Psyllid ID: psy4957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MNSALQQVKVNLTWDETDPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCEDV
Secondary Structure (PSIPRED)
cccccccEEEEcccccccHHHHHHHHHHccccccccccEEEEcccccccccccEEEEEEEcccccEEEcccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEccccccccHHHHHHccccccccHHcEEEccHHHHHHcccccEEEEEEEccccccEHccccccHHHHHHHHHccccccccccHHHHcccccccHHHHHHHHHHHHHcccEEEEEcEEEEEEcccEEEEEccc
Coil and Loop (DISEMBL)
MNSALQQVKVNltwdetdpDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLNdniwadgfnidpeLIRDYFYRFlyqpqdreypdlcqlpdlneTTLLENLRARFNAGHIYTYVGSILiavnpfklffcedv
Flexible Loop (DISEMBL)
mnsalqqvkvnltwdetdpdRVEAVSKlmsgdvdeanLKTYlatsseeegkRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCEDV
Low Complexity Region (SEG)
MNSALQQVKVNLTWDETDPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCEDV
Disordered region (IsUnstruct)
***************************************************RDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFC***
Disordered Region (DISOPRED)
***************ET**DR******LMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDP*****************EYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCEDV
Disordered Region (DISEMBL)
MNSALQQVKVNLTWDETDPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCEDV
Disordered Region (DISPRO)
MNSALQQVKVNLTWDETDPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSALQQVKVNLTWDETDPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCEDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9Z1N3	2626	Unconventional myosin-IXa	yes	N/A	0.601	0.032	0.527	6e-17
Q8C170	2542	Unconventional myosin-IXa	no	N/A	0.601	0.033	0.527	6e-17
B2RTY4	2548	Unconventional myosin-IXa	yes	N/A	0.601	0.033	0.516	2e-16
Q9QY06	2114	Unconventional myosin-IXb	no	N/A	0.370	0.025	0.537	4e-10
Q13459	2157	Unconventional myosin-IXb	no	N/A	0.384	0.025	0.527	5e-10
Q63358	1980	Unconventional myosin-IXb	no	N/A	0.370	0.026	0.537	8e-10
Q9UKN7	3530	Unconventional myosin-XV	no	N/A	0.384	0.015	0.509	1e-09
Q9QZZ4	3511	Unconventional myosin-XV	no	N/A	0.342	0.013	0.549	3e-09
Q9TW28	1737	Myosin-M heavy chain OS=D	yes	N/A	0.412	0.033	0.375	6e-08
P47808	1577	High molecular weight for	N/A	N/A	0.321	0.029	0.521	1e-07

>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 53  DFLFYLREKLNDNIWADG-----FNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETT 107
           D+ F LREK  D     G       +  E  R     FL QPQ +++ DLC LPDLNE T
Sbjct: 102 DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDDLCSLPDLNEKT 161

Query: 108 LLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           LLENLR RF    IYTYVGSILIA+NPFK  
Sbjct: 162 LLENLRNRFKHEKIYTYVGSILIAINPFKFL 192

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho by stimulating it's GTPase activity in neurons, has a role in the regulation of neuronal morphology and function.
Rattus norvegicus (taxid: 10116)

>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 53  DFLFYLREKLNDNIWADG-----FNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETT 107
           D+ F LREK  D     G       +  E  R     FL QPQ +++ DLC LPDLNE T
Sbjct: 102 DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDDLCSLPDLNEKT 161

Query: 108 LLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           LLENLR RF    IYTYVGSILIA+NPFK  
Sbjct: 162 LLENLRNRFKHEKIYTYVGSILIAINPFKFL 192

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Mus musculus (taxid: 10090)

>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 53  DFLFYLREKLNDNIWADG-----FNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETT 107
           D+ F LREK  D     G       +  E  R     FL QPQ +++ DLC LPDLNE T
Sbjct: 102 DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDDLCSLPDLNEKT 161

Query: 108 LLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           LLENLR RF    IYTYVGSILI +NPFK  
Sbjct: 162 LLENLRNRFKHEKIYTYVGSILIVINPFKFL 192

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Homo sapiens (taxid: 9606)

>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 85  FLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
            L +PQ  ++ DLC LP+L E  LL+NL+ RF    IYTY GSIL+A+NPFK  
Sbjct: 140 LLPRPQ-ADFDDLCNLPELTEANLLQNLKLRFMQQKIYTYAGSILVAINPFKFL 192

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Mus musculus (taxid: 10090)

>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 36/55 (65%)

Query: 84  RFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           R L   Q  ++ DLC LP+L E  LL+NL+ RF    IYTY GSIL+A+NPFK  
Sbjct: 138 RGLLPRQQADFDDLCNLPELTEGNLLKNLKHRFLQQKIYTYAGSILVAINPFKFL 192

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Homo sapiens (taxid: 9606)

>sp|Q63358|MYO9B_RAT Unconventional myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 85  FLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
            L +PQ  ++ DLC LP+LNE  LL++L+ RF    IYTY GSIL+A+NPFK  
Sbjct: 140 LLPRPQA-DFDDLCNLPELNEANLLQSLKLRFVQQKIYTYAGSILVAINPFKFL 192

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Rattus norvegicus (taxid: 10116)

>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 84   RFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
            RF  Q  +    D+ QL DL ETT+L NL+ RF    IYTY+GSIL++VNP+++F
Sbjct: 1214 RFREQHGEDGVEDMTQLEDLQETTVLSNLKIRFERNLIYTYIGSILVSVNPYQMF 1268

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Required for the arrangement of stereocilia in mature hair bundles.

Homo sapiens (taxid: 9606)

>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 2/51 (3%)

Query: 90   QDRE--YPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
            Q RE    D+ QL DL ETT+L NL+ RF    IYTY+GSIL++VNP+++F
Sbjct: 1202 QHREDGVEDMTQLEDLQETTVLANLKTRFERNLIYTYIGSILVSVNPYRMF 1252

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity). Required for the arrangement of stereocilia in mature hair bundles.

Mus musculus (taxid: 10090)

>sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium discoideum GN=myoM PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 5/64 (7%)

Query: 73  IDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAV 132
           I+ +LI++Y      Q  D+++ D+ ++ DL+E  +L NL  R+ +  IYTY+G++LI++
Sbjct: 45  INEQLIQNY-----NQSDDKDFSDMVEIQDLSEAIILNNLGLRYKSDQIYTYIGNVLISI 99

Query: 133 NPFK 136
           NP+K
Sbjct: 100 NPYK 103

Myosins are actin-based motor molecules with ATPase activity. Involved in macropinocytosis and remodeling of actin cytoskeleton.

Dictyostelium discoideum (taxid: 44689)

>sp|P47808|MYSH_ACACA High molecular weight form of myosin-1 OS=Acanthamoeba castellanii PE=4 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 91  DREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+   DL Q+ D+NE  ++ NLR RF    IYT +G+ILI+VNPFK
Sbjct: 74  DKSVDDLVQMDDINEAMIVHNLRKRFKNDQIYTNIGTILISVNPFK 119

Acanthamoeba castellanii (taxid: 5755)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
328701263	1931	PREDICTED: myosin-IXb isoform 2 [Acyrtho	0.587	0.043	0.857	3e-38
328701265	1863	PREDICTED: myosin-IXb isoform 3 [Acyrtho	0.580	0.044	0.867	3e-38
328701267	1776	PREDICTED: myosin-IXb isoform 4 [Acyrtho	0.587	0.047	0.857	4e-38
328701269	1847	PREDICTED: myosin-IXb isoform 1 [Acyrtho	0.587	0.045	0.857	4e-38
321455065	1839	hypothetical protein DAPPUDRAFT_64918 [D	0.671	0.052	0.708	2e-37
189234985	1843	PREDICTED: similar to myosin-rhogap prot	0.594	0.046	0.764	1e-33
270002356	2021	hypothetical protein TcasGA2_TC001372 [T	0.594	0.042	0.764	1e-33
357623270	1062	hypothetical protein KGM_18974 [Danaus p	0.818	0.110	0.552	4e-32
383855596	2288	PREDICTED: unconventional myosin-IXa-lik	0.594	0.037	0.709	4e-30
340715385	2139	PREDICTED: LOW QUALITY PROTEIN: myosin-I	0.594	0.039	0.709	8e-30

>gi|328701263|ref|XP_003241546.1| PREDICTED: myosin-IXb isoform 2 [Acyrthosiphon pisum]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 79/84 (94%)

Query: 54  FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLR 113
           + FYLREKL+D++WADGF +DP+LIRDYFYRFLYQPQDREYPDLCQLPDLNE TLL+NLR
Sbjct: 104 YRFYLREKLSDSLWADGFTMDPQLIRDYFYRFLYQPQDREYPDLCQLPDLNEQTLLDNLR 163

Query: 114 ARFNAGHIYTYVGSILIAVNPFKL 137
           ARF AGHIYTYVGSILIAVNPFK 
Sbjct: 164 ARFLAGHIYTYVGSILIAVNPFKF 187

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701265|ref|XP_003241547.1| PREDICTED: myosin-IXb isoform 3 [Acyrthosiphon pisum]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/83 (86%), Positives = 79/83 (95%)

Query: 54  FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLR 113
           + FYLREKL+D++WADGF +DP+LIRDYFYRFLYQPQDREYPDLCQLPDLNE TLL+NLR
Sbjct: 104 YRFYLREKLSDSLWADGFTMDPQLIRDYFYRFLYQPQDREYPDLCQLPDLNEQTLLDNLR 163

Query: 114 ARFNAGHIYTYVGSILIAVNPFK 136
           ARF AGHIYTYVGSILIAVNPFK
Sbjct: 164 ARFLAGHIYTYVGSILIAVNPFK 186

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701267|ref|XP_003241548.1| PREDICTED: myosin-IXb isoform 4 [Acyrthosiphon pisum]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 79/84 (94%)

Query: 54  FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLR 113
           + FYLREKL+D++WADGF +DP+LIRDYFYRFLYQPQDREYPDLCQLPDLNE TLL+NLR
Sbjct: 17  YRFYLREKLSDSLWADGFTMDPQLIRDYFYRFLYQPQDREYPDLCQLPDLNEQTLLDNLR 76

Query: 114 ARFNAGHIYTYVGSILIAVNPFKL 137
           ARF AGHIYTYVGSILIAVNPFK 
Sbjct: 77  ARFLAGHIYTYVGSILIAVNPFKF 100

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701269|ref|XP_001944223.2| PREDICTED: myosin-IXb isoform 1 [Acyrthosiphon pisum]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 79/84 (94%)

Query: 54  FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLR 113
           + FYLREKL+D++WADGF +DP+LIRDYFYRFLYQPQDREYPDLCQLPDLNE TLL+NLR
Sbjct: 104 YRFYLREKLSDSLWADGFTMDPQLIRDYFYRFLYQPQDREYPDLCQLPDLNEQTLLDNLR 163

Query: 114 ARFNAGHIYTYVGSILIAVNPFKL 137
           ARF AGHIYTYVGSILIAVNPFK 
Sbjct: 164 ARFLAGHIYTYVGSILIAVNPFKF 187

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321455065|gb|EFX66210.1| hypothetical protein DAPPUDRAFT_64918 [Daphnia pulex]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 83/96 (86%)

Query: 43  ATSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPD 102
           A + ++  + ++ FYLREKLND +W++  N DP++IRDYFYRFLYQP+DREYPDLCQLPD
Sbjct: 59  AVAPDDSQQSEYRFYLREKLNDTVWSEALNADPQVIRDYFYRFLYQPRDREYPDLCQLPD 118

Query: 103 LNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           LNE TL++NLRARF AGHIYTYVGSILIAVNPFK +
Sbjct: 119 LNEETLMDNLRARFQAGHIYTYVGSILIAVNPFKFY 154

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234985|ref|XP_968193.2| PREDICTED: similar to myosin-rhogap protein, myr [Tribolium castaneum]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 76/85 (89%)

Query: 54  FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLR 113
           + FYLREK++D  W D F +DP+LI+DYF+RFLYQP+DREYPDLCQLPDLNE TLL+NLR
Sbjct: 96  YRFYLREKISDFGWQDQFVMDPQLIKDYFHRFLYQPKDREYPDLCQLPDLNEQTLLDNLR 155

Query: 114 ARFNAGHIYTYVGSILIAVNPFKLF 138
           ARF AGHIYTYVGSILIA+NPFK +
Sbjct: 156 ARFVAGHIYTYVGSILIALNPFKFY 180

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002356|gb|EEZ98803.1| hypothetical protein TcasGA2_TC001372 [Tribolium castaneum]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 76/85 (89%)

Query: 54  FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLR 113
           + FYLREK++D  W D F +DP+LI+DYF+RFLYQP+DREYPDLCQLPDLNE TLL+NLR
Sbjct: 96  YRFYLREKISDFGWQDQFVMDPQLIKDYFHRFLYQPKDREYPDLCQLPDLNEQTLLDNLR 155

Query: 114 ARFNAGHIYTYVGSILIAVNPFKLF 138
           ARF AGHIYTYVGSILIA+NPFK +
Sbjct: 156 ARFVAGHIYTYVGSILIALNPFKFY 180

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623270|gb|EHJ74495.1| hypothetical protein KGM_18974 [Danaus plexippus]

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 86/123 (69%), Gaps = 6/123 (4%)

Query: 22  VEAVSKLMSGDVDEANLK------TYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDP 75
            E V  ++SG+  E  L         +         + + FYLREK+ D  W + F++DP
Sbjct: 59  AEVVGDMVSGECKERRLGPNESPVAVMMLWPNNNSGQYYRFYLREKIPDEPWMENFSVDP 118

Query: 76  ELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           +LI+DYF RFLYQP+DREYPDLCQLP+LNE TLL+NLRARF AG+IYTYVGSILIA+NPF
Sbjct: 119 QLIKDYFQRFLYQPKDREYPDLCQLPELNEQTLLDNLRARFAAGYIYTYVGSILIALNPF 178

Query: 136 KLF 138
           K +
Sbjct: 179 KFY 181

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855596|ref|XP_003703296.1| PREDICTED: unconventional myosin-IXa-like [Megachile rotundata]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 54  FLFYLREKLNDNIWADG-FNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENL 112
           + FYLR+K +D +W+D  F +DP+L++DYF RFLYQP+D+EYPDLCQLPDLNE TLL+NL
Sbjct: 97  YRFYLRKKQSDYLWSDSRFPMDPQLLKDYFNRFLYQPRDKEYPDLCQLPDLNEQTLLDNL 156

Query: 113 RARFNAGHIYTYVGSILIAVNPFKLF 138
           RARF AG+IYTYVGSILIA+NPFK +
Sbjct: 157 RARFLAGNIYTYVGSILIALNPFKFY 182

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715385|ref|XP_003396195.1| PREDICTED: LOW QUALITY PROTEIN: myosin-IXa-like [Bombus terrestris]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 54  FLFYLREKLNDNIWADG-FNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENL 112
           + FYLR+K  D +W+D  F +DP+L++DYF RFLYQP+D+EYPDLCQLPDLNE TLL+NL
Sbjct: 97  YRFYLRKKQPDYLWSDSRFPMDPQLLKDYFNRFLYQPRDKEYPDLCQLPDLNEQTLLDNL 156

Query: 113 RARFNAGHIYTYVGSILIAVNPFKLF 138
           RARF AG+IYTYVGSILIA+NPFK +
Sbjct: 157 RARFLAGNIYTYVGSILIALNPFKFY 182

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
WB|WBGene00002040	1880	hum-7 [Caenorhabditis elegans	0.405	0.030	0.672	9.4e-16
UNIPROTKB|G3MXH1	1104	Bt.27781 "Uncharacterized prot	0.657	0.085	0.5	4.4e-15
UNIPROTKB|G3MXE8	1951	Bt.27781 "Uncharacterized prot	0.657	0.048	0.5	8.9e-15
UNIPROTKB|E1BR51	2628	Gga.54670 "Uncharacterized pro	0.657	0.035	0.5	9.8e-15
MGI|MGI:107735	2542	Myo9a "myosin IXa" [Mus muscul	0.657	0.036	0.5	1.2e-14
RGD|621395	2626	Myo9a "myosin IXA" [Rattus nor	0.657	0.035	0.5	1.3e-14
UNIPROTKB|Q9Z1N3	2626	Myo9a "Unconventional myosin-I	0.657	0.035	0.5	1.3e-14
UNIPROTKB|E1BKW7	2637	Bt.27781 "Uncharacterized prot	0.657	0.035	0.5	1.3e-14
UNIPROTKB|H3BRD5	2396	MYO9A "Unconventional myosin-I	0.657	0.039	0.49	3e-14
UNIPROTKB|B2RTY4	2548	MYO9A "Unconventional myosin-I	0.657	0.036	0.49	3.2e-14

WB|WBGene00002040 hum-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 213 (80.0 bits), Expect = 9.4e-16, P = 9.4e-16
 Identities = 39/58 (67%), Positives = 45/58 (77%)

Query:    81 YFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
             +  +FL QPQDREY DLC LP+L E TLL+NLR RF  GHIYTY+G IL+AVNPF  F
Sbjct:   156 FLTKFLVQPQDREYADLCNLPELTEQTLLDNLRERFANGHIYTYIGPILVAVNPFCFF 213

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0060002 "plus-end directed microfilament motor activity" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IPI

GO:0033275 "actin-myosin filament sliding" evidence=IDA

UNIPROTKB|G3MXH1 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 50/100 (50%), Positives = 61/100 (61%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ +++ D
Sbjct:    67 MALENRLSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDD 125

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILIA+NPFK
Sbjct:   126 LCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIAINPFK 165

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|G3MXE8 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 8.9e-15, P = 8.9e-15
 Identities = 50/100 (50%), Positives = 61/100 (61%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ +++ D
Sbjct:    89 MALENRLSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDD 147

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILIA+NPFK
Sbjct:   148 LCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIAINPFK 187

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|E1BR51 Gga.54670 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 9.8e-15, P = 9.8e-15
 Identities = 50/100 (50%), Positives = 60/100 (60%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ ++Y D
Sbjct:    93 MALENRTSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMVERGFLPQPQQKDYDD 151

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILI +NPFK
Sbjct:   152 LCGLPDLNEKTLLENLRNRFKQEKIYTYVGSILIVINPFK 191

GO:0003774 "motor activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:107735 Myo9a "myosin IXa" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 50/100 (50%), Positives = 61/100 (61%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ +++ D
Sbjct:    92 MALENRLSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDD 150

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILIA+NPFK
Sbjct:   151 LCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIAINPFK 190

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|621395 Myo9a "myosin IXA" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 50/100 (50%), Positives = 61/100 (61%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ +++ D
Sbjct:    92 MALENRLSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDD 150

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILIA+NPFK
Sbjct:   151 LCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIAINPFK 190

GO:0003674 "molecular_function" evidence=ND

GO:0003774 "motor activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9Z1N3 Myo9a "Unconventional myosin-IXa" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 50/100 (50%), Positives = 61/100 (61%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ +++ D
Sbjct:    92 MALENRLSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDD 150

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILIA+NPFK
Sbjct:   151 LCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIAINPFK 190

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|E1BKW7 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 50/100 (50%), Positives = 61/100 (61%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ +++ D
Sbjct:    92 MALENRLSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDD 150

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILIA+NPFK
Sbjct:   151 LCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIAINPFK 190

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|H3BRD5 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 49/100 (49%), Positives = 60/100 (60%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ +++ D
Sbjct:    92 MALENRLSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDD 150

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILI +NPFK
Sbjct:   151 LCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIVINPFK 190

GO:0003774 "motor activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B2RTY4 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 49/100 (49%), Positives = 60/100 (60%)

Query:    42 LATSSEEEGKRDFLFYLREK-LNDNIWADGFN----IDPELIRDYFYRFLYQPQDREYPD 96
             +A  +   G+ D+ F LREK L+ +I          +  E  R     FL QPQ +++ D
Sbjct:    92 MALENRLSGE-DYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMMERGFLPQPQQKDFDD 150

Query:    97 LCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             LC LPDLNE TLLENLR RF    IYTYVGSILI +NPFK
Sbjct:   151 LCSLPDLNEKTLLENLRNRFKHEKIYTYVGSILIVINPFK 190

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016461 "unconventional myosin complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007601 "visual perception" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2RTY4	MYO9A_HUMAN	No assigned EC number	0.5164	0.6013	0.0337	yes	N/A
Q9Z1N3	MYO9A_RAT	No assigned EC number	0.5274	0.6013	0.0327	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	2e-25
cd00124	679	cd00124, MYSc, Myosin motor domain	8e-18
smart00242	677	smart00242, MYSc, Myosin	5e-16
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	9e-14
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	1e-12
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	4e-12
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	1e-11
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	7e-11
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	3e-10
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	5e-10
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	1e-09
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	2e-09
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	4e-08
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	6e-08
cd01386	767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	1e-07
COG5638	622	COG5638, COG5638, Uncharacterized conserved protei	1e-04
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	4e-04

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score =  100 bits (250), Expect = 2e-25
 Identities = 37/53 (69%), Positives = 40/53 (75%)

Query: 86  LYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           L Q Q REY DLC LP+L E TLL+NLR RF  GHIYTY GSIL+AVNPFK  
Sbjct: 1   LLQRQQREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFL 53

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 26/43 (60%), Positives = 29/43 (67%)

Query: 94  YPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
             DL  LP LNE T+L NLR R+    IYTY G ILIAVNP+K
Sbjct: 2   VDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYK 44

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score = 73.3 bits (181), Expect = 5e-16
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 88  QPQDREYP-DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
            P   E   DL  L  LNE  +L NL+ R+    IYTY+G +L+AVNP+K
Sbjct: 1   NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYK 50

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score = 66.5 bits (162), Expect = 9e-14
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           D+ QL DL ETT+L NL+ RF    IYTY+GSIL++VNP+K+F
Sbjct: 5   DMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMF 47

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 95  PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
            DL  L  LNET++L NL+ R+    IYTY G +LI+VNP+K
Sbjct: 2   EDLAALTQLNETSVLHNLKKRYTGDLIYTYSGLVLISVNPYK 43

Length = 679

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           ++  D C L  LNE TLL N+R R++   IYTYV +ILIAVNP+ 
Sbjct: 4   KDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYF 48

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKL 137
           D+  L DL+E  +L NL  R+    IYTY GSIL+AVNP+++
Sbjct: 4   DMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQI 45

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           DL +L  LNE  +L NL  R+N G IYTY G +LIAVNP++
Sbjct: 70  DLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYR 110

Length = 1463

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           DL  L  ++E  ++ENL+ RF    IYTY+G +LI+VNPFK
Sbjct: 4   DLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFK 44

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  L+E  +L+NL+ R+    IYTY G+ILIAVNPF+
Sbjct: 5   DMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQ 45

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE ++L NLR R+ +  IYTY G   +AVNP+K
Sbjct: 9   DMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYK 49

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 20/40 (50%), Positives = 26/40 (65%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           DL  L  L+E  +L NLR RF    IYTY G +L+A+NP+
Sbjct: 4   DLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPY 43

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           DL QL  LNE ++L NL+ R++   IYT  G +L+AVNPFK
Sbjct: 12  DLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFK 52

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           DL  L  L+E T++E L+ R+    IYTYVG ILIAVNPF+
Sbjct: 4   DLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQ 44

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNP 134
           DL  L  LNE+++L  LR R+ A  I+T  G  L+ +NP
Sbjct: 4   DLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNP 42

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 767

>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function unknown]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 4   ALQQVKVNLTWDETDPDRVEAVSK-LMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKL 62
           ALQ  KV L+WD  DP R +   +      + + +   Y A+   +E     +    +KL
Sbjct: 325 ALQHSKVKLSWDAEDPHRKDLCKEAFTDDGIRDKDFSAYTASKLSDEDDDSVMESKMQKL 384

Query: 63  NDNIWAD-GFNIDPELIRD 80
                 D G N +   + D
Sbjct: 385 FSEKEIDFGLNSELVDMSD 403

Length = 622

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 94  YPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           Y D+  LP  N   +L+ L+ R+    IYT    +L+A+NPFK
Sbjct: 98  YGDIGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFK 140

Length = 821

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG0161|consensus	1930		99.64
COG5022	1463	Myosin heavy chain [Cytoskeleton]	99.6
PTZ00014	821	myosin-A; Provisional	99.55
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	99.48
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	99.47
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	99.47
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	99.45
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	99.45
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	99.45
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	99.45
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	99.44
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	99.42
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	99.41
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	99.4
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	99.4
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	99.37
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	99.36
COG5638	622	Uncharacterized conserved protein [Function unknow	99.32
KOG0160|consensus	862		99.17
KOG0162|consensus	1106		99.16
KOG0164|consensus	1001		99.13
KOG2318|consensus	650		99.09
KOG0163|consensus	1259		99.06
KOG4229|consensus	1062		98.5
cd01779	105	Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb	85.81

>KOG0161|consensus

Probab=99.64  E-value=1.4e-16  Score=154.21  Aligned_cols=56  Identities=32%  Similarity=0.558  Sum_probs=54.5

Q ss_pred             CCCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          87 YQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        87 ~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      .||..+.++||+.|++||+++||+||+.||..+.||||+|.+||+||||+++|||+
T Consensus        77 NPPkfdk~eDMa~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lpiYt  132 (1930)
T KOG0161|consen   77 NPPKFDKVEDMAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLPIYT  132 (1930)
T ss_pred             CCCCccccccHHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCCCCC
Confidence            67888999999999999999999999999999999999999999999999999997

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=99.60  E-value=5.9e-16  Score=145.53  Aligned_cols=88  Identities=31%  Similarity=0.445  Sum_probs=69.6

Q ss_pred             ccceEeeecccCCccccCCcccCch----h--------------hhhhh---hcccCCCCCCCCCCcCCCCCCChHHHHH
Q psy4957          52 RDFLFYLREKLNDNIWADGFNIDPE----L--------------IRDYF---YRFLYQPQDREYPDLCQLPDLNETTLLE  110 (143)
Q Consensus        52 ~~~r~~l~~~~~~~~w~~~~~~~~~----~--------------~~~~~---~~~~~~~~~~~~~Dl~~L~~l~e~~vl~  110 (143)
                      .|...|..+  .+..|+.+..++..    .              +....   .+- ..|..++++||+.|++||||+|++
T Consensus         8 ~g~~~w~p~--~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~P~~~~vdDLt~LSyLNEpsVl~   84 (1463)
T COG5022           8 VGSGCWIPD--EEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRI-KLPKFDGVDDLTELSYLNEPAVLH   84 (1463)
T ss_pred             cCceeeeec--cccceeeeeechhhhhccccccchhhccCcccceeehhcccccc-cCccccCchhhhhhhccCcHHHHH
Confidence            467788888  56678887655210    1              00000   111 256788999999999999999999


Q ss_pred             HHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957         111 NLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       111 ~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +|+.||.+++||||+|.+|||||||+.+|||+
T Consensus        85 nL~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt  116 (1463)
T COG5022          85 NLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYT  116 (1463)
T ss_pred             HHHHHhhcCceeEEeeeEEEEecCcccCCCcc
Confidence            99999999999999999999999999999997

>PTZ00014 myosin-A; Provisional

Probab=99.55  E-value=5.9e-15  Score=135.24  Aligned_cols=92  Identities=25%  Similarity=0.370  Sum_probs=68.4

Q ss_pred             cccceEeeec-----ccCCccccCCccc---Cchhhh----------h-hh--hc-ccCCCC--CCCCCCcCCCCCCChH
Q psy4957          51 KRDFLFYLRE-----KLNDNIWADGFNI---DPELIR----------D-YF--YR-FLYQPQ--DREYPDLCQLPDLNET  106 (143)
Q Consensus        51 ~~~~r~~l~~-----~~~~~~w~~~~~~---~~~~~~----------~-~~--~~-~~~~~~--~~~~~Dl~~L~~l~e~  106 (143)
                      ..|..+|...     .+++..|+.|+++   +++.+.          . .+  .. +...|.  ...++||+.|+++||+
T Consensus        31 ~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~  110 (821)
T PTZ00014         31 LKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIP  110 (821)
T ss_pred             ccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHH
Confidence            3578888864     4567778887655   111110          0 01  11 122232  3468999999999999


Q ss_pred             HHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957         107 TLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       107 ~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +||++|+.||..+.||||+|++|||||||+.+|+|+
T Consensus       111 ~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~  146 (821)
T PTZ00014        111 CVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTT  146 (821)
T ss_pred             HHHHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCc
Confidence            999999999999999999999999999999999996

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=99.48  E-value=2.8e-14  Score=128.99  Aligned_cols=55  Identities=38%  Similarity=0.629  Sum_probs=52.5

Q ss_pred             CCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          88 QPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        88 ~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +|..++++||+.|.++||++||++|+.||.++.||||+|+||||||||+.+|+|+
T Consensus         1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~   55 (693)
T cd01377           1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYT   55 (693)
T ss_pred             CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCC
Confidence            4667899999999999999999999999999999999999999999999999996

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=99.47  E-value=4.6e-14  Score=127.57  Aligned_cols=55  Identities=65%  Similarity=1.063  Sum_probs=52.1

Q ss_pred             CCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          88 QPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        88 ~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      .....+++||+.|+++||++||++|+.||.++.||||+|++|||||||+.+|+|+
T Consensus         3 ~~~~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~   57 (692)
T cd01385           3 QRQQREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYN   57 (692)
T ss_pred             CCCcCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCC
Confidence            4556789999999999999999999999999999999999999999999999996

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=99.47  E-value=4.6e-14  Score=127.27  Aligned_cols=55  Identities=40%  Similarity=0.489  Sum_probs=52.3

Q ss_pred             CCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          88 QPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        88 ~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +|...+++||+.|+++||++|+++|+.||..+.||||+|++|||||||+.+|+|+
T Consensus         4 p~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~   58 (677)
T cd01383           4 PDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYG   58 (677)
T ss_pred             cccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCC
Confidence            4556799999999999999999999999999999999999999999999999996

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=99.45  E-value=5.8e-14  Score=126.53  Aligned_cols=50  Identities=42%  Similarity=0.678  Sum_probs=48.6

Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          93 EYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        93 ~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +++||+.|+++||++||++|+.||..+.||||+|++|||||||+.+|+|+
T Consensus         1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~   50 (671)
T cd01381           1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYT   50 (671)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCC
Confidence            57899999999999999999999999999999999999999999999996

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=99.45  E-value=6.1e-14  Score=126.50  Aligned_cols=50  Identities=52%  Similarity=0.811  Sum_probs=48.9

Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          93 EYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        93 ~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +++||+.|+++||++||++|+.||..+.||||+|++|||||||+.+|+|+
T Consensus         2 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~   51 (677)
T cd01387           2 GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYG   51 (677)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCC
Confidence            68999999999999999999999999999999999999999999999997

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=99.45  E-value=5.8e-14  Score=126.91  Aligned_cols=50  Identities=40%  Similarity=0.627  Sum_probs=48.6

Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          93 EYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        93 ~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +++||+.|+++||++||++|+.||..+.||||+|++|||||||+.+|+|+
T Consensus         1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~   50 (691)
T cd01380           1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYG   50 (691)
T ss_pred             CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCC
Confidence            57899999999999999999999999999999999999999999999996

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=99.45  E-value=6.7e-14  Score=126.18  Aligned_cols=50  Identities=42%  Similarity=0.720  Sum_probs=48.6

Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          93 EYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        93 ~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +++||+.|+++||++||++|+.||.++.||||+|++|||||||+.+|+|+
T Consensus         1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~   50 (674)
T cd01378           1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYT   50 (674)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCC
Confidence            57899999999999999999999999999999999999999999999996

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=99.44  E-value=7.5e-14  Score=125.88  Aligned_cols=51  Identities=43%  Similarity=0.709  Sum_probs=49.2

Q ss_pred             CCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCC-CCC
Q psy4957          92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFF-CED  142 (143)
Q Consensus        92 ~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lp-iY~  142 (143)
                      ++++||+.|+++||++||++|+.||.++.||||+|++|||||||+.+| ||+
T Consensus         1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~   52 (674)
T cd01384           1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYD   52 (674)
T ss_pred             CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCC
Confidence            378999999999999999999999999999999999999999999999 996

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=99.42  E-value=1.3e-13  Score=123.93  Aligned_cols=50  Identities=46%  Similarity=0.747  Sum_probs=48.3

Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          93 EYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        93 ~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +++||+.|+++||++||++|+.||.++.||||+|++|||||||+.+|+|+
T Consensus         1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~   50 (653)
T cd01379           1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYT   50 (653)
T ss_pred             CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCC
Confidence            46899999999999999999999999999999999999999999999996

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=99.41  E-value=1.6e-13  Score=125.23  Aligned_cols=49  Identities=35%  Similarity=0.472  Sum_probs=47.9

Q ss_pred             CCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          94 YPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        94 ~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ++||+.|+++||++|+++|+.||..+.||||+|++|||||||+.+|||+
T Consensus         2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~   50 (767)
T cd01386           2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYS   50 (767)
T ss_pred             cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCC
Confidence            6899999999999999999999999999999999999999999999996

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>smart00242 MYSc Myosin

Probab=99.40  E-value=2.6e-13  Score=122.45  Aligned_cols=55  Identities=40%  Similarity=0.619  Sum_probs=52.5

Q ss_pred             CCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          88 QPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        88 ~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +|...+++||+.|+++||++|+++|+.||..+.||||+|++|||||||+.+|+|+
T Consensus         2 p~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~   56 (677)
T smart00242        2 PPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYT   56 (677)
T ss_pred             CcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCC
Confidence            4667899999999999999999999999999999999999999999999999996

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=99.40  E-value=2.9e-13  Score=122.78  Aligned_cols=51  Identities=47%  Similarity=0.714  Sum_probs=49.3

Q ss_pred             CCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCC-CCC
Q psy4957          92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFF-CED  142 (143)
Q Consensus        92 ~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lp-iY~  142 (143)
                      .+++||+.|++|||++||++|+.||.++.||||+|++|||||||+.+| +|+
T Consensus         4 ~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~   55 (717)
T cd01382           4 KDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYS   55 (717)
T ss_pred             CCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCC
Confidence            478999999999999999999999999999999999999999999998 996

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.37  E-value=3.1e-13  Score=121.65  Aligned_cols=49  Identities=49%  Similarity=0.788  Sum_probs=40.3

Q ss_pred             CCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          94 YPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        94 ~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ++||+.|.++||++||++|+.||..+.||||+|++|||||||+.+|+|+
T Consensus         1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~   49 (689)
T PF00063_consen    1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYS   49 (689)
T ss_dssp             -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSS
T ss_pred             CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhh
Confidence            5899999999999999999999999999999999999999999999997

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>cd00124 MYSc Myosin motor domain

Probab=99.36  E-value=6.7e-13  Score=119.78  Aligned_cols=50  Identities=52%  Similarity=0.781  Sum_probs=48.3

Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          93 EYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        93 ~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +++||+.|+++||++|+++|+.||..+.||||+|++|||||||+.+|+|+
T Consensus         1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~   50 (679)
T cd00124           1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYG   50 (679)
T ss_pred             CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCC
Confidence            47899999999999999999999999999999999999999999999986

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>COG5638 Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=5.3e-13  Score=113.70  Aligned_cols=50  Identities=28%  Similarity=0.595  Sum_probs=45.8

Q ss_pred             CchhhhccccceeecCCChhHHHHHhhhhc-CCccccchhhhhhcCccccc
Q psy4957           1 MNSALQQVKVNLTWDETDPDRVEAVSKLMS-GDVDEANLKTYLATSSEEEG   50 (143)
Q Consensus         1 ~~~al~~s~v~ltWd~~d~~r~~~~~~~~~-~e~~e~dl~~ylas~s~d~~   50 (143)
                      +|.|||||+||||||++||+|..+++++|+ ++|.++||++|+|+..+|++
T Consensus       322 ~tdalqhs~vklswd~~~~~r~dl~k~AFt~~~i~d~dFsay~as~~sde~  372 (622)
T COG5638         322 VTDALQHSKVKLSWDAEDPHRKDLCKEAFTDDGIRDKDFSAYTASKLSDED  372 (622)
T ss_pred             hhhhhhhcccccccccCCchHHHHHHHhhcccccccchHHHHhhhhccccc
Confidence            489999999999999999999999999999 88999999999999655543

>KOG0160|consensus

Probab=99.17  E-value=2.7e-11  Score=111.13  Aligned_cols=51  Identities=41%  Similarity=0.624  Sum_probs=49.6

Q ss_pred             CCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCC-CCC
Q psy4957          92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFF-CED  142 (143)
Q Consensus        92 ~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lp-iY~  142 (143)
                      .+++|++.|+++|||+||++|+.||..+.||||.|.+|||||||+.+| +|+
T Consensus         8 ~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~   59 (862)
T KOG0160|consen    8 MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYG   59 (862)
T ss_pred             CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhcc
Confidence            799999999999999999999999999999999999999999999999 886

>KOG0162|consensus

Probab=99.16  E-value=1.8e-11  Score=110.10  Aligned_cols=52  Identities=38%  Similarity=0.641  Sum_probs=50.1

Q ss_pred             CCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          91 DREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        91 ~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ..+++||+.|+.+++.+|.+||+.||+++.||||+|++||+||||+.+|+|+
T Consensus        17 ~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft   68 (1106)
T KOG0162|consen   17 HVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFT   68 (1106)
T ss_pred             eccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccch
Confidence            4689999999999999999999999999999999999999999999999986

>KOG0164|consensus

Probab=99.13  E-value=3.7e-11  Score=107.91  Aligned_cols=54  Identities=35%  Similarity=0.701  Sum_probs=51.3

Q ss_pred             CCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        89 ~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +...+++|+..|..+++++++.||+.||.++.||||+|.+|||||||+.++||+
T Consensus         5 ~~~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg   58 (1001)
T KOG0164|consen    5 RDEVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYG   58 (1001)
T ss_pred             ccccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccC
Confidence            445689999999999999999999999999999999999999999999999997

>KOG2318|consensus

Probab=99.09  E-value=3.9e-11  Score=105.34  Aligned_cols=49  Identities=41%  Similarity=0.756  Sum_probs=44.5

Q ss_pred             chhhhccccceeecCCChhHHHHHhhhhcC-CccccchhhhhhcCccccc
Q psy4957           2 NSALQQVKVNLTWDETDPDRVEAVSKLMSG-DVDEANLKTYLATSSEEEG   50 (143)
Q Consensus         2 ~~al~~s~v~ltWd~~d~~r~~~~~~~~~~-e~~e~dl~~ylas~s~d~~   50 (143)
                      |+|||||+|+||||+++|+|.+++.++|++ ++.+.||++|||+++++++
T Consensus       334 t~Alq~s~vkltWDE~d~~R~~l~~~kf~~~~l~d~d~~~~laS~~sde~  383 (650)
T KOG2318|consen  334 TRALQHSKVKLTWDETDPHRKKLFNEKFNGEELEDLDFSAYLASSDSDEE  383 (650)
T ss_pred             HHHHHhccccccccccCHHHHHHHHHhhcchhhhhchHHHhhcCCccccc
Confidence            689999999999999999999999999995 5889999999999776544

>KOG0163|consensus

Probab=99.06  E-value=8.9e-11  Score=106.09  Aligned_cols=51  Identities=45%  Similarity=0.742  Sum_probs=48.5

Q ss_pred             CCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCC-CCC
Q psy4957          92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFF-CED  142 (143)
Q Consensus        92 ~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lp-iY~  142 (143)
                      .+++|-|.|-+|||+.+|+|++.||.++.||||+.+||||||||+.++ +|+
T Consensus        57 k~veDNC~Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY~~I~~lYs  108 (1259)
T KOG0163|consen   57 KDVEDNCELMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPYQEIDGLYS  108 (1259)
T ss_pred             cccccccceeeccHHHHhhhhhhhhccCchhhhhhhhheeccchhhcccccC
Confidence            478899999999999999999999999999999999999999999988 885

>KOG4229|consensus

Probab=98.50  E-value=4e-08  Score=92.31  Aligned_cols=59  Identities=44%  Similarity=0.660  Sum_probs=55.0

Q ss_pred             cccCCCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCC-CCC
Q psy4957          84 RFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFF-CED  142 (143)
Q Consensus        84 ~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lp-iY~  142 (143)
                      ++++.+...+.+||+.|..+++..++.+|..||..+.||||.|+|+++||||+.+| ||.
T Consensus        53 ~~~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~  112 (1062)
T KOG4229|consen   53 KALHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYL  112 (1062)
T ss_pred             ccccccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCcccccccccc
Confidence            45567778899999999999999999999999999999999999999999999999 885

>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA

Probab=85.81  E-value=0.33  Score=34.23  Aligned_cols=27  Identities=19%  Similarity=0.269  Sum_probs=20.6

Q ss_pred             ccchhh------hhhcCccccc-----cccceEeeecc
Q psy4957          35 EANLKT------YLATSSEEEG-----KRDFLFYLREK   61 (143)
Q Consensus        35 e~dl~~------ylas~s~d~~-----~~~~r~~l~~~   61 (143)
                      ||-|.+      .+.+|+...+     ++||+|+||++
T Consensus        68 EwvL~p~D~pvqR~lLWPr~aqe~hp~~~gyyFlLqer  105 (105)
T cd01779          68 EWVLDPTDSPVQRVLLWPRRAQEEHPQEDGYYFLLQER  105 (105)
T ss_pred             eeecCcccCceeeEEeccHHHHhcCCCcCceEEEEecC
Confidence            676666      7888987543     47999999984

Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		2e-07
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		2e-07
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		2e-07
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		2e-07
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		2e-07
2x51_A	789	M6 Delta Insert1 Length = 789		2e-07
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		2e-07
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		2e-07
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		3e-07
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		3e-07
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		3e-07
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		3e-07
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		6e-07
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		7e-07
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		1e-06
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-06
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		1e-06
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		2e-06
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		2e-06
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		2e-06
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		2e-06
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		2e-06
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-06
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		2e-06
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		2e-06
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-06
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		2e-06
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		2e-06
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		2e-06
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-06
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-06
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-06
2y0r_X	758	Structural Basis For The Allosteric Interference Of		2e-06
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		2e-06
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		2e-06
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		2e-06
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		2e-06
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-06
2y9e_X	758	Structural Basis For The Allosteric Interference Of		2e-06
1b7t_A	835	Myosin Digested By Papain Length = 835		2e-06
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		2e-06
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		2e-06
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		2e-06
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		2e-06
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		3e-06
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		4e-06
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		4e-06
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		4e-06
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		4e-06
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		5e-06
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		5e-06
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		2e-05
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		3e-05
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		3e-04
1oe9_A	795	Crystal Structure Of Myosin V Motor With Essential		3e-04
1w8j_A	766	Crystal Structure Of Myosin V Motor Domain - Nucleo		3e-04
2w4a_M	840	Isometrically Contracting Insect Asynchronous Fligh		5e-04

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 56  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 56  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 56  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 57  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 100

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 54  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 97

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 57  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 100

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 53  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 96

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 66  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 109

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 56  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 66  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 109

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 56  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92  REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
           ++  D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+
Sbjct: 57  KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 100

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+  +  LNE ++L NLR R+ AG IYTY G   IAVNP++
Sbjct: 80  PKFEKLEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYR 127

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+  +  LNE ++L NLR R+ AG IYTY G   IAVNP++
Sbjct: 80  PKFEKLEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYR 127

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK+ 
Sbjct: 89  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKII 131

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK+ 
Sbjct: 89  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKII 131

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+  L  LNE ++L NLR+R+ +G IYTY G   IA+NP++
Sbjct: 87  DMANLTFLNEASILHNLRSRYESGFIYTYSGLFCIAINPYR 127

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 101 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 141

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 101 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 141

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 101 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 141

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 101 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 141

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 89  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 129

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 89  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 129

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 89  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 129

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 89  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 129

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+  +  LNE ++L NLR+R+ +G IYTY G   IAVNP++
Sbjct: 80  PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 127

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+  +  LNE ++L NLR+R+ +G IYTY G   IAVNP++
Sbjct: 80  PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 127

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+  +  LNE ++L NLR+R+ +G IYTY G   IAVNP++
Sbjct: 76  PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 123

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+  +  LNE ++L NLR+R+ +G IYTY G   IAVNP++
Sbjct: 75  PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 122

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+  +  LNE ++L NLR+R+ +G IYTY G   IAVNP++
Sbjct: 80  PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 127

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 77  LIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           L RD   R +  P+  +  D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 46  LPRDQIQR-MNPPKFSKAEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYK 104

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 80  PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 80  PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 80  PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 80  PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 80  PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 80  PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 95  PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           PD   L  + E   +ENL  R  + +IYTY+G ++I+ NPFK
Sbjct: 11  PDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFK 52

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 95  PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           PD   L  + E   +ENL  R  + +IYTY+G ++I+ NPFK
Sbjct: 11  PDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFK 52

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 96  DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPF 135
           DL  L  L+E  +L NL+ RF ++  IYTY G +L+A+NP+
Sbjct: 73  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPY 113

>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 96  DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPF 135
           DL  L  L+E  +L NL+ RF ++  IYTY G +L+A+NP+
Sbjct: 73  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPY 113

>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 96  DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPFK 136
           DL  L  L+E  +L NL+ RF ++  IYTY G +L+A+NP++
Sbjct: 73  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYE 114

>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 840

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 89  PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           P+  +  D+  +  L+E  +L NL+ R+ A  IYTY G   + VNP+K
Sbjct: 80  PKYDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYK 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	1e-17
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	3e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-14
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	5e-14
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-13
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-12
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-12
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	6e-12
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D C L  LNE TLL N++ R++   IYTYV +ILIAVNP+ 
Sbjct: 57  DNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 97

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score = 70.3 bits (173), Expect = 3e-15
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D   L  + E   +ENL  R  + +IYTY+G ++I+ NPFK
Sbjct: 12  DFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFK 52

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 96  DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPFK 136
           DL  L  L+E  +L NL+ RF ++  IYTY G +L+A+NP++
Sbjct: 73  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYE 114

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score = 66.9 bits (164), Expect = 5e-14
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 96  DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPFK 136
           DL  L  L+E  +L NL+ RF ++  IYTY G +L+A+NP++
Sbjct: 73  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYE 114

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 22/41 (53%), Positives = 27/41 (65%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 64  DMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYK 104

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 22/41 (53%), Positives = 27/41 (65%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 90  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 95  PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
            D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K  
Sbjct: 86  EDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQL 129

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score = 60.7 bits (148), Expect = 6e-12
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+  L  L+E  +L NL+ R+ +  IYTY G   + VNP+K
Sbjct: 89  DMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYK 129

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 58.1 bits (141), Expect = 5e-11
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+  +  LNE ++L NLR+R+ +G IYTY G   IAVNP++
Sbjct: 87  DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 127

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 51/164 (31%)

Query: 13  TWDETDPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDF--LFYLREKLNDNI---- 66
           TWD       + ++ ++   ++   L+         E ++ F  L       + +I    
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLN--VLE-------PAEYRKMFDRLSVFPP--SAHIPTIL 391

Query: 67  ----WADGFNIDPELIRDYFYRF-LYQPQDREYPDLCQLPDL---------NETTLLENL 112
               W D    D  ++ +  +++ L + Q +E      +P +         NE  L  ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES--TISIPSIYLELKVKLENEYALHRSI 449

Query: 113 RARFNA---------------GHIYTYVGSILIAVNP---FKLF 138
              +N                 + Y+++G  L  +       LF
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	99.69
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	99.69
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	99.64
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.63
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.63
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	99.62
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	99.62
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	99.62
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	99.59
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	99.59
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	99.48

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=99.69  E-value=1.1e-17  Score=155.03  Aligned_cols=89  Identities=30%  Similarity=0.423  Sum_probs=69.1

Q ss_pred             ccceEeeecccCCccccCCcccC--chh--hh------hh--h--hc--ccCCCCCCCCCCcCCCCCCChHHHHHHHHHH
Q psy4957          52 RDFLFYLREKLNDNIWADGFNID--PEL--IR------DY--F--YR--FLYQPQDREYPDLCQLPDLNETTLLENLRAR  115 (143)
Q Consensus        52 ~~~r~~l~~~~~~~~w~~~~~~~--~~~--~~------~~--~--~~--~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~R  115 (143)
                      +|.++|+++  ++..|+.|++++  ++.  ++      ..  +  ..  ...+|...+++||+.|++|||++||+||+.|
T Consensus         3 ~G~~VWv~d--~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~L~~LnE~svL~nL~~R   80 (1052)
T 4anj_A            3 DGKPVWAPH--PTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVR   80 (1052)
T ss_dssp             -CCCEEEEE--TTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHH
T ss_pred             CCCEEEEEc--CCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCcccccCCCCCHHHHHHHHHHH
Confidence            467899998  677898886541  111  10      00  0  11  1234456789999999999999999999999


Q ss_pred             hhcCcccccccCeEEEecCCCCCC-CCC
Q psy4957         116 FNAGHIYTYVGSILIAVNPFKLFF-CED  142 (143)
Q Consensus       116 f~~~~IYTy~G~iLvaVNPyk~lp-iY~  142 (143)
                      |..+.||||+|++|||||||+.+| ||+
T Consensus        81 y~~~~IYTy~G~iLIaVNPyk~lp~iY~  108 (1052)
T 4anj_A           81 YSKDRIYTYVANILIAVNPYFDIPKIYS  108 (1052)
T ss_dssp             HHTTCCEEEETTEEEEECCSSCCTTTTS
T ss_pred             HcCCCcEEeECCEEEEECCCCCccccCC
Confidence            999999999999999999999998 997

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=99.69  E-value=1.2e-17  Score=150.96  Aligned_cols=89  Identities=20%  Similarity=0.299  Sum_probs=71.3

Q ss_pred             ccceEeeecccCCccccCCccc--Cchhhh-----h---hh----hcccCCCCCCCCCCcCCCCCCChHHHHHHHHHHhh
Q psy4957          52 RDFLFYLREKLNDNIWADGFNI--DPELIR-----D---YF----YRFLYQPQDREYPDLCQLPDLNETTLLENLRARFN  117 (143)
Q Consensus        52 ~~~r~~l~~~~~~~~w~~~~~~--~~~~~~-----~---~~----~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~  117 (143)
                      .|.++|+++  ++..|+.|++.  ++..+.     +   .+    .....+|...+++||+.|++|||++||+||+.||.
T Consensus        33 ~~~~vWv~d--~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~~~~~eDl~~L~~LnE~svL~nL~~Ry~  110 (783)
T 4db1_A           33 LKKDVFVPD--DKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDRYG  110 (783)
T ss_dssp             TTTEEEEEC--SSSSEEEEEEEEECSSEEEEEETTTEEEEEEGGGCEECCCGGGTTCSBGGGCSCCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC--CCCCEEEEEEEEecCCEEEEEECCCCEEeCCHHHcccCCCCccCCcchhhccccccHHHHHHHHHHHhc
Confidence            478999998  67789988644  111111     0   00    11235566789999999999999999999999999


Q ss_pred             cCcccccccCeEEEecCCCCCCCCC
Q psy4957         118 AGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       118 ~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      .+.||||+|++|||||||+.+|||+
T Consensus       111 ~~~IYTy~G~iLvavNPyk~l~iY~  135 (783)
T 4db1_A          111 SWMIYTYSGLFCVTVNPYKWLPVYT  135 (783)
T ss_dssp             TTCCEEEETTEEEEECCSSCCSCSS
T ss_pred             CCceEEecCceeEecCCCccCCCCC
Confidence            9999999999999999999999997

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=99.64  E-value=1.6e-16  Score=143.88  Aligned_cols=89  Identities=25%  Similarity=0.436  Sum_probs=69.5

Q ss_pred             ccceEeeecccCCccccCCcccC----chh-h--h---h---hh-h-------ccc-CCCCCCCCCCcCCCCCCChHHHH
Q psy4957          52 RDFLFYLREKLNDNIWADGFNID----PEL-I--R---D---YF-Y-------RFL-YQPQDREYPDLCQLPDLNETTLL  109 (143)
Q Consensus        52 ~~~r~~l~~~~~~~~w~~~~~~~----~~~-~--~---~---~~-~-------~~~-~~~~~~~~~Dl~~L~~l~e~~vl  109 (143)
                      .|.++|+++  ++..|+.|++..    +.. +  +   +   .+ .       ..+ .+|...+++||+.|++|||++||
T Consensus         9 ~g~~vwv~~--~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL   86 (795)
T 1w7j_A            9 KYARVWIPD--PEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVL   86 (795)
T ss_dssp             TTCEEEEEE--TTTEEEEEEESSCCCTTCSEEEEECSSSSEEEEECCTTTTCCCCBCCCGGGTTCSSSTTCSCCSHHHHH
T ss_pred             cCCEEEEEC--CCCceEEEEEEeeccCCCceEEEEECCCCEEEEeccCcccccccccCcchhccccchhhhhcccHHHHH
Confidence            478999998  678898886542    111 1  0   0   00 0       112 23345789999999999999999


Q ss_pred             HHHHHHh-hcCcccccccCeEEEecCCCCCCCCC
Q psy4957         110 ENLRARF-NAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       110 ~~L~~Rf-~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ++|+.|| ..+.||||+|++|||||||+.+|||+
T Consensus        87 ~nL~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~  120 (795)
T 1w7j_A           87 HNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYG  120 (795)
T ss_dssp             HHHHHHHHHHCCCEEEETTEEEEECCSSCCSCCS
T ss_pred             HHHHHHHHhcccchhccCcceEEecCccccCcCC
Confidence            9999999 99999999999999999999999997

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.63  E-value=1.1e-16  Score=149.54  Aligned_cols=89  Identities=24%  Similarity=0.403  Sum_probs=69.9

Q ss_pred             ccceEeeecccCCccccCCcccC--chhh--h----h---hh----hcccCCCCCCCCCCcCCCCCCChHHHHHHHHHHh
Q psy4957          52 RDFLFYLREKLNDNIWADGFNID--PELI--R----D---YF----YRFLYQPQDREYPDLCQLPDLNETTLLENLRARF  116 (143)
Q Consensus        52 ~~~r~~l~~~~~~~~w~~~~~~~--~~~~--~----~---~~----~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf  116 (143)
                      .|.++|+++  ++..|+.|.+..  +..+  .    +   .+    .....+|...+++||+.|++|||++||+||+.||
T Consensus        30 ~~~~vw~~~--~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~n~~~~~~~~Dl~~l~~l~e~~vl~~L~~Ry  107 (1184)
T 1i84_S           30 AKKLVWVPS--EKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERY  107 (1184)
T ss_dssp             CTTEEEECC--TTTSSEEEEEEEEETTEEEEEETTTCCEEEEETTSCEECCCGGGTTCSBTTSSSCCCTTHHHHHHHHHH
T ss_pred             cCCeEEEEC--CCCCeEEEEEEEecCCeEEEEEcCCCcEEEeeHHHccCCCCccccccchhhhhccccHHHHHHHHHHHh
Confidence            468899998  667798886441  1111  0    0   00    1122445567999999999999999999999999


Q ss_pred             hcCcccccccCeEEEecCCCCCCCCC
Q psy4957         117 NAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       117 ~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ..+.||||+|+||||||||+.+|||+
T Consensus       108 ~~~~iyT~~g~~li~vNP~~~l~~y~  133 (1184)
T 1i84_S          108 FSGLIYTYSGLFCVVINPYKQLPIYS  133 (1184)
T ss_dssp             HHTCCEEEETTEEEEECCCSCCSCCS
T ss_pred             cCCCcEEecCcceeeeCCCcCCCCCC
Confidence            99999999999999999999999997

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.63  E-value=2.3e-16  Score=146.66  Aligned_cols=89  Identities=25%  Similarity=0.446  Sum_probs=69.6

Q ss_pred             ccceEeeecccCCccccCCcccC----chh-h--h---h--h-h-h-------ccc-CCCCCCCCCCcCCCCCCChHHHH
Q psy4957          52 RDFLFYLREKLNDNIWADGFNID----PEL-I--R---D--Y-F-Y-------RFL-YQPQDREYPDLCQLPDLNETTLL  109 (143)
Q Consensus        52 ~~~r~~l~~~~~~~~w~~~~~~~----~~~-~--~---~--~-~-~-------~~~-~~~~~~~~~Dl~~L~~l~e~~vl  109 (143)
                      .|.++|+++  ++.+|+.|++..    +.. +  .   +  . + .       +.+ .+|...+++||+.|++|||++||
T Consensus         9 ~g~~vwv~~--~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl   86 (1080)
T 2dfs_A            9 KYARVWIPD--PEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVL   86 (1080)
T ss_dssp             TTCEEEEEE--TTTEEEEEECSSCCCTTCSEEECCCSSSSCCEEECCTTTCCCCCBCCCGGGSSCSBSTTCSSCSHHHHH
T ss_pred             cCCEEEEEC--CCCceEEEEEEeeecCCCceEEEEECCCCEEEEecCCcccccccccCcccccchhhhhhhhhcchHHHH
Confidence            478999998  678899886542    111 1  0   0  0 0 0       112 23345789999999999999999


Q ss_pred             HHHHHHh-hcCcccccccCeEEEecCCCCCCCCC
Q psy4957         110 ENLRARF-NAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       110 ~~L~~Rf-~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +||+.|| ..+.||||+|++|||||||+.+|||+
T Consensus        87 ~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~  120 (1080)
T 2dfs_A           87 HNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYG  120 (1080)
T ss_dssp             HHHHHHHHTTCCCEEEETTEEEEECCSSCCSCSS
T ss_pred             HHHHHHHHhcCCchhccCceeEEecCCcccccCC
Confidence            9999999 99999999999999999999999997

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=99.62  E-value=2.2e-16  Score=143.72  Aligned_cols=89  Identities=26%  Similarity=0.401  Sum_probs=69.5

Q ss_pred             ccceEeeecccCCccccCCcccC--chhh--h----h---hh----hcccCCCCCCCCCCcCCCCCCChHHHHHHHHHHh
Q psy4957          52 RDFLFYLREKLNDNIWADGFNID--PELI--R----D---YF----YRFLYQPQDREYPDLCQLPDLNETTLLENLRARF  116 (143)
Q Consensus        52 ~~~r~~l~~~~~~~~w~~~~~~~--~~~~--~----~---~~----~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf  116 (143)
                      .|.++|+++  ++..|+.|++..  +..+  +    +   .+    .....+|...+++||+.|++|||++||++|+.||
T Consensus        30 ~~~~vWv~~--~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry  107 (837)
T 1kk8_A           30 GKKNCWVPD--EKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRY  107 (837)
T ss_dssp             TTTEEEEEE--TTTEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGSSCCSHHHHHHHHHHHH
T ss_pred             cCCEEEEEC--CCCCeeEEEEEeecCCeEEEEEcCCCceEEeeHHHccccCchhhcchhhhhhhhcccHHHHHHHHHHHH
Confidence            367899987  667898886441  1110  0    0   00    0122445567999999999999999999999999


Q ss_pred             hcCcccccccCeEEEecCCCCCCCCC
Q psy4957         117 NAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       117 ~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ..+.||||+|++|||||||+.+|||+
T Consensus       108 ~~~~IYTy~G~iLiavNPyk~l~iY~  133 (837)
T 1kk8_A          108 TSGLIYTYSGLFCIAVNPYRRLPIYT  133 (837)
T ss_dssp             HTTCCEEEETTEEEEECCSSCCSTTS
T ss_pred             hcCCceeeccceeEEeCCCcCCCCCC
Confidence            99999999999999999999999997

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=99.62  E-value=2.7e-16  Score=142.02  Aligned_cols=91  Identities=26%  Similarity=0.369  Sum_probs=69.4

Q ss_pred             ccceEeeeccc-CCccccCCcccC--chhh--h-----h-hh----hcccCCCCCCCCCCcCCCCCCChHHHHHHHHHHh
Q psy4957          52 RDFLFYLREKL-NDNIWADGFNID--PELI--R-----D-YF----YRFLYQPQDREYPDLCQLPDLNETTLLENLRARF  116 (143)
Q Consensus        52 ~~~r~~l~~~~-~~~~w~~~~~~~--~~~~--~-----~-~~----~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf  116 (143)
                      .|.++|+++.. .+..|+.|++..  +..+  +     . .+    .....+|...+++||+.|++|||++||++|+.||
T Consensus        31 ~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry  110 (770)
T 1w9i_A           31 DKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRY  110 (770)
T ss_dssp             -CCEEEECSSTTCTTCCEEEEEEEECSSEEEEECTTSCEEEEETTTCEECCCGGGTTCSBGGGCSCCCHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCcccccCceEEEEEEecCCeEEeecCCCcEEEEchHhccccCcccccchhhhhhhccCCHHHHHHHHHHHH
Confidence            57889999831 156798886441  1111  0     0 00    0122445567899999999999999999999999


Q ss_pred             hcCcccccccCeEEEecCCCCCCCCC
Q psy4957         117 NAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       117 ~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ..+.||||+|++|||||||+.+|||+
T Consensus       111 ~~~~IYTy~G~iLvavNPyk~l~iY~  136 (770)
T 1w9i_A          111 NQDLIYTYSGLFLVAVNPFKRIPIYT  136 (770)
T ss_dssp             HTTCCEEEETTEEEEECCSSCCSCCS
T ss_pred             hcCCceeccCceeEEecCCccccCCC
Confidence            99999999999999999999999997

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=99.62  E-value=2.7e-16  Score=145.24  Aligned_cols=88  Identities=26%  Similarity=0.391  Sum_probs=68.4

Q ss_pred             cceEeeecccCCccccCCcccC--chhhh------h---hh----hcccCCCCCCCCCCcCCCCCCChHHHHHHHHHHhh
Q psy4957          53 DFLFYLREKLNDNIWADGFNID--PELIR------D---YF----YRFLYQPQDREYPDLCQLPDLNETTLLENLRARFN  117 (143)
Q Consensus        53 ~~r~~l~~~~~~~~w~~~~~~~--~~~~~------~---~~----~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~  117 (143)
                      |.++|+++  ++..|+.|.+..  +..+.      +   .+    .....+|...+++||+.|++|||++||+||+.||.
T Consensus         8 ~~~vwv~~--~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~~Ry~   85 (995)
T 2ycu_A            8 RRLVWVPS--ELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLRERYY   85 (995)
T ss_dssp             GCEEEEEE--TTTEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGCSSCSHHHHHHHHHHHHH
T ss_pred             CCeEEEEC--CCCceEEEEEEEecCCeEEEEECCCCeEEEeeHHHcccCCCccccccchhhhhccccHHHHHHHHHHHHh
Confidence            56799987  567788875441  11100      0   00    11224455689999999999999999999999999


Q ss_pred             cCcccccccCeEEEecCCCCCCCCC
Q psy4957         118 AGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       118 ~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      .+.||||+|++|||||||+.+|||+
T Consensus        86 ~~~iYTy~G~ilvavNPyk~l~iy~  110 (995)
T 2ycu_A           86 SGLIYTYSGLFCVVINPYKQLPIYT  110 (995)
T ss_dssp             TTCCEEEETTEEEEECCSSCCSCCS
T ss_pred             cCceeeecCceeeeeCCccccCCCC
Confidence            9999999999999999999999997

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=99.59  E-value=7.6e-16  Score=139.35  Aligned_cols=56  Identities=41%  Similarity=0.635  Sum_probs=52.2

Q ss_pred             CCCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCC-CCCC
Q psy4957          87 YQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF-FCED  142 (143)
Q Consensus        87 ~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~l-piY~  142 (143)
                      .+|...+++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+ |||+
T Consensus        48 ~~~~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~IYTy~G~iLiaVNPyk~l~~iY~  104 (784)
T 2v26_A           48 EEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYS  104 (784)
T ss_dssp             CSCSSCCCSBGGGSSSCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCTTTTS
T ss_pred             ccccccccchhhhhhhccHHHHHHHHHHHHhcCceeeeccceEEEecCCcCcCCCCC
Confidence            3445679999999999999999999999999999999999999999999999 5997

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=99.59  E-value=5.8e-16  Score=143.18  Aligned_cols=89  Identities=27%  Similarity=0.377  Sum_probs=68.5

Q ss_pred             ccceEe---eecccCCccccCCcccC--chhh--h-----h-hh----hcccCCCCCCCCCCcCCCCCCChHHHHHHHHH
Q psy4957          52 RDFLFY---LREKLNDNIWADGFNID--PELI--R-----D-YF----YRFLYQPQDREYPDLCQLPDLNETTLLENLRA  114 (143)
Q Consensus        52 ~~~r~~---l~~~~~~~~w~~~~~~~--~~~~--~-----~-~~----~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~  114 (143)
                      .|.++|   +.+  ++..|+.|.+..  +..+  +     . .+    .....+|...+++||+.|++|||++||++|+.
T Consensus        31 ~~~~vW~~~v~~--~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~~  108 (1010)
T 1g8x_A           31 DKRYIWYNPDPD--ERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRV  108 (1010)
T ss_dssp             CCCEEEECSSTT--CTTCCEEEEEEEEETTEEEEECSSSSEEEEETTTCCBCCCGGGTTCSBGGGCSSCCHHHHHHHHHH
T ss_pred             cCCceeCccCcC--cccCeeEEEEEEecCCeEEEEecCCcEEEecHHhccccCcchhcchhhhhhhhcccHHHHHHHHHH
Confidence            367899   776  567788885441  1110  0     0 01    01124445678999999999999999999999


Q ss_pred             HhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957         115 RFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus       115 Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ||..+.||||+|++|||||||+.+|||+
T Consensus       109 Ry~~~~iYTy~G~ilvavNPyk~l~iy~  136 (1010)
T 1g8x_A          109 RYNQDLIYTYSGLFLVAVNPFKRIPIYT  136 (1010)
T ss_dssp             HHTTTCCEEEETTEEEEECCSSCCSCCS
T ss_pred             HHhhCCceeccCceeEEecCCccccCCC
Confidence            9999999999999999999999999997

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=99.48  E-value=1.9e-14  Score=128.87  Aligned_cols=53  Identities=34%  Similarity=0.654  Sum_probs=49.2

Q ss_pred             CCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          90 QDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        90 ~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +..+++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+|||+
T Consensus         6 ~~~~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~   58 (697)
T 1lkx_A            6 KAEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYK   58 (697)
T ss_dssp             ---CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCS
T ss_pred             cccCCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCC
Confidence            34589999999999999999999999999999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	7e-18
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	7e-18
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	9e-18
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	1e-17
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	1e-17
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	5e-16

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 76.7 bits (188), Expect = 7e-18
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+  +  LNE ++L NLR+R+ +G IYTY G   IAVNP++
Sbjct: 39  DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 79

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 76.7 bits (188), Expect = 7e-18
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE ++L NLR R+ +G IYTY G   + +NP+K
Sbjct: 9   DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 49

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 76.3 bits (187), Expect = 9e-18
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+  +  L+E  +L NL+ R+ A  IYTY G   + VNP+K
Sbjct: 41  DMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYK 81

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 76.3 bits (187), Expect = 1e-17
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 95  PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           PD   L  + E   +ENL  R  + +IYTY+G ++I+ NPFK
Sbjct: 3   PDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFK 44

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 75.9 bits (186), Expect = 1e-17
 Identities = 22/41 (53%), Positives = 27/41 (65%)

Query: 96  DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
           D+ +L  LNE  +  NLR R+N   IYTY G  L+AVNPFK
Sbjct: 43  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 83

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 71.3 bits (174), Expect = 5e-16
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 96  DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPFK 136
           DL  L  L+E  +L NL+ RF ++  IYTY G +L+A+NP++
Sbjct: 11  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYE 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	99.56
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	99.55
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	99.55
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	99.54
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	99.47
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	99.44
d1w7ja1	58	Myosin S1 fragment, N-terminal domain {Chicken (Ga	91.73

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.56  E-value=7.9e-16  Score=137.15  Aligned_cols=59  Identities=32%  Similarity=0.540  Sum_probs=54.6

Q ss_pred             ccc-CCCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          84 RFL-YQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        84 ~~~-~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +|. .||..++++||+.|++|||++||++|+.||.++.||||+|++|||||||+.+|+|+
T Consensus        28 ~~~~np~~~d~veDl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~   87 (794)
T d2mysa2          28 PFDMNPPKYDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYN   87 (794)
T ss_dssp             CCCCCCTTSSSCSBGGGCSCCCHHHHHHHHHHTTTTTCCEEECSSCEEEECCSSCCGGGC
T ss_pred             CCCCCCccccCcchhcCCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCC
Confidence            343 45667899999999999999999999999999999999999999999999999997

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.55  E-value=1.2e-15  Score=134.68  Aligned_cols=56  Identities=39%  Similarity=0.559  Sum_probs=52.8

Q ss_pred             CCCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          87 YQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        87 ~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      .||..++++||+.|++|||++||++|+.||.++.||||+|++|||||||+.+|||+
T Consensus        34 nP~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iy~   89 (712)
T d1d0xa2          34 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYT   89 (712)
T ss_dssp             CCGGGTTCSBGGGCSSCCHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCS
T ss_pred             CCccccCCchhhcCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCC
Confidence            34556799999999999999999999999999999999999999999999999997

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.55  E-value=1.7e-15  Score=134.89  Aligned_cols=58  Identities=38%  Similarity=0.663  Sum_probs=54.7

Q ss_pred             ccCCCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          85 FLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        85 ~~~~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ...||..++++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+|||+
T Consensus        28 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iy~   85 (789)
T d1kk8a2          28 FMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYT   85 (789)
T ss_dssp             CCCCGGGTTCSBGGGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTS
T ss_pred             ccCCccccCcchhccCCCCCHHHHHHHHHHHHcCCCceEeECCEEEEECCCCCCCCCC
Confidence            3366778899999999999999999999999999999999999999999999999997

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.54  E-value=1.9e-15  Score=133.22  Aligned_cols=55  Identities=36%  Similarity=0.628  Sum_probs=52.3

Q ss_pred             CCCCCCCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          88 QPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        88 ~~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      ||..+.++||+.|++|||++||++|+.||.++.||||+|++|||||||+.+|+|+
T Consensus         1 p~~l~~veDl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~   55 (710)
T d1br2a2           1 PPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYS   55 (710)
T ss_dssp             CGGGTTCSBTTSCSSCSHHHHHHHHHHHHHTTCCEEECSSSEEEECCSSCCTTCC
T ss_pred             CCccccCchhhcCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCC
Confidence            4566789999999999999999999999999999999999999999999999997

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=99.47  E-value=1.4e-14  Score=127.21  Aligned_cols=50  Identities=36%  Similarity=0.683  Sum_probs=48.7

Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHhhcCcccccccCeEEEecCCCCCCCCC
Q psy4957          93 EYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        93 ~~~Dl~~L~~l~e~~vl~~L~~Rf~~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +++||+.|+++||++||++|+.||.++.||||+|++|||||||+.+|+|+
T Consensus         1 gv~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~   50 (684)
T d1lkxa_           1 GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYK   50 (684)
T ss_dssp             CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCS
T ss_pred             CcccccCCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCC
Confidence            58999999999999999999999999999999999999999999999997

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=99.44  E-value=3.3e-14  Score=125.39  Aligned_cols=54  Identities=35%  Similarity=0.514  Sum_probs=50.0

Q ss_pred             CCCCCCCCcCCCCCCChHHHHHHHHHHhh-cCcccccccCeEEEecCCCCCCCCC
Q psy4957          89 PQDREYPDLCQLPDLNETTLLENLRARFN-AGHIYTYVGSILIAVNPFKLFFCED  142 (143)
Q Consensus        89 ~~~~~~~Dl~~L~~l~e~~vl~~L~~Rf~-~~~IYTy~G~iLvaVNPyk~lpiY~  142 (143)
                      +...+++||+.|++|||++||++|+.||. .+.||||+|++|||||||+.+|+|+
T Consensus         4 ~~l~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~~iYT~~G~iLiaiNP~~~~~~y~   58 (730)
T d1w7ja2           4 DILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYG   58 (730)
T ss_dssp             GGGTTCSSSTTCSCCSHHHHHHHHHHHHHHHCCCEEEETTEEEEECCSSCCSCCS
T ss_pred             ccccCcchhhcCCCCCHHHHHHHHHHHhccCCceeeeECCEEEEECCCCCCCCCC
Confidence            44578999999999999999999999996 5679999999999999999999997

>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=91.73  E-value=0.025  Score=33.77  Aligned_cols=20  Identities=5%  Similarity=0.346  Sum_probs=18.1

Q ss_pred             ccceEeeecccCCccccCCccc
Q psy4957          52 RDFLFYLREKLNDNIWADGFNI   73 (143)
Q Consensus        52 ~~~r~~l~~~~~~~~w~~~~~~   73 (143)
                      .|.|+|+++  ++.+|++|++.
T Consensus         5 kgtRvWiPd--~e~vW~~AEl~   24 (58)
T d1w7ja1           5 KYARVWIPD--PEEVWKSAELL   24 (58)
T ss_dssp             TTCEEEEEE--TTTEEEEEEES
T ss_pred             cCcEEEEEC--ccccEeeeEEE
Confidence            589999999  89999999876