  293 (364)
                      |-|.|++|+|.+...   .-.-.+..++.+....|  ..++.+-.|.||.....++.-       .+...++++.|-.| 
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~T--Dpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~   76 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLET--DPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG   76 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeee--cCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence            447899999998762   23445666787777766  457889999999988888753       34778999999998 


Q ss_pred             CCCCCceeEEEEeeccccccccCCCccccccccccCCC------CCceEEEEEEEEeec
Q psy4890         294 SVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSG------SSPGEVLPGITLQSG  346 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G------~~~GEIllSL~fq~g  346 (364)
                      .-++-+.||.+.+||-....+..+... ..+.||.+-+      ...-||+++|..+..
T Consensus        77 ~~~~re~iGyv~LdLRsa~~~~~~~~~-~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~  134 (340)
T PF12416_consen   77 STGKRESIGYVVLDLRSAVVPQEKNQK-QKPKWYKLLSSSSKYKKHKPELLLSLSIEDD  134 (340)
T ss_pred             CCCcceeccEEEEEccccccccccccc-cCCCeeEccccccccccCCccEEEEEEEecc
Confidence            556788999999999776332222111 2244554322      246789999999544

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=88.84  E-value=2.7  Score=38.44  Aligned_cols=88  Identities=14%  Similarity=0.120  Sum_probs=52.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEe-eeeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecCCC
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEI-NDRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHDSV  295 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~-~tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D~i  295 (364)
                      +||.|..+..+. .+.+....-||.+.+  |++.. ..+|.+.+.+-++.|||...|.+   .+|.++.|.|+||+...-
T Consensus        12 friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~   90 (178)
T cd08399          12 FRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP   90 (178)
T ss_pred             EEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence            456666665332 222222234555433  44322 22345666677899999988875   458899999999997321


Q ss_pred             C----------------CCceeEEEEeeccc
Q psy4890         296 S----------------KDDYIGMTEMDLES  310 (364)
Q Consensus       296 s----------------kDD~IGet~IdLen  310 (364)
                      +                .+-.||-+.+.|-+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          91 ALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             cccccccccccccccccccceEEEEEEEEEc
Confidence            1                14467778888754

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=88.54  E-value=3.2  Score=34.03  Aligned_cols=70  Identities=14%  Similarity=0.189  Sum_probs=43.9

Q ss_pred             EEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecC
Q psy4890         224 VYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHD  293 (364)
Q Consensus       224 V~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D  293 (364)
                      +++....+.........++-||.+.+  |++...  ..|.+++-...+.|||...|.+   .+|.+..|.|+||+..
T Consensus        15 ~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       15 ITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             EEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            44455555444332222577787765  444332  1234555566799999988875   4588999999999964

Outlier of C2 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	364
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		1e-05
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		1e-05
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-05
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		1e-04
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-04
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		4e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		4e-04

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIND-RENYVTN 263
           GAL+ S+  ++ N  ++  I+RA GL P D +G  DPY+ L    G+ + N  R   + N
Sbjct: 14  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLE 309
             NP +    +  G    D +   L + + D D    +++IG T   L+
Sbjct: 74  TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 122

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIND-RENYVTN 263
           GAL+ S+  ++ N  ++  I+RA GL P D +G  DPY+ L    G+ + N  R   + N
Sbjct: 16  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLE 309
             NP +    +  G    D +   L + + D D    +++IG T   L+
Sbjct: 76  TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 124

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYI------------VLKTGSVEI 254
           G +Q  I+ +  N+ I  +I++A  L P+D +G  DP++            V++  S E 
Sbjct: 7   GEIQLQINYDLGNLII--HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 255 NDRENYVTNQINPYFGR---HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
             R  YV   +NP + +   +  I         L V + D+D  S +D++G   +DL S 
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS- 123
Query: 312 FYSRHRGSCARW 323
             + H  +  RW
Sbjct: 124 --TSHLDNTPRW 133

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
           L+  + +EK++VT+R     A  L P D +G  DPY+ LK       E   +   + + +
Sbjct: 9   LKAEVTDEKLHVTVR----DAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTL 64
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
           NP +   F  +      D +L+VEI D D  +++D++G
Sbjct: 65  NPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMG 102

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
           L+  + +EK++VT+R     A  L P D +G  DPY+ LK       E   +   + + +
Sbjct: 10  LKAEVTDEKLHVTVR----DAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTL 65
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
           NP +   F  +      D +L+VEI D D  +++D++G
Sbjct: 66  NPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMG 103

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
           +Q  ID E + V +R     A  L P D +G  DPY+ LK       E   +   +   +
Sbjct: 24  IQAHIDREVLIVVVR----DAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSL 79
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
           NP +   F  Q      D +L+VEI D D  S++D++G
Sbjct: 80  NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 117

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
           +Q  ID E + V +R     A  L P D +G  DPY+ LK       E   +   + + +
Sbjct: 165 IQAHIDREVLIVVVR----DAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSL 220
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
           NP +   F  Q      D +L+VEI D D  S++D++G
Sbjct: 221 NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 258

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 209 LQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQI 265
           L+  + +EK++VT+R     A  L P D +G  DPY+ LK       E   +   + + +
Sbjct: 11  LKAEVADEKLHVTVR----DAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTL 66
Query: 266 NPYFGRHFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG 302
           NP +   F  +      D +L+VEI D D  +++D+ G
Sbjct: 67  NPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFXG 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	4e-16
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-14
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-14
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-14
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	8e-14
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-12
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-12
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	7e-12
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-07
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	8e-11
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-10
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-10
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-10
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-10
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-10
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-10
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-10
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	6e-09
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-08
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-08
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-08
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-08
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-08
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	6e-08
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	7e-08
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-07
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-07
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-07
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-07
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	4e-07
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-06
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-06
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-06
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-05
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	8e-04

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 74.0 bits (182), Expect = 4e-16
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 205 SNGALQESIDNEKVNV-TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTN 263
           +       +  ++ N   +RV ++   GL  KD  G  DPY+ +           +  T 
Sbjct: 4   TCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTK 63

Query: 264 QI----NPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGS 319
            I    NP +      +   P   +L  E+ D + +++DD++G  ++ L        R  
Sbjct: 64  TIKKSLNPKWNEEILFRVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLE 122

Query: 320 CARWTSDLEVSGSSPGEVLPG-ITLQ 344
                 D  +   S    + G + L+
Sbjct: 123 RPYTFKDFVLHPRSHKSRVKGYLRLK 148

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ-INPYFGRHFEIQGSF 279
           T+ V +V A GL   D     DPY+ L   + +   + N        P +   F    S 
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWNETFIFTVSE 68

Query: 280 PTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
            T  +L  +I D D  ++DD +G   + LE 
Sbjct: 69  GTT-ELKAKIFDKDVGTEDDAVGEATIPLEP 98

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 205 SNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ 264
            +G+   S+ +  +   +++ ++ A     K       PY+ +         +     N 
Sbjct: 21  DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSK--KTEKCNNT 78

Query: 265 INPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWT 324
            +P + +   +       +KL   +  H ++  D  +G   +D+       +        
Sbjct: 79  NSPKWKQPLTV--IVTPVSKLHFRVWSHQTLKSDVLLGTAALDI-YETLKSNNMKLEEVV 135

Query: 325 SDLEVSGSSPGEVLPG 340
             L++ G        G
Sbjct: 136 VTLQLGGDKEPTETIG 151

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
            ++V +++A  L   D  GK DP+ +L+ G+  +  + + V   +NP + + F       
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL--QTHTVYKNLNPEWNKVFTFPIKDI 71

Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
            D  L V + D D     D++G   + L S
Sbjct: 72  HD-VLEVTVFDEDGDKPPDFLGKVAIPLLS 100

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 68.0 bits (166), Expect = 8e-14
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI----NPYFGRHFEIQ 276
            +RV ++   GL  KD  G  DPY+ +           +  T  I    NP +      +
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68

Query: 277 GSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGE 336
              P   ++  E+ D + +++DD++G  ++ L        R        D  +   S   
Sbjct: 69  VL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS 127

Query: 337 VLPG 340
            + G
Sbjct: 128 RVKG 131

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 16/123 (13%)

Query: 221 TIRVYIVRAYGLHPKD-----------KDGKCDPYIVLKTGSVEINDRENYVTNQINPYF 269
            +++ I  A  L P             +    DPYI L      I  +        +P +
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI-GQTATKQKTNSPAW 65

Query: 270 GRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEV 329
              F          K+ + +     +  DD++    +  E             W  DLE 
Sbjct: 66  HDEFVT--DVCNGRKIELAVFHDAPIGYDDFVANCTIQFEE-LLQNGSRHFEDWI-DLEP 121

Query: 330 SGS 332
            G 
Sbjct: 122 EGK 124

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 15/123 (12%)

Query: 221 TIRVYIVRAYGLHPKDKDGK----------CDPYIVLKTGSVEINDRENYVTNQINPYFG 270
            +RV I  A GL P     +           DPY+ +    V +  + +       P + 
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVG-QTSTKQKTNKPTYN 88

Query: 271 RHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES-RFYSRHRGSCARWTSDLEV 329
             F           L + +     +  D ++    +  +     +    +   W  DLE 
Sbjct: 89  EEFCAN--VTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWV-DLEP 145

Query: 330 SGS 332
            G 
Sbjct: 146 EGK 148

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 61.7 bits (150), Expect = 7e-12
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
            +RV +  A  + PK K GK DP + +     +   +   V N++NP +    E      
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKK--KTKKVDNELNPVWNEILEFDLRGI 64

Query: 281 ---TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
                + L + +KD +++ ++  IG   + L+ 
Sbjct: 65  PLDFSSSLGIIVKDFETIGQNKLIGTATVALKD 97

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTN 263
           GAL+ S+  ++ N  ++  I+RA GL P D +G  DPY  + L  G+ + N      + N
Sbjct: 16  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75

Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLES 310
             NP +    +  G    D +   L + + D D    +++IG T   L+ 
Sbjct: 76  TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY-----V 261
           G LQ S+D +  N  + V I++A  L   D  G  DPY+ +      + D++        
Sbjct: 6   GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFL----LPDKKKKFETKVH 61

Query: 262 TNQINPYFGRHF--EIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGS 319
              +NP F   F  ++  S      L + + D D  SK D IG  ++ + +  +      
Sbjct: 62  RKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121

Query: 320 CARWTSDLEVSGSSPGEVLPGITLQS 345
                S  +      G++   +    
Sbjct: 122 WRDLQSAEKEEQEKLGDICFSLRYVP 147

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGR--HFEIQ 276
           + V I+ A  L   D  G  DPY  I L      +  ++     N +NPY+     FE+ 
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211

Query: 277 GSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
                  ++ V + D+D + K+D IG   +   S 
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 58.7 bits (142), Expect = 8e-11
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPT 281
           I + +V A GL  KDK G  DPY+ ++ G  +   R   +   +NP +  +F  +    +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKK--RTKTIYGNLNPVWEENFHFECHNSS 76

Query: 282 DAKLTVEIKDHD-----------SVSKDDYIGMTEMDLES 310
           D ++ V + D D               DD++G T +++ +
Sbjct: 77  D-RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT 115

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN-----YV 261
           G LQ S+D +  N  + V I++A  L   D  G  DPY+ +      + D++        
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFL----LPDKKKKFETKVH 76

Query: 262 TNQINPYFGRHFE--IQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
              +NP F   F   +  S      L + + D D  SK D IG  ++ + +
Sbjct: 77  RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN-----YV 261
           G LQ S+D +  N  + V I++A  L   D  G  DPY+ +      + D++        
Sbjct: 29  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFL----LPDKKKKFETKVH 84

Query: 262 TNQINPYFGRHFE--IQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
              +NP F   F   +  S      L + + D D  SK D IG  ++ + +
Sbjct: 85  RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 135

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQI----NPYFGRHFEIQG 277
           IR+ ++ A  L  KD     DP+  +          + + T+ +    +P + +H+++  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVD----GSGQCHSTDTVKNTLDPKWNQHYDLYV 62

Query: 278 SFPTDAKLTVEIKDHDSVSKDD---YIGMTEMDLES 310
                  +T+ + +H  + K     ++G   +   +
Sbjct: 63  GKTD--SITISVWNHKKIHKKQGAGFLGCVRLLSNA 96

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQG 277
            + V +  A  L P D +G  DPY  + L       + ++   +   +NP +   F  Q 
Sbjct: 32  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91

Query: 278 SFP-TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
                D +L+VEI D D  S++D++G     +  
Sbjct: 92  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 223 RVYIVRAYGLH---PKDKDGKCDPYIVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQGS 278
            V ++RA  +      D     DPY+ L   +   + +   +  N INP +   FE    
Sbjct: 6   TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 65

Query: 279 FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
              +  L + + D +    D+ +G     + S
Sbjct: 66  PNQENVLEITLMDAN-YVMDETLGTATFTVSS 96

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN-----YV 261
           G +Q S+       T+ V I++A  L  KD  G  DP++ +      + D+++       
Sbjct: 13  GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYL----LPDKKHKLETKVK 68

Query: 262 TNQINPYFGRHFEIQGSFPTDA---KLTVEIKDHDSVSKDDYIGMTEMDLES 310
              +NP++   F  +G          L +++ D+D  S++D IG   + L  
Sbjct: 69  RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNK 120

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 223 RVYIVRAYGLHPKDKDGKCDPYIVL------------KTGSVEINDRENYVTNQINPYFG 270
            ++I++A  L P+D +G  DP++ +            +  S E   R  YV   +NP + 
Sbjct: 21  IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80

Query: 271 RHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLES 310
           +    +           L V + D+D  S +D++G   +DL S
Sbjct: 81  QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN-----YV 261
           G +  ++     +  + V I++A  L  KD +G  DPY+ +      + DR+        
Sbjct: 7   GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYL----LPDRKKKFQTKVH 62

Query: 262 TNQINPYFGRHFEIQGSF--PTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGS 319
              +NP F   F+           KL   + D D  S+ D IG   +D       +    
Sbjct: 63  RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDR 122

Query: 320 CA-RWTSDLEVSGSSPGEVLPGITLQS 345
              R   +     +  GE+   +    
Sbjct: 123 PLWRDILEGGSEKADLGELNFSLCYLP 149

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 195 HLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEI 254
            ++    +    G L  S+        + V I++A  L   D  G  DPY+     S+  
Sbjct: 127 DILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKA---SLIS 183

Query: 255 NDRENY------VTNQINPYFGR--HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEM 306
             R           N +NP +     F++      +  L++ + D+D +  ++ IG+  +
Sbjct: 184 EGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

Query: 307 DLES 310
             E+
Sbjct: 244 GPEA 247

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGK-CDPYIVLKTGSVEINDREN-----Y 260
           G L  S++         V I  A GL   D+     DPYI +      + ++++      
Sbjct: 9   GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI----LPEKKHKVKTRV 64

Query: 261 VTNQINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKDDYIGMTEMDLES 310
           +   ++P F   F   G   T  +   L   I   D  S+DD IG   + L  
Sbjct: 65  LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK----TGSVEINDRENYVT 262
             +Q ++  ++ N    + I++   L    +       I +     + S     R   + 
Sbjct: 30  TRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD 89

Query: 263 NQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTEMDL 308
                 F   F +  S+P      L V++   D    ++ +G  ++ L
Sbjct: 90  ASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISL 137

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGR--HFEIQ 276
           + V I+ A  L   D  G  DPY+   +++ G      +     N +NPY+     FE+ 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 277 GSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
                  ++ V + D+D + K+D IG   +   S 
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 205 SNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY---- 260
           S G L  S+       +I V I++A  L   D  G  DPY+ +      +   +      
Sbjct: 1   SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVW----LMYKDKRVEKKK 56

Query: 261 ---VTNQINPYFGR--HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
                  +NP F     F+I      +  + + + D D +S++D IG   +  +S 
Sbjct: 57  TVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 15/112 (13%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDREN------Y 260
             L   +D +     + V  + A      + DG CD Y+         N   +       
Sbjct: 13  PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSV----ANRTGSVEAQTAL 65

Query: 261 VTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
              Q++  +     +  +      A LT+ ++  D  S+    G   + L+ 
Sbjct: 66  KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 200 SGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDR 257
            G P   G L  S+  +    T+ V +++A  L   D  G  DPY  + L      I+ +
Sbjct: 10  GGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKK 69

Query: 258 E-NYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
           + +      N  F   F       +  +  +   + D +  S+++ IG   +   + 
Sbjct: 70  KTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 126

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKD-KDGKCDPY--IVLKTGSVEINDRE-NYVT 262
           G +  S+  E+   ++ V++   + L   D    + +PY    L         R+ +   
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69

Query: 263 NQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
           + +NP +      +          L   +  H    ++ ++G  E+ ++S
Sbjct: 70  DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 224 VYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQGSFP 280
           V I+R   L   D +G  DP+  + LK    +    +       +NP F   F       
Sbjct: 41  VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100

Query: 281 T--DAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
                 L + + D+D    +DYIG  ++ + ++
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 224 VYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTNQINPYFGRHFEIQGSFP 280
           + ++    L  +D     +PY    L   + + + R+        NP F       G   
Sbjct: 24  IMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSK 82

Query: 281 TDAK---LTVEIKDHDSVSKDDYIGMTEMDLES 310
              +   L + +   +S+ ++ ++G   + L+ 
Sbjct: 83  ETLRQRELQLSVLSAESLRENFFLGGITLPLKD 115

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTN 263
           G L   +  +KV   + V I+ A  L  ++     +PY  I       + N R    V  
Sbjct: 8   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67

Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKD--DYIGMTEMDLES 310
            + P + + F        + +   L + + D   V ++  +++G   ++LE+
Sbjct: 68  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 119

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTN 263
           G L   +  +KV   + V I+ A  L  ++     +PY  I       + N R    V  
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64

Query: 264 QINPYFGRHFEIQGSFPTDAK---LTVEIKDHDSVSKD--DYIGMTEMDLES 310
            + P + + F        + +   L + + D   V ++  +++G   ++LE+
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 116

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 18/125 (14%)

Query: 200 SGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHP-------KDKDGKCDPYIVLKTGSV 252
           SG     G L  S   + ++  + V ++ A  L P       +      +PY+ +     
Sbjct: 6   SGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICL--- 62

Query: 253 EINDRENY-----VTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTE 305
            + D++N            P F   +  +  F       L + + D D  S+   IG   
Sbjct: 63  -LPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121

Query: 306 MDLES 310
           + L  
Sbjct: 122 VPLCE 126

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPY--IVLKTGSVEINDRE-NYVTN 263
           G +Q +I +      + V +     L    +DG  DPY  + L         R+ +    
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69

Query: 264 QINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDD--YIGMTEMDLES 310
            +NP F + F+   S P      L V +K+       D   +G   + L S
Sbjct: 70  TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALAS 120

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 48.4 bits (114), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 223 RVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP-T 281
            V   RA  L         D Y+ +  G  E   R   V N  NP +    + +     T
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEF--RTGVVWNNNNPRWTDKMDFENVLLST 453

Query: 282 DAKLTVEIKDHDSVSKDDYIGMTEMDLESR 311
              L V++ D D    DD +G  +    S 
Sbjct: 454 GGPLRVQVWDADYGWDDDLLGSCDRSPHSG 483

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 48.4 bits (114), Expect = 2e-06
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 223 RVYIVRAYGLH---PKDKDGKCDPYIVLKTGSVEIND-RENYVTNQINPYFGRHFEIQGS 278
            V ++RA  +      D     DPY+ L   +   +  R  +  N INP +   FE    
Sbjct: 21  TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 80

Query: 279 FPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARW 323
              +  L + + D + V  D+ +G     + S      +     +
Sbjct: 81  PNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 42/242 (17%), Positives = 74/242 (30%), Gaps = 62/242 (25%)

Query: 11  LKLPERKQNFNICS-------IPYLVLTLLQILLWTGKK-------LFLFAMYCVCGYNR 56
           L+  E ++ F+  S       IP ++L+L+    W           +     Y +    +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLV--EK 419

Query: 57  TVKIRARYYKLIELEEKPSGSNVY-------DTFTIPEVDTDEEEKPDWWSLYYSS--VY 107
             K        I LE K    N Y       D + IP+    ++  P +   Y+ S   +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 108 SSGVVEKIQQIQRENE-----------ERKTIRLCKCCNIVPPKNELELVPEFEHFADVL 156
               ++ I+  +R              E+K        N                  + L
Sbjct: 480 H---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS------------ILNTL 524

Query: 157 QTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPADRDHLVTFSGKPLSNGALQESIDNE 216
           Q   F Y     +N     E  V +      F P   ++L+      L   AL    ++E
Sbjct: 525 QQLKF-YKPYICDNDPKY-ERLVNAILD---FLPKIEENLICSKYTDLLRIALMA--EDE 577

Query: 217 KV 218
            +
Sbjct: 578 AI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 64/417 (15%), Positives = 119/417 (28%), Gaps = 130/417 (31%)

Query: 10  WLKLPERKQNFNICSIPYLVLTLLQILLWTGKKLFLFAMYCVCGY-NRTVKIRARYYKLI 68
           WL       N   C+ P  VL +LQ LL+     +            R   I+A   +L+
Sbjct: 186 WL-------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 69  ELEEKPSG----SNVYDTFTIPEVD--------TDEEEKPDWWSLYYSSVYSSGVVEKIQ 116
           + +   +      NV +       +        T            +  V          
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-----------FKQVTDFLSAATTT 287

Query: 117 QIQREN-----EERKTIRLC-KCCNIVP---PKNELELVPEF-----EHFADVLQTFDFY 162
            I  ++        +   L  K  +  P   P+  L   P       E   D L T+D  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-N 346

Query: 163 YGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVT 221
           +  +  +   T+ E  +   +      PA+ R      S            +     ++ 
Sbjct: 347 WKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLS------------VFPPSAHIP 388

Query: 222 IRVYIVRAYGLHPKDKDGKCDPYIV---LKTGSVEINDRENYVTNQINPYFGRHFEIQGS 278
             + +   +     D        +V    K   VE   +E+ ++         + E++  
Sbjct: 389 TIL-LSLIWF----DVIKSDVMVVVNKLHKYSLVEKQPKESTIS-----IPSIYLELKVK 438

Query: 279 FPTDAKLTVEIKDHDSVSK------------DDYI-----------GMTEMD-------L 308
              +  L   I DH ++ K            D Y               E         L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 309 ESRFYS---RHRGSCARWTSDLEVSGSSPGEVLPGITLQSGEINSDPVRYWRSYVTD 362
           + RF     RH  +          + ++ G +L   TLQ        +++++ Y+ D
Sbjct: 499 DFRFLEQKIRHDST----------AWNASGSILN--TLQQ-------LKFYKPYICD 536

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 221 TIRVYIVRAYGLHPKD-KDGKCDPYI---VLKTGSVEINDRENYVTNQINPYFGRHFEIQ 276
            + V ++RA  L  K        PY+   +L+ G+     +       ++P + +     
Sbjct: 31  QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90

Query: 277 GSFPTDAKLTVEIK-DHDSVSKDDYIGMTEMDLES 310
            S P    L V +  D+  +    ++G+ ++ LE 
Sbjct: 91  ES-PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEE 124

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 224 VYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDA 283
           V + +A     ++K    + Y+ LK  +V+             P + + F  + +   D 
Sbjct: 9   VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTI---AVRGSQPSWEQDFMFEIN-RLDL 61

Query: 284 KLTVEIKDHDSVSKDDYIGMTEMDLESRFYS 314
            LTVE+ +   +  D  +G   + L +   S
Sbjct: 62  GLTVEVWNKGLI-WDTMVGTVWIPLRTIRQS 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.8
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.79
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.79
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.79
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.78
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.77
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.77
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.77
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.74
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.71
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.68
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.68
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.68
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.67
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.66
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.66
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.66
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.66
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.66
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.65
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.65
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.65
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.65
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.65
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.64
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.64
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.63
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.63
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.63
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.63
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.63
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.63
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.63
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.62
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.59
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.58
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.58
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.54
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.5
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.39
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.39
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.37
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.2
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.17
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.14
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.14
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.08
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.38
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.21
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	90.67
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	81.75
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	81.49
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.54

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.82  E-value=2.1e-19  Score=154.86  Aligned_cols=129  Identities=19%  Similarity=0.314  Sum_probs=96.2

Q ss_pred             CCCcceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE----EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEE
Q psy4890         213 IDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV----EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVE  288 (364)
Q Consensus       213 p~~~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~----~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~  288 (364)
                      |...+....|+|+|++|++|++.|.+|.+||||++.++..    ....+|+++.+++||+||+.|.|.+. +....|.|+
T Consensus        13 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-~~~~~l~~~   91 (153)
T 3b7y_A           13 LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH-PQQHRLLFE   91 (153)
T ss_dssp             SSCCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEEC-TTTCEEEEE
T ss_pred             ccCCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEec-CCCCEEEEE
Confidence            4556677889999999999999999999999999998631    23446677899999999999999987 456789999


Q ss_pred             EEecCCCCCCceeEEEEeeccccccccCC-------CccccccccccCCCCCceEEEEEEEEe
Q psy4890         289 IKDHDSVSKDDYIGMTEMDLESRFYSRHR-------GSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       289 V~D~D~iskDD~IGet~IdLenr~~s~~~-------a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      |||+|.+++|++||++.|+|.++......       .|+.|.+..  ..+...|+|+++++|.
T Consensus        92 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           92 VFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS--HKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             EEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS--TTCCCCSEEEEEEEEC
T ss_pred             EEECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc--CCCCcceEEEEEEEEe
Confidence            99999999999999999999987654321       344442211  1235689999999984

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.80  E-value=5.7e-19  Score=148.78  Aligned_cols=123  Identities=14%  Similarity=0.227  Sum_probs=94.2

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCC-
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSK-  297 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~isk-  297 (364)
                      ...|+|+|++|++|+++|.+|.+||||++.++......+|.++.+++||+||+.|.|.+..+.  .|.|+|||+|.+++ 
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD--SITISVWNHKKIHKK   81 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC--CEEEEEEEGGGTTSS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC--EEEEEEEECCCCCCC
Confidence            456889999999999999999999999999975333445677899999999999999987543  49999999999876 


Q ss_pred             --CceeEEEEeeccccccccC--CCccccccccccCCCCCceEEEEEEEE
Q psy4890         298 --DDYIGMTEMDLESRFYSRH--RGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       298 --DD~IGet~IdLenr~~s~~--~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                        |++||++.|+|+++.....  ..+..|...........+|+|.++|+.
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence              8999999999987632211  233444221111122469999999986

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.79  E-value=1.7e-18  Score=148.46  Aligned_cols=120  Identities=21%  Similarity=0.383  Sum_probs=98.5

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC---
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV---  295 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i---  295 (364)
                      ...|+|+|++|++|++.|.+|.+||||++.++++..+|  .++.+++||.||+.|.|.+..+ ...|.|+|||+|..   
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT--~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRT--KTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEEC--CCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHH
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEEC--CccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCccc
Confidence            46789999999999999999999999999999876655  5688999999999999999754 47899999999986   


Q ss_pred             --------CCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         296 --------SKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       296 --------skDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                              ++|++||++.|+|.+.. .....|..|.+.  ...+..+|+|+++|+|+
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l~-~~~~~w~~L~~~--~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTLS-GEMDVWYNLDKR--TDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGCC-SEEEEEEECBCS--STTCCCCCEEEEEEEEE
T ss_pred             cccccccCCCCccEEEEEEEHHHCc-CCCCEEEEcccC--CCCCCCceEEEEEEEEE
Confidence                    89999999999999872 233345555322  11234789999999984

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.79  E-value=5.6e-19  Score=149.96  Aligned_cols=120  Identities=18%  Similarity=0.291  Sum_probs=95.5

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCC-----------CCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEE
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGK-----------CDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLT  286 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~-----------sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~  286 (364)
                      ....|+|+|++|++|++.|.+|+           +||||++.+++... .+|.++.+++||+|||.|.|.+..+  ..|.
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~-~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~   80 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI-GQTATKQKTNSPAWHDEFVTDVCNG--RKIE   80 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE-EECCCCSSCSSCEEEEEEEEEEEEE--CEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEe-eeeeEECCCcCCccCCEEEEEecCC--CEEE
Confidence            34678999999999999886554           99999999987653 2456788999999999999998654  8899


Q ss_pred             EEEEecCCCCCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890         287 VEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       287 V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      |+|||+|.+++||+||++.|+|.++...... ..   ..++.+  ..+|+|+++|+|+++
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~-~~---~~w~~L--~~~G~i~l~l~~~~~  134 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSR-HF---EDWIDL--EPEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-EE---EEEEEC--BSSCEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhcccCCC-Cc---cEEEEc--CCCeEEEEEEEEEec
Confidence            9999999999999999999999887643211 11   223332  248999999999765

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1e-18  Score=148.17  Aligned_cols=125  Identities=16%  Similarity=0.163  Sum_probs=98.2

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEecCC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKDHDS  294 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D~D~  294 (364)
                      ....|+|+|++|++|++.|. |.+||||++.+++++.+|  .++.+++||+||+.|.|.+..+   ....|.|+|||+|.
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT--~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKT--KKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEEC--CCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEe--eeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            34578999999999999998 999999999999876555  5688999999999999998654   46899999999999


Q ss_pred             CCCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEee
Q psy4890         295 VSKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq~  345 (364)
                      +++|++||++.|+|.++.... ...|..|.+..-......+|+|+++++|..
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p  133 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP  133 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence            999999999999999875432 123444212111112245799999999954

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=2.1e-18  Score=145.55  Aligned_cols=122  Identities=20%  Similarity=0.274  Sum_probs=99.3

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCC
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVS  296 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~is  296 (364)
                      +....|+|+|++|++|++.|..|.+||||++.+++++.+|  .++.+++||+||+.|.|.+.. ....|.|+|||+|.++
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT--~~~~~t~nP~wne~f~f~~~~-~~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQT--HTVYKNLNPEWNKVFTFPIKD-IHDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEEC--CCCSSCSSCCCCEEEEEEESC-TTCEEEEEEEEEETTE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEe--eeecCCCCCccccEEEEEecC-CCCEEEEEEEECCCCC
Confidence            3557789999999999999999999999999999876654  568899999999999999874 4578999999999999


Q ss_pred             CCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         297 KDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       297 kDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      +|++||++.|+|.+... ....|..|...  ...+..+|+|+++++|-
T Consensus        87 ~~~~lG~~~i~l~~l~~-~~~~w~~L~~~--~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRD-GQPNCYVLKNK--DLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             EEEECCBCEEEGGGCCS-SCCEECCCBCS--CTTSCCSSEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccC-CCceEEEeecC--CCCCccceEEEEEEEEE
Confidence            99999999999998743 22334444221  11345789999999883

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.77  E-value=1.4e-18  Score=146.65  Aligned_cols=121  Identities=22%  Similarity=0.290  Sum_probs=100.1

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeec-CCCCCccceEEEEEeecCCCCeEEEEEEecCCCC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT-NQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVS  296 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~-~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~is  296 (364)
                      ....|+|+|++|++|++.|.+|.+||||++.++++..+|  .++. +++||+||+.|.|.+.. ....|.|+|||+|.++
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT--~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEEC--CCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCT
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcccee--EeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCC
Confidence            456789999999999999999999999999998876554  5577 89999999999999874 6789999999999999


Q ss_pred             CCceeEEEEeecccccccc--CCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890         297 KDDYIGMTEMDLESRFYSR--HRGSCARWTSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       297 kDD~IGet~IdLenr~~s~--~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      +|++||++.|+|.++....  ...|..|.     ..+...|+|+++|+|...
T Consensus        85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-----~~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFVEGSIPPTAYNVV-----KDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEE-----ETTEEEEEEEEEEEEEEC
T ss_pred             CCceEEEEEEEHHHhccCCCCCcEEEEee-----cCCccCEEEEEEEEEEeC
Confidence            9999999999998874321  12344441     246689999999999544

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.77  E-value=2.8e-18  Score=151.86  Aligned_cols=125  Identities=18%  Similarity=0.277  Sum_probs=92.1

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE----EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV----EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHD  293 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~----~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D  293 (364)
                      ....|+|+|++|++|++.|.+|.+||||++.+++.    ....+|.++.+++||+||+.|.|.+. +....|.|+|||+|
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~-~~~~~L~~~V~d~d   84 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL-PQRHRILFEVFDEN   84 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEEC-TTTCEEEEEEEECC
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEc-CCCCEEEEEEEECC
Confidence            34678999999999999999999999999998641    13445677899999999999999987 55678999999999


Q ss_pred             CCCCCceeEEEEeeccccccccCC-------CccccccccccCCCCCceEEEEEEEEee
Q psy4890         294 SVSKDDYIGMTEMDLESRFYSRHR-------GSCARWTSDLEVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr~~s~~~-------a~~gL~p~~y~~~G~~~GEIllSL~fq~  345 (364)
                      .+++|++||++.|+|.++......       .|+.|.+.  ...+..+|+|+++|+|..
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~--~~~~~~~G~l~l~l~~~p  141 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR--SHKSRVKGYLRLKMTYLP  141 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC------CCCCEEEECBCS--STTCCCCSEEEEEEEECC
T ss_pred             CCCCCcEEEEEEEEHHHccccCCcccccccccEEEcccc--CCCCccCEEEEEEEEEEe
Confidence            999999999999999988654222       24444221  113456899999999933

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.77  E-value=3.1e-18  Score=151.09  Aligned_cols=120  Identities=18%  Similarity=0.300  Sum_probs=95.0

Q ss_pred             ceeEEEEEEEEEecCCCCCCC----------CCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEE
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDK----------DGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLT  286 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~----------~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~  286 (364)
                      .....|+|+|++|++|+++|.          +|.+||||++.++++.. .+|+++++|+||+|||.|.|.+..  ...|.
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~-~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~  102 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRV-GQTSTKQKTNKPTYNEEFCANVTD--GGHLE  102 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEE-EECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEee-EEeeecCCCCCCccCcEEEEEcCC--CCEEE
Confidence            456789999999999999983          36799999999988653 244668999999999999999863  46899


Q ss_pred             EEEEecCCCCCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         287 VEIKDHDSVSKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       287 V~V~D~D~iskDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      |+|||+|.+++||+||++.|+|+++.... .+..  . ..||.++  .+|+|++.++++
T Consensus       103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~--~-~~W~~L~--~~G~i~l~l~~~  156 (157)
T 2fk9_A          103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDT--F-EGWVDLE--PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSE--E-EEEEECB--SSCEEEEEEEEC
T ss_pred             EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCc--c-cEEEECC--CCcEEEEEEEEE
Confidence            99999999999999999999999875420 1111  1 3344443  389999999985

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=7.6e-18  Score=140.15  Aligned_cols=93  Identities=23%  Similarity=0.319  Sum_probs=79.7

Q ss_pred             EEEEEEEEEecCCCCC---CCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPK---DKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~---D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i  295 (364)
                      ..|+|+|++|++|+++   |.+|.+||||++.+++. ....+|+++.+++||+||+.|.|.+..+....|.|+|||+|.+
T Consensus         3 ~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~   82 (126)
T 1rlw_A            3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV   82 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred             cEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCC
Confidence            4688999999999984   66799999999999852 2333556789999999999999999777888999999999988


Q ss_pred             CCCceeEEEEeecccccc
Q psy4890         296 SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       296 skDD~IGet~IdLenr~~  313 (364)
                       +|++||++.|+|.++..
T Consensus        83 -~~~~iG~~~i~l~~l~~   99 (126)
T 1rlw_A           83 -MDETLGTATFTVSSMKV   99 (126)
T ss_dssp             -CCEEEEEEEEEGGGSCT
T ss_pred             -CCceeEEEEEEHHHccC
Confidence             59999999999988753

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.71  E-value=2.9e-17  Score=146.32  Aligned_cols=119  Identities=12%  Similarity=0.147  Sum_probs=91.1

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD  298 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskD  298 (364)
                      ...|+|+|++|++|++.+..+.+||||++.++++..+|  .++.+++||+||+.|.|.+.  ....|.|+|||+|.+++|
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT--~v~~~tlnP~Wne~f~f~v~--~~~~L~~~V~D~d~~~~d  110 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKT--EKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQTLKSD  110 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEEC--CCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCSSSCC
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEc--cccCCCCCCeECCEEEEEeC--CCCEEEEEEEECCCCCCC
Confidence            45689999999999954445569999999998855544  66889999999999999884  388999999999999999


Q ss_pred             ceeEEEEeeccccccccCC--C----ccccccccccCCCCCceEEEEEEEE
Q psy4890         299 DYIGMTEMDLESRFYSRHR--G----SCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       299 D~IGet~IdLenr~~s~~~--a----~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      ++||++.|+|.++......  .    |..|...  ......+|+|.++|++
T Consensus       111 d~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~--~~~~~~~G~L~v~l~~  159 (173)
T 2nq3_A          111 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD--KEPTETIGDLSICLDG  159 (173)
T ss_dssp             EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES--SCTTSEEEEEEEEEES
T ss_pred             ceEEEEEEEHHHhcccCCCCcceeEEEEECccC--CCCCcccEEEEEEEee
Confidence            9999999999887542111  1    2222111  1123468999999998

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.68  E-value=1.2e-17  Score=146.23  Aligned_cols=94  Identities=15%  Similarity=0.161  Sum_probs=81.0

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---E-EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---V-EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH  292 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~-~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~  292 (364)
                      ...|+|.|++|+||+++|.+|.+||||++++.+   . ..+.+|+++++|+||+|||+|.|.+...  ....|.|+|||+
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~  121 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT  121 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence            346789999999999999999999999999864   2 2245667889999999999999997542  267899999999


Q ss_pred             CCCCCCceeEEEEeeccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRF  312 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~  312 (364)
                      |.+++|++||++.|+|.+..
T Consensus       122 d~~~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A          122 DRSHLEECLGGAQISLAEVC  141 (155)
T ss_dssp             CTTSCEEEEEEEEEECTTSC
T ss_pred             CCCCCCcEEEEEEEEHHHcc
Confidence            99999999999999999874

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.68  E-value=1.8e-16  Score=134.94  Aligned_cols=117  Identities=19%  Similarity=0.207  Sum_probs=84.1

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      ..|+|+|++|++|+.   +|.+||||+++..  ..++++ ...+++||+|||.|.|.+.. .+..|.|+|||+| +++||
T Consensus         5 ~~L~V~V~~A~~l~~---~g~~DPYv~v~~~--~~kt~~-~~~~t~nP~WnE~f~f~v~~-~~~~L~~~V~D~d-~~~dd   76 (131)
T 2cjt_A            5 SLLCVGVKKAKFDGA---QEKFNTYVTLKVQ--NVKSTT-IAVRGSQPSWEQDFMFEINR-LDLGLTVEVWNKG-LIWDT   76 (131)
T ss_dssp             EEEEEEEEEEECSSC---GGGCEEEEEEEET--TEEEEC-CCEESSSCEEEEEEEEEECC-CSSEEEEEEEECC-SSCEE
T ss_pred             eEEEEEEEEeECCCC---CCCcCeEEEEEec--CEEEeE-ecCCCCCceECCEEEEEEeC-CCCeEEEEEEECC-CCCCC
Confidence            468899999998852   6899999999922  222322 23479999999999999874 4567999999999 88999


Q ss_pred             eeEEEEeeccccccccCCCccccccccccC---CCCCceE-------EEEEEEEe
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLEV---SGSSPGE-------VLPGITLQ  344 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~---~G~~~GE-------IllSL~fq  344 (364)
                      +||++.|+|.++.......+..+.|.+|.+   +|..+|+       +++.+.|+
T Consensus        77 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~~  131 (131)
T 2cjt_A           77 MVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  131 (131)
T ss_dssp             EEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred             eEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEeC
Confidence            999999999987654333444555666653   4555555       88888774

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.68  E-value=1.9e-16  Score=134.41  Aligned_cols=95  Identities=14%  Similarity=0.183  Sum_probs=79.6

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEE-eecC--CCCeEEEEEEe
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQ-GSFP--TDAKLTVEIKD  291 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~-v~~p--~~~~L~V~V~D  291 (364)
                      ....|+|+|++|+||++ +.+|.+||||++.+..   .....+|+++++++||+|||.|.|. +...  ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            34568899999999997 7789999999999832   2233456778999999999999999 6532  46899999999


Q ss_pred             cCCCCCCceeEEEEeecccccc
Q psy4890         292 HDSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLenr~~  313 (364)
                      +|.+++|++||++.|+|.++..
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~  118 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNL  118 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCT
T ss_pred             CCCCCCCcEEEEEEEEhhhccC
Confidence            9999999999999999998754

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.67  E-value=1.4e-16  Score=136.91  Aligned_cols=94  Identities=28%  Similarity=0.416  Sum_probs=80.5

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D~D~i  295 (364)
                      ..|+|+|++|++|++.|.+|.+||||++++..   .....+|.++.+++||+||++|.|.+..+ ....|.|+|||+|.+
T Consensus        31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~  110 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  110 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCC
Confidence            35889999999999999999999999999863   12334557789999999999999998643 256899999999999


Q ss_pred             CCCceeEEEEeecccccc
Q psy4890         296 SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       296 skDD~IGet~IdLenr~~  313 (364)
                      ++|++||++.|+|.++..
T Consensus       111 ~~~~~iG~~~i~l~~l~~  128 (149)
T 1a25_A          111 SRNDFMGSLSFGISELQK  128 (149)
T ss_dssp             SCCEEEEEEEEEHHHHTT
T ss_pred             CCCCEEEEEEEEHHHhCc
Confidence            999999999999998754

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.66  E-value=1.1e-16  Score=133.72  Aligned_cols=96  Identities=17%  Similarity=0.307  Sum_probs=75.3

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEec
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKDH  292 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D~  292 (364)
                      ...|+|+|++|++|++.|.+|.+||||++.+..   .....+|.++++++||+||+.|.|.+..+   ....|.|+|||+
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~   96 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   96 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence            356789999999999999999999999999832   12334556789999999999999985322   367999999999


Q ss_pred             CCCCC--CceeEEEEeeccccccc
Q psy4890         293 DSVSK--DDYIGMTEMDLESRFYS  314 (364)
Q Consensus       293 D~isk--DD~IGet~IdLenr~~s  314 (364)
                      |.+++  |++||++.|+|.+....
T Consensus        97 d~~~~~~~~~lG~~~i~l~~l~~~  120 (129)
T 2bwq_A           97 ARVREEESEFLGEILIELETALLD  120 (129)
T ss_dssp             -------CEEEEEEEEEGGGCCCS
T ss_pred             CcCcCcCCceeEEEEEEccccCCC
Confidence            99987  99999999999987643

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.66  E-value=3.2e-16  Score=147.59  Aligned_cols=125  Identities=18%  Similarity=0.266  Sum_probs=97.2

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSV  295 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~i  295 (364)
                      ...|+|+|++|++|+++|.+|.+||||++.+++. ....+|+++.+++||+||+.|.|.+..+  ....|.|+|||+|.+
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~   97 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF   97 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence            3567899999999999999999999999998642 2233457788999999999999998643  357999999999999


Q ss_pred             CCCceeEEEEeecccccccc-CCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         296 SKDDYIGMTEMDLESRFYSR-HRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s~-~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      ++|++||++.|+|.++..+. ...|..|.+.. .......|+|.+++.|.
T Consensus        98 ~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~~~G~i~l~l~~~  146 (284)
T 2r83_A           98 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE-KEEQEKLGDICFSLRYV  146 (284)
T ss_dssp             SCCCEEEEEEEEGGGCCCSSCEEEEEECBCCS-SCCCCCCCEEEEEEEEE
T ss_pred             CCCceeEEEEEcchhcccCCcceeEEEeeccc-cccccccccEEEEEEec
Confidence            99999999999999875432 23344452211 11224689999999984

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.66  E-value=7.6e-17  Score=138.47  Aligned_cols=105  Identities=11%  Similarity=0.213  Sum_probs=84.8

Q ss_pred             eEEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEec
Q psy4890         219 NVTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDH  292 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~  292 (364)
                      ...|+|+|++|++|++.| .+|.+||||++.+...   ....+|.++++++||+||+.|.|.+...  ....|.|+|||+
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            345789999999999998 5899999999998632   1244567789999999999999997643  256799999999


Q ss_pred             CCCCCCceeEEEEeeccccccc-cCCCccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRFYS-RHRGSCARW  323 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~s-~~~a~~gL~  323 (364)
                      |.+++|++||++.|+|.+...+ ....|..|.
T Consensus       102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  133 (148)
T 3fdw_A          102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLH  133 (148)
T ss_dssp             CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECB
T ss_pred             CCCcCCcEEEEEEEEcccccccCCccceEECc
Confidence            9999999999999999887654 333455553

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.66  E-value=1.8e-16  Score=136.81  Aligned_cols=95  Identities=23%  Similarity=0.347  Sum_probs=80.8

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSV  295 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~i  295 (364)
                      ...|+|+|++|++|++.|.+|.+||||++.+.. .....+|.++.+++||+||+.|.|.+..+  ....|.|+|||+|.+
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  120 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  120 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence            346789999999999999999999999999842 22334567789999999999999987543  468999999999999


Q ss_pred             CCCceeEEEEeecccccc
Q psy4890         296 SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       296 skDD~IGet~IdLenr~~  313 (364)
                      ++|++||++.|+|.++..
T Consensus       121 ~~~~~iG~~~i~l~~l~~  138 (152)
T 1rsy_A          121 SKHDIIGEFKVPMNTVDF  138 (152)
T ss_dssp             SCCEEEEEEEEEGGGCCC
T ss_pred             CCCcEEEEEEEEchhccC
Confidence            999999999999998744

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=2.4e-16  Score=134.13  Aligned_cols=96  Identities=23%  Similarity=0.309  Sum_probs=80.0

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC---CCCeEEEEEEecCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP---TDAKLTVEIKDHDS  294 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p---~~~~L~V~V~D~D~  294 (364)
                      ...|+|+|++|++|++.|.+|.+||||++.+.+ .....+|+++.+++||+||+.|.|.+..+   ....|.|+|||+|.
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~  104 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR  104 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence            345789999999999999999999999999842 22234556789999999999999985311   36789999999999


Q ss_pred             CCCCceeEEEEeeccccccc
Q psy4890         295 VSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s  314 (364)
                      +++|++||++.|+|.++..+
T Consensus       105 ~~~~~~iG~~~i~l~~l~~~  124 (141)
T 2d8k_A          105 FSRNDPIGEVSIPLNKVDLT  124 (141)
T ss_dssp             SSSCEEEEEEEEETTTSCTT
T ss_pred             CCCCcEEEEEEEEhhhhcCC
Confidence            99999999999999987543

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.65  E-value=1.7e-16  Score=135.19  Aligned_cols=95  Identities=23%  Similarity=0.347  Sum_probs=80.6

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSV  295 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~i  295 (364)
                      ...|+|+|++|++|++.|.+|.+||||++.+.. .....+|.++.+++||+||+.|.|.+..+  ....|.|+|||+|.+
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  112 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence            345789999999999999999999999999832 22344557789999999999999998643  358999999999999


Q ss_pred             CCCceeEEEEeecccccc
Q psy4890         296 SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       296 skDD~IGet~IdLenr~~  313 (364)
                      ++|++||++.|+|.++..
T Consensus       113 ~~~~~iG~~~i~l~~l~~  130 (143)
T 3f04_A          113 SKHDIIGEFKVPMNTVDF  130 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCT
T ss_pred             CCCceEEEEEEEHHHccC
Confidence            999999999999998754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.65  E-value=8.5e-17  Score=136.64  Aligned_cols=93  Identities=26%  Similarity=0.420  Sum_probs=79.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCEE------------eeeeeeeecCCCCCccceEEEEE-eecC--CCCeE
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE------------INDRENYVTNQINPYFGRHFEIQ-GSFP--TDAKL  285 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~------------~~tkt~~i~~tlnP~wne~Fef~-v~~p--~~~~L  285 (364)
                      .|+|+|++|++|+++|.+|.+||||++.+++..            ...+|.++.+++||+||+.|.|. +...  ....|
T Consensus        19 ~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l   98 (142)
T 1rh8_A           19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL   98 (142)
T ss_dssp             EEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEE
T ss_pred             EEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEE
Confidence            578999999999999999999999999997532            23466778899999999999997 5432  46799


Q ss_pred             EEEEEecCCCCCCceeEEEEeecccccc
Q psy4890         286 TVEIKDHDSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       286 ~V~V~D~D~iskDD~IGet~IdLenr~~  313 (364)
                      .|+|||+|.+++|++||++.|+|.++..
T Consensus        99 ~i~V~d~d~~~~~~~lG~~~i~l~~l~~  126 (142)
T 1rh8_A           99 EVTVWDYDRFSSNDFLGEVLIDLSSTSH  126 (142)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEETTSCGG
T ss_pred             EEEEEECCCCCCCceEEEEEEecccccc
Confidence            9999999999999999999999998754

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=1.1e-16  Score=135.34  Aligned_cols=103  Identities=16%  Similarity=0.250  Sum_probs=82.3

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEe-ecC--CCCeEEEEEEecC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQG-SFP--TDAKLTVEIKDHD  293 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v-~~p--~~~~L~V~V~D~D  293 (364)
                      ..|+|+|++|++|+++|.+|.+||||++.+..   .....+|.++.+++||+||+.|.|.+ ...  ....|.|+|||+|
T Consensus        21 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  100 (141)
T 1v27_A           21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA  100 (141)
T ss_dssp             TEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBC
T ss_pred             CEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECC
Confidence            46789999999999999999999999999832   12334557789999999999999984 322  3589999999999


Q ss_pred             CCCC--CceeEEEEeeccccccccCCCcccc
Q psy4890         294 SVSK--DDYIGMTEMDLESRFYSRHRGSCAR  322 (364)
Q Consensus       294 ~isk--DD~IGet~IdLenr~~s~~~a~~gL  322 (364)
                      .+++  |++||++.|+|.++.......|..|
T Consensus       101 ~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L  131 (141)
T 1v27_A          101 RVREEESEFLGEILIELETALLDDEPHWYKL  131 (141)
T ss_dssp             SSSSCCBCCCEEEEEEGGGCCCSSEEEEEEC
T ss_pred             CCcCCCCceEEEEEEEccccCCCCCCceEEC
Confidence            9987  9999999999998754332334433

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.65  E-value=9e-16  Score=134.34  Aligned_cols=92  Identities=22%  Similarity=0.356  Sum_probs=79.6

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~  294 (364)
                      ..|+|+|++|++|++.|.+|.+||||++.+++.   ....+|.++.+++||+||++|.|.+..+  ....|.|+|||+|.
T Consensus        37 ~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  116 (166)
T 2cm5_A           37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI  116 (166)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC
Confidence            357899999999999999999999999998652   2344667789999999999999998643  36799999999999


Q ss_pred             CCCCceeEEEEeecccc
Q psy4890         295 VSKDDYIGMTEMDLESR  311 (364)
Q Consensus       295 iskDD~IGet~IdLenr  311 (364)
                      +++|++||++.|+|.+.
T Consensus       117 ~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          117 GKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             SSCCEEEEEEEEETTCC
T ss_pred             CCCCcEEEeEEEecccC
Confidence            99999999999999864

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=4.8e-16  Score=132.18  Aligned_cols=102  Identities=19%  Similarity=0.263  Sum_probs=80.7

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~  294 (364)
                      ..|+|+|++|++|+++|.+| +||||++.+...   ....+|.++.+++||+||+.|.|.+...  ....|.|+|||+|.
T Consensus        24 ~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  102 (142)
T 2dmg_A           24 NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG  102 (142)
T ss_dssp             TEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC
T ss_pred             CEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC
Confidence            45789999999999999999 999999998431   1344567789999999999999997532  24689999999998


Q ss_pred             CCC--CceeEEEEeeccccccc-cCCCcccc
Q psy4890         295 VSK--DDYIGMTEMDLESRFYS-RHRGSCAR  322 (364)
Q Consensus       295 isk--DD~IGet~IdLenr~~s-~~~a~~gL  322 (364)
                      +++  |++||++.|+|.+...+ ....|..|
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L  133 (142)
T 2dmg_A          103 FLSKDKGLLGKVLVALASEELAKGWTQWYDL  133 (142)
T ss_dssp             SSCCSCCCCEEEEEECCCSTTTTCBCCBCCC
T ss_pred             ccccCCcEEEEEEEecccccccccccceeec
Confidence            863  57999999999887553 23344444

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=1e-15  Score=155.34  Aligned_cols=123  Identities=22%  Similarity=0.278  Sum_probs=101.3

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSK  297 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~isk  297 (364)
                      ....|+|+|++|++|++.|.+|.+||||++.+++...+|  .++.+++||+||+.|.|.+..+....|.|+|||+|.+++
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T--~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~  462 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTT--RTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSP  462 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEEC--CCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSS
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccC--CccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCC
Confidence            345789999999999999999999999999998876655  568999999999999999987777889999999999999


Q ss_pred             CceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         298 DDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       298 DD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      ||+||++.++|.++.... .....+ ..++...+...|+|.+++.++
T Consensus       463 ~d~lG~~~~~l~~l~~~~-~~~~~~-~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          463 DDFLGRTEIPVAKIRTEQ-ESKGPM-TRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CCEEEEEEEEHHHHHHHH-HHHCSC-CEEEECBSSSSCEEEEEEEEE
T ss_pred             CCceEEEEEEHHHhcccc-CCCCce-eeeecCCCCCCceEEEEEEEE
Confidence            999999999998775421 101112 345555677889999998874

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.64  E-value=3.9e-16  Score=132.30  Aligned_cols=96  Identities=24%  Similarity=0.327  Sum_probs=80.2

Q ss_pred             eEEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEE-eecC--CCCeEEEEEEecC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKD-GKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQ-GSFP--TDAKLTVEIKDHD  293 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~-G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~-v~~p--~~~~L~V~V~D~D  293 (364)
                      ...|+|+|++|++|+++|.+ |.+||||++.+.+ .....+|.++.+++||+||+.|.|. +...  ....|.|+|||+|
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d  100 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence            34678999999999999985 8999999999853 2234455778899999999999996 5432  3578999999999


Q ss_pred             CCCCCceeEEEEeeccccccc
Q psy4890         294 SVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr~~s  314 (364)
                      .+++|++||++.|+|.++..+
T Consensus       101 ~~~~~~~lG~~~i~l~~l~~~  121 (138)
T 1ugk_A          101 RFSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCT
T ss_pred             CCCCCcEEEEEEEehhHccCC
Confidence            999999999999999987653

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.63  E-value=9.3e-16  Score=133.17  Aligned_cols=91  Identities=25%  Similarity=0.427  Sum_probs=78.8

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEecCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~D~  294 (364)
                      ..|+|+|++|+||++.|.+|.+||||++.++.   .....+|.++.+++||+||++|.|.+..+.  ...|.|+|||+|.
T Consensus        25 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~  104 (159)
T 1tjx_A           25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK  104 (159)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC
Confidence            35789999999999999999999999999852   233456678899999999999999986442  5689999999999


Q ss_pred             CCCCceeEEEEeeccc
Q psy4890         295 VSKDDYIGMTEMDLES  310 (364)
Q Consensus       295 iskDD~IGet~IdLen  310 (364)
                      +++|++||++.|+|..
T Consensus       105 ~~~~~~iG~~~i~l~~  120 (159)
T 1tjx_A          105 IGKNDAIGKVFVGYNS  120 (159)
T ss_dssp             SSCCEEEEEEEEETTC
T ss_pred             CCCCceEEEEEECCCC
Confidence            9999999999999985

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.63  E-value=1.4e-15  Score=129.61  Aligned_cols=91  Identities=16%  Similarity=0.261  Sum_probs=77.2

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--SVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~i  295 (364)
                      ..|+|+|++|+   ++|.+|.+||||++.+.  ......+|+++++++||+|||+|.|.+...  ....|.|+|||+|.+
T Consensus        26 ~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~  102 (138)
T 1wfm_A           26 AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCC
Confidence            45789999999   47888999999999984  234445677899999999999999997643  257899999999999


Q ss_pred             CCCceeEEEEeecccccc
Q psy4890         296 SKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       296 skDD~IGet~IdLenr~~  313 (364)
                      ++|++||++.|+|.++..
T Consensus       103 ~~dd~lG~~~i~l~~l~~  120 (138)
T 1wfm_A          103 SRHSVAGELRLGLDGTSV  120 (138)
T ss_dssp             CTTSCSEEEEEESSSSSS
T ss_pred             CCCcEEEEEEEEcccccC
Confidence            999999999999998753

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.63  E-value=4.8e-16  Score=137.37  Aligned_cols=102  Identities=18%  Similarity=0.238  Sum_probs=83.2

Q ss_pred             EEEEEEEEEecCCCCCCC-CCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEE-ecCC
Q psy4890         220 VTIRVYIVRAYGLHPKDK-DGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIK-DHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~-~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~-D~D~  294 (364)
                      ..|+|+|++|++|+++|. +|.+||||++.+...   ....+|.++.+++||+|||+|.|.+. +....|.|+|| |+|.
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-~~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES-PQGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSC-CTTEEEEEEEEEECST
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEec-CCCCEEEEEEEEcCCC
Confidence            457899999999999996 799999999998531   23446678899999999999999985 45789999999 9999


Q ss_pred             CCCCceeEEEEeeccccccc-cCCCcccc
Q psy4890         295 VSKDDYIGMTEMDLESRFYS-RHRGSCAR  322 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s-~~~a~~gL  322 (364)
                      +++|++||++.|+|.++..+ ....|..|
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~~~~~~W~~L  137 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLSSMVIGWYKL  137 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTTSCEEEEEEC
T ss_pred             CCCCCEEEEEEEEHHHcccCCCcceeEEC
Confidence            99999999999999987643 23345555

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.63  E-value=5.1e-16  Score=130.58  Aligned_cols=93  Identities=23%  Similarity=0.357  Sum_probs=79.8

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~  292 (364)
                      ....|+|+|++|++|++.|.+|.+||||++.+++   .....+|.++.+++||+||++|.|.+..+.  ...|.|+|||+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~   93 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDK   93 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEEC
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEEC
Confidence            3456889999999999999999999999999853   234556678899999999999999976433  36899999999


Q ss_pred             CCCCCCceeEEEEeeccc
Q psy4890         293 DSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       293 D~iskDD~IGet~IdLen  310 (364)
                      |.+++|++||++.|+|.+
T Consensus        94 ~~~~~~~~lG~~~i~l~~  111 (138)
T 3n5a_A           94 DKLSRNDVIGKIYLSWKS  111 (138)
T ss_dssp             CSSSCCEEEEEEEESSSS
T ss_pred             CCCCCCcEEEEEEEcccc
Confidence            999999999999999986

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.63  E-value=3.8e-16  Score=132.83  Aligned_cols=95  Identities=25%  Similarity=0.412  Sum_probs=79.5

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEE-eecC--CCCeEEEEEEec
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQ-GSFP--TDAKLTVEIKDH  292 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~-v~~p--~~~~L~V~V~D~  292 (364)
                      ...|+|+|++|++|++.+.+|.+||||++.+++   .....+|+++.+++||+||+.|.|. +...  ....|.|+|||+
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  107 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE  107 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence            346789999999999999999999999999864   1233455778899999999999998 4321  147899999999


Q ss_pred             CCCCCCceeEEEEeecccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~  313 (364)
                      |.+++|++||++.|+|.++..
T Consensus       108 d~~~~d~~iG~~~i~l~~l~~  128 (142)
T 2chd_A          108 DKFGHNEFIGETRFSLKKLKA  128 (142)
T ss_dssp             CTTSCEEEEEEEEEEGGGCCT
T ss_pred             CCCCCCcEEEEEEEEHHHcCC
Confidence            999999999999999998754

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.63  E-value=8.6e-16  Score=132.38  Aligned_cols=92  Identities=17%  Similarity=0.261  Sum_probs=73.5

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CEE-eeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEecC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--SVE-INDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDHD  293 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~~~-~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~D  293 (364)
                      ...|+|+|++|++|++.|.+|.+||||++.+.  +.. ...+|.++.+++||+||++|.|.+..+.  ...|.|+|||+|
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d  108 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE  108 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence            34678999999999999999999999999983  332 3456778899999999999999986543  468999999999


Q ss_pred             CCCCCceeEEEEeeccc
Q psy4890         294 SVSKDDYIGMTEMDLES  310 (364)
Q Consensus       294 ~iskDD~IGet~IdLen  310 (364)
                      .+++|++||++.|+|.+
T Consensus       109 ~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          109 RGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             TTSCCEEEEEEEESTTC
T ss_pred             CCCCCcEEEEEEECCCC
Confidence            99999999999999977

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.63  E-value=1.7e-15  Score=134.39  Aligned_cols=120  Identities=18%  Similarity=0.167  Sum_probs=87.9

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      ..|+|+|++|++++   .+|.+||||+++.  +..++++ ...+++||+|||.|.|.+.. .+..|.|+|||+| +++||
T Consensus        14 ~~L~V~V~~A~~l~---~~g~~DPYV~v~~--~~~kt~~-~~~~t~nP~WnE~f~f~v~~-~~~~L~~~V~D~d-~~~dd   85 (167)
T 2cjs_A           14 SLLCVGVKKAKFDG---AQEKFNTYVTLKV--QNVESTT-IAVRGSQPSWEQDFMFEINR-LDLGLTVEVWNKG-LIWDT   85 (167)
T ss_dssp             CEEEEEEEEEECSS---CGGGCEEEEEEEE--TTEEEEC-CCEESSSCEEEEEEEEECCC-TTSEEEEEEEECC-SSCCE
T ss_pred             EEEEEEEEEEECCC---CCCCCCeEEEEEe--cceEEEE-ecCCCCCCCCCCEEEEEeeC-CCCEEEEEEEECC-CCCCc
Confidence            56889999999884   3689999999992  2233322 22469999999999999974 4567999999999 88999


Q ss_pred             eeEEEEeeccccccccCCCcccccccccc---CCCC-------CceEEEEEEEEeecc
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLE---VSGS-------SPGEVLPGITLQSGE  347 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~---~~G~-------~~GEIllSL~fq~g~  347 (364)
                      +||++.|+|.++.......+..+.+.+|.   .+|.       ..|.|++.++++.++
T Consensus        86 ~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~~  143 (167)
T 2cjs_A           86 MVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPL  143 (167)
T ss_dssp             EEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCC
T ss_pred             eEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecCC
Confidence            99999999998754332233344445554   2343       345588889987664

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.62  E-value=5.4e-16  Score=134.15  Aligned_cols=96  Identities=22%  Similarity=0.360  Sum_probs=79.6

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEe
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKD  291 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D  291 (364)
                      .+....|+|+|++|++|++.| +|.+||||++.+..   .....+|.++++++||+||++|.|.+... ....|.|+|||
T Consensus        23 ~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d  101 (153)
T 3fbk_A           23 DAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWN  101 (153)
T ss_dssp             EESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEE
T ss_pred             ECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEe
Confidence            345567899999999999999 69999999999842   22344567789999999999999998432 23569999999


Q ss_pred             cCCCCC-CceeEEEEeeccccc
Q psy4890         292 HDSVSK-DDYIGMTEMDLESRF  312 (364)
Q Consensus       292 ~D~isk-DD~IGet~IdLenr~  312 (364)
                      +|.+++ |++||++.|+|.++.
T Consensus       102 ~d~~~~~d~~lG~~~i~l~~l~  123 (153)
T 3fbk_A          102 RASQSRQSGLIGCMSFGVKSLL  123 (153)
T ss_dssp             CCSSGGGCEEEEEEEEEHHHHT
T ss_pred             CCCCCCCCcEEEEEEEEHHHhc
Confidence            999887 999999999998875

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.59  E-value=6.8e-15  Score=140.26  Aligned_cols=124  Identities=21%  Similarity=0.265  Sum_probs=93.0

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CEEeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG---SVEINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg---~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~  292 (364)
                      ....|+|+|++|++|+++|.+|.+||||++.+.   .+..  +|.++.+++||+||++|.|.+..+.  ...|.|+|||+
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~--kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~   95 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF--QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDF   95 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCE--ECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeE--eCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEc
Confidence            345688999999999999999999999999983   3333  4567899999999999999986443  56899999999


Q ss_pred             CCCCCCceeEEEEee-cccccc-c-cCCCccccccccccCCCCCceEEEEEEEEee
Q psy4890         293 DSVSKDDYIGMTEMD-LESRFY-S-RHRGSCARWTSDLEVSGSSPGEVLPGITLQS  345 (364)
Q Consensus       293 D~iskDD~IGet~Id-Lenr~~-s-~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~  345 (364)
                      |.+++|++||++.|+ |.+... . ....|..|.+.  .......|+|+++++|..
T Consensus        96 d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~--~~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           96 DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG--GSEKADLGELNFSLCYLP  149 (296)
T ss_dssp             CSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC--SSCCSCCCEEEEEEEEET
T ss_pred             CCCCCCceEEEEEeccccccccCCccceeeeccccc--cccccccceEEEEEEecc
Confidence            999999999999996 333221 1 12234444211  112346799999999943

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.58  E-value=9.3e-15  Score=151.51  Aligned_cols=109  Identities=25%  Similarity=0.277  Sum_probs=93.0

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEe-ecCCCCeEEEEEEecCCCCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQG-SFPTDAKLTVEIKDHDSVSK  297 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v-~~p~~~~L~V~V~D~D~isk  297 (364)
                      ...|+|.|++|++|++ |.+|++||||+|.++++..  +|+++.+++||+||+.|.|.. .++....|.|+|||+|.+++
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~--kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~  469 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEF--RTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD  469 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEE--ECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSC
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEee--eeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCC
Confidence            3578999999999998 9999999999999998764  556799999999999999986 45678899999999999999


Q ss_pred             CceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         298 DDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       298 DD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      ||+||++.++|...   .+..+|.|          +.|+|.+++..
T Consensus       470 dD~LG~~~~~L~~g---~~~~~~~l----------~~G~l~~~~~~  502 (540)
T 3nsj_A          470 DDLLGSCDRSPHSG---FHEVTCEL----------NHGRVKFSYHA  502 (540)
T ss_dssp             CEEEEEEEECCCSE---EEEEEEEC----------SSSEEEEEEEE
T ss_pred             CCEEEEEEEEeeCC---cEEEEEEc----------CCeEEEEEEEE
Confidence            99999999999843   23456655          56999998876

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.2e-15  Score=130.68  Aligned_cols=95  Identities=18%  Similarity=0.275  Sum_probs=77.7

Q ss_pred             EEEEEEEEEecCCCCC-CCC------CCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEE
Q psy4890         220 VTIRVYIVRAYGLHPK-DKD------GKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEI  289 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~-D~~------G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V  289 (364)
                      ..|+|+|++|++|++. |.+      |.+||||++.+.. .....+|.++++++||+|||.|.|.+..+  ....|.|+|
T Consensus        26 ~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V  105 (147)
T 2enp_A           26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTV  105 (147)
T ss_dssp             TEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEE
T ss_pred             CEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEE
Confidence            4578999999999984 544      5899999999863 12234567789999999999999987532  246899999


Q ss_pred             EecCCCCCCceeEEEEeeccccccc
Q psy4890         290 KDHDSVSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       290 ~D~D~iskDD~IGet~IdLenr~~s  314 (364)
                      ||+|.+++|++||++.|+|.++...
T Consensus       106 ~d~d~~~~~~~iG~~~i~l~~l~~~  130 (147)
T 2enp_A          106 VDFDKFSRHCVIGKVSVPLCEVDLV  130 (147)
T ss_dssp             ECCSTTCCSCCCEEEEEETTTSCTT
T ss_pred             EECCCCcCCcEEEEEEEechhcCCC
Confidence            9999999999999999999987543

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.54  E-value=3e-14  Score=149.98  Aligned_cols=186  Identities=23%  Similarity=0.289  Sum_probs=124.6

Q ss_pred             eeeecCCCCcCC-cccCC--------------CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC-CCCCC
Q psy4890         134 CNIVPPKNELEL-VPEFE--------------HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLV  197 (364)
Q Consensus       134 ~~lkvy~~eLE~-~~~F~--------------~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p-~~~~~  197 (364)
                      .-++||+.-+.- ...|+              |||.+...+.|.+|++..++       -.|.+     +.|.. .+...
T Consensus       414 ~l~RvYP~g~R~~SSN~~P~~~W~~G~QmvAlN~Qt~d~~m~ln~g~F~~ng-------~~GYv-----lKP~~lr~~~~  481 (624)
T 1djx_A          414 CLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNG-------GCGYV-----LKPAFLRDPNT  481 (624)
T ss_dssp             SCEEEECCTTCTTCCCCCSHHHHTTTCCEEEECTTCCSHHHHHHHHHHHSGG-------GCSEE-----ECCGGGGCTTC
T ss_pred             cceeeccCCccCCCCCCCchHHhhccceeeeecccCCchHHhHHHHHhhcCC-------CCccE-----ECCHHHcCCCC
Confidence            446788766541 23443              46777777788888887654       12332     23321 11110


Q ss_pred             CCCCCccccccccccCCCcceeEEEEEEEEEecCCCCCCC--CCCCCcEEEEEECC---EEeeeeeeeecCC-CCCccce
Q psy4890         198 TFSGKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDK--DGKCDPYIVLKTGS---VEINDRENYVTNQ-INPYFGR  271 (364)
Q Consensus       198 ~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A~dL~p~D~--~G~sDPYV~I~Lg~---~~~~tkt~~i~~t-lnP~wne  271 (364)
                      .. .|.....+    |  +.....|+|+|++|++|++.+.  +|.+||||+|.+.+   ...+.+|++++++ +||+||+
T Consensus       482 ~f-~p~~~~~~----~--~~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE  554 (624)
T 1djx_A          482 TF-NSRALTQG----P--WWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM  554 (624)
T ss_dssp             CC-CTTSCCSS----T--TCCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEE
T ss_pred             Cc-Cccccccc----C--CccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCc
Confidence            11 11111111    2  2355778999999999999884  78999999999843   1233455678887 9999999


Q ss_pred             EEEEEeecCCCCeEEEEEEecCCCCCCceeEEEEeeccccccccCCCccccccccccCCCC--CceEEEEEEEEe
Q psy4890         272 HFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGS--SPGEVLPGITLQ  344 (364)
Q Consensus       272 ~Fef~v~~p~~~~L~V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~--~~GEIllSL~fq  344 (364)
                      .|+|.+..|....|.|+|||+|.+++|++||++.|+|..+..+ .+ +..|    ++..|.  ..|.|++.+.+.
T Consensus       555 ~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G-~r-~v~L----~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          555 EFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG-YR-HVHL----LSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             EEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCE-EE-EEEE----ECTTSCEEEEEEEEEEEEEE
T ss_pred             eEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCC-cE-EEeC----CCCCcCCCCceEEEEEEEEE
Confidence            9999998887789999999999999999999999999986431 22 3333    333443  358888888874

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.50  E-value=6.3e-14  Score=131.84  Aligned_cols=93  Identities=25%  Similarity=0.418  Sum_probs=80.0

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C-EEeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--S-VEINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~  292 (364)
                      ....|+|.|++|++|++.|.+|.+||||++.+.  + .....+|.++.+++||+||+.|.|.+..+.  ...|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            344688999999999999999999999999984  2 234556778899999999999999986543  45799999999


Q ss_pred             CCCCCCceeEEEEeeccc
Q psy4890         293 DSVSKDDYIGMTEMDLES  310 (364)
Q Consensus       293 D~iskDD~IGet~IdLen  310 (364)
                      |.+++|++||++.|+|..
T Consensus       228 d~~~~~~~iG~~~i~l~~  245 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNS  245 (284)
T ss_dssp             CSSSCCCEEEEEEEETTC
T ss_pred             CCCCCCcEEEEEEECCCC
Confidence            999999999999999975

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.39  E-value=8.8e-14  Score=132.55  Aligned_cols=93  Identities=20%  Similarity=0.328  Sum_probs=79.7

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--E-EeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEecC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS--V-EINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDHD  293 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~--~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~D  293 (364)
                      ...|+|+|++|++|+++|.+|.+||||++++..  + ..+.+|.++.+++||+||+.|.|.+..+.  ...|.|+|||+|
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  230 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD  230 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence            457889999999999999999999999999862  1 23446678899999999999999886443  567999999999


Q ss_pred             CCCCCceeEEEEeecccc
Q psy4890         294 SVSKDDYIGMTEMDLESR  311 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr  311 (364)
                      .+++|++||++.|+|...
T Consensus       231 ~~~~~~~iG~~~i~l~~~  248 (296)
T 1dqv_A          231 CIGHNEVIGVCRVGPEAA  248 (296)
T ss_dssp             SSSCCEEEEECCCSSCTT
T ss_pred             CCCCCceEEEEEECCccC
Confidence            999999999999999764

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.39  E-value=3.1e-13  Score=144.59  Aligned_cols=105  Identities=20%  Similarity=0.276  Sum_probs=87.6

Q ss_pred             ceeEEEEEEEEEecCCCC---CCCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEec
Q psy4890         217 KVNVTIRVYIVRAYGLHP---KDKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDH  292 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p---~D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~  292 (364)
                      +....|+|+|++|++|++   +|.+|.+||||++.+++. ..+.+|+++.+++||+|||+|.|.+..+....|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            345778999999999999   888899999999999842 2334557789999999999999999877788999999999


Q ss_pred             CCCCCCceeEEEEeeccccccc-cCCCcccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRFYS-RHRGSCAR  322 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~~s-~~~a~~gL  322 (364)
                      |.++ |++||++.|+|.++... .+..|+.|
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L  124 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIF  124 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEec
Confidence            9998 99999999999987543 23345555

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.37  E-value=3.1e-12  Score=111.04  Aligned_cols=116  Identities=13%  Similarity=0.110  Sum_probs=90.0

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeec-CCCCCccceEEEEEeecCC--CCeEEEEEEecCCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVT-NQINPYFGRHFEIQGSFPT--DAKLTVEIKDHDSVS  296 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~-~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~D~is  296 (364)
                      -.|+|.|.+|.||+     |++|||+++..-+.+.+|  +++. ++.||+|||.|++.+.-|.  ...|.|.|+|++.++
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kT--kvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~   93 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTFRGQSFYS--RVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF   93 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEETTEEEEC--CCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEEeccceee--EEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence            45788999999998     589999999997766666  4576 6999999999999986553  678999999999999


Q ss_pred             CCceeEEEEeeccccccccCCC-ccccccccccCCC-CCceEEEEEEEEeec
Q psy4890         297 KDDYIGMTEMDLESRFYSRHRG-SCARWTSDLEVSG-SSPGEVLPGITLQSG  346 (364)
Q Consensus       297 kDD~IGet~IdLenr~~s~~~a-~~gL~p~~y~~~G-~~~GEIllSL~fq~g  346 (364)
                      +|.+||++.|+|.+...+.+.. +-.|    .+..+ +..++|.++|+|+.-
T Consensus        94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~L----vD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           94 SNKLIGTFRMVLQKVVEENRVEVSDTL----IDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             CCEEEEEEEEESHHHHHHSEEEEEEEE----ECTTSCEEEEEEEEEEEEEET
T ss_pred             CCCEEEEEEEEhHHhccCCeEEEeecc----cCCCCCccccEEEEEEEecCC
Confidence            9999999999998776543221 1112    11122 335899999999763

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.20  E-value=2.1e-11  Score=128.87  Aligned_cols=95  Identities=27%  Similarity=0.425  Sum_probs=79.8

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC-CCCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP-TDAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p-~~~~L~V~V~D~D~i  295 (364)
                      ..|+|.|++|++|.++|.+|.+||||++.+..   ...+.+|.++++++||+||+.|.|.+... ....|.|+|||+|.+
T Consensus       172 ~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~  251 (674)
T 3pfq_A          172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  251 (674)
T ss_dssp             SEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSS
T ss_pred             ceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccc
Confidence            34788999999999999999999999999831   22344567789999999999999988643 356799999999999


Q ss_pred             CCCceeEEEEeeccccccc
Q psy4890         296 SKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s  314 (364)
                      ++||+||++.++|.++...
T Consensus       252 ~~dd~iG~~~i~l~~l~~~  270 (674)
T 3pfq_A          252 SRNDFMGSLSFGISELQKA  270 (674)
T ss_dssp             SCCEECCBCCCBTTHHHHC
T ss_pred             cccccccccccchhhhccC
Confidence            9999999999999876543

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.17  E-value=3e-12  Score=130.83  Aligned_cols=123  Identities=18%  Similarity=0.216  Sum_probs=18.7

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCC---CCCccceEEEEEeecCCCCeEEEEEEec-C
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQ---INPYFGRHFEIQGSFPTDAKLTVEIKDH-D  293 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~t---lnP~wne~Fef~v~~p~~~~L~V~V~D~-D  293 (364)
                      ....|+|.|++|++|+++|     ||||++.+++... .||+++.+|   +||+|||.|+|.+. |....|.|+|||. |
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~-~kT~v~~kt~~glnP~WnE~F~f~~~-~~~~~L~v~V~d~~d   81 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY-ARTTSKPRSASGDTVFWGEHFEFNNL-PAVRALRLHLYRDSD   81 (483)
T ss_dssp             EEECC---------------------------------------------------CCEECC------------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE-eeeeEEeCCCCCCCCccccEEEEecC-CCccEEEEEEEecCC
Confidence            3456889999999999987     9999999976432 355668888   99999999999874 4468899999994 5


Q ss_pred             ---CCCCCceeEEEEeeccccccc-cCCCccccccc-cccC------------------CC-CCceEEEEEEEEeecc
Q psy4890         294 ---SVSKDDYIGMTEMDLESRFYS-RHRGSCARWTS-DLEV------------------SG-SSPGEVLPGITLQSGE  347 (364)
Q Consensus       294 ---~iskDD~IGet~IdLenr~~s-~~~a~~gL~p~-~y~~------------------~G-~~~GEIllSL~fq~g~  347 (364)
                         ..++|++||++.|+|.+.... ....|..|... ....                  .+ ...|+|++.+.|+...
T Consensus        82 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A           82 KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS  159 (483)
T ss_dssp             -------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred             ccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence               378999999999999887543 23345555211 1000                  01 2469999999997764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.14  E-value=8.6e-11  Score=127.74  Aligned_cols=162  Identities=15%  Similarity=0.156  Sum_probs=108.6

Q ss_pred             CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC-CCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA  229 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p-~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A  229 (364)
                      |||.+...+.|++|++..++       -.|.     .+.|.- .++...+.| ....      +...+....|+|.|++|
T Consensus       674 N~QT~d~~m~lN~g~F~~nG-------~cGY-----VLKP~~lr~~~~~f~p-~~~~------~~~~~~~~~L~V~Visa  734 (885)
T 3ohm_B          674 NFQTLDVAMQLNAGVFEYNG-------RSGY-----LLKPEFMRRPDKSFDP-FTEV------IVDGIVANALRVKVISG  734 (885)
T ss_dssp             CTTCCSHHHHHHHHHHTTGG-------GCSE-----EECCGGGTCTTCCCCT-TCSS------CCTTCCCEEEEEEEEEE
T ss_pred             cCCCCCcccchhhhhhccCC-------ceee-----eecCHHHcCCCcCcCC-CcCc------ccCcccceEEEEEEEEe
Confidence            78888999999999997765       1343     233421 111111101 0000      11133456789999999


Q ss_pred             cCCCCCCCCCCCCcEEEEEECC----EEeeeeeeeecC-CCCCccce-EEEEE-eecCCCCeEEEEEEecCCCCCCceeE
Q psy4890         230 YGLHPKDKDGKCDPYIVLKTGS----VEINDRENYVTN-QINPYFGR-HFEIQ-GSFPTDAKLTVEIKDHDSVSKDDYIG  302 (364)
Q Consensus       230 ~dL~p~D~~G~sDPYV~I~Lg~----~~~~tkt~~i~~-tlnP~wne-~Fef~-v~~p~~~~L~V~V~D~D~iskDD~IG  302 (364)
                      ++|+..    .+||||+|.+.+    ...+.+|+++.+ ++||+||+ +|.|. +..|....|.|+|||+|    ||+||
T Consensus       735 q~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d----ddfiG  806 (885)
T 3ohm_B          735 QFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG----GKFVG  806 (885)
T ss_dssp             ESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT----TEEEE
T ss_pred             ccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC----ccEEe
Confidence            999853    589999999853    112234566665 69999999 69998 77788889999999987    89999


Q ss_pred             EEEeeccccccccCCCccccccccccCCCC--CceEEEEEEEEee
Q psy4890         303 MTEMDLESRFYSRHRGSCARWTSDLEVSGS--SPGEVLPGITLQS  345 (364)
Q Consensus       303 et~IdLenr~~s~~~a~~gL~p~~y~~~G~--~~GEIllSL~fq~  345 (364)
                      ++.|+|..+.. .+| +..|    ++..|.  ..|.|.+.+++..
T Consensus       807 ~~~lpL~~L~~-GyR-~vpL----~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          807 HRILPVSAIRS-GYH-YVCL----RNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             EEEEETTTCCC-EEE-EEEE----ECTTSCEEEEEEEEEEEEEEE
T ss_pred             eEEEEHHHcCC-Cce-EEEe----cCCCCCccCceEEEEEEEEEe
Confidence            99999987643 222 2223    333443  4789999999865

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.14  E-value=2.7e-10  Score=123.00  Aligned_cols=174  Identities=18%  Similarity=0.201  Sum_probs=108.6

Q ss_pred             CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC-CCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA  229 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p-~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A  229 (364)
                      |||.+...+.|++|++..++.       .|.+     +.|.. .+......|   +...    +........|+|.|++|
T Consensus       599 N~QT~d~~m~LN~g~F~~nG~-------cGYV-----LKP~~lr~~~~~f~p---~~~~----~~~~~~~~~L~V~Visa  659 (816)
T 3qr0_A          599 NFQCFDIAMCVNLGVFEYNGC-------SGYL-----LKPEFMRKLDKRFDP---FTES----TVDGVVAGTIEIKIISA  659 (816)
T ss_dssp             CTTCCSHHHHHHHHHTTTTTT-------CSEE-----ECCHHHHCTTCCCCT---TCCS----CCTTSCCEEEEEEEEEE
T ss_pred             cCcCCChhhhhhhhhhccCCc-------eeee-----ecChHhcCCCcccCC---CCCC----CcCCccceEEEEEEEEc
Confidence            688888899999999977651       3332     23320 011111101   1110    11233456789999999


Q ss_pred             cCCCCCCCCCCCCcEEEEEECC-----EEeeeeeeeecC-CCCCccceE-EEEE-eecCCCCeEEEEEEecCCCCCCcee
Q psy4890         230 YGLHPKDKDGKCDPYIVLKTGS-----VEINDRENYVTN-QINPYFGRH-FEIQ-GSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       230 ~dL~p~D~~G~sDPYV~I~Lg~-----~~~~tkt~~i~~-tlnP~wne~-Fef~-v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      ++|+..    .+||||+|.+.+     ...+.+|+++.+ ++||+||+. |.|. +..|.-..|+|.|||+|    ||+|
T Consensus       660 q~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d----ddfi  731 (816)
T 3qr0_A          660 QFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN----GKFI  731 (816)
T ss_dssp             ECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT----SCEE
T ss_pred             ccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC----CCee
Confidence            999753    589999999853     113335566665 699999997 9998 77787789999999985    8999


Q ss_pred             EEEEeeccccccccCCCccccccccccCCCC--CceEEEEEEEEeecccCCCCccceeee
Q psy4890         302 GMTEMDLESRFYSRHRGSCARWTSDLEVSGS--SPGEVLPGITLQSGEINSDPVRYWRSY  359 (364)
Q Consensus       302 Get~IdLenr~~s~~~a~~gL~p~~y~~~G~--~~GEIllSL~fq~g~~~~~~~~g~~~~  359 (364)
                      |++.|+|..+.. .+| +..|    ++..|.  ..+.|.+.+.+..-  .++.+....++
T Consensus       732 G~~~ipL~~L~~-GyR-~vpL----~~~~g~~~~~atLfv~i~~~~~--~~~~~~~~~~~  783 (816)
T 3qr0_A          732 GHRVMPLDGIKP-GYR-HVPL----RNESNRPLGLASVFAHIVAKDY--VSDAFADFADA  783 (816)
T ss_dssp             EEEEEESTTCCC-EEE-EEEE----ECTTSCEEEEEEEEEEEEEEEC--CC---------
T ss_pred             eEEEEEHHHcCC-cce-EEEE----eCCCCCCCCceEEEEEEEEEec--CchhHHHHHHH
Confidence            999999987643 222 1223    333443  34788888888653  44444444443

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.08  E-value=4e-10  Score=121.72  Aligned_cols=161  Identities=13%  Similarity=0.114  Sum_probs=104.9

Q ss_pred             CccccccccccccccccCCCCCccccceeeEEEeeEEEeecC-CCCCCCCCCCccccccccccCCCcceeEEEEEEEEEe
Q psy4890         151 HFADVLQTFDFYYGKLFSNNKNTLAEMKVGSFKGNVMFYPAD-RDHLVTFSGKPLSNGALQESIDNEKVNVTIRVYIVRA  229 (364)
Q Consensus       151 ~f~d~~~tf~L~rGk~~~~~~~~~~~~~vG~fKg~f~iyp~p-~~~~~~~~~~~~~~~l~~~yp~~~p~~~~LrV~Vv~A  229 (364)
                      |||.+...+.|.+|++..++.       .|.+     +.|.- ..+.....| ..-.      +...+....|+|.|++|
T Consensus       627 N~Qt~d~~m~ln~g~F~~nG~-------cGYV-----lKP~~lr~~~~~f~p-~~~~------~~~~~~~~~L~V~Visa  687 (799)
T 2zkm_X          627 NFQTMDLPMQQNMAVFEFNGQ-------SGYL-----LKHEFMRRPDKQFNP-FSVD------RIDVVVATTLSITVISG  687 (799)
T ss_dssp             CTTCCSHHHHHHHHHTTTGGG-------CSEE-----ECCGGGTCTTSCCCT-TSCC------TTTTTTCEEEEEEEEEE
T ss_pred             ccccCchHHHHHHhhhhccCC-------CCce-----ECCHHHhCCCccCCC-cccc------cccceeeeeEEEEEEec
Confidence            688889999999999976651       3433     23421 111111101 0000      11233456789999999


Q ss_pred             cCCCCCCCCCCCCcEEEEEECC----EEeeeeee-eec-CCCCCccce-EEEE-EeecCCCCeEEEEEEecCCCCCCcee
Q psy4890         230 YGLHPKDKDGKCDPYIVLKTGS----VEINDREN-YVT-NQINPYFGR-HFEI-QGSFPTDAKLTVEIKDHDSVSKDDYI  301 (364)
Q Consensus       230 ~dL~p~D~~G~sDPYV~I~Lg~----~~~~tkt~-~i~-~tlnP~wne-~Fef-~v~~p~~~~L~V~V~D~D~iskDD~I  301 (364)
                      ++|+.    +.+||||+|.+.+    ...+.+|+ ++. +++||+||+ .|.| .+..|.-..|.|.|||+|    ||+|
T Consensus       688 ~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d----~d~i  759 (799)
T 2zkm_X          688 QFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG----NKFL  759 (799)
T ss_dssp             ESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT----TEEE
T ss_pred             cccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC----CCcc
Confidence            99985    4689999999832    11123455 455 579999999 7999 787787789999999997    8999


Q ss_pred             EEEEeeccccccccCCCccccccccccCCCC--CceEEEEEEEEe
Q psy4890         302 GMTEMDLESRFYSRHRGSCARWTSDLEVSGS--SPGEVLPGITLQ  344 (364)
Q Consensus       302 Get~IdLenr~~s~~~a~~gL~p~~y~~~G~--~~GEIllSL~fq  344 (364)
                      |++.|+|..+.. ..+ +..|    ++..|.  ..+.|++.+.+.
T Consensus       760 G~~~ipl~~L~~-G~r-~v~L----~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          760 GHRIIPINALNS-GYH-HLCL----HSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEEEEEGGGBCC-EEE-EEEE----ECTTCCEEEEEEEEEEEEEE
T ss_pred             ceEeeehhhcCC-CcE-EEec----cCCCCCCCCceEEEEEEEEE
Confidence            999999987643 122 2223    233332  357777777763

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.38  E-value=4.7e-06  Score=70.53  Aligned_cols=111  Identities=10%  Similarity=0.170  Sum_probs=76.0

Q ss_pred             EEEEEEEEEec--CCCCCCCCCCCCcEEEEEECCEEee--eee-eeecCCCCCccceEEEEEeecCCCCeEEEEEEecCC
Q psy4890         220 VTIRVYIVRAY--GLHPKDKDGKCDPYIVLKTGSVEIN--DRE-NYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~--dL~p~D~~G~sDPYV~I~Lg~~~~~--tkt-~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~  294 (364)
                      ..+||.+.++.  .|++  ..-..||||.+.+......  .++ ...++|..|+||+.|.-.+.  ..+.|.|.|++...
T Consensus         6 ~flRi~~~~~~~~~~~~--~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~--~Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQA--EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY--EGRVIQIVLMRAAE   81 (126)
T ss_dssp             CEEEEEEEEEECSSCCC--SSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC--TTCEEEEEEEEETT
T ss_pred             ccEEeeeccccccccCC--ccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee--CCEEEEEEEEcCCC
Confidence            34677765544  3443  2346899999987543322  122 45678999999999998874  68899999996543


Q ss_pred             CCCCceeEEEEeeccccccc--cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         295 VSKDDYIGMTEMDLESRFYS--RHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s--~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                          +++.++.|.++++...  +..+...+|     ++-..+|+|++.+.|
T Consensus        82 ----~fvAn~tV~~edL~~~c~~~~g~~e~W-----vdLeP~Gkl~~~i~~  123 (126)
T 1yrk_A           82 ----EPVSEVTVGVSVLAERCKKNNGKAEFW-----LDLQPQAKVLMSVQY  123 (126)
T ss_dssp             ----EEEEEEEEEHHHHHHHHHTTTTEEEEE-----EECBSSCEEEEEEEE
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEE-----EecccCcEEEEEEEE
Confidence                9999999999988643  112222332     223468999999877

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.21  E-value=6.8e-06  Score=70.49  Aligned_cols=113  Identities=14%  Similarity=0.187  Sum_probs=75.7

Q ss_pred             EEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCEEe--eeee-eeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPKD-KDGKCDPYIVLKTGSVEI--NDRE-NYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D-~~G~sDPYV~I~Lg~~~~--~tkt-~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i  295 (364)
                      ..+||.+.+..-.+-.. ..-..||||.|.+.....  +.++ ...++|..|+||+.|.-.+.  ..+.|.|.|++... 
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~--~Gr~l~i~Vfh~a~-   86 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN--KGRVMQIIVKGKNV-   86 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC--SSCEEEEEEECSSC-
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE--CCeEEEEEEEcCCC-
Confidence            34677776554322221 123589999998754322  1233 34577999999999998874  58899999995443 


Q ss_pred             CCCceeEEEEeeccccccc--cCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         296 SKDDYIGMTEMDLESRFYS--RHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s--~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                         +++.++.|.++++...  +..+...+|     ++-..+|+|++.+.|
T Consensus        87 ---~fVAn~tV~~edL~~~ck~~~g~~e~W-----vdLeP~Gkl~v~i~~  128 (138)
T 2enj_A           87 ---DLISETTVELYSLAERCRKNNGKTEIW-----LELKPQGRMLMNARY  128 (138)
T ss_dssp             ---SCCEEEEEESHHHHHHHHHTTTCEEEE-----EECBSSCEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEE-----EecccCcEEEEEEEE
Confidence               8999999999988643  112222332     123468999999999

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=90.67  E-value=1.3  Score=48.74  Aligned_cols=102  Identities=11%  Similarity=0.103  Sum_probs=66.3

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEec
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDH  292 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~  292 (364)
                      ..++|.|+.+.++...   ...+-||.+.+  |++...  ..|..++...+|.||+...|.+   .+|.++.|.|+||+.
T Consensus       217 ~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~  293 (940)
T 2wxf_A          217 QPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV  293 (940)
T ss_dssp             SEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred             CceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence            3567889999888654   34677888765  554332  1234456677899999999876   458899999999997


Q ss_pred             CCC--C----------CCceeEEEEeeccccc--cccCCCcccccc
Q psy4890         293 DSV--S----------KDDYIGMTEMDLESRF--YSRHRGSCARWT  324 (364)
Q Consensus       293 D~i--s----------kDD~IGet~IdLenr~--~s~~~a~~gL~p  324 (364)
                      ..-  +          .+..||-+.++|-+..  +......+.+||
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G~~~l~lw~  339 (940)
T 2wxf_A          294 VEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMWP  339 (940)
T ss_dssp             C----------------CEEEEEEEEESBCTTSBBCCEEEEEECEE
T ss_pred             cCCccCccccccccccccceEEEEeeeEECCcCccccCCEEEEEee
Confidence            432  1          2458999999986532  212233456665

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=81.49  E-value=5.4  Score=44.46  Aligned_cols=102  Identities=14%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecC
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHD  293 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D  293 (364)
                      .++|.|+.+.++.... ....+-||.+.+  |++...  ..|..++ ..+|.||+..+|.+   .+|.++.|.|+||+..
T Consensus       356 ~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~  433 (1091)
T 3hhm_A          356 ALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSVK  433 (1091)
T ss_dssp             EEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCC
T ss_pred             CEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEec
Confidence            5688898888775432 334577888876  443221  1122223 45788999999986   4588999999999966


Q ss_pred             CC----CCCceeEEEEeeccccc--cccCCCcccccc
Q psy4890         294 SV----SKDDYIGMTEMDLESRF--YSRHRGSCARWT  324 (364)
Q Consensus       294 ~i----skDD~IGet~IdLenr~--~s~~~a~~gL~p  324 (364)
                      ..    .....||-+.++|-+-.  +....-.+.+||
T Consensus       434 ~~~~~~~~~~~lg~~n~~lfd~~~~L~~G~~~L~lW~  470 (1091)
T 3hhm_A          434 GRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWP  470 (1091)
T ss_dssp             CCC-------CCEEEEEESBCTTCBBCCEEEEEECEE
T ss_pred             CccCcccccceeEEeeeeeEccCCeEEcCCeEEEeec
Confidence            42    12357999999986532  222333456665

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=80.54  E-value=1.9  Score=48.08  Aligned_cols=101  Identities=8%  Similarity=0.071  Sum_probs=63.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCEEee--eeeeeecCCCCCccceEEEEEe---ecCCCCeEEEEEEecC
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GSVEIN--DRENYVTNQINPYFGRHFEIQG---SFPTDAKLTVEIKDHD  293 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~~~~~--tkt~~i~~tlnP~wne~Fef~v---~~p~~~~L~V~V~D~D  293 (364)
                      .++|.|+.+.++...   ...+-||.+.+  |++...  ..|..++...+|.||+...|.+   .+|.++.|.|+||+..
T Consensus       354 ~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~~  430 (1092)
T 2y3a_A          354 PFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAVL  430 (1092)
T ss_dssp             EEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC-
T ss_pred             CEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEec
Confidence            567888888888654   34567777543  655432  2234456677899999988875   4588999999999963


Q ss_pred             CC----------------------CCCceeEEEEeeccccc--cccCCCcccccc
Q psy4890         294 SV----------------------SKDDYIGMTEMDLESRF--YSRHRGSCARWT  324 (364)
Q Consensus       294 ~i----------------------skDD~IGet~IdLenr~--~s~~~a~~gL~p  324 (364)
                      ..                      ..+..||-+.++|-+..  +......+.+||
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G~~~l~lw~  485 (1092)
T 2y3a_A          431 DKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFKGQLRSGDVILHSWS  485 (1092)
T ss_dssp             -----------------------------CCEEEEESBCTTCBBCCEEEECCCCT
T ss_pred             CccccccccccccccccccccccccccceeEEEeeeeECCcCcccCCCeEEEEee
Confidence            11                      01237899999886532  212223456666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	364
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-13
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-13
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-12
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	5e-12
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-11
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-10
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-10
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-10
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	6e-10
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	7e-10
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	7e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	1e-09
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-09
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-07
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-07
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	5e-06

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.5 bits (159), Expect = 1e-13
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKT---GSVEINDRENYVTNQINPYFGRHFEIQG 277
            + V +  A  L P D +G  DPY+ LK       E   +   +   +NP +   F  Q 
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75

Query: 278 SFP-TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
                D +L+VEI D D  S++D++G     +  
Sbjct: 76  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 109

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV-TNQI 265
           G LQ S+D +  N  + V I++A  L   D  G  DPY+ +     +    E  V    +
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80

Query: 266 NPYFGRH--FEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
           NP F     F++  S      L + + D D  SK D IG  ++ + +
Sbjct: 81  NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYI---VLKTGSVEINDRENYVTN 263
           G L   +  +KV   + V I+ A  L  ++     +PY+    L   S +   R   V  
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60

Query: 264 QINPYFGRHFEIQGSFPTD---AKLTVEIKDHDSVSKD--DYIGMTEMDLES 310
            + P + + F        +     L + + D   V ++  +++G   ++LE+
Sbjct: 61  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 112

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 5/118 (4%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
           T+ V +V A GL   D     DPY+ L   + +             P +   F    S  
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT-TPEWNETFIFTVS-E 68

Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVL 338
              +L  +I D D  ++DD +G   + LE  F     GS      ++       GE+ 
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE---GSIPPTAYNVVKDEEYKGEIW 123

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.1 bits (142), Expect = 3e-11
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIV---LKTGSVEINDRENYVTN 263
           G +  S+        + V I+ A  L   D  G  DPY+    ++ G      +     N
Sbjct: 12  GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71

Query: 264 QINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
            +NPY+   F  +  F      ++ V + D+D + K+D IG   +   S
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 220 VTIRVYIVRAYGLHPKDKD--GKCDPYIVLKTGSVEINDRENYVT----NQINPYFGRHF 273
             +RV I+    L   +K+     DP ++++   V  +           N  NP +   F
Sbjct: 4   ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63

Query: 274 EIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRH 316
           E + + P  A +   ++D+DS SK+D+IG + +   S      
Sbjct: 64  EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 106

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYV----- 261
           G L  S+        + V I++A  L   D  G  DPY+     S     ++        
Sbjct: 7   GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66

Query: 262 TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
           T          F++      +  L++ + D+D +  ++ IG+  +  E+
Sbjct: 67  TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEA 115

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
            ++V +++A  L   D  GK DP+ +L+ G+  +     Y    +NP + + F       
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY--KNLNPEWNKVFTFPIKDI 64

Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
            D    V + D D     D++G   + L S
Sbjct: 65  HDVL-EVTVFDEDGDKPPDFLGKVAIPLLS 93

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 5/120 (4%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFP 280
            +++ ++ A     K       PY+ +         +     N  +P + +   +  +  
Sbjct: 7   QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSK--KTEKCNNTNSPKWKQPLTVIVTPV 64

Query: 281 TDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPG 340
           +       +  H ++  D  +G   +D+       +          L++ G        G
Sbjct: 65  SKLHF--RVWSHQTLKSDVLLGTAALDI-YETLKSNNMKLEEVVVTLQLGGDKEPTETIG 121

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 6e-10
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGK-CDPYIVLKTGSVEINDRE-NYVTNQ 264
           G L  S++         V I  A GL   D+     DPYI +     + +  +   +   
Sbjct: 9   GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT 68

Query: 265 INPYFGRHFEIQGSFPTD---AKLTVEIKDHDSVSKDDYIGMTEMDLES 310
           ++P F   F   G   T      L   I   D  S+DD IG   + L  
Sbjct: 69  LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 7e-10
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 221 TIRVYIVRAYGLHPKDKDGKCDPYIVL------------KTGSVEINDRENYVTNQINPY 268
            + ++I++A  L P+D +G  DP++ +            +  S E   R  YV   +NP 
Sbjct: 19  NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78

Query: 269 FGRHF---EIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
           + +      I         L V + D+D  S +D++G   +DL S
Sbjct: 79  WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 7e-10
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEIND---RENYVTN 263
           G L  S+  +    T+ V +++A  L   D  G  DPY+ +     +      + +    
Sbjct: 2   GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61

Query: 264 QINPYFGRHFEIQGSFPTDA--KLTVEIKDHDSVSKDDYIGMTEMDLESR 311
             N  F   F       +     +   + D +  S+++ IG   +   + 
Sbjct: 62  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 201 GKPLSNGALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENY 260
           G P   G +  ++     +  + V I++A  L  KD +G  DPY+ +          +  
Sbjct: 1   GAPC--GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 58

Query: 261 V---TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHR 317
           V   T          F +  +     KL   + D D  S+ D IG   +D       +  
Sbjct: 59  VHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP 118

Query: 318 GSCARWTSDLEVSG 331
                W  D+   G
Sbjct: 119 DR-PLW-RDILEGG 130

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 222 IRVYIVRAYGLHP---KDKDGKCDPYIVLKTGSVEIND-RENYVTNQINPYFGRHFEIQG 277
             V ++RA  +      D     DPY+ L   +   +  R  +  N INP +   FE   
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 278 SFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLES 310
               +  L + + D + V  D+ +G     + S
Sbjct: 65  DPNQENVLEITLMDANYV-MDETLGTATFTVSS 96

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 207 GALQESIDNEKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLK---TGSVEINDRENYVTN 263
           G +  S+        + V I+R   L   D +G  DP++ L        +   +      
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61

Query: 264 QINPYFGRHFEIQGSFPTDAKLTVEIK--DHDSVSKDDYIGMTEMDLES 310
            +NP F   F         AK +++I   D+D    +DYIG  ++ + +
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 110

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 16/123 (13%)

Query: 221 TIRVYIVRAYGLHPKD-----------KDGKCDPYIVLKTGSVEINDRENYVTNQINPYF 269
            +++ I  A  L P             +    DPYI L         +        +P +
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR-IGQTATKQKTNSPAW 65

Query: 270 GRHFEIQGSFPTDAKLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEV 329
              F          +L V       +  DD++    +  E             W  DLE 
Sbjct: 66  HDEFVTDVCNGRKIELAV--FHDAPIGYDDFVANCTIQFEE-LLQNGSRHFEDWI-DLEP 121

Query: 330 SGS 332
            G 
Sbjct: 122 EGK 124

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 224 VYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDA 283
           V + +A     ++K    + Y+ LK  +V+             P + + F  + +     
Sbjct: 6   VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTI---AVRGSQPSWEQDFMFEINRLDL- 58

Query: 284 KLTVEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL 343
            LTVE+ +   +  D  +G   + L +   S   G    W +    +  +  E+      
Sbjct: 59  GLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGP-GEWLTLDSQAIMADSEICGTKDP 116

Query: 344 QSGEINSDPVRY 355
               I  D   +
Sbjct: 117 TFHRILLD-AHF 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.81
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.79
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.72
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.72
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.71
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.7
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.66
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.66
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.65
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.63
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.62
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.57
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.57
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.57
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.56
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.55
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.54
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.44
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.43
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.29
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	93.27

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.4e-20  Score=151.68  Aligned_cols=119  Identities=20%  Similarity=0.293  Sum_probs=98.2

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      .+|+|+|++|+||+++|.+|.+||||++++++++.+|  +++.++.||.||+.|.|.+..+ ...|.|+|||+|.+++|+
T Consensus         6 G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T--~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           6 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQT--HTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             EEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEEC--CCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEE--EeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcCcc
Confidence            5789999999999999999999999999999887655  5678999999999999998754 478999999999999999


Q ss_pred             eeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEe
Q psy4890         300 YIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQ  344 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq  344 (364)
                      +||++.|+|.+.... ...|..|  ......+..+|+|++++.+-
T Consensus        83 ~lG~~~i~l~~l~~~-~~~~~~l--~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDG-QPNCYVL--KNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             ECCBCEEEGGGCCSS-CCEECCC--BCSCTTSCCSSEEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCC-CceEEEc--cccCCCCceeEEEEEEEEEE
Confidence            999999999886432 2234333  22334556789999999874

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=2.3e-19  Score=150.69  Aligned_cols=123  Identities=21%  Similarity=0.258  Sum_probs=98.1

Q ss_pred             cceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC
Q psy4890         216 EKVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV  295 (364)
Q Consensus       216 ~p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i  295 (364)
                      +|. .+|+|+|++|++|+++|..|++||||+++++++..++++ +..+++||+||+.|.|.+.. ....|.|+|||+|.+
T Consensus         7 ~p~-G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~-~~~~~~nP~Wne~f~f~v~~-~~~~L~v~V~d~d~~   83 (136)
T d1wfja_           7 GPH-GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNV-AEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCE-EEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCC-CTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSC
T ss_pred             CCc-EEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEE-EecCCCcEEEeeEEEEEEcC-ccceEEEEEEEecCC
Confidence            444 588999999999999999999999999999987766543 23469999999999999874 456799999999999


Q ss_pred             CCCceeEEEEeeccccccccCCCcccccccccc--CCCCCceEEEEEEEEeec
Q psy4890         296 SKDDYIGMTEMDLESRFYSRHRGSCARWTSDLE--VSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s~~~a~~gL~p~~y~--~~G~~~GEIllSL~fq~g  346 (364)
                      ++|++||++.|+|.+.+.....     .+.++.  ..+..+|+|+++|.|.+.
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~-----~~~~~~l~~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSI-----PPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEE-----EEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEhHHhcccCCc-----CcEEEEecCCCccCEEEEEEEEEEeC
Confidence            9999999999999987543111     112222  245678999999999653

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=140.23  Aligned_cols=122  Identities=11%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCC
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSK  297 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~isk  297 (364)
                      .+..|+|+|++|++++..+..+.+||||++.++++..+|  .++.++.||.||+.|.|.+.  ....|.|+|||+|.+++
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT--~v~~~t~nP~wne~f~f~~~--~~~~l~~~V~d~d~~~~   79 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKT--EKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQTLKS   79 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEEC--CCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCSSSC
T ss_pred             cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEee--EEEEecccEEEcceEEEEEE--ecceeEEEEEEccCCCC
Confidence            345689999999999999888999999999999987665  55789999999999999985  35689999999999999


Q ss_pred             CceeEEEEeeccccccccCCCcc--ccc-cccccCCC-CCceEEEEEEEE
Q psy4890         298 DDYIGMTEMDLESRFYSRHRGSC--ARW-TSDLEVSG-SSPGEVLPGITL  343 (364)
Q Consensus       298 DD~IGet~IdLenr~~s~~~a~~--gL~-p~~y~~~G-~~~GEIllSL~f  343 (364)
                      |++||++.|+|.++.........  .++ .......+ ...|+|.+.|..
T Consensus        80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~  129 (133)
T d2nq3a1          80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  129 (133)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence            99999999999887543211111  110 11111122 456998877764

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.4e-18  Score=138.87  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=93.0

Q ss_pred             EEEEEEEEEecCCCCC---CCCCCCCcEEEEEECCE-EeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPK---DKDGKCDPYIVLKTGSV-EINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~---D~~G~sDPYV~I~Lg~~-~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~i  295 (364)
                      ..|+|+|++|+||+..   |..|.+||||++.+++. ..+.+|+++.++.||.||+.|.|.+..+....|.|+|||+|..
T Consensus         3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~   82 (126)
T d1rlwa_           3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV   82 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred             cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence            4689999999999874   44689999999999752 2334567789999999999999999877788999999999976


Q ss_pred             CCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         296 SKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                       +|++||++.|+|.++..+..      ...+|.+.....|+|.++|.+
T Consensus        83 -~d~~lG~~~i~L~~l~~~~~------~~~~~~L~~~~~g~i~~~l~~  123 (126)
T d1rlwa_          83 -MDETLGTATFTVSSMKVGEK------KEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             -CCEEEEEEEEEGGGSCTTCE------EEEEEEETTTEEEEEEEEEEC
T ss_pred             -CCCeEEEEEEEHHHccCCCe------EEEEEEccCCCeEEEEEEEEE
Confidence             68999999999988754311      123445556677999988876

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.71  E-value=4.5e-17  Score=137.29  Aligned_cols=120  Identities=18%  Similarity=0.293  Sum_probs=95.1

Q ss_pred             eeEEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEE
Q psy4890         218 VNVTIRVYIVRAYGLHPKD-----------KDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLT  286 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D-----------~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~  286 (364)
                      ...+|+|+|++|++|++.+           ..+.+||||+++++++... +|.++.++.||.||+.|.|.+..  ...|.
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~-~T~~~~~t~~P~Wne~f~f~v~~--~~~l~   80 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG-QTATKQKTNSPAWHDEFVTDVCN--GRKIE   80 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEE-ECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCc-EeeEEcCCCCccCccEEEEEEec--CCceE
Confidence            4678999999999999864           4577999999999987643 34668899999999999999863  57899


Q ss_pred             EEEEecCCCCCCceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEEeec
Q psy4890         287 VEIKDHDSVSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITLQSG  346 (364)
Q Consensus       287 V~V~D~D~iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~fq~g  346 (364)
                      |+|||+|.+++|++||++.|+|.++...... ..   ..++.++  .+|+|++++.+.+.
T Consensus        81 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~-~~---~~w~~L~--p~G~v~l~v~~~~~  134 (136)
T d1gmia_          81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSR-HF---EDWIDLE--PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-EE---EEEEECB--SSCEEEEEEEEEEE
T ss_pred             EEEEEecCCCCceeEEEEEEEHHHhhhcCCc-ce---eEEEeCC--CCcEEEEEEEEEeC
Confidence            9999999999999999999999987643211 11   2233332  57999999999654

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.5e-17  Score=138.95  Aligned_cols=103  Identities=26%  Similarity=0.373  Sum_probs=83.3

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecCC-CCeEEEEEEecCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFPT-DAKLTVEIKDHDSV  295 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p~-~~~L~V~V~D~D~i  295 (364)
                      ..|+|+|++|+||+++|.+|.+||||++++..   ...+.+|++++++.||+||+.|.|.+..+. ...|.|+|||+|.+
T Consensus        15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~   94 (132)
T d1a25a_          15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT   94 (132)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence            45889999999999999999999999999832   223345677899999999999999986443 56899999999999


Q ss_pred             CCCceeEEEEeeccccccccCCCcccc
Q psy4890         296 SKDDYIGMTEMDLESRFYSRHRGSCAR  322 (364)
Q Consensus       296 skDD~IGet~IdLenr~~s~~~a~~gL  322 (364)
                      ++|++||++.|+|.++..+....|..|
T Consensus        95 ~~d~~iG~~~i~l~~l~~~~~~~W~~L  121 (132)
T d1a25a_          95 SRNDFMGSLSFGISELQKAGVDGWFKL  121 (132)
T ss_dssp             SCCEEEEEEEEEHHHHTTCCEEEEEEC
T ss_pred             CCCcEeEEEEEeHHHcCCCCCCeEEEC
Confidence            999999999999988644332334444

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=4.7e-16  Score=129.91  Aligned_cols=118  Identities=24%  Similarity=0.360  Sum_probs=84.9

Q ss_pred             EEEEEEEEecCCCCC--CCCCCCCcEEEEEECC---EEeeeeeeee-cCCCCCccceEEEEEeecCCCCeEEEEEEecCC
Q psy4890         221 TIRVYIVRAYGLHPK--DKDGKCDPYIVLKTGS---VEINDRENYV-TNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDS  294 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~--D~~G~sDPYV~I~Lg~---~~~~tkt~~i-~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~  294 (364)
                      .|+|.|++|++|+..  +.+|.+||||++++.+   ...+.+|+++ .+++||.||+.|+|.+..+....|.|+|||+|.
T Consensus         5 ~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~   84 (131)
T d1qasa2           5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS   84 (131)
T ss_dssp             EEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCT
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEecC
Confidence            578999999999754  5678899999999832   1222334444 456899999999999887778899999999999


Q ss_pred             CCCCceeEEEEeeccccccccCCCccccccccccCCCC--CceEEEEEEEEe
Q psy4890         295 VSKDDYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGS--SPGEVLPGITLQ  344 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~--~~GEIllSL~fq  344 (364)
                      +++|++||++.|+|.+.... ++ +..|    ++..|.  ..+.|++.+.++
T Consensus        85 ~~~d~~iG~~~i~l~~l~~g-~~-~~~L----~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          85 SSKNDFIGQSTIPWNSLKQG-YR-HVHL----LSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTCCEEEEEEEEEGGGBCCE-EE-EEEE----ECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeccCCC-CE-EEEC----CCCCcCCCCCCEEEEEEEEE
Confidence            99999999999999876431 11 2222    233443  356788877764

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.2e-16  Score=133.20  Aligned_cols=97  Identities=24%  Similarity=0.337  Sum_probs=80.6

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecC
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS-VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHD  293 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D  293 (364)
                      +....|+|.|++|+||++++.+|.+||||++++.+ .....+|+++.++.||+||++|.|.+..+  ....|.|+|||+|
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            34456889999999999999999999999999853 22234567789999999999999997644  3567999999999


Q ss_pred             CCCCCceeEEEEeecccccc
Q psy4890         294 SVSKDDYIGMTEMDLESRFY  313 (364)
Q Consensus       294 ~iskDD~IGet~IdLenr~~  313 (364)
                      .+++|++||++.|++.....
T Consensus        95 ~~~~d~~iG~~~i~~~~~l~  114 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLELA  114 (130)
T ss_dssp             SSSCCCEEEEEECCCTTGGG
T ss_pred             CCCCCceEEEEEECchhhhh
Confidence            99999999999999765443

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.2e-17  Score=137.11  Aligned_cols=103  Identities=23%  Similarity=0.330  Sum_probs=82.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEECCE------------EeeeeeeeecCCCCCccceEEEEEeec---CCCCeE
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV------------EINDRENYVTNQINPYFGRHFEIQGSF---PTDAKL  285 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~------------~~~tkt~~i~~tlnP~wne~Fef~v~~---p~~~~L  285 (364)
                      .|+|.|++|+||+++|..|.+||||++++...            ..+.+|+++++++||.||+.|.|....   .....|
T Consensus        19 ~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L   98 (142)
T d1rh8a_          19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL   98 (142)
T ss_dssp             EEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEE
T ss_pred             EEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEE
Confidence            47899999999999999999999999998421            112356778899999999999997432   246789


Q ss_pred             EEEEEecCCCCCCceeEEEEeeccccccc-cCCCccccc
Q psy4890         286 TVEIKDHDSVSKDDYIGMTEMDLESRFYS-RHRGSCARW  323 (364)
Q Consensus       286 ~V~V~D~D~iskDD~IGet~IdLenr~~s-~~~a~~gL~  323 (364)
                      .|+|||+|.+++|++||++.|+|.++..+ ....|+.|.
T Consensus        99 ~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~  137 (142)
T d1rh8a_          99 EVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK  137 (142)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred             EEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECc
Confidence            99999999999999999999999987654 233455553

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.5e-16  Score=133.21  Aligned_cols=95  Identities=22%  Similarity=0.336  Sum_probs=79.9

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCCCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG-SVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDSVS  296 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg-~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~is  296 (364)
                      ..|+|+|++|+||++++..|.+||||++.+. ......+|++++++.||.||++|.|.+..+  ....|.|+|||+|.++
T Consensus        34 ~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~  113 (143)
T d1rsya_          34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  113 (143)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC
Confidence            3578999999999999999999999999983 222334556789999999999999987543  3678999999999999


Q ss_pred             CCceeEEEEeeccccccc
Q psy4890         297 KDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       297 kDD~IGet~IdLenr~~s  314 (364)
                      ++++||++.|+|.+...+
T Consensus       114 ~~~~iG~~~i~L~~~~~~  131 (143)
T d1rsya_         114 KHDIIGEFKVPMNTVDFG  131 (143)
T ss_dssp             CCEEEEEEEEEGGGCCCS
T ss_pred             CCcEEEEEEEEchhccCC
Confidence            999999999999987543

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.8e-15  Score=127.03  Aligned_cols=117  Identities=17%  Similarity=0.146  Sum_probs=86.9

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCEEeeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCCc
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVEINDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKDD  299 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskDD  299 (364)
                      .+|.|+|++|++|.++|   ++||||.+++++.+.+|  .++ ++.||.||+.|.|.+..| ...|.|+|||++.. +|+
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T--~~~-k~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d~   73 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTT--IAV-RGSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WDT   73 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEEC--CCE-ESSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEE--EEe-cCCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CCc
Confidence            35789999999999976   57999999999876555  344 456999999999999866 56799999999987 699


Q ss_pred             eeEEEEeeccccccccC---CCccccccccccCCC-------CCceEEEEEEEEe
Q psy4890         300 YIGMTEMDLESRFYSRH---RGSCARWTSDLEVSG-------SSPGEVLPGITLQ  344 (364)
Q Consensus       300 ~IGet~IdLenr~~s~~---~a~~gL~p~~y~~~G-------~~~GEIllSL~fq  344 (364)
                      +||++.|+|.++..+..   ..|..|.+......|       .....|+++.+||
T Consensus        74 ~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~~  128 (128)
T d2cjta1          74 MVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  128 (128)
T ss_dssp             EEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred             ceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEcC
Confidence            99999999999876522   235555333222222       2355788887774

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.6e-15  Score=125.50  Aligned_cols=95  Identities=26%  Similarity=0.335  Sum_probs=76.9

Q ss_pred             EEEEEEEEEecCCCCCCCCCC-CCcEEEEEEC-CEEeeeeeeeecCCCCCccceEEEEEeecCC---CCeEEEEEEecCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGK-CDPYIVLKTG-SVEINDRENYVTNQINPYFGRHFEIQGSFPT---DAKLTVEIKDHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~-sDPYV~I~Lg-~~~~~tkt~~i~~tlnP~wne~Fef~v~~p~---~~~L~V~V~D~D~  294 (364)
                      ..|+|+|++|+||++++..|. +||||++.+. ......+|++++++.||.||+.|.|....+.   ...|.|+|||+|.
T Consensus        22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~  101 (138)
T d1ugka_          22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred             CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC
Confidence            357899999999999987765 7999999983 2222345577899999999999999743222   5689999999999


Q ss_pred             CCCCceeEEEEeeccccccc
Q psy4890         295 VSKDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s  314 (364)
                      +++|++||++.|+|.+..++
T Consensus       102 ~~~~~~iG~~~i~L~~~~~~  121 (138)
T d1ugka_         102 FSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             SCCCCCCEEEEEECTTCCCT
T ss_pred             CCCCcEEEEEEEEcccccCC
Confidence            99999999999999887543

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=3.8e-15  Score=124.17  Aligned_cols=95  Identities=21%  Similarity=0.346  Sum_probs=79.4

Q ss_pred             ceeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEe
Q psy4890         217 KVNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKD  291 (364)
Q Consensus       217 p~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D  291 (364)
                      |....|+|+|++|+||++.+..|.+||||++++..   ...+.+|+++.++.||.||+.|.|.+...  ....|.|+|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            34446889999999999999999999999999832   23334567889999999999999998543  36789999999


Q ss_pred             cCCCCCCceeEEEEeecccc
Q psy4890         292 HDSVSKDDYIGMTEMDLESR  311 (364)
Q Consensus       292 ~D~iskDD~IGet~IdLenr  311 (364)
                      +|.+++|++||++.|+|.+.
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCCCEEEEEEeCcccc
Confidence            99999999999999999753

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-15  Score=124.74  Aligned_cols=97  Identities=18%  Similarity=0.307  Sum_probs=74.3

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---EEeeeeeeeecCCCCCccceEEEEEe-ecC--CCCeEEEEEEe
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGS---VEINDRENYVTNQINPYFGRHFEIQG-SFP--TDAKLTVEIKD  291 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~---~~~~tkt~~i~~tlnP~wne~Fef~v-~~p--~~~~L~V~V~D  291 (364)
                      ....|+|+|++|+||++.+..+.+||||++.+.+   .....+|.+++++.||.||+.|.|.. ...  ....|.|+|||
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d   91 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   91 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEE
Confidence            3446889999999999999999999999999832   22234567789999999999999973 322  35689999999


Q ss_pred             cCCCC--CCceeEEEEeeccccccc
Q psy4890         292 HDSVS--KDDYIGMTEMDLESRFYS  314 (364)
Q Consensus       292 ~D~is--kDD~IGet~IdLenr~~s  314 (364)
                      +|.++  ++++||++.|+|.+...+
T Consensus        92 ~~~~~~~~~~~iG~~~i~l~~~~~~  116 (125)
T d2bwqa1          92 QARVREEESEFLGEILIELETALLD  116 (125)
T ss_dssp             C-------CEEEEEEEEEGGGCCCS
T ss_pred             CCCCCCCCCeeEEEEEEEchhcCCC
Confidence            99764  466999999999887543

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.8e-15  Score=125.11  Aligned_cols=94  Identities=17%  Similarity=0.261  Sum_probs=72.9

Q ss_pred             eeEEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CC-EEeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEec
Q psy4890         218 VNVTIRVYIVRAYGLHPKDKDGKCDPYIVLKT--GS-VEINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDH  292 (364)
Q Consensus       218 ~~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~L--g~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~  292 (364)
                      ....|.|+|++|+||++.+.+|.+||||++.+  +. ...+.+|.++.++.||.||++|.|.++...  ...|.|+|||+
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            33457899999999999999999999999998  33 334456778899999999999999875432  45699999999


Q ss_pred             CCCCCCceeEEEEeecccc
Q psy4890         293 DSVSKDDYIGMTEMDLESR  311 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr  311 (364)
                      |.+++|++||++.|+|...
T Consensus        93 ~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          93 ERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             CTTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCCEEEEEEEcchhC
Confidence            9999999999999998753

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=7.7e-15  Score=126.00  Aligned_cols=91  Identities=25%  Similarity=0.439  Sum_probs=78.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C-EEeeeeeeeecCCCCCccceEEEEEeecCC--CCeEEEEEEecCCC
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--S-VEINDRENYVTNQINPYFGRHFEIQGSFPT--DAKLTVEIKDHDSV  295 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~-~~~~tkt~~i~~tlnP~wne~Fef~v~~p~--~~~L~V~V~D~D~i  295 (364)
                      .|.|+|++|+||++.+..+.+||||++++.  + .....+|.+++++.||+||+.|.|.++.+.  ...|.|+|||+|.+
T Consensus        26 ~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~  105 (157)
T d1uowa_          26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI  105 (157)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSS
T ss_pred             EEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCC
Confidence            468999999999999999999999999984  2 233346677889999999999999986543  56899999999999


Q ss_pred             CCCceeEEEEeecccc
Q psy4890         296 SKDDYIGMTEMDLESR  311 (364)
Q Consensus       296 skDD~IGet~IdLenr  311 (364)
                      ++|++||++.|+|...
T Consensus       106 ~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_         106 GKNDAIGKVFVGYNST  121 (157)
T ss_dssp             SCCCEEEEEEEETTCC
T ss_pred             CCCceeEEEEEecccC
Confidence            9999999999999653

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-14  Score=122.07  Aligned_cols=101  Identities=15%  Similarity=0.189  Sum_probs=81.1

Q ss_pred             eEEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CEEeeeeeeeecCCCCCccceEEEEEeecC--CCCeEEEEEEecCC
Q psy4890         219 NVTIRVYIVRAYGLHPKDKDGKCDPYIVLKTG--SVEINDRENYVTNQINPYFGRHFEIQGSFP--TDAKLTVEIKDHDS  294 (364)
Q Consensus       219 ~~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg--~~~~~tkt~~i~~tlnP~wne~Fef~v~~p--~~~~L~V~V~D~D~  294 (364)
                      ...|.|+|++|++|+   ..|.+||||++.+.  ......+|.+++++.||+||+.|.|.+...  ....|.|+|||+|.
T Consensus        25 ~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          25 KAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            345789999999994   35789999999984  344455677889999999999999998543  36789999999999


Q ss_pred             CCCCceeEEEEeeccccccc-cCCCcccc
Q psy4890         295 VSKDDYIGMTEMDLESRFYS-RHRGSCAR  322 (364)
Q Consensus       295 iskDD~IGet~IdLenr~~s-~~~a~~gL  322 (364)
                      +++|++||++.|+|.+...+ ....|..|
T Consensus       102 ~~~~~~iG~~~i~L~~l~~~~~~~~W~~L  130 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTSVPLGAAQWGEL  130 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCCEEEEC
T ss_pred             cccceeeeEEEEEhHHccCCCCceEeEeC
Confidence            99999999999999887544 23345555

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=8e-15  Score=123.91  Aligned_cols=92  Identities=21%  Similarity=0.323  Sum_probs=77.6

Q ss_pred             EEEEEEEEEecCCCCCCCCCCCCcEEEEEECCE---EeeeeeeeecCCCCCccceEEEEEeec--CCCCeEEEEEEecCC
Q psy4890         220 VTIRVYIVRAYGLHPKDKDGKCDPYIVLKTGSV---EINDRENYVTNQINPYFGRHFEIQGSF--PTDAKLTVEIKDHDS  294 (364)
Q Consensus       220 ~~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~---~~~tkt~~i~~tlnP~wne~Fef~v~~--p~~~~L~V~V~D~D~  294 (364)
                      ..|+|.|++|+||++.+..|.+||||++.+...   ..+.+|.++++++||.||+.|.|.+..  .....|.|+|||++.
T Consensus        20 ~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~   99 (145)
T d1dqva2          20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC   99 (145)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS
T ss_pred             CEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC
Confidence            457899999999999999999999999998642   123456778999999999999997653  235679999999999


Q ss_pred             CCCCceeEEEEeecccc
Q psy4890         295 VSKDDYIGMTEMDLESR  311 (364)
Q Consensus       295 iskDD~IGet~IdLenr  311 (364)
                      +++|++||++.|+|+..
T Consensus       100 ~~~~~~iG~~~i~l~~~  116 (145)
T d1dqva2         100 IGHNEVIGVCRVGPEAA  116 (145)
T ss_dssp             SSCCEEEEECCCSSCTT
T ss_pred             CCCCcEEEEEEECchHc
Confidence            99999999999999764

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.4e-13  Score=112.72  Aligned_cols=111  Identities=10%  Similarity=0.093  Sum_probs=77.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEECCEE---eeeeeeeecCCCCCccceEEEEEeecCCCCeEEEEEEecCCCCCC
Q psy4890         222 IRVYIVRAYGLHPKDKDGKCDPYIVLKTGSVE---INDRENYVTNQINPYFGRHFEIQGSFPTDAKLTVEIKDHDSVSKD  298 (364)
Q Consensus       222 LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg~~~---~~tkt~~i~~tlnP~wne~Fef~v~~p~~~~L~V~V~D~D~iskD  298 (364)
                      ++|.+..+..+  ++..|.+||||.|++.+..   ...++.++++|+||+|||+|+|.+.  ....|.|.|||+|    |
T Consensus         7 ~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~--~~~~l~i~V~d~d----d   78 (123)
T d1bdya_           7 ISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY--EGRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECC--TTCEEEEEEEEET----T
T ss_pred             EEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEc--cccEEEEEEEEcc----c
Confidence            34444444443  3457889999999995421   1234567899999999999999985  3578999999986    7


Q ss_pred             ceeEEEEeeccccccccCCCccccccccccCCCCCceEEEEEEEE
Q psy4890         299 DYIGMTEMDLESRFYSRHRGSCARWTSDLEVSGSSPGEVLPGITL  343 (364)
Q Consensus       299 D~IGet~IdLenr~~s~~~a~~gL~p~~y~~~G~~~GEIllSL~f  343 (364)
                      +++|.+.|++..+....... .+....++.+  ..+|+|++++.|
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~-~~~~~~W~~L--~~~Gkl~l~v~~  120 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKN-NGKAEFWLDL--QPQAKVLMCVQY  120 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTT-TTEEEEEEEC--BSSCEEEEEEEE
T ss_pred             cccCccEEehhheeeccccC-CCcccEEEeC--CCCEEEEEEEEE
Confidence            89999999998775431111 1111234433  368999999988

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.6e-12  Score=104.24  Aligned_cols=84  Identities=17%  Similarity=0.284  Sum_probs=65.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEC------CEEeeeeeeeecCCCCCccceE-EEE-EeecCCCCeEEEEEEec
Q psy4890         221 TIRVYIVRAYGLHPKDKDGKCDPYIVLKTG------SVEINDRENYVTNQINPYFGRH-FEI-QGSFPTDAKLTVEIKDH  292 (364)
Q Consensus       221 ~LrV~Vv~A~dL~p~D~~G~sDPYV~I~Lg------~~~~~tkt~~i~~tlnP~wne~-Fef-~v~~p~~~~L~V~V~D~  292 (364)
                      +|+|.|++|++|+..    ++||||++.+-      .++.++++.+..+++||.||+. |.+ .+..|....|.+.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            578999999999765    47999999982      2334444445578999999975 444 45667778999999998


Q ss_pred             CCCCCCceeEEEEeeccccc
Q psy4890         293 DSVSKDDYIGMTEMDLESRF  312 (364)
Q Consensus       293 D~iskDD~IGet~IdLenr~  312 (364)
                      |    |++||++.|+|....
T Consensus        78 d----~~~lG~~~ipl~~l~   93 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALN   93 (122)
T ss_dssp             T----TEEEEEEEEEGGGBC
T ss_pred             C----CCEEEEEEEEcccCc
Confidence            6    899999999998764