Psyllid ID: psy4895

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
MTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVEKNEV
ccccccccHHHHHcccccEEEEccccccHHHHHHHHHHccccccccccccccccHHHHccccccEEEccccccHHHHHHHHHHHHcccccccEEccccccccccccccccccccccccHHHHHHHHHHHHccccccccccEEEcccccccccccccccccccccEEEEEcccccEEEEEEccccccccccEEEEEEEccEEEEEcccHHHHccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHccccccEEEEcccccccccccccccccEEEEccccccccccccccHHHHHHHHHccccccccEEcccccccccccEEEEccHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccc
cccccccEEEEEEEccccEEEEEccEEEccccHHHHHHHccccEEEEccccccccEEEcccccEEEEEcccccHHHHHHHHHHHHcccccccHHHcccEHEccccccccccccccHccHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccEEEEEEccccEEEEcccccccccccccEEEEEcccEEEEEccHHHHHHHccccccccccccHHHHcccccccccEEEEccccccEEEEEEEccccccHHHHHHHHHHHHHHcccHHHEEEEEEEcccccccccccHHHEEEEEEEcccccccccccHHHHHHHHHccccccccccEccccHHHHccEEEEccHHHHHHHHHHccHHcccccccHcEEEEHHHHcccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHccc
mtgnnvnvekyvikkapptvyyipdfitREEESHLLNKIYshnllmtgnnvnvekyvikkapptvyyipdfitREEESHLLNKiysvpkpkwtqlsnrklqnwggiphpkgmiaeKLPEWLDTYLERINQLgvfesvkpnHVLINEYlagqgimphfdgplyyptistiscgshtilnfyepdrtsegsevcsIFVDARSLLILQDDMYEKYVHgissktddtlssdilnccssspnqmlnrstraGKKAVLFVCLgnicrspmAACVFKYLINARnqadrwtvdsagtgdwhvqhvnqadrwtvdsagtgdwhvghpadsrardvlakhnvpcqhQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVkqgikpnakilylgdydpkgvkivedpyysrakdaFDICYEHCYRSCEQFLNKVEKNEV
mtgnnvnvekyvikkapptvyYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYsvpkpkwtqLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGIssktddtlsSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEkravkqgikpnakilylgdydpkgVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVEKNEV
MTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVEKNEV
******NVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCC**************GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLN*******
********EKYVIKKAPPTVYYIPDFITREEE***********************YVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISCGSHTILNFY*************IFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEK*******KPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVEKN**
MTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVEKNEV
***NNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVEKN**
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MTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISCGSHTILNFYEPDRTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNCCSSSPNQMLNRSTRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKVEKNEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query430 2.2.26 [Sep-21-2011]
Q6IQE9234 Alpha-ketoglutarate-depen yes N/A 0.455 0.837 0.563 3e-63
Q8K2U2235 Alpha-ketoglutarate-depen yes N/A 0.448 0.821 0.485 4e-58
Q3KRA9238 Alpha-ketoglutarate-depen no N/A 0.448 0.810 0.475 2e-57
Q5PQ59240 Alpha-ketoglutarate-depen N/A N/A 0.460 0.825 0.467 6e-56
P41498158 Low molecular weight phos no N/A 0.355 0.968 0.413 1e-32
Q9D358158 Low molecular weight phos no N/A 0.355 0.968 0.418 3e-32
P24666158 Low molecular weight phos no N/A 0.351 0.955 0.401 3e-31
Q5REM7158 Low molecular weight phos no N/A 0.351 0.955 0.401 3e-31
P81693158 Low molecular weight phos no N/A 0.353 0.962 0.410 4e-31
P11064158 Low molecular weight phos no N/A 0.353 0.962 0.415 4e-31
>sp|Q6IQE9|ALKB6_DANRE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Danio rerio GN=alkbh6 PE=2 SV=1 Back     alignment and function desciption
 Score =  243 bits (619), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/206 (56%), Positives = 149/206 (72%), Gaps = 10/206 (4%)

Query: 51  VNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPK 110
           V++EKY++K+APPTVYYIPDFI+  EE  LL ++Y  PKPKWTQLS R+LQNWGG+P+PK
Sbjct: 9   VDLEKYIVKEAPPTVYYIPDFISEAEEEFLLQQVYRAPKPKWTQLSGRRLQNWGGLPNPK 68

Query: 111 GMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTIS 170
           GM+AEKLP+WL  Y E+I+ LG F     NHVL+NEY  G+GIMPH DGPLY+PT++TI+
Sbjct: 69  GMLAEKLPDWLLEYTEKISALGAFAGKTANHVLVNEYKPGEGIMPHEDGPLYHPTVTTIT 128

Query: 171 CGSHTILNFY------EPD--RTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDD 222
            GSHT+L+FY      EPD  +T E   + S+ V  +SLLILQDDMY+ Y+HGI    +D
Sbjct: 129 VGSHTLLDFYRPVCQAEPDAPQTEESRYMLSLLVQRKSLLILQDDMYKCYLHGIRGVCED 188

Query: 223 TLSSDILNCCSSSPN--QMLNRSTRA 246
            LS  ++N  S+       L RSTR 
Sbjct: 189 VLSEHVVNISSTGAQVGDTLPRSTRV 214
Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.
Danio rerio (taxid: 7955)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q8K2U2|ALKB6_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Mus musculus GN=Alkbh6 PE=2 SV=2 Back     alignment and function description
>sp|Q3KRA9|ALKB6_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Homo sapiens GN=ALKBH6 PE=1 SV=2 Back     alignment and function description
>sp|Q5PQ59|ALKB6_XENLA Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Xenopus laevis GN=alkbh6 PE=2 SV=1 Back     alignment and function description
>sp|P41498|PPAC_RAT Low molecular weight phosphotyrosine protein phosphatase OS=Rattus norvegicus GN=Acp1 PE=1 SV=3 Back     alignment and function description
>sp|Q9D358|PPAC_MOUSE Low molecular weight phosphotyrosine protein phosphatase OS=Mus musculus GN=Acp1 PE=1 SV=3 Back     alignment and function description
>sp|P24666|PPAC_HUMAN Low molecular weight phosphotyrosine protein phosphatase OS=Homo sapiens GN=ACP1 PE=1 SV=3 Back     alignment and function description
>sp|Q5REM7|PPAC_PONAB Low molecular weight phosphotyrosine protein phosphatase OS=Pongo abelii GN=ACP1 PE=1 SV=3 Back     alignment and function description
>sp|P81693|PPAC_PIG Low molecular weight phosphotyrosine protein phosphatase OS=Sus scrofa GN=ACP1 PE=1 SV=2 Back     alignment and function description
>sp|P11064|PPAC_BOVIN Low molecular weight phosphotyrosine protein phosphatase OS=Bos taurus GN=ACP1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
348541845234 PREDICTED: probable alpha-ketoglutarate- 0.453 0.833 0.531 2e-62
410897523234 PREDICTED: probable alpha-ketoglutarate- 0.451 0.829 0.553 2e-61
53292605234 alpha-ketoglutarate-dependent dioxygenas 0.455 0.837 0.563 2e-61
291241873243 PREDICTED: hypothetical protein [Saccogl 0.448 0.794 0.526 2e-60
47196062234 unnamed protein product [Tetraodon nigro 0.451 0.829 0.539 2e-60
260831338231 hypothetical protein BRAFLDRAFT_202284 [ 0.434 0.809 0.519 4e-59
157134759226 hypothetical protein AaeL_AAEL000465 [Ae 0.446 0.849 0.534 8e-58
387543054266 putative alpha-ketoglutarate-dependent d 0.448 0.725 0.480 4e-57
380796489258 putative alpha-ketoglutarate-dependent d 0.448 0.748 0.480 6e-57
297704512238 PREDICTED: probable alpha-ketoglutarate- 0.448 0.810 0.475 9e-57
>gi|348541845|ref|XP_003458397.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6-like [Oreochromis niloticus] Back     alignment and taxonomy information
 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 151/205 (73%), Gaps = 10/205 (4%)

Query: 52  NVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPKG 111
            ++++V+ +APPT YY+PDFI+ +EES+LL ++Y  PK KWTQLS R+LQNWGG+PHPKG
Sbjct: 10  ELKQFVVSEAPPTAYYVPDFISEDEESYLLQQVYRSPKTKWTQLSGRRLQNWGGLPHPKG 69

Query: 112 MIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTISC 171
           M+ E+LP+WL TY E+I+ LG F     NHVL+NEY  G+GIMPH DGPLY+PT++TIS 
Sbjct: 70  MLGERLPDWLQTYCEKISSLGAFSGKTANHVLVNEYKPGEGIMPHEDGPLYHPTVTTISL 129

Query: 172 GSHTILNFYEPDRTSEGSE--------VCSIFVDARSLLILQDDMYEKYVHGISSKTDDT 223
           GSHT+L+FY P  ++EG+         + S+ V  RSLLILQD+MY++ +HGI  +  DT
Sbjct: 130 GSHTLLDFYTPLSSAEGATPQTEESRFLFSLLVRPRSLLILQDEMYQRLLHGIHGREQDT 189

Query: 224 LSSDILNCCSSS--PNQMLNRSTRA 246
           L+  ++N  ++   P + LNRSTR 
Sbjct: 190 LTKKVVNLSAAGAEPGEDLNRSTRV 214

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota
>gi|410897523|ref|XP_003962248.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|53292605|ref|NP_001005390.1| alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Danio rerio] gi|82184989|sp|Q6IQE9.1|ALKB6_DANRE RecName: Full=Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6; AltName: Full=Alkylated DNA repair protein alkB homolog 6 gi|47939433|gb|AAH71457.1| AlkB, alkylation repair homolog 6 (E. coli) [Danio rerio] Back     alignment and taxonomy information
>gi|291241873|ref|XP_002740837.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|47196062|emb|CAF89344.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|260831338|ref|XP_002610616.1| hypothetical protein BRAFLDRAFT_202284 [Branchiostoma floridae] gi|229295983|gb|EEN66626.1| hypothetical protein BRAFLDRAFT_202284 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|157134759|ref|XP_001656428.1| hypothetical protein AaeL_AAEL000465 [Aedes aegypti] gi|108884305|gb|EAT48530.1| AAEL000465-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|387543054|gb|AFJ72154.1| putative alpha-ketoglutarate-dependent dioxygenase ABH6 isoform 2 [Macaca mulatta] Back     alignment and taxonomy information
>gi|380796489|gb|AFE70120.1| putative alpha-ketoglutarate-dependent dioxygenase ABH6 isoform 2, partial [Macaca mulatta] Back     alignment and taxonomy information
>gi|297704512|ref|XP_002829141.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6 isoform 1 [Pongo abelii] gi|395751025|ref|XP_002829142.2| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6 isoform 2 [Pongo abelii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
ZFIN|ZDB-GENE-060407-1234 alkbh6 "alkB, alkylation repai 0.453 0.833 0.565 5e-60
UNIPROTKB|G3V9E2238 Alkbh6 "Putative uncharacteriz 0.448 0.810 0.490 5.5e-54
MGI|MGI:2142037235 Alkbh6 "alkB, alkylation repai 0.448 0.821 0.490 8.9e-54
UNIPROTKB|Q3KRA9238 ALKBH6 "Alpha-ketoglutarate-de 0.448 0.810 0.485 1.5e-53
UNIPROTKB|F1RLH4238 ALKBH6 "Uncharacterized protei 0.448 0.810 0.490 1.9e-53
UNIPROTKB|F1N5I3266 ALKBH6 "Uncharacterized protei 0.448 0.725 0.490 3.8e-53
UNIPROTKB|F1PR83266 ALKBH6 "Uncharacterized protei 0.448 0.725 0.485 8e-53
UNIPROTKB|J9P9D3280 ALKBH6 "Uncharacterized protei 0.448 0.689 0.485 8e-53
FB|FBgn0032259228 CG6144 [Drosophila melanogaste 0.441 0.833 0.504 1.9e-51
WB|WBGene00007202231 B0564.2 [Caenorhabditis elegan 0.448 0.835 0.407 9.9e-39
ZFIN|ZDB-GENE-060407-1 alkbh6 "alkB, alkylation repair homolog 6 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 116/205 (56%), Positives = 149/205 (72%)

Query:    51 VNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSVPKPKWTQLSNRKLQNWGGIPHPK 110
             V++EKY++K+APPTVYYIPDFI+  EE  LL ++Y  PKPKWTQLS R+LQNWGG+P+PK
Sbjct:     9 VDLEKYIVKEAPPTVYYIPDFISEAEEEFLLQQVYRAPKPKWTQLSGRRLQNWGGLPNPK 68

Query:   111 GMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPTISTIS 170
             GM+AEKLP+WL  Y E+I+ LG F     NHVL+NEY  G+GIMPH DGPLY+PT++TI+
Sbjct:    69 GMLAEKLPDWLLEYTEKISALGAFAGKTANHVLVNEYKPGEGIMPHEDGPLYHPTVTTIT 128

Query:   171 CGSHTILNFY------EPD--RTSEGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDD 222
              GSHT+L+FY      EPD  +T E   + S+ V  +SLLILQDDMY+ Y+HGI    +D
Sbjct:   129 VGSHTLLDFYRPVCQAEPDAPQTEESRYMLSLLVQRKSLLILQDDMYKCYLHGIRGVCED 188

Query:   223 TLSSDILNCCSSSPN--QMLNRSTR 245
              LS  ++N  S+       L RSTR
Sbjct:   189 VLSEHVVNISSTGAQVGDTLPRSTR 213
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
UNIPROTKB|G3V9E2 Alkbh6 "Putative uncharacterized protein LOC292780" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2142037 Alkbh6 "alkB, alkylation repair homolog 6 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3KRA9 ALKBH6 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RLH4 ALKBH6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5I3 ALKBH6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PR83 ALKBH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P9D3 ALKBH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0032259 CG6144 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00007202 B0564.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6IQE9ALKB6_DANRE1, ., 1, 4, ., 1, 1, ., -0.56310.45580.8376yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.30.691
3rd Layer3.1.3.480.737

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
cd00115141 cd00115, LMWPc, Low molecular weight phosphatase f 1e-44
smart00226134 smart00226, LMWPc, Low molecular weight phosphatas 2e-31
pfam01451138 pfam01451, LMWPc, Low molecular weight phosphotyro 4e-30
COG0394139 COG0394, Wzb, Protein-tyrosine-phosphatase [Signal 3e-29
PRK11391144 PRK11391, etp, phosphotyrosine-protein phosphatase 2e-10
PRK10126147 PRK10126, PRK10126, tyrosine phosphatase; Provisio 2e-09
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 2e-06
>gnl|CDD|238063 cd00115, LMWPc, Low molecular weight phosphatase family; Back     alignment and domain information 
 Score =  152 bits (385), Expect = 1e-44
 Identities = 64/176 (36%), Positives = 84/176 (47%), Gaps = 36/176 (20%)

Query: 249 KAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSA 308
           K VLFVC GNICRSPMA  +F++L    +                           VDSA
Sbjct: 1   KKVLFVCTGNICRSPMAEAIFRHLAPKLD-------------------------IEVDSA 35

Query: 309 GTGDWHVGHPADSRARDVLAKHNVP-CQHQARQVIEEDFGKFDYLFVMDESNFANVKAFE 367
           GT  WHVG   D RA  VLA+H +    H+ARQ+ E+DF +FD +  MDESN A +    
Sbjct: 36  GTSGWHVGGRPDPRAIAVLAEHGIDISGHRARQLTEDDFDEFDLIITMDESNLAELLE-- 93

Query: 368 KRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLN 423
                      AK+  LG+Y   G + V DPYY    +AF+  Y+    + +  L 
Sbjct: 94  -----PPPGGRAKVELLGEYA--GDREVPDPYYGSL-EAFEEVYDLIEEAIKALLK 141

Length = 141
>gnl|CDD|197586 smart00226, LMWPc, Low molecular weight phosphatase family Back     alignment and domain information
>gnl|CDD|201802 pfam01451, LMWPc, Low molecular weight phosphotyrosine protein phosphatase Back     alignment and domain information
>gnl|CDD|223471 COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|138553 PRK11391, etp, phosphotyrosine-protein phosphatase; Provisional Back     alignment and domain information
>gnl|CDD|182256 PRK10126, PRK10126, tyrosine phosphatase; Provisional Back     alignment and domain information
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 430
KOG3200|consensus224 100.0
KOG3217|consensus159 100.0
PRK11391144 etp phosphotyrosine-protein phosphatase; Provision 100.0
PRK10126147 tyrosine phosphatase; Provisional 100.0
COG0394139 Wzb Protein-tyrosine-phosphatase [Signal transduct 100.0
smart00226140 LMWPc Low molecular weight phosphatase family. 100.0
PF01451138 LMWPc: Low molecular weight phosphotyrosine protei 100.0
cd00115141 LMWPc Substituted updates: Aug 22, 2001 100.0
PRK13530133 arsenate reductase; Provisional 99.97
TIGR02689126 ars_reduc_gluta arsenate reductase, glutathione/gl 99.97
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 99.97
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 99.96
TIGR02691129 arsC_pI258_fam arsenate reductase (thioredoxin). T 99.96
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 99.93
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.88
KOG4176|consensus323 99.86
KOG3959|consensus306 99.79
COG4551109 Predicted protein tyrosine phosphatase [General fu 99.01
KOG2731|consensus378 98.29
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 97.61
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 97.47
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 96.85
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 95.4
PLN00052310 prolyl 4-hydroxylase; Provisional 94.98
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 93.48
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 93.3
KOG3200|consensus224 91.78
KOG2424|consensus195 91.55
KOG1591|consensus289 89.78
PF04722195 Ssu72: Ssu72-like protein; InterPro: IPR006811 The 89.48
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 87.23
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 81.31
>KOG3200|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-40  Score=289.88  Aligned_cols=201  Identities=49%  Similarity=0.876  Sum_probs=180.5

Q ss_pred             cccccccccCCCCceeeccCCcChHHHHHHHHHHhhcccccCCCCccccccccccCCCceEEeCCCCCHHHHHHHHHHHh
Q psy4895           6 VNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIYSHNLLMTGNNVNVEKYVIKKAPPTVYYIPDFITREEESHLLNKIY   85 (430)
Q Consensus         6 ~~~~~~~~~~~p~~~~yip~fi~~~ee~~ll~~i~~~~~~~~~~~~~l~~~~~~~lp~Gl~~ipdfls~~ee~~Ll~~l~   85 (430)
                      +++++|+|++.| +++|||||||+|||+.+|++|+++|.   +                                     
T Consensus         1 m~~~~F~V~~~p-t~~YIPnfIt~EEe~~~lshIe~ap~---p-------------------------------------   39 (224)
T KOG3200|consen    1 MNIKKFIVKSAP-TMIYIPNFITEEEENLYLSHIENAPQ---P-------------------------------------   39 (224)
T ss_pred             CCcceeEecccc-eEEEcCCccChHHHHHHHHHHhcCCC---c-------------------------------------
Confidence            368899999999 89999999999999999999988877   2                                     


Q ss_pred             cCCCCcccccccceEEEecCcCCCCCCCCCCChhHHHHHHHHHHhcCCCCCCCCceEEEeeecCCCCCCCCCCCCCCCCc
Q psy4895          86 SVPKPKWTQLSNRKLQNWGGIPHPKGMIAEKLPEWLDTYLERINQLGVFESVKPNHVLINEYLAGQGIMPHFDGPLYYPT  165 (430)
Q Consensus        86 ~~~~~~w~~~~~rr~~~~G~~~~~~~~~~~~~P~~l~~l~~rl~~~~~~~~~~pn~~lvN~Y~~G~~I~~H~D~~~~~~~  165 (430)
                           +|+.+.+||+|+||+..+.++++++.+|+||+.+.+++...++|++ ..|+++||+|.||+||+||.|.+.|-+.
T Consensus        40 -----kW~~L~NRRLqNyGGvvh~~glipeelP~wLq~~v~kinnlglF~s-~~NHVLVNeY~pgqGImPHtDGPaf~pi  113 (224)
T KOG3200|consen   40 -----KWRVLANRRLQNYGGVVHKTGLIPEELPPWLQYYVDKINNLGLFKS-PANHVLVNEYLPGQGIMPHTDGPAFHPI  113 (224)
T ss_pred             -----hhHHHHhhhhhhcCCccccCCcCccccCHHHHHHHHHhhcccccCC-CcceeEeecccCCCCcCcCCCCCcccce
Confidence                 5888889999999999999999999999999999999999999966 9999999999999999999999999999


Q ss_pred             eEEEcCCCceEEEEecCCCCC----------CCCeeEEEEeCCCeEEEecchhhccccccccCCCCCCCccccccc--cC
Q psy4895         166 ISTISCGSHTILNFYEPDRTS----------EGSEVCSIFVDARSLLILQDDMYEKYVHGISSKTDDTLSSDILNC--CS  233 (430)
Q Consensus       166 Ia~lSLgs~~~m~f~~~~~~~----------~~~~~~~l~L~~gSlliMsG~aR~~w~H~I~~~~~d~~~~~~~~~--~~  233 (430)
                      |++|||||+++|.|....+..          .....+.+.|+++|++|+.++++.+|.|||.....|.++..++|+  |.
T Consensus       114 VstiSlGsh~vldf~~p~r~e~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~  193 (224)
T KOG3200|consen  114 VSTISLGSHTVLDFYDPVRQEVNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACS  193 (224)
T ss_pred             EEEEecCCceEEecccccccccCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhcc
Confidence            999999999999998743211          246778999999999999999999999999999999988877775  43


Q ss_pred             -CCCCcccccccccccceEEE
Q psy4895         234 -SSPNQMLNRSTRAGKKAVLF  253 (430)
Q Consensus       234 -~~~~~~l~r~~R~s~t~~lf  253 (430)
                       ...|..+.|++|+|+|.+++
T Consensus       194 s~k~Gd~lvr~tRvSLTiR~V  214 (224)
T KOG3200|consen  194 SRKDGDKLVRQTRVSLTIRLV  214 (224)
T ss_pred             ccCCcceeeecceeEEEEecc
Confidence             48888899999999987654

>KOG3217|consensus Back     alignment and domain information
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional Back     alignment and domain information
>PRK10126 tyrosine phosphatase; Provisional Back     alignment and domain information
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00226 LMWPc Low molecular weight phosphatase family Back     alignment and domain information
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity Back     alignment and domain information
>cd00115 LMWPc Substituted updates: Aug 22, 2001 Back     alignment and domain information
>PRK13530 arsenate reductase; Provisional Back     alignment and domain information
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin) Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4176|consensus Back     alignment and domain information
>KOG3959|consensus Back     alignment and domain information
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only] Back     alignment and domain information
>KOG2731|consensus Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>KOG3200|consensus Back     alignment and domain information
>KOG2424|consensus Back     alignment and domain information
>KOG1591|consensus Back     alignment and domain information
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
2p4u_A168 Crystal Structure Of Acid Phosphatase 1 (Acp1) From 6e-34
5pnt_A157 Crystal Structure Of A Human Low Molecular Weight P 2e-32
1dg9_A157 Crystal Structure Of Bovine Low Molecular Weight Pt 3e-32
1c0e_A157 Active Site S19a Mutant Of Bovine Heart Phosphotyro 8e-32
1xww_A157 Crystal Structure Of Human B-Form Low Molecular Wei 2e-31
2cwd_A161 Crystal Structure Of Tt1001 Protein From Thermus Th 9e-21
1d1p_A160 Crystal Structure Of A Yeast Low Molecular Weight P 1e-20
1d1q_A161 Crystal Structure Of A Yeast Low Molecular Weight P 1e-19
1d2a_A160 Crystal Structure Of A Yeast Low Molecular Weight P 1e-19
4etm_A173 Crystal Structure Of Yfkj From Bacillus Subtilis Le 4e-18
3rof_A158 Crystal Structure Of The S. Aureus Protein Tyrosine 3e-16
1p8a_A146 Solution Structure Of The Low Molecular Weight Prot 3e-15
3ido_A178 Crystal Structure Of Protein Tyrosine Phosphatase F 3e-15
3jvi_A161 Product State Mimic Crystal Structure Of Protein Ty 4e-15
1u2p_A163 Crystal Structure Of Mycobacterium Tuberculosis Low 1e-14
2luo_A164 Nmr Solution Structure Of Apo-Mptpa Length = 164 1e-14
2gi4_A156 Solution Structure Of The Low Molecular Weight Prot 4e-12
3tht_A345 Crystal Structure And Rna Binding Properties Of The 3e-07
3thp_A345 Crystal Structure And Rna Binding Properties Of The 5e-06
4egs_A180 Crystal Structure Analysis Of Low Molecular Weight 6e-06
2fek_A167 Structure Of A Protein Tyrosine Phosphatase Length 2e-05
4eti_A184 Crystal Structure Of Ywle From Bacillus Subtilis Le 1e-04
1zgg_A150 Solution Structure Of A Low Molecular Weight Protei 2e-04
2wja_A168 Crystal Structure Of The Tyrosine Phosphatase Wzb F 8e-04
>pdb|2P4U|A Chain A, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus Musculus Length = 168 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 96/179 (53%), Gaps = 26/179 (14%)
Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
           G K+VLFVCLGNICRSP+A  VF+ L+                 D  V     +D W +D
Sbjct: 7   GSKSVLFVCLGNICRSPIAEAVFRKLVT----------------DEKV-----SDNWAID 45
Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
           S+   DW+VG P D RA   L  H +   H+ARQ+ +EDF  FDY+  MDESN  ++   
Sbjct: 46  SSAVSDWNVGRPPDPRAVSCLRNHGISTAHKARQITKEDFATFDYILCMDESNLRDL--- 102
Query: 367 EKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
             R   Q     AKI  LG YDP+   I+EDPYY    D F++ Y+ C R C+ FL K 
Sbjct: 103 -NRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSD-FEVVYQQCLRCCKAFLEKT 159
>pdb|5PNT|A Chain A, Crystal Structure Of A Human Low Molecular Weight Phosphotyrosyl Phosphatase. Implications For Substrate Specificity Length = 157 Back     alignment and structure
>pdb|1DG9|A Chain A, Crystal Structure Of Bovine Low Molecular Weight Ptpase Complexed With Hepes Length = 157 Back     alignment and structure
>pdb|1C0E|A Chain A, Active Site S19a Mutant Of Bovine Heart Phosphotyrosyl Phosphatase Length = 157 Back     alignment and structure
>pdb|1XWW|A Chain A, Crystal Structure Of Human B-Form Low Molecular Weight Phosphotyrosyl Phosphatase At 1.6 Angstrom Resolution Length = 157 Back     alignment and structure
>pdb|2CWD|A Chain A, Crystal Structure Of Tt1001 Protein From Thermus Thermophilus Hb8 Length = 161 Back     alignment and structure
>pdb|1D1P|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein Tyrosine Phosphatase (Ltp1) Length = 160 Back     alignment and structure
>pdb|1D1Q|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein Tyrosine Phosphatase (Ltp1) Complexed With The Substrate Pnpp Length = 161 Back     alignment and structure
>pdb|1D2A|A Chain A, Crystal Structure Of A Yeast Low Molecular Weight Protein Tyrosine Phosphatase (Ltp1) Complexed With The Activator Adenine Length = 160 Back     alignment and structure
>pdb|4ETM|A Chain A, Crystal Structure Of Yfkj From Bacillus Subtilis Length = 173 Back     alignment and structure
>pdb|3ROF|A Chain A, Crystal Structure Of The S. Aureus Protein Tyrosine Phosphatase Ptpa Length = 158 Back     alignment and structure
>pdb|1P8A|A Chain A, Solution Structure Of The Low Molecular Weight Protein Tyrosine Phosphatase From Tritrichomonas Foetus Length = 146 Back     alignment and structure
>pdb|3IDO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase From Entamoeba Histolytica With A Phosphotyrosine Crude Mimic Hepes Molecule In The Active Site Length = 178 Back     alignment and structure
>pdb|3JVI|A Chain A, Product State Mimic Crystal Structure Of Protein Tyrosine Phosphatase From Entamoeba Histolytica Length = 161 Back     alignment and structure
>pdb|1U2P|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Low Molecular Protein Tyrosine Phosphatase (Mptpa) At 1.9a Resolution Length = 163 Back     alignment and structure
>pdb|2LUO|A Chain A, Nmr Solution Structure Of Apo-Mptpa Length = 164 Back     alignment and structure
>pdb|2GI4|A Chain A, Solution Structure Of The Low Molecular Weight Protein Tyrosine Phosphatase From Campylobacter Jejuni Length = 156 Back     alignment and structure
>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna Hypermodification, Northeast Structural Genomics Consortium Target Hr5601b Length = 345 Back     alignment and structure
>pdb|3THP|A Chain A, Crystal Structure And Rna Binding Properties Of The RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna Hypermodification, Northeast Structural Genomics Consortium Target Hr5601b Length = 345 Back     alignment and structure
>pdb|4EGS|A Chain A, Crystal Structure Analysis Of Low Molecular Weight Protein Tyrosine Phosphatase From T. Tengcongensis Length = 180 Back     alignment and structure
>pdb|2FEK|A Chain A, Structure Of A Protein Tyrosine Phosphatase Length = 167 Back     alignment and structure
>pdb|4ETI|A Chain A, Crystal Structure Of Ywle From Bacillus Subtilis Length = 184 Back     alignment and structure
>pdb|1ZGG|A Chain A, Solution Structure Of A Low Molecular Weight Protein Tyrosine Phosphatase From Bacillus Subtilis Length = 150 Back     alignment and structure
>pdb|2WJA|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From Escherichia Coli K30 In Complex With Phosphate. Length = 168 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
3n8i_A157 Low molecular weight phosphotyrosine protein PHOS; 4e-68
3jvi_A161 Protein tyrosine phosphatase; niaid, ssgcid, seatt 2e-65
1d1q_A161 Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-be 5e-65
2cwd_A161 Low molecular weight phosphotyrosine protein PHOS; 3e-62
2gi4_A156 Possible phosphotyrosine protein phosphatase; low 4e-60
3rof_A158 Low molecular weight protein-tyrosine-phosphatase; 5e-60
1p8a_A146 Protein tyrosine phosphatase; hydrolase; NMR {Trit 6e-60
1u2p_A163 Ptpase, low molecular weight protein-tyrosine- pho 2e-59
4etn_A184 LMPTP, low molecular weight protein-tyrosine-phosp 9e-57
2fek_A167 Low molecular weight protein-tyrosine- phosphatase 1e-56
2wmy_A150 WZB, putative acid phosphatase WZB; hydrolase; 2.2 8e-56
2wja_A168 Putative acid phosphatase WZB; hydrolase; 2.50A {E 4e-55
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 2e-36
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 8e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
3rh0_A148 Arsenate reductase; oxidoreductase; 1.72A {Coryneb 3e-09
3t38_A213 Arsenate reductase; low molecular weight tyrosine 8e-09
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 1e-08
1y1l_A124 Arsenate reductase (ARSC); detoxification, cadmium 1e-08
1jl3_A139 Arsenate reductase; alpha-beta fold, PTP-loop, oxi 1e-07
2l17_A134 Synarsc, arsenate reductase; alpha/beta sandwich, 2e-07
1jf8_A131 Arsenate reductase; ptpase I fold, P-loop, sulfini 3e-07
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A Length = 157 Back     alignment and structure
 Score =  212 bits (542), Expect = 4e-68
 Identities = 71/180 (39%), Positives = 94/180 (52%), Gaps = 26/180 (14%)

Query: 246 AGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTV 305
              K+VLFVCLGNICRSP+A  VF+ L+  +N ++ W VDSA T                
Sbjct: 3   QATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATS--------------- 47

Query: 306 DSAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKA 365
                  + +G+P D R +  + +H +P  H ARQ+ +EDF  FDY+  MDESN  ++  
Sbjct: 48  ------GYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDL-- 99

Query: 366 FEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
              R   Q     AKI  LG YDP+   I+EDPYY    D F+  Y+ C R C  FL K 
Sbjct: 100 --NRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSD-FETVYQQCVRCCRAFLEKA 156
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A* Length = 161 Back     alignment and structure
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A* Length = 161 Back     alignment and structure
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus} Length = 161 Back     alignment and structure
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni} Length = 156 Back     alignment and structure
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus} Length = 158 Back     alignment and structure
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1 Length = 146 Back     alignment and structure
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A Length = 163 Back     alignment and structure
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A Length = 184 Back     alignment and structure
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12} Length = 167 Back     alignment and structure
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli} Length = 150 Back     alignment and structure
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli} Length = 168 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum} Length = 148 Back     alignment and structure
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum} Length = 213 Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1 Length = 124 Back     alignment and structure
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B Length = 139 Back     alignment and structure
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A Length = 134 Back     alignment and structure
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A Length = 131 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
4etm_A173 LMPTP, low molecular weight protein-tyrosine-phosp 100.0
3jvi_A161 Protein tyrosine phosphatase; niaid, ssgcid, seatt 100.0
3n8i_A157 Low molecular weight phosphotyrosine protein PHOS; 100.0
2cwd_A161 Low molecular weight phosphotyrosine protein PHOS; 100.0
2gi4_A156 Possible phosphotyrosine protein phosphatase; low 100.0
1u2p_A163 Ptpase, low molecular weight protein-tyrosine- pho 100.0
1d1q_A161 Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-be 100.0
3rof_A158 Low molecular weight protein-tyrosine-phosphatase; 100.0
4etn_A184 LMPTP, low molecular weight protein-tyrosine-phosp 100.0
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 100.0
2wmy_A150 WZB, putative acid phosphatase WZB; hydrolase; 2.2 100.0
1p8a_A146 Protein tyrosine phosphatase; hydrolase; NMR {Trit 100.0
2fek_A167 Low molecular weight protein-tyrosine- phosphatase 100.0
4egs_A180 Ribose 5-phosphate isomerase RPIB; tyrosine phosph 100.0
2wja_A168 Putative acid phosphatase WZB; hydrolase; 2.50A {E 100.0
3rh0_A148 Arsenate reductase; oxidoreductase; 1.72A {Coryneb 100.0
2l17_A134 Synarsc, arsenate reductase; alpha/beta sandwich, 100.0
1jf8_A131 Arsenate reductase; ptpase I fold, P-loop, sulfini 100.0
1jl3_A139 Arsenate reductase; alpha-beta fold, PTP-loop, oxi 100.0
1y1l_A124 Arsenate reductase (ARSC); detoxification, cadmium 99.98
3t38_A213 Arsenate reductase; low molecular weight tyrosine 99.97
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 99.97
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 99.96
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 99.96
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 97.11
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 96.86
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 96.66
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 96.27
3lfm_A495 Protein FTO; FAT MASS and obesity associated (FTO) 95.56
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 93.67
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 91.34
4h3k_B214 RNA polymerase II subunit A C-terminal domain PHO 89.29
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 86.12
2kyr_A111 Fructose-like phosphotransferase enzyme IIB compo; 84.13
2m1z_A106 LMO0427 protein; homolog PTS system IIB component, 82.41
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=4.4e-41  Score=303.87  Aligned_cols=155  Identities=36%  Similarity=0.685  Sum_probs=138.6

Q ss_pred             cccccceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHH
Q psy4895         244 TRAGKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRA  323 (430)
Q Consensus       244 ~R~s~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a  323 (430)
                      .|-++.+||||||||+|||||||+|||+++.++|+.+                     .|+|+||||.+||.|+++||.|
T Consensus        14 ~~~~M~kVLFVCtGNiCRSpmAE~i~r~~~~~~gl~~---------------------~~~v~SAGt~~~~~G~~~d~~a   72 (173)
T 4etm_A           14 GRGSMISVLFVCLGNICRSPMAEAIFRDLAAKKGLEG---------------------KIKADSAGIGGWHIGNPPHEGT   72 (173)
T ss_dssp             CCSSCEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTT---------------------TEEEEEEESSCTTTTCCCCHHH
T ss_pred             CCCCccEEEEEeCCcchhhHHHHHHHHHHHHHcCCCC---------------------ceEEeccccccCCCCCCCCHHH
Confidence            4557899999999999999999999999999888764                     4678888888899999999999


Q ss_pred             HHHHHhCCCCCC-CcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCC-CCccCCCCCC
Q psy4895         324 RDVLAKHNVPCQ-HQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKG-VKIVEDPYYS  401 (430)
Q Consensus       324 ~~~L~e~Gid~~-~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~-~~di~DP~~~  401 (430)
                      +++|+++|||++ |++++++++|+.+||||||||++|++.+..++|.      ....|+.+|.+|.+.. ..||+||||+
T Consensus        73 ~~~l~~~Gid~s~h~ar~l~~~d~~~~DlIl~Md~~~~~~l~~~~p~------~~~~kv~~l~~~~~~~~~~dVpDPyy~  146 (173)
T 4etm_A           73 QEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGF------KNTSHIKRLLDYVEDSDLADVPDPYYT  146 (173)
T ss_dssp             HHHHHHTTCCCTTCCCCBCCHHHHHHCSEEEESSHHHHHHHHHHHTT------SCCTTEEEGGGGSTTCSCCSCCCHHHH
T ss_pred             HHHHHHCCccccCCccccCCHhhcCCCCEEEEeCchHHHHHHHHcCc------cchhheeeeccccccCCCCcCCCCCCC
Confidence            999999999997 9999999999999999999999999999988873      2357899998887653 4689999987


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4895         402 RAKDAFDICYEHCYRSCEQFLNKVEKN  428 (430)
Q Consensus       402 ~~~~~f~~~~~~I~~~i~~ll~~l~~~  428 (430)
                      +   +|+++|++|+++|+.||++|+++
T Consensus       147 ~---~Fe~v~~~I~~~~~~ll~~l~~e  170 (173)
T 4etm_A          147 G---NFEEVCQLIKTGCEQLLASIQKE  170 (173)
T ss_dssp             C---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHHHHHHHHHHHh
Confidence            5   69999999999999999999875
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A* Back     alignment and structure
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A Back     alignment and structure
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus} Back     alignment and structure
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni} Back     alignment and structure
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A Back     alignment and structure
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A* Back     alignment and structure
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus} Back     alignment and structure
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli} Back     alignment and structure
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1 Back     alignment and structure
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12} Back     alignment and structure
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli} Back     alignment and structure
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum} Back     alignment and structure
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A Back     alignment and structure
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A Back     alignment and structure
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B Back     alignment and structure
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1 Back     alignment and structure
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli} Back     alignment and structure
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 430
d1dg9a_157 c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos tauru 2e-31
d1d1qa_159 c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast 5e-29
d1p8aa_146 c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas 3e-26
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 6e-12
d1jl3a_137 c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus su 1e-11
d1jf8a_130 c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococ 2e-10
d1y1la_124 c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglob 7e-10
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 1e-09
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 9913]} Length = 157 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  115 bits (288), Expect = 2e-31
 Identities = 73/179 (40%), Positives = 91/179 (50%), Gaps = 26/179 (14%)

Query: 247 GKKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVD 306
             K+VLFVCLGNICRSP+A  VF+ L+  +                     N +D W +D
Sbjct: 4   VTKSVLFVCLGNICRSPIAEAVFRKLVTDQ---------------------NISDNWVID 42

Query: 307 SAGTGDWHVGHPADSRARDVLAKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAF 366
           S    DW+VG   D RA   L  H +   H+ARQV +EDF  FDY+  MDESN  ++   
Sbjct: 43  SGAVSDWNVGRSPDPRAVSCLRNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDL--- 99

Query: 367 EKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAFDICYEHCYRSCEQFLNKV 425
             R   Q     AKI  LG YDP+   I+EDPYY      F+  Y+ C R C  FL KV
Sbjct: 100 -NRKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGND-ADFETVYQQCVRCCRAFLEKV 156
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 159 Back     information, alignment and structure
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]} Length = 146 Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]} Length = 137 Back     information, alignment and structure
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]} Length = 130 Back     information, alignment and structure
>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus fulgidus [TaxId: 2234]} Length = 124 Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
d1dg9a_157 Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 991 100.0
d1d1qa_159 Tyrosine phosphatase {Baker's yeast (Saccharomyces 100.0
d1p8aa_146 Tyrosine phosphatase {Tritrichomonas foetus [TaxId 100.0
d1jf8a_130 Arsenate reductase ArsC {Staphylococcus aureus [Ta 99.97
d1y1la_124 Arsenate reductase ArsC {Archaeoglobus fulgidus [T 99.97
d1jl3a_137 Arsenate reductase ArsC {Bacillus subtilis [TaxId: 99.97
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 99.96
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 99.96
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.0
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-37  Score=271.92  Aligned_cols=153  Identities=46%  Similarity=0.889  Sum_probs=136.7

Q ss_pred             cceEEEeecCCCCCChhHHHHHHHHHHhccccccceeccCCCCCcccccccCCCceEEeecccCCCCCCCCCCHHHHHHH
Q psy4895         248 KKAVLFVCLGNICRSPMAACVFKYLINARNQADRWTVDSAGTGDWHVQHVNQADRWTVDSAGTGDWHVGHPADSRARDVL  327 (430)
Q Consensus       248 ~t~~lf~c~~N~~RS~mAea~~~~~~~~~~~~~~~~~~sag~~~~~~~~~~~~~~~~v~SAGt~p~~~g~~~~~~a~~~L  327 (430)
                      .++||||||||+|||||||+|||+++.++|+++                     .+.|.||||.+++.|.++++.++++|
T Consensus         5 ~k~ILFVCtgN~cRSpmAEal~~~~~~~~~l~~---------------------~~~v~SaG~~~~~~g~~~~~~a~~~l   63 (157)
T d1dg9a_           5 TKSVLFVCLGNICRSPIAEAVFRKLVTDQNISD---------------------NWVIDSGAVSDWNVGRSPDPRAVSCL   63 (157)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGG---------------------GEEEEEEESCSTTTTCCCCHHHHHHH
T ss_pred             CCeEEEEeCCcHHHHHHHHHHHHHHHHhcCCCc---------------------cceEeecccccccCCCcCCHHHHHHH
Confidence            368999999999999999999999999887754                     46788888888888999999999999


Q ss_pred             HhCCCCCCCcccccchhhhccCCEEEEeCcccHHHHHHHHHHhhhcCCCCCCeEEEecccCCCCCCccCCCCCCCchHHH
Q psy4895         328 AKHNVPCQHQARQVIEEDFGKFDYLFVMDESNFANVKAFEKRAVKQGIKPNAKILYLGDYDPKGVKIVEDPYYSRAKDAF  407 (430)
Q Consensus       328 ~e~Gid~~~~~~~l~~~d~~~~D~Vi~m~~~~~~~l~~~~P~~~~~~~~~~~kv~~~~~~~p~~~~di~DP~~~~~~~~f  407 (430)
                      +++|+|++|++++++.+++.++|+||+||+.|++.+.+.+|...    ....|+.+|+.|++....+|+|||+++ .++|
T Consensus        64 ~~~gid~~~~~~~~~~~~~~~~DlIl~m~~~~~~~l~~~~p~~~----~~~~kv~~l~~~~~~~~~~I~DPy~~~-~~~f  138 (157)
T d1dg9a_          64 RNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVK----NCRAKIELLGSYDPQKQLIIEDPYYGN-DADF  138 (157)
T ss_dssp             HHTTCCCCCCCCBCCTTHHHHCSEEEESSHHHHHHHHHHHTTCT----TCCCEEEEGGGGCTTCCCCCCCCTTSC-HHHH
T ss_pred             HhcCcccccchhhhhHHhhhcccccccchHHHHHHHHHhCCccc----cchheeeehhhhCCCCCCcCCCCCCCC-HHHH
Confidence            99999999999999999999999999999999999988887421    234689999999987667899999985 8899


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy4895         408 DICYEHCYRSCEQFLNKVE  426 (430)
Q Consensus       408 ~~~~~~I~~~i~~ll~~l~  426 (430)
                      ++|+++|+.+|+.|+++|+
T Consensus       139 ~~~~~~I~~~v~~ll~~lk  157 (157)
T d1dg9a_         139 ETVYQQCVRCCRAFLEKVR  157 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999985
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure