Psyllid ID: psy4965

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccccEEEcccEEEEEEEcHHHcccccEEEEEcccccEEEEEcccccEEccccEEEEccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccccEEEccccEEEEEEEEHHHHHHccEEEEEEccccEEEEEcccccEEccccEEEEcccccccccccccccEEEEEEEEEccccccccHHHHHHHHHHccccccccccccccccccEEEEEEccHHHHHHcccccccccccccccccccccccccccEEEccc
Coil and Loop (DISEMBL)
PDQEPGDVIIVLeqkphdrfqrqginlvTTETITLTEALCGFTKVIKhlddrqllithppgevikpedikgivgegmpiyknpyekgtlyikfdvqfpesyfnnDAKLKELEAllsprpsvdmppphsehveeVELREYIAsergaggggmggeayhsdeddemgghmhegqsvrcanq
Flexible Loop (DISEMBL)
PDQEPGDVIIvleqkphdrfqrqgINLVTTETITLTEALCGFTKVIKHLDDRQLLithppgevikpedikgivgegMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHegqsvrcanq
Low Complexity Region (SEG)
PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMppphsehveeveLREYIASERgaggggmggEAYHSDEDDEMGGHMHEGQSVRCANQ
Disordered region (IsUnstruct)
*******VIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAK************************************************************************
Disordered Region (DISOPRED)
PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKE********************VEEVELRE***********************************VRC***
Disordered Region (DISEMBL)
PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEM***************
Disordered Region (DISPRO)
*DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIASER***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9QYJ0	412	DnaJ homolog subfamily A	yes	N/A	0.960	0.417	0.508	3e-37
Q2HJ94	412	DnaJ homolog subfamily A	yes	N/A	0.960	0.417	0.508	3e-37
O60884	412	DnaJ homolog subfamily A	yes	N/A	0.960	0.417	0.508	4e-37
O35824	412	DnaJ homolog subfamily A	yes	N/A	0.960	0.417	0.502	1e-36
Q8WW22	397	DnaJ homolog subfamily A	no	N/A	0.888	0.400	0.487	1e-33
P43644	417	DnaJ protein homolog ANJ1	N/A	N/A	0.955	0.410	0.461	2e-33
Q9JMC3	397	DnaJ homolog subfamily A	no	N/A	0.888	0.400	0.475	4e-33
Q04960	413	DnaJ protein homolog OS=C	N/A	N/A	0.944	0.409	0.438	2e-32
P42825	419	Chaperone protein dnaJ 2	yes	N/A	0.960	0.410	0.438	6e-32
P42824	418	DnaJ protein homolog 2 OS	N/A	N/A	0.960	0.411	0.433	8e-31

>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1

 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/179 (50%), Positives = 119/179 (66%), Gaps = 7/179 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct: 301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
           V   P      EEVEL+E+  S RG+ GGG   EAY+   D+E     H G  V+CA+Q
Sbjct: 361 V---PNVIGETEEVELQEF-DSTRGS-GGGQRREAYNDSSDEES--SSHHGPGVQCAHQ 412

Co-chaperone of Hsc70.
Mus musculus (taxid: 10090)

>sp|Q2HJ94|DNJA2_BOVIN DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1

 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/179 (50%), Positives = 119/179 (66%), Gaps = 7/179 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct: 301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
           V   P      EEVEL+E+  S RG+ GGG   EAY+   D+E     H G  V+CA+Q
Sbjct: 361 V---PNIIGDTEEVELQEF-DSTRGS-GGGQRREAYNDSSDEES--SSHHGPGVQCAHQ 412

Co-chaperone of Hsc70.

Bos taurus (taxid: 9913)

>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1

 Score =  154 bits (388), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/179 (50%), Positives = 119/179 (66%), Gaps = 7/179 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct: 301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
           V   P      EEVEL+E+  S RG+ GGG   EAY+   D+E     H G  V+CA+Q
Sbjct: 361 V---PNIIGETEEVELQEF-DSTRGS-GGGQRREAYNDSSDEES--SSHHGPGVQCAHQ 412

Co-chaperone of Hsc70.

Homo sapiens (taxid: 9606)

>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/179 (50%), Positives = 118/179 (65%), Gaps = 7/179 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  EPGD+++ +++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct: 301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
           V   P      EEVEL+E+  S RG+ GGG   EAY+   D+E     H G  V+CA+Q
Sbjct: 361 V---PNVIGETEEVELQEF-DSTRGS-GGGQRREAYNDSSDEES--SSHHGPGVQCAHQ 412

Rattus norvegicus (taxid: 10116)

>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 107/166 (64%), Gaps = 7/166 (4%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P+ EPGDVIIVL+QK H  FQR+G +L+    I L+EALCGF K IK LD+R L+IT   
Sbjct: 233 PELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKA 292

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEVIK  D++ +  EGMPIYK P EKG L I+F V FPE ++ +  KL +LEALL PR  
Sbjct: 293 GEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQK 352

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGG 166
           V +    ++ +++VEL+E+  +E+         EAY  DED    G
Sbjct: 353 VRI----TDDMDQVELKEFCPNEQNW---RQHREAYEEDEDGPQAG 391

Homo sapiens (taxid: 9606)

>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 108/180 (60%), Gaps = 9/180 (5%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD   GD++ VL+QK H +F+R+G +L    T++LTEALCGF  V+ HLD RQLLI    
Sbjct: 246 PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFRFVLTHLDGRQLLIKSNL 305

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEV+KP+  K I  EGMPIY+ P+ KG +YI F V+FP+S   N  ++K LEA+L P+PS
Sbjct: 306 GEVVKPDQFKAIEDEGMPIYQRPFMKGKMYIHFTVEFPDSL--NPDQVKSLEAILPPKPS 363

Query: 121 VDMPPPHSEHVEEVELREY-IASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
           + +     +  EE  L    I  E          EAY  DEDDE  G    GQ V+CA Q
Sbjct: 364 MSLTYMELDECEETTLHNVNIEEEMKRKQTQAQQEAY--DEDDEPAG----GQRVQCAQQ 417

Have a continuous role in plant development probably in the structural organization of compartments.

Atriplex nummularia (taxid: 3553)

>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1

 Score =  140 bits (353), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 107/166 (64%), Gaps = 7/166 (4%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P+ +PGDVIIVL+QK H  FQR+G +L+    I L+EALCGF K IK LDDR L+I+   
Sbjct: 233 PELDPGDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKS 292

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEVIK  D+K I  EGMPIYK P EKG + I+F V FPE  + +  KL +LEALL PR  
Sbjct: 293 GEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPPRQK 352

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGG 166
           V +    ++ +++VEL+E+  +E+         EAY  D+++   G
Sbjct: 353 VRI----TDDMDQVELKEFNPNEQSW---RQHREAYEEDDEEPRAG 391

Mus musculus (taxid: 10090)

>sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 11/180 (6%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD   GD++ VL+QK H +F+R+G +L    T++L E+LCGF  ++ HLD RQLLI   P
Sbjct: 244 PDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLVESLCGFQFILTHLDGRQLLIKSLP 303

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEV+KP+  K I  EGMP+Y+ P+ KG LYI F V+FP+S   N  + K LE +L PR S
Sbjct: 304 GEVVKPDQFKAINDEGMPMYQRPFMKGKLYIHFSVEFPDSL--NPEQCKALEGVLPPRTS 361

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEG-QSVRCANQ 179
           V +     +  EE  L +    E          EAY  DED      MH G Q V+CA Q
Sbjct: 362 VQLSDMELDECEETTLHDVNIEEEMR--RKQAQEAYDEDED------MHGGAQRVQCAQQ 413

Have a continuous role in plant development probably in the structural organization of compartments.

Cucumis sativus (taxid: 3659)

>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2

 Score =  136 bits (343), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD   GD++ V++QK H +F+R+G +L    TI+LTEALCGF  V+ HLD RQLLI   P
Sbjct: 247 PDTVTGDIVFVIQQKEHPKFKRKGEDLFVEHTISLTEALCGFQFVLTHLDKRQLLIKSKP 306

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEV+KP+  K I  EGMPIY+ P+ KG LYI F V+FPES   +  + K +EA+L P+P+
Sbjct: 307 GEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPESLSPD--QTKAIEAVL-PKPT 363

Query: 121 -VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
              +     +  EE  L +    +          EAY  DE+D  GG     Q V+CA Q
Sbjct: 364 KAAISDMEIDDCEETTLHDVNIEDEMKRKAQAQREAYDDDEEDHPGG----AQRVQCAQQ 419

Have a continuous role in plant development probably in the structural organization of compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1

 Score =  133 bits (334), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD   GD++ VL+QK H +F+R+G +L    +++LTEALCGF  V+ HLD+RQLLI   P
Sbjct: 246 PDTVTGDIVFVLQQKEHPKFKRKGDDLFYEHSLSLTEALCGFQFVLTHLDNRQLLIKSNP 305

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEVIKP+  KGI  EGMP+Y+ P+ +G LYI F V FP+S   +  + K LE++L  R +
Sbjct: 306 GEVIKPDQFKGINDEGMPMYQRPFMRGKLYIHFSVDFPDSLTPD--QCKALESVLPSRNA 363

Query: 121 VDMPPPHSEHVEEVELREY-IASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             +     +  EE  + +  I  E          EAY  DEDDE  G     Q V+CA Q
Sbjct: 364 SRLTDMEIDECEETTMHDVNIEEEMRRKQHQQAQEAY--DEDDEGHGG---AQRVQCAQQ 418

Have a continuous role in plant development probably in the structural organization of compartments.

Allium porrum (taxid: 4681)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
357617273	404	DnaJ-like protein 1 [Danaus plexippus]	0.944	0.418	0.564	6e-48
255652879	408	DnaJ (Hsp40) homolog 1 [Bombyx mori] gi|	0.949	0.416	0.564	1e-47
183979264	404	similar to DnaJ protein [Papilio xuthus]	0.944	0.418	0.553	2e-47
389611077	404	DnaJ-like-2 protein [Papilio polytes]	0.944	0.418	0.547	8e-47
91081923	406	PREDICTED: similar to DnaJ (Hsp40) homol	0.949	0.418	0.538	2e-46
241622326	412	molecular chaperone, putative [Ixodes sc	0.966	0.419	0.536	2e-45
260819088	412	hypothetical protein BRAFLDRAFT_217157 [	0.949	0.412	0.575	2e-44
321475384	409	hypothetical protein DAPPUDRAFT_187536 [	0.960	0.420	0.541	1e-43
427789721	408	Putative molecular chaperone dnaj superf	0.932	0.409	0.544	4e-43
296531420	413	dnaJ homolog subfamily A member 2-like [	0.944	0.409	0.502	5e-40

>gi|357617273|gb|EHJ70691.1| DnaJ-like protein 1 [Danaus plexippus]

 Score =  195 bits (496), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 130/179 (72%), Gaps = 10/179 (5%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD +PGDVIIVL+QKPHD F+R G +L+    ITLTEALCGF  V+KHLD R LL+ H P
Sbjct: 236 PDTQPGDVIIVLQQKPHDVFKRTGDDLLMVREITLTEALCGFEFVVKHLDGRDLLVRHLP 295

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEVIKP D+KGI GEGMP +KNP+EKG LYIKFDV FP+++F N+ +LK++E++L PRP+
Sbjct: 296 GEVIKPGDLKGIQGEGMPQHKNPFEKGNLYIKFDVTFPDNHFANEEQLKKIESILPPRPA 355

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             MP    + VEEV + EY ASE+         EAY SD+++    H+H G  V+CA+Q
Sbjct: 356 FVMPT--GDDVEEVNMMEYTASEKSRS----REEAYASDDEE----HVHAGPGVQCAHQ 404

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255652879|ref|NP_001157380.1| DnaJ (Hsp40) homolog 1 [Bombyx mori] gi|253721943|gb|ACT34035.1| DnaJ-1 [Bombyx mori] gi|378465681|gb|AFC01215.1| DnaJ-1 [Bombyx mori]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 125/179 (69%), Gaps = 9/179 (5%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD EPGDVIIVL+QKPH++F+R G NL+    ITLTEALCGF  V KHLD R LLI H P
Sbjct: 239 PDTEPGDVIIVLQQKPHEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLP 298

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEVIKP D+K + GEGMPIYKN +EKG  Y+KFDV FPE++F N+ +LK++E +L PRP+
Sbjct: 299 GEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKFDVVFPENHFANEEQLKQIETILPPRPA 358

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             MP    E VEEV L +Y      + G     EAY SD+++    HMH G  V+CA+Q
Sbjct: 359 FVMPT--GEDVEEVNLMDYFTPSESSRG---REEAYASDDEE----HMHAGPGVQCAHQ 408

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183979264|dbj|BAG30793.1| similar to DnaJ protein [Papilio xuthus]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 129/179 (72%), Gaps = 10/179 (5%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD +PGDVII+L+QKPHD FQR G +L+    ITLTEALCGF  V++HLD R+LL+ HPP
Sbjct: 236 PDIQPGDVIIILQQKPHDVFQRTGDDLIMKHDITLTEALCGFQFVVQHLDGRELLVRHPP 295

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G VIKP D+KGI GEGMP YKNP+EKG LY+KF++ FPE+ F  + +L+++E++L PRP+
Sbjct: 296 GVVIKPGDLKGIQGEGMPQYKNPFEKGNLYVKFNIVFPENNFGTEEQLQKIESILPPRPA 355

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             MP    E VEEV + EY ASER  G      EAY SD+++     MH G  ++CA+Q
Sbjct: 356 FVMPT--GEDVEEVNMMEYTASERSRG----REEAYASDDEET----MHGGPGMQCAHQ 404

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611077|dbj|BAM19149.1| DnaJ-like-2 protein [Papilio polytes]

 Score =  191 bits (486), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 128/179 (71%), Gaps = 10/179 (5%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P+ +PGDVII+L+QKPHD FQR G +L+    ITLTEALCGF  V++HLD R+LL+ HPP
Sbjct: 236 PNVQPGDVIIILQQKPHDVFQRTGDDLIMKHDITLTEALCGFQFVVQHLDGRELLVRHPP 295

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G VIKP D+KGI GEGMP YKNP+EKG LY+KF++ FPE+ F  + +L ++E++L PRP+
Sbjct: 296 GVVIKPGDLKGIQGEGMPQYKNPFEKGNLYVKFNIVFPENNFGTEEQLNKIESILPPRPA 355

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             MP    E VEEV + EY ASER  G      EAY SD+++     MH G  ++CA+Q
Sbjct: 356 FVMPT--GEDVEEVNMMEYTASERSRG----REEAYASDDEET----MHGGPGMQCAHQ 404

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081923|ref|XP_970724.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily A, member 2 [Tribolium castaneum] gi|270007352|gb|EFA03800.1| hypothetical protein TcasGA2_TC013913 [Tribolium castaneum]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 131/180 (72%), Gaps = 10/180 (5%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD EPGDVII+L +K H+ FQR G +L+   TI+LTEALCGF+ V++ LD R LLI HPP
Sbjct: 236 PDIEPGDVIIILNEKSHETFQRSGDDLLMNRTISLTEALCGFSFVLRQLDGRDLLIKHPP 295

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G+++KP D+K ++GEGMP+YKNP+EKG LYI F++ FPES F ++  LK LE++L PRP 
Sbjct: 296 GDIVKPGDLKAVMGEGMPMYKNPFEKGNLYITFEITFPESNFADEKTLKSLESMLPPRPV 355

Query: 121 VDMPPPHSEHVEEVELREY-IASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             M  P  E+VEEV+L  +  A+++GA G    GEAY SD++D    HMH G  ++CA+Q
Sbjct: 356 FQM--PEGENVEEVDLHHFDSANDKGAHGS--RGEAYASDDED----HMH-GPGIQCAHQ 406

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241622326|ref|XP_002408934.1| molecular chaperone, putative [Ixodes scapularis] gi|215503078|gb|EEC12572.1| molecular chaperone, putative [Ixodes scapularis]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 124/179 (69%), Gaps = 6/179 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  E GDV+I+L+ KPH+ F R+G NL  + ++TLTEALCGF  V+KHLD R ++I HPP
Sbjct: 240 PGVETGDVVIILQTKPHELFHREGSNLFMSHSVTLTEALCGFEMVLKHLDGRDIVIKHPP 299

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G VIKP  +KGI GEGMP+Y++P+EKG LYIKFDV FP+++F ++  LKE+EAL+  RPS
Sbjct: 300 GSVIKPRSMKGIRGEGMPVYRDPFEKGNLYIKFDVVFPDNHFADEVALKEVEALIGDRPS 359

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             +  P  EHVE+V+L EY  S  G  GG    EAYH D +D    H   G  V CA+Q
Sbjct: 360 -PVHVPTGEHVEDVDLHEYDPSMSGERGG--RSEAYHEDAEDH---HHRAGPGVECAHQ 412

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260819088|ref|XP_002604869.1| hypothetical protein BRAFLDRAFT_217157 [Branchiostoma floridae] gi|229290198|gb|EEN60879.1| hypothetical protein BRAFLDRAFT_217157 [Branchiostoma floridae]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 128/179 (71%), Gaps = 9/179 (5%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  E GD+I+VL++K HDRF+R G +L  T T+ LTEALCGFT  +KHLD R L I +PP
Sbjct: 243 PGVEAGDIILVLQEKDHDRFRRDGPDLFLTHTVGLTEALCGFTLNVKHLDGRNLAIKYPP 302

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G VI+P  I+G+VGEGMPIY+NP+EKG LYIKFD++FPE+ F ++AK+K LE LL PRP+
Sbjct: 303 GSVIEPGCIRGVVGEGMPIYRNPFEKGNLYIKFDIKFPENNFVDEAKMKTLEGLLPPRPT 362

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             MP P  E VEEV+L EY  S RGA G     EAY S  DDE G     G +V+CA+Q
Sbjct: 363 --MPHPAGE-VEEVDLMEY-ESTRGAPGAN-SREAYDS-SDDEDG---PRGANVQCAHQ 412

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321475384|gb|EFX86347.1| hypothetical protein DAPPUDRAFT_187536 [Daphnia pulex]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 125/179 (69%), Gaps = 7/179 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  E GDV+I+L+QKPH++F+RQG +L    TITLTEALCGF  V+KHLD R L+I   P
Sbjct: 238 PGVEAGDVVIILQQKPHEKFKRQGDDLCVMHTITLTEALCGFCYVLKHLDGRDLVIRQAP 297

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G V++P   K + GEGMP Y++P+EKG L+IKFDV+FP S+F +++ +  +E LL  RPS
Sbjct: 298 GNVVEPGSTKMVPGEGMPRYRSPFEKGELFIKFDVEFPSSHFADESTIMAIEKLLPGRPS 357

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
           V   PP  EHVEEV+L +Y A+ER  GGGG    AY  D DDE GG    G  V+CA+Q
Sbjct: 358 V--IPPSGEHVEEVDLHDYDANERRDGGGGP-SNAY--DSDDEEGG--PSGPGVQCAHQ 409

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789721|gb|JAA60312.1| Putative molecular chaperone dnaj superfamily [Rhipicephalus pulchellus]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 118/180 (65%), Gaps = 13/180 (7%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  EPGD++IVL+ KPH+ F R G NL  T T++LTEALCGF  V+KHLD R L+I   P
Sbjct: 241 PGVEPGDIVIVLQTKPHEVFHRDGCNLYMTHTVSLTEALCGFEMVLKHLDGRDLVIREVP 300

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G VIKP  IKGI GEGMPIY+NP EKG LYIKFDV+FPE++F  +  LKELEALL  RPS
Sbjct: 301 GMVIKPRSIKGIRGEGMPIYRNPLEKGNLYIKFDVEFPENHFAGEEALKELEALLGDRPS 360

Query: 121 VDMP-PPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             +   P  +HVEEV+L +Y  + +         EAYH DE    G       SV CA+Q
Sbjct: 361 AGLDGVPVGDHVEEVDLHDYDPNSQ-----NQRQEAYHEDEQQPRG-------SVECAHQ 408

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296531420|ref|NP_001171852.1| dnaJ homolog subfamily A member 2-like [Saccoglossus kowalevskii]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/179 (50%), Positives = 120/179 (67%), Gaps = 10/179 (5%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P  EPGDVIIVL+Q+ HD FQR G++L  + +I L EALCGF   + HLD R+LL+   P
Sbjct: 245 PGLEPGDVIIVLQQREHDVFQRDGLDLYMSYSIGLAEALCGFQISVTHLDGRRLLVKSAP 304

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G VI P  ++ IVGEG P+YK+P+EKG LYIKF++++PE+ F ++ KLK +E  L PRP 
Sbjct: 305 GGVINPGSMRAIVGEGFPVYKSPFEKGNLYIKFEIKWPENNFADENKLKMIEKFLPPRPK 364

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
           +   PP  ++VEEV+L EY   ER     G   EAYH D+D + G   H G  V+CA+Q
Sbjct: 365 M---PPLDDNVEEVDLTEY--EERLNKRSGR--EAYHEDDDADEG---HHGPGVQCAHQ 413

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
UNIPROTKB|Q2HJ94	412	DNAJA2 "DnaJ homolog subfamily	0.960	0.417	0.452	2.4e-35
UNIPROTKB|E2R7F3	413	DNAJA2 "Uncharacterized protei	0.960	0.416	0.452	2.4e-35
UNIPROTKB|H9GWA4	391	LOC100684696 "Uncharacterized	0.960	0.439	0.452	2.4e-35
UNIPROTKB|O60884	412	DNAJA2 "DnaJ homolog subfamily	0.960	0.417	0.452	2.4e-35
UNIPROTKB|F1RP05	412	LOC100521133 "Uncharacterized	0.960	0.417	0.452	2.4e-35
MGI|MGI:1931882	412	Dnaja2 "DnaJ (Hsp40) homolog,	0.960	0.417	0.452	3.1e-35
UNIPROTKB|Q5M9H7	412	Dnaja2 "DnaJ homolog subfamily	0.960	0.417	0.452	3.1e-35
UNIPROTKB|J9NYF6	389	DNAJA2 "Uncharacterized protei	0.955	0.439	0.449	8.3e-35
RGD|71001	412	Dnaja2 "DnaJ (Hsp40) homolog,	0.960	0.417	0.446	1.1e-34
ZFIN|ZDB-GENE-040426-2884	412	dnaja2 "DnaJ (Hsp40) homolog,	0.955	0.415	0.435	1.7e-34

UNIPROTKB|Q2HJ94 DNAJA2 "DnaJ homolog subfamily A member 2" [Bos taurus (taxid:9913)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 81/179 (45%), Positives = 110/179 (61%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+Q
Sbjct:   361 VP---NIIGDTEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAHQ 412

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R7F3 DNAJA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 81/179 (45%), Positives = 110/179 (61%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   242 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 301

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   302 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 361

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+Q
Sbjct:   362 VP---NIIGDTEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAHQ 413

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H9GWA4 LOC100684696 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 81/179 (45%), Positives = 110/179 (61%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   220 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 279

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   280 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 339

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+Q
Sbjct:   340 VP---NIIGDTEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAHQ 391

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|O60884 DNAJA2 "DnaJ homolog subfamily A member 2" [Homo sapiens (taxid:9606)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 81/179 (45%), Positives = 110/179 (61%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+Q
Sbjct:   361 VP---NIIGETEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAHQ 412

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

UNIPROTKB|F1RP05 LOC100521133 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 81/179 (45%), Positives = 110/179 (61%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+Q
Sbjct:   361 VP---NIIGDTEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAHQ 412

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1931882 Dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Mus musculus (taxid:10090)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 81/179 (45%), Positives = 110/179 (61%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+Q
Sbjct:   361 VP---NVIGETEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAHQ 412

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q5M9H7 Dnaja2 "DnaJ homolog subfamily A member 2" [Rattus norvegicus (taxid:10116)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 81/179 (45%), Positives = 110/179 (61%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+Q
Sbjct:   361 VP---NVIGETEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAHQ 412

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|J9NYF6 DNAJA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 80/178 (44%), Positives = 109/178 (61%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   219 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 278

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   279 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 338

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCAN 178
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+
Sbjct:   339 VP---NIIGDTEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAH 389

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

RGD|71001 Dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 80/179 (44%), Positives = 109/179 (60%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD+++ +++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL ELE LL  RP 
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPE 360

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
             V              L+E+ ++           EAY+   D+E   H H G  V+CA+Q
Sbjct:   361 VP---NVIGETEEVELQEFDSTR--GSGGGQRREAYNDSSDEESSSH-H-GPGVQCAHQ 412

GO:0001948 "glycoprotein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0018885 "carbon tetrachloride metabolic process" evidence=IEP

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2884 dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Danio rerio (taxid:7955)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 78/179 (43%), Positives = 113/179 (63%)

Query:     1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
             P  EPGD+++VL++K H+ ++R+G +L  T  I L EALCGF   +KHLD RQ+++ +P 
Sbjct:   242 PGVEPGDIVLVLQEKEHETYRREGNDLHMTHKIGLVEALCGFHFTLKHLDGRQIVVKYPA 301

Query:    61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
             G++I+P  ++ + GEGMP Y+NP+EKG L+IKFDVQFP++ + +  KLKELE LL  R  
Sbjct:   302 GKIIEPGSVRVVRGEGMPQYRNPFEKGDLFIKFDVQFPDNNWLSPEKLKELEDLLPTRAD 361

Query:   121 VDMXXXXXXXXXXXXLREYIASERXXXXXXXXXEAYHSDEDDEMGGHMHEGQSVRCANQ 179
               +            L+E+  S+          EAY+ D  DE GGH H G  V+CA+Q
Sbjct:   362 APVISGDVEEVD---LQEFDMSQ--SSSGGHRREAYN-DSSDEEGGH-H-GPGVQCAHQ 412

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O60884	DNJA2_HUMAN	No assigned EC number	0.5083	0.9608	0.4174	yes	N/A
O35824	DNJA2_RAT	No assigned EC number	0.5027	0.9608	0.4174	yes	N/A
Q2HJ94	DNJA2_BOVIN	No assigned EC number	0.5083	0.9608	0.4174	yes	N/A
Q9QYJ0	DNJA2_MOUSE	No assigned EC number	0.5083	0.9608	0.4174	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	179
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-43
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	2e-30
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	4e-23
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-18
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-12
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	7e-09
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-06
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-06
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	8e-06
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-05
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-05
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-05
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	4e-05
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	9e-05
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	9e-05
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	0.001
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	0.002
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	0.002

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  149 bits (378), Expect = 1e-43
 Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 7/179 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P++ PG+V+ +L +KPHD F+R+G +L  T+ I+L EAL GF   I HLD R+LL+  PP
Sbjct: 250 PNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPP 309

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           GEV+KP DIK I  EGMP YK+P++KG LY+ F+V FP      + + + L++L    P 
Sbjct: 310 GEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPE 369

Query: 121 VDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDEDDEMGGHMHEGQSVRCANQ 179
                  +E +E V  +     E          + Y  DEDD    H  EG+ V C  Q
Sbjct: 370 EKKDLEDTE-IEVVTAQNVDPEEVKD---RDQKQQYQEDEDD---EHHQEGERVACRQQ 421

Length = 421

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  107 bits (271), Expect = 2e-30
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
               PGD+ +V+  KPH  F+R G +L     I+LTEAL G    +      ++ +  PP
Sbjct: 62  NGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPT-LGGKVKLKIPP 120

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100
           G   +P  +  + G+GMP       +G LY++  V+FP+ 
Sbjct: 121 GT--QPGTVLRLKGKGMPRL-RGGGRGDLYVEVKVEFPKK 157

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 87.2 bits (217), Expect = 4e-23
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 26  NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYE 85
           +L  T  I+L EAL G T  +  LD R++ I  P G   +P D   I G+GMPI K    
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAG--TQPGDKLRIKGKGMPINKGGNG 58

Query: 86  KGTLYIKFDVQFPESYFNNDAKL 108
           +G L +  +V+ P+   +   +L
Sbjct: 59  RGDLIVTLNVKIPKKLSSEQKEL 81

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
                GD+ + +  KPH  F+R G +L     I+ TEA  G    +  LD R + +  P 
Sbjct: 240 NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPA 298

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS 120
           G   +  ++  + G+GMP  ++   +G LY++  V+ P++   +D + + LE        
Sbjct: 299 GT--QTGEVFRLRGKGMPKLRSGG-RGDLYVRVKVETPKNL--SDEQKELLEEFAKSLGE 353

Query: 121 VDMPPPH 127
                P 
Sbjct: 354 GPEQSPG 360

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 4   EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD-DRQLLITHPPGE 62
             GD+ +V+  KPH  F+R G +L     I+ T+A+ G    +  LD D +L I  P G 
Sbjct: 246 PNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKI--PAG- 302

Query: 63  VIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR 118
             +   +  + G+G+P       +G L +   V+ P++   +  + + LE L    
Sbjct: 303 -TQSGTVFRLKGKGVP-RLRGNGRGDLLVTVKVETPKNL--SKEQKELLEELAEAS 354

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 13/125 (10%)

Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
           PGD+ I+++ KPH  F+R+G NL     IT+ EA+ G    +  LD ++  +  PPG   
Sbjct: 255 PGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--T 312

Query: 65  KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE----SYFNNDAK-----LKELEALL 115
           K  D   + G+GMP  K     G L ++  +  P+    S    D K     LKEL+ LL
Sbjct: 313 KEGDKIRVPGKGMPRLKGS-GYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371

Query: 116 SPRPS 120
            P P 
Sbjct: 372 -PEPE 375

Length = 382

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 13/131 (9%)

Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKV-IKHLDDRQLLITHPPGEV 63
           PGD+I+V+E+KPH+ F R G +++    ++  + + G TKV +  LD    L T P G  
Sbjct: 266 PGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLG-TKVEVPTLDGAVKL-TIPAG-- 321

Query: 64  IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAK-LKELEALLSPRPSVD 122
            +PE +  I G+G+   +    +G  Y++ +V  P+   + D + LKEL      + S  
Sbjct: 322 TQPETMLRIPGKGIGHLRGS-GRGDQYVRVNVFVPKEVSHQDKELLKEL------KKSSH 374

Query: 123 MPPPHSEHVEE 133
           + P      EE
Sbjct: 375 ISPNAHNDKEE 385

Length = 397

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)

Query: 1   PD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 59
           PD Q+ GD+ I +  KPH  F+R G +L  T  I+ T+A  G    I+ +  +++ I  P
Sbjct: 241 PDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIP 300

Query: 60  PGEVIKPEDIKGIVGEGMPIYKNPYEK-GTLYIKFDVQFPESYFNNDAKLKE 110
            G   + ++   I  EGMPI     EK G L +   ++ P++  +N  KL E
Sbjct: 301 KG--TENDEQIIIKNEGMPILHT--EKFGNLILIIKIKTPKNLNSNAIKLLE 348

Length = 365

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 6   GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 65
           GD+ +++  +P  RF+R G +L+   TI   +A+ G T  +   +    ++  PPG   +
Sbjct: 257 GDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQ 314

Query: 66  PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAK-LKEL 111
           PE +  + G+G+P  +    +G L +   V+ P+     + K LKEL
Sbjct: 315 PETVFRLKGKGLPNMRYG-RRGDLIVNVHVEIPKRLSREERKLLKEL 360

Length = 369

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
            GD+ + + ++PHD F R G +L  T ++ + +A  G T  ++ + D    IT PPG   
Sbjct: 243 AGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--T 300

Query: 65  KPEDIKGIVGEGMP 78
           +P  +  + G GMP
Sbjct: 301 QPGSVITLRGRGMP 314

Length = 378

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
           PGD+ + L  K    F+R GIN+++   I+  +A+ G T  +  +D    L T P G   
Sbjct: 247 PGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVEL-TIPAG--T 303

Query: 65  KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 98
           +P  +  +  +G+P   NP  +G   I   V+ P
Sbjct: 304 QPNTVLTLENKGVPRLGNPVARGDHLITVKVKIP 337

Length = 374

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
               PGD+ + L  +PH+ F+R G ++     I+  +A  G    +  L+  + L   P 
Sbjct: 240 RGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGEREL-KIPK 298

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 98
           G   +P DI    G+G+P  +    +G   I+ +V+ P
Sbjct: 299 G--TQPGDIFRFKGKGIPSLRG-GGRGDQIIEVEVKVP 333

Length = 366

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 11/119 (9%)

Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDR-QLLITH--PPG 61
           PGD+ +V+  +    FQRQG +LV T+ I+  +A  G    +  LDD   L I      G
Sbjct: 244 PGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSG 303

Query: 62  EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAK-LKELEALLSPRP 119
           EV +      + G+G+P Y    +KG L ++  V  P        + L+E EAL   +P
Sbjct: 304 EVFR------LRGKGLP-YLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFEALEEEKP 355

Length = 373

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 4   EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEV 63
           EPGD+ +V++ KPH  F+R+G NL   + I+  +A  G T  +  + D  + +  P G  
Sbjct: 249 EPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTI-DGPVELKIPAG-- 305

Query: 64  IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKEL 111
            +      + G GMP  +    KG LY+K  V  P+       K KEL
Sbjct: 306 TQSGTTFRLKGHGMPSLRWS-GKGNLYVKVKVVVPKKL---SPKQKEL 349

Length = 378

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 6   GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 65
           GD+ +V   K H+ F+RQG +L+    I+L +A+ G    +  +D ++  +  P G   +
Sbjct: 251 GDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TE 308

Query: 66  PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKE 110
              +  + G GMP Y   Y KG  ++   ++ P+       +L E
Sbjct: 309 SGQVFRLKGHGMP-YLGAYGKGDQHVIVKIEIPKKITRRQRELIE 352

Length = 372

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 6   GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK 65
           GD+ IV++ KPH  F+R+G N+     IT T+A  G    I  LD + +  T P G   +
Sbjct: 260 GDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQ 316

Query: 66  PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
                 + G+G+P +     +G   +K  ++ P+
Sbjct: 317 TGTKFRLRGKGIP-HLRGRGRGDQIVKVYIEVPK 349

Length = 386

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP---PG 61
            GD+++V+E++PH    R   +L+    +++  A  G    +  +D +  +       PG
Sbjct: 258 NGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPG 317

Query: 62  EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 100
           +V++      +  +G+P   N Y  G L +   V  PE+
Sbjct: 318 KVLR------LRNKGLPSV-NGYGTGDLLVNVSVYIPET 349

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHL-DDRQLLITHPPGEV 63
            GD+ + ++ +PH  F+R+G +L+    I   +A  G  K I  L  +    +T P G  
Sbjct: 258 AGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG-- 315

Query: 64  IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
           I+   I  + G+G P       +G L ++  V+ P+
Sbjct: 316 IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQ 350

Length = 391

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 41
           P    GD+ IVL  K HD F+R G ++++   I+ T+A  G
Sbjct: 241 PGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALG 281

Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	99.96
PRK14288	369	chaperone protein DnaJ; Provisional	99.96
PRK14278	378	chaperone protein DnaJ; Provisional	99.95
PRK14286	372	chaperone protein DnaJ; Provisional	99.95
PRK14277	386	chaperone protein DnaJ; Provisional	99.95
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.95
PRK14281	397	chaperone protein DnaJ; Provisional	99.95
PRK14280	376	chaperone protein DnaJ; Provisional	99.95
PRK14295	389	chaperone protein DnaJ; Provisional	99.95
PRK14298	377	chaperone protein DnaJ; Provisional	99.95
PRK14287	371	chaperone protein DnaJ; Provisional	99.95
PRK14276	380	chaperone protein DnaJ; Provisional	99.95
PRK14297	380	chaperone protein DnaJ; Provisional	99.95
PRK14300	372	chaperone protein DnaJ; Provisional	99.95
PRK14284	391	chaperone protein DnaJ; Provisional	99.95
PRK14279	392	chaperone protein DnaJ; Provisional	99.95
PRK14285	365	chaperone protein DnaJ; Provisional	99.94
PRK14301	373	chaperone protein DnaJ; Provisional	99.94
PRK14291	382	chaperone protein DnaJ; Provisional	99.94
PRK10767	371	chaperone protein DnaJ; Provisional	99.94
PRK14282	369	chaperone protein DnaJ; Provisional	99.94
PRK14294	366	chaperone protein DnaJ; Provisional	99.94
PRK14299	291	chaperone protein DnaJ; Provisional	99.94
KOG0712|consensus	337		99.94
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.94
PRK14290	365	chaperone protein DnaJ; Provisional	99.94
PRK14283	378	chaperone protein DnaJ; Provisional	99.94
PRK14293	374	chaperone protein DnaJ; Provisional	99.94
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.93
PRK14289	386	chaperone protein DnaJ; Provisional	99.92
PRK14292	371	chaperone protein DnaJ; Provisional	99.92
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.9
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.89
PRK14299	291	chaperone protein DnaJ; Provisional	99.2
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.09
PRK14289	386	chaperone protein DnaJ; Provisional	98.94
KOG0713|consensus	336		98.85
PRK14293	374	chaperone protein DnaJ; Provisional	98.81
PRK14301	373	chaperone protein DnaJ; Provisional	98.81
PRK14286	372	chaperone protein DnaJ; Provisional	98.77
PRK14287	371	chaperone protein DnaJ; Provisional	98.74
PRK14285	365	chaperone protein DnaJ; Provisional	98.73
PRK14283	378	chaperone protein DnaJ; Provisional	98.72
PRK14295	389	chaperone protein DnaJ; Provisional	98.71
PRK14280	376	chaperone protein DnaJ; Provisional	98.7
PRK14277	386	chaperone protein DnaJ; Provisional	98.7
PRK14298	377	chaperone protein DnaJ; Provisional	98.7
PRK14292	371	chaperone protein DnaJ; Provisional	98.69
PRK14276	380	chaperone protein DnaJ; Provisional	98.69
PRK14296	372	chaperone protein DnaJ; Provisional	98.68
PRK14279	392	chaperone protein DnaJ; Provisional	98.67
PRK14297	380	chaperone protein DnaJ; Provisional	98.67
PRK10767	371	chaperone protein DnaJ; Provisional	98.65
PRK14281	397	chaperone protein DnaJ; Provisional	98.65
PRK14282	369	chaperone protein DnaJ; Provisional	98.65
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.65
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.63
PRK14294	366	chaperone protein DnaJ; Provisional	98.63
PRK14284	391	chaperone protein DnaJ; Provisional	98.53
PRK14278	378	chaperone protein DnaJ; Provisional	98.52
PRK14288	369	chaperone protein DnaJ; Provisional	98.51
PRK14291	382	chaperone protein DnaJ; Provisional	98.5
PRK14300	372	chaperone protein DnaJ; Provisional	98.49
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.3
PRK14290	365	chaperone protein DnaJ; Provisional	98.29
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	98.19
KOG0714|consensus	306		97.87

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=1.8e-43  Score=314.31  Aligned_cols=172  Identities=41%  Similarity=0.715  Sum_probs=147.3

Q ss_pred             CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      |+..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+.|.|++|+|+|++||++++|+|+|||..
T Consensus       250 ~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~  329 (421)
T PTZ00037        250 PNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTY  329 (421)
T ss_pred             CCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeecCcccccCCCCCCCCCCCCCCC
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIASERGAGGGGMGGEAYHSDE  160 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd  160 (179)
                      ++++.+|||||+|+|.||+..+||++++++|++||+.+++.++ .....++|++++++|++++...+   .+++||++|+
T Consensus       330 ~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~  405 (421)
T PTZ00037        330 KSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDE  405 (421)
T ss_pred             CCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhcccc
Confidence            7555789999999999994333999999999999997655322 22346899999999999743222   3478888877


Q ss_pred             cccccCCCCCCCCCcccCC
Q psy4965         161 DDEMGGHMHEGQSVRCANQ  179 (179)
Q Consensus       161 ~~~~~~~~~~~~~vqC~~q  179 (179)
                      |+++.   +++++||||||
T Consensus       406 ~~~~~---~~~~~v~c~~q  421 (421)
T PTZ00037        406 DDEHH---QEGERVACRQQ  421 (421)
T ss_pred             ccccC---CCCCccccCCC
Confidence            76531   46689999998

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=2.2e-29  Score=221.18  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=104.1

Q ss_pred             CCCCccEEEEEEEecCCCCeee-CCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQ-GINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~-g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      +..+|||+|+|++++|+.|+|+ |+||++++.|||.+||+|+++.|+||||+ +.|++|++  +++|++++|+|+|||..
T Consensus       250 ~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~~g~~~ri~GkGmP~~  326 (372)
T PRK14296        250 NGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--INSNELIIINNKGLYKS  326 (372)
T ss_pred             CCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cCCCcEEEEcCCCCCcC
Confidence            5679999999999999999996 89999999999999999999999999999 99999998  99999999999999966


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      .+++.+|||||+|+|.||+.  |+++|+++|++++..
T Consensus       327 ~~~~~~GDL~V~~~V~~P~~--Ls~~q~~~l~~l~~~  361 (372)
T PRK14296        327 INKDKRGDLIIKVNIVVPKN--LSKKEKELIEQIYEQ  361 (372)
T ss_pred             CCCCCcCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            54457899999999999999  999999999999864

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=3.4e-29  Score=219.72  Aligned_cols=112  Identities=21%  Similarity=0.353  Sum_probs=105.7

Q ss_pred             CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      |+..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.+.|++|++  +++|++++|+|+|||..
T Consensus       234 ~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p~~  311 (369)
T PRK14288        234 EKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVKHP  311 (369)
T ss_pred             CCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCCCC
Confidence            4567999999999999999999999999999999999999999999999999899999998  99999999999999987


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      ++ ..+|||||+|+|.||+.  |+++|+++|+++++.
T Consensus       312 ~~-~~~GDL~v~~~v~~P~~--ls~~q~~~l~~~~~~  345 (369)
T PRK14288        312 ES-SYRGSLIVELQVIYPKS--LNKEQQELLEKLHAS  345 (369)
T ss_pred             CC-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            63 46899999999999999  999999999999974

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=8.6e-28  Score=211.48  Aligned_cols=110  Identities=27%  Similarity=0.470  Sum_probs=103.8

Q ss_pred             CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965           3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN   82 (179)
Q Consensus         3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~   82 (179)
                      ..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+|||++.+.|+||+|  +++|++++|+|+|||..++
T Consensus       241 ~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~~~~  318 (378)
T PRK14278        241 GPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPHLRS  318 (378)
T ss_pred             CCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCCCCC
Confidence            46799999999999999999999999999999999999999999999777799999999  9999999999999998654


Q ss_pred             CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                       ..+|||||+|+|.||++  |+++++++|+++++.
T Consensus       319 -~~~GDL~V~~~V~~P~~--Ls~~qk~~l~~~~~~  350 (378)
T PRK14278        319 -GGRGDLHAHVEVVVPTR--LDHEDIELLRELKAL  350 (378)
T ss_pred             -CCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHhh
Confidence             47899999999999999  999999999999964

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=9.2e-28  Score=210.90  Aligned_cols=111  Identities=23%  Similarity=0.439  Sum_probs=104.8

Q ss_pred             CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965           3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN   82 (179)
Q Consensus         3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~   82 (179)
                      ..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.+.|++|+|  +++|++++|+|+|||..++
T Consensus       248 ~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ri~G~G~P~~~~  325 (372)
T PRK14286        248 GPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVFRLKGHGMPYLGA  325 (372)
T ss_pred             CCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEEEECCCCCCCCCC
Confidence            45799999999999999999999999999999999999999999999999999999999  9999999999999998764


Q ss_pred             CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCC
Q psy4965          83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR  118 (179)
Q Consensus        83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~  118 (179)
                       ..+|||||+|+|.||+.  |+++|+++|++++...
T Consensus       326 -~~~GDL~V~~~V~~P~~--Ls~~qk~~l~~l~~~~  358 (372)
T PRK14286        326 -YGKGDQHVIVKIEIPKK--ITRRQRELIEEFARES  358 (372)
T ss_pred             -CCCCcEEEEEEEECCCC--CCHHHHHHHHHHHHhc
Confidence             46899999999999999  9999999999999754

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=9.6e-28  Score=211.67  Aligned_cols=110  Identities=26%  Similarity=0.415  Sum_probs=103.6

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       256 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~ri~g~G~p~~~  332 (386)
T PRK14277        256 GGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG--TQTGTKFRLRGKGIPHLR  332 (386)
T ss_pred             CCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC--CCCCCEEEECCCCCCCCC
Confidence            346899999999999999999999999999999999999999999999999 89999999  999999999999999876


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + ..+|||||+|+|.||+.  |+++|+++|++++..
T Consensus       333 ~-~~~GDL~v~~~V~~P~~--Ls~~qk~~l~~l~~~  365 (386)
T PRK14277        333 G-RGRGDQIVKVYIEVPKK--LTEKQKELLREFEKL  365 (386)
T ss_pred             C-CCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHhh
Confidence            4 36899999999999999  999999999999864

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.1e-28  Score=209.89  Aligned_cols=111  Identities=28%  Similarity=0.489  Sum_probs=105.8

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      |+++|||||+|.+++|+.|+|.|+||++++.|++.+|++|+++.|+||||+ ++|+||+|  +++|++++|+|+|||..+
T Consensus       241 Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gkG~p~~~  317 (371)
T COG0484         241 GGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGKGMPKLR  317 (371)
T ss_pred             CCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCCCccccC
Confidence            678999999999999999999999999999999999999999999999999 99999999  999999999999999876


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR  118 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~  118 (179)
                      + ..+|||||+|+|++|++  |+.+|+++|++++...
T Consensus       318 ~-~~~GDl~v~v~v~~P~~--ls~~q~~lL~~~~~~~  351 (371)
T COG0484         318 S-GGRGDLYVRVKVETPKN--LSDEQKELLEEFAKSL  351 (371)
T ss_pred             C-CCcCCEEEEEEEEcCCC--CCHHHHHHHHHHHHhh
Confidence            5 46799999999999999  9999999999998744

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=9.9e-28  Score=212.27  Aligned_cols=110  Identities=26%  Similarity=0.522  Sum_probs=103.9

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       263 ~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~G~~~ri~g~G~P~~~  339 (397)
T PRK14281        263 GGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAG--TQPETMLRIPGKGIGHLR  339 (397)
T ss_pred             CCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCCc--cCCCcEEEEcCCCCCCCC
Confidence            357899999999999999999999999999999999999999999999998 89999999  999999999999999765


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + ..+|||||+|+|.||+.  |+++|+++|++|+..
T Consensus       340 ~-~~~GDL~V~~~V~~P~~--Ls~~qk~~l~~l~~~  372 (397)
T PRK14281        340 G-SGRGDQYVRVNVFVPKE--VSHQDKELLKELKKS  372 (397)
T ss_pred             C-CCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHhh
Confidence            4 47899999999999999  999999999999963

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=1.7e-27  Score=209.38  Aligned_cols=109  Identities=22%  Similarity=0.413  Sum_probs=103.1

Q ss_pred             CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965           3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN   82 (179)
Q Consensus         3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~   82 (179)
                      ..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..++
T Consensus       245 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~~~  321 (376)
T PRK14280        245 GPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKGKGVPNVRG  321 (376)
T ss_pred             CCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcCCCCCCCCC
Confidence            46899999999999999999999999999999999999999999999998 89999999  9999999999999998754


Q ss_pred             CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                       ..+|||||+|+|.||+.  |+++++++|++++..
T Consensus       322 -~~~GDL~v~~~v~~P~~--Ls~~q~~~l~~l~~~  353 (376)
T PRK14280        322 -YGQGDQYVVVRVVTPTK--LTDRQKELLREFAEL  353 (376)
T ss_pred             -CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence             46899999999999999  999999999999864

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=1.8e-27  Score=210.08  Aligned_cols=110  Identities=25%  Similarity=0.403  Sum_probs=103.9

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|.+++|+.|+|+|+||++++.|||.+||+|+++.|+||||+.+.|+||+|  +++|++++|+|+|||...
T Consensus       263 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g--~~~g~~iri~G~G~p~~~  340 (389)
T PRK14295        263 GGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG--TPNGRVLRVRGKGAVRKD  340 (389)
T ss_pred             CCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc--cCCCcEEEECCCCcCCCC
Confidence            456899999999999999999999999999999999999999999999998899999999  999999999999999743


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                        +.+|||||+|+|.||++  |+++|+++|++++..
T Consensus       341 --~~~GDL~i~~~v~~P~~--Ls~~qk~~l~~l~~~  372 (389)
T PRK14295        341 --GTRGDLLVTVEVAVPKD--LSGKAREALEAFREA  372 (389)
T ss_pred             --CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence              46899999999999999  999999999999864

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=2.2e-27  Score=208.84  Aligned_cols=110  Identities=25%  Similarity=0.408  Sum_probs=104.0

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       242 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~g~G~p~~~  318 (377)
T PRK14298        242 GAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLKDKGMPRLH  318 (377)
T ss_pred             CCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEECCCCCCCCC
Confidence            567899999999999999999999999999999999999999999999999 89999999  999999999999999876


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + ..+|||||+|+|.||+.  |+.+++++|++++..
T Consensus       319 ~-~~~GDL~V~~~V~~P~~--ls~~~~~ll~~l~~~  351 (377)
T PRK14298        319 G-HGKGDQLVKVIVKTPTK--LTQEQKELLREFDEL  351 (377)
T ss_pred             C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            4 46899999999999998  999999999999864

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=4e-27  Score=206.78  Aligned_cols=110  Identities=19%  Similarity=0.372  Sum_probs=103.7

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~  315 (371)
T PRK14287        239 GGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPNVH  315 (371)
T ss_pred             CCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccCCC
Confidence            347899999999999999999999999999999999999999999999998 89999999  999999999999999876


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + ..+|||||+|+|.||+.  |+.+++++|++++..
T Consensus       316 ~-~~~GDL~V~~~v~~P~~--l~~~q~~ll~~l~~~  348 (371)
T PRK14287        316 G-RGQGDQHVQVRVVTPKN--LTEKEKELMREFAGM  348 (371)
T ss_pred             C-CCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHhh
Confidence            4 46899999999999999  999999999999964

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=6e-27  Score=206.24  Aligned_cols=109  Identities=22%  Similarity=0.370  Sum_probs=103.0

Q ss_pred             CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965           3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN   82 (179)
Q Consensus         3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~   82 (179)
                      ..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+ +.|+||+|  +++|++++|+|+|||..++
T Consensus       248 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~i~g~G~p~~~~  324 (380)
T PRK14276        248 GPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFRLRGKGAPKLRG  324 (380)
T ss_pred             CCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEEECCCCcCCCCC
Confidence            46799999999999999999999999999999999999999999999999 89999999  9999999999999998754


Q ss_pred             CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                       ..+|||||+|+|.||+.  |+++++++|++++..
T Consensus       325 -~~~GDL~V~~~v~~P~~--l~~~q~~~l~~~~~~  356 (380)
T PRK14276        325 -GGNGDQHVTVNIVTPTK--LNDAQKEALKAFAKA  356 (380)
T ss_pred             -CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence             46899999999999999  999999999999853

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=5.4e-27  Score=206.50  Aligned_cols=111  Identities=22%  Similarity=0.454  Sum_probs=104.2

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       249 ~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~ri~g~G~p~~~  325 (380)
T PRK14297        249 GGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFRLKGKGVPRVN  325 (380)
T ss_pred             CCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEEEcCCCcCCCC
Confidence            346899999999999999999999999999999999999999999999998 89999999  999999999999999765


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR  118 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~  118 (179)
                      + +.+|||||+|+|.||+.  |+++++++|+++++..
T Consensus       326 ~-~~~GDL~v~~~v~~P~~--ls~~q~~~l~~~~~~~  359 (380)
T PRK14297        326 S-TGRGNQYVTVIVDIPKK--LNSKQKEALTMFMEAS  359 (380)
T ss_pred             C-CCCCcEEEEEEEEcCCC--CCHHHHHHHHHHHHhc
Confidence            4 47899999999999999  9999999999999754

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=7.3e-27  Score=205.19  Aligned_cols=110  Identities=21%  Similarity=0.353  Sum_probs=104.3

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.+.|+||+|  +++|++++|+|+|||..+
T Consensus       242 ~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g~G~p~~~  319 (372)
T PRK14300        242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRSKGMSKMR  319 (372)
T ss_pred             CCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECCCCCCCCC
Confidence            457899999999999999999999999999999999999999999999998899999999  999999999999999765


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS  116 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~  116 (179)
                      + ..+|||||+|+|.||++  ||++|+++|++++.
T Consensus       320 ~-~~~GDL~V~~~v~~P~~--ls~~qk~~l~~l~~  351 (372)
T PRK14300        320 S-TIRGDMLTHIHVEVPKN--LSKRQRELLEEFKK  351 (372)
T ss_pred             C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHh
Confidence            3 46899999999999999  99999999999985

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=6.9e-27  Score=206.52  Aligned_cols=111  Identities=24%  Similarity=0.460  Sum_probs=104.2

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccC-CcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD-DRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ld-Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      +..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||| |+.+.|+||+|  +++|++++|+|+|||..
T Consensus       255 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g--~~~g~~~~i~g~G~p~~  332 (391)
T PRK14284        255 GAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEG--IQSGTILKVRGQGFPNV  332 (391)
T ss_pred             CCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCc--cCCCeEEEECCCCCCCC
Confidence            4578999999999999999999999999999999999999999999999 67799999999  99999999999999987


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      ++ ..+|||||+|+|.||+.  |+++++++|++++..
T Consensus       333 ~~-~~~GDL~V~~~v~~P~~--l~~~q~~ll~~l~~~  366 (391)
T PRK14284        333 HG-KGRGDLLVRISVETPQN--LSEEQKELLRQFAAT  366 (391)
T ss_pred             CC-CCCCcEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            54 46899999999999999  999999999999853

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.95  E-value=7.1e-27  Score=206.55  Aligned_cols=109  Identities=26%  Similarity=0.402  Sum_probs=102.6

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||...
T Consensus       270 ~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i~v~Ip~g--~~~g~~iri~g~G~p~~~  346 (392)
T PRK14279        270 GAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VGVKVPAG--TADGRILRVRGRGVPKRS  346 (392)
T ss_pred             CCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce-EEEEECCC--CCCCCEEEECCCCCCCCC
Confidence            346799999999999999999999999999999999999999999999998 89999999  999999999999999743


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                        +.+|||||+|+|.||++  |+++|+++|++++..
T Consensus       347 --~~~GDL~I~~~v~~P~~--Ls~~q~~~l~~~~~~  378 (392)
T PRK14279        347 --GGAGDLLVTVKVAVPPN--LDGAAAEALEAYAEA  378 (392)
T ss_pred             --CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence              46899999999999999  999999999999964

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=1.2e-26  Score=203.31  Aligned_cols=113  Identities=30%  Similarity=0.441  Sum_probs=105.6

Q ss_pred             CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965           3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN   82 (179)
Q Consensus         3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~   82 (179)
                      ..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+.+.|+||+|  +++|++++|+|+|||..+.
T Consensus       244 ~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~irl~GkG~p~~~~  321 (365)
T PRK14285        244 QQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQIIIKNEGMPILHT  321 (365)
T ss_pred             CCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEEEECCCCccCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999  9999999999999998764


Q ss_pred             CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCCCC
Q psy4965          83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS  120 (179)
Q Consensus        83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~~~  120 (179)
                       ..+|||||+|+|.||+.  |+++++++|++++...+.
T Consensus       322 -~~~GDL~V~~~v~~P~~--l~~~q~~~l~~l~~~~~~  356 (365)
T PRK14285        322 -EKFGNLILIIKIKTPKN--LNSNAIKLLENLSKELKD  356 (365)
T ss_pred             -CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHHhcc
Confidence             36799999999999999  999999999999865433

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=1.3e-26  Score=203.65  Aligned_cols=110  Identities=26%  Similarity=0.445  Sum_probs=103.8

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       241 ~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~~~  317 (373)
T PRK14301        241 GGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRGKGLPYLG  317 (373)
T ss_pred             CCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcCCCCCCCC
Confidence            456899999999999999999999999999999999999999999999999 99999999  999999999999999876


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + ..+|||||+|+|.||+.  |+++++++|++++..
T Consensus       318 ~-~~~GDL~I~~~V~~P~~--l~~~q~~~l~~l~~~  350 (373)
T PRK14301        318 S-SQKGDLLVEVSVVTPTK--LTKRQEELLREFEAL  350 (373)
T ss_pred             C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            4 46899999999999998  999999999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=1.5e-26  Score=203.91  Aligned_cols=116  Identities=31%  Similarity=0.477  Sum_probs=106.0

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      |..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+.+.|+||+|  +++|++++|+|+|||..+
T Consensus       252 g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g--~~~G~~i~i~G~G~p~~~  329 (382)
T PRK14291        252 GGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG--TKEGDKIRVPGKGMPRLK  329 (382)
T ss_pred             CCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCCEEEECCCCCCCCC
Confidence            578999999999999999999999999999999999999999999999999899999999  999999999999999876


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCC------HHHHHHHHHhcCCCCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNN------DAKLKELEALLSPRPS  120 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~------~~~~~~l~~~l~~~~~  120 (179)
                      . ..+|||||+|+|.||+...|+      ++++++|++|+....+
T Consensus       330 ~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~  373 (382)
T PRK14291        330 G-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPE  373 (382)
T ss_pred             C-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCC
Confidence            4 368999999999999843489      9999999998765433

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=1.9e-26  Score=202.42  Aligned_cols=110  Identities=24%  Similarity=0.367  Sum_probs=103.5

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~-i~v~ip~g--~~~g~~~~i~g~G~p~~~  315 (371)
T PRK10767        239 GGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGR-VKLKIPEG--TQTGKLFRLRGKGVKSVR  315 (371)
T ss_pred             CCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCc-EEEEeCCC--CCCCCEEEECCCCcCCCC
Confidence            456899999999999999999999999999999999999999999999995 99999999  999999999999999865


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + ..+|||||+|+|.||+.  |+.+++++|++++..
T Consensus       316 ~-~~~GDL~v~~~v~~P~~--l~~~~~~ll~~l~~~  348 (371)
T PRK10767        316 S-GARGDLYCQVVVETPVN--LTKRQKELLEEFEES  348 (371)
T ss_pred             C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            4 47899999999999998  999999999999963

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=2e-26  Score=202.24  Aligned_cols=112  Identities=26%  Similarity=0.488  Sum_probs=104.9

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+.+.|+||+|  +++|++++|+|+|||..+
T Consensus       253 ~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~g~~iri~GkG~p~~~  330 (369)
T PRK14282        253 GGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQPETVFRLKGKGLPNMR  330 (369)
T ss_pred             CCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCCCCEEEECCCCCCCCC
Confidence            456899999999999999999999999999999999999999999999999999999999  999999999999999764


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR  118 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~  118 (179)
                      + +.+|||||+|+|.+|+.  |+.+++++|++++...
T Consensus       331 ~-~~~GDL~V~~~v~~P~~--l~~~~~~ll~~l~~~~  364 (369)
T PRK14282        331 Y-GRRGDLIVNVHVEIPKR--LSREERKLLKELAKKR  364 (369)
T ss_pred             C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHhc
Confidence            3 46899999999999998  9999999999998643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=2e-26  Score=202.01  Aligned_cols=110  Identities=24%  Similarity=0.428  Sum_probs=103.5

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       241 ~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~G~p~~~  317 (366)
T PRK14294        241 GGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGKGIPSLR  317 (366)
T ss_pred             CCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCCCCCCCC
Confidence            456899999999999999999999999999999999999999999999998 79999999  999999999999999775


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + ..+|||||+|+|.||+.  |+.+++++|++++..
T Consensus       318 ~-~~~GDL~V~~~v~~P~~--l~~~q~~ll~~~~~~  350 (366)
T PRK14294        318 G-GGRGDQIIEVEVKVPTR--LTKKQEELLTEFARL  350 (366)
T ss_pred             C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHh
Confidence            4 36899999999999998  999999999999964

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=2.7e-26  Score=195.71  Aligned_cols=105  Identities=22%  Similarity=0.338  Sum_probs=99.6

Q ss_pred             CccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCC
Q psy4965           5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPY   84 (179)
Q Consensus         5 ~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~   84 (179)
                      .|||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|++|++  +++|++++|+|+|||...  +
T Consensus       181 ~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~g~~~rl~g~G~p~~~--~  255 (291)
T PRK14299        181 GGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQAGRKLRLKGKGWPRGP--A  255 (291)
T ss_pred             CCCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCCCCEEEECCCCCCCCC--C
Confidence            399999999999999999999999999999999999999999999998 99999998  999999999999999643  4


Q ss_pred             CCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965          85 EKGTLYIKFDVQFPESYFNNDAKLKELEALLS  116 (179)
Q Consensus        85 ~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~  116 (179)
                      .+|||||+|+|.||+.  |+++++++|++++.
T Consensus       256 ~~GDL~v~~~V~~P~~--l~~~~~~~l~~l~~  285 (291)
T PRK14299        256 GRGDQYAEVRITIPTR--PTPEEERLYKQLAE  285 (291)
T ss_pred             CCCCEEEEEEEECCCC--CCHHHHHHHHHHHh
Confidence            7899999999999999  99999999999874

>KOG0712|consensus

Probab=99.94  E-value=8.6e-27  Score=200.79  Aligned_cols=110  Identities=53%  Similarity=0.956  Sum_probs=105.8

Q ss_pred             CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      |+..|||++|+|.+++|+.|.|+|+||+++.+|+|.|||||+.+.+.|||||.+.++++||+|++||++++|.|+|||++
T Consensus       228 ~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~  307 (337)
T KOG0712|consen  228 PGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIF  307 (337)
T ss_pred             CCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhc
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALL  115 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l  115 (179)
                      +++  +|||||.|+|+||+   ++++++..|+.+|
T Consensus       308 ~~~--~g~lyi~~~v~fp~---~~~~~~~~l~~~l  337 (337)
T KOG0712|consen  308 RNP--KGDLYIKFEVKFPK---LSPSQLKMLEDLL  337 (337)
T ss_pred             cCC--CCcEEEEEEEEcCC---CChHHHHHHHhhC
Confidence            985  99999999999999   8999999998876

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.94  E-value=4.1e-26  Score=198.99  Aligned_cols=110  Identities=25%  Similarity=0.460  Sum_probs=103.2

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|.+|+|  +++|++++|+|+|||..+
T Consensus       244 ~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~-i~v~ip~g--~~~g~~~~i~g~G~p~~~  320 (354)
T TIGR02349       244 GGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGD-VKLKIPAG--TQSGTVFRLKGKGVPRLR  320 (354)
T ss_pred             CCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCce-EEEEECCc--ccCCcEEEECCCCcCCCC
Confidence            456899999999999999999999999999999999999999999999995 99999999  999999999999999876


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + ..+|||||+|+|.||+.  |+.+++++|+++|..
T Consensus       321 ~-~~~GDL~i~~~v~~P~~--l~~~~~~~l~~~~~~  353 (354)
T TIGR02349       321 G-NGRGDLLVTVKVETPKN--LSKEQKELLEELAEA  353 (354)
T ss_pred             C-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            4 37899999999999998  999999999999853

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=3.1e-26  Score=200.70  Aligned_cols=114  Identities=21%  Similarity=0.376  Sum_probs=106.2

Q ss_pred             CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      ++..||||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|++|+ +.|+||+|  +++|++++|+|+|||..
T Consensus       246 ~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~g~G~p~~  322 (365)
T PRK14290        246 YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIKGAGMPHL  322 (365)
T ss_pred             CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEECCCCCCCC
Confidence            4678999999999999999999999999999999999999999999999997 99999999  99999999999999976


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCCCCC
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPS  120 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~~~~  120 (179)
                      .+ ..+|||||+|+|.+|+.  |+++++++|+++++.+.+
T Consensus       323 ~~-~~~GDL~V~~~V~~P~~--l~~~~~~ll~~~~~~~~~  359 (365)
T PRK14290        323 NG-HGSGDLLVRINVEVPKR--LTSKQKELIREFFDIKEN  359 (365)
T ss_pred             CC-CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHhhhc
Confidence            54 36899999999999998  999999999999976544

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=7.2e-26  Score=199.26  Aligned_cols=108  Identities=31%  Similarity=0.507  Sum_probs=102.3

Q ss_pred             CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965           3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN   82 (179)
Q Consensus         3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~   82 (179)
                      ..+|||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+ +.|+||+|  +++|++++|+|+|||....
T Consensus       248 ~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~~ri~g~G~p~~~~  324 (378)
T PRK14283        248 GEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGP-VELKIPAG--TQSGTTFRLKGHGMPSLRW  324 (378)
T ss_pred             CCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCce-EEEEeCCC--CCCCCEEEECCCCCCCCCC
Confidence            56899999999999999999999999999999999999999999999995 99999999  9999999999999997654


Q ss_pred             CCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965          83 PYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS  116 (179)
Q Consensus        83 ~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~  116 (179)
                       ..+|||||+|+|.||+.  |+++++++|++++.
T Consensus       325 -~~~GdL~v~~~v~~P~~--l~~~q~~ll~~~~~  355 (378)
T PRK14283        325 -SGKGNLYVKVKVVVPKK--LSPKQKELLREFAS  355 (378)
T ss_pred             -CCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHh
Confidence             46899999999999999  99999999999985

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.94  E-value=7.5e-26  Score=198.89  Aligned_cols=111  Identities=28%  Similarity=0.472  Sum_probs=104.0

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|++|++  +++|++++|+|+|||...
T Consensus       244 ~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G~p~~~  320 (374)
T PRK14293        244 GGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKGVPRLG  320 (374)
T ss_pred             CCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCCCCCCC
Confidence            346899999999999999999999999999999999999999999999998 89999998  999999999999999876


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      +.+.+|||||+|+|.||+.  |+++++++|++++..
T Consensus       321 ~~~~~GDL~v~~~v~~P~~--l~~~~~~l~~~l~~~  354 (374)
T PRK14293        321 NPVARGDHLITVKVKIPTR--ISDEERELLEKLAKI  354 (374)
T ss_pred             CCCCcCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            5446899999999999998  999999999999964

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.93  E-value=2.7e-25  Score=190.63  Aligned_cols=108  Identities=23%  Similarity=0.393  Sum_probs=101.9

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||+|+|++++|+.|+|+|+||++++.|||.+|++|+++.|+|++|+ +.|++|+|  +++|++++|+|+|||..+
T Consensus       186 ~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g~G~p~~~  262 (306)
T PRK10266        186 GGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKGKGLVSKK  262 (306)
T ss_pred             CCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECCCCCCCCC
Confidence            356899999999999999999999999999999999999999999999998 89999999  999999999999999753


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                         .+|||||+|+|.||+.  |+++++++|++|+..
T Consensus       263 ---~~GdL~v~~~v~~P~~--l~~~q~~l~~~l~~~  293 (306)
T PRK10266        263 ---QTGDLYAVLKIVMPPK--PDEKTAALWQQLADA  293 (306)
T ss_pred             ---CCCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence               5899999999999999  999999999999864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=6.8e-25  Score=193.48  Aligned_cols=110  Identities=21%  Similarity=0.422  Sum_probs=103.9

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      +..+|||+|+|++++|+.|+|+++||++++.|+|.+||+|+++.|+|+||+ +.|+||+|  +++|++++|+|+|||..+
T Consensus       255 ~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~~~  331 (386)
T PRK14289        255 GGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQPGKVLRLRNKGLPSVN  331 (386)
T ss_pred             CCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cCCCcEEEECCCCcCCCC
Confidence            456899999999999999999999999999999999999999999999998 89999999  999999999999999765


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      + +.+|||||+|+|.||+.  |+++|+++|++|+..
T Consensus       332 ~-~~~GDL~v~~~v~~P~~--l~~~q~~~l~~l~~~  364 (386)
T PRK14289        332 G-YGTGDLLVNVSVYIPET--LSKEEKQTLEKMENS  364 (386)
T ss_pred             C-CCCCcEEEEEEEEeCCC--CCHHHHHHHHHHHhh
Confidence            4 47899999999999998  999999999999974

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=8.6e-25  Score=191.91  Aligned_cols=106  Identities=25%  Similarity=0.461  Sum_probs=100.5

Q ss_pred             ccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCC
Q psy4965           6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYE   85 (179)
Q Consensus         6 GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~   85 (179)
                      |||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|++|+|  +++|++++|+|+|||..++ ..
T Consensus       243 GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~~i~g~G~p~~~~-~~  318 (371)
T PRK14292        243 GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGP-QVIEVKPG--TQHGDLHRLRGQGMPRLQG-AG  318 (371)
T ss_pred             CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCC-EEEecCCC--cCCCcEEEECCCCCCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999 58999999  9999999999999998654 36


Q ss_pred             CCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          86 KGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        86 ~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      +|||||+|+|.||+.  |+++++++|++++..
T Consensus       319 ~GDL~V~~~v~~P~~--l~~~q~~ll~~~~~~  348 (371)
T PRK14292        319 TGDLIVEYEIAVPKQ--LSPEAREALEAYARA  348 (371)
T ss_pred             CCCEEEEEEEECCCC--CCHHHHHHHHHHHhh
Confidence            899999999999998  999999999999853

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.90  E-value=9.6e-24  Score=148.29  Aligned_cols=81  Identities=37%  Similarity=0.549  Sum_probs=70.0

Q ss_pred             cEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCCCH
Q psy4965          26 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNND  105 (179)
Q Consensus        26 DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l~~  105 (179)
                      ||++++.|||++|++|+++.|+|+||+.+.|++|++  +++|+.++|+|+|||...++..+|||||+|+|.||++  ||+
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~--ls~   76 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKK--LSP   76 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SS--TSH
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCC--CCH
Confidence            899999999999999999999999999999999999  9999999999999999887568999999999999999  999


Q ss_pred             HHHHH
Q psy4965         106 AKLKE  110 (179)
Q Consensus       106 ~~~~~  110 (179)
                      +|+++
T Consensus        77 ~qk~l   81 (81)
T PF01556_consen   77 EQKEL   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            88764

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.89  E-value=1.5e-22  Score=187.93  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=91.9

Q ss_pred             CccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCC
Q psy4965           5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPY   84 (179)
Q Consensus         5 ~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~   84 (179)
                      +|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+|  +++|++++|+|+|||..+  +
T Consensus       726 ~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~~--~  800 (871)
T TIGR03835       726 CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKTK--Y  800 (871)
T ss_pred             CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCCC--C
Confidence            499999999999999999999999999999999999999999999998 99999999  999999999999999543  4


Q ss_pred             CCCCeEEEEEEe-CCCCCCCCHHHHHHHHHh
Q psy4965          85 EKGTLYIKFDVQ-FPESYFNNDAKLKELEAL  114 (179)
Q Consensus        85 ~~GdL~I~f~V~-fP~~~~l~~~~~~~l~~~  114 (179)
                      .+|||||+|.|. +++++.-+.-|.+.+-+|
T Consensus       801 ~RGDLyV~f~V~~~~k~~~~~n~qv~~f~~l  831 (871)
T TIGR03835       801 DKGSLIVHLYYSSVMKKNDRTNVQVQQFNKL  831 (871)
T ss_pred             CCCCEEEEEEEeeccccCCcCChHHHHHHHH
Confidence            689999999996 456655555555544443

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=6.2e-11  Score=101.31  Aligned_cols=70  Identities=27%  Similarity=0.438  Sum_probs=63.6

Q ss_pred             CeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCC
Q psy4965          20 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE   99 (179)
Q Consensus        20 F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~   99 (179)
                      +.|+|.||++++.|||.||++|+++.| +++|+.+.|+||+|  +++|++++++|+|++.       |||||+|.|+-+.
T Consensus       125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~  194 (291)
T PRK14299        125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP  194 (291)
T ss_pred             CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence            467899999999999999999999998 58898899999999  9999999999999962       9999999998433

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.09  E-value=3.7e-10  Score=97.09  Aligned_cols=76  Identities=18%  Similarity=0.357  Sum_probs=64.2

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEE----eccC--C-------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCC
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVI----KHLD--D-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGT   88 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i----~~ld--G-------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~Gd   88 (179)
                      |+|.||++++.|||.||++|+.+.|    .+++  |       +.+.|+||+|  +++|++++++|+|||...+ ..+||
T Consensus       115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GD  191 (306)
T PRK10266        115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGENG-GPNGD  191 (306)
T ss_pred             CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCCCC-CCCcc
Confidence            4689999999999999999996554    3444  3       5699999999  9999999999999997543 46899


Q ss_pred             eEEEEEEeCCCCC
Q psy4965          89 LYIKFDVQFPESY  101 (179)
Q Consensus        89 L~I~f~V~fP~~~  101 (179)
                      |||+|+|. |...
T Consensus       192 l~v~i~v~-ph~~  203 (306)
T PRK10266        192 LWLVIHIA-PHPL  203 (306)
T ss_pred             EEEEEEEc-CCCC
Confidence            99999998 8664

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.94  E-value=1.9e-09  Score=95.50  Aligned_cols=82  Identities=16%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             eCCcEEEEeccCHHHHhcCcEEEEecc-----------------------------------------------------
Q psy4965          23 QGINLVTTETITLTEALCGFTKVIKHL-----------------------------------------------------   49 (179)
Q Consensus        23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------------   49 (179)
                      +|.|+.+.+.|||.||+.|+++.|...                                                     
T Consensus       126 ~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G  205 (386)
T PRK14289        126 RGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNG  205 (386)
T ss_pred             CCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCc
Confidence            588999999999999999988766421                                                     


Q ss_pred             -------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCCCHHHHH
Q psy4965          50 -------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  109 (179)
Q Consensus        50 -------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l~~~~~~  109 (179)
                                         +.+.+.|+||+|  +++|++++|+|+|||...+ ..+|||||+|+|..|+.  +..+...
T Consensus       206 ~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~l~g~G~~~~~~-~~~GDL~v~v~v~~~~~--f~r~g~D  279 (386)
T PRK14289        206 EGKIIKKKCKKCGGEGIVYGEEVITVKIPAG--VAEGMQLSMNGKGNAGKHG-GVNGDLLVVIEEEPHPE--LIRDEND  279 (386)
T ss_pred             cccccCcCCCCCCCCcEEeeeEEEEEEeCCC--CCCCCEEEEeccccCCCCC-CCCccEEEEEEEecCCc--ccccccc
Confidence                               113689999999  9999999999999997543 46899999999999987  5554433

>KOG0713|consensus

Probab=98.85  E-value=4e-10  Score=97.18  Aligned_cols=100  Identities=41%  Similarity=0.629  Sum_probs=89.2

Q ss_pred             CCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCC
Q psy4965           3 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN   82 (179)
Q Consensus         3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~   82 (179)
                      +.|||+.|.+..-.|+.|.|+++++++++.+++..++.|+...+.|+|+..+.++....  ..|+..++..++|||..++
T Consensus       229 ~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~--~~p~~~~~~~~~~~~~l~~  306 (336)
T KOG0713|consen  229 GVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKI--TWPGARTRKKGEGMPLLKN  306 (336)
T ss_pred             cccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhc--cccchhhhhhhccchhhhc
Confidence            46999999999999999999999999999999999999999999999998766665444  8899999999999997766


Q ss_pred             CCCCCCeEEEEEEeCCCCCCCCH
Q psy4965          83 PYEKGTLYIKFDVQFPESYFNND  105 (179)
Q Consensus        83 ~~~~GdL~I~f~V~fP~~~~l~~  105 (179)
                      ....|++|+.|.+.||.+ .++.
T Consensus       307 ~~~~~~~~~t~~~~~~~~-~~~~  328 (336)
T KOG0713|consen  307 RNEKGNLYVTFDVEFPKS-SLSD  328 (336)
T ss_pred             cchhcceeEEecccCccc-ccch
Confidence            678999999999999965 2454

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.81  E-value=1.7e-08  Score=89.12  Aligned_cols=52  Identities=21%  Similarity=0.284  Sum_probs=43.8

Q ss_pred             EEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCCCHHHHH
Q psy4965          53 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  109 (179)
Q Consensus        53 ~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l~~~~~~  109 (179)
                      .+.|+||+|  +++|++++|+|+|+|...+ ..+|||||+|.|..|..  ++.+...
T Consensus       217 ~~~V~IppG--~~~G~~i~l~g~G~~~~~~-~~~GDL~v~v~v~~~~~--f~r~g~D  268 (374)
T PRK14293        217 KLKINIPAG--VDTGTRLRVSGEGDAGLRG-GPPGDLYVYLFVKNDPE--FRRDGIN  268 (374)
T ss_pred             EEEEEeCCC--CCCCCEEEEccCccCCCCC-CCCcCEEEEEEEeCCCc--cChhhhc
Confidence            578999999  9999999999999987543 46799999999999887  6665543

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.81  E-value=2.8e-08  Score=87.78  Aligned_cols=76  Identities=22%  Similarity=0.319  Sum_probs=64.4

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+++.|||.||+.|.++.|..-                                                    
T Consensus       115 ~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~  194 (373)
T PRK14301        115 QAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGR  194 (373)
T ss_pred             CCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceee
Confidence            4689999999999999999998876431                                                    


Q ss_pred             ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                      ..+.+.|.||+|  +++|++++++|+|+|...+ +..|||||+|.|.-+..
T Consensus       195 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDLiv~i~v~~h~~  258 (373)
T PRK14301        195 VITHPCPKCKGSGIVQQTRELKVRIPAG--VDTGSRLRLRGEGEPGVHG-GPPGDLYVVITVEDDKI  258 (373)
T ss_pred             ecCCCCCCCCCCceeccceEEEEEeCCC--CcCCCEEEEeccccCCCCC-CCCcCEEEEEEEEECCC
Confidence                            114699999999  9999999999999987643 46899999999997765

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.77  E-value=2.9e-08  Score=87.65  Aligned_cols=75  Identities=23%  Similarity=0.343  Sum_probs=63.2

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL--------D-------------------------------------------   50 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d-------------------------------------------   50 (179)
                      ++|.|+.+.+.|||.||+.|.++.|...        +                                           
T Consensus       121 ~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~  200 (372)
T PRK14286        121 QRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGT  200 (372)
T ss_pred             CCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceee
Confidence            4688999999999999999998776431        1                                           


Q ss_pred             -----------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          51 -----------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        51 -----------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                       -+.+.|+||+|  +++|++++++|+|+|...+ ..+|||||.|+|. |..
T Consensus       201 ~~~~~C~~C~G~g~~~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~-~h~  263 (372)
T PRK14286        201 VISNPCKTCGGQGLQEKRRTINIKIPPG--VETGSRLKVSGEGEAGPNG-GPHGDLYVVTHIK-KHE  263 (372)
T ss_pred             EecccCCCCCCCcEEecceEEEEEECCC--CCCCCEEEECCccccCCCC-CCCceEEEEEEEc-cCC
Confidence                             15799999999  9999999999999998754 4679999999997 654

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.74  E-value=4.3e-08  Score=86.52  Aligned_cols=73  Identities=27%  Similarity=0.399  Sum_probs=61.4

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|.++.|..-                                                    
T Consensus       109 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  188 (371)
T PRK14287        109 RQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCE  188 (371)
T ss_pred             CCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCC
Confidence            4689999999999999999987765320                                                    


Q ss_pred             --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeC
Q psy4965          50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQF   97 (179)
Q Consensus        50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~f   97 (179)
                                          +.+.+.|.||+|  +++|++++++|+|+|...+ +..|||||+|+|.-
T Consensus       189 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~G~G~~~~~~-~~~GDL~v~i~v~~  253 (371)
T PRK14287        189 GTGKIIKQKCATCGGKGKVRKRKKINVKVPAG--IDHGQQLRVSGQGEAGVNG-GPPGDLYVVFNVKP  253 (371)
T ss_pred             CCCccccccCCCCCCeeEEeeeEEEEEEECCc--CCCCCEEEEccCCcCCCCC-CCCccEEEEEEEec
Confidence                                125689999999  9999999999999997654 47899999999974

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.73  E-value=5.6e-08  Score=85.60  Aligned_cols=76  Identities=24%  Similarity=0.350  Sum_probs=63.8

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+++.|||.||+.|.++.|..-                                                    
T Consensus       117 ~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~  196 (365)
T PRK14285        117 EKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGK  196 (365)
T ss_pred             CCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCccc
Confidence            4688999999999999999988766430                                                    


Q ss_pred             ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                      ..+.+.|+||+|  +++|++++++|+|++..++ ...|||||+|.|.-+..
T Consensus       197 ~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~~h~~  260 (365)
T PRK14285        197 IISNPCKSCKGKGSLKKKETIELKIPAG--IDDNQQIKMRGKGSVNPDN-QQYGDLYIKILIKPHKI  260 (365)
T ss_pred             ccCCCCCCCCCCCEEeccEEEEEEECCC--CCCCCEEEEeeccccCCCC-CCCCCEEEEEEEecCCC
Confidence                            014689999999  9999999999999987653 35799999999997665

>PRK14283 chaperone protein DnaJ; Provisional

Probab=98.72  E-value=6.5e-08  Score=85.53  Aligned_cols=76  Identities=28%  Similarity=0.389  Sum_probs=63.7

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+++.|||.+|+.|+++.|...                                                    
T Consensus       117 ~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  196 (378)
T PRK14283        117 QRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQ  196 (378)
T ss_pred             cCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCC
Confidence            4688999999999999999988765321                                                    


Q ss_pred             --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                          +.+.+.|.||+|  +++|++++++|+|||...+ +.+|||||+|+|.-+..
T Consensus       197 G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG--~~~G~~i~l~g~G~~~~~~-~~~GDLiv~i~v~~~~~  264 (378)
T PRK14283        197 GEGKIVEKPCSNCHGKGVVRETKTISVKIPAG--VETGSRLRVSGEGEMGDRG-GEPGDLYVVIKVKPHKI  264 (378)
T ss_pred             ccceecCCCCCCCCCceeeccceeEEEEECCC--CCCCcEEEEeccccCCCCC-CCCccEEEEEEEEcCCC
Confidence                                114688999999  9999999999999997754 57899999999986654

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.71  E-value=5.8e-08  Score=86.23  Aligned_cols=76  Identities=25%  Similarity=0.441  Sum_probs=63.4

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|+++.|..-                                                    
T Consensus       137 ~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  216 (389)
T PRK14295        137 RRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGL  216 (389)
T ss_pred             CCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeE
Confidence            4688999999999999999998776431                                                    


Q ss_pred             ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCC
Q psy4965          50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESY  101 (179)
Q Consensus        50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~  101 (179)
                                      ..+.+.|.||+|  +++|++++++|+|++...+ ..+|||||+|.|. |...
T Consensus       217 ~~~~~C~~C~G~g~~~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~-~h~~  280 (389)
T PRK14295        217 IADDPCLVCKGSGRAKSSRTMQVRIPAG--VSDGQRIRLRGKGAPGERG-GPAGDLYVVVHVD-PHPV  280 (389)
T ss_pred             EeccCCCCCCCCceEeeeeEEEEEeCCC--CCCCCEEEEcccccCCCCC-CCCccEEEEEEEe-cCCC
Confidence                            114699999999  9999999999999997654 4689999999997 6543

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.70  E-value=5.8e-08  Score=85.83  Aligned_cols=75  Identities=32%  Similarity=0.492  Sum_probs=62.8

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL--------D-------------------------------------------   50 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d-------------------------------------------   50 (179)
                      ++|.|+.+.+.|||.||+.|.++.|..-        +                                           
T Consensus       114 ~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  193 (376)
T PRK14280        114 RQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCN  193 (376)
T ss_pred             ccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCC
Confidence            4688999999999999999988766430        0                                           


Q ss_pred             ---------------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          51 ---------------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        51 ---------------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                           .+.+.|.||+|  +++|++++++|+|+|...+ ..+|||||+|.|. |..
T Consensus       194 G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G--~~~G~~i~l~G~G~~~~~~-~~~GDL~v~i~v~-~h~  260 (376)
T PRK14280        194 GTGQEIKEKCPTCHGKGKVRKRKKINVKIPAG--VDNGQQIRVSGEGEPGVNG-GPAGDLYVVFRVR-PHE  260 (376)
T ss_pred             CCCceecCCCCCCCCceEEEEEEEEEEEeCCC--CcCCcEEEEcccccCCCCC-CCCcCEEEEEEEe-cCC
Confidence                                 14689999999  9999999999999997654 4789999999998 544

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.70  E-value=6.4e-08  Score=85.79  Aligned_cols=75  Identities=29%  Similarity=0.462  Sum_probs=62.1

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL--------D-------------------------------------------   50 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d-------------------------------------------   50 (179)
                      ++|.|+.+.+.|||.|++.|.++.|..-        +                                           
T Consensus       126 ~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  205 (386)
T PRK14277        126 QKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCH  205 (386)
T ss_pred             CCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCC
Confidence            3688999999999999999988766431        1                                           


Q ss_pred             ---------------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          51 ---------------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        51 ---------------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                           .+.+.|+||+|  +++|++++|+|+|||...+ ..+|||||+|+|+ |..
T Consensus       206 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~-~h~  272 (386)
T PRK14277        206 GEGKIITDPCNKCGGTGRIRRRRKIKVNIPAG--IDDGQMITLRGEGEPGIKG-GPNGDLYIVIKVK-PHP  272 (386)
T ss_pred             cceeeccCCCCCCCCCcEEeeeeEEEEecCCC--ccCCcEEEEccccccCCCC-CCCccEEEEEEEe-cCC
Confidence                                 14689999999  9999999999999996543 4689999999998 544

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.70  E-value=5.6e-08  Score=85.97  Aligned_cols=75  Identities=29%  Similarity=0.357  Sum_probs=62.8

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL--------D-------------------------------------------   50 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d-------------------------------------------   50 (179)
                      ++|.|+.+.+.|||.||+.|.++.|..-        +                                           
T Consensus       112 ~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  191 (377)
T PRK14298        112 RRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCH  191 (377)
T ss_pred             CCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCC
Confidence            4688999999999999999988776431        1                                           


Q ss_pred             ---------------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          51 ---------------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        51 ---------------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                           .+.+.|.||||  +++|++++++|+|++...+ +..|||||+|.|. |..
T Consensus       192 G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG--~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~-~h~  258 (377)
T PRK14298        192 GRGQVIESPCPVCSGTGKVRKTRKITVNVPAG--ADSGLRLKLSGEGEAGSPG-APSGDLYIVLHVK-EHD  258 (377)
T ss_pred             CCCcccCCCCCCCCCccEEEEEEEEEecCCCC--CCCCCEEEEecccCCCCCC-CCCcCEEEEEEEe-cCC
Confidence                                 14689999999  9999999999999996544 5789999999988 654

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.69  E-value=5.5e-08  Score=85.69  Aligned_cols=78  Identities=21%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|+++.|...                                                    
T Consensus       110 ~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  189 (371)
T PRK14292        110 ARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTC  189 (371)
T ss_pred             cCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCC
Confidence            3688999999999999999988765431                                                    


Q ss_pred             ---------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCCCHH
Q psy4965          50 ---------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDA  106 (179)
Q Consensus        50 ---------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l~~~  106 (179)
                                           +.+.+.|.||+|  +++|++++++|+|++...+   .|||||+|+|..+..  ++.+
T Consensus       190 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~G~G~~~~~~---~GDL~v~i~v~~h~~--f~r~  260 (371)
T PRK14292        190 RGEGQIITDPCTVCRGRGRTLKAETVKVKLPRG--IDEGYRIRVAGMGNEGPGG---NGDLYVHIEMEPHPE--LRRE  260 (371)
T ss_pred             cccceecCCCCCCCCCceEEeecceEEEEECCC--CCCCcEEEEecCcCCCCCC---CCCEEEEEEEecCCc--cccc
Confidence                                 124588999999  9999999999999996432   399999999998776  5543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.69  E-value=7.8e-08  Score=85.11  Aligned_cols=75  Identities=24%  Similarity=0.407  Sum_probs=62.6

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|+++.|..-                                                    
T Consensus       117 ~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  196 (380)
T PRK14276        117 RQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCH  196 (380)
T ss_pred             CCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCC
Confidence            4689999999999999999988766421                                                    


Q ss_pred             -------------C-------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 -------------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 -------------d-------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                   .       .+.+.|.||+|  +++|++++++|+|+|...+ ..+|||||+|+|. |..
T Consensus       197 G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G--~~~G~~i~l~G~G~~~~~~-~~~GDL~v~i~v~-~h~  263 (380)
T PRK14276        197 GTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAG--VETGQQIRLQGQGEAGFNG-GPYGDLYVVFRVE-PSK  263 (380)
T ss_pred             CCCccccCCCCCCCCceEEEEEEEEEEEeCCC--ccCCcEEEEeccccCCCCC-CCCcCEEEEEEEE-ECc
Confidence                         0       14689999999  9999999999999998654 4689999999998 443

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.68  E-value=7.9e-08  Score=84.89  Aligned_cols=93  Identities=22%  Similarity=0.359  Sum_probs=70.2

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|.++.|..-                                                    
T Consensus       120 ~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~  199 (372)
T PRK14296        120 TKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCN  199 (372)
T ss_pred             CCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcC
Confidence            3688999999999999999988766421                                                    


Q ss_pred             --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCC------
Q psy4965          50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFN------  103 (179)
Q Consensus        50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l------  103 (179)
                                          ..+.+.|+||+|  +++|++++++|+|++...+ +..|||||+|+|. |...|-      
T Consensus       200 G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~v~v~-~h~~F~R~~G~D  275 (372)
T PRK14296        200 GAGKIIKNKCKNCKGKGKYLERKKIEVNIPKG--IRPNQQIKLSQKGHASLNN-GVNGDLIIDIYLK-ESKVFEIINNND  275 (372)
T ss_pred             CcceeecccccCCCCceEEEEEEEEEEEECCC--CCCCCEEEEeccccCCCCC-CCCccEEEEEEEe-CCCCEEEeCCCc
Confidence                                014689999999  9999999999999987543 4689999999998 543221      


Q ss_pred             --CHHHHHHHHHhcCCC
Q psy4965         104 --NDAKLKELEALLSPR  118 (179)
Q Consensus       104 --~~~~~~~l~~~l~~~  118 (179)
                        ....+.+.+.||-..
T Consensus       276 L~~~~~Isl~eAllG~~  292 (372)
T PRK14296        276 ILMTYNISYLDAILGNE  292 (372)
T ss_pred             EEEEEecCHHHHhCCCE
Confidence              222355566666543

>PRK14279 chaperone protein DnaJ; Provisional

Probab=98.67  E-value=8.4e-08  Score=85.28  Aligned_cols=75  Identities=27%  Similarity=0.487  Sum_probs=62.9

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+++.|||.||+.|.++.|..-                                                    
T Consensus       144 ~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  223 (392)
T PRK14279        144 RRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGS  223 (392)
T ss_pred             CCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeE
Confidence            4688999999999999999998776431                                                    


Q ss_pred             ---------C-------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 ---------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 ---------d-------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                               .       .+.+.|.||+|  +++|++++++|+|++...+ ...|||||+|.|. |..
T Consensus       224 ~i~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~-~h~  286 (392)
T PRK14279        224 IIEDPCEECKGTGVTTRTRTINVRIPPG--VEDGQRIRLAGQGEAGLRG-APSGDLYVTVHVR-PDK  286 (392)
T ss_pred             EeCCcCCCCCCCeEEEEeeeeEEEeCCC--CCCCcEEEEeCCccCCCCC-CCCCCEEEEEEEe-cCC
Confidence                     1       14699999999  9999999999999987653 4679999999997 544

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.67  E-value=9.6e-08  Score=84.51  Aligned_cols=76  Identities=24%  Similarity=0.401  Sum_probs=62.9

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|+++.|..-                                                    
T Consensus       119 ~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  198 (380)
T PRK14297        119 QRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCG  198 (380)
T ss_pred             CCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCC
Confidence            3688999999999999999988766430                                                    


Q ss_pred             --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                          ..+.+.|.||+|  +++|++++++|+|++...+ ...|||||+|.|..++.
T Consensus       199 G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G--~~~G~~I~l~g~G~~~~~~-~~~GDL~v~v~v~~h~~  266 (380)
T PRK14297        199 GSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAG--VDTGNVIPLRGQGEHGKNG-GPTGDLYINIRVAPHKT  266 (380)
T ss_pred             CCceEcCCCCCCCCCCeEEEeEeEEEEEeCCC--CCCCcEEEEecCccCCCCC-CCCccEEEEEEEcCCCC
Confidence                                114689999999  9999999999999986543 46799999999986654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.65  E-value=1.2e-07  Score=83.50  Aligned_cols=75  Identities=31%  Similarity=0.464  Sum_probs=62.7

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL--------D-------------------------------------------   50 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d-------------------------------------------   50 (179)
                      ++|.|+.+.+.|||.||+.|.++.|...        +                                           
T Consensus       113 ~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  192 (371)
T PRK10767        113 RRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGK  192 (371)
T ss_pred             CCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCcee
Confidence            4689999999999999999988776431        1                                           


Q ss_pred             -----------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          51 -----------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        51 -----------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                       .+.+.|.||+|  +++|++++++|+|++...+ ..+|||||.|+|. |..
T Consensus       193 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~-~h~  255 (371)
T PRK10767        193 IIKDPCKKCHGQGRVEKEKTLSVKIPAG--VDTGDRIRLSGEGEAGERG-GPAGDLYVQIHVK-EHP  255 (371)
T ss_pred             ECCCCCCCCCCCceEeeeeeEEEecCCC--CCCCcEEEEecCccCCCCC-CCCcCEEEEEEEe-eCC
Confidence                             14689999999  9999999999999997654 4789999999987 554

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.65  E-value=1.1e-07  Score=84.55  Aligned_cols=74  Identities=22%  Similarity=0.334  Sum_probs=62.0

Q ss_pred             eCCcEEEEeccCHHHHhcCcEEEEecc-----------------------------------------------------
Q psy4965          23 QGINLVTTETITLTEALCGFTKVIKHL-----------------------------------------------------   49 (179)
Q Consensus        23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------------   49 (179)
                      +|.|+.+.+.|||.||+.|+++.|..-                                                     
T Consensus       135 ~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  214 (397)
T PRK14281        135 PGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGE  214 (397)
T ss_pred             CCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcce
Confidence            588999999999999999998776430                                                     


Q ss_pred             ------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 ------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 ------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                        +.+.+.|+||+|  +++|++++++|+|++...+ +..|||||+|.+. |..
T Consensus       215 G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~~~-~h~  279 (397)
T PRK14281        215 GRVVKDRCPACYGEGIKQGEVTVKVTVPAG--VQDGNYLTLRGQGNAGPRG-GAPGDLIVVIEEK-PHE  279 (397)
T ss_pred             eeeeCCCCCCCCCCccEecceEEEEecCCC--CCCCCEEEEecccccCCCC-CCCCcEEEEEEEc-CCC
Confidence                              114689999999  9999999999999997654 4689999999976 654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=98.65  E-value=1.1e-07  Score=83.75  Aligned_cols=75  Identities=21%  Similarity=0.357  Sum_probs=62.8

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL--------D-------------------------------------------   50 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d-------------------------------------------   50 (179)
                      ++|.|+.+.+.|||.||+.|.++.|...        +                                           
T Consensus       123 ~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~  202 (369)
T PRK14282        123 RRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCG  202 (369)
T ss_pred             CCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCC
Confidence            4689999999999999999998876431        1                                           


Q ss_pred             --------------C-------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          51 --------------D-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        51 --------------G-------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                    |       +.+.|.||+|  +.+|++++++|+|++...+ +..|||||+|.|. |..
T Consensus       203 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~i~i~v~-~h~  269 (369)
T PRK14282        203 GTGKIPGEYCHECGGSGRIRRRVRTTVKIPAG--VEDGTVLRITGGGNAGYYG-GPYGDLYVIVRVR-PDP  269 (369)
T ss_pred             CcceeCCCCCCCCCCceeEEEEEEEEEEeCCC--CCCCCEEEEecccCCCCCC-CCCCCEEEEEEEe-cCC
Confidence                          1       4689999999  9999999999999986644 4689999999998 544

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.65  E-value=1.4e-07  Score=82.50  Aligned_cols=76  Identities=22%  Similarity=0.331  Sum_probs=63.6

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc--------C-------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL--------D-------------------------------------------   50 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------d-------------------------------------------   50 (179)
                      ++|.|+.+++.|||.||+.|.++.|..-        +                                           
T Consensus       114 ~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  193 (354)
T TIGR02349       114 RRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCG  193 (354)
T ss_pred             CCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCC
Confidence            4688999999999999999988776431        1                                           


Q ss_pred             ---------------------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          51 ---------------------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        51 ---------------------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                           .+.+.|+||+|  +++|++++++|+|++...+ ...|||||+|+|..+..
T Consensus       194 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~v~i~v~~h~~  261 (354)
T TIGR02349       194 GEGKIIKEPCSTCKGKGRVKERKTITVKIPAG--VDTGQRLRVSGKGNAGENG-GPNGDLYVVIRVKPHKI  261 (354)
T ss_pred             CcceecCCCCCCCCCCcEecccceEEEEECCC--CCCCCEEEEecCccCCCCC-CCCCCEEEEEEEecCcc
Confidence                                 14699999999  9999999999999986543 46799999999996654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.3e-07  Score=83.34  Aligned_cols=92  Identities=28%  Similarity=0.422  Sum_probs=72.2

Q ss_pred             eeeCCcEEEEeccCHHHHhcCcEEEEe--cc-------------------------------------------------
Q psy4965          21 QRQGINLVTTETITLTEALCGFTKVIK--HL-------------------------------------------------   49 (179)
Q Consensus        21 ~R~g~DL~~~~~Isl~eAl~G~~~~i~--~l-------------------------------------------------   49 (179)
                      .|+|.||.+.++|||.||+.|.++.|.  +.                                                 
T Consensus       112 ~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G  191 (371)
T COG0484         112 PRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNG  191 (371)
T ss_pred             cccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCcc
Confidence            568999999999999999999987764  21                                                 


Q ss_pred             -------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCCC-------
Q psy4965          50 -------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFN-------  103 (179)
Q Consensus        50 -------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~l-------  103 (179)
                                         ..+.|.|+||+|  +..|+.++++|+|-+...+ +..|||||.|.|+ |...|.       
T Consensus       192 ~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaG--v~~g~~ir~~g~G~~g~~G-gp~GDLyv~i~v~-~h~~F~R~g~dL~  267 (371)
T COG0484         192 TGKIIKDPCGKCKGKGRVKKKKSISVNIPAG--VDDGDRIRLSGEGEAGPNG-GPAGDLYVFVHVK-PHPIFERDGDDLY  267 (371)
T ss_pred             ceeECCCCCCCCCCCCeEeeeeEEEEECCCC--CccCCEEEEecCcccCCCC-CCCccEEEEEEee-cCCCeEECCCceE
Confidence                               125799999999  9999999999999998754 5789999999998 554331       


Q ss_pred             CHHHHHHHHHhcC
Q psy4965         104 NDAKLKELEALLS  116 (179)
Q Consensus       104 ~~~~~~~l~~~l~  116 (179)
                      .+.-+..+..+|-
T Consensus       268 ~~~~Is~~~AalG  280 (371)
T COG0484         268 CEVPISFTEAALG  280 (371)
T ss_pred             eccccCHHHHhcC
Confidence            2233445555654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.63  E-value=1.7e-07  Score=82.59  Aligned_cols=77  Identities=26%  Similarity=0.432  Sum_probs=63.6

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|.++.|...                                                    
T Consensus       115 ~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~  194 (366)
T PRK14294        115 RAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGK  194 (366)
T ss_pred             CCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCe
Confidence            3688999999999999999998776431                                                    


Q ss_pred             ---------C-------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCC
Q psy4965          50 ---------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYF  102 (179)
Q Consensus        50 ---------d-------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~  102 (179)
                               .       .+.+.|.||+|  +++|++++++|+|.+...+ +..|||||+|.|. |...|
T Consensus       195 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~v~i~v~-~h~~F  259 (366)
T PRK14294        195 VIVSPCKTCHGQGRVRVSKTVQVKIPAG--VDTGSRLRLRGEGEAGVRG-GPPGDLYVFLTVE-PHEFF  259 (366)
T ss_pred             ecCcCCCCCCCceEeecceeEEEecCCC--CcCCcEEEEccCccCCCCC-CCCCcEEEEEEEc-cCCcc
Confidence                     0       14689999999  9999999999999986543 4689999999998 65533

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.53  E-value=4.2e-07  Score=80.74  Aligned_cols=75  Identities=27%  Similarity=0.356  Sum_probs=62.6

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|+++.|..-                                                    
T Consensus       129 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~  208 (391)
T PRK14284        129 RQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGR  208 (391)
T ss_pred             CCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCc
Confidence            4688999999999999999998766431                                                    


Q ss_pred             ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                      ..+.|.|.||+|  ++.|++++++|+|-....+ +..|||||+|+|. |..
T Consensus       209 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~-~h~  271 (391)
T PRK14284        209 VITDPCSVCRGQGRIKDKRSVHVHIPAG--VDSGMRLKMEGYGDAGQNG-APAGDLYVFIDVE-PHP  271 (391)
T ss_pred             ccCCcCCCCCCcceecceEEEEEEECCC--CCCCCEEEEeccccCCCCC-CCCCCEEEEEEEe-cCC
Confidence                            115789999999  9999999999999876643 4679999999998 554

>PRK14278 chaperone protein DnaJ; Provisional

Probab=98.52  E-value=4e-07  Score=80.57  Aligned_cols=75  Identities=21%  Similarity=0.298  Sum_probs=62.1

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|.++.|..-                                                    
T Consensus       110 ~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  189 (378)
T PRK14278        110 RPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCR  189 (378)
T ss_pred             CCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCC
Confidence            4689999999999999999988766421                                                    


Q ss_pred             --------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 --------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 --------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                          ..+.+.|.||||  +++|+.++++|+|.+...+ +..|||||+|+|. |..
T Consensus       190 G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~~~-~h~  256 (378)
T PRK14278        190 GVGEVIPDPCHECAGDGRVRARREITVKIPAG--VGDGMRIRLAAQGEVGPGG-GPAGDLYVEVHEQ-PHD  256 (378)
T ss_pred             ccceeeCCCCCCCCCceeEecceEEEEEECCC--CCCCcEEEEccCcCCCCCC-CCCCCEEEEEEEC-cCC
Confidence                                014689999999  9999999999999987653 4579999999987 654

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.51  E-value=6e-07  Score=79.22  Aligned_cols=93  Identities=22%  Similarity=0.231  Sum_probs=70.7

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc--------CC------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL--------DD------------------------------------------   51 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l--------dG------------------------------------------   51 (179)
                      ++|.|+.+.+.|||.||+.|.++.|..-        +|                                          
T Consensus       111 ~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  190 (369)
T PRK14288        111 SIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI  190 (369)
T ss_pred             CCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceE
Confidence            4689999999999999999988766431        11                                          


Q ss_pred             -----------------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC------CCCCHHHH
Q psy4965          52 -----------------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES------YFNNDAKL  108 (179)
Q Consensus        52 -----------------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~------~~l~~~~~  108 (179)
                                       +.+.|.||+|  +++|+.++++|+|.+...  +..|||||+|.|.-+..      +......+
T Consensus       191 ~~~~C~~C~G~g~v~~~~~l~V~IP~G--~~~G~~i~l~g~G~~~~~--~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I  266 (369)
T PRK14288        191 IKTPCQACKGKTYILKDEEIDAIIPEG--IDDQNRMVLKNKGNEYEK--GKRGDLYLEARVKEDEHFKREGCDLFIEAPV  266 (369)
T ss_pred             ccccCccCCCcceEEEEEEEEEecCCC--CCCCCEEEEccCccCCCC--CCCCCEEEEEEEEECCCcEEeCCEEEEEEec
Confidence                             4689999999  999999999999998654  46899999999985543      11223335


Q ss_pred             HHHHHhcCCC
Q psy4965         109 KELEALLSPR  118 (179)
Q Consensus       109 ~~l~~~l~~~  118 (179)
                      .+.+.||-..
T Consensus       267 sl~eAllG~~  276 (369)
T PRK14288        267 FFTTIALGHT  276 (369)
T ss_pred             CHHHHhcCCE
Confidence            5566666543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.50  E-value=4.8e-07  Score=80.13  Aligned_cols=74  Identities=26%  Similarity=0.380  Sum_probs=61.2

Q ss_pred             eCCcEEEEeccCHHHHhcCcEEEEecc--------CC-------------------------------------------
Q psy4965          23 QGINLVTTETITLTEALCGFTKVIKHL--------DD-------------------------------------------   51 (179)
Q Consensus        23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l--------dG-------------------------------------------   51 (179)
                      +|.|+.+.+.|||.||+.|.++.|...        +|                                           
T Consensus       128 ~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  207 (382)
T PRK14291        128 KGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL  207 (382)
T ss_pred             CCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence            689999999999999999998776431        11                                           


Q ss_pred             ----------------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          52 ----------------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        52 ----------------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                      +.+.|.||+|  +..|++++++|+|-....+ +..|||||+|++. |..
T Consensus       208 ~~~C~~C~G~g~v~~~~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~g-~~~GDL~v~i~~~-~h~  268 (382)
T PRK14291        208 REPCSKCNGRGLVIKKETIKVRIPPG--VDNGSKLRVPGKGHAGRFG-GPPGDLYIIVKVK-PHP  268 (382)
T ss_pred             ccCCCCCCCCceEEeeeEEEEEeCCC--CCCCCEEEEecCcCCCCCC-CCCccEEEEEEEc-cCC
Confidence                            4689999999  9999999999999865433 4689999999987 544

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.49  E-value=5e-07  Score=79.79  Aligned_cols=75  Identities=28%  Similarity=0.436  Sum_probs=61.9

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc----------------------------------------------------
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL----------------------------------------------------   49 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l----------------------------------------------------   49 (179)
                      ++|.|+.+.+.|||.||+.|+++.|...                                                    
T Consensus       116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  195 (372)
T PRK14300        116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQ  195 (372)
T ss_pred             CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccce
Confidence            4688999999999999999988766421                                                    


Q ss_pred             ----------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 ----------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 ----------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                      +.+.+.|+||+|  +++|++++++|+|.+...+ ...|||||+|.|. |..
T Consensus       196 ~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~-~h~  258 (372)
T PRK14300        196 IIKNPCKKCHGMGRYHKQRNLSVNIPAG--VENGTRIRHTGEGEAGIRG-GNSGDLYVDIAIK-PHD  258 (372)
T ss_pred             EeCCCCCCCCCceEEEeeEEEEEEECCC--CCCCcEEEEeccccCCCCC-CCCCCEEEEEEEC-CCC
Confidence                            114678999999  9999999999999986543 4679999999986 654

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.30  E-value=3.1e-06  Score=76.02  Aligned_cols=44  Identities=14%  Similarity=0.168  Sum_probs=37.7

Q ss_pred             cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          52 RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        52 r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                      +.+.|.||+|  +..|+.++++|+|-...+  +..|||||.|.++ |..
T Consensus       224 ~~l~V~Ip~G--~~dG~~I~~~G~Gd~~~~--~~pGDLiv~I~~~-ph~  267 (421)
T PTZ00037        224 KILEVNIDKG--VPNQHKITFHGEADEKPN--EIPGNVVFILNEK-PHD  267 (421)
T ss_pred             eEEEEeeCCC--CCCCcEEEEecccCCCCC--CCCCcEEEEEEec-CCC
Confidence            4689999999  999999999999987654  4689999999886 654

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.29  E-value=3e-06  Score=74.69  Aligned_cols=72  Identities=24%  Similarity=0.367  Sum_probs=58.7

Q ss_pred             eCCcEEEEeccCHHHHhcCcEEEEecc-----------------------------------------------------
Q psy4965          23 QGINLVTTETITLTEALCGFTKVIKHL-----------------------------------------------------   49 (179)
Q Consensus        23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------------------------------------------------   49 (179)
                      ++.|+.+.+.|||.||+.|+++.|..-                                                     
T Consensus       121 ~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~  200 (365)
T PRK14290        121 IDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGR  200 (365)
T ss_pred             CCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCc
Confidence            478999999999999999988766431                                                     


Q ss_pred             ------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCC
Q psy4965          50 ------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES  100 (179)
Q Consensus        50 ------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~  100 (179)
                                        .-+.+.|.||+|  +..|+.++++|+|-. .  .+..|||||.|+|. |..
T Consensus       201 G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~-~--~~~~GDL~v~v~v~-~h~  263 (365)
T PRK14290        201 GRIPEEKCPRCNGTGTVVVNEDISVKIPKG--ATDNLRLRVKGKGQS-Y--GGRTGDLYVVLRVN-NDP  263 (365)
T ss_pred             eeEccCCCCCCCCceeEEEeeEEEEEECCC--CCCCcEEEEccccCC-C--CCCCCCEEEEEEEc-CCC
Confidence                              013589999999  999999999999964 2  25789999999987 443

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=98.19  E-value=9e-06  Score=77.14  Aligned_cols=95  Identities=22%  Similarity=0.203  Sum_probs=71.0

Q ss_pred             CCCCeeeCCcEEEEeccCHHHHhcCcEEEEec----c--CC-------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCC
Q psy4965          17 HDRFQRQGINLVTTETITLTEALCGFTKVIKH----L--DD-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNP   83 (179)
Q Consensus        17 h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~----l--dG-------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~   83 (179)
                      .+.|--..-||.+.+.|+|.+++.|+++.|+.    +  +|       +.|.|+||+|  ++.|++++++|+|-...+  
T Consensus       649 ~~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpG--VkdGqkIRf~GeGDegpg--  724 (871)
T TIGR03835       649 EPNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPIT--SQLNISAIFKGFGHDFGN--  724 (871)
T ss_pred             CCCccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCC--CCCCCEEEeccccCCCCC--
Confidence            35566667899999999999999999988742    2  22       3699999999  999999999999987533  


Q ss_pred             CCCCCeEEEEEEeCCCCCC-------CCHHHHHHHHHhcCC
Q psy4965          84 YEKGTLYIKFDVQFPESYF-------NNDAKLKELEALLSP  117 (179)
Q Consensus        84 ~~~GdL~I~f~V~fP~~~~-------l~~~~~~~l~~~l~~  117 (179)
                       ..|||||.|.+. |...|       .....+.+.+.++..
T Consensus       725 -g~GDLyVvIkVK-PHp~FrRdGdDL~~~v~ISL~EALLGg  763 (871)
T TIGR03835       725 -GCGDLKVVFKVI-PSNFFQIKNDGLHVAALVDPLVAYNGG  763 (871)
T ss_pred             -CCCCEEEEEEEc-CCCCeEEECCeEEEEEecCHHHHhcCC
Confidence             349999999987 54433       122234556666654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0714|consensus

Probab=97.87  E-value=3.4e-05  Score=63.71  Aligned_cols=76  Identities=36%  Similarity=0.587  Sum_probs=67.6

Q ss_pred             CCCccEEEEEEEecCCCCeeeCCcEEEE--eccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCC
Q psy4965           3 QEPGDVIIVLEQKPHDRFQRQGINLVTT--ETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI   79 (179)
Q Consensus         3 ~~~GDliv~i~~k~h~~F~R~g~DL~~~--~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~   79 (179)
                      ..|-++++++..++|..|.|.+.+|.+.  ..|++.+|++|+...+.+++++.+.+.+.. .++.++...+++++|||.
T Consensus       228 ~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  305 (306)
T KOG0714|consen  228 ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINK-DLIEPGEEDVIPGEGLPC  305 (306)
T ss_pred             cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccc-cccCCCceeeecCCCCCC
Confidence            4678999999999999999999999999  999999999999999999999865554432 679999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
2q2g_A	180	Crystal Structure Of Dimerization Domain Of Hsp40 F		2e-15
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		3e-15
3agz_A	190	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		1e-14
3agx_A	181	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		2e-14
2qld_A	183	Human Hsp40 Hdj1 Length = 183		2e-14
1xao_A	121	Hsp40-Ydj1 Dimerization Domain Length = 121		7e-12
1c3g_A	170	S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1		9e-12
2b26_A	173	The Crystal Structure Of The Protein Complex Of Yea		9e-12

>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P   PGD++++++ K H RF R   +L+   TI L  AL GFT  +  LD+R L I  P 
Sbjct: 69  PGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQI--PI 126
Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 108
            E++ P+  K +  EG PI   P +KG L ++FD+ FP+S      KL
Sbjct: 127 KEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKL 174

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD  PGDV+ ++ ++PH  F+R G +LV    I L  A+ G    ++H+    L +   P
Sbjct: 138 PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVP 197
Query: 61  GEVIKPEDIKGIVGEGMPIYK-NPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
           GEVI P   K I G+GMPI K   Y  G L IKF ++ PE++F ++  LK+LE
Sbjct: 198 GEVIAPGMRKVIEGKGMPIPKYGGY--GNLIIKFTIKDPENHFTSEENLKKLE 248

>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
           P D++ VL+ KPH+ F+R G +++    I+L EALCG T  +  LD R + +     +VI
Sbjct: 82  PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF--KDVI 139
Query: 65  KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
           +P   + + GEG+P+ K P ++G L I+F+V FPE
Sbjct: 140 RPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPE 174

>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
           P D++ VL+ KPH+ F+R G +++    I+L EALCG T  +  LD R + +     +VI
Sbjct: 73  PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF--KDVI 130
Query: 65  KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
           +P   + + GEG+P+ K P ++G L I+F+V FPE
Sbjct: 131 RPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPE 165

>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 5   PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
           P D++ VL+ KPH+ F+R G +++    I+L EALCG T  +  LD R + +     +VI
Sbjct: 75  PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF--KDVI 132
Query: 65  KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
           +P   + + GEG+P+ K P ++G L I+F+V FPE
Sbjct: 133 RPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPE 167

>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain Length = 121

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 20  FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79
           F+R G +LV    I L  A+ G    ++H+    L +   PGEVI P   K I G+GMPI
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 80  YK-NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR 118
            K   Y  G L IKF ++FPE++F ++  LK+LE +L PR
Sbjct: 62  PKYGGY--GNLIIKFTIKFPENHFTSEENLKKLEEILPPR 99

>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 10  IVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI 69
            V+++K H  F+R G +L+ T  ++  E+L GF+K I+ +D R L ++    + ++P   
Sbjct: 72  FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV--QPVQPSQT 129
Query: 70  KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
               G+GMP  KNP ++G L +K+ V +P S   NDA+ + ++
Sbjct: 130 STYPGQGMPTPKNPSQRGNLIVKYKVDYPISL--NDAQKRAID 170

>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 10  IVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI 69
            V+++K H  F+R G +L+ T  ++  E+L GF+K I+ +D R L ++    + ++P   
Sbjct: 72  FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV--QPVQPSQT 129
Query: 70  KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
               G+GMP  KNP ++G L +K+ V +P S   NDA+ + ++
Sbjct: 130 STYPGQGMPTPKNPSQRGNLIVKYKVDYPISL--NDAQKRAID 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	4e-50
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	6e-50
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	6e-49
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	2e-48
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	2e-43
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-09

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score =  156 bits (397), Expect = 4e-50
 Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 20  FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79
           F+R G +LV    I L  A+ G    ++H+    L +   PGEVI P   K I G+GMPI
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 80  YKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREY 139
            K     G L IKF ++FPE++F ++  LK+LE +L PR       P    V+E  L ++
Sbjct: 62  PKYG-GYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVP--AIPKKATVDECVLADF 118

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score =  158 bits (401), Expect = 6e-50
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
            +  P D++ VL+ KPH+ F+R G +++    I+L EALCG T  +  LD R + +    
Sbjct: 69  SNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPV--VF 126

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALL 115
            +VI+P   + + GEG+P+ K P ++G L I+F+V FPE           LE +L
Sbjct: 127 KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPER--IPQTSRTVLEQVL 179

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  157 bits (400), Expect = 6e-49
 Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 1/112 (0%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           PD  PGDV+ ++ ++PH  F+R G +LV    I L  A+ G    ++H+    L +   P
Sbjct: 138 PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVP 197

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
           GEVI P   K I G+GMPI K     G L IKF ++ PE++F ++  LK+LE
Sbjct: 198 GEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEENLKKLE 248

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  154 bits (392), Expect = 2e-48
 Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 1   PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
           P   PGD++++++ K H RF R   +L+   TI L  AL GFT  +  LD+R L I  P 
Sbjct: 69  PGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQI--PI 126

Query: 61  GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALL 115
            E++ P+  K +  EGMPI   P +KG L ++FD+ FP+S      + K ++  L
Sbjct: 127 KEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKS--LTPEQKKLIKEAL 179

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  141 bits (357), Expect = 2e-43
 Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 4/109 (3%)

Query: 4   EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEV 63
               +  V+++K H  F+R G +L+ T  ++  E+L GF+K I+ +D R L ++    + 
Sbjct: 66  RRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV--QP 123

Query: 64  IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
           ++P       G+GMP  KNP ++G L +K+ V +P S   NDA+ + ++
Sbjct: 124 VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISL--NDAQKRAID 170

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 4   EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP--- 60
             GD+ +V+   PH  F   G NL     +   EA  G    +  L +  +L+T PP   
Sbjct: 211 PNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQ 269

Query: 61  -GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKEL-EALLSPR 118
            G+ ++   IK   G+G+    +    G L+    +  P      D K +EL + L +  
Sbjct: 270 AGQRLR---IK---GKGLV---SKTHTGDLFAVIKIVMPT---KPDEKARELWQQLAAAE 317

Query: 119 PSVD 122
            S D
Sbjct: 318 ASFD 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.96
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.96
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	99.05
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	99.05
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.99
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.95
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.79

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.4e-34  Score=230.09  Aligned_cols=112  Identities=37%  Similarity=0.632  Sum_probs=106.2

Q ss_pred             CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      ||+.+|||||+|++++|+.|+|+|+||++++.|||++|+||+++.|+||||+.+.|++|++  +++|++++|+|+|||..
T Consensus        69 ~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~--t~~g~~~rl~g~Gmp~~  146 (180)
T 2q2g_A           69 PGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEI--VNPKTRKIVPNEGMPIK  146 (180)
T ss_dssp             TTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSC--CCTTCEEEETTCSCBCS
T ss_pred             CCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCc--cCCCEEEEECCcCCCcC
Confidence            5778999999999999999999999999999999999999999999999999899999998  99999999999999987


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS  116 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~  116 (179)
                      ++++.+|||||+|+|.||++  ||++|+++|+++||
T Consensus       147 ~~~~~~GDL~V~~~V~~P~~--Ls~~q~~~l~~~~p  180 (180)
T 2q2g_A          147 NQPGQKGDLILEFDICFPKS--LTPEQKKLIKEALD  180 (180)
T ss_dssp             SSTTCBCCEEEEEEEECCSC--CCHHHHHHHHHHC-
T ss_pred             CCCCCcCCEEEEEEEECCCC--CCHHHHHHHHHhcC
Confidence            66567899999999999998  99999999999985

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=3.4e-34  Score=228.06  Aligned_cols=113  Identities=35%  Similarity=0.650  Sum_probs=107.0

Q ss_pred             CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      ||+.+|||||+|++++|+.|+|+|+||++++.|||++|++|+++.|+||||+.+.|++|++  +++|++++|+|+|||..
T Consensus        69 ~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~--t~~g~~~rl~g~Gmp~~  146 (181)
T 3agx_A           69 SNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV--IRPGMRRKVPGEGLPLP  146 (181)
T ss_dssp             SSSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSC--CCTTCEEEETTCSCBCS
T ss_pred             CCCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCc--cCCCcEEEECCcCCCcC
Confidence            4678999999999999999999999999999999999999999999999999899999988  99999999999999987


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      ++++.+|||||+|+|.||++  ||++|+++|+++||.
T Consensus       147 ~~~~~~GDL~V~~~V~~P~~--ls~~q~~~l~~~~~~  181 (181)
T 3agx_A          147 KTPEKRGDLIIEFEVIFPER--IPQTSRTVLEQVLPI  181 (181)
T ss_dssp             SSTTSBCCEEEEEEEECCSC--CCHHHHHHHHHHSCC
T ss_pred             CCCCCcCCEEEEEEEECCCC--CCHHHHHHHHHhccC
Confidence            65567899999999999998  999999999999963

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=3.2e-34  Score=238.25  Aligned_cols=111  Identities=41%  Similarity=0.653  Sum_probs=94.0

Q ss_pred             CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      ||+.||||||+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+.+.|++|+|+|+++|++++|+|+|||..
T Consensus       138 ~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~  217 (248)
T 1nlt_A          138 PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIP  217 (248)
T ss_dssp             TTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCS
T ss_pred             CCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccC
Confidence            46789999999999999999999999999999999999999999999999998999999999999999999999999987


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHHH
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKELE  112 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~  112 (179)
                      +++ .+|||||+|+|.||+++|||++|+++|+
T Consensus       218 ~~~-~~GDL~V~~~V~~P~~~~Ls~~q~~~l~  248 (248)
T 1nlt_A          218 KYG-GYGNLIIKFTIKDPENHFTSEENLKKLE  248 (248)
T ss_dssp             SSC-SBCCEEEEEEEECCC-------------
T ss_pred             CCC-CcCCEEEEEEEECCCCCCCCHHHHHhhC
Confidence            654 6899999999999999999999988874

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=209.53  Aligned_cols=120  Identities=38%  Similarity=0.570  Sum_probs=104.5

Q ss_pred             CCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCC
Q psy4965          19 RFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP   98 (179)
Q Consensus        19 ~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP   98 (179)
                      .|+|+|+||++++.|+|.+||||+++.|+||||+.+.|++|+|+|+++|++++|+|+|||..+++ .+|||||+|+|.||
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P   79 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP   79 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence            49999999999999999999999999999999999999999999999999999999999987764 78999999999999


Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeecCc
Q psy4965          99 ESYFNNDAKLKELEALLSPRPSVDMPPPHSEHVEEVELREYIA  141 (179)
Q Consensus        99 ~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (179)
                      +++||+++++++|+++++.+... . ...+.++|+|.+.+|++
T Consensus        80 ~~~~ls~~q~~~l~~l~~~~~~~-~-~~~~~~~ee~~~~~~~~  120 (121)
T 1xao_A           80 ENHFTSEENLKKLEEILPPRIVP-A-IPKKATVDECVLADFDP  120 (121)
T ss_dssp             CTTCSCHHHHHHHHHHSCCCCCC-C-CCTTSCEEEEECEECCC
T ss_pred             CCCCCCHHHHHHHHHHccccccc-C-CCCCCCceEEEeeccCC
Confidence            99999999999999999876420 0 23357889999999886

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=3.4e-33  Score=220.24  Aligned_cols=107  Identities=32%  Similarity=0.606  Sum_probs=101.2

Q ss_pred             CCCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCC
Q psy4965           1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY   80 (179)
Q Consensus         1 pg~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~   80 (179)
                      ||+.+|||||+|++++|+.|+|+|+||++++.|||++|+||+++.|+||||+.+.|++|++  +++|++++|+|+|||..
T Consensus        63 ~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~~i~i~~~--t~~g~~~rl~g~G~p~~  140 (170)
T 1c3g_A           63 QTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTP  140 (170)
T ss_dssp             SSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCS
T ss_pred             CCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCCeEEeeCCCCCEEEEECCCc--cCCCcEEEEeCCCCCcC
Confidence            4678999999999999999999999999999999999999999999999999899999998  99999999999999987


Q ss_pred             CCCCCCCCeEEEEEEeCCCCCCCCHHHHHHH
Q psy4965          81 KNPYEKGTLYIKFDVQFPESYFNNDAKLKEL  111 (179)
Q Consensus        81 ~~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l  111 (179)
                      ++++.+|||||+|+|.||++  ||++|+++|
T Consensus       141 ~~~~~~GDL~V~~~V~~P~~--Ls~~q~~~l  169 (170)
T 1c3g_A          141 KNPSQRGNLIVKYKVDYPIS--LNDAQKRAI  169 (170)
T ss_dssp             SCTTSBCCEEEEECCBCCSS--CCTTHHHHT
T ss_pred             CCCCCCCCEEEEEEEECCCC--CCHHHHHhh
Confidence            66567899999999999998  999998776

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.96  E-value=4.9e-30  Score=220.86  Aligned_cols=107  Identities=23%  Similarity=0.372  Sum_probs=101.7

Q ss_pred             CCCCccEEEEEEEecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCC
Q psy4965           2 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYK   81 (179)
Q Consensus         2 g~~~GDliv~i~~k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~   81 (179)
                      |+.+|||||+|++++|+.|+|+|+||++++.|+|++||||+++.|+||||+ +.|+||+|  +++|++++|+|+|||.. 
T Consensus       209 gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g--t~~g~~~rl~G~GmP~~-  284 (329)
T 3lz8_A          209 GGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVSK-  284 (329)
T ss_dssp             -CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBCS-
T ss_pred             CCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC--CCCCCEEEEcCCCCCCC-
Confidence            467999999999999999999999999999999999999999999999998 79999999  99999999999999976 


Q ss_pred             CCCCCCCeEEEEEEeCCCCCCCCHHHHHHHHHhcC
Q psy4965          82 NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLS  116 (179)
Q Consensus        82 ~~~~~GdL~I~f~V~fP~~~~l~~~~~~~l~~~l~  116 (179)
                        ..+|||||+|+|.||++  |+++|+++|+++..
T Consensus       285 --~~rGDL~v~~~V~~P~~--l~~~q~~~l~~~~~  315 (329)
T 3lz8_A          285 --THTGDLFAVIKIVMPTK--PDEKARELWQQLAA  315 (329)
T ss_dssp             --SCBCCEEEEEEECCCSS--CCHHHHHHHHHHHH
T ss_pred             --CCCCCEEEEEEEECCCC--CCHHHHHHHHHHHh
Confidence              36999999999999999  99999999999876

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.96  E-value=4.7e-29  Score=183.74  Aligned_cols=95  Identities=23%  Similarity=0.368  Sum_probs=88.8

Q ss_pred             ecCCCCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEE
Q psy4965          15 KPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD   94 (179)
Q Consensus        15 k~h~~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~   94 (179)
                      ++|+.|+|+|+||++++.|||.+|++|+++.|+||||+ +.|+||+|  +++|++++|+|+|||. .+  .+|||||+|+
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g--~~~G~~~rl~G~G~p~-~~--~~GDL~v~~~   75 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQRLRIKGKGLVS-KT--HTGDLFAVIK   75 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCEEEETTCSCBC-SS--CBCCEEEEEE
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCC--cCcCeEEEECCccCCC-CC--CCcCEEEEEE
Confidence            79999999999999999999999999999999999996 99999999  9999999999999998 32  7999999999


Q ss_pred             EeCCCCCCCCHHHHHHHHHhcCC
Q psy4965          95 VQFPESYFNNDAKLKELEALLSP  117 (179)
Q Consensus        95 V~fP~~~~l~~~~~~~l~~~l~~  117 (179)
                      |.||++  |+++|+++|++++..
T Consensus        76 V~~P~~--Ls~~q~~~l~~l~~~   96 (109)
T 3i38_A           76 IVMPTK--PDEKARELWQQLAAA   96 (109)
T ss_dssp             ECCCSS--CCHHHHHHHHHHHHH
T ss_pred             EECCCC--CCHHHHHHHHHHHhh
Confidence            999999  999999999999864

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=99.05  E-value=4.6e-10  Score=87.81  Aligned_cols=72  Identities=17%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             CcEEEEeccCHHHHhcCcEEEEecc----CC----cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEe
Q psy4965          25 INLVTTETITLTEALCGFTKVIKHL----DD----RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ   96 (179)
Q Consensus        25 ~DL~~~~~Isl~eAl~G~~~~i~~l----dG----r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~   96 (179)
                      .|+.+++.|||.||+.|+++.|..-    .|    +.+.|+||+|  ++.|+.++++|+|-+...+ +..|||||.|++.
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~   77 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG--WKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK   77 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT--CCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCC--ccCCCEEEEeccccCCCCC-CccccEEEEEEEc
Confidence            3899999999999999999887632    23    7899999999  9999999999999876543 5789999999997


Q ss_pred             CCCC
Q psy4965          97 FPES  100 (179)
Q Consensus        97 fP~~  100 (179)
                       |..
T Consensus        78 -~h~   80 (170)
T 1c3g_A           78 -SHP   80 (170)
T ss_dssp             -CCS
T ss_pred             -cCC
Confidence             554

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=99.05  E-value=4.6e-10  Score=88.58  Aligned_cols=76  Identities=21%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             eCCcEEEEeccCHHHHhcCcEEEEecc-----------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEE
Q psy4965          23 QGINLVTTETITLTEALCGFTKVIKHL-----------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYI   91 (179)
Q Consensus        23 ~g~DL~~~~~Isl~eAl~G~~~~i~~l-----------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I   91 (179)
                      +|.|+.+++.|||.||+.|+++.|..-           ..+.+.|+||+|  ++.|+.++++|+|-+...+ +..|||||
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~g~~g-g~~GDl~v   78 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPG--WKDGTKLTYSGEGDQESPG-TSPGDLVL   78 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTT--CCTTCEEEETTCSCCSSTT-SCCCEEEE
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCC--CcCCcEEEEeeccCCCCCC-CccccEEE
Confidence            378999999999999999999877632           246799999999  9999999999999883333 57899999


Q ss_pred             EEEEeCCCCCC
Q psy4965          92 KFDVQFPESYF  102 (179)
Q Consensus        92 ~f~V~fP~~~~  102 (179)
                      .|++. |...|
T Consensus        79 ~i~~~-~h~~F   88 (180)
T 2q2g_A           79 IIQTK-THPRF   88 (180)
T ss_dssp             EEEEC-CCSSC
T ss_pred             EEEEE-ecccE
Confidence            99997 65433

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.99  E-value=4.9e-10  Score=96.14  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=61.8

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEecc------C-------CcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCC
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHL------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGT   88 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~l------d-------Gr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~Gd   88 (179)
                      ++|.||.+++.|+|.||+.|+++.|..-      .       .+.+.|+||+|  +++|++++++|+|.|...+ +..||
T Consensus       138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~G--v~~G~~Irl~G~G~~g~~g-g~~GD  214 (329)
T 3lz8_A          138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAG--VVDGQRIRLKGQGTPGENG-GPNGD  214 (329)
T ss_dssp             CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTT--CCTTCEEEESSCSCCC----CCCCC
T ss_pred             CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCC--CCCCCEEEEcccccCCCCC-CCCCc
Confidence            5789999999999999999988766521      2       35789999999  9999999999999997643 47899


Q ss_pred             eEEEEEEeCCCC
Q psy4965          89 LYIKFDVQFPES  100 (179)
Q Consensus        89 L~I~f~V~fP~~  100 (179)
                      |||.|+|. |..
T Consensus       215 L~v~I~v~-~h~  225 (329)
T 3lz8_A          215 LWLVIHIA-PHP  225 (329)
T ss_dssp             EEEEECCC-CCS
T ss_pred             EEEEEEEe-cCC
Confidence            99999987 544

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.95  E-value=2.1e-09  Score=84.81  Aligned_cols=73  Identities=19%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             CCcEEEEeccCHHHHhcCcEEEEec------cCC-------cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeE
Q psy4965          24 GINLVTTETITLTEALCGFTKVIKH------LDD-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY   90 (179)
Q Consensus        24 g~DL~~~~~Isl~eAl~G~~~~i~~------ldG-------r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~   90 (179)
                      +.|+.+++.|||.||+.|+++.|..      -.|       +.+.|+||+|  ++.|+.++++|+|-+..+  +..||||
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G--~~~G~~ir~~G~G~~~~~--g~~GDl~   77 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKG--WKEGTKITFPKEGDQTSN--NIPADIV   77 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTT--CCTTCEEEETTCSCCCSS--SCCCCEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCC--ccCCcEEEEeeccccCCC--CCcccEE
Confidence            5689999999999999999877652      234       6799999999  999999999999998764  4789999


Q ss_pred             EEEEEeCCCCC
Q psy4965          91 IKFDVQFPESY  101 (179)
Q Consensus        91 I~f~V~fP~~~  101 (179)
                      |.|++. |...
T Consensus        78 v~i~~~-~h~~   87 (181)
T 3agx_A           78 FVLKDK-PHNI   87 (181)
T ss_dssp             EEEEEC-CCSS
T ss_pred             EEEEEe-cccc
Confidence            999997 5543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.79  E-value=1.3e-08  Score=84.01  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             eeeCCcEEEEeccCHHHHhcCcEEEEecc---------------------------------------------------
Q psy4965          21 QRQGINLVTTETITLTEALCGFTKVIKHL---------------------------------------------------   49 (179)
Q Consensus        21 ~R~g~DL~~~~~Isl~eAl~G~~~~i~~l---------------------------------------------------   49 (179)
                      .++|.|+.+++.|||.||+.|.++.|..-                                                   
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~   87 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCH   87 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCS
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCC
Confidence            35799999999999999999988766411                                                   


Q ss_pred             ----------------------CCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCCCCCC
Q psy4965          50 ----------------------DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYF  102 (179)
Q Consensus        50 ----------------------dGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP~~~~  102 (179)
                                            ..+.|.|+||+|  ++.|+.++++|+|-+..+  +..|||||.|+|. |...|
T Consensus        88 G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~~~~--g~~GDl~v~i~v~-~h~~F  157 (248)
T 1nlt_A           88 GTGDIIDPKDRCKSCNGKKVENERKILEVHVEPG--MKDGQRIVFKGEADQAPD--VIPGDVVFIVSER-PHKSF  157 (248)
T ss_dssp             SSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTT--CCTTCEEEETTCSCCCTT--CBCCCEEEEEEEC-CCSSC
T ss_pred             CcCEEeccCCCCcccCCCceEeeeEEEEEEECCC--ccCCCEEEEeeeecCCCC--CCcceEEEEEEEe-cCccc
Confidence                                  015789999999  999999999999998654  4789999999987 65533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	1e-21
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	1e-19

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.9 bits (202), Expect = 1e-21
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 20 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79
          F+R G +LV    I L  A+ G    ++H+    L +   PGEVI P   K I G+GMPI
Sbjct: 2  FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 80 YKNPYEKGTLYIKFDVQFPE 99
           K     G L IKF ++ PE
Sbjct: 62 PKYG-GYGNLIIKFTIKDPE 80

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.5 bits (188), Expect = 1e-19
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 20  FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79
           F+R G +L+ T  ++  E+L GF+K I+ +D R L ++      ++P       G+GMP 
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQ--PVQPSQTSTYPGQGMPT 59

Query: 80  YKNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
            KNP ++G L +K+ V +P S   NDA+ + ++
Sbjct: 60  PKNPSQRGNLIVKYKVDYPISL--NDAQKRAID 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.95
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.93
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.52
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.16

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.9e-29  Score=176.46  Aligned_cols=90  Identities=34%  Similarity=0.669  Sum_probs=85.6

Q ss_pred             CCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCC
Q psy4965          19 RFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP   98 (179)
Q Consensus        19 ~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP   98 (179)
                      .|+|+|+||++++.|||++|++|+++.|+|+||+.+.|++|++  +++|+.++|+|+|||.+++++.+|||||+|+|.||
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P   78 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYP   78 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCC
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccc--cccccccccCCCCCCcCCCCCCcCCEEEEEEEEcC
Confidence            4999999999999999999999999999999999999999999  99999999999999998776789999999999999


Q ss_pred             CCCCCCHHHHHHHH
Q psy4965          99 ESYFNNDAKLKELE  112 (179)
Q Consensus        99 ~~~~l~~~~~~~l~  112 (179)
                      ++  ||++|+++|+
T Consensus        79 ~~--ls~~qk~~lE   90 (90)
T d1c3ga2          79 IS--LNDAQKRAID   90 (90)
T ss_dssp             SS--CCTTHHHHTC
T ss_pred             CC--CCHHHHHhhC
Confidence            99  9999988764

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.7e-26  Score=157.55  Aligned_cols=80  Identities=40%  Similarity=0.543  Sum_probs=76.8

Q ss_pred             CCeeeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEeCC
Q psy4965          19 RFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP   98 (179)
Q Consensus        19 ~F~R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~fP   98 (179)
                      .|+|+|+||+++++|+|.||++|+++.|+|+||+.+.+++|+++++++|++++|+|+|||..++ +.+|||||+|+|+||
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~V~~P   79 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-GGYGNLIIKFTIKDP   79 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS-CSBCCEEEEEEEECC
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCc-CCcCcEEEEEEEEcC
Confidence            5999999999999999999999999999999999999999999999999999999999999876 589999999999999


Q ss_pred             C
Q psy4965          99 E   99 (179)
Q Consensus        99 ~   99 (179)
                      +
T Consensus        80 k   80 (80)
T d1nlta2          80 E   80 (80)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.2e-14  Score=97.82  Aligned_cols=70  Identities=17%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             eeCCcEEEEeccCHHHHhcCcEEEEeccCCcEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEe
Q psy4965          22 RQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ   96 (179)
Q Consensus        22 R~g~DL~~~~~Isl~eAl~G~~~~i~~ldGr~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~   96 (179)
                      |+|.|+++++.|||.||+.|+++.|.. +.+.+.|+||+|  +++|+.++++|+|.+..+  +.+|||||++++.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~-~~~~~~i~Ip~G--~~~G~~ir~~g~G~~~~~--~~~GDl~v~i~~~   71 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLAL-NRKILEVHVEPG--MKDGQRIVFKGEADQAPD--VIPGDVVFIVSER   71 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEE-EEEEEEEEECTT--CCTTCEEEETTCSCCCTT--CBCCCEEEEEEEC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceee-cCccEEEEeccc--ccCCeEEEecCCcCCCCC--CCCCCEEEEEEec
Confidence            789999999999999999999999985 566799999999  999999999999998754  4689999999875

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=4.9e-11  Score=80.74  Aligned_cols=69  Identities=17%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             CcEEEEeccCHHHHhcCcEEEEe----ccCC----cEEEEEcCCCCccCCCcEEEEcCCccCCCCCCCCCCCeEEEEEEe
Q psy4965          25 INLVTTETITLTEALCGFTKVIK----HLDD----RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ   96 (179)
Q Consensus        25 ~DL~~~~~Isl~eAl~G~~~~i~----~ldG----r~i~i~ip~G~vi~~g~~~~i~geGmP~~~~~~~~GdL~I~f~V~   96 (179)
                      +|+.+++.|||.||+.|+++.|.    ..+|    +++.|.||||  +++|+.++++|+|.....+ +..|||||.|+++
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~~~i~~~   77 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG--WKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK   77 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT--CCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCC--CCCCcEEEECCccccCcCC-CCCCCEEEEEEeC
Confidence            47899999999999999987664    3444    3699999999  9999999999999987653 4689999999875