Psyllid ID: psy4946

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MLSNTFDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGTSPNSSP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mlsntfdvssmdsrststarspgrynmgtleasrldDEHKLIARYAAKLAAEnrsvgkapsegslsldTSRAQRELVSQLESKNREIMREIARLRRQQELEgvcasgfednpALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKthqgtspnssp
Flexible Loop (DISEMBL)
mlsntfdvssmdsrststarspgrynmgtleasrlddEHKLIARYAAKLaaenrsvgkapsegslsldtsraQRELVSQLESKNREIMREIARLRRQQELEgvcasgfednpALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRllkthqgtspnssp
Low Complexity Region (SEG)
MLSNTFDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGTSPNSSP
Disordered region (IsUnstruct)
*****************************************IARY************************************************************************************************************************
Disordered Region (DISOPRED)
**************************************HKLIAR*************************************************************************************************LMVQLEG*****************
Disordered Region (DISEMBL)
*********************PGRYNMGTLEASRLDDEHKLIARYAAKLAA*************************VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT**********
Disordered Region (DISPRO)
**********************************LDDEHKLIARYAAKLAA***********GSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELE*******EDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSNTFDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELxxxxxxxxxxxxxxxxxxxxxxxxEGVCASGFEDNPALMSExxxxxxxxxxxxxxxxxxxxxRRHLMVQLEGLMRLLKTHQGTSPNSSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
P84060	654	Dystrobrevin beta OS=Ratt	yes	N/A	0.806	0.203	0.529	7e-33
O70585	659	Dystrobrevin beta OS=Mus	yes	N/A	0.806	0.201	0.529	9e-33
Q9Y4J8	743	Dystrobrevin alpha OS=Hom	no	N/A	0.824	0.183	0.528	1e-30
O60941	627	Dystrobrevin beta OS=Homo	no	N/A	0.806	0.212	0.517	5e-30
Q9D2N4	746	Dystrobrevin alpha OS=Mus	no	N/A	0.824	0.182	0.503	8e-29
Q9Y048	590	Dystrobrevin-1 OS=Caenorh	yes	N/A	0.715	0.2	0.380	6e-12
Q5GN48	3674	Dystrophin OS=Sus scrofa	no	N/A	0.751	0.033	0.311	8e-05
Q0KI50	1854	Dystrophin, isoform D OS=	no	N/A	0.696	0.062	0.294	0.0001
O97592	3680	Dystrophin OS=Canis famil	no	N/A	0.751	0.033	0.318	0.0001
Q7YU29	1051	Dystrophin, isoform E OS=	no	N/A	0.696	0.109	0.294	0.0002

>sp|P84060|DTNB_RAT Dystrobrevin beta OS=Rattus norvegicus GN=Dtnb PE=2 SV=2

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 33  SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
           SRLD+EH+LIARYAA+LAAE  ++ + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct: 396 SRLDEEHRLIARYAARLAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQ 455

Query: 93  RLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
           RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLEGLM+
Sbjct: 456 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 515

Query: 152 LLKTHQGTSPNSSP 165
           LLK     SP++SP
Sbjct: 516 LLKAQATGSPHTSP 529

Rattus norvegicus (taxid: 10116)

>sp|O70585|DTNB_MOUSE Dystrobrevin beta OS=Mus musculus GN=Dtnb PE=1 SV=3

 Score =  139 bits (349), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 33  SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
           SRLD+EH+LIARYAA+LAAE  ++ + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct: 396 SRLDEEHRLIARYAARLAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQ 455

Query: 93  RLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
           RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLEGLM+
Sbjct: 456 RLRLEHEQASQPTPEKAQQNPMLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 515

Query: 152 LLKTHQGTSPNSSP 165
           LLK     SP++SP
Sbjct: 516 LLKAQATGSPHTSP 529

Mus musculus (taxid: 10090)

>sp|Q9Y4J8|DTNA_HUMAN Dystrobrevin alpha OS=Homo sapiens GN=DTNA PE=1 SV=2

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 103/142 (72%), Gaps = 6/142 (4%)

Query: 30  LEAS-RLDDEHKLIARYAAKLAAENRSVG----KAPSEGSLSLDTSRAQRELVSQLESKN 84
           LE+S RLD+EH+LIARYAA+LAAE+ S      ++  + S ++D ++ QR+L+++LE+KN
Sbjct: 424 LESSNRLDEEHRLIARYAARLAAESSSSQPPQQRSAPDISFTIDANKQQRQLIAELENKN 483

Query: 85  REIMREIARLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLM 143
           REI++EI RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LM
Sbjct: 484 REILQEIQRLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELM 543

Query: 144 VQLEGLMRLLKTHQGTSPNSSP 165
           VQLEGLM+LLKT    SP SSP
Sbjct: 544 VQLEGLMKLLKTQGAGSPRSSP 565

May be involved in the formation and stability of synapses as well as being involved in the clustering of nicotinic acetylcholine receptors.

Homo sapiens (taxid: 9606)

>sp|O60941|DTNB_HUMAN Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=1

 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/141 (51%), Positives = 101/141 (71%), Gaps = 8/141 (5%)

Query: 33  SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
           SRLD+EH+LIARYAA+LAAE  +V + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct: 396 SRLDEEHRLIARYAARLAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQ 455

Query: 93  RLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
           RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLE LM+
Sbjct: 456 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEELMK 515

Query: 152 LLKTH------QGT-SPNSSP 165
           LLK        Q T SP++SP
Sbjct: 516 LLKEEEQKQAAQATGSPHTSP 536

Homo sapiens (taxid: 9606)

>sp|Q9D2N4|DTNA_MOUSE Dystrobrevin alpha OS=Mus musculus GN=Dtna PE=1 SV=2

 Score =  125 bits (315), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 104/149 (69%), Gaps = 13/149 (8%)

Query: 30  LEAS-RLDDEHKLIARYAAKLAAENRSVG----KAPSEGSLSLDTSRAQRELVSQLESKN 84
           LE+S RLD+EH+LIARYAA+LAAE+ S      ++  + S ++D ++ QR+L+++LE+KN
Sbjct: 421 LESSNRLDEEHRLIARYAARLAAESSSSQPTQQRSAPDISFTIDANKQQRQLIAELENKN 480

Query: 85  REIMREIARLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLM 143
           REI++EI RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LM
Sbjct: 481 REILQEIQRLRVEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELM 540

Query: 144 VQLEGLMRLLK-------THQGTSPNSSP 165
           VQLEGLM+LLK       T   +SP SSP
Sbjct: 541 VQLEGLMKLLKEEELKQGTQGASSPRSSP 569

Involved in synapse maturation and required for normal muscle function.

Mus musculus (taxid: 10090)

>sp|Q9Y048|DTN1_CAEEL Dystrobrevin-1 OS=Caenorhabditis elegans GN=dyb-1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 73/142 (51%), Gaps = 24/142 (16%)

Query: 16  TSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRA--Q 73
           TS    PG+ + G +    +DDEHKLIARYAAKL+         P     S+++S    +
Sbjct: 388 TSPVLLPGQASHGGV----IDDEHKLIARYAAKLSGR----ADYPLSNGRSMNSSMVGDE 439

Query: 74  RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLA 133
           R L++QLE +N  ++RE+ARL  Q   +                L  LR RK ELE  + 
Sbjct: 440 RTLIAQLEEENSMMVREMARLESQTTSD--------------DGLAGLRDRKMELEEKMF 485

Query: 134 SLQDSRRHLMVQLEGLMRLLKT 155
            +Q  RR LM+QLE LM  L T
Sbjct: 486 EMQQRRRELMMQLEHLMAQLNT 507

Plays a role in cholinergic transmission and as a functional partner of dystrophin (dys-1), necessary for muscle maintenance.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1

 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)

Query: 35   LDDEHKLIARYAAKLAAENR-SVGKAPSEGSLSLDTS-RAQRE-LVSQLESKNREIMREI 91
            +DDEH LI  Y   L  ++  S  ++P++  +SL++  R + E +++ LE +NR +  E 
Sbjct: 3454 IDDEHLLIQHYCQSLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEY 3513

Query: 92   ARLRRQQELEGV--CASGFEDNPA---------LMSELRALRMRKDELESHLASLQDSRR 140
             RL++Q E +G+    S  E  P          L++E + LR  K  LE+ + +L+D  +
Sbjct: 3514 DRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQTLEDHNK 3573

Query: 141  HLMVQLEGLMRLLKTHQG 158
             L  QL  L +LL+  Q 
Sbjct: 3574 QLESQLHRLRQLLEQPQA 3591

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Sus scrofa (taxid: 9823)

>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 24/139 (17%)

Query: 36   DDEHKLIARYAAKL-AAENRSVGKAPSEGSLSLDTSRAQRE----LVSQLESKNREIMRE 90
            DDEH+LIA+Y   L    N S  K+P +   ++D    QRE    ++  LE +N  +  E
Sbjct: 1608 DDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAE--QREELEAIIRDLEEENANLQAE 1665

Query: 91   IARLRRQQE----------------LEGVCASGFEDNPALMSELRALRMRKDELESHLAS 134
              +L  +++                + G+   G E    +M+E + LR  K  LE+ +  
Sbjct: 1666 YQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQG-EQGQDMMAEAKLLRQHKGRLEARMQI 1724

Query: 135  LQDSRRHLMVQLEGLMRLL 153
            L+D  R L  QL+ L +LL
Sbjct: 1725 LEDHNRQLEAQLQRLRQLL 1743

Required for the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. May play a role in anchoring the cytoskeleton to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)

Query: 35   LDDEHKLIARYAAKLAAENR-SVGKAPSEGSLSLDTS-RAQRE-LVSQLESKNREIMREI 91
            +DDEH LI  Y   L  E+  S  ++P++  +SL++  R + E +++ LE +NR +  E 
Sbjct: 3460 IDDEHLLIQHYWRSLNQESPLSQPRSPAQILISLESEERGELERILADLEGRNRNLQAEY 3519

Query: 92   ARLRRQQELEGV--CASGFEDNPA---------LMSELRALRMRKDELESHLASLQDSRR 140
             RL++Q E +G+    S  E  P          L++E + LR  K  LE+ +  L+D  +
Sbjct: 3520 DRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQILEDHNK 3579

Query: 141  HLMVQLEGLMRLLKTHQG 158
             L  QL  L +LL+  Q 
Sbjct: 3580 QLESQLHRLRQLLEQPQA 3597

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Canis familiaris (taxid: 9615)

>sp|Q7YU29|DMDE_DROME Dystrophin, isoform E OS=Drosophila melanogaster GN=Dys PE=1 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 24/139 (17%)

Query: 36  DDEHKLIARYAAKL-AAENRSVGKAPSEGSLSLDTSRAQRE----LVSQLESKNREIMRE 90
           DDEH+LIA+Y   L    N S  K+P +   ++D    QRE    ++  LE +N  +  E
Sbjct: 805 DDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAE--QREELEAIIRDLEEENANLQAE 862

Query: 91  IARLRRQQE----------------LEGVCASGFEDNPALMSELRALRMRKDELESHLAS 134
             +L  +++                + G+   G E    +M+E + LR  K  LE+ +  
Sbjct: 863 YQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQG-EQGQDMMAEAKLLRQHKGRLEARMQI 921

Query: 135 LQDSRRHLMVQLEGLMRLL 153
           L+D  R L  QL+ L +LL
Sbjct: 922 LEDHNRQLEAQLQRLRQLL 940

Specifically required for survival and integrity of the larval musculature: the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. May play a role in anchoring the cytoskeleton to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
328723101	686	PREDICTED: dystrobrevin beta-like [Acyrt	0.969	0.233	0.682	1e-53
383863499	780	PREDICTED: dystrobrevin beta-like [Megac	0.884	0.187	0.627	1e-47
340730048	782	PREDICTED: dystrobrevin beta-like [Bombu	0.884	0.186	0.627	1e-47
307215341	788	Dystrobrevin beta [Harpegnathos saltator	0.884	0.185	0.621	3e-47
328780696	781	PREDICTED: dystrobrevin beta isoform 1 [	0.884	0.186	0.621	4e-47
380016706	782	PREDICTED: dystrobrevin beta-like [Apis	0.884	0.186	0.621	4e-47
307186522	787	Dystrobrevin beta [Camponotus floridanus	0.884	0.185	0.621	4e-47
332023476	789	Dystrobrevin beta [Acromyrmex echinatior	0.884	0.185	0.621	2e-46
270006871	787	hypothetical protein TcasGA2_TC013262 [T	0.915	0.191	0.639	1e-45
189237637	641	PREDICTED: similar to dystrobrevin [Trib	0.909	0.234	0.635	1e-45

>gi|328723101|ref|XP_001948408.2| PREDICTED: dystrobrevin beta-like [Acyrthosiphon pisum]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 139/167 (83%), Gaps = 7/167 (4%)

Query: 2   LSNTFDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAPS 61
           LS +   +++DS+++S  RSP +  M +L+ + +DDEHKLIARYAA+LAAE + VG+APS
Sbjct: 347 LSISSQFNTLDSKTSS--RSPDKRTM-SLDYTSMDDEHKLIARYAARLAAEAK-VGRAPS 402

Query: 62  EGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRAL 121
           EGSLSLDTSRAQREL+ QLESKNREIM+EI++LR+QQE+EG C+   EDNPALMSELRAL
Sbjct: 403 EGSLSLDTSRAQRELIIQLESKNREIMKEISKLRKQQEMEGFCSGYSEDNPALMSELRAL 462

Query: 122 RMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           R RK ELESHL SLQDSRR LM QLEGLM+LLK HQG   ++PNSSP
Sbjct: 463 RNRKHELESHLTSLQDSRRQLMDQLEGLMKLLKNHQGSPRSTPNSSP 509

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863499|ref|XP_003707218.1| PREDICTED: dystrobrevin beta-like [Megachile rotundata]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 133/177 (75%), Gaps = 31/177 (17%)

Query: 6   FDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSV--------- 56
           FD  SMDSRST          + ++++SRLDDEHKLIARYA +LA E R++         
Sbjct: 359 FDSGSMDSRST----------LRSMDSSRLDDEHKLIARYAQRLAQEARTMPRAASRMSQ 408

Query: 57  ----GKAPSEGSL-SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDN 111
               G+APS+ +L SLD SRAQREL+SQLE+KN+EIMREIARLRRQQE+E   A+G E N
Sbjct: 409 ADQAGRAPSDANLASLDASRAQRELISQLEAKNKEIMREIARLRRQQEIE---AAGLE-N 464

Query: 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           PALMSELRALR RKDELE+HLA+LQDSRR LMVQLEGLM++LK HQ    ++PNSSP
Sbjct: 465 PALMSELRALRQRKDELETHLATLQDSRRQLMVQLEGLMKMLKNHQASPRSTPNSSP 521

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340730048|ref|XP_003403301.1| PREDICTED: dystrobrevin beta-like [Bombus terrestris] gi|350416749|ref|XP_003491084.1| PREDICTED: dystrobrevin beta-like [Bombus impatiens]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 133/177 (75%), Gaps = 31/177 (17%)

Query: 6   FDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSV--------- 56
           FD  SMDSRST          + ++++SRLDDEHKLIARYA +LA E R++         
Sbjct: 359 FDSGSMDSRST----------LRSMDSSRLDDEHKLIARYAQRLAQEARTMPRAASRMSQ 408

Query: 57  ----GKAPSEGSL-SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDN 111
               G+APS+ +L SLD SRAQREL+SQLE+KN+EIMREIARLRRQQE+E   A+G E N
Sbjct: 409 ADQAGRAPSDANLASLDASRAQRELISQLEAKNKEIMREIARLRRQQEIE---AAGLE-N 464

Query: 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           PALMSELRALR RKDELE+HLA+LQDSRR LMVQLEGLM++LK HQ    ++PNSSP
Sbjct: 465 PALMSELRALRQRKDELETHLATLQDSRRQLMVQLEGLMKMLKNHQASPRSTPNSSP 521

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215341|gb|EFN90053.1| Dystrobrevin beta [Harpegnathos saltator]

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 133/177 (75%), Gaps = 31/177 (17%)

Query: 6   FDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSV--------- 56
           FD  S+DSRST          + ++++SRLDDEHKLIARYA +LA E R++         
Sbjct: 359 FDSGSVDSRST----------LRSMDSSRLDDEHKLIARYAQRLAQEARTMPRTASRMSQ 408

Query: 57  ----GKAPSEGSL-SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDN 111
               G+APS+ +L SLD SRAQREL+SQLE+KN+EIMREIARLRRQQE+E   A+G E N
Sbjct: 409 ADQAGRAPSDANLASLDASRAQRELISQLEAKNKEIMREIARLRRQQEIE---AAGLE-N 464

Query: 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           PALMSELRALR RKDELE+HLA+LQDSRR LMVQLEGLM++LK HQ    ++PNSSP
Sbjct: 465 PALMSELRALRQRKDELETHLATLQDSRRQLMVQLEGLMKMLKNHQASPRSTPNSSP 521

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780696|ref|XP_395141.4| PREDICTED: dystrobrevin beta isoform 1 [Apis mellifera]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 132/177 (74%), Gaps = 31/177 (17%)

Query: 6   FDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSV--------- 56
           FD  SMDSRST          + ++++SRLDDEHKLIARYA +LA E R++         
Sbjct: 359 FDSGSMDSRST----------LRSMDSSRLDDEHKLIARYAQRLAQEARTMPRAASRMSQ 408

Query: 57  ----GKAPSEGSL-SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDN 111
               G+ PS+ +L SLD SRAQREL+SQLE+KN+EIMREIARLRRQQE+E   A+G E N
Sbjct: 409 ADQAGRTPSDANLASLDASRAQRELISQLEAKNKEIMREIARLRRQQEIE---AAGLE-N 464

Query: 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           PALMSELRALR RKDELE+HLA+LQDSRR LMVQLEGLM++LK HQ    ++PNSSP
Sbjct: 465 PALMSELRALRQRKDELETHLATLQDSRRQLMVQLEGLMKMLKNHQASPRSTPNSSP 521

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016706|ref|XP_003692316.1| PREDICTED: dystrobrevin beta-like [Apis florea]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 132/177 (74%), Gaps = 31/177 (17%)

Query: 6   FDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSV--------- 56
           FD  SMDSRST          + ++++SRLDDEHKLIARYA +LA E R++         
Sbjct: 359 FDSGSMDSRST----------LRSMDSSRLDDEHKLIARYAQRLAQEARTMPRAASRMSQ 408

Query: 57  ----GKAPSEGSL-SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDN 111
               G+ PS+ +L SLD SRAQREL+SQLE+KN+EIMREIARLRRQQE+E   A+G E N
Sbjct: 409 ADQAGRTPSDANLASLDASRAQRELISQLEAKNKEIMREIARLRRQQEIE---AAGLE-N 464

Query: 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           PALMSELRALR RKDELE+HLA+LQDSRR LMVQLEGLM++LK HQ    ++PNSSP
Sbjct: 465 PALMSELRALRQRKDELETHLATLQDSRRQLMVQLEGLMKMLKNHQASPRSTPNSSP 521

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186522|gb|EFN72082.1| Dystrobrevin beta [Camponotus floridanus]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 133/177 (75%), Gaps = 31/177 (17%)

Query: 6   FDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSV--------- 56
           FD  S+DSRST          + ++++SRLDDEHKLIARYA +LA E R++         
Sbjct: 359 FDSGSVDSRST----------LRSMDSSRLDDEHKLIARYAQRLAQEARTMPRTTSRMSQ 408

Query: 57  ----GKAPSEGSL-SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDN 111
               G+APS+ +L SLD SRAQREL+SQLE+KN+EIMREIARLRRQQE+E   A+G E N
Sbjct: 409 ADQAGRAPSDANLASLDASRAQRELISQLEAKNKEIMREIARLRRQQEIE---AAGLE-N 464

Query: 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           PALMSELRALR RKDELE+HLA+LQDSRR LMVQLEGLM++LK HQ    ++PNSSP
Sbjct: 465 PALMSELRALRQRKDELETHLATLQDSRRQLMVQLEGLMKMLKNHQASPRSTPNSSP 521

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023476|gb|EGI63719.1| Dystrobrevin beta [Acromyrmex echinatior]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 132/177 (74%), Gaps = 31/177 (17%)

Query: 6   FDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSV--------- 56
           FD  S+DSRST          + ++++SRLDDEHKLIARYA +LA E R+V         
Sbjct: 359 FDSGSVDSRST----------LRSMDSSRLDDEHKLIARYAQRLAQEARTVPRTASRMSQ 408

Query: 57  ----GKAPSEGSL-SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDN 111
                +APS+ +L SLD SRAQREL+SQLE+KN+EIMREIARLRRQQE+E   A+G E N
Sbjct: 409 ADQASRAPSDVNLASLDASRAQRELISQLEAKNKEIMREIARLRRQQEIE---AAGLE-N 464

Query: 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           PALMSELRALR RKDELE+HLA+LQDSRR LMVQLEGLM++LK HQ    ++PNSSP
Sbjct: 465 PALMSELRALRQRKDELETHLATLQDSRRQLMVQLEGLMKMLKNHQASPRSTPNSSP 521

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006871|gb|EFA03319.1| hypothetical protein TcasGA2_TC013262 [Tribolium castaneum]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 133/169 (78%), Gaps = 18/169 (10%)

Query: 2   LSNTFD-VSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRS-VGKA 59
            ++ FD + S+DSRST  ARS        L+++R DDEHK++ARYAA+LA E RS +G+ 
Sbjct: 351 FTSHFDGMGSLDSRST--ARS--------LDSAR-DDEHKMLARYAARLAQEARSGMGRV 399

Query: 60  PSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELR 119
           PSE  L +D++RAQREL+SQLE+KNREIMREIARLRRQQELE     G E NPALM+ELR
Sbjct: 400 PSEACLGMDSTRAQRELISQLEAKNREIMREIARLRRQQELEN-SGHGTE-NPALMNELR 457

Query: 120 ALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           ALRMRKDELE+HL +LQDSRR LM+QLEGLM++LK HQ    ++PNSSP
Sbjct: 458 ALRMRKDELETHLTTLQDSRRQLMIQLEGLMKMLKNHQSSPRSTPNSSP 506

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237637|ref|XP_966997.2| PREDICTED: similar to dystrobrevin [Tribolium castaneum]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 134/170 (78%), Gaps = 20/170 (11%)

Query: 2   LSNTFD-VSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRS-VGKA 59
            ++ FD + S+DSRST  ARS        L+++R DDEHK++ARYAA+LA E RS +G+ 
Sbjct: 351 FTSHFDGMGSLDSRST--ARS--------LDSAR-DDEHKMLARYAARLAQEARSGMGRV 399

Query: 60  PSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGF-EDNPALMSEL 118
           PSE  L +D++RAQREL+SQLE+KNREIMREIARLRRQQELE    SG   +NPALM+EL
Sbjct: 400 PSEACLGMDSTRAQRELISQLEAKNREIMREIARLRRQQELEN---SGHGTENPALMNEL 456

Query: 119 RALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG---TSPNSSP 165
           RALRMRKDELE+HL +LQDSRR LM+QLEGLM++LK HQ    ++PNSSP
Sbjct: 457 RALRMRKDELETHLTTLQDSRRQLMIQLEGLMKMLKNHQSSPRSTPNSSP 506

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
FB|FBgn0033739	816	Dyb "Dystrobrevin-like" [Droso	0.945	0.191	0.574	2.8e-38
ZFIN|ZDB-GENE-070117-3	568	dtnbb "dystrobrevin, beta b" [	0.830	0.241	0.571	1.2e-33
UNIPROTKB|F1PL72	408	DTNB "Uncharacterized protein"	0.806	0.325	0.529	7.7e-32
UNIPROTKB|E1C4Z7	742	DTNA "Uncharacterized protein"	0.812	0.180	0.553	8.4e-32
RGD|1309579	654	Dtnb "dystrobrevin, beta" [Rat	0.806	0.203	0.529	1.5e-31
UNIPROTKB|P84060	654	Dtnb "Dystrobrevin beta" [Ratt	0.806	0.203	0.529	1.5e-31
UNIPROTKB|D4A4J4	700	Dtnb "Dystrobrevin beta" [Ratt	0.806	0.19	0.529	1.9e-31
MGI|MGI:1203728	659	Dtnb "dystrobrevin, beta" [Mus	0.806	0.201	0.529	2e-31
UNIPROTKB|B7Z202	416	DTNB "cDNA FLJ60475, highly si	0.806	0.319	0.529	2.6e-31
UNIPROTKB|E9PEY4	590	DTNB "Dystrobrevin beta" [Homo	0.969	0.271	0.472	5.7e-31

FB|FBgn0033739 Dyb "Dystrobrevin-like" [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 2.8e-38, P = 2.8e-38
 Identities = 96/167 (57%), Positives = 115/167 (68%)

Query:     6 FDVSS-MDSRSTSTARSPGRYNMGTL-----EASRLDDEHKLIARYAAKLAAENRSVGKA 59
             FD SS +DSR+T  +        GT       AS  D+EH+LIARYAA+LA ENR+    
Sbjct:   361 FDRSSTLDSRATGRSLDSASGTAGTTMSRVAAASANDEEHRLIARYAARLAQENRAPSNL 420

Query:    60 PSEGS-LSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSEL 118
             P   + +  D SRAQREL++QLESKN+EIMREIARLRRQQE E +      +NPAL++EL
Sbjct:   421 PDNATPIGTDNSRAQRELIAQLESKNKEIMREIARLRRQQETEQMAP----ENPALINEL 476

Query:   119 RALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGTSPNSSP 165
             RALR RK ELE HL +LQDSRR LM QLEGLMR+LK  Q  SP S+P
Sbjct:   477 RALRQRKGELEGHLGALQDSRRQLMEQLEGLMRMLKNQQTASPRSTP 523

GO:0008307 "structural constituent of muscle" evidence=ISS

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=ISS

GO:0016014 "dystrobrevin complex" evidence=ISS;NAS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-070117-3 dtnbb "dystrobrevin, beta b" [Danio rerio (taxid:7955)]

 Score = 369 (135.0 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 80/140 (57%), Positives = 105/140 (75%)

Query:    29 TLEA-SRLDDEHKLIARYAAKLAAE-NRSVGKAPSEGSLSLDTSRAQRELVSQLESKNRE 86
             TLE+ SRLD+EH+LIARYAA+LAAE + S    PS+ S + D ++ QR+L+++LE+KNRE
Sbjct:   335 TLESPSRLDEEHRLIARYAARLAAEASNSTQCPPSDLSFNFDANKQQRQLIAELENKNRE 394

Query:    87 IMREIARLRRQQELEGV-CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145
             I++EI RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQ
Sbjct:   395 ILQEIQRLRLEHEQASQPTPEKAQQNPTLLAELRLLRHRKDELERRMSALQESRRELMVQ 454

Query:   146 LEGLMRLLKTHQGTSPNSSP 165
             LEGLMRLLK   GTSP+SSP
Sbjct:   455 LEGLMRLLKAQTGTSPHSSP 474

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PL72 DTNB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 71/134 (52%), Positives = 100/134 (74%)

Query:    33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
             SRLD+EH+LIARYAA+LAAE  ++ + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct:   184 SRLDEEHRLIARYAARLAAEAGNMTRPPADLSFNFDANKQQRQLIAELENKNREILQEIQ 243

Query:    93 RLRRQQELEGV-CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
             RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLEGLM+
Sbjct:   244 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 303

Query:   152 LLKTHQGTSPNSSP 165
             LLK     SP++SP
Sbjct:   304 LLKAQATGSPHTSP 317

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C4Z7 DTNA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 8.4e-32, P = 8.4e-32
 Identities = 77/139 (55%), Positives = 100/139 (71%)

Query:    32 ASRLDDEHKLIARYAAKLAAENRSVGKAPSEG----SLSLDTSRAQRELVSQLESKNREI 87
             ASRLD+EHKLIARYAA+LAAE  S  +A   G    S ++D ++ QR+L+++LE+KNREI
Sbjct:   426 ASRLDEEHKLIARYAARLAAETSSSQQAQQRGAADISFTIDANKQQRQLIAELENKNREI 485

Query:    88 MREIARLRRQQELEGV-CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQL 146
             ++EI RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQL
Sbjct:   486 LQEIQRLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQL 545

Query:   147 EGLMRLLKTHQGTSPNSSP 165
             EGLM+LLKT    SP SSP
Sbjct:   546 EGLMKLLKTQGAGSPRSSP 564

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0045202 "synapse" evidence=IEA

RGD|1309579 Dtnb "dystrobrevin, beta" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 71/134 (52%), Positives = 100/134 (74%)

Query:    33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
             SRLD+EH+LIARYAA+LAAE  ++ + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct:   396 SRLDEEHRLIARYAARLAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQ 455

Query:    93 RLRRQQELEGV-CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
             RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLEGLM+
Sbjct:   456 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 515

Query:   152 LLKTHQGTSPNSSP 165
             LLK     SP++SP
Sbjct:   516 LLKAQATGSPHTSP 529

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA;ISO

UNIPROTKB|P84060 Dtnb "Dystrobrevin beta" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 71/134 (52%), Positives = 100/134 (74%)

Query:    33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
             SRLD+EH+LIARYAA+LAAE  ++ + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct:   396 SRLDEEHRLIARYAARLAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQ 455

Query:    93 RLRRQQELEGV-CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
             RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLEGLM+
Sbjct:   456 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 515

Query:   152 LLKTHQGTSPNSSP 165
             LLK     SP++SP
Sbjct:   516 LLKAQATGSPHTSP 529

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|D4A4J4 Dtnb "Dystrobrevin beta" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 71/134 (52%), Positives = 100/134 (74%)

Query:    33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
             SRLD+EH+LIARYAA+LAAE  ++ + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct:   396 SRLDEEHRLIARYAARLAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQ 455

Query:    93 RLRRQQELEGV-CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
             RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLEGLM+
Sbjct:   456 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 515

Query:   152 LLKTHQGTSPNSSP 165
             LLK     SP++SP
Sbjct:   516 LLKAQATGSPHTSP 529

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1203728 Dtnb "dystrobrevin, beta" [Mus musculus (taxid:10090)]

 Score = 352 (129.0 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/134 (52%), Positives = 100/134 (74%)

Query:    33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
             SRLD+EH+LIARYAA+LAAE  ++ + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct:   396 SRLDEEHRLIARYAARLAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQ 455

Query:    93 RLRRQQELEGV-CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
             RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLEGLM+
Sbjct:   456 RLRLEHEQASQPTPEKAQQNPMLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 515

Query:   152 LLKTHQGTSPNSSP 165
             LLK     SP++SP
Sbjct:   516 LLKAQATGSPHTSP 529

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045202 "synapse" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B7Z202 DTNB "cDNA FLJ60475, highly similar to Dystrobrevin beta" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 71/134 (52%), Positives = 99/134 (73%)

Query:    33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
             SRLD+EH+LIARYAA+LAAE  +V + P++ S + D ++ QR+L+++LE+KNREI++EI 
Sbjct:   192 SRLDEEHRLIARYAARLAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQ 251

Query:    93 RLRRQQELEGV-CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
             RLR + E          + NP L++ELR LR RKDELE  +++LQ+SRR LMVQLE LM+
Sbjct:   252 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEELMK 311

Query:   152 LLKTHQGTSPNSSP 165
             LLK     SP++SP
Sbjct:   312 LLKAQATGSPHTSP 325

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PEY4 DTNB "Dystrobrevin beta" [Homo sapiens (taxid:9606)]

 Score = 346 (126.9 bits), Expect = 5.7e-31, P = 5.7e-31
 Identities = 78/165 (47%), Positives = 113/165 (68%)

Query:     2 LSNTFDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAPS 61
             L+N  D  +M S  +S   +P +  + +   SRLD+EH+LIARYAA+LAAE  +V + P+
Sbjct:   339 LTNMND--TMVSHMSSGVPTPTKSVLDS--PSRLDEEHRLIARYAARLAAEAGNVTRPPT 394

Query:    62 EGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGV-CASGFEDNPALMSELRA 120
             + S + D ++ QR+L+++LE+KNREI++EI RLR + E          + NP L++ELR 
Sbjct:   395 DLSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEKAQQNPTLLAELRL 454

Query:   121 LRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGTSPNSSP 165
             LR RKDELE  +++LQ+SRR LMVQLE LM+LLK     SP++SP
Sbjct:   455 LRQRKDELEQRMSALQESRRELMVQLEELMKLLKAQATGSPHTSP 499

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P84060	DTNB_RAT	No assigned EC number	0.5298	0.8060	0.2033	yes	N/A
O70585	DTNB_MOUSE	No assigned EC number	0.5298	0.8060	0.2018	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG4286|consensus	966		99.92
KOG4301|consensus	434		99.48
KOG4301|consensus	434		99.37
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	93.43
KOG4005|consensus	292		91.49
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.4
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	89.14
PF11068	131	YlqD: YlqD protein; InterPro: IPR021297 This bacte	88.79
PF03980	109	Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essent	87.53
KOG4001|consensus	259		87.08
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	86.87
PF03961	451	DUF342: Protein of unknown function (DUF342); Inte	86.5
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	85.58
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.07
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	84.07
PF14662	193	CCDC155: Coiled-coil region of CCDC155	83.82
PRK10884	206	SH3 domain-containing protein; Provisional	83.48
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	83.43
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	83.0
PLN02678	448	seryl-tRNA synthetase	82.46
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	82.08
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	81.79
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.74
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	81.69
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	81.65
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.23
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	81.07
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	80.5

>KOG4286|consensus

Probab=99.92  E-value=1.1e-25  Score=213.97  Aligned_cols=128  Identities=28%  Similarity=0.452  Sum_probs=112.8

Q ss_pred             CCCCCCCchhHHHHHHHHHhhhhcc-cCCCCCCCCcc--cccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccC-
Q psy4946          30 LEASRLDDEHKLIARYAAKLAAENR-SVGKAPSEGSL--SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCA-  105 (165)
Q Consensus        30 ~d~~~~DeEH~LIarY~~~L~~~~~-~~~~~p~~~~~--~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~-  105 (165)
                      +.+...|++|.+|.|||..|.++++ .++.+|++|.-  +.+..++++.|++.+|.+||.++.||.++|+||+..+..| 
T Consensus       741 s~~~s~~~~q~lI~~~~~qL~rd~~~~q~~s~~~ilQf~~~e~r~ELe~I~a~le~e~r~lq~e~~qlk~Qhe~rg~AP~  820 (966)
T KOG4286|consen  741 SPNESIDDEQLLIQHYCQQLNQDSPLSQPRSPAQILQSLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLAPL  820 (966)
T ss_pred             CccccchhHHHHHHHHHHHhccccccccccChHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhcCCCcchhhhhcccCCCC
Confidence            3447799999999999999999966 56788887764  4456679999999999999999999999999999776533 


Q ss_pred             ----------CCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946         106 ----------SGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ  157 (165)
Q Consensus       106 ----------~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~  157 (165)
                                ++++.+.+|+|||++|||||+|||+||+||||||+||++||+||+.||.+|.
T Consensus       821 ls~~~s~~St~~tQ~~~dl~AEAkaLRqHK~RLE~R~rILEdhNKQLESQLqRLr~LLrQP~  882 (966)
T KOG4286|consen  821 PSPPEMMPSTPQSQRDAELIAEAKALRQHKGRLEARMQILEDHNKQLESQLHRLRQLLRQPQ  882 (966)
T ss_pred             CCCcccccCCCCcchhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence                      2456789999999999999999999999999999999999999999999776

>KOG4301|consensus

Probab=99.48  E-value=3.3e-13  Score=121.12  Aligned_cols=135  Identities=23%  Similarity=0.156  Sum_probs=113.0

Q ss_pred             CCCCCCchhHHHHHHHHHhhhhccc-CC---CCCCCCcccccch---HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc
Q psy4946          31 EASRLDDEHKLIARYAAKLAAENRS-VG---KAPSEGSLSLDTS---RAQRELVSQLESKNREIMREIARLRRQQELEGV  103 (165)
Q Consensus        31 d~~~~DeEH~LIarY~~~L~~~~~~-~~---~~p~~~~~~~d~~---~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~  103 (165)
                      .+..+|.||.+|+.|+..|+..... .|   +....+.+.++.+   +++.+.|..++++|+.|+.||++++-.||....
T Consensus        98 ss~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isds~gim~~i~~~~fl~evlsl  177 (434)
T KOG4301|consen   98 SSHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISDSRGIMQEIQRDQFLHEVLSL  177 (434)
T ss_pred             ccccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHcC
Confidence            3478999999999999999988642 22   3334466777877   688999999999999999999999999985443


Q ss_pred             cCC-CCCCCh---hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4946         104 CAS-GFEDNP---ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGTSPNSSP  165 (165)
Q Consensus       104 ~~~-~~~~~~---eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~~~sp~ssp  165 (165)
                      +.+ ....++   ++.++.+.+||+|.+|+.+|..|+...+.+++++..||.+|+....++++++|
T Consensus       178 pT~v~e~psfg~te~~a~~cf~qqrKv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v~nv~hpv~c  243 (434)
T KOG4301|consen  178 PTAVFEGPSFGYTELSARLCFLQQRKVELNQFLDTLMSDPPPQCLVWLPLMHRLATVENVFHPVEC  243 (434)
T ss_pred             CchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhcccCCCccC
Confidence            221 122344   99999999999999999999999999999999999999999999999988765

>KOG4301|consensus

Probab=99.37  E-value=8.9e-13  Score=118.38  Aligned_cols=67  Identities=46%  Similarity=0.710  Sum_probs=60.9

Q ss_pred             CCCCCchhHHHHHHHHHhhhhcccCCCCCCCCcccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946          32 ASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQ   98 (165)
Q Consensus        32 ~~~~DeEH~LIarY~~~L~~~~~~~~~~p~~~~~~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~   98 (165)
                      .+.++|||++||||++.|.++.+..-+.|.+..+..|+++++|.+||+||++||+|++||.||+.||
T Consensus       368 ~s~~r~e~~~~ar~aa~ls~e~~~p~~~p~d~nf~~davkq~r~lia~lE~~n~~i~~E~~rl~lq~  434 (434)
T KOG4301|consen  368 PSTMRDEHALIARYAADLSTEAADPYRQPEDENFENDAVKQQRQLIAELENKNREILQEIQRLRLQH  434 (434)
T ss_pred             ccchhhHHHHHHHHHhhhccccCCCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            3679999999999999999998765577778888899999999999999999999999999999875

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=93.43  E-value=0.27  Score=37.34  Aligned_cols=70  Identities=21%  Similarity=0.306  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc-cc--CC---CCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHH
Q psy4946          71 RAQRELVSQLESKNREIMREIARLRRQQELEG-VC--AS---GFEDNPALMSELRALRMRKDELESHLASLQDSRR  140 (165)
Q Consensus        71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~-~~--~~---~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnR  140 (165)
                      .=+|+=|++||++|+.|..|+.++|....... .+  +.   .+.....|-.|+|+-|.-...|-.+.--||-.||
T Consensus        18 ~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eLq~ENR   93 (96)
T PF11365_consen   18 ELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMELQYENR   93 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence            34588899999999999999999999764222 11  11   1234567889999999999999999888887776

>KOG4005|consensus

Probab=91.49  E-value=0.71  Score=40.80  Aligned_cols=53  Identities=28%  Similarity=0.230  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELES  130 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~  130 (165)
                      +.+..|.+|++||+.|+.|-++||.+.+---      ..|.+|..|+-+|||.-.+|-+
T Consensus        94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~------~~n~el~~~le~~~~~l~~~~~  146 (292)
T KOG4005|consen   94 EMEYEIKDLTEENEILQNENDSLRAINESLL------AKNHELDSELELLRQELAELKQ  146 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHhhHH
Confidence            5678999999999999999999999875211      2566777777777776555543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.40  E-value=2.6  Score=34.20  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR  151 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~  151 (165)
                      +...-|+.|+.++..+..+|..|..+-....      ..+..|-.|+-.|.-+-.-+|.+...|+.-|++|   ++|+|+
T Consensus       113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~------k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L---v~Rwm~  183 (194)
T PF08614_consen  113 EKERRLAELEAELAQLEEKIKDLEEELKEKN------KANEILQDELQALQLQLNMLEEKLRKLEEENREL---VERWMQ  183 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            5566788888888888888887776543221      1455788899999999999999999999999999   566666


Q ss_pred             HH
Q psy4946         152 LL  153 (165)
Q Consensus       152 LL  153 (165)
                      .-
T Consensus       184 ~k  185 (194)
T PF08614_consen  184 RK  185 (194)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=89.14  E-value=2  Score=40.67  Aligned_cols=72  Identities=22%  Similarity=0.365  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946          71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM  150 (165)
Q Consensus        71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr  150 (165)
                      ++.|.-+..|+.+|+.|.+|-+|||......         |..+-.   .|.--+.++......|++.+.+|..+|..|.
T Consensus        69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i---------d~~i~~---av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~  136 (472)
T TIGR03752        69 KELRKRLAKLISENEALKAENERLQKREQSI---------DQQIQQ---AVQSETQELTKEIEQLKSERQQLQGLIDQLQ  136 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---------HHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778888999999999999999998755321         111111   1112234566666666777777777777776


Q ss_pred             HHHh
Q psy4946         151 RLLK  154 (165)
Q Consensus       151 ~LL~  154 (165)
                      .-|+
T Consensus       137 ~~l~  140 (472)
T TIGR03752       137 RRLA  140 (472)
T ss_pred             HHHh
Confidence            6664

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function

Probab=88.79  E-value=7.4  Score=30.73  Aligned_cols=69  Identities=19%  Similarity=0.393  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHH-----HHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946          71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELR-----ALRMRKDELESHLASLQDSRRHLMVQ  145 (165)
Q Consensus        71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEar-----lLRQhK~rLE~RM~iLedhnRQLe~Q  145 (165)
                      .-.+.++++|++.-..+-.|+++|..+.-             -+++|++     .+..=+..+++..+-+.+..++|..|
T Consensus        16 ~~K~~l~~~l~~~i~~~d~el~QLefq~k-------------r~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~q   82 (131)
T PF11068_consen   16 KWKEELLQELQEQIQQLDQELQQLEFQGK-------------RMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQ   82 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577899999998899999999987653             2334433     44445567888899999999999999


Q ss_pred             HHHHHHH
Q psy4946         146 LEGLMRL  152 (165)
Q Consensus       146 LerLr~L  152 (165)
                      |+.+..|
T Consensus        83 l~qv~~L   89 (131)
T PF11068_consen   83 LEQVQKL   89 (131)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9988775

; PDB: 4DCI_C.

>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export []

Probab=87.53  E-value=8.6  Score=28.34  Aligned_cols=42  Identities=12%  Similarity=0.217  Sum_probs=33.7

Q ss_pred             CChhHHHHHHH---HHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946         110 DNPALMSELRA---LRMRKDELESHLASLQDSRRHLMVQLEGLMR  151 (165)
Q Consensus       110 ~~~eLlaEarl---LRQhK~rLE~RM~iLedhnRQLe~QLerLr~  151 (165)
                      -+|+-+..+.+   +.++..+|..+.+.++..|.+|+.+++.+++
T Consensus        64 l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~  108 (109)
T PF03980_consen   64 LTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRK  108 (109)
T ss_pred             CChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45554444544   4678899999999999999999999999875

>KOG4001|consensus

Probab=87.08  E-value=4.7  Score=35.16  Aligned_cols=65  Identities=29%  Similarity=0.430  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHH--HhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALR--MRKDELESHLASLQDSRRHLMVQLEGL  149 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLR--QhK~rLE~RM~iLedhnRQLe~QLerL  149 (165)
                      ..+.=++.||.+|+.|-.-|..++.+.+...          ---+|.+..-  .||++    ..-|-+.|+||..||+++
T Consensus       189 ~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e----------~r~~E~r~ieEkk~~ee----i~fLk~tN~qLKaQLegI  254 (259)
T KOG4001|consen  189 RATTEWKVLEDKKKELELKIAQLKKKLETDE----------IRSEEEREIEEKKMKEE----IEFLKETNRQLKAQLEGI  254 (259)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence            4466789999999999999999999887322          1223333221  23443    346899999999999986


Q ss_pred             H
Q psy4946         150 M  150 (165)
Q Consensus       150 r  150 (165)
                      -
T Consensus       255 ~  255 (259)
T KOG4001|consen  255 L  255 (259)
T ss_pred             c
Confidence            3

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=86.87  E-value=3.8  Score=29.93  Aligned_cols=67  Identities=25%  Similarity=0.408  Sum_probs=46.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhcc----cCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946          77 VSQLESKNREIMREIARLRRQQELEGV----CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLM  143 (165)
Q Consensus        77 Ia~LE~eNR~l~~EieRLr~q~e~~~~----~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe  143 (165)
                      |-.|-.+.|.++.+++.|+.+.-....    ....+..-.+|++|++.|......||..+..+++....++
T Consensus        31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l  101 (108)
T PF02403_consen   31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL  101 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888889999988887643221    0011235668999999888888888888877766655544

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function

Probab=86.50  E-value=9.4  Score=34.75  Aligned_cols=79  Identities=22%  Similarity=0.294  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946          71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL  149 (165)
Q Consensus        71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL  149 (165)
                      .++.+.+..|+++.+.+..++++++..-..-..........++..+.+..+++.+..|..++..|++...+|+.+|+..
T Consensus       330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~  408 (451)
T PF03961_consen  330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS  408 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5667777777777777777777777643211100012235678888899999999999999999999999999888876

The proteins are in the region of 500-600 amino acid residues in length.

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=85.58  E-value=3.9  Score=38.80  Aligned_cols=62  Identities=13%  Similarity=0.234  Sum_probs=44.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946          74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL  153 (165)
Q Consensus        74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL  153 (165)
                      ..-+++=+.+..+|.++|+.||.+-                    .++-..+..+|.+...|++.+++|..|++.+...+
T Consensus        68 qSALteqQ~kasELEKqLaaLrqEl--------------------q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~  127 (475)
T PRK13729         68 QHATTEMQVTAAQMQKQYEEIRREL--------------------DVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANP  127 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            3345566777888888888886432                    23335566789999999999999999997766654


Q ss_pred             hh
Q psy4946         154 KT  155 (165)
Q Consensus       154 ~~  155 (165)
                      ..
T Consensus       128 ~~  129 (475)
T PRK13729        128 VT  129 (475)
T ss_pred             CC
Confidence            43

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.07  E-value=12  Score=31.41  Aligned_cols=78  Identities=19%  Similarity=0.339  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR  151 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~  151 (165)
                      +..+-|.++.++-..+..||+.|+.+-+.-..      .+..+-..+.-+++.-.+|++++..++..+++|.-.+.+...
T Consensus        39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~------~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEV------YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888888888888888888887653221      344555666677788999999999999999999887766666


Q ss_pred             HHhh
Q psy4946         152 LLKT  155 (165)
Q Consensus       152 LL~~  155 (165)
                      -|++
T Consensus       113 ~L~~  116 (251)
T PF11932_consen  113 ELEQ  116 (251)
T ss_pred             HHHH
Confidence            5554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=84.07  E-value=5.5  Score=29.70  Aligned_cols=21  Identities=43%  Similarity=0.515  Sum_probs=18.4

Q ss_pred             HHhhhhHHHHHHHHHHHHHHh
Q psy4946          79 QLESKNREIMREIARLRRQQE   99 (165)
Q Consensus        79 ~LE~eNR~l~~EieRLr~q~e   99 (165)
                      .++++|+.|+.||+-|+.+-+
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve   41 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVE   41 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            577888999999999998876

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=83.82  E-value=14  Score=31.40  Aligned_cols=86  Identities=26%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh-----cccC-------------CCCCCChhHHHHHHHHHHhHhHHHHH
Q psy4946          70 SRAQRELVSQLESKNREIMREIARLRRQQELE-----GVCA-------------SGFEDNPALMSELRALRMRKDELESH  131 (165)
Q Consensus        70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~-----~~~~-------------~~~~~~~eLlaEarlLRQhK~rLE~R  131 (165)
                      +..+..-|-..|+-|..|..||.-|+.+--..     .+-.             .--..+.-|+|.+|.+---..-|.+.
T Consensus        24 n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~  103 (193)
T PF14662_consen   24 NAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAE  103 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666777777777777776533111     0000             00124557899999998888899999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946         132 LASLQDSRRHLMVQLEGLMRLLKT  155 (165)
Q Consensus       132 M~iLedhnRQLe~QLerLr~LL~~  155 (165)
                      |..||+-|..|-+...+|.+-.++
T Consensus       104 i~~Lqeen~kl~~e~~~lk~~~~e  127 (193)
T PF14662_consen  104 IETLQEENGKLLAERDGLKKRSKE  127 (193)
T ss_pred             HHHHHHHHhHHHHhhhhHHHHHHH
Confidence            999999999999988887765543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.48  E-value=15  Score=30.95  Aligned_cols=76  Identities=13%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc-CCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVC-ASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM  150 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~-~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr  150 (165)
                      ..+..+.+||.+..++..++..++.+.....+- ..........+.   -|.....+|.+....++..++.|+.++..+.
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVIN---GLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777777777777777766543211000 000000111122   2445666666666666666666666666554

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=83.43  E-value=7.4  Score=37.59  Aligned_cols=71  Identities=23%  Similarity=0.341  Sum_probs=57.0

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946          74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM  150 (165)
Q Consensus        74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr  150 (165)
                      ..|-.+.|.--..|..||++||..+..      ....-...+.|++-+|+.-.+++.-.+.-++.-+||..+++.+-
T Consensus       411 ~~L~~qWe~~R~pL~~e~r~lk~~~~~------~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~  481 (594)
T PF05667_consen  411 VELAQQWEKHRAPLIEEYRRLKEKASN------RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP  481 (594)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            446667777777899999999987642      11234468999999999999999999999999999999887763

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=83.00  E-value=11  Score=31.23  Aligned_cols=58  Identities=16%  Similarity=0.314  Sum_probs=44.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946          77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK  154 (165)
Q Consensus        77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~  154 (165)
                      ...|+.||..+..|+..|+.+.+                    .|..-...|+.+.+++++-=+.|...++|-|++..
T Consensus        99 ~~~~~~e~~~l~~e~~~l~~~~e--------------------~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~  156 (161)
T TIGR02894        99 DQALQKENERLKNQNESLQKRNE--------------------ELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV  156 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566677777777777776553                    55566778888889999999999999999998764

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PLN02678 seryl-tRNA synthetase

Probab=82.46  E-value=6.8  Score=36.56  Aligned_cols=63  Identities=21%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhcc--c--CCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhH
Q psy4946          77 VSQLESKNREIMREIARLRRQQELEGV--C--ASGFEDNPALMSELRALRMRKDELESHLASLQDSR  139 (165)
Q Consensus        77 Ia~LE~eNR~l~~EieRLr~q~e~~~~--~--~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhn  139 (165)
                      |-.|.++-|+++.+++.||.+......  .  ......-.+|++|++.|.+....||.....+++..
T Consensus        35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l  101 (448)
T PLN02678         35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAAL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788888888888888886643221  0  01112334688888877665555555554444433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=82.08  E-value=11  Score=37.07  Aligned_cols=67  Identities=28%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHH-HhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHH
Q psy4946          75 ELVSQLESKNREIMREIARLRRQ-QELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRH  141 (165)
Q Consensus        75 ~lIa~LE~eNR~l~~EieRLr~q-~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQ  141 (165)
                      ..|..||.+.+.|..|++..|.. +|.......-......+-.|+..||+--+.|+.|++.|..++.+
T Consensus       418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~  485 (697)
T PF09726_consen  418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ  485 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888888888888877752 22222101111233456677777777666666666666555543

; GO: 0016021 integral to membrane

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=81.79  E-value=20  Score=29.50  Aligned_cols=83  Identities=17%  Similarity=0.267  Sum_probs=54.8

Q ss_pred             cccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946          66 SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQ  145 (165)
Q Consensus        66 ~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q  145 (165)
                      .-++....+.-+..|..+...+..+|..|+.+-+.....-..+..-..+++++.-|+....+|......+.+..-+.-.+
T Consensus        60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~  139 (188)
T PF03962_consen   60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEK  139 (188)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            33455567778888888888888888888876653322111122334688888888888888888887666655544444


Q ss_pred             HHH
Q psy4946         146 LEG  148 (165)
Q Consensus       146 Ler  148 (165)
                      +..
T Consensus       140 ~~~  142 (188)
T PF03962_consen  140 LKE  142 (188)
T ss_pred             HHH
Confidence            433

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.74  E-value=24  Score=27.86  Aligned_cols=62  Identities=21%  Similarity=0.269  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQD  137 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLed  137 (165)
                      +...=|.+|.++...+..++..|+.+-..-.    ..+.+.+|..+..-|.+-...|+.|+..|..
T Consensus        76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   76 ELDAEIKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444488888888888888888887553222    2346778999999999999999999998876

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=81.69  E-value=13  Score=30.54  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEG  148 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLer  148 (165)
                      +.+.-|++|+.++..|..++..|+.+-+...          .-.+|.+.  ............|...|+||..||++
T Consensus       124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e----------k~~~e~~~--~~~k~~~~ei~~lk~~~~ql~~~l~~  188 (189)
T PF10211_consen  124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE----------KREEELRQ--EEEKKHQEEIDFLKKQNQQLKAQLEQ  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5566788888888888888888887665322          11112211  22223344455788999999999875

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=81.65  E-value=4.4  Score=30.79  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=27.1

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946         116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTH  156 (165)
Q Consensus       116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~  156 (165)
                      .||-+||..       |.-|++||++|+.+|.+++......
T Consensus        15 EEa~LlRRk-------l~ele~eN~~l~~EL~kyk~~~g~~   48 (96)
T PF11365_consen   15 EEAELLRRK-------LSELEDENKQLTEELNKYKSKYGDL   48 (96)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            467788864       6677899999999999999877533

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.23  E-value=16  Score=28.86  Aligned_cols=62  Identities=26%  Similarity=0.446  Sum_probs=50.5

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhH--hHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946          77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRK--DELESHLASLQDSRRHLMVQLEGLMR  151 (165)
Q Consensus        77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK--~rLE~RM~iLedhnRQLe~QLerLr~  151 (165)
                      ++.|..+...|..|+..|+.+-             ..|-+|++-|+..-  .+|...+..|+..+.+|+..|+.|+.
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~-------------k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEV-------------KSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6677777888888888888754             35778898888765  78888899999999999999988875

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=81.07  E-value=17  Score=29.57  Aligned_cols=69  Identities=17%  Similarity=0.318  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL  149 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL  149 (165)
                      +...=+..|..+|..|..+|++-+.....         ....++.-=..+|+.+..|..+...||..||+|+..+..+
T Consensus        47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~---------~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~  115 (158)
T PF09744_consen   47 EHEVELELLREDNEQLETQYEREKELRKQ---------AEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNL  115 (158)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33444557777888888888776654321         1223443335778999999999999999999999665543

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=80.50  E-value=10  Score=37.31  Aligned_cols=78  Identities=23%  Similarity=0.267  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946          71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM  150 (165)
Q Consensus        71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr  150 (165)
                      .++|..|..|.+-.|.+..|+..||.+.+.-..      .-..|+.--..=||...-||-|....++.|..||.||...+
T Consensus       442 ~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~------Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr  515 (697)
T PF09726_consen  442 QELRSQISSLTNNERSLKSELSQLRQENEQLQN------KLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER  515 (697)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467778888888788999999999988873321      11233333333466678899999999999999999999998


Q ss_pred             HHHh
Q psy4946         151 RLLK  154 (165)
Q Consensus       151 ~LL~  154 (165)
                      +-=+
T Consensus       516 k~r~  519 (697)
T PF09726_consen  516 KARK  519 (697)
T ss_pred             HHHh
Confidence            6544

; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	7e-04

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 46  AAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLES-KNR--EIMREIARLRRQQELEG 102
           A  L      +      G +S       R+L  Q+ S +     +   +  L   Q+   
Sbjct: 54  ARALDLRKGELRSKDLPGIISTWQEL--RQLREQIRSLEEEKEAVTEAVRALVVNQDNSQ 111

Query: 103 VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQL 146
                     +L +  R +R +   L    A L++      ++L
Sbjct: 112 --VQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	92.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.55
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.31
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	88.05
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	87.03
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	85.52
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	85.08
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	84.9
3m48_A	33	General control protein GCN4; leucine zipper, synt	84.79
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	83.13
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	82.62
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	82.43
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	82.34
1uo4_A	34	General control protein GCN4; four helix bundle, c	82.11
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	81.07
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	80.82

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=92.76  E-value=0.61  Score=36.98  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946          70 SRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL  149 (165)
Q Consensus        70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL  149 (165)
                      .+.+...|..|+.+...+..+|..|+..-....      .....|-.|.-.|+-+-.-+|.++..|++-|++|   ++|+
T Consensus        63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~------K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L---V~RW  133 (152)
T 3a7p_A           63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKN------KNTERLNAALISGTIENNVLQQKLSDLKKEHSQL---VARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            366788999999999999999999987543222      1345688999999999999999999999999988   5566


Q ss_pred             HHH
Q psy4946         150 MRL  152 (165)
Q Consensus       150 r~L  152 (165)
                      |+-
T Consensus       134 M~r  136 (152)
T 3a7p_A          134 LKK  136 (152)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.55  E-value=2.9  Score=36.56  Aligned_cols=71  Identities=17%  Similarity=0.175  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR  151 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~  151 (165)
                      .+++.+.+++++...+.+++++++.+-+             +..++++-|++.+.+||.+....++...+|..+++.+++
T Consensus       506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~  572 (597)
T 3oja_B          506 NLNKVFTHLKERQAFKLRETQARRTEAD-------------AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ  572 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhh-------------hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            3344555555555555555555554332             456777777788888888887777777777777777666


Q ss_pred             HHhh
Q psy4946         152 LLKT  155 (165)
Q Consensus       152 LL~~  155 (165)
                      -|++
T Consensus       573 ~~~~  576 (597)
T 3oja_B          573 KVKQ  576 (597)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.31  E-value=1.5  Score=43.08  Aligned_cols=32  Identities=25%  Similarity=0.283  Sum_probs=24.0

Q ss_pred             HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946         123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK  154 (165)
Q Consensus       123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~  154 (165)
                      +.+++|+.++..|++.|..|+.|+..|...+.
T Consensus      1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A         1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788888888888888888888875444

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=88.05  E-value=4.2  Score=30.06  Aligned_cols=74  Identities=22%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc----cCC-----CCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRRQQELEGV----CAS-----GFEDNPALMSELRALRMRKDELESHLASLQDSRRHL  142 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~----~~~-----~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQL  142 (165)
                      .++.-|..||-||-.|.++++.|..+-+....    .+.     +-..||.-.|    ..++|..+|           +|
T Consensus        16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a----~~~~~~~~e-----------~L   80 (100)
T 1go4_E           16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVA----RQRLREDHS-----------QL   80 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHH----HHHHHHHHH-----------HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHH----HHHHHHHHH-----------HH
Confidence            66889999999999999999999987775221    121     2246777664    334454444           37


Q ss_pred             HHHHHHHHHHHhhcCCCC
Q psy4946         143 MVQLEGLMRLLKTHQGTS  160 (165)
Q Consensus       143 e~QLerLr~LL~~~~~~s  160 (165)
                      ....++|+..+..-..|.
T Consensus        81 q~E~erLr~~v~~lEeg~   98 (100)
T 1go4_E           81 QAECERLRGLLRAMERGG   98 (100)
T ss_dssp             HHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            788889998888665543

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=87.03  E-value=1.6  Score=29.65  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             HHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946         120 ALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ  157 (165)
Q Consensus       120 lLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~  157 (165)
                      -|+|-+.-|=++.+-|+.++-+-+...+||.+||+++.
T Consensus        15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHg   52 (58)
T 3a2a_A           15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHG   52 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            57789999999999999999999999999999999875

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=85.52  E-value=0.91  Score=29.77  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946         123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK  154 (165)
Q Consensus       123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~  154 (165)
                      +|-+.||.+...|+..|..|..|+..|.+.+.
T Consensus        22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A           22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34589999999999999999999999987654

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=85.08  E-value=9.3  Score=29.88  Aligned_cols=79  Identities=13%  Similarity=0.195  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh---cccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946          71 RAQRELVSQLESKNREIMREIARLRRQQELE---GVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLE  147 (165)
Q Consensus        71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~---~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLe  147 (165)
                      .-.++++++|++.-..+-.|+++|..+--..   .......+-+|.+.+-+..+|+   .+++..+-+.+..++|..||+
T Consensus        25 ~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~---q~~~ek~~r~e~k~~l~~ql~  101 (150)
T 4dci_A           25 TWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQ---QVAGKRSELEEQKRNLLQQQA  101 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            4557788888888888888888888754221   1111111234666655555544   578888899999999999999


Q ss_pred             HHHHH
Q psy4946         148 GLMRL  152 (165)
Q Consensus       148 rLr~L  152 (165)
                      .+..|
T Consensus       102 qv~~L  106 (150)
T 4dci_A          102 QVREL  106 (150)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            88775

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=84.90  E-value=1.2  Score=29.88  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946         123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK  154 (165)
Q Consensus       123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~  154 (165)
                      +|-.+||.+...|+..|..|..++..|+++|.
T Consensus        30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34578999999999999999999999998875

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=84.79  E-value=1.4  Score=26.92  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946         126 DELESHLASLQDSRRHLMVQLEGLMRLLKT  155 (165)
Q Consensus       126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~~  155 (165)
                      ..||.+.-.|-..|..|+.+..||+.||.+
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~   32 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKLVGE   32 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence            468999999999999999999999999975

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=83.13  E-value=3.4  Score=27.06  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             HHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946         120 ALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ  157 (165)
Q Consensus       120 lLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~  157 (165)
                      -|++--+.|=+|...||...-+++...+||.+||++.+
T Consensus         8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHg   45 (48)
T 3vmx_A            8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNG   45 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcC
Confidence            35677788999999999999999999999999999875

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=82.62  E-value=11  Score=26.88  Aligned_cols=56  Identities=23%  Similarity=0.424  Sum_probs=32.1

Q ss_pred             HHHHHHhhhhHHHHH-------HHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946          75 ELVSQLESKNREIMR-------EIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLM  143 (165)
Q Consensus        75 ~lIa~LE~eNR~l~~-------EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe  143 (165)
                      +++.+||.|-.....       ||+.||.+..             .|-.|...+|..+..|+..-..|.+-...-.
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~-------------~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq   68 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNN-------------SLSQEVQNAQHQREELERENNHLKEQQNGWQ   68 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            356677777655444       6777776543             4556666666666555555555554444433

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=82.43  E-value=2.6  Score=25.85  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=27.6

Q ss_pred             hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946         124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKT  155 (165)
Q Consensus       124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~  155 (165)
                      |-..||.+.-.|=..|..|+.+..||+.||..
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~~   33 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVXE   33 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            45678888888888999999999999999863

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=82.34  E-value=2.3  Score=28.81  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946          72 AQRELVSQLESKNREIMREIARLRR   96 (165)
Q Consensus        72 e~~~lIa~LE~eNR~l~~EieRLr~   96 (165)
                      .+-.=|.+||.-+.+.-+||+||..
T Consensus        22 ~L~~kv~~Le~~c~e~eQEieRL~~   46 (58)
T 3a2a_A           22 QLAAKIQHLEFSCSEKEQEIERLNK   46 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455688999999999999999985

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=82.11  E-value=2.1  Score=26.24  Aligned_cols=30  Identities=17%  Similarity=0.263  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946         126 DELESHLASLQDSRRHLMVQLEGLMRLLKT  155 (165)
Q Consensus       126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~~  155 (165)
                      ..||.+.-.|-..|..|+.+..||+.||.+
T Consensus         4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~   33 (34)
T 1uo4_A            4 KQIEDKGEEILSKLYHIENELARIKKLLGE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence            568888888888999999999999999975

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=81.07  E-value=2.4  Score=26.27  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=28.9

Q ss_pred             hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946         124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKTH  156 (165)
Q Consensus       124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~  156 (165)
                      |-..||.+.-.|...+..|+.+..||+.+|...
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~   34 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKENAEC   34 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence            456799999999999999999999999999753

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=80.82  E-value=3.2  Score=25.43  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946         124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKT  155 (165)
Q Consensus       124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~  155 (165)
                      |-..||.+.-.|-..|..|+.+..||+.||..
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~   33 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXKLLXE   33 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence            45678888888888899999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	89.56

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=89.56  E-value=0.34  Score=33.13  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=39.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhc--ccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHh
Q psy4946          76 LVSQLESKNREIMREIARLRRQQELEG--VCASGFEDNPALMSELRALRMRKDELESHLASLQDS  138 (165)
Q Consensus        76 lIa~LE~eNR~l~~EieRLr~q~e~~~--~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedh  138 (165)
                      -|-.|..+.|.++.+++.|+.+.-..+  ..........++++|++.|...-..||+....+++.
T Consensus        29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~   93 (110)
T d1seta1          29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR   93 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355889999999999999998774321  111111223457777777766665555555444433