Psyllid ID: psy4966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MFLVVGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPRK
Secondary Structure (PSIPRED)
cEEEEEEccccccccccccEEcccccEEEEEEccccccccccccccEEEEccccccccccHHHHHHcccccccccccccEEEcccccEEEEcHHHHHHHHHHccccccEEEEcccccccccEEEEEEEEcccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccccccEEcccEEEEEEcccccccccccccEEEEEEccccccccccHHHHHHHHcccccEEcccEEEEccccEEEEEcHHHHHHHHHHcccHHHEEEEcccccccccEEEEEEEEcccccccHHHHHHHHccccc
Coil and Loop (DISEMBL)
MFLVVGlvgkskqkatltgkhfqehnaikiidpvtsvqlpdgktgelclkgdvflgyrNKVEATKEmldddgwlhtgdlayrlpdgthfiispcelesifrqhpdvedvavigiphdvfgelpaavvvpkpnssvtAEEVKQFVEFPRK
Flexible Loop (DISEMBL)
mflvvglvgkskqkatltgkhfqehnaikiidpvtsvqlpdgktgelclkgdvFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVvpkpnssvtaeevkqfvefprk
Low Complexity Region (SEG)
MFLVVGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPRK
Disordered region (IsUnstruct)
**LVVGLVGK***KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV*********************
Disordered Region (DISOPRED)
MFLVVG*VGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR*
Disordered Region (DISEMBL)
MFLVVGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPRK
Disordered Region (DISPRO)
MFLVVGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLVVGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFPRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q6ETN3	554	Probable 4-coumarate--CoA	yes	N/A	0.785	0.211	0.378	3e-21
P13129	548	Luciferin 4-monooxygenase	N/A	N/A	0.778	0.211	0.412	1e-20
Q9S725	556	4-coumarate--CoA ligase 2	yes	N/A	0.791	0.212	0.390	2e-20
Q26304	548	Luciferin 4-monooxygenase	N/A	N/A	0.785	0.213	0.401	2e-20
Q27757	545	Luciferin 4-monooxygenase	N/A	N/A	0.852	0.233	0.398	3e-20
P08659	550	Luciferin 4-monooxygenase	N/A	N/A	0.778	0.210	0.412	3e-20
O24145	547	4-coumarate--CoA ligase 1	N/A	N/A	0.785	0.213	0.371	5e-20
Q01158	548	Luciferin 4-monooxygenase	N/A	N/A	0.778	0.211	0.396	6e-20
Q67W82	559	Probable 4-coumarate--CoA	no	N/A	0.785	0.209	0.371	9e-20
Q9LU36	570	4-coumarate--CoA ligase 4	no	N/A	0.791	0.207	0.353	8e-19

>sp|Q6ETN3|4CL3_ORYSJ Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI+DP T   L   ++GE+C++G+ +  GY N  EATK  +D+DGWLHTGD+ +   D 
Sbjct: 368 LKIVDPDTGTSLGRNQSGEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDD 427

Query: 87  THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI+               P ELE++   HP+++D AV+ +  D+ GE+P A +V    
Sbjct: 428 EIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEG 487

Query: 133 SSVTAEEVKQFV 144
           S +T +E+K+FV
Sbjct: 488 SEITEDEIKKFV 499

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|P13129|LUCI_LUCCR Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 15/131 (11%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K+ID  T   L   + GE+C+KG + + GY N  EATKE++D++GWLHTGD+ Y   +  
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433

Query: 88  HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+               P ELES+  QHP + D  V G+P  V GELP AVVV +   
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493

Query: 134 SVTAEEVKQFV 144
           ++T +EV  +V
Sbjct: 494 NMTEKEVMDYV 504

Produces green light with a wavelength of 544 nm.

Luciola cruciata (taxid: 7051)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 15/133 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI+DP T   LP  K GE+C++G+ +  GY N   AT   +D DGWLHTGD+ +   D 
Sbjct: 383 MKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDD 442

Query: 87  THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI+              +P ELES+   HP++ DVAV+ +  +  GE+P A VV   +
Sbjct: 443 ELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVVRSKD 502

Query: 133 SSVTAEEVKQFVE 145
           S+++ +E+KQFV 
Sbjct: 503 SNISEDEIKQFVS 515

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q26304|LUCI_LUCMI Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +K+ID  T   L   + GE+C+KG  + LGY N  EAT+E +D++GWLHTGD+ Y   D 
Sbjct: 373 VKVIDLDTKKTLGVNRRGEICVKGPSLMLGYSNNPEATRETIDEEGWLHTGDIGYYDEDE 432

Query: 87  THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI+               P ELES+  QHP++ D  V G+P    GELP AVVV +  
Sbjct: 433 HFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPDAGELPGAVVVMEKG 492

Query: 133 SSVTAEEVKQFV 144
            ++T +E+  +V
Sbjct: 493 KTMTEKEIVDYV 504

Produces green light with a wavelength of 570 nm.

Luciola mingrelica (taxid: 27446)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q27757|LUCI_PHOPE Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 78/143 (54%), Gaps = 16/143 (11%)

Query: 18  TGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHT 76
           TGK    H A+K++DP T   L   +TGEL  KGD+ +  Y N  EATK +++ DGWL +
Sbjct: 361 TGKIVPFH-AVKVVDPTTGKILGPNETGELYFKGDMIMKSYYNNEEATKAIINKDGWLRS 419

Query: 77  GDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGEL 122
           GD+AY   DG  +I+              +P E+E I  QHP + D  V GIP +  GEL
Sbjct: 420 GDIAYYDNDGHFYIVDRLKSLIKYKGYQVAPAEIEGILLQHPYIVDAGVTGIPDEAAGEL 479

Query: 123 PAAVVVPKPNSSVTAEEVKQFVE 145
           PAA VV +    +  + V+ FV 
Sbjct: 480 PAAGVVVQTGKYLNEQIVQNFVS 502

Produces green light with a wavelength of 562 nm.

Photuris pennsylvanica (taxid: 41716)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|P08659|LUCI_PHOPY Luciferin 4-monooxygenase OS=Photinus pyralis PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 15/131 (11%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K++D  T   L   + GELC++G + + GY N  EAT  ++D DGWLH+GD+AY   D  
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 431

Query: 88  HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+              +P ELESI  QHP++ D  V G+P D  GELPAAVVV +   
Sbjct: 432 FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491

Query: 134 SVTAEEVKQFV 144
           ++T +E+  +V
Sbjct: 492 TMTEKEIVDYV 502

Produces green light with a wavelength of 562 nm.

Photinus pyralis (taxid: 7054)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI+DP T   LP  + GE+C++GD +  GY N  EAT   +D +GWLHTGD+ +   D 
Sbjct: 374 MKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDD 433

Query: 87  THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI+              +P E+E++   HP++ D AV+ +  +  GE+P A VV    
Sbjct: 434 ELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNG 493

Query: 133 SSVTAEEVKQFV 144
           S++T +EVK F+
Sbjct: 494 SAITEDEVKDFI 505

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q01158|LUCI_LUCLA Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 15/131 (11%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K+ID  T   L   + GE+C+KG + + GY +  EAT+E++D++GWLHTGD+ Y   +  
Sbjct: 374 KVIDLDTKKTLGPNRRGEVCVKGPMLMKGYVDNPEATREIIDEEGWLHTGDIGYYDEEKH 433

Query: 88  HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+               P ELES+  QHP++ D  V G+P  + GELP AVVV +   
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPIAGELPGAVVVLEKGK 493

Query: 134 SVTAEEVKQFV 144
           S+T +EV  +V
Sbjct: 494 SMTEKEVMDYV 504

Produces green light.

Luciola lateralis (taxid: 7052)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q67W82|4CL4_ORYSJ Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI+DP T   L   ++GE+C++G+ +  GY N  E+TK  +D  GWLHTGD+ Y   D 
Sbjct: 378 LKIVDPDTGATLGRNQSGEICIRGEQIMKGYLNDPESTKNTIDKGGWLHTGDIGYVDDDD 437

Query: 87  THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI+               P ELE++   HPD++D AV+ +  ++ GE+P A +V    
Sbjct: 438 EIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIAGEVPVAFIVRIEG 497

Query: 133 SSVTAEEVKQFV 144
           S+++  E+KQFV
Sbjct: 498 SAISENEIKQFV 509

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9LU36|4CL4_ARATH 4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 15/133 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +K++D  T + LP  K+GE+C++G   + GY N  EAT   +D DGWLHTGD+ +   D 
Sbjct: 397 MKVVDTETGISLPRNKSGEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDD 456

Query: 87  THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI+              +P ELE++   HP ++D AV+ +  +V  E+P A V     
Sbjct: 457 EIFIVDRLKELIKFKGYQVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVARSQG 516

Query: 133 SSVTAEEVKQFVE 145
           S +T ++VK +V 
Sbjct: 517 SQLTEDDVKSYVN 529

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
262201331	542	AMP-dependent synthetase and ligase [Gor	0.798	0.219	0.444	5e-22
321471684	595	hypothetical protein DAPPUDRAFT_316477 [	0.791	0.198	0.428	2e-21
359385572	547	firefly luciferase [Drilaster axillaris]	0.872	0.237	0.452	2e-21
339251840	259	hypothetical protein Tsp_10497 [Trichine	0.785	0.451	0.417	5e-21
380023013	525	PREDICTED: luciferin 4-monooxygenase-lik	0.785	0.222	0.416	6e-21
301078349	547	luciferase [Taximastinocerus sp. FGCA-20	0.778	0.212	0.396	7e-21
321471668	538	hypothetical protein DAPPUDRAFT_316454 [	0.791	0.219	0.406	7e-21
312382599	564	hypothetical protein AND_04666 [Anophele	0.932	0.246	0.397	7e-21
307209139	470	Luciferin 4-monooxygenase [Harpegnathos	0.785	0.248	0.416	1e-20
374081828	555	firefly luciferase [Stenocladius azumai]	0.791	0.212	0.436	1e-20

>gi|262201331|ref|YP_003272539.1| AMP-dependent synthetase and ligase [Gordonia bronchialis DSM 43247] gi|262084678|gb|ACY20646.1| AMP-dependent synthetase and ligase [Gordonia bronchialis DSM 43247]

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 16/135 (11%)

Query: 25  HNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
           H  IK++DPVT   LP G+TGE C +G  V  GY N+ E T E +D DGW+HTGDLA   
Sbjct: 363 HLEIKVVDPVTGETLPRGETGEFCTRGYSVMKGYWNQPEKTAEAIDGDGWMHTGDLAVMA 422

Query: 84  PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFG-ELPAAVVV 128
           PDG   I              I P E+E     HPD+ D  VIG+P + +G EL A V +
Sbjct: 423 PDGYVAITGRIKDMVIRGGENIYPREIEEFLYTHPDILDAQVIGVPDEKYGEELMAWVRL 482

Query: 129 PKPNSSVTAEEVKQF 143
            KP + +TAE+V++F
Sbjct: 483 RKPATDLTAEDVREF 497

Source: Gordonia bronchialis DSM 43247

Species: Gordonia bronchialis

Genus: Gordonia

Family: Gordoniaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

>gi|321471684|gb|EFX82656.1| hypothetical protein DAPPUDRAFT_316477 [Daphnia pulex]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 15/133 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +K++D VT + L  G+ GE+C+KG   + GY    +ATKE +D+DGWLHTGD+AY     
Sbjct: 427 VKVVDLVTGLSLGPGQHGEVCIKGPQLMKGYYKNEKATKETIDNDGWLHTGDMAYYNEQN 486

Query: 87  THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI+              +P ELE I R+ P + DVAVIG+P D+ GELP A VV K +
Sbjct: 487 QFFIVDRLKELIKVKGFQVAPSELEDILRRIPGILDVAVIGVPDDIAGELPRAYVVKKES 546

Query: 133 SSVTAEEVKQFVE 145
            S+T + + +FV+
Sbjct: 547 ISLTEKNIIEFVD 559

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|359385572|dbj|BAL40875.1| firefly luciferase [Drilaster axillaris]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 83/146 (56%), Gaps = 16/146 (10%)

Query: 14  KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDG 72
           KA  TGK     +A KIID  T   L   + GELCLKGD+ + GY N  EAT  ++D DG
Sbjct: 359 KAGSTGKVVPFFSA-KIIDLDTRQSLGPHQKGELCLKGDMIMKGYANNPEATNALIDKDG 417

Query: 73  WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDV 118
           WLH+GD+AY   DG  FI+              +P ELES+  QHP + D  V GIP +V
Sbjct: 418 WLHSGDIAYYDEDGHFFIVDRLKSLIKYKGYQVAPAELESVLLQHPYIFDAGVTGIPDEV 477

Query: 119 FGELPAAVVVPKPNSSVTAEEVKQFV 144
            GELPAA VV +    +T +EV  +V
Sbjct: 478 AGELPAACVVLEKGKHLTEKEVMDYV 503

Source: Drilaster axillaris

Species: Drilaster axillaris

Genus: Drilaster

Family: Lampyridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|339251840|ref|XP_003372942.1| hypothetical protein Tsp_10497 [Trichinella spiralis] gi|316968685|gb|EFV52938.1| hypothetical protein Tsp_10497 [Trichinella spiralis]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 10/127 (7%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K+ID  +  +LP GK+GE+CL+     +GY     AT++++D +GW+HTGD+ Y   DG 
Sbjct: 90  KVIDIESGEELPAGKSGEICLRSPTCTIGYFGNSAATQQLIDKNGWIHTGDIGYYDEDGD 149

Query: 88  HFI---------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE 138
            FI         + P ELE +    PD+ D AV+GIP    GE+P A VV KPNS++TA 
Sbjct: 150 FFIQDRIKEMIKLCPAELEELLLSFPDITDAAVVGIPDTYCGEVPFAFVVKKPNSAITAL 209

Query: 139 EVKQFVE 145
           E+ + +E
Sbjct: 210 EIAKNIE 216

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|380023013|ref|XP_003695326.1| PREDICTED: luciferin 4-monooxygenase-like [Apis florea]

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           IKIID  T   L   +TGELC K   +  GY   +EATK++ D +GWLH+GDLAY   +G
Sbjct: 346 IKIIDTETGKTLGPNQTGELCAKTWTMMTGYHKNLEATKDIFDKNGWLHSGDLAYYNENG 405

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI              ISP ++E++ + HP V +V V+GIPH ++ ELP A +   PN
Sbjct: 406 EVFIVDRLKEIIKYKGYQISPNKIETLLQSHPAVLEVGVVGIPHPIYDELPVAFISKIPN 465

Query: 133 SSVTAEEVKQFV 144
             V+ EE+ + V
Sbjct: 466 KEVSEEELSKMV 477

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301078349|gb|ADK56478.1| luciferase [Taximastinocerus sp. FGCA-2010]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 15/131 (11%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           KI+D  T   L   + GE+C K ++ + GY N  EAT+E +D+DGWLH+GD+ Y   DGT
Sbjct: 370 KILDKATGKALGPNERGEICFKSEMLMKGYHNNPEATRETIDEDGWLHSGDIGYYEEDGT 429

Query: 88  HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            +I+              +P ELE++  QHPD+ D  V G+P    G+LPAA +V +P  
Sbjct: 430 IYIVDRLKELIKYKGYQVAPAELENLLLQHPDIADAGVTGVPDGFAGQLPAACIVLEPGK 489

Query: 134 SVTAEEVKQFV 144
           ++T +EV  F+
Sbjct: 490 TLTEKEVVDFL 500

Source: Taximastinocerus sp. FGCA-2010

Species: Taximastinocerus sp. FGCA-2010

Genus: Taximastinocerus

Family: Phengodidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471668|gb|EFX82640.1| hypothetical protein DAPPUDRAFT_316454 [Daphnia pulex]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 15/133 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +K++D  T   L  G+ GE+C++G   + GY N  +ATKE +D DGWLHTGD+ Y   + 
Sbjct: 366 VKVVDVETGESLGPGQQGEMCVRGPQMMKGYHNNEKATKETVDSDGWLHTGDIVYYDEEN 425

Query: 87  THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             F++              SP ELE + R+H  V DVAVIG+P ++ GELP A VV K  
Sbjct: 426 QFFVVDRLKELIKVKGLQVSPSELEDVIRRHSGVSDVAVIGVPDEIAGELPRAYVVKKKG 485

Query: 133 SSVTAEEVKQFVE 145
            +V+ E++ +FV+
Sbjct: 486 VAVSKEDIAEFVD 498

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382599|gb|EFR28003.1| hypothetical protein AND_04666 [Anopheles darlingi]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 17/156 (10%)

Query: 5   VGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEA 63
           +G++ +   K    GK   +   +K+ID  T V L  G+TGE+C+KG + + GY N  +A
Sbjct: 366 LGVISRVNDKVGSVGK-VHKTTYVKVIDLDTGVPLGPGQTGEICVKGPLVMKGYLNNEQA 424

Query: 64  TKEMLDDDGWLHTGDLAY-----------RLPDGTH---FIISPCELESIFRQHPDVEDV 109
           T+EMLD DGWL TGD+ Y           RL D      F + P ELE +   HP V D 
Sbjct: 425 TREMLDADGWLRTGDIGYYDEEQDFFIVDRLKDLIKYKAFQVPPAELEDVLLSHPKVRDA 484

Query: 110 AVIGIPHDVFGELPAAVVVPKPNSS-VTAEEVKQFV 144
           AV+G+P +  GELPAA VV +P++  +T  ++ Q+V
Sbjct: 485 AVVGLPDEAAGELPAAFVVLQPDTEPITEAQLGQYV 520

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209139|gb|EFN86281.1| Luciferin 4-monooxygenase [Harpegnathos saltator]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 15/132 (11%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG- 86
           K++D  T   L  G+TGE+C KGD V +GY N  E TK+ +D+DGWLHTGD+ Y    G 
Sbjct: 296 KVVDIKTLETLDVGQTGEICFKGDQVMMGYWNNPEITKQTIDEDGWLHTGDIGYYDEQGA 355

Query: 87  -------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
                          + +SP E+E +   HP V++ AV GIP    GELPAAV+V +P +
Sbjct: 356 LHVVDRLKELIKYNAYQVSPSEIEIVLLSHPAVKEAAVCGIPDPRSGELPAAVIVKQPGA 415

Query: 134 SVTAEEVKQFVE 145
           ++TA ++ +FV+
Sbjct: 416 NLTAHDIMEFVK 427

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|374081828|dbj|BAL46509.1| firefly luciferase [Stenocladius azumai]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 75/133 (56%), Gaps = 15/133 (11%)

Query: 27  AIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           + KI+D      +   + GELCLKGD + +GY N   AT EM+D DGWLH+GD+AY   D
Sbjct: 379 SAKIVDLNNGKSVGPHQRGELCLKGDMIMMGYCNNKAATDEMIDKDGWLHSGDIAYYDED 438

Query: 86  GTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
           G  FI+              +P ELE++  QHP V D  V G+P DV GELP A VV + 
Sbjct: 439 GHFFIVDRLKSLVKYKGYQVAPAELEAVLLQHPCVFDAGVTGVPDDVAGELPGACVVLEK 498

Query: 132 NSSVTAEEVKQFV 144
              VT +EV  +V
Sbjct: 499 GKHVTEQEVMDYV 511

Source: Stenocladius azumai

Species: Stenocladius azumai

Genus: Stenocladius

Family: Lampyridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
UNIPROTKB|Q26304	548	Q26304 "Luciferin 4-monooxygen	0.785	0.213	0.401	8.6e-20
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.798	0.214	0.4	1.1e-19
TAIR|locus:2015499	542	ACOS5 "acyl-CoA synthetase 5"	0.785	0.215	0.409	2.3e-19
UNIPROTKB|P08659	550	P08659 "Luciferin 4-monooxygen	0.778	0.210	0.412	3.9e-19
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.798	0.212	0.392	8.6e-19
WB|WBGene00008669	544	acs-14 [Caenorhabditis elegans	0.778	0.213	0.406	1.7e-18
TAIR|locus:2094771	570	4CL5 "4-coumarate:CoA ligase 5	0.798	0.208	0.362	4e-18
DICTYBASE|DDB_G0284831	551	4cl1 "4-coumarate-CoA ligase"	0.751	0.203	0.409	7.8e-18
DICTYBASE|DDB_G0284745	551	4cl2 "4-coumarate-CoA ligase"	0.758	0.205	0.398	1e-17
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.812	0.215	0.397	1e-17

UNIPROTKB|Q26304 Q26304 "Luciferin 4-monooxygenase" [Luciola mingrelica (taxid:27446)]

 Score = 243 (90.6 bits), Expect = 8.6e-20, P = 8.6e-20
 Identities = 53/132 (40%), Positives = 75/132 (56%)

Query:    28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
             +K+ID  T   L   + GE+C+KG  + LGY N  EAT+E +D++GWLHTGD+ Y   D 
Sbjct:   373 VKVIDLDTKKTLGVNRRGEICVKGPSLMLGYSNNPEATRETIDEEGWLHTGDIGYYDEDE 432

Query:    87 THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
               FI+               P ELES+  QHP++ D  V G+P    GELP AVVV +  
Sbjct:   433 HFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPDAGELPGAVVVMEKG 492

Query:   133 SSVTAEEVKQFV 144
              ++T +E+  +V
Sbjct:   493 KTMTEKEIVDYV 504

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0005777 "peroxisome" evidence=ISS

GO:0008218 "bioluminescence" evidence=IDA

GO:0047077 "Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 54/135 (40%), Positives = 79/135 (58%)

Query:    26 NA-IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
             NA +KI+DP T   LP  K GE+C++G+ +  GY N   AT   +D DGWLHTGD+ +  
Sbjct:   380 NAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFID 439

Query:    84 PDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
              D   FI+              +P ELES+   HP++ DVAV+ +  +  GE+P A VV 
Sbjct:   440 DDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAFVVR 499

Query:   130 KPNSSVTAEEVKQFV 144
               +S+++ +E+KQFV
Sbjct:   500 SKDSNISEDEIKQFV 514

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 54/132 (40%), Positives = 73/132 (55%)

Query:    28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
             +K IDP T   LP   +GELC++   V  GY    E T + +D+ GWLHTGD+ Y   DG
Sbjct:   369 VKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDG 428

Query:    87 THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
               FI+              +P ELE+I   HP VEDVAV+ +P +  GE+PAA VV  P 
Sbjct:   429 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVINPK 488

Query:   133 SSVTAEEVKQFV 144
             ++   E++  FV
Sbjct:   489 ATEKEEDILNFV 500

GO:0003824 "catalytic activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS;IDA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031956 "medium-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0080110 "sporopollenin biosynthetic process" evidence=IMP;TAS

UNIPROTKB|P08659 P08659 "Luciferin 4-monooxygenase" [Photinus pyralis (taxid:7054)]

 Score = 237 (88.5 bits), Expect = 3.9e-19, P = 3.9e-19
 Identities = 54/131 (41%), Positives = 76/131 (58%)

Query:    29 KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
             K++D  T   L   + GELC++G + + GY N  EAT  ++D DGWLH+GD+AY   D  
Sbjct:   372 KVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 431

Query:    88 HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
              FI+              +P ELESI  QHP++ D  V G+P D  GELPAAVVV +   
Sbjct:   432 FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491

Query:   134 SVTAEEVKQFV 144
             ++T +E+  +V
Sbjct:   492 TMTEKEIVDYV 502

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 8.6e-19, P = 8.6e-19
 Identities = 53/135 (39%), Positives = 76/135 (56%)

Query:    26 NA-IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
             NA +KI+DP T   L   + GE+C++G  +  GY N   AT E +D DGWLHTGD+    
Sbjct:   387 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 446

Query:    84 PDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
              D   FI+              +P ELE++   HPD+ DVAV+ +  +  GE+P A VV 
Sbjct:   447 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 506

Query:   130 KPNSSVTAEEVKQFV 144
               +S ++ ++VKQFV
Sbjct:   507 SKDSELSEDDVKQFV 521

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

WB|WBGene00008669 acs-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 231 (86.4 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 54/133 (40%), Positives = 76/133 (57%)

Query:    28 IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
             +KI++P T  + P  + GE+C++G  + LGY  + EAT   + D GWLHTGD+ Y   DG
Sbjct:   374 MKIVEPGTDREQPVNQRGEICVRGPTIMLGYLGRPEATASTVID-GWLHTGDIGYLNEDG 432

Query:    87 THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
               FI+               P ELE +   HP + D AVIGIP    GELP A VV + +
Sbjct:   433 NLFIVDRLKELIKVKGLQVPPAELEDLLLSHPKIRDCAVIGIPDAKAGELPKAFVV-RAD 491

Query:   133 SSVTAEEVKQFVE 145
             +++T +EVK FV+
Sbjct:   492 NTLTEQEVKDFVK 504

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 4.0e-18, P = 4.0e-18
 Identities = 49/135 (36%), Positives = 75/135 (55%)

Query:    26 NA-IKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRL 83
             NA +K++D  T + LP  K+GE+C++G   + GY N  EAT   +D DGWLHTGD+ +  
Sbjct:   394 NAEMKVVDTETGISLPRNKSGEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVD 453

Query:    84 PDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
              D   FI+              +P ELE++   HP ++D AV+ +  +V  E+P A V  
Sbjct:   454 DDDEIFIVDRLKELIKFKGYQVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVAR 513

Query:   130 KPNSSVTAEEVKQFV 144
                S +T ++VK +V
Sbjct:   514 SQGSQLTEDDVKSYV 528

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009699 "phenylpropanoid biosynthetic process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

DICTYBASE|DDB_G0284831 4cl1 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 225 (84.3 bits), Expect = 7.8e-18, P = 7.8e-18
 Identities = 52/127 (40%), Positives = 71/127 (55%)

Query:    29 KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
             KII P T   L  G+ GE+C+KG +V LGY N  +AT E++D DG+L TGD+ Y   DG 
Sbjct:   380 KIISPETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGY 439

Query:    88 HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
             +FI+               P ELE++   HP V D  V+G+     GE+P   VV K N 
Sbjct:   440 YFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQNE 499

Query:   134 SVTAEEV 140
             S+T +E+
Sbjct:   500 SLTEKEL 506

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0284745 4cl2 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 224 (83.9 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 51/128 (39%), Positives = 71/128 (55%)

Query:    28 IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
             +KII P T   L  G+ GE+C+KG +V LGY N  +AT E++D DG+  TGD+ Y   DG
Sbjct:   379 VKIISPETGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDG 438

Query:    87 THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
              +FI+               P ELE++   HP V D  V+G+     GE+P   VV K N
Sbjct:   439 YYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQN 498

Query:   133 SSVTAEEV 140
              S+T +E+
Sbjct:   499 ESLTEKEL 506

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 54/136 (39%), Positives = 74/136 (54%)

Query:    24 EHNAIKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAY- 81
             E+   KI+DP T   LP GKTGEL L+G V + GY    +A+ E +D +GWL TGDL Y 
Sbjct:   383 ENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKASAETVDKEGWLKTGDLCYF 442

Query:    82 ----------RLPDGTHFI---ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
                       RL +   +    + P ELE I   +PDV D AV+  P +  GE+P A +V
Sbjct:   443 DSEDFLYIVDRLKELIKYKAYQVPPVELEQILHSNPDVIDAAVVPFPDEDAGEIPMAFIV 502

Query:   129 PKPNSSVTAEEVKQFV 144
              KP S++   ++  FV
Sbjct:   503 RKPGSNLNEAQIIDFV 518

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-43
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	8e-41
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-38
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-36
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	5e-36
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-35
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-34
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-33
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-33
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	7e-33
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-31
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-31
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-28
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	5e-28
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-27
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-27
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-27
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-27
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	6e-27
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	8e-27
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-26
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-26
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-25
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-25
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-24
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-24
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-23
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	8e-23
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	5e-22
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-22
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	1e-21
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-21
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	7e-21
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-20
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-20
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-20
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	9e-20
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-19
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-19
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	4e-19
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-19
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	6e-19
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	6e-19
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	9e-19
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-18
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-18
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	4e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-18
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	6e-18
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-17
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	3e-17
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-17
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	7e-17
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-16
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-16
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-16
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-16
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-16
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-16
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	5e-16
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-15
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	4e-15
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-15
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	5e-15
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	9e-15
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-14
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-14
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-14
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-14
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-14
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-14
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	9e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	1e-13
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-13
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-13
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-13
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	5e-13
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-13
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	8e-13
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	1e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-12
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-12
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-12
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-12
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-12
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-12
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	6e-12
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	6e-12
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	6e-12
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	9e-12
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	3e-11
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-11
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	5e-11
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	9e-11
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-10
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-10
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-10
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-10
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-10
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	2e-10
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	4e-10
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-10
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	5e-10
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	6e-10
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-09
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	6e-09
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	7e-09
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	7e-09
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	8e-09
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	9e-09
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-08
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-08
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-08
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	2e-08
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-08
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	5e-08
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	5e-08
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	7e-08
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	8e-08
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-07
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-07
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	3e-07
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	9e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-06
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	2e-06
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	4e-06
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	1e-05
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	2e-05
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-05
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-05
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	5e-05
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	6e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-04
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-04
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-04
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	4e-04
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	4e-04
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	7e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	0.004

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  148 bits (377), Expect = 1e-43
 Identities = 61/133 (45%), Positives = 77/133 (57%), Gaps = 15/133 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            KI+D      L   + GELC+KG  +  GY N  EATKE +D+DGWLHTGD+ Y   DG
Sbjct: 327 AKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDG 386

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             +I              + P ELE++  +HP V D AVIGIP +V GELP A VV KP 
Sbjct: 387 NFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPG 446

Query: 133 SSVTAEEVKQFVE 145
           S +T +EVK +V 
Sbjct: 447 SKLTEQEVKDYVA 459

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  138 bits (351), Expect = 8e-41
 Identities = 55/136 (40%), Positives = 74/136 (54%), Gaps = 16/136 (11%)

Query: 24  EHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
               +KI+DP    ++P G+ GE+C++G  V  GY N  EAT E +D DGWLHTGDL Y 
Sbjct: 180 PGVEVKIVDPDGG-EVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYM 238

Query: 83  LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
             DG   I              I P E+E     HP V + AV+G+P +  GE+ AA VV
Sbjct: 239 DEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVV 298

Query: 129 PKPNSSVTAEEVKQFV 144
            KP +++T EE+  F 
Sbjct: 299 LKPGATLTEEELIAFC 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  135 bits (342), Expect = 2e-38
 Identities = 58/132 (43%), Positives = 75/132 (56%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            KI+DP T   LP  + GEL ++G  V  GY N  EAT E +D DGWLHTGDL Y   DG
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDG 400

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI              ++P ELE++   HP++ D AVI  P +  GE+P A VV +P 
Sbjct: 401 YLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPG 460

Query: 133 SSVTAEEVKQFV 144
           S ++ +EV QFV
Sbjct: 461 SELSEDEVMQFV 472

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  130 bits (329), Expect = 2e-36
 Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 18/135 (13%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           ++I+DP     LP G+ GE+ ++G  V  GY N+ EAT E  D+DGWL TGDL Y   DG
Sbjct: 357 VRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDG 415

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP- 131
             +I              I P E+E++  +HP V + AV+G+P + +GE   AVVV KP 
Sbjct: 416 YLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPG 475

Query: 132 -NSSVTAEEVKQFVE 145
            ++ +TAEE++ F+ 
Sbjct: 476 GDAELTAEELRAFLR 490

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  128 bits (325), Expect = 5e-36
 Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 17/131 (12%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI+D   +  LP G+ GEL ++G  V  GY N+ E T E+L D GWL TGD+ Y   DG
Sbjct: 306 VKIVDDEGNE-LPPGEVGELVVRGPQVMKGYWNRPEETAEVLTD-GWLRTGDIGYMDEDG 363

Query: 87  --------THFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
                      II       P E+E +   HP V + AV+G+P    GE   A VV K  
Sbjct: 364 YFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEG 423

Query: 133 SSVTAEEVKQF 143
           +S+T EE+  F
Sbjct: 424 ASLTEEELIAF 434

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  124 bits (315), Expect = 2e-35
 Identities = 56/132 (42%), Positives = 77/132 (58%), Gaps = 17/132 (12%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           ++I+D     +LP G+ GE+ ++G  V  GY N+ EAT E L D GWLHTGDL Y   DG
Sbjct: 180 VRIVDEDGR-ELPPGEVGEIVVRGPAVMAGYWNRPEATAEALRD-GWLHTGDLGYLDEDG 237

Query: 87  THF--------IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             +        IIS      P E+E++   HP V DVAVIG+P + +GE   AVVV +P 
Sbjct: 238 YLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPG 297

Query: 133 SSVTAEEVKQFV 144
           +++ AEE+  F 
Sbjct: 298 ATLDAEELIAFC 309

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  124 bits (314), Expect = 3e-34
 Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 15/136 (11%)

Query: 23  QEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
             H  +KI+DP T   +P G+ GELC +G  V  GY N  E T E +D DGW+HTGDLA 
Sbjct: 377 LPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAV 436

Query: 82  RLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
              +G   I              I P E+E     HP ++DV V+G+P + +GE   A +
Sbjct: 437 MDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWI 496

Query: 128 VPKPNSSVTAEEVKQF 143
           + +P +++T E+V+ F
Sbjct: 497 ILRPGATLTEEDVRDF 512

Length = 559

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  122 bits (309), Expect = 2e-33
 Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 17/134 (12%)

Query: 28  IKIIDPVTSVQLPDGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
            +I+D       PDG   GE+ ++G  +  GY N+ EAT E +D  GWLHTGD+ Y   D
Sbjct: 350 ARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG-GWLHTGDVGYIDED 408

Query: 86  GTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
           G  +I              I P ELE     HP V +VAVIG+P + +GE P AVVV KP
Sbjct: 409 GYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKP 468

Query: 132 NSSVTAEEVKQFVE 145
            +++ A+E++ F+ 
Sbjct: 469 GATLDAKELRAFLR 482

Length = 521

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  120 bits (304), Expect = 3e-33
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 16/131 (12%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           ++I+D      L  G+ GE+ ++G  VF  Y NK EAT E   +DGW  TGD+     DG
Sbjct: 269 VRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDG 328

Query: 87  THFI---------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
            + I               +S  E+E    +HP V +VAVIG+P   +GE   AVVVP+ 
Sbjct: 329 YYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEA 388

Query: 132 NSSVTAEEVKQ 142
            +++T  E++ 
Sbjct: 389 GAALTLAELRA 399

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  118 bits (297), Expect = 7e-33
 Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 17/134 (12%)

Query: 26  NAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
             + I+D      LP G+ GE+ ++G  V  GY N  EA +E   D GW  TGDL Y   
Sbjct: 180 VEVAILDDDGRP-LPPGQEGEIVIRGPNVTAGYLNNPEANREAFRD-GWFRTGDLGYLDE 237

Query: 85  DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
           DG  F+              ISP E+E +  +HP V +  V G+P +++GE  AA VV +
Sbjct: 238 DGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLR 297

Query: 131 PNSSVTAEEVKQFV 144
            +S VT EE++ F 
Sbjct: 298 ADSKVTIEELRDFA 311

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  117 bits (294), Expect = 2e-31
 Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 16/135 (11%)

Query: 26  NA-IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
           NA +KI+DP T   LP  + GE+C++G  +  GY N  EAT   +D DGWLHTGD+ Y  
Sbjct: 364 NAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYID 423

Query: 84  PDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
            D   FI+              +P ELE++   HP + D AV+ +  +V GE+P A VV 
Sbjct: 424 DDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVR 483

Query: 130 KPNSSVTAEEVKQFV 144
              S +T +E+KQFV
Sbjct: 484 SNGSEITEDEIKQFV 498

Length = 537

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  113 bits (286), Expect = 2e-31
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 25  HNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
              ++++D      LP G+ GEL ++G  V  GY N    T     +DGW  TGDL Y  
Sbjct: 177 GVEVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLD 235

Query: 84  PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
            +G  +I              + P E+ES+  QHP V + AV+G+P +  GE   A VV 
Sbjct: 236 EEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVL 295

Query: 130 KPNSSVTAEEVKQFV 144
           +P +   AEE+K  +
Sbjct: 296 RPGADALAEELKAHL 310

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  108 bits (271), Expect = 1e-28
 Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 20/133 (15%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKE---MLDDDGWLHTGDLAYRL 83
            ++IDP T  +LP G+ GE+ ++G  VF GY N+ EAT E    LD   +  TGDL Y  
Sbjct: 262 ARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYID 321

Query: 84  PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
            +G  F               + P E+E++  QHP V +V VIG P    GE+  A VV 
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381

Query: 130 KPN--SSVTAEEV 140
           KP+    VT E++
Sbjct: 382 KPDYRGKVTEEDI 394

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  106 bits (268), Expect = 5e-28
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 16/135 (11%)

Query: 24  EHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
             + I+I+D      +P G+ GEL  +G     GY    E       DDG+  TGDL   
Sbjct: 316 PADEIRIVDDQGEP-VPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRI 374

Query: 83  LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
             DG + +              ISP E+E++   HP V D AV+G+P +V GE   A VV
Sbjct: 375 DADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVV 434

Query: 129 PKPNSSVTAEEVKQF 143
           P+  ++ T  E++ F
Sbjct: 435 PRGGAAPTLAELRAF 449

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  106 bits (265), Expect = 2e-27
 Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 16/136 (11%)

Query: 23  QEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
           Q H  +K++DP  +  +P G+ GELC +G  V  GY N  EAT E +D+DGW+HTGDLA 
Sbjct: 379 QPHLEVKVVDPDGAT-VPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLAT 437

Query: 82  RLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
               G   I              I P E+E     HP V DV V G+P + +GE   A V
Sbjct: 438 MDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWV 497

Query: 128 VPKPNSSVTAEEVKQF 143
              P  + + EE+++F
Sbjct: 498 RLHPGHAASEEELREF 513

Length = 558

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  104 bits (263), Expect = 3e-27
 Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 16/128 (12%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            KI++ +   ++P G+ GEL ++G +V  GY +  EAT   +D DGWLHTGDL     +G
Sbjct: 348 NKIVNELGE-EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEG 406

Query: 87  THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             +I+               P E+E +  +HP V + AVIG+P +  GE+  A VV KP 
Sbjct: 407 YLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG 466

Query: 133 SSVTAEEV 140
           + +T EE+
Sbjct: 467 AELTEEEL 474

Length = 513

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  104 bits (261), Expect = 3e-27
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 20/134 (14%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGDV----FLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
           ++I+D     ++P G+ GEL ++       F GY    EAT +   + GW HTGD   R 
Sbjct: 256 VRIVDEDGR-EVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAWRN-GWFHTGDRGRRD 313

Query: 84  PDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
            DG  +F+             IS  E+E+    HP V + AV+ +P ++  +   AVVV 
Sbjct: 314 EDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVL 373

Query: 130 KPNSSVTAEEVKQF 143
           +P  ++  E + +F
Sbjct: 374 RPGETLDPEALLEF 387

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  104 bits (261), Expect = 4e-27
 Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 17/133 (12%)

Query: 26  NAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
             ++I+D      +P G+ GEL ++G  +FLGY +  + T E   DDGW  TGDL     
Sbjct: 271 VEVRIVDD-DGNDVPPGEEGELQVRGPQLFLGYLDPPDNT-EAFTDDGWFRTGDLGRLDA 328

Query: 85  DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
           DG   I              IS  E+E +  +HP V +VAV+ +P +  GE   AVVVP 
Sbjct: 329 DGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPA 388

Query: 131 PNSSVTAEEVKQF 143
           P +S+T  E+ + 
Sbjct: 389 PGASLTLAELTEH 401

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  104 bits (261), Expect = 6e-27
 Identities = 51/131 (38%), Positives = 67/131 (51%), Gaps = 16/131 (12%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            K+ID     +LP G+ GELC+KG  V  GY  + EAT E+LD DGWL TGD+A    DG
Sbjct: 389 CKVIDDD-GNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDG 447

Query: 87  --------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
                         + F + P ELE +    P V   A IG+P +  GE     VV KP 
Sbjct: 448 YMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG 507

Query: 133 SSVTAEEVKQF 143
            ++T E+V + 
Sbjct: 508 ETLTKEQVMEH 518

Length = 562

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  103 bits (259), Expect = 8e-27
 Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +K IDP T   LP    GELC++   V  GY N  E T   +D+DGWLHTGD+ Y   DG
Sbjct: 372 VKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDG 431

Query: 87  THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI+              +P ELE+I   HP VED AV+ +P +  GE+PAA VV  P 
Sbjct: 432 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPK 491

Query: 133 SSVTAEEVKQFV 144
           +  + E++  FV
Sbjct: 492 AKESEEDILNFV 503

Length = 546

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  103 bits (258), Expect = 2e-26
 Identities = 54/135 (40%), Positives = 72/135 (53%), Gaps = 19/135 (14%)

Query: 28  IKIIDPVTSVQLP-DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
           ++I+D     +LP DGKT GEL ++G  V   Y    E T+E L  DGW  TGD+A    
Sbjct: 352 LRIVDDEG-NELPWDGKTVGELVVRGPWVTGSYYKDPEKTEE-LTRDGWFRTGDVAVIDE 409

Query: 85  DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
           DG   I              IS  ELE+    HP V + AV+G+PH+ +GE P AVVV K
Sbjct: 410 DGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLK 469

Query: 131 PNSSVTAEEVKQFVE 145
           P + VT EE+ + + 
Sbjct: 470 PGAKVTEEELLEHLA 484

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  102 bits (256), Expect = 3e-26
 Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 22/137 (16%)

Query: 26  NAIKIIDPVTSVQLP-DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
             + ++DP T   +P DGKT GE+ ++G+ V  GY    EAT+E     GW H+GDLA  
Sbjct: 353 EEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAG-GWFHSGDLAVV 411

Query: 83  LPDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 126
            PDG  +I                IS  E+E +  +HP V + AV+  P + +GE P A 
Sbjct: 412 HPDG--YIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469

Query: 127 VVPKPNSSVTAEEVKQF 143
           VV KP +SVT EE+ ++
Sbjct: 470 VVLKPGASVTEEELIEY 486

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  100 bits (250), Expect = 2e-25
 Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 16/120 (13%)

Query: 40  PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI-------- 90
             G+ GE+C++G  V  GY N+ E T E   D GWLHTGD+A    DG ++I        
Sbjct: 361 AQGEVGEICVRGPLVMDGYWNRPEETAEAFRD-GWLHTGDVAREDEDGFYYIVDRKKDMI 419

Query: 91  ------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
                 + P E+E +  +HP V  VAVIG+P + +GE   AVVV +P ++V A E++  V
Sbjct: 420 VTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHV 479

Length = 524

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 98.8 bits (247), Expect = 3e-25
 Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 17/127 (13%)

Query: 33  PVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI- 90
           P   +++ + + GE+ ++G  +FLGY  +   T   LD+DGW HTGDL Y   +G  ++ 
Sbjct: 249 PGRELRIVNPQDGEILVRGPSLFLGYLPQGGLTPP-LDEDGWFHTGDLGYLDAEGYLYVL 307

Query: 91  -------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA 137
                        I P E+E++  QHP VE+ AV+G+P D +G+ P A VVP  +  V+ 
Sbjct: 308 GRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPN-DDPVSV 366

Query: 138 EEVKQFV 144
           EE++ F+
Sbjct: 367 EELQAFL 373

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 96.5 bits (240), Expect = 4e-24
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 17/132 (12%)

Query: 26  NAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
              ++ID   + ++  G+ GEL ++G +V   Y N+ +AT+E + D GWL TGDLA    
Sbjct: 326 CDYELIDENKN-KVEVGEVGELLIRGPNVMKEYWNRPDATEETIQD-GWLCTGDLARVDE 383

Query: 85  DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
           DG  +I              I P E+E +  +  DV +VAV+G  H  +GE+P A +V K
Sbjct: 384 DGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKK 443

Query: 131 PNSSVTAEEVKQ 142
            +S +  ++V +
Sbjct: 444 SSSVLIEKDVIE 455

Length = 496

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 96.3 bits (240), Expect = 5e-24
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 19/135 (14%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKG----DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
           +I D   +  LP G+ GE+C+KG     +F  Y    +AT ++L+ DGWLHTGD  Y   
Sbjct: 352 EIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE 410

Query: 85  DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
           +G  +               +S  ELE+I   HP ++D+ V+GI   +  E   A VV  
Sbjct: 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLN 470

Query: 131 PNSSVTAEEVKQFVE 145
              +++ EE   F E
Sbjct: 471 EGETLSEEEFFAFCE 485

Length = 517

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 94.5 bits (235), Expect = 2e-23
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 15/132 (11%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K++D  T   LP G  GEL ++G  V  GY N  +AT+  +D DGWL TGD+AY   DG 
Sbjct: 386 KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGY 445

Query: 88  HFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            +I              I+P +LE++   HP++ D AV  +P    GE+P A VV +  S
Sbjct: 446 LYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS 505

Query: 134 SVTAEEVKQFVE 145
           +++ E V  +V 
Sbjct: 506 TLSQEAVINYVA 517

Length = 560

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 92.8 bits (231), Expect = 8e-23
 Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 18/131 (13%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           IK++D   +  +P G+ GEL +KG  V LGY  + EAT E++ D GWL TGD+A    +G
Sbjct: 389 IKLVDDDGNE-VPPGEPGELWVKGPQVMLGYWQRPEATDEVIKD-GWLATGDIAVMDEEG 446

Query: 87  THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
              I+               P E+E +   HP V +VA +G+P +V GE     VV K +
Sbjct: 447 FLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKK-D 505

Query: 133 SSVTAEEVKQF 143
            S+T EE+   
Sbjct: 506 PSLTEEELITH 516

Length = 560

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 90.5 bits (225), Expect = 5e-22
 Identities = 48/127 (37%), Positives = 63/127 (49%), Gaps = 16/127 (12%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            KI D  T   LP G  GE+ ++    L GY NK EAT E L D GWLHTGD+      G
Sbjct: 398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRD-GWLHTGDIGKIDEQG 456

Query: 87  -THFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             H++             + P E+E++  QHP V   AV+G P    G++P A V  KP 
Sbjct: 457 FLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPG 516

Query: 133 SSVTAEE 139
           + +TA  
Sbjct: 517 ADLTAAA 523

Length = 567

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 90.3 bits (224), Expect = 6e-22
 Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 17/132 (12%)

Query: 27  AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           A+K+ID     +LP G+ GELC+KG  V  GY  + EAT E LD +GW  TGD+A   PD
Sbjct: 396 ALKVIDD-DGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD 454

Query: 86  G--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
           G              + F + P E+E +   HP V + A IG+P +  GE     VV + 
Sbjct: 455 GFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVAR- 513

Query: 132 NSSVTAEEVKQF 143
           +  ++ EE+K +
Sbjct: 514 DPGLSVEELKAY 525

Length = 562

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 16/122 (13%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
           LP G+TGE+C+ G  VF GY N  EA  +   D GW  TGDL +    G  +I       
Sbjct: 361 LPPGETGEICVIGPAVFAGYYNNPEANAKAFRD-GWFRTGDLGHLDARGFLYITGRASDM 419

Query: 91  -IS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
            IS      P E+E     HP V +VAV+G+P  V+GE+  AV V +  + V   E+  +
Sbjct: 420 YISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAW 479

Query: 144 VE 145
           ++
Sbjct: 480 LD 481

Length = 528

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 87.0 bits (216), Expect = 5e-21
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 18/104 (17%)

Query: 25  HNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWL--HTGDLAY 81
              +K++D      +P G+ GELC++G  V  GY N  E T E   +DGW    TGDL  
Sbjct: 310 GVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGR 368

Query: 82  RLPDGTHFI--------------ISPCELESIFRQHPDVEDVAV 111
              DG   I              I P E+E++  +HP V + AV
Sbjct: 369 WDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 86.1 bits (214), Expect = 7e-21
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 20/122 (16%)

Query: 42  GKTGELCLKGD-VFLGYRNKVEATKEMLD-----DDGWLHTGDLAYRLPDGTHFI----- 90
           G+ GEL  +G  V  GY N  EAT E L       +  L+TGDL     +G  +      
Sbjct: 195 GEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKD 254

Query: 91  ---------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
                    +SP E+E +   HP V + AVIG+P  + G+   AVVV     S+  +E+ 
Sbjct: 255 DMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELL 314

Query: 142 QF 143
           + 
Sbjct: 315 KH 316

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.8 bits (213), Expect = 3e-20
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 21/134 (15%)

Query: 28  IKIIDPVT-SVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           ++I+DP      +PDG+ GEL ++G  VF GY N+ E T +   D GW  TGD+     D
Sbjct: 400 VRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLD-GWFRTGDVVVMEED 458

Query: 86  GTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
           G  FI                + P E+E + R+HP VED AV+G+P +   E   A VV 
Sbjct: 459 G--FIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVL 516

Query: 130 KPNSSVTAEEVKQF 143
           +P +++  E ++ +
Sbjct: 517 EPGAALDPEGLRAY 530

Length = 573

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 85.3 bits (212), Expect = 3e-20
 Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 15/128 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +++ DP T  +LP G+ G + +KG +VF GY    E T E    DG+  TGDL      G
Sbjct: 332 LRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERG 391

Query: 87  --------THFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
                      IIS      P E+E    + P V + AVIG+PH  FGE   AVVVPKP 
Sbjct: 392 YVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPG 451

Query: 133 SSVTAEEV 140
           +++    +
Sbjct: 452 AALDEAAI 459

Length = 504

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 18/133 (13%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           ++++D      LP G+ G L ++G   F GY  + +      D DGW  TGDLA    DG
Sbjct: 377 VRVVDA-DGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGDLARIDADG 433

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
              I              I   E+E++  +HP +  VA++  P +  GE   A VVP+P 
Sbjct: 434 YIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG 493

Query: 133 SSVTAEEVKQFVE 145
            S+  EE+ +F++
Sbjct: 494 QSLDFEEMVEFLK 506

Length = 547

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 84.1 bits (208), Expect = 9e-20
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 40  PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIIS------ 92
           P G  GEL L+G  +  GY  + +AT      DGW  TGD+A R  DG  +++       
Sbjct: 328 PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMF 387

Query: 93  --------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
                   P E+E++   HP + + AV+G+    +GE+    +VP   + +  E ++  +
Sbjct: 388 ISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHL 447

Query: 145 E 145
            
Sbjct: 448 S 448

Length = 488

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 22/117 (18%)

Query: 33  PVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI- 90
           P   V++ D   GE+ ++G  V  GY    EAT E   +DGW  TGDL     DG   I 
Sbjct: 411 PGIEVKIAD--DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVIT 468

Query: 91  --------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
                         I+P  +ES   + P +E + V+G           A++VP  ++
Sbjct: 469 GRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKK----FLVALIVPDFDA 521

Length = 613

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 20/132 (15%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEM---LDDDGWLHTGDLAYRLP 84
           ++IDP T  +LP G+ GE+ + G  VF GY N+ EAT E    +D   +  TGDL     
Sbjct: 369 RVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE 428

Query: 85  DGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
           +G  FI                P E+E++  +HP +++  VI  P    GE   AVVV +
Sbjct: 429 EGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLR 488

Query: 131 PNS--SVTAEEV 140
           P +    T EE+
Sbjct: 489 PEARGKTTEEEI 500

Length = 546

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 20/133 (15%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI      V +P  + GE+ +KG +V  GY N+ +AT+E   D GW  TGD+ Y   +G
Sbjct: 318 LKIEK--DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQD-GWFKTGDIGYLDEEG 374

Query: 87  THF--------IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             +        IIS      P E+E +   HP V +  V+G+P D +G++P A VV   +
Sbjct: 375 FLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVV--KS 432

Query: 133 SSVTAEEVKQFVE 145
             VT EE++ F E
Sbjct: 433 GEVTEEELRHFCE 445

Length = 483

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 81.7 bits (202), Expect = 5e-19
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           ++  DP     LPDG++GE+ ++   +  GY +  +AT   L DDG+  TGDL Y   DG
Sbjct: 361 VRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Query: 87  TH--------------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
                           F+++P E+E      P V    V+G   D     P A V+P   
Sbjct: 421 QFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTV-PVAFVIPTDG 479

Query: 133 SSVTAEEVK 141
           +S     + 
Sbjct: 480 ASPDEAGLM 488

Length = 540

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 81.9 bits (203), Expect = 6e-19
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 16/117 (13%)

Query: 39  LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
           +  G+ GE+  +   + LGY +  E T E     GW H+GDL     +G   +       
Sbjct: 362 VAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRG-GWFHSGDLGVMDEEGYITVVDRKKDM 420

Query: 91  -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEV 140
                  ++  E+E     HP V +VAVIG+P   + E   AVVVPK  ++VT +E+
Sbjct: 421 IKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDEL 477

Length = 523

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 81.6 bits (202), Expect = 6e-19
 Identities = 45/121 (37%), Positives = 60/121 (49%), Gaps = 19/121 (15%)

Query: 41  DGKT-GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI-------- 90
           DG+T GEL ++G  +F GY N+ +AT      DGW  TGD+A   PDG H I        
Sbjct: 317 DGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDL 376

Query: 91  -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
                  I   E+E+    HP V + AV+G+P D  G+   A VV      V A+E+  F
Sbjct: 377 IKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVV--GADDVAADELIDF 434

Query: 144 V 144
           V
Sbjct: 435 V 435

Length = 471

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 81.6 bits (202), Expect = 6e-19
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 20/135 (14%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +K++D     ++ DG+ GEL ++GD    GY N+ E T+E      W  TGD  YR  DG
Sbjct: 341 VKLVDEDGE-EVADGEIGELWVRGDSSAAGYWNRREKTRETFVG-EWTRTGDKYYRDEDG 398

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
            ++               +SP E+E    QHP V + AV+G   +     P A VV K  
Sbjct: 399 YYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDG 458

Query: 133 ---SSVTAEEVKQFV 144
              S     E+K FV
Sbjct: 459 YQPSPELETELKDFV 473

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 81.1 bits (201), Expect = 9e-19
 Identities = 50/140 (35%), Positives = 68/140 (48%), Gaps = 20/140 (14%)

Query: 21  HFQEHNAIKIIDPVTSVQLP-DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTG 77
             QE   + ++DP T   +P DG+T GE+  +G+ V  GY    +AT+E     GW HTG
Sbjct: 365 PLQE--GVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAG-GWFHTG 421

Query: 78  DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
           DLA   PDG   I              IS  E+E +  +HP V   AV+  P   +GE+P
Sbjct: 422 DLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVP 481

Query: 124 AAVVVPKPNSSVTAEEVKQF 143
            A V  K  +S T EE+   
Sbjct: 482 CAFVELKDGASATEEEIIAH 501

Length = 545

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 29/148 (19%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD---VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
           + ++D      +P G+ GE+ +K     +FLGY N  EAT      D WL TGDL  R  
Sbjct: 271 VAVVDD-AGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-WLLTGDLGRRDA 328

Query: 85  DG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
           DG              + + I P E+E    +HP V + AV+G+P    GE+  A VV  
Sbjct: 329 DGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLA 388

Query: 131 PN---SSVTAEEVKQFV-------EFPR 148
                S   A E+++ V       E+PR
Sbjct: 389 EGVEPSDELATELQELVKSRLAAHEYPR 416

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 80.2 bits (198), Expect = 2e-18
 Identities = 47/134 (35%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           IK++D      LP G  GE   +G +VF+GY ++ E T   LD++GW ++GDL      G
Sbjct: 366 IKVVDEARK-TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAG 424

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
              I              IS  E+E I  QHP + D  V+ +P +  GE   A VV K  
Sbjct: 425 YIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAP 484

Query: 133 -SSVTAEEVKQFVE 145
             S+T EEV  F  
Sbjct: 485 HHSLTLEEVVAFFS 498

Length = 547

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 78.9 bits (195), Expect = 4e-18
 Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 42  GKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI---------- 90
           G+ G L ++G  VF GY N          +DGWL+TGDL     DG  ++          
Sbjct: 204 GEVGVLAIRGPNVFPGYLNDAHN-AGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIR 262

Query: 91  ----ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
               I P  +E    +HP V   A +G P    GELP A V  KP ++VT  E+  FV
Sbjct: 263 GGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFV 320

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 79.2 bits (195), Expect = 4e-18
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 16/118 (13%)

Query: 39  LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIIS----- 92
           L  G+ GELC+KG  V  GY  + E T +++D DGWLHTGD+A     G  +I+      
Sbjct: 403 LAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDM 462

Query: 93  ---------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
                    P E+E +    P V +VA +G+P +  GE+   V+V K + ++TAE+VK
Sbjct: 463 ILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIV-KKDPALTAEDVK 519

Length = 560

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 78.7 bits (195), Expect = 6e-18
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 20/117 (17%)

Query: 33  PVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI- 90
           P+  V++   + GE+ ++G  V  GY    EAT E LD+DGWLHTGD+     DG   I 
Sbjct: 271 PLPGVEVRIAEDGEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVIT 330

Query: 91  --------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
                         I+P  +E+  +  P +    V+G           A++V  P +
Sbjct: 331 DRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDR----PYLTALIVLDPEA 383

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 18/119 (15%)

Query: 42  GKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI---------- 90
            + G LC+ G +VF GY       K +  +DGWL+TGDL     DG  ++          
Sbjct: 415 DEVGVLCIAGPNVFSGYLE-AAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIR 473

Query: 91  ----ISPCELESIFRQHPDVEDVAVIGIPHDVF-GELPAAVVVPKPNSSVTAEEVKQFV 144
               I P  +E    +HP V   A +G P D   GELP A V  KP +S T  E+  F 
Sbjct: 474 GGHNIDPAAIEEALLRHPAVALAAAVGRP-DAHAGELPVAYVQLKPGASATEAELLAFA 531

Length = 632

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 19/104 (18%)

Query: 45  GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII------------ 91
           GE+C++G +VF GY    E T E  D+DGW HTGD+   LPDGT  II            
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQG 410

Query: 92  ---SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
              +  +LE+I++  P V+ + V G     F     A+VVP  +
Sbjct: 411 EYVALEKLENIYKSSPLVDQICVYGDSLKSF---LVAIVVPDED 451

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 76.2 bits (188), Expect = 5e-17
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 30/140 (21%)

Query: 39  LPDGKTGELCLKGD-----VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG------- 86
           LP G+ G++ ++       +F GY    E T+  +  D W  TGD A +  DG       
Sbjct: 270 LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD-WYLTGDRAIKDEDGYFWFVGR 328

Query: 87  -------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN---SSVT 136
                  + + I P E+ES   +HP V + AV+G P  V GE+  A VV  P    S   
Sbjct: 329 ADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEEL 388

Query: 137 AEEVKQFV-------EFPRK 149
           A+E+++ V       ++PR+
Sbjct: 389 AKELQEHVKKRTAPYKYPRE 408

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 75.7 bits (186), Expect = 7e-17
 Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 17/124 (13%)

Query: 36  SVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT------ 87
              LP+G+ GEL +      F GY N+ +AT E L D GW  T D+A   P GT      
Sbjct: 339 DEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQD-GWYRTSDVAVVDPSGTVRILGR 397

Query: 88  --HFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEE 139
               IIS      P E+E +  + P V +V VIG+P + +G+   A VVP+   +++A+ 
Sbjct: 398 VDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSADA 457

Query: 140 VKQF 143
           +  F
Sbjct: 458 LDTF 461

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 19/136 (13%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGDVF-LGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           ++I+D     +LP G+ G +  + D +   Y N  E T    +  GW+  GD+ Y   DG
Sbjct: 325 VRILDE-DGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDG 383

Query: 87  --------THFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
                   +  IIS      P E+E++   HP V DVAV G+P +  GE   AVV P   
Sbjct: 384 YLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADG 443

Query: 133 ---SSVTAEEVKQFVE 145
                  A E+  ++ 
Sbjct: 444 ADAGDALAAELIAWLR 459

Length = 502

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 23/136 (16%)

Query: 30  IIDPVTSVQLP-DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           ++D  T   +P DGKT GE+ ++G+ V  GY    +A +E   + GW H+GDL  + PDG
Sbjct: 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFAN-GWFHSGDLGVKHPDG 444

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP- 131
              I              IS  E+E++   HP V + +V+  P + +GE P A V  KP 
Sbjct: 445 YIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPG 504

Query: 132 ----NSSVTAEEVKQF 143
               + +  AE++ +F
Sbjct: 505 VDKSDEAALAEDIMKF 520

Length = 567

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 22/138 (15%)

Query: 27  AIKIIDPVTSVQLPDGKTGELCLKGD---VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
           A++ +D   +        GEL ++     + L Y N  E  KE      +   GD A R 
Sbjct: 351 AVRRVDDEGNP--VPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRT-GDWAERD 407

Query: 84  PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
            DG  ++              I P E+ES+   HP V + AV+G+P    G++  A VV 
Sbjct: 408 EDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVL 467

Query: 130 KPNSSVT--AEEVKQFVE 145
                    AEE+++ V 
Sbjct: 468 AAGVEPNELAEEIRRHVA 485

Length = 528

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 28  IKIIDPVTSVQLPDGKT-GELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI D        DGKT G L ++G        +V+   E+LDDDG+  TGD+A     G
Sbjct: 367 MKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVDG--EILDDDGFFDTGDVATIDAYG 424

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
              I              IS  +LE++   HP V + AVIG+ H  + E P  +V  KP 
Sbjct: 425 YMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPG 484

Query: 133 SSVTAEEVKQFVE 145
            + T EE+ ++++
Sbjct: 485 ETATREEILKYMD 497

Length = 542

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            +++D      +P G  G+L ++G  +  GY N  E T+  L D GWL TGD   R  DG
Sbjct: 271 ARLVDESGRE-VPAGTVGDLWVRGPSLAPGYWNLPEKTQRTLRD-GWLRTGDRFSRDADG 328

Query: 87  THF--------------IISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP- 131
            +                +SP E+E+   +HP V + AV+ +P +       A VVP+P 
Sbjct: 329 WYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPG 388

Query: 132 --NSSVTAEEVKQFV 144
                +   ++ +F+
Sbjct: 389 EAIQQLLERDLHRFL 403

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 73.8 bits (181), Expect = 4e-16
 Identities = 53/154 (34%), Positives = 71/154 (46%), Gaps = 29/154 (18%)

Query: 5   VGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEA 63
            GLVG+S      TG   +      I+     + LP G  GE+ L+G  V  GY      
Sbjct: 354 TGLVGRS------TGAQIR------IVGS-DGLPLPAGAVGEVWLRGTTVVRGYLGDPTI 400

Query: 64  TKEMLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDV 109
           T     D GWL TGDL      G   I              ISP  +E +   HP+V + 
Sbjct: 401 TAANFTD-GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEA 459

Query: 110 AVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
           AV G+P  ++GE  AAV+VP+ ++  TAEE+ QF
Sbjct: 460 AVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQF 493

Length = 534

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 25/139 (17%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-----VFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
           + ++D     ++P    GE+ L        + LGY    E T       G+  TGD AYR
Sbjct: 262 VVLLDDE-GKEIPV-TEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRG-GYYRTGDKAYR 318

Query: 83  LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
             DG  +               ISP E+ES   +HP V + AV+  P  +   +P A +V
Sbjct: 319 DEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIV 378

Query: 129 PKPN---SSVTAEEVKQFV 144
            KP    S   A E+   V
Sbjct: 379 LKPGYEPSRELALELFAHV 397

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 72.4 bits (177), Expect = 1e-15
 Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 16/130 (12%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG- 86
            I+   T   LP G+ GE+ +KG  +  GY NK E T  +L D GWLHTGD+ Y   DG 
Sbjct: 388 MIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQD-GWLHTGDVGYMDEDGF 446

Query: 87  -------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
                        + F + P E+E +  +H  V++V  IG+P    GE   A VV K  +
Sbjct: 447 FYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT 506

Query: 134 SVTAEEVKQF 143
             + EE+ QF
Sbjct: 507 ECSEEELNQF 516

Length = 563

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 70.6 bits (173), Expect = 4e-15
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 17/122 (13%)

Query: 39  LPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDG--------THF 89
           +P G+ GE+  +    + GY N  EAT E     GW H+GDL  +  +G           
Sbjct: 366 VPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG-GWFHSGDLVRQDEEGYVWVVDRKKDM 424

Query: 90  IISP-----C-ELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP-NSSVTAEEVKQ 142
           IIS      C E+E++   HPD+ +VAVIG   + +GE+P AV   +  ++++T E++ +
Sbjct: 425 IISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAE 484

Query: 143 FV 144
           F+
Sbjct: 485 FL 486

Length = 542

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 70  DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 115
              W+H GD A    DG  +I              + P E+ES+   HP V + A IG+P
Sbjct: 334 PGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVP 392

Query: 116 HDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
             V GE     VV KP  + +A    +  +
Sbjct: 393 DPVKGEAIVCFVVLKPGVTPSAALEAELAD 422

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)

Query: 33  PVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI- 90
           P+  V+L   + GE+ ++   +  GY    E T E   +DGWLHTGD      DG   I 
Sbjct: 331 PIPGVELKISEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKIT 390

Query: 91  --------------ISPCELESIFRQHPDVEDVAVIG 113
                         ++P  +E++   +P VE V V+G
Sbjct: 391 GRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVG 427

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 69.9 bits (172), Expect = 9e-15
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 23/129 (17%)

Query: 38  QLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDD----G--WLHTGDLAYRLPDGT-HF 89
            +P G  GEL + GD + LGY N+ E T E    D    G     TGDLA   PDG   F
Sbjct: 317 PVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEF 376

Query: 90  I-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136
           +             I   E+E    QHP V + AV+        +   A VV +   ++ 
Sbjct: 377 LGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARG--ALD 434

Query: 137 AEEVKQFVE 145
           A E++  + 
Sbjct: 435 AAELRAHLA 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 20/132 (15%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           I+I+D     ++P G+ G + ++ D  F GY +   +TK+    DG++ +GD+ Y   +G
Sbjct: 376 IRILDQDFR-EVPTGEVGTIFVRNDTQFDGYTSG--STKDF--HDGFMASGDVGYLDENG 430

Query: 87  THFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             F++               P E+E     HPDV + AVIG+  + +G+  AA VV KP 
Sbjct: 431 RLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPG 490

Query: 133 SSVTAEEVKQFV 144
           +S T E +KQ V
Sbjct: 491 ASATPETLKQHV 502

Length = 537

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 40  PDGKTGELCLKGD---VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH-FI----- 90
             G+ GEL LK     +F GY    E       D GW  TGDLAYR  DG   F+     
Sbjct: 286 GPGQVGELALKPGWPSMFRGYLGNEERYASSFVD-GWYLTGDLAYRDEDGYFWFVGRADD 344

Query: 91  --------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
                   + P E+ES   +HP V +  VIG P  V GE+  A V  +P    + E  ++
Sbjct: 345 VIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRRE 404

Query: 143 FVEFPRK 149
            + F R+
Sbjct: 405 LLTFARQ 411

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 68.3 bits (167), Expect = 2e-14
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 22/149 (14%)

Query: 11  SKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD 69
           S+++    G+ F  HN    I      ++  G+ G + +K    F+GY       +E L+
Sbjct: 302 SERRPNSVGRPF--HNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARE-LN 358

Query: 70  DDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIP 115
            DGW+   D+ Y   +G  +I              I P E+ES+  +HP V+++ VIG+P
Sbjct: 359 ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVP 418

Query: 116 HDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
              +GE P A++      S T +++K F 
Sbjct: 419 DSYWGEKPVAII----KGSATKQQLKSFC 443

Length = 487

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 68.2 bits (168), Expect = 3e-14
 Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 22/127 (17%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLH-------TGDLAYRLPDGT-HF 89
           +P G  GEL + G  V  GY N+ E T E    D +         TGDLA  LPDG   F
Sbjct: 286 VPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEF 345

Query: 90  I-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136
           +             I   E+E+    HP V +  V+        +   A VVP   + + 
Sbjct: 346 LGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELD 405

Query: 137 AEEVKQF 143
           A E++ F
Sbjct: 406 AAELRAF 412

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 68.0 bits (166), Expect = 3e-14
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 18/152 (11%)

Query: 9   GKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEM 67
           G+  +K   TG+    H  I+I D      LP    GE+C++G  V  GY    E T E 
Sbjct: 312 GREIEKIGSTGRAL-AHVEIRIADGAGRW-LPPNMKGEICMRGPKVTKGYWKDPEKTAEA 369

Query: 68  LDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIG 113
              D W  +GD+ Y   +G  ++              I+  E+E +  + P+V + AVIG
Sbjct: 370 FYGD-WFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIG 428

Query: 114 IPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
           +  D +GE   AVVV  P +++T E + +   
Sbjct: 429 VHDDRWGERITAVVVLNPGATLTLEALDRHCR 460

Length = 497

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 39  LPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDG-WLHTGDLAYRLPDG--------THF 89
           LP G+ G +  +G     Y N    T E    DG W   GD+ Y   DG           
Sbjct: 348 LPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFM 407

Query: 90  IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
           IIS      P E E++   HP V D AV G+P++  GE   AVV P            + 
Sbjct: 408 IISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAEL 467

Query: 144 VEFPR 148
           + F R
Sbjct: 468 IAFCR 472

Length = 511

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 67.0 bits (164), Expect = 9e-14
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 16/120 (13%)

Query: 39  LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG----------- 86
           LP G+ GE+C++G  V  GY N+ + T +++  DG+  TGD+      G           
Sbjct: 401 LPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDM 460

Query: 87  ---THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
              + F + P E+E +   HP V +VA +G+P +  GE     VV K + ++T E+VK F
Sbjct: 461 ILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKK-DPALTEEDVKAF 519

Length = 557

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 66.9 bits (163), Expect = 1e-13
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 22/135 (16%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGY--RNKVEATKEMLDDDGWLHTGDLAYRLP 84
           +K+ID     +L  G+TG L ++G   F GY  R  + +T    D +GW  TGDLA++  
Sbjct: 375 VKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST----DAEGWFDTGDLAFQDA 429

Query: 85  DGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
           +G   I              I   E+E++  QHP V  VA++  P +  GE   AVVVPK
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489

Query: 131 PNSSVTAEEVKQFVE 145
           P  ++    +  F++
Sbjct: 490 PGCTLDFAAMVAFLK 504

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 36/133 (27%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query: 24  EHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKE---MLDDDGWLHTGDL 79
                 I+D      +P G+ GEL + G  V  GY N  E T +     +   W  TGDL
Sbjct: 279 PGLRALILDE-DGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDL 337

Query: 80  AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
            Y   DG                  I   E+E+  R  P VE+  V+ +P         A
Sbjct: 338 VYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVA 397

Query: 126 VVVPKPNSSVTAE 138
            VV K  +  T  
Sbjct: 398 FVVGKEGALDTKA 410

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 23/157 (14%)

Query: 9   GKSKQKATLTGKH-FQEHNAIKIIDPVTSVQLP-DGKTGELCLKGDVFLGYRNKVEATKE 66
           G   + A  TG   F       ++D   +   P  G+ G +  +G + LGY    E T E
Sbjct: 340 GTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYKDPEKTAE 399

Query: 67  ML---DDDGWLHTGDLAYRLPDGTHFI----------------ISPCELESIFRQHPDVE 107
                D   +   GD A    DGT  I                + P E+E   + HPDV 
Sbjct: 400 TFPTIDGVRYAIPGDRARVEADGT--ITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVA 457

Query: 108 DVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
           D  V+G+P + +G+   AVV  +  +     E++   
Sbjct: 458 DALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHC 494

Length = 533

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 20/125 (16%)

Query: 40  PDGKTGELCLKGD-VFLGYRNKVEATKE--MLDDDG--WLHTGDLAYRLPDGT-HFI--- 90
           PD   GEL + G  V LGY    E T E  +    G     TGDL    PDGT  F+   
Sbjct: 322 PDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRA 381

Query: 91  ----------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEV 140
                     +   E+E+   +HP V+   V+ +       L AA VV +  ++V A  +
Sbjct: 382 DHQVKIRGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKAL-AAFVVAEDGAAVDAAVL 440

Query: 141 KQFVE 145
           +  + 
Sbjct: 441 RAALA 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 64.7 bits (157), Expect = 5e-13
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 17/120 (14%)

Query: 41  DGKT-GELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI-------- 90
           DGKT GE+ +KG   + GY    +AT E     GWL+TGD+    PDG   I        
Sbjct: 388 DGKTMGEIVIKGSSIMKGYLKNPKATSEAFKH-GWLNTGDVGVIHPDGHVEIKDRSKDII 446

Query: 91  ------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
                 IS  E+E++  ++P V + AV+ +PH  +GE P A VV +   +   + V + V
Sbjct: 447 ISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLV 506

Length = 579

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 21/133 (15%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGDV----FLGYRNKVEATKEML--DDDGWLHTGDLAY 81
           ++++D  T  +L  G+ G + +K  +     L      E  K++      G+  TGD  Y
Sbjct: 412 VQVLDE-TGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGY 470

Query: 82  RLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
           +  DG  F++              S  E+E    +HPDV + AV+G+  ++ G++P  +V
Sbjct: 471 KDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLV 530

Query: 128 VPKPNSSVTAEEV 140
           V K +  + A+++
Sbjct: 531 VLKDDCKIDADQL 543

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 29/144 (20%)

Query: 28  IKIIDPVTSVQLP------------DGKTGELC-LKG-DVFLGYRNKVEATKEMLDDDGW 73
           + I+DP T  + P            D   GEL    G   F GY N  EA  E +   G 
Sbjct: 324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRG-GV 382

Query: 74  LHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVF 119
             +GDLAYR  DG  +               +    +E I  ++PD  +VAV  +P  V 
Sbjct: 383 YWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVV 442

Query: 120 GELPAAVVVPKPNSSVTAEEVKQF 143
           G+   A +V  P +    +   +F
Sbjct: 443 GDQVMAALVLAPGAKFDPDAFAEF 466

Length = 529

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 18/133 (13%)

Query: 28  IKIIDPVTSVQLPDGKT-GELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI+         DGK  G+L ++G   +    + +A+      DGW  TGD+A    DG
Sbjct: 367 MKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPL---VDGWFPTGDVATIDADG 423

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
              I              IS  ++E++   HP V + A I   H  + E P  VVV +P 
Sbjct: 424 FMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPG 483

Query: 133 SSVTAEEVKQFVE 145
           + VT EE+  F E
Sbjct: 484 AEVTREELLAFYE 496

Length = 539

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 25/120 (20%)

Query: 53  VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELES 98
            F GY +  E T E++    W  TGDL  R  DG  +               I P ++ES
Sbjct: 299 WFSGYWDDPEKTAELIAG-RWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVES 357

Query: 99  IFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN---SSVTAEEVKQFV-------EFPR 148
              +HP V + AV+G+P  + GE+  A VV K     S   AEE++ FV        +PR
Sbjct: 358 ALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPR 417

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 17/123 (13%)

Query: 39  LPDGKTGELCLKGDVF--LGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------ 90
           LP G+ GE+  +        Y NK E   E +D  G++ +GD+ Y   DG  F+      
Sbjct: 345 LPQGEIGEIYSRIAGNPDFTYHNKPEKRAE-IDRGGFITSGDVGYLDADGYLFLCDRKRD 403

Query: 91  --------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
                   I P E+E++    P V D AV GIP   FGE   AVV P+P +++   +++ 
Sbjct: 404 MVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRA 463

Query: 143 FVE 145
            ++
Sbjct: 464 QLK 466

Length = 509

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 23/123 (18%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEM------LDDDGWLHTGDLA 80
           ++I+DP T   LPDG+ GE+ ++G  V  GY N+ EAT E        D+ GWL TGDL 
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

Query: 81  YRLPDGTHFI--------------ISPCELE-SIFRQHPDVEDVAVIGIPHDVFGELPAA 125
           +   DG  ++                P ++E ++ R HP +   A      D  GE    
Sbjct: 426 FLH-DGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLV 484

Query: 126 VVV 128
           VV 
Sbjct: 485 VVA 487

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 26/130 (20%)

Query: 38  QLPDGKTGELCLKGD-VFLGYRNKVEATKEML-----DDDG--WLHTGDLAYRLPDGT-- 87
            +P G  GEL + GD V  GY  + E T E       DD G     TGDL    PDG   
Sbjct: 278 PVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLE 337

Query: 88  ------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNS 133
                        F I   E+E+  R HP V D  V+ +  +  G+  L  A VVPK  +
Sbjct: 338 YLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVV-VREEGPGDQRL-VAYVVPKAGA 395

Query: 134 SVTAEEVKQF 143
           +  AE ++  
Sbjct: 396 APDAEALRAA 405

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 19/124 (15%)

Query: 38  QLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT-HFI------ 90
           ++P G+ G L ++G     Y +     + +   DGW  TGD+  +  DG  H++      
Sbjct: 333 EVPRGEAGRLAVRGPTGCRYLDDERQQEYV--RDGWNVTGDIFRQDEDGYFHYVARSDDM 390

Query: 91  -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN---SSVTAEEV 140
                  I+  E+E     HPDV + AVIG+P +  G++  A +V +     + + AE +
Sbjct: 391 IVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERL 450

Query: 141 KQFV 144
           + FV
Sbjct: 451 QDFV 454

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 45  GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG--------THFIIS--- 92
           GE+ +KG ++  GY  + E T    +  GW +TGD+     +G           IIS   
Sbjct: 293 GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGE 351

Query: 93  ---PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
              P E+E++  QHP +++  V+  P   +G++P A +V
Sbjct: 352 NIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV 390

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 20/130 (15%)

Query: 37  VQLPDGKTGELCLKGD---VFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT-HFI- 90
            +LPDG+ GEL L+ D    F  GY    E T E   +  W HTGD   R  DG   F+ 
Sbjct: 362 QELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNL-WFHTGDRVVRDADGWFRFVD 420

Query: 91  ------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE 138
                       IS  E+E +   HP V   AV  +P ++  +   A VV +  +++   
Sbjct: 421 RIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPV 480

Query: 139 EVKQFVEFPR 148
            + +  E PR
Sbjct: 481 ALVRHCE-PR 489

Length = 542

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 19/122 (15%)

Query: 38  QLPDGKTGEL-CLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHF------- 89
           ++P G  G +    G  F GY +     K+++D  G L +GD+ Y   DG  F       
Sbjct: 396 EVPRGVVGRIFVGNGFPFEGYTDG--RDKQIID--GLLSSGDVGYFDEDGLLFVDGRDDD 451

Query: 90  -IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
            I+S      P E+E +   HPDV + AVIG+  + FG+   A VV  P +++  + +K 
Sbjct: 452 MIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKD 511

Query: 143 FV 144
           +V
Sbjct: 512 YV 513

Length = 549

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 19/149 (12%)

Query: 14  KATLTGKHFQEHNAIKIIDPVTSVQLPD-GKTGELCLKGDVFLGYRNKVEATKEML---D 69
            A+ TGK     +   ++D   S   P  G+ G +   G V LGY    E T +     D
Sbjct: 185 GASATGKFELGPDT-VVLDEDGSEVPPGSGEVGWIARGGRVPLGYYKDPEKTAKTFREID 243

Query: 70  DDGWLHTGDLAYRLPDGTHFII---SPC-----------ELESIFRQHPDVEDVAVIGIP 115
              +   GD A    DGT  ++   S C           E+E   + HPDV D  V+G+P
Sbjct: 244 GVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVP 303

Query: 116 HDVFGELPAAVVVPKPNSSVTAEEVKQFV 144
            + +G+   AVV  +  + +   E++   
Sbjct: 304 DERWGQRVVAVVQLRAGAGLDLAELRDHC 332

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 61.4 bits (149), Expect = 9e-12
 Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 20/103 (19%)

Query: 45  GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII---------SPC 94
           GE+C++G  +F GY    E T+E++ D GW HTGD+   LP+G   II         S  
Sbjct: 466 GEICVRGKCLFSGYYKNPELTEEVMKD-GWFHTGDIGEILPNGVLKIIDRKKNLIKLSQG 524

Query: 95  E------LESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
           E      LE+++ Q+P VED+ V G   D F  +  AVVVP  
Sbjct: 525 EYVALEYLENVYGQNPIVEDIWVYG---DSFKSMLVAVVVPNE 564

Length = 660

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 16/76 (21%)

Query: 45  GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIIS----------- 92
           GE+ L+G  +F GY  + E T+E+LD+DGW HTGD+     +GT  II            
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLG 567

Query: 93  ---PCE-LESIFRQHP 104
                E LE+++ Q+ 
Sbjct: 568 EYIALEALEALYGQNE 583

Length = 700

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 23/97 (23%)

Query: 38  QLPDGKTGELCLKGD-VFLGYRNKVEATKE-MLDDDGWL-------HTGDLAYRLPDGT- 87
            +P G  GEL + G  V  GY N+ E T E  + D            TGDL   LPDG  
Sbjct: 313 PVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNL 372

Query: 88  HFI-------------ISPCELESIFRQHPDVEDVAV 111
            F+             I   E+E+   +HP V +  V
Sbjct: 373 EFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 45  GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI 90
           GE+C+ G  VF+GY N  E T+E +D+DGWLH+GDL +   DG  +I
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYI 437

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 27  AIKIIDPVTSVQLPDGKTGELCLK--GDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
           A+   D   ++   D   GEL        F GY N  EAT E +   G   +GDLAYR  
Sbjct: 334 AVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRH-GMYWSGDLAYRDA 392

Query: 85  DGTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
           DG  +I                +S   +E I  +HP +  VAV  +P +  G+   A +V
Sbjct: 393 DG--WIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALV 450

Query: 129 PKPNSSVTAEEVKQF 143
            +  ++   +    F
Sbjct: 451 LRDGATFDPDAFAAF 465

Length = 540

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 27/128 (21%)

Query: 45  GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII------------ 91
           GE+C++G  +F GY      T+E++D+DGWLHTGD+   LP G   II            
Sbjct: 459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 518

Query: 92  ---SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN--------SSVTAEEV 140
              +P ++E+++ +   V    V G   D       AVVV  P           +  E++
Sbjct: 519 EYIAPEKIENVYAKCKFVAQCFVYG---DSLNSSLVAVVVVDPEVLKAWAASEGIKYEDL 575

Query: 141 KQFVEFPR 148
           KQ    PR
Sbjct: 576 KQLCNDPR 583

Length = 651

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 22/142 (15%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
           I IIDP        G+ GE+ ++        +F+GY    E T E+  D G+ HTGD A+
Sbjct: 364 IDIIDPDGK-SCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHD-GYYHTGDTAW 421

Query: 82  RLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
              DG              + + I P E+ES   QHP V + AV G+P  + G++  A +
Sbjct: 422 MDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATI 481

Query: 128 VPKPNSSVTAEEVKQFVEFPRK 149
           V       + E  K+  +  +K
Sbjct: 482 VLTKGYEPSEELKKELQDHVKK 503

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 17/91 (18%)

Query: 72  GWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHD 117
           G+  TGD A R  DG ++I              +   E+ES    HP V + AV+G P +
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522

Query: 118 VFGELPAAVVVPKPN---SSVTAEEVKQFVE 145
           V GE   A V  K     S    +E+K+ V 
Sbjct: 523 VKGEAIYAFVTLKDGVEPSDELRKELKKHVR 553

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 23/129 (17%)

Query: 40  PDGKTGELCLKGDV---FLGYRNKVEATKEMLDD-----DGWLHTGDLAYRLPDG-THFI 90
           P G+ G L  +      F GY +     K++L D     D + +TGDL  R   G  +F+
Sbjct: 278 PPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFV 337

Query: 91  -------------ISPCELESIFRQHPDVEDVAVIGIP-HDVFGELPAAVVVPKPNSSVT 136
                        +S  E+E +  +HP VE+  V G+      G    A +   P ++  
Sbjct: 338 DRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFD 397

Query: 137 AEEVKQFVE 145
            +     ++
Sbjct: 398 PQAFAAHLD 406

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 19/137 (13%)

Query: 24  EHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYR 82
           E + + + DP  +  LP G+ GEL ++G +V  GY N+ E + E    D +L TGD+ Y 
Sbjct: 375 ELDVVSLDDP--TKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYM 431

Query: 83  LPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
             DG  F++               P  +E    +HP V++V VIGIP    GE   A V 
Sbjct: 432 DTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVK 491

Query: 129 PKPNSS-VTAEEVKQFV 144
            +P +   + +E++ F+
Sbjct: 492 LRPGAKPFSLDELRAFL 508

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 22/121 (18%)

Query: 37  VQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT-HF----- 89
           + +P  +TG + ++   + LGY        ++LD  G   T DL Y    G  H      
Sbjct: 294 ITIPANQTGNITIQAQSLALGY------YPQILDSQGIFETDDLGYLDAQGYLHILGRNS 347

Query: 90  --IIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
             II+      P E+E+       V+DV V+G+P   +GE+  A+ VPK + S++ EE+K
Sbjct: 348 QKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPK-DPSISLEELK 406

Query: 142 Q 142
            
Sbjct: 407 T 407

Length = 452

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 17/145 (11%)

Query: 15  ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGW 73
            T  G+     + ++++D   +   P G+TG L  +G   F GY    E      D +G+
Sbjct: 350 FTTQGRPMSPDDEVRVVDDHGNPVAP-GETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGF 408

Query: 74  LHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVF 119
            +TGDL    P+G   +              I+  E+E++   HP V D A++ +P ++ 
Sbjct: 409 YYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELL 468

Query: 120 GELPAAVVVPKPNSSVTAEEVKQFV 144
           GE   A +V +   ++ A ++++F+
Sbjct: 469 GEKSCAFIVVRD-PALKAAQLRRFL 492

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 27/130 (20%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLH--------TGDLAYRLPDGT-- 87
           +P G  GEL + G  V  GY  + E T E    + +          TGDL  R  DG   
Sbjct: 289 VPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLE 348

Query: 88  ------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNS 133
                        F I   E+E+  R  P V + AV+    D  G+  L  A +V  P +
Sbjct: 349 YLGRIDDQVKVRGFRIELGEIEAALRSIPGVAE-AVVVAIGDAAGDRQL-VAYIVADPGA 406

Query: 134 SVTAEEVKQF 143
           ++  E+++  
Sbjct: 407 AIDIEDLRAR 416

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 22/126 (17%)

Query: 19  GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG 77
           GK    H  I+I +      LP+   G +C++G  +  GY    E+   +L  DGWL TG
Sbjct: 388 GKALPGH-EIEIRNEAGMP-LPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTG 444

Query: 78  DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVE--DVAVIGIPHDVFGE 121
           DL Y L DG  +I              I P ++E I  Q P++   D A   I  +  GE
Sbjct: 445 DLGYLL-DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GE 502

Query: 122 LPAAVV 127
               +V
Sbjct: 503 KIVLLV 508

Length = 579

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 16/120 (13%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
           +  G+ GEL  +G     GY    E      D DG+  +GDL  R PDG   +       
Sbjct: 380 VAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQ 439

Query: 91  -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
                  I+  E+E++  +HP V D A++ +P ++ GE   A +V K    + A ++++F
Sbjct: 440 INRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE-PPLRAAQLRRF 498

Length = 542

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 21/126 (16%)

Query: 39  LPDGKTGELCLKG---DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH-FI---- 90
           LP  + G L +K     +  G  N  E  +       W  +GD AY   DG   F     
Sbjct: 397 LPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAG-DWYVSGDSAYMDEDGYFWFQGRVD 455

Query: 91  ---------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE--- 138
                    + P E+ES   +HP V +  VIG P  V GE+  A V  +P    + E   
Sbjct: 456 DVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKE 515

Query: 139 EVKQFV 144
           E++ FV
Sbjct: 516 EIRGFV 521

Length = 570

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 34/145 (23%)

Query: 28  IKII----DPVTSVQ----LPDGKTGELCLKGDVFL-GYRNKVEATKE--MLDDDG--WL 74
           ++II     P+        L  G+ GE+ + G +    Y N+ EAT+   + D  G  W 
Sbjct: 363 VRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWH 422

Query: 75  HTGDLAY-----RL------------PDGTHFIISPCELESIFRQHPDVEDVAVIGIPHD 117
             GDL Y     RL              GT + I PCE   IF  HP V+  A++G+   
Sbjct: 423 RMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTI-PCE--RIFNTHPGVKRSALVGVGVP 479

Query: 118 VFGELPAAVVVPKPNSSVTAEEVKQ 142
              + P   V  +P  + +   + Q
Sbjct: 480 G-AQRPVLCVELEPGVACSKSALYQ 503

Length = 552

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 27  AIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
            I+I+D    V LPD   G + +KGD V  GY N  EATK+ +  DGWL TGDL + L +
Sbjct: 324 EIRIVDDAGEV-LPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGF-LRN 381

Query: 86  GTHFIISPCELESIFRQ------HPDVEDVA--VIGIPHDVFGELPAAVVVPKPNSSVTA 137
           G   +I+    + I         H D+E VA  V GI      +L         +    +
Sbjct: 382 G-RLVITGRAKDIIIVNGQNYYPH-DIERVAEQVEGI------KLGRVAACGVYDEKEQS 433

Query: 138 EEVKQFVEFPRK 149
           EEV  FVE+ + 
Sbjct: 434 EEVVIFVEYRQS 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 61  VEATKEMLDDDGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDV 106
           VE   +    DGWL TGD+     DG   I              I   +LE+     P+V
Sbjct: 419 VEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEV 478

Query: 107 EDVAVIGIPHDVFGELPAAVVVPKPNSSVTAE 138
            + AVIG P D +GE P AV V  P    T E
Sbjct: 479 VECAVIGYPDDKWGERPLAVTVLAPGIEPTRE 510

Length = 576

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 52.7 bits (126), Expect = 8e-09
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 71  DGWLHTGDLAYRLPDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPH 116
           DG   TGD+ Y    G  FI+               P  +E+    HP V D AVIG+P 
Sbjct: 395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPD 454

Query: 117 DVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
           + FG   AA VV  P S V A +++ +++
Sbjct: 455 ERFGHRLAAFVVLHPGSGVDAAQLRDYLK 483

Length = 516

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 52.2 bits (126), Expect = 9e-09
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 20/135 (14%)

Query: 27  AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEM-LDDDGWLHTGDLAYRLP 84
            ++I+ P T  +LP G+ G L ++G +V  GY N  E T E+ +  DGW  TGD+     
Sbjct: 321 EVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDE 380

Query: 85  DGTHFI--------------ISPCELESIFRQH-PDVEDVAVIGIPHDVFGELPAAVVVP 129
           DG   I              +S   +E +  +  P+    A + +P +  GE    +   
Sbjct: 381 DGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKGEKIVLLTTT 440

Query: 130 KPNSSVTAEEVKQFV 144
                +  EE+   +
Sbjct: 441 ---EDLDPEELNAIL 452

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 17/96 (17%)

Query: 27  AIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           AI+I+D   ++ LP+G+ G L ++G  V  GY    EA  E   +DGW  TGDL + L D
Sbjct: 384 AIRIVDEDGAL-LPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGF-LHD 441

Query: 86  GTHFI--------------ISPCELESIFRQHPDVE 107
           G   I                  E+E+   Q P VE
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVE 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 19/139 (13%)

Query: 21  HFQEHNAIKIIDPVTSVQLPDGKTGE-LCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGD 78
                  +++ D        DGK    + LKG  +  GY    EAT+  L  DG+  TGD
Sbjct: 338 IPLV--RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 395

Query: 79  LAYRLPDG-THF-------------IISPCELESIFRQHPDVEDVAVIGIPHDVFGELPA 124
           +A    +G                  IS  +LE+    HP V++ AV+ IPH  + E P 
Sbjct: 396 IAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 455

Query: 125 AVVVPKPNSSVTAEEVKQF 143
           AVVVP+     T EE+ + 
Sbjct: 456 AVVVPR-GEKPTPEELNEH 473

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 32  DPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI 90
            P      P    G L +K     LGY N  E T E+L D GW++TGDL  R  DG  +I
Sbjct: 362 GPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLID-GWVNTGDLLERREDGFFYI 420

Query: 91  --------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN-SSV 135
                         I+P E++ I      V + A   IP + FG L    VV        
Sbjct: 421 KGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDES 480

Query: 136 TAEEVKQ 142
            A  +K 
Sbjct: 481 AARALKH 487

Length = 540

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 17/86 (19%)

Query: 76  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
           TGD A R  DG  +I              +   E+ES    HP V + AV+GIP D+ G+
Sbjct: 479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQ 538

Query: 122 LPAAVVVPKPN---SSVTAEEVKQFV 144
              A V  K          +E+++ V
Sbjct: 539 AIYAFVTLKDGYEPDDELRKELRKHV 564

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 20/107 (18%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII------ 91
           L D   GE+CL+G+ +F GY  + + T+E+L D GW HTGD+    P+G   II      
Sbjct: 460 LSDVPRGEICLRGNTLFSGYHKRQDLTEEVLID-GWFHTGDIGEWQPNGAMKIIDRKKNI 518

Query: 92  ---SPCE------LESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
              S  E      LE+ + + P +  + V G   + F     AVVVP
Sbjct: 519 FKLSQGEYVAVENLENTYSRCPLIASIWVYG---NSFESFLVAVVVP 562

Length = 660

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 24/127 (18%)

Query: 28  IKIID-PVTSVQ----LPDGKTGELCLKGD-VFLGYRNKVEAT---KEMLDDDGWLHTGD 78
           I I D P+ S      LP G+ GE+ + G  V   Y N+ EAT   K    +  W   GD
Sbjct: 277 IPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGD 336

Query: 79  LAYRLPDG--------THFIISPCEL------ESIFRQHPDVEDVAVIGIPHDVFGELPA 124
           L Y    G         H + +          E +F +HP V   A++G+      + P 
Sbjct: 337 LGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-GKPGTQAPV 395

Query: 125 AVVVPKP 131
            VV P P
Sbjct: 396 LVVEPMP 402

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 27   AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEML---DDDGWLHTGDLAYR 82
            A++I+DP T  +LP G+ G + + G  V  GY    E T E++   D  GW  TGD  + 
Sbjct: 970  AVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029

Query: 83   LPDGTHFII 91
              DG   I 
Sbjct: 1030 DEDGFLTIT 1038

Length = 1146

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 33/131 (25%)

Query: 33  PVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG------ 86
           P+  VQ+     GE+ ++G + LGY  +  AT      D W  TGDL +   +G      
Sbjct: 293 PLPHVQVSIANDGEILVRGSLMLGYLGEPPAT------DDWWATGDLGHLDEEGYLYING 346

Query: 87  --THFII-------SPCELESIFRQHPDVEDVAVIGIPHDVFGE-LPA--AVVVPKPNSS 134
              + II       SP  +ES  +Q P +           VFG+  P   A++VP PN  
Sbjct: 347 RKKNLIITSFGRNVSPEWVESELQQAPAIAQAV-------VFGDAQPFLVALIVPAPN-- 397

Query: 135 VTAEEVKQFVE 145
           ++ ++++  V+
Sbjct: 398 ISDDQLEAAVQ 408

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 19/110 (17%)

Query: 38  QLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------ 90
            LP G+ G L  +G   F GY    +      D +G+  +GDL    PDG  +I      
Sbjct: 374 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDG--YITVVGRE 431

Query: 91  ----------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK 130
                     I+  E+E++  +HP V   A++ +  ++ GE   A +V K
Sbjct: 432 KDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVK 481

Length = 536

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 50.0 bits (119), Expect = 8e-08
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT---------- 87
           LP G  GEL + G  + LGY N+ + T E         TGDLA  L DG           
Sbjct: 562 LPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQ 621

Query: 88  ----HFIISPCELESIFRQHP 104
                F I   E+E+   + P
Sbjct: 622 VKIRGFRIELGEIEAALAEQP 642

Length = 642

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 23/107 (21%)

Query: 56  GYRNKVEATKEMLDDDGWLHTGDLAY----------RLPDGTHFIIS-------PCELES 98
           GYRN V+   +   + GW  T DL            R  D     IS       P  +E+
Sbjct: 220 GYRNPVD--PDPFAEPGWFRTDDLGALDDGVLTVLGRADD----AISTGGLTVLPQVVEA 273

Query: 99  IFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
               HP V D AV G+P D  G+   A VV     + T E ++  V 
Sbjct: 274 ALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVA 320

Length = 358

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 25  HNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
           H  +KI    +S      + G +  +G  V LGY  +   T  +L +DGWL TGD+ +  
Sbjct: 372 HVELKIGLDESS------RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWID 425

Query: 84  PDGTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
             G  ++I               P E+E++  QHP V  V V+G+P     E+  A V
Sbjct: 426 KAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACV 483

Length = 563

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 27  AIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKE----MLDD------DG-WL 74
            ++I+DP T ++ P G  GE+ + GD V  GY  K E T+      L D      +G WL
Sbjct: 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWL 439

Query: 75  HTGDLAYRLPDGTHFII 91
            TGDL + + +G  FI+
Sbjct: 440 RTGDLGF-ISEGELFIV 455

Length = 578

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 6/81 (7%)

Query: 45  GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQH 103
           GE+C++G  +F GY  + + TKE+L D GWLHTGD+    P+G+  II     ++IF+  
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLID-GWLHTGDVGEWQPNGSMKIID--RKKNIFKLS 525

Query: 104 PDVEDVAVIGIPHDVFGELPA 124
              E VAV  I  +++GE+ A
Sbjct: 526 QG-EYVAVENI-ENIYGEVQA 544

Length = 666

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 19  GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEAT-KEMLDDDG--WL 74
           G+    H A+ I+DP +   L D + GE+   G  +  GY    EA+ K  ++ DG  WL
Sbjct: 373 GRSQPGH-AVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWL 431

Query: 75  HTGDLAYRLPDGTHFI 90
            TGDL + L DG  F+
Sbjct: 432 RTGDLGF-LRDGELFV 446

Length = 4334

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 34/154 (22%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
           ++IID   +V LP G  G++ ++        +F  Y +  E T   +  D ++ TGD   
Sbjct: 354 VQIIDDNGNV-LPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGI 411

Query: 82  RLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
              DG              + + I P E+ES   +HP V + AV+  P  + GE+  A V
Sbjct: 412 MDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFV 471

Query: 128 VPKP-----NSSVTAEEVKQFV-------EFPRK 149
           V  P     +     +E+++ V       ++PRK
Sbjct: 472 VLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRK 505

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 76  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
           TGD A R  DG ++I              +   E+ES    HP V + AV+G P D+ G+
Sbjct: 487 TGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQ 546

Query: 122 LPAAVVVPKPNSSVTAEEVKQFVEFPRK 149
              A V  K     + E  K+   + RK
Sbjct: 547 GIYAFVTLKGGEEPSDELRKELRNWVRK 574

Length = 637

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 38  QLPDGKTGELCLKGDVF-LGYRNKVEATKEM----------------LDDDGWLHTGDLA 80
           +LP G+ G +  + D     Y N  E T                   +D+DG+L+  D  
Sbjct: 342 ELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRK 401

Query: 81  YRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEV 140
             +       I P E E+    HP V DVAVIG+P    GE   AV+        + E  
Sbjct: 402 SFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELA 461

Query: 141 KQFVEFPR 148
           ++ +++ R
Sbjct: 462 RELIDYTR 469

Length = 501

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 15/84 (17%)

Query: 68  LDDDGWLHTGDLAYRLPDG---------THFI-----ISPCELESIFRQHPDVEDVAVIG 113
           ++D+GW  T D      +G           F      I P E+E +  QHP V+ V V+ 
Sbjct: 328 VNDEGWFATRDRG-EWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVP 386

Query: 114 IPHDVFGELPAAVVVPKPNSSVTA 137
           +    FG+ P AVV     ++V  
Sbjct: 387 VADAEFGQRPVAVVESDSEAAVVN 410

Length = 458

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 20/80 (25%)

Query: 30  IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML------------------DD 70
           I+DP T  +LPDG+ GE+ L GD +  GY  + E T+                     DD
Sbjct: 415 IVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADD 474

Query: 71  DGWLHTGDLAYRLPDGTHFI 90
             WL TGDL   L DG  +I
Sbjct: 475 GTWLRTGDLGVYL-DGELYI 493

Length = 612

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 21/124 (16%)

Query: 41  DGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH----------- 88
            G+ GEL + G      Y N    T++      W  +GD   R  DG++           
Sbjct: 353 AGEPGELLISGPSSATMYWNNRAKTRDTFQG-EWTRSGDKYVRNDDGSYTYAGRTDDMLK 411

Query: 89  ---FIISPCELESIFRQHPDVEDVAVIGIPHDVFGEL-PAAVVVPKPNSSVTA---EEVK 141
                +SP E+ES   QHP V + AV+G+  D  G + P A +V +P   +      E+K
Sbjct: 412 VSGIYVSPFEIESALIQHPAVLEAAVVGV-EDEDGLIKPKAFIVLRPGQDIDTALETELK 470

Query: 142 QFVE 145
           + V+
Sbjct: 471 EHVK 474

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 24/107 (22%)

Query: 30  IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKE-MLDDDGWL--------HTGDL 79
           ++DP     +P G  GELC+ G  V  GY N+ E T E  + D  WL         TGDL
Sbjct: 271 VLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330

Query: 80  AYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVI 112
              L DG+  F+             I   E+E++ R  P V   AV+
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVV 377

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 18/68 (26%)

Query: 30  IIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML-----------------DDD 71
           I+DP T+ +LPDG+ GE+ L G+ +  GY  K E T                     DD 
Sbjct: 404 IVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463

Query: 72  GWLHTGDL 79
            W+ TGD 
Sbjct: 464 LWVRTGDY 471

Length = 631

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           ++++D    V LP    G + L+G+ V  GY   ++      D DGWL TGDL Y   +G
Sbjct: 371 VRVVDEDGQV-LPPRGVGVIELRGESVTPGYLT-MDGFIPAQDADGWLDTGDLGYLTEEG 428

Length = 545

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 26/127 (20%)

Query: 39   LPDGKTGELCLKGD-VFLGYRNKVEATKEML------DDDGWLH-TGDLAYRLPDGT--- 87
            +P G  GEL L G  +  GY N+   T E             L+ TGDLA    DG    
Sbjct: 1913 VPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEY 1972

Query: 88   -----H------FIISPCELESIFRQHPDVEDVAVIGIPHD-VFGELPAAVVVPKPNSSV 135
                 H      F I   E+E+  R+   V +  V  I  D   G+   A VVP  +  +
Sbjct: 1973 LGRIDHQVKIRGFRIELGEIEARLREQGGVREAVV--IAQDGANGKQLVAYVVPT-DPGL 2029

Query: 136  TAEEVKQ 142
              ++  Q
Sbjct: 2030 VDDDEAQ 2036

Length = 3956

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 33  PVTSVQL-PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           P T ++L P+G   E+ +KG  V  GY    E T E  D++G+   GD A R  D
Sbjct: 354 PGTELKLVPNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD-AVRFVD 407

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 26/114 (22%)

Query: 42  GKTGELCLKGD-VFLGYRNKVEATKEML------DDDGWLH-----TGDLAYRLPDG-TH 88
           G+ GEL  +G  V +GY N  E T E          +  L      +GD   R  +G  +
Sbjct: 354 GEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLY 413

Query: 89  FI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
           F+             +SP E+E +      V +    G+P    G+    VV P
Sbjct: 414 FVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 33  PVTSVQL-P-DGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           P   V+L P  GK  E+ +KG  V  GY    E T E  D++G+  +GD A R  D
Sbjct: 399 PGCEVKLVPVGGKL-EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD-AVRFVD 452

Length = 614

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 76  TGDLAYRLPDGTHFIISPC--------------ELESIFRQHPDVEDVAVIGIPHDVFGE 121
           T D   R  DG +FI+                 E+E     HP V +VAV+G+   + G+
Sbjct: 477 TFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536

Query: 122 LPAAVVVPKPNSSVTAEEVKQFVE 145
           +  A VVPK + S+   E +  +E
Sbjct: 537 VAVAFVVPKDSDSLADREARLALE 560

Length = 629

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 14/69 (20%)

Query: 74  LHTGDLAYRLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVF 119
           + T DL Y+   GT HF+             + P E+E +  + P V++  V      V 
Sbjct: 293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVA 352

Query: 120 GELPAAVVV 128
           GE   A V+
Sbjct: 353 GERVKAKVI 361

Length = 414

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 23/125 (18%)

Query: 39   LPDGKTGELCLKGD-VFLGYRNKVEATKEML-----DDDG--WLHTGDLAYRLPDGT--- 87
            LP G  GEL L G+ V  GY  +   T E          G     TGDLA    DG    
Sbjct: 4888 LPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDY 4947

Query: 88   -----H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136
                 H      F I   E+E+  R+HP V +  VI     V  +L    VVP+  +   
Sbjct: 4948 LGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQL-VGYVVPQDPALAD 5006

Query: 137  AEEVK 141
            A+E +
Sbjct: 5007 ADEAQ 5011

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 23/125 (18%)

Query: 39   LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTH--------- 88
            L  G  GEL L G+ +  GY N+   T E    D +  +G+  YR  D            
Sbjct: 2340 LAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEY 2399

Query: 89   ------------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT 136
                        F I   E+E+  + HP V +  V+       G+   A VVP   +   
Sbjct: 2400 LGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ-DGASGKQLVAYVVPDDAAEDL 2458

Query: 137  AEEVK 141
              E++
Sbjct: 2459 LAELR 2463

Length = 5163

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 78  DLAYRLPDGTHFIISPC--------------ELESIFRQHPDVEDVAVIGIPHDVFGELP 123
           D   R  DG  FI+                 E+E     HP V +VAV+G+  ++ G++ 
Sbjct: 478 DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVA 537

Query: 124 AAVVVPKPNSSVTAEEVKQFVE 145
               + K + S         VE
Sbjct: 538 VVFAILKESDSAGDAHDPHAVE 559

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG1176|consensus	537		100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.97
KOG1177|consensus	596		99.96
PLN02574	560	4-coumarate--CoA ligase-like	99.96
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.95
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.95
PLN02654	666	acetate-CoA ligase	99.95
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.95
PLN02614	666	long-chain acyl-CoA synthetase	99.95
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.95
PRK00174	637	acetyl-CoA synthetase; Provisional	99.95
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK07529	632	AMP-binding domain protein; Validated	99.94
PRK09088	488	acyl-CoA synthetase; Validated	99.94
PLN02246	537	4-coumarate--CoA ligase	99.94
PRK06839	496	acyl-CoA synthetase; Validated	99.94
PRK09274	552	peptide synthase; Provisional	99.94
PLN02330	546	4-coumarate--CoA ligase-like 1	99.94
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.94
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.94
PLN03051	499	acyl-activating enzyme; Provisional	99.94
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.94
PLN02736	651	long-chain acyl-CoA synthetase	99.94
PRK07788	549	acyl-CoA synthetase; Validated	99.94
PTZ00342	746	acyl-CoA synthetase; Provisional	99.94
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.94
PLN02860	563	o-succinylbenzoate-CoA ligase	99.94
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.94
PRK04319	570	acetyl-CoA synthetase; Provisional	99.93
PRK06145	497	acyl-CoA synthetase; Validated	99.93
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.93
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.93
PRK06164	540	acyl-CoA synthetase; Validated	99.93
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.93
PRK08315	559	AMP-binding domain protein; Validated	99.93
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.93
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.93
PRK05852	534	acyl-CoA synthetase; Validated	99.93
PRK06178	567	acyl-CoA synthetase; Validated	99.93
PRK13382	537	acyl-CoA synthetase; Provisional	99.93
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.93
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.93
PRK07514	504	malonyl-CoA synthase; Validated	99.93
PRK07638	487	acyl-CoA synthetase; Validated	99.93
PRK07470	528	acyl-CoA synthetase; Validated	99.93
PRK07867	529	acyl-CoA synthetase; Validated	99.93
PRK06060	705	acyl-CoA synthetase; Validated	99.93
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.93
PRK12583	558	acyl-CoA synthetase; Provisional	99.93
KOG1256|consensus	691		99.93
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.93
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.93
PRK13390	501	acyl-CoA synthetase; Provisional	99.93
PRK07787	471	acyl-CoA synthetase; Validated	99.93
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.93
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.93
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.93
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.92
PRK06188	524	acyl-CoA synthetase; Validated	99.92
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.92
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.92
PRK08316	523	acyl-CoA synthetase; Validated	99.92
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.92
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.92
PRK05857	540	acyl-CoA synthetase; Validated	99.92
PRK13388	540	acyl-CoA synthetase; Provisional	99.92
PTZ00216	700	acyl-CoA synthetase; Provisional	99.92
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.91
PRK12316	5163	peptide synthase; Provisional	99.91
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.91
PRK12467	3956	peptide synthase; Provisional	99.91
PRK12316	5163	peptide synthase; Provisional	99.91
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.91
KOG1175|consensus	626		99.91
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.91
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.91
PRK13383	516	acyl-CoA synthetase; Provisional	99.91
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.91
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.9
PLN03102	579	acyl-activating enzyme; Provisional	99.9
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.9
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.9
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.9
PRK09192	579	acyl-CoA synthetase; Validated	99.9
PRK13391	511	acyl-CoA synthetase; Provisional	99.9
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.9
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.9
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.9
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.9
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.89
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.89
PLN02479	567	acetate-CoA ligase	99.89
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.89
PRK08162	545	acyl-CoA synthetase; Validated	99.89
PRK07868	994	acyl-CoA synthetase; Validated	99.89
PRK05691	4334	peptide synthase; Validated	99.89
PRK12467	3956	peptide synthase; Provisional	99.89
PRK05850	578	acyl-CoA synthetase; Validated	99.89
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.88
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.88
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.88
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.88
PLN03052	728	acetate--CoA ligase; Provisional	99.87
PRK05691	4334	peptide synthase; Validated	99.87
KOG1180|consensus	678		99.87
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.86
PRK12582	624	acyl-CoA synthetase; Provisional	99.86
PRK07798	533	acyl-CoA synthetase; Validated	99.86
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.85
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.84
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.83
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.82
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.77
PRK08308	414	acyl-CoA synthetase; Validated	99.74
PRK09188	365	serine/threonine protein kinase; Provisional	99.62
KOG1179|consensus	649		99.57
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.49
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.34
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.29
PTZ00297	1452	pantothenate kinase; Provisional	98.84
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.78
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.56
KOG3628|consensus	1363		98.48
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	98.37
KOG1178|consensus	1032		97.95
KOG3628|consensus	1363		97.4
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	95.14
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	94.84

>KOG1176|consensus

Probab=100.00  E-value=6.7e-37  Score=243.54  Aligned_cols=146  Identities=40%  Similarity=0.705  Sum_probs=137.6

Q ss_pred             CeeeeccCCccc--------c--cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSK--------Q--KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~--------~--~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      +.+.||+||.+.        .  +.+++|+ ++++++..+.+ ++|+.+++++.|||+++|++ |.|||+||++|++.|+
T Consensus       328 v~q~YGmTE~~~~~~~~~~~~e~k~~svG~-~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~  405 (537)
T KOG1176|consen  328 VIQGYGMTEAGGLITSNDWGPERKPGSVGR-LLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFD  405 (537)
T ss_pred             EEEeeccccccCceeecCCCccCcccccCc-cccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcc
Confidence            368999999982        2  6889999 99999988888 99999999999999999999 9999999999999997


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .+|||+|||+|++|+||+|+|+              +|.|||++|..||.|.||+|++.+|+.+|+.++|+|+++++..+
T Consensus       406 ~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~l  485 (537)
T KOG1176|consen  406 DDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTL  485 (537)
T ss_pred             cCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcC
Confidence            7799999999999999999997              99999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhhccc
Q psy4966         136 TAEEVKQFVEFPR  148 (149)
Q Consensus       136 ~~~~l~~~l~~~~  148 (149)
                      +.++|.++|+++.
T Consensus       486 te~di~~~v~k~l  498 (537)
T KOG1176|consen  486 TEKDIIEYVRKKL  498 (537)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999999864

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=1.3e-30  Score=209.33  Aligned_cols=144  Identities=40%  Similarity=0.687  Sum_probs=128.4

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++.           ...+++|+ |+|+++++|+|++++.++| |++|||+++||+ +.|||++|+.|...|
T Consensus       320 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f  397 (534)
T COG0318         320 ILEGYGLTETSPVVTINPPDDLLAKPGSVGR-PLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAF  397 (534)
T ss_pred             eEEeecccccCceeecCCCchhhhcCCcccc-cCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhh
Confidence            468999999984           24556677 9999999999955555666 999999999999 999999999999988


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC--
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN--  132 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~--  132 (149)
                      ..+|||+|||+|++|++|+++|+              +|.|||.+|.+||.|.+++|++++++.+|+.++|+++++++  
T Consensus       398 ~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~  477 (534)
T COG0318         398 DEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD  477 (534)
T ss_pred             ccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC
Confidence            55699999999999999999997              99999999999999999999999999999999999999876  


Q ss_pred             CCCCHHHHHHHhhc
Q psy4966         133 SSVTAEEVKQFVEF  146 (149)
Q Consensus       133 ~~~~~~~l~~~l~~  146 (149)
                      ...+.++|.++|++
T Consensus       478 ~~~~~~~i~~~~~~  491 (534)
T COG0318         478 AELTAEELRAFLRK  491 (534)
T ss_pred             CCCCHHHHHHHHHh
Confidence            35588999999886

>KOG1177|consensus

Probab=99.96  E-value=9.1e-29  Score=190.31  Aligned_cols=144  Identities=33%  Similarity=0.540  Sum_probs=133.8

Q ss_pred             eeeeccCCccc------------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           2 FLVVGLVGKSK------------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         2 ~~~~g~~e~~~------------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      .-+||+||+++            ....++|. .+++.++.++| +.|.++|.|+.|||++||++ |+|||++++.|.+..
T Consensus       380 ~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~-~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti  457 (596)
T KOG1177|consen  380 AVAYGLTETSPVLFMSLLGDPPEERIKSVGH-LMDHYEAAIVD-KDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETI  457 (596)
T ss_pred             EEEeeccccCcceeeecCCCCHHHHHhhhhh-ccccccccccc-CCCCccccCCCceEEEEechhheeecCCcccchhhc
Confidence            46899999985            34567888 89999999999 99999999999999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..+.||+|||++.+|++|+++|+              +|.|||+.|.+||.|.++.|++++|...|+.+||+|.+.++..
T Consensus       458 ~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e  537 (596)
T KOG1177|consen  458 GNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAE  537 (596)
T ss_pred             ccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccc
Confidence            88999999999999999999997              9999999999999999999999999999999999999987654


Q ss_pred             --CCHHHHHHHhhcc
Q psy4966         135 --VTAEEVKQFVEFP  147 (149)
Q Consensus       135 --~~~~~l~~~l~~~  147 (149)
                        .+.++|+++|+.+
T Consensus       538 ~~~t~E~lKa~Ck~k  552 (596)
T KOG1177|consen  538 GKTTAETLKAMCKGK  552 (596)
T ss_pred             ccccHHHHHHHHhcc
Confidence              5899999999876

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.96  E-value=3.1e-28  Score=196.04  Aligned_cols=146  Identities=34%  Similarity=0.607  Sum_probs=131.2

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++.           ....++|+ |+|+++++|+|+++|++++.|+.|||+++|+. +.|||++++.+...|
T Consensus       348 v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~-~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~  426 (560)
T PLN02574        348 FIQGYGMTESTAVGTRGFNTEKLSKYSSVGL-LAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTI  426 (560)
T ss_pred             EEecccccccCceeecCCCccccCCCCceee-eCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhc
Confidence            367899999753           12346787 99999999999888999999999999999999 999999999999988


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..+|||+|||+|++|++|+++|.              ++.|||++|.+|++|.+++|++++++..|+.++++|+.+++..
T Consensus       427 ~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  506 (560)
T PLN02574        427 DKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGST  506 (560)
T ss_pred             cCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCC
Confidence            78999999999999999999997              8999999999999999999999999988999999999887777


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.+++.+++++.
T Consensus       507 ~~~~~l~~~~~~~  519 (560)
T PLN02574        507 LSQEAVINYVAKQ  519 (560)
T ss_pred             CCHHHHHHHHHHh
Confidence            7888888888764

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.95  E-value=1.2e-27  Score=190.08  Aligned_cols=138  Identities=29%  Similarity=0.401  Sum_probs=121.5

Q ss_pred             eeeeccCCccc------c--cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcC--C-CccccCCchhhhcccCC
Q psy4966           2 FLVVGLVGKSK------Q--KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--V-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         2 ~~~~g~~e~~~------~--~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--~-~~gY~~~~~~~~~~~~~   70 (149)
                      ...||+||++.      -  +..+.|+ |+||+++.++| ++|+++++|+ |+|+++.+  . +.+||++++.+.+.+.+
T Consensus       319 ~d~~gqTEtg~~~~~~~~~~~~g~~g~-p~pG~~~~vvd-d~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~  395 (528)
T COG0365         319 LDIYGQTETGMGFIAGRPPVKNGSSGL-PLPGYAVRRVD-DEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFG  395 (528)
T ss_pred             eccccccccCccccCCCCCcCCCCCCC-CCCCceeEEEC-CCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhh
Confidence            45799999972      1  4566677 99999999999 6699999999 99999997  5 99999999999998854


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      . ||.|||.+++|+||++||+              ++.|||++|.+||.|.||+|++++|+..|+.++|||+++++...+
T Consensus       396 ~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~  474 (528)
T COG0365         396 R-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN  474 (528)
T ss_pred             c-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH
Confidence            4 9999999999999999998              899999999999999999999999999999999999999887655


Q ss_pred             HHHHHHHhh
Q psy4966         137 AEEVKQFVE  145 (149)
Q Consensus       137 ~~~l~~~l~  145 (149)
                        +|.+.++
T Consensus       475 --~L~~ei~  481 (528)
T COG0365         475 --ELAEEIR  481 (528)
T ss_pred             --HHHHHHH
Confidence              4544443

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.95  E-value=2.2e-27  Score=194.26  Aligned_cols=130  Identities=20%  Similarity=0.229  Sum_probs=116.2

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcC---C-CccccCCchhhhc
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD---V-FLGYRNKVEATKE   66 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~---~-~~gY~~~~~~~~~   66 (149)
                      ++..||+||++..          ...++|+ |+|+++++|+| ++|++++.|+.|||++++|   . +.|||++++.+..
T Consensus       408 i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~-p~~g~~~~i~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~  485 (647)
T PTZ00237        408 SSRGYGQTEIGITYLYCYGHINIPYNATGV-PSIFIKPSILS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQ  485 (647)
T ss_pred             EEeeechHHhChhhhccCCCCCCCCCCCcc-CcCCceEEEEC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHH
Confidence            3578999998632          1257788 99999999999 7899999999999999986   6 8999999999988


Q ss_pred             ccCC-CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          67 MLDD-DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        67 ~~~~-~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      .|.. +|||+|||+|++|++|+++|+              +|.|||++|.+||.|.+++|++++++.+|+.++|+|++++
T Consensus       486 ~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~  565 (647)
T PTZ00237        486 LFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQ  565 (647)
T ss_pred             HHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEecc
Confidence            7743 789999999999999999997              9999999999999999999999999999999999999884


Q ss_pred             C
Q psy4966         132 N  132 (149)
Q Consensus       132 ~  132 (149)
                      +
T Consensus       566 ~  566 (647)
T PTZ00237        566 D  566 (647)
T ss_pred             C
Confidence            3

>PLN02654 acetate-CoA ligase

Probab=99.95  E-value=5.3e-27  Score=192.58  Aligned_cols=144  Identities=22%  Similarity=0.183  Sum_probs=123.6

Q ss_pred             eeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEc--CC-CccccCCchhhhcc
Q psy4966           2 FLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKEM   67 (149)
Q Consensus         2 ~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~~-~~gY~~~~~~~~~~   67 (149)
                      ...||+||.+.           ...+++|+ |+||++++|+| ++|++++.++.|||++++  |. +.|||++++.+...
T Consensus       429 ~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~-p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~  506 (666)
T PLN02654        429 SDTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETT  506 (666)
T ss_pred             eccccccccCCeeeccCCCCCCCCCCccCC-CCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHh
Confidence            46789998752           34567888 99999999999 889999999999999999  56 99999999988776


Q ss_pred             cCC--CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          68 LDD--DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        68 ~~~--~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      +..  +|||+|||++++|+||+++|+              +|.|||++|.+||+|.+++|++++++..|+.++++|++++
T Consensus       507 ~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~  586 (666)
T PLN02654        507 YFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVE  586 (666)
T ss_pred             hhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECC
Confidence            532  789999999999999999997              9999999999999999999999999999999999999988


Q ss_pred             CCCCCH---HHHHHHhhcc
Q psy4966         132 NSSVTA---EEVKQFVEFP  147 (149)
Q Consensus       132 ~~~~~~---~~l~~~l~~~  147 (149)
                      +...+.   ++|+++|++.
T Consensus       587 ~~~~~~~l~~~l~~~~~~~  605 (666)
T PLN02654        587 GVPYSEELRKSLILTVRNQ  605 (666)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            765543   3566666543

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=5.7e-27  Score=188.72  Aligned_cols=145  Identities=37%  Similarity=0.555  Sum_probs=130.0

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||.+..         ...++|. |+|++.++++| ++++++|.|+.|||+++|+. +.||+++++.+.+.|..
T Consensus       354 v~~~YG~tE~~~~~~~~~~~~~~~~~vG~-~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~  431 (562)
T PRK05677        354 ICEGYGMTETSPVVSVNPSQAIQVGTIGI-PVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDS  431 (562)
T ss_pred             eeccCCccccCcceeecCccCCCCCccCc-cCCCCEEEEEC-CCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCC
Confidence            4678999997632         2356887 99999999999 77899999999999999999 99999999999999977


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      ++||+|||+++++++|+++|.              +|.|||++|.+|++|.+++|+++++...|+.+++++++.++...+
T Consensus       432 ~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~  511 (562)
T PRK05677        432 DGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLT  511 (562)
T ss_pred             CCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCC
Confidence            899999999999999999986              899999999999999999999999999899999999887766678


Q ss_pred             HHHHHHHhhcc
Q psy4966         137 AEEVKQFVEFP  147 (149)
Q Consensus       137 ~~~l~~~l~~~  147 (149)
                      .+.+++++++.
T Consensus       512 ~~~l~~~~~~~  522 (562)
T PRK05677        512 KEQVMEHMRAN  522 (562)
T ss_pred             HHHHHHHHHHh
Confidence            88888888764

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.95  E-value=2.8e-27  Score=194.25  Aligned_cols=126  Identities=29%  Similarity=0.470  Sum_probs=109.2

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcCCC--CccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVT--SVQLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~--g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++.          ...+++|+ |+|+++++|+|+++  ++++++|+.|||+++|+. |.|||++|+.|++.
T Consensus       414 i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~-p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~  492 (666)
T PLN02614        414 VLQGYGLTESCAGTFVSLPDELDMLGTVGP-PVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEV  492 (666)
T ss_pred             EEeeCchHhhhhheeeeccccCCcCCcccC-cCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhh
Confidence            367899999753          12467888 99999999998333  478899999999999999 99999999999999


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      | .+|||+|||+|++|+||+|+|+               +|.|||++|.+||.|.+++|++.....   .++|+|+++.
T Consensus       493 f-~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~  567 (666)
T PLN02614        493 L-IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQ  567 (666)
T ss_pred             h-ccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCH
Confidence            8 5899999999999999999997               899999999999999999999975433   3888888653

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.95  E-value=1.4e-26  Score=188.62  Aligned_cols=144  Identities=24%  Similarity=0.213  Sum_probs=124.8

Q ss_pred             eeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCC-CCCeeEEEEEc--CC-CccccCCchhhhc
Q psy4966           2 FLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLP-DGKTGELCLKG--DV-FLGYRNKVEATKE   66 (149)
Q Consensus         2 ~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~-~g~~Gel~v~~--~~-~~gY~~~~~~~~~   66 (149)
                      +..||+||++.           ...+++|+ |+|+++++++| ++|++++ +|+.|||++++  |. +.|||++++.+..
T Consensus       390 ~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~-p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~  467 (625)
T TIGR02188       390 VDTWWQTETGGIMITPLPGATPTKPGSATL-PFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVD  467 (625)
T ss_pred             EecccccccCCceeecCCCCCCcCCCcccC-CcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHH
Confidence            56899999753           23456888 99999999999 8899999 99999999999  46 9999999988777


Q ss_pred             ccC--CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          67 MLD--DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        67 ~~~--~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      .+.  .+|||+|||++++|++|+++|+              +|.|||++|.+||+|.+++|++++++..|+.++++|++.
T Consensus       468 ~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~  547 (625)
T TIGR02188       468 TYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLK  547 (625)
T ss_pred             HHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeC
Confidence            663  3789999999999999999997              999999999999999999999999999999999999998


Q ss_pred             CCCCCCH---HHHHHHhhcc
Q psy4966         131 PNSSVTA---EEVKQFVEFP  147 (149)
Q Consensus       131 ~~~~~~~---~~l~~~l~~~  147 (149)
                      ++...+.   ++|+++|++.
T Consensus       548 ~~~~~~~~~~~~l~~~~~~~  567 (625)
T TIGR02188       548 DGYEPDDELRKELRKHVRKE  567 (625)
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            7765543   5677777654

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.95  E-value=1.9e-26  Score=188.15  Aligned_cols=145  Identities=23%  Similarity=0.229  Sum_probs=125.2

Q ss_pred             CeeeeccCCcccc-----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEc--CC-CccccCCchhhhc
Q psy4966           1 MFLVVGLVGKSKQ-----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKE   66 (149)
Q Consensus         1 ~~~~~g~~e~~~~-----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~~-~~gY~~~~~~~~~   66 (149)
                      ++..||+||++..           ...++|+ |+|+++++|+| ++|++++.|+.|||+++|  +. +.|||++++.+..
T Consensus       398 i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~-p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~  475 (637)
T PRK00174        398 IVDTWWQTETGGIMITPLPGATPLKPGSATR-PLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVK  475 (637)
T ss_pred             eEecccccccCCceEecCCCCCCcCCCcccC-CCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHH
Confidence            3578999998632           2356888 99999999999 889999999999999999  56 9999999998877


Q ss_pred             ccC--CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          67 MLD--DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        67 ~~~--~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      .+.  .+|||+|||++++|++|+++|+              +|.|||++|.+||+|.+++|++.+++..|+.++++|++.
T Consensus       476 ~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~  555 (637)
T PRK00174        476 TYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLK  555 (637)
T ss_pred             hhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEEC
Confidence            652  3789999999999999999997              999999999999999999999999999999999999998


Q ss_pred             CCCCCC---HHHHHHHhhcc
Q psy4966         131 PNSSVT---AEEVKQFVEFP  147 (149)
Q Consensus       131 ~~~~~~---~~~l~~~l~~~  147 (149)
                      ++...+   .++|+++|++.
T Consensus       556 ~~~~~~~~~~~~l~~~l~~~  575 (637)
T PRK00174        556 GGEEPSDELRKELRNWVRKE  575 (637)
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            765544   45777777654

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=6.8e-27  Score=190.66  Aligned_cols=129  Identities=27%  Similarity=0.439  Sum_probs=113.4

Q ss_pred             CcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC-----------------CCeEEcCc
Q psy4966          17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD-----------------DGWLHTGD   78 (149)
Q Consensus        17 ~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~-----------------~~~~~TGD   78 (149)
                      ++|+ |++++.++++|+++++++|.|+.|||+++|+. +.|||++++.+++.|..                 ++||+|||
T Consensus       392 s~G~-~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGD  470 (631)
T PRK07769        392 SAGK-VGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGD  470 (631)
T ss_pred             eCCC-cCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccc
Confidence            6788 99999999999778999999999999999999 99999999999888742                 48999999


Q ss_pred             eEEEcCCCeEEEE--------------ChHHHHHHHhc-CCCccc--EEEEeeec-------------------CCCCCe
Q psy4966          79 LAYRLPDGTHFII--------------SPCELESIFRQ-HPDVED--VAVIGIPH-------------------DVFGEL  122 (149)
Q Consensus        79 ~~~~~~~G~~~i~--------------~~~eIE~~l~~-~~~V~~--~~v~~~~~-------------------~~~g~~  122 (149)
                      +|+++ +|+|+|+              +|.|||++|.+ ||.|.+  ++|+++++                   +.+|+.
T Consensus       471 lg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~  549 (631)
T PRK07769        471 YGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQ  549 (631)
T ss_pred             cccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCcc
Confidence            99995 9999997              99999999986 899998  99999998                   568899


Q ss_pred             EEEEEEeCCC-CCCCHHHHHHHhhcc
Q psy4966         123 PAAVVVPKPN-SSVTAEEVKQFVEFP  147 (149)
Q Consensus       123 ~~a~v~~~~~-~~~~~~~l~~~l~~~  147 (149)
                      ++++|++.++ ...+.++|.++|++.
T Consensus       550 ~~a~v~~~~~~~~~~~~~l~~~~~~~  575 (631)
T PRK07769        550 LVIVAERAPGAHKLDPQPIADDIRAA  575 (631)
T ss_pred             EEEEEEecCccccccHHHHHHHHHHH
Confidence            9999998876 346777888877753

>PRK07529 AMP-binding domain protein; Validated

Probab=99.94  E-value=3e-26  Score=187.15  Aligned_cols=144  Identities=29%  Similarity=0.470  Sum_probs=125.4

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEE--cCCCC---ccCCCCCeeEEEEEcCC-CccccCCchhh
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKII--DPVTS---VQLPDGKTGELCLKGDV-FLGYRNKVEAT   64 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~--d~~~g---~~~~~g~~Gel~v~~~~-~~gY~~~~~~~   64 (149)
                      ++..||+||.+.          ...+++|. |+|++.++++  | ++|   +++++|+.|||+++|+. +.||++++. +
T Consensus       361 l~~~YG~TE~~~~~~~~~~~~~~~~~svG~-~~p~~~v~i~~~d-~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~  437 (632)
T PRK07529        361 IVEGYGLTEATCVSSVNPPDGERRIGSVGL-RLPYQRVRVVILD-DAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-N  437 (632)
T ss_pred             EeeeecccccCcccccCCccccccCCCccc-ccCCceEEEEEcC-CCCcccccCCCCCceEEEEECCCccccccCCcc-c
Confidence            467899999863          23456788 9999999885  5 556   78999999999999999 999998764 4


Q ss_pred             hcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          65 KEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        65 ~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      ...|..++||+|||+|++|++|+++|.              +|.|||++|.+||+|.+++|++.+++..|+.++++|++.
T Consensus       438 ~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~  517 (632)
T PRK07529        438 KGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLK  517 (632)
T ss_pred             cccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEc
Confidence            555557899999999999999999996              899999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHhhcc
Q psy4966         131 PNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       131 ~~~~~~~~~l~~~l~~~  147 (149)
                      ++...+.++|+++|+++
T Consensus       518 ~~~~~~~~~l~~~~~~~  534 (632)
T PRK07529        518 PGASATEAELLAFARDH  534 (632)
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            88788888999988765

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.94  E-value=3.9e-26  Score=180.65  Aligned_cols=145  Identities=28%  Similarity=0.517  Sum_probs=129.2

Q ss_pred             CeeeeccCCcccc------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSKQ------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~~------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||.+..            ...++|. |+|++.++++| +++++++.|+.|||+++|+. +.||+++++.++..
T Consensus       279 v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~-~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~  356 (488)
T PRK09088        279 MVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGI-PTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARA  356 (488)
T ss_pred             eeeeecccccccccccCCCcccccccCCcccc-CCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhh
Confidence            3578999998531            3456887 99999999999 78999999999999999999 99999999999988


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      +..++||+|||+++++++|+++|.              +|.+||++|+.++.|.+++|++++++..|+..++++++.++.
T Consensus       357 ~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~  436 (488)
T PRK09088        357 FTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGA  436 (488)
T ss_pred             hcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCC
Confidence            877899999999999999999986              899999999999999999999999988888888999988766


Q ss_pred             CCCHHHHHHHhhcc
Q psy4966         134 SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~~~l~~~l~~~  147 (149)
                      ..+.+++.++|++.
T Consensus       437 ~~~~~~l~~~~~~~  450 (488)
T PRK09088        437 PLDLERIRSHLSTR  450 (488)
T ss_pred             CCCHHHHHHHHHhh
Confidence            66788888888764

>PLN02246 4-coumarate--CoA ligase

Probab=99.94  E-value=3.6e-26  Score=183.02  Aligned_cols=145  Identities=39%  Similarity=0.679  Sum_probs=129.9

Q ss_pred             eeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhc
Q psy4966           2 FLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKE   66 (149)
Q Consensus         2 ~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~   66 (149)
                      +..||+||.+..              ...++|+ |+++++++++|++++++++.|+.|||+++|+. +.||+++++.+..
T Consensus       328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~  406 (537)
T PLN02246        328 GQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGT-VVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATAN  406 (537)
T ss_pred             eccccccccCcccccccccCCCCccccCCcccc-ccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhh
Confidence            467999998632              2346788 99999999999778899999999999999999 9999999999999


Q ss_pred             ccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          67 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        67 ~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                      .+..++||+|||+++++++|++++.              +|.+||+.|.++|+|.+++|++.++...|+.++++++..++
T Consensus       407 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  486 (537)
T PLN02246        407 TIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNG  486 (537)
T ss_pred             cccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCC
Confidence            8877899999999999999999996              89999999999999999999999999889999999998877


Q ss_pred             CCCCHHHHHHHhhcc
Q psy4966         133 SSVTAEEVKQFVEFP  147 (149)
Q Consensus       133 ~~~~~~~l~~~l~~~  147 (149)
                      ...+.++|+++|+++
T Consensus       487 ~~~~~~~l~~~l~~~  501 (537)
T PLN02246        487 SEITEDEIKQFVAKQ  501 (537)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            667788899988764

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.94  E-value=4.4e-26  Score=180.30  Aligned_cols=144  Identities=33%  Similarity=0.493  Sum_probs=129.0

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++.           ....++|+ |++++.++|+| ++++.++.|+.|||+++|+. +.||+++++.+...+
T Consensus       291 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  368 (496)
T PRK06839        291 FGQGFGMTETSPTVFMLSEEDARRKVGSIGK-PVLFCDYELID-ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI  368 (496)
T ss_pred             eEeeccCCCCCcceEecccccccccCCCCcc-cCCCceEEEEC-CCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH
Confidence            356899999863           22456888 99999999999 77788999999999999999 999999999998877


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .+|||+|||+++++++|++++.              +|.+||++|.++|+|.+++++++++..+|+.++++|+++++..
T Consensus       369 -~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~  447 (496)
T PRK06839        369 -QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSV  447 (496)
T ss_pred             -cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC
Confidence             5899999999999999999886              8999999999999999999999999999999999999988777


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++|+++|++.
T Consensus       448 ~~~~~l~~~~~~~  460 (496)
T PRK06839        448 LIEKDVIEHCRLF  460 (496)
T ss_pred             CCHHHHHHHHHhh
Confidence            8888899888764

>PRK09274 peptide synthase; Provisional

Probab=99.94  E-value=2.6e-26  Score=184.28  Aligned_cols=144  Identities=23%  Similarity=0.359  Sum_probs=118.5

Q ss_pred             CeeeeccCCcccc-------------------cccCcCccccCCceEEEEcCC--------CCccCCCCCeeEEEEEcCC
Q psy4966           1 MFLVVGLVGKSKQ-------------------KATLTGKHFQEHNAIKIIDPV--------TSVQLPDGKTGELCLKGDV   53 (149)
Q Consensus         1 ~~~~~g~~e~~~~-------------------~~~~~g~~p~~~~~~~i~d~~--------~g~~~~~g~~Gel~v~~~~   53 (149)
                      ++..||+||.+..                   ...++|+ |+|+++++|+|+.        ++++++.|+.|||+++|+.
T Consensus       318 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~-~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~  396 (552)
T PRK09274        318 ILTPYGATEALPISSIESREILFATRAATDNGAGICVGR-PVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPM  396 (552)
T ss_pred             EEccccccccceeEeecchhhhccccccccCCCCcccCc-cCCCceEEEEeccccccccccccccCCCCCeeEEEEecCc
Confidence            3578999997531                   1125677 9999999999952        4678999999999999999


Q ss_pred             -CccccCCchhhhcccC--CCC--eEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEee
Q psy4966          54 -FLGYRNKVEATKEMLD--DDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGI  114 (149)
Q Consensus        54 -~~gY~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~  114 (149)
                       +.|||++++.+...|.  .++  ||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|+++
T Consensus       397 ~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~  476 (552)
T PRK09274        397 VTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGV  476 (552)
T ss_pred             ccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEe
Confidence             9999999999887653  355  9999999999999999997              89999999999999999999999


Q ss_pred             ecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966         115 PHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF  146 (149)
Q Consensus       115 ~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~  146 (149)
                      ++.. ++.++++|++.++...+.++|.+.|++
T Consensus       477 ~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~  507 (552)
T PRK09274        477 GVPG-AQRPVLCVELEPGVACSKSALYQELRA  507 (552)
T ss_pred             CCCC-CceEEEEEEccCccccchHHHhhhhHH
Confidence            8764 677888988887766665555555543

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.94  E-value=3.4e-26  Score=183.61  Aligned_cols=146  Identities=40%  Similarity=0.689  Sum_probs=129.8

Q ss_pred             CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||.+..              ...++|. |+|+++++++|+++++++|+|+.|||+++|+. +.||++++..++
T Consensus       332 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~-~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~  410 (546)
T PLN02330        332 VQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGF-ILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETD  410 (546)
T ss_pred             EEecccccccccceecCCCccccccccccCcccc-ccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchh
Confidence            4678999997521              1236787 99999999999778899999999999999999 999999999999


Q ss_pred             cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      ..++.++||+|||+++++++|+++++              +|.+||++|.++++|.+++|+++++...|+.++++|++.+
T Consensus       411 ~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~  490 (546)
T PLN02330        411 RTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINP  490 (546)
T ss_pred             hhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECC
Confidence            88878899999999999999999997              8999999999999999999999999999999999999887


Q ss_pred             CCCCCHHHHHHHhhcc
Q psy4966         132 NSSVTAEEVKQFVEFP  147 (149)
Q Consensus       132 ~~~~~~~~l~~~l~~~  147 (149)
                      +...+.++|++++++.
T Consensus       491 ~~~~~~~~l~~~~~~~  506 (546)
T PLN02330        491 KAKESEEDILNFVAAN  506 (546)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            6667778888888764

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.94  E-value=1.6e-26  Score=189.56  Aligned_cols=125  Identities=30%  Similarity=0.494  Sum_probs=107.2

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcC-CCC-ccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDP-VTS-VQLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~-~~g-~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++.          ...+++|+ |+|+++++|+|. ++| ..++++..|||+++|+. |.|||++|+.|++.
T Consensus       411 l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~-p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~  489 (660)
T PLN02861        411 LSQGYGLTESCGGCFTSIANVFSMVGTVGV-PMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEV  489 (660)
T ss_pred             eeEecchhhhhhceeecccccCCCCCCccC-ccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhh
Confidence            467899999853          12467888 999999999983 334 34456678999999999 99999999999999


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      | .+|||+|||+|++|+||+++|+               +|.|||++|.+||.|.+|+|++.+   .++.++|+|++.
T Consensus       490 f-~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~  563 (660)
T PLN02861        490 L-IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPD  563 (660)
T ss_pred             h-hccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcC
Confidence            9 5899999999999999999997               899999999999999999999976   346789999875

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.94  E-value=4.5e-26  Score=185.90  Aligned_cols=145  Identities=17%  Similarity=0.148  Sum_probs=122.0

Q ss_pred             eeeeccCCccc-------------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcC---C-CccccCCchhh
Q psy4966           2 FLVVGLVGKSK-------------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD---V-FLGYRNKVEAT   64 (149)
Q Consensus         2 ~~~~g~~e~~~-------------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~---~-~~gY~~~~~~~   64 (149)
                      +..||+||++.             ...+++|+ |+|+++++|+|+++|++++.|+.|||+++||   . +.|||++++.+
T Consensus       383 ~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~-p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~  461 (628)
T TIGR02316       383 IDNYWQTETGWPVLAIMPGLDLKPVKLGSPGL-PMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARF  461 (628)
T ss_pred             EecccccccCceeecCCCCCCcCCCCCCCccc-CcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHH
Confidence            56899999862             12356788 9999999999955899999999999999998   4 79999999877


Q ss_pred             hccc---CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEE
Q psy4966          65 KEML---DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV  127 (149)
Q Consensus        65 ~~~~---~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v  127 (149)
                      ...+   ..++||+|||+|++|++|+++|+              +|.|||++|.+||+|.+|+|++++++..|+.+++||
T Consensus       462 ~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~v  541 (628)
T TIGR02316       462 LKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFA  541 (628)
T ss_pred             HHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEE
Confidence            6654   24679999999999999999997              999999999999999999999999999999999999


Q ss_pred             EeCCCCCC--------CHHHHHHHhhcc
Q psy4966         128 VPKPNSSV--------TAEEVKQFVEFP  147 (149)
Q Consensus       128 ~~~~~~~~--------~~~~l~~~l~~~  147 (149)
                      +++++...        ..++|+++|++.
T Consensus       542 v~~~~~~~~~~~~~~~~~~~i~~~~~~~  569 (628)
T TIGR02316       542 ILKESDSAGDAHDPHAVETGMMDCVVRQ  569 (628)
T ss_pred             EEcCCcccccccchHHHHHHHHHHHHHh
Confidence            98765432        235677776654

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.94  E-value=5.4e-26  Score=180.95  Aligned_cols=142  Identities=18%  Similarity=0.168  Sum_probs=115.1

Q ss_pred             eeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCC--CeeEEEEEcCC---CccccCCchhhhc
Q psy4966           2 FLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDG--KTGELCLKGDV---FLGYRNKVEATKE   66 (149)
Q Consensus         2 ~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g--~~Gel~v~~~~---~~gY~~~~~~~~~   66 (149)
                      +..||+||.+.          ...+++|+ |+++++++|+| ++|++++.|  +.|||+++|+.   +.|||+++ .++.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFST-ASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccC-CCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccce
Confidence            57899999742          12357888 99999999999 889999988  47999999996   47999765 3433


Q ss_pred             ccCC--------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhc-CCCcccEEEEeeecCCCC-Ce
Q psy4966          67 MLDD--------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQ-HPDVEDVAVIGIPHDVFG-EL  122 (149)
Q Consensus        67 ~~~~--------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~-~~~V~~~~v~~~~~~~~g-~~  122 (149)
                      .+++        .+||+|||+|++|+||+|+|+              +|.|||++|.+ ||+|.+++|++++++.+| +.
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~  423 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPEL  423 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceE
Confidence            3321        127899999999999999997              89999999986 999999999999999999 68


Q ss_pred             EEEEE---EeCCCC-CCCHHHHHHHhhc
Q psy4966         123 PAAVV---VPKPNS-SVTAEEVKQFVEF  146 (149)
Q Consensus       123 ~~a~v---~~~~~~-~~~~~~l~~~l~~  146 (149)
                      ++|+|   +++++. ..+.++|+++|++
T Consensus       424 ~~a~v~~~v~~~~~~~~~~~~l~~~~~~  451 (499)
T PLN03051        424 LVIFLVLGEEKKGFDQARPEALQKKFQE  451 (499)
T ss_pred             EEEEEEcceecccccccchHHHHHHHHH
Confidence            88998   776654 4566777777653

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.94  E-value=5.4e-26  Score=180.94  Aligned_cols=145  Identities=32%  Similarity=0.524  Sum_probs=130.0

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEc---CC-CccccCCchhhhc
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG---DV-FLGYRNKVEATKE   66 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~---~~-~~gY~~~~~~~~~   66 (149)
                      ++..||+||++..          ...++|. |+++++++++| +++++++.|+.|||+++|   +. +.|||++++.+++
T Consensus       315 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~  392 (517)
T PRK08008        315 LLTSYGMTETIVGIIGDRPGDKRRWPSIGR-PGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAK  392 (517)
T ss_pred             EEeeccccccccccccCCccccccCCcccc-CCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhh
Confidence            3678999998531          1346887 99999999999 889999999999999998   46 9999999999999


Q ss_pred             ccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          67 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        67 ~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                      .|..++||+|||++++|++|+++++              +|.+||++|.+++.|.+++|++.+++.+++.+.++|+++++
T Consensus       393 ~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~  472 (517)
T PRK08008        393 VLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG  472 (517)
T ss_pred             cccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCC
Confidence            9988999999999999999999996              89999999999999999999999999888999999999887


Q ss_pred             CCCCHHHHHHHhhcc
Q psy4966         133 SSVTAEEVKQFVEFP  147 (149)
Q Consensus       133 ~~~~~~~l~~~l~~~  147 (149)
                      ...+.++|.++|++.
T Consensus       473 ~~~~~~~l~~~~~~~  487 (517)
T PRK08008        473 ETLSEEEFFAFCEQN  487 (517)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            777888899888764

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.94  E-value=1.9e-26  Score=188.81  Aligned_cols=127  Identities=30%  Similarity=0.492  Sum_probs=108.1

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCc---cCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSV---QLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~---~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++..         ..+++|+ |+|+++++|+|.+++.   ...++..|||+++|+. |.|||++++.|+..
T Consensus       404 ~~~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~  482 (651)
T PLN02736        404 VLEGYGMTETSCVISGMDEGDNLSGHVGS-PNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV  482 (651)
T ss_pred             eEEEechHHhchheeccCCCCCCCCccCC-ccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhh
Confidence            4678999998632         3457888 9999999999843332   2234457999999999 99999999999999


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      |..+|||+|||+|++|+||+++|+               +|.|||++|.+||.|.+|+|++.   .+++.++|+|++++
T Consensus       483 ~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~  558 (651)
T PLN02736        483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDP  558 (651)
T ss_pred             hccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCH
Confidence            977899999999999999999997               89999999999999999999982   35788999999865

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.94  E-value=8.2e-26  Score=181.41  Aligned_cols=141  Identities=28%  Similarity=0.515  Sum_probs=125.0

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||++.          ....++|+ |+++++++++| +++++++.|+.|||+++|+. +.||++++..  . . 
T Consensus       351 l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~-~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~-  424 (549)
T PRK07788        351 LYNLYGSTEVAFATIATPEDLAEAPGTVGR-PPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I-  424 (549)
T ss_pred             ceeccCcchhchhhccChhhhhhcCCCccc-CCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c-
Confidence            467899999753          12346788 99999999999 88999999999999999999 9999998865  2 2 


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||++++|++|+++|.              +|.|||++|.++|+|.+++|++.+++.+|+.++++|++.++...
T Consensus       425 ~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~  504 (549)
T PRK07788        425 IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAAL  504 (549)
T ss_pred             cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCC
Confidence            4789999999999999999996              89999999999999999999999999999999999999887778


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.++|+++|++.
T Consensus       505 ~~~~l~~~~~~~  516 (549)
T PRK07788        505 DEDAIKDYVRDN  516 (549)
T ss_pred             CHHHHHHHHHHh
Confidence            889999998864

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.94  E-value=5.3e-26  Score=188.35  Aligned_cols=127  Identities=22%  Similarity=0.265  Sum_probs=107.7

Q ss_pred             CeeeeccCCccc---------ccccCcCcccc-CCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQ-EHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~-~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||++.         ...+++|+ |+ |+++++|+|++++........|||+++|+. |.|||++|+.|++.|+
T Consensus       489 i~~gYGlTEt~~~~~~~~~~~~~~gsvG~-p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~  567 (746)
T PTZ00342        489 YYQGYGLTETTGPIFVQHADDNNTESIGG-PISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFT  567 (746)
T ss_pred             EEEeeccCcccceeeeccCCCCCcccccC-cCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcC
Confidence            357899999853         23467888 87 999999998655444445567999999999 9999999999999998


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      .+|||+|||+|++|++|+++|+               +|.+||++|.+||.|.+|+|++....   ..++|+|+++.
T Consensus       568 ~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~  641 (746)
T PTZ00342        568 EDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDK  641 (746)
T ss_pred             cCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEEEECCH
Confidence            8999999999999999999997               89999999999999999999986322   34888888653

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=2.8e-26  Score=173.66  Aligned_cols=134  Identities=26%  Similarity=0.521  Sum_probs=123.4

Q ss_pred             cccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEE
Q psy4966          12 KQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI   90 (149)
Q Consensus        12 ~~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i   90 (149)
                      .....+-|++-.|.-+++|+| ++|+++++|++|+|..+||+ ++|||..|+.++..|+.+|||+|||+.++|++|++.+
T Consensus       354 E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V  432 (542)
T COG1021         354 EIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVV  432 (542)
T ss_pred             HheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEE
Confidence            345677899334899999999 99999999999999999999 9999999999999999999999999999999999999


Q ss_pred             E--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhcc
Q psy4966          91 I--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus        91 ~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                      .              ..+|||+.|.+||.|.++++++.+|+..|++.|||++.++. ..+..+|+++|.++
T Consensus       433 ~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~-~~~~~qlr~~L~~~  502 (542)
T COG1021         433 EGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP-PLRAAQLRRFLRER  502 (542)
T ss_pred             EeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC-CCCHHHHHHHHHHc
Confidence            7              79999999999999999999999999999999999999865 48889999998764

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.94  E-value=1.3e-25  Score=181.01  Aligned_cols=123  Identities=29%  Similarity=0.525  Sum_probs=110.6

Q ss_pred             CcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE----
Q psy4966          17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII----   91 (149)
Q Consensus        17 ~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~----   91 (149)
                      ++|+ |+|++++++++ ++     +|+.|||+++|+. +.|||++++.++..+..+|||+|||+|++|++|+++|+    
T Consensus       365 ~vG~-p~~~~~v~i~~-~~-----~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~  437 (563)
T PLN02860        365 CVGK-PAPHVELKIGL-DE-----SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSN  437 (563)
T ss_pred             ccCC-ccCCcEEEEec-CC-----CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeeccc
Confidence            5677 99999999999 43     5889999999999 99999999999998878899999999999999999997    


Q ss_pred             ----------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC--------------CCCHHHHHHHhhc
Q psy4966          92 ----------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS--------------SVTAEEVKQFVEF  146 (149)
Q Consensus        92 ----------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------------~~~~~~l~~~l~~  146 (149)
                                +|.|||++|.+||+|.+++|++.++...|+.++++|++.++.              ..+.+.|++++++
T Consensus       438 d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  516 (563)
T PLN02860        438 DRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCRE  516 (563)
T ss_pred             ceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhh
Confidence                      899999999999999999999999999999999999987652              3556778888865

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.94  E-value=2.6e-25  Score=178.62  Aligned_cols=144  Identities=26%  Similarity=0.389  Sum_probs=128.5

Q ss_pred             CeeeeccCCcccc--------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcC---C-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ--------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD---V-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~---~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++..        ..+++|. |+++++++|+| +++++++.|..|||+++|+   . +.||+++++.+...|
T Consensus       320 v~~~YG~tE~~~~~~~~~~~~~~~~vG~-~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~  397 (542)
T PRK06155        320 LLDGYGSTETNFVIAVTHGSQRPGSMGR-LAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW  397 (542)
T ss_pred             EEeeecccccCccccCCCCCCCCCCcCc-cCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh
Confidence            4678999998642        2345777 99999999999 7899999999999999997   6 999999999998887


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .++||+|||+++++++|+++|.              +|.+||++|.++++|.+++|++++++..++.+.+++++..+..
T Consensus       398 -~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~  476 (542)
T PRK06155        398 -RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTA  476 (542)
T ss_pred             -cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCC
Confidence             5899999999999999999986              8999999999999999999999999888889999999888777


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++++++|++.
T Consensus       477 ~~~~~~~~~~~~~  489 (542)
T PRK06155        477 LEPVALVRHCEPR  489 (542)
T ss_pred             CCHHHHHHHHHhh
Confidence            8888898888764

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.93  E-value=1.5e-25  Score=180.82  Aligned_cols=144  Identities=28%  Similarity=0.402  Sum_probs=124.8

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEc--CC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||.+.          ...+++|+ |+|+++++++| +++.++++|+.|||++++  +. +.|||++++.+...
T Consensus       351 i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~  428 (570)
T PRK04319        351 IHDNWWMTETGGIMIANYPAMDIKPGSMGK-PLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESY  428 (570)
T ss_pred             eEeceeecccCCEEEecCCCCCCCCCcCcC-CCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhh
Confidence            356899999863          23456888 99999999999 788889999999999997  67 99999999999998


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      |. ++||+|||+++++++|+++|+              +|.|||++|.+||.|.+++|++.+++.+|+.+++++++.++.
T Consensus       429 ~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~  507 (570)
T PRK04319        429 FA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY  507 (570)
T ss_pred             hc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC
Confidence            85 889999999999999999986              899999999999999999999999999999999999988765


Q ss_pred             CCCH---HHHHHHhhcc
Q psy4966         134 SVTA---EEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~---~~l~~~l~~~  147 (149)
                      ..+.   ++|+++|++.
T Consensus       508 ~~~~~~~~~l~~~~~~~  524 (570)
T PRK04319        508 EPSEELKEEIRGFVKKG  524 (570)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            4432   4677776653

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2.7e-25  Score=176.10  Aligned_cols=144  Identities=30%  Similarity=0.505  Sum_probs=129.1

Q ss_pred             CeeeeccCCcccc-----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ-----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~-----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+..           ...++|+ |+|+++++++| +++..++.|..|||+++|+. +.||+++++.++..|
T Consensus       293 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~  370 (497)
T PRK06145        293 YIDAYGLTETCSGDTLMEAGREIEKIGSTGR-ALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF  370 (497)
T ss_pred             eEEeecCcccCCcceeccCccccccCCCccc-CCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH
Confidence            3678999998641           3356788 99999999999 78899999999999999999 999999999999888


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .++||+|||+++++++|+++++              +|.+||+.|.++++|.+++|++.+++..|+.+++++++.+...
T Consensus       371 -~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  449 (497)
T PRK06145        371 -YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGAT  449 (497)
T ss_pred             -hCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCC
Confidence             5889999999999999999996              8999999999999999999999999988999999999887666


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++|.++|++.
T Consensus       450 ~~~~~l~~~~~~~  462 (497)
T PRK06145        450 LTLEALDRHCRQR  462 (497)
T ss_pred             CCHHHHHHHHHHh
Confidence            7788888888765

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.93  E-value=3.2e-25  Score=177.20  Aligned_cols=144  Identities=25%  Similarity=0.479  Sum_probs=127.3

Q ss_pred             CeeeeccCCcccc----------cccCcCcccc-CCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQ-EHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~-~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||....          ...++|+ |+ ++..++++| ++|+++++|+.|||+++|+. +.||+++++.+...|
T Consensus       327 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~  404 (527)
T TIGR02275       327 LQQVFGMAEGLVNYTRLDDPAEIIFTTQGR-PMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAF  404 (527)
T ss_pred             EEeeeccCccCccccCCCCccccccccCCC-CCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhc
Confidence            4678999996422          1245787 88 589999999 88999999999999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..++||+|||+++++++|++++.              +|.+||++|.+||+|.+++|++.++...++.++++++++++ .
T Consensus       405 ~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~  483 (527)
T TIGR02275       405 DAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-A  483 (527)
T ss_pred             CcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-C
Confidence            88899999999999999999986              89999999999999999999999999989999999998765 4


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+..+|+++|++.
T Consensus       484 ~~~~~l~~~l~~~  496 (527)
T TIGR02275       484 LKAAQLRRFLRER  496 (527)
T ss_pred             CCHHHHHHHHHhC
Confidence            7788999999763

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=3.3e-25  Score=177.48  Aligned_cols=146  Identities=33%  Similarity=0.476  Sum_probs=126.8

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC-
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~-   69 (149)
                      ++..||+||.+..         ...++|. |+++++++++|+++++.++.|..|||+++|+. +.||+++++.+++.|. 
T Consensus       333 ~~~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~  411 (546)
T PRK08314        333 YVEGYGLTETMAQTHSNPPDRPKLQCLGI-PTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIE  411 (546)
T ss_pred             EEecccccccccceecCCCcCCCCCccCc-ccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhh
Confidence            4678999998632         2346777 99999999999778999999999999999999 9999999999888773 


Q ss_pred             --CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          70 --DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        70 --~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                        +++||+|||+++++++|++++.              +|.|||++|.++++|.+++|++.++...++.++++++++++.
T Consensus       412 ~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~  491 (546)
T PRK08314        412 IDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEA  491 (546)
T ss_pred             cCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCC
Confidence              3469999999999999999986              899999999999999999999999998899999999987653


Q ss_pred             --CCCHHHHHHHhhcc
Q psy4966         134 --SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 --~~~~~~l~~~l~~~  147 (149)
                        ..+.++++++|++.
T Consensus       492 ~~~~~~~~l~~~~~~~  507 (546)
T PRK08314        492 RGKTTEEEIIAWAREH  507 (546)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence              35568888888764

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2.8e-25  Score=177.81  Aligned_cols=146  Identities=25%  Similarity=0.404  Sum_probs=125.1

Q ss_pred             CeeeeccCCccccc------------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSKQK------------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~~~------------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++...            ..+.|..+.+++.++++|++++++++.|+.|||+++|++ +.||+++++.++..
T Consensus       322 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~  401 (540)
T PRK06164        322 LTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARA  401 (540)
T ss_pred             eecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhc
Confidence            35789999986321            123455234899999999888999999999999999999 99999999999999


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      |..++||+|||+|+++++|++++.              +|.+||++|.++++|.+++|++++. ..++.+++++++.++.
T Consensus       402 ~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~~~~  480 (540)
T PRK06164        402 LTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPTDGA  480 (540)
T ss_pred             ccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeCCCC
Confidence            988899999999999999999886              8999999999999999999999874 3457788999988777


Q ss_pred             CCCHHHHHHHhhcc
Q psy4966         134 SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~~~l~~~l~~~  147 (149)
                      ..+.+++.++|+++
T Consensus       481 ~~~~~~l~~~~~~~  494 (540)
T PRK06164        481 SPDEAGLMAACREA  494 (540)
T ss_pred             CCCHHHHHHHHHhh
Confidence            78888999888874

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.93  E-value=1.2e-25  Score=182.86  Aligned_cols=127  Identities=29%  Similarity=0.477  Sum_probs=108.0

Q ss_pred             CcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC------------------CCCeEEcC
Q psy4966          17 LTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD------------------DDGWLHTG   77 (149)
Q Consensus        17 ~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~------------------~~~~~~TG   77 (149)
                      ++|+ |+|+++++|+|+++|+++|.|+.|||+++|+. +.|||++++.|++.|.                  .++||+||
T Consensus       403 ~~G~-~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TG  481 (612)
T PRK12476        403 SCGQ-VARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTG  481 (612)
T ss_pred             eCCC-cCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecc
Confidence            6788 99999999999444999999999999999999 9999999999988874                  13599999


Q ss_pred             ceEEEcCCCeEEEE--------------ChHHHHHHHhc-CCCccc--EEEEeeecCCCCCeEEEEEEeCCCC-CCCHHH
Q psy4966          78 DLAYRLPDGTHFII--------------SPCELESIFRQ-HPDVED--VAVIGIPHDVFGELPAAVVVPKPNS-SVTAEE  139 (149)
Q Consensus        78 D~~~~~~~G~~~i~--------------~~~eIE~~l~~-~~~V~~--~~v~~~~~~~~g~~~~a~v~~~~~~-~~~~~~  139 (149)
                      |+|+++ +|+|+|+              +|.|||++|.+ ||.|.+  +++++++++. ++++++++++.++. ..+.++
T Consensus       482 Dlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~  559 (612)
T PRK12476        482 DLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAP  559 (612)
T ss_pred             ccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHH
Confidence            999985 9999997              99999999985 899999  7778888887 88899999987654 256666


Q ss_pred             HHHHhhc
Q psy4966         140 VKQFVEF  146 (149)
Q Consensus       140 l~~~l~~  146 (149)
                      |.++|++
T Consensus       560 l~~~~~~  566 (612)
T PRK12476        560 AIDAIRA  566 (612)
T ss_pred             HHHHHHH
Confidence            6666554

>PRK08315 AMP-binding domain protein; Validated

Probab=99.93  E-value=3.5e-25  Score=177.75  Aligned_cols=145  Identities=37%  Similarity=0.674  Sum_probs=128.9

Q ss_pred             eeeeccCCcccc------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           2 FLVVGLVGKSKQ------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         2 ~~~~g~~e~~~~------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      +..||+||++..            ...++|+ |+|++.++++|++++++++.|+.|||+++|+. +.||++++..++..|
T Consensus       345 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~-p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~  423 (559)
T PRK08315        345 TIAYGMTETSPVSTQTRTDDPLEKRVTTVGR-ALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAI  423 (559)
T ss_pred             eEEEcccccccceeecCcccchhhccCCCCc-cCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcC
Confidence            568999998642            2346787 99999999999665999999999999999999 999999999999888


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..++||+|||+++++++|+++|+              ++.|||++|..+++|.+++|++++++..++.++++|+..++..
T Consensus       424 ~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  503 (559)
T PRK08315        424 DADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGAT  503 (559)
T ss_pred             CCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCC
Confidence            77899999999999999999986              8999999999999999999999999888888999999877766


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.+++++++++.
T Consensus       504 ~~~~~l~~~l~~~  516 (559)
T PRK08315        504 LTEEDVRDFCRGK  516 (559)
T ss_pred             CCHHHHHHHHHhh
Confidence            7888888888764

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.93  E-value=2.7e-25  Score=178.11  Aligned_cols=142  Identities=25%  Similarity=0.446  Sum_probs=126.8

Q ss_pred             CeeeeccCCcccc----------cccCcCcccc-CCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQ-EHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~-~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||....          ...++|+ |+ |++.++++| ++++++++|+.|||+++|+. +.||+++++.+...|
T Consensus       328 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~  405 (536)
T PRK10946        328 LQQVFGMAEGLVNYTRLDDSDERIFTTQGR-PMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF  405 (536)
T ss_pred             EEEeecccccceeeecCCCccccccccCCc-ccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhc
Confidence            3678999996422          2356788 87 899999999 88999999999999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..++||+|||++++|++|++++.              +|.+||+.|.++++|.++++++.++...|+.++++++.+++  
T Consensus       406 ~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--  483 (536)
T PRK10946        406 DANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--  483 (536)
T ss_pred             ccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--
Confidence            88899999999999999999996              89999999999999999999999999889999999998764  


Q ss_pred             CCHHHHHHHhhc
Q psy4966         135 VTAEEVKQFVEF  146 (149)
Q Consensus       135 ~~~~~l~~~l~~  146 (149)
                      .+.+++++++++
T Consensus       484 ~~~~~l~~~~~~  495 (536)
T PRK10946        484 LKAVQLRRFLRE  495 (536)
T ss_pred             CCHHHHHHHHHh
Confidence            778889888876

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.93  E-value=3.3e-25  Score=178.53  Aligned_cols=144  Identities=36%  Similarity=0.574  Sum_probs=126.2

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+..          ...++|+ |++++.++|+| +++.++++|+.|||+++|+. +.|||++++.+.+.|.
T Consensus       361 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~~~v~ivd-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~  438 (562)
T PRK12492        361 IVEGYGLTETSPVASTNPYGELARLGTVGI-PVPGTALKVID-DDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALD  438 (562)
T ss_pred             eeeccCccccCceeeecCCcccccCCccce-ecCCCEEEEEC-CCCCCCCCCCceEEEEeCCccccccccCchhhhhccc
Confidence            3578999997532          2356787 99999999999 78899999999999999999 9999999999999887


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||+++++++|+++|.              +|.+||+.|.+|+.|.++++++.++...|+.++++++..+. ..
T Consensus       439 ~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~  517 (562)
T PRK12492        439 AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-GL  517 (562)
T ss_pred             CCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-CC
Confidence            7899999999999999999996              89999999999999999999999988888989998887643 45


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.+++++++++.
T Consensus       518 ~~~~i~~~~~~~  529 (562)
T PRK12492        518 SVEELKAYCKEN  529 (562)
T ss_pred             CHHHHHHHHHHh
Confidence            677888887754

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2.2e-25  Score=178.34  Aligned_cols=144  Identities=34%  Similarity=0.573  Sum_probs=125.2

Q ss_pred             CeeeeccCCccccc--------------ccCcCccc--cCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchh
Q psy4966           1 MFLVVGLVGKSKQK--------------ATLTGKHF--QEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEA   63 (149)
Q Consensus         1 ~~~~~g~~e~~~~~--------------~~~~g~~p--~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~   63 (149)
                      ++..||+||++...              ..++|. +  .+++.++++| ++++++++|+.|||+++|+. +.||+++++.
T Consensus       323 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~-~g~~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~  400 (534)
T PRK05852        323 VVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL-VGRSTGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTI  400 (534)
T ss_pred             hhhccCccccchhhhcCCccccccccCccccccc-CCCCCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCccc
Confidence            35689999975311              112333 3  6899999999 78899999999999999999 9999999999


Q ss_pred             hhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEe
Q psy4966          64 TKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP  129 (149)
Q Consensus        64 ~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~  129 (149)
                      ++..| .++||+|||++++|+||++++.              +|.+||++|..+|+|.+++|++.++..+|+.++++|+.
T Consensus       401 t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~  479 (534)
T PRK05852        401 TAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVP  479 (534)
T ss_pred             chhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEE
Confidence            99888 5789999999999999999996              89999999999999999999999999899999999998


Q ss_pred             CCCCCCCHHHHHHHhhcc
Q psy4966         130 KPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       130 ~~~~~~~~~~l~~~l~~~  147 (149)
                      ++....+.++|.++|+++
T Consensus       480 ~~~~~~~~~~i~~~~~~~  497 (534)
T PRK05852        480 RESAPPTAEELVQFCRER  497 (534)
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            776667888899888764

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.93  E-value=3.5e-25  Score=178.37  Aligned_cols=142  Identities=34%  Similarity=0.497  Sum_probs=126.1

Q ss_pred             eeccCCcccc----------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhc
Q psy4966           4 VVGLVGKSKQ----------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKE   66 (149)
Q Consensus         4 ~~g~~e~~~~----------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~   66 (149)
                      .||+||++..                ...++|. |+|+++++++|++++++++.|+.|||+++|+. +.||+++++.++.
T Consensus       359 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~-p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~  437 (567)
T PRK06178        359 AWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGL-PVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAE  437 (567)
T ss_pred             ccccccccccceeccccccCccccccCCccccc-ccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhh
Confidence            6999997521                1234687 99999999999878999999999999999999 9999999999988


Q ss_pred             ccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          67 MLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        67 ~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                      .| .+|||+|||+++++++|+++|+              +|.|||++|..+++|.++++++.++...|+.+++++++.++
T Consensus       438 ~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~  516 (567)
T PRK06178        438 AL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPG  516 (567)
T ss_pred             cc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCC
Confidence            87 5789999999999999999986              89999999999999999999999998888999999998877


Q ss_pred             CCCCHHHHHHHhhcc
Q psy4966         133 SSVTAEEVKQFVEFP  147 (149)
Q Consensus       133 ~~~~~~~l~~~l~~~  147 (149)
                      ...+.++|++++++.
T Consensus       517 ~~~~~~~l~~~~~~~  531 (567)
T PRK06178        517 ADLTAAALQAWCREN  531 (567)
T ss_pred             CcCCHHHHHHHHHhc
Confidence            677888899888764

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=5.4e-25  Score=176.50  Aligned_cols=141  Identities=32%  Similarity=0.562  Sum_probs=123.0

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+..          ...++|+ |++++.++++| +++++++.|+.|||+++|+. +.||+  +..+.. + 
T Consensus       340 i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~-p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-  413 (537)
T PRK13382        340 IYNNYNATEAGMIATATPADLRAAPDTAGR-PAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-  413 (537)
T ss_pred             EEecccccccCcceecChhHhccCCCCccc-cCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-
Confidence            3678999998632          2346888 99999999999 78999999999999999999 99998  444444 3 


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||+++++++|+++|.              +|.|||+.|.++|+|.+++|++.++...|+.++++|++.++...
T Consensus       414 ~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~  493 (537)
T PRK13382        414 HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASA  493 (537)
T ss_pred             cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCC
Confidence            3789999999999999999997              89999999999999999999999999889999999998877677


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.++++++|++.
T Consensus       494 ~~~~l~~~l~~~  505 (537)
T PRK13382        494 TPETLKQHVRDN  505 (537)
T ss_pred             CHHHHHHHHHHh
Confidence            788888888764

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.93  E-value=1e-25  Score=181.51  Aligned_cols=115  Identities=33%  Similarity=0.496  Sum_probs=103.8

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      |+.+||+||+++         ...+++|. |+|+++++|.|           .|||+||||+ |.|||++|++|++.|+.
T Consensus       380 i~eGYGlTEts~~~~v~~~~~~~~gtvG~-p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~  447 (613)
T COG1022         380 ILEGYGLTETSAVVSVNPPDRFVLGTVGK-PLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTE  447 (613)
T ss_pred             eEEEecccccccceEEccccCcccCCcCC-cCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccc
Confidence            578999999875         44678898 99999999988           3999999999 99999999999999999


Q ss_pred             CCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      ||||+|||+|.+|++|+|.|+               .|+.||+.+.++|-|++++|++ .+...   +.|+|+++.
T Consensus       448 DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~---~~AlIvp~~  519 (613)
T COG1022         448 DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKF---LVALIVPDF  519 (613)
T ss_pred             cCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcc---eEEEEeCCH
Confidence            999999999999999999997               9999999999999999999999 44443   888888754

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.93  E-value=7.1e-25  Score=176.01  Aligned_cols=142  Identities=30%  Similarity=0.522  Sum_probs=125.5

Q ss_pred             CeeeeccCCccccc-----------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQK-----------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~~-----------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+...           ..++|+ |+|+++++|+| +++++++.|+.|||+++|+. +.||+++++.++.. 
T Consensus       340 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-  416 (547)
T PRK13295        340 IVSAWGMTENGAVTLTKLDDPDERASTTDGC-PLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-  416 (547)
T ss_pred             eEEeccCCCCCCeeeccCCCcchhccCcccc-ccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCccccccC-
Confidence            46789999985321           245677 99999999999 78899999999999999999 99999999988775 


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .+|||+|||+++++++|++++.              +|.+||++|.++++|.+++|+++++...|+.+++++++.++..
T Consensus       417 -~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~  495 (547)
T PRK13295        417 -ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQS  495 (547)
T ss_pred             -CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCC
Confidence             4789999999999999999986              8999999999999999999999999998999999999887766


Q ss_pred             CCHHHHHHHhhc
Q psy4966         135 VTAEEVKQFVEF  146 (149)
Q Consensus       135 ~~~~~l~~~l~~  146 (149)
                      .+.+++.+++++
T Consensus       496 ~~~~~l~~~~~~  507 (547)
T PRK13295        496 LDFEEMVEFLKA  507 (547)
T ss_pred             CCHHHHHHHHHh
Confidence            777888888874

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.93  E-value=8.7e-25  Score=173.34  Aligned_cols=146  Identities=32%  Similarity=0.478  Sum_probs=130.1

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||.+..         ...++|. |+++++++++||+++++++.|+.|||+++|+. +.||+++++.+++.|..
T Consensus       297 ~~~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~  375 (504)
T PRK07514        297 ILERYGMTETNMNTSNPYDGERRAGTVGF-PLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRA  375 (504)
T ss_pred             ceeecccccccccccCCccccccCccccc-CCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhccc
Confidence            3578999997532         2345777 99999999999888999999999999999999 99999999999999977


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      ++||+|||+++++++|++++.              +|.+||++|..+++|.+++++++++...|+.++++++..++...+
T Consensus       376 ~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  455 (504)
T PRK07514        376 DGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALD  455 (504)
T ss_pred             CCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCC
Confidence            899999999999999999886              899999999999999999999999988889999999988776777


Q ss_pred             HHHHHHHhhcc
Q psy4966         137 AEEVKQFVEFP  147 (149)
Q Consensus       137 ~~~l~~~l~~~  147 (149)
                      .+++++.+++.
T Consensus       456 ~~~l~~~~~~~  466 (504)
T PRK07514        456 EAAILAALKGR  466 (504)
T ss_pred             HHHHHHHHHhh
Confidence            88888888764

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.93  E-value=4.8e-25  Score=174.49  Aligned_cols=140  Identities=26%  Similarity=0.529  Sum_probs=122.3

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+.          ....++|+ |++++.++|+| ++|.++++|+.|||+++|+. +.||++++..+.+.+ 
T Consensus       282 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-  358 (487)
T PRK07638        282 LYEFYGASELSFVTALVDEESERRPNSVGR-PFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-  358 (487)
T ss_pred             EEEEecCCccCceEEecccccCCCCCCCCc-ccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-
Confidence            367899999863          23456888 99999999999 88999999999999999999 999999998877655 


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||++++|++|++++.              +|.|||++|.++|+|.+++|++.+++..|+.++++++.    ..
T Consensus       359 ~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~  434 (487)
T PRK07638        359 ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SA  434 (487)
T ss_pred             cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CC
Confidence            6899999999999999999986              89999999999999999999999999889988888864    35


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.++++++|++.
T Consensus       435 ~~~~l~~~~~~~  446 (487)
T PRK07638        435 TKQQLKSFCLQR  446 (487)
T ss_pred             CHHHHHHHHHHH
Confidence            667788877654

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.93  E-value=4.2e-25  Score=176.38  Aligned_cols=143  Identities=33%  Similarity=0.555  Sum_probs=127.1

Q ss_pred             eeeeccCCcccc-----------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchh
Q psy4966           2 FLVVGLVGKSKQ-----------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEA   63 (149)
Q Consensus         2 ~~~~g~~e~~~~-----------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~   63 (149)
                      +..||+||.+..                 ...++|. |++++.++++| +++++++.|+.|||+++|+. +.||+++++.
T Consensus       309 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~  386 (528)
T PRK07470        309 VQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGF-ERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEA  386 (528)
T ss_pred             HHhCCCcccCCceeecchhhccccccccceeeccCc-ccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHH
Confidence            467999997532                 1246777 99999999999 78999999999999999999 9999999999


Q ss_pred             hhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEe
Q psy4966          64 TKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP  129 (149)
Q Consensus        64 ~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~  129 (149)
                      +++.| .++||+|||+++++++|++++.              +|.+||++|.+++.|.+++|++.+++..|+.++++++.
T Consensus       387 ~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~  465 (528)
T PRK07470        387 NAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVA  465 (528)
T ss_pred             HHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEE
Confidence            98887 5899999999999999999986              89999999999999999999999999888889999988


Q ss_pred             CCCCCCCHHHHHHHhhcc
Q psy4966         130 KPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       130 ~~~~~~~~~~l~~~l~~~  147 (149)
                      .++...+.+.++++|++.
T Consensus       466 ~~~~~~~~~~~~~~l~~~  483 (528)
T PRK07470        466 RDGAPVDEAELLAWLDGK  483 (528)
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            877667888898888764

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.1e-24  Score=174.70  Aligned_cols=143  Identities=29%  Similarity=0.453  Sum_probs=126.1

Q ss_pred             CeeeeccCCcccc-------cccCcCccccCCceEEEEcCCCCccCCCCC------------eeEEEE-EcCC-CccccC
Q psy4966           1 MFLVVGLVGKSKQ-------KATLTGKHFQEHNAIKIIDPVTSVQLPDGK------------TGELCL-KGDV-FLGYRN   59 (149)
Q Consensus         1 ~~~~~g~~e~~~~-------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~------------~Gel~v-~~~~-~~gY~~   59 (149)
                      ++..||+||.+..       ...++|. |+++  +++++++++.+++.|.            .|||++ +|+. +.||++
T Consensus       293 l~~~YG~TE~~~~~~~~~~~~~~~~g~-~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~  369 (529)
T PRK07867        293 VVDGFGSTEGGVAITRTPDTPPGALGP-LPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYN  369 (529)
T ss_pred             EEEeecccccccccccCCCCCCCCcCC-CCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccC
Confidence            3678999997532       2345777 8898  6788867788899888            999999 9999 999999


Q ss_pred             CchhhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEE
Q psy4966          60 KVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA  125 (149)
Q Consensus        60 ~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a  125 (149)
                      +++.+...| .++||+|||+++++++|+++|.              +|.|||++|.+||+|.+++|++.+++..|+++++
T Consensus       370 ~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a  448 (529)
T PRK07867        370 DPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMA  448 (529)
T ss_pred             ChHhhhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEE
Confidence            999998888 5899999999999999999986              8999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHhhcc
Q psy4966         126 VVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       126 ~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                      ++++.++...+.++++++|+++
T Consensus       449 ~vv~~~~~~~~~~~l~~~~~~~  470 (529)
T PRK07867        449 ALVLAPGAKFDPDAFAEFLAAQ  470 (529)
T ss_pred             EEEECCCCCCCHHHHHHHHHhh
Confidence            9999888778999999998763

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.93  E-value=5.2e-25  Score=181.70  Aligned_cols=142  Identities=18%  Similarity=0.303  Sum_probs=120.3

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||.+..         ...++|+ |+++++++++| ++++++++|+.|||+++|+. +.|||++++.+   +..
T Consensus       289 ~~~~YG~tE~~~~~~~~~~~~~~~~~iG~-p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~---~~~  363 (705)
T PRK06060        289 ILDGIGSTEVGQTFVSNRVDEWRLGTLGR-VLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSP---VAN  363 (705)
T ss_pred             eEeeeeccccCceEEeccCCCCCcCcccc-cCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCccc---ccC
Confidence            4678999998531         2346788 99999999999 78999999999999999999 99999999865   335


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      ++||+|||+++++++|+++|+              +|.|||++|.+|+.|.+++|+++++...++.++++++...+...+
T Consensus       364 ~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~  443 (705)
T PRK06060        364 EGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATID  443 (705)
T ss_pred             CCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcC
Confidence            799999999999999999986              899999999999999999999999988888999999987654444


Q ss_pred             H---HHHHHHhhcc
Q psy4966         137 A---EEVKQFVEFP  147 (149)
Q Consensus       137 ~---~~l~~~l~~~  147 (149)
                      .   ++++++|++.
T Consensus       444 ~~~~~~i~~~l~~~  457 (705)
T PRK06060        444 GSVMRDLHRGLLNR  457 (705)
T ss_pred             hHHHHHHHHHHHHh
Confidence            3   3566666543

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.93  E-value=1.3e-24  Score=174.14  Aligned_cols=142  Identities=31%  Similarity=0.558  Sum_probs=125.0

Q ss_pred             CeeeeccCCccccc-----------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQK-----------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~~-----------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+...           ..++|+ |+|++.+++++ +++++++.|+.|||+++|+. +.||+++++.+..  
T Consensus       338 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~--  413 (538)
T TIGR03208       338 IVSAWGMTENGAVTVTEPDDALEKASTTDGR-PLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST--  413 (538)
T ss_pred             EEeeeccCcCCCccccCcccchhhccCcccc-cCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCcccccc--
Confidence            46789999975321           235677 99999999999 78999999999999999999 9999999987653  


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..++||+|||++++|++|+++++              +|.|||++|.+|++|.+++|++.++...|+.+++++++..+..
T Consensus       414 ~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~  493 (538)
T TIGR03208       414 DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCT  493 (538)
T ss_pred             cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCC
Confidence            46899999999999999999986              8999999999999999999999999888999999999987777


Q ss_pred             CCHHHHHHHhhc
Q psy4966         135 VTAEEVKQFVEF  146 (149)
Q Consensus       135 ~~~~~l~~~l~~  146 (149)
                      .+..++.+++++
T Consensus       494 ~~~~~l~~~~~~  505 (538)
T TIGR03208       494 LDFAAMVAFLKA  505 (538)
T ss_pred             CCHHHHHHHHHh
Confidence            888889888874

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=1.5e-24  Score=173.93  Aligned_cols=145  Identities=36%  Similarity=0.631  Sum_probs=128.7

Q ss_pred             CeeeeccCCcccc------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSKQ------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~~------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||.+..            ...++|+ |+|++.++++| +++++++.|+.|||+++|+. +.||++++..+...
T Consensus       346 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~-p~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~  423 (558)
T PRK12583        346 VQIAYGMTETSPVSLQTTAADDLERRVETVGR-TQPHLEVKVVD-PDGATVPRGEIGELCTRGYSVMKGYWNNPEATAES  423 (558)
T ss_pred             eeccccccccccceeccCcccccccccCCCCc-cCCCCeEEEEC-CCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhh
Confidence            3567999998642            2356787 99999999999 55899999999999999999 99999999999888


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      |..++||+|||+++++++|++++.              +|.+||+.|..+++|.+++|+++++...++.+++++++.++.
T Consensus       424 ~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  503 (558)
T PRK12583        424 IDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGH  503 (558)
T ss_pred             cCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCC
Confidence            867899999999999999999996              899999999999999999999999998889999999988766


Q ss_pred             CCCHHHHHHHhhcc
Q psy4966         134 SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~~~l~~~l~~~  147 (149)
                      ..+.++|+++|++.
T Consensus       504 ~~~~~~i~~~~~~~  517 (558)
T PRK12583        504 AASEEELREFCKAR  517 (558)
T ss_pred             CCCHHHHHHHHHhh
Confidence            67788888888764

>KOG1256|consensus

Probab=99.93  E-value=1.7e-25  Score=179.58  Aligned_cols=129  Identities=35%  Similarity=0.595  Sum_probs=116.5

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||+++         ...+++|. |+|+++++++|+++.+--+.+..|||+|||+. |.|||++|++|++.++.
T Consensus       447 v~eGYGlTEts~g~~~~~~~d~~lgsvG~-p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ide  525 (691)
T KOG1256|consen  447 VLEGYGLTETSAGTTLTLPGDNVLGSVGP-PVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDE  525 (691)
T ss_pred             eeecccccccCCceEeccCCCCCCCCcCC-cccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhcc
Confidence            467899999983         34677898 99999999999888888888889999999999 99999999999999999


Q ss_pred             CCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      +||++|||+|+++++|.|.|.               .|+.||++..+.+.|.+.+|++-....+   ++|+|+++...
T Consensus       526 DGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~---LvaiVvpd~e~  600 (691)
T KOG1256|consen  526 DGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSF---LVAIVVPDPEV  600 (691)
T ss_pred             ccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhc---EEEEEecChhh
Confidence            999999999999999999997               8999999999999999999998766655   99999986543

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.93  E-value=1.1e-24  Score=177.54  Aligned_cols=146  Identities=22%  Similarity=0.255  Sum_probs=121.7

Q ss_pred             CeeeeccCCccc-------------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcC---C-CccccCCchh
Q psy4966           1 MFLVVGLVGKSK-------------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD---V-FLGYRNKVEA   63 (149)
Q Consensus         1 ~~~~~g~~e~~~-------------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~---~-~~gY~~~~~~   63 (149)
                      ++..||+||++.             ...+++|+ |+|+++++++|+++|+++++|+.|||+++||   . +.+||++++.
T Consensus       383 v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~-p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~  461 (629)
T PRK10524        383 VIDNYWQTETGWPILAIARGVEDRPTRLGSPGV-PMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDR  461 (629)
T ss_pred             eEeccccccccchhhcCCCCcccCcCCCCCccc-CcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHH
Confidence            357899999851             12356788 9999999999944899999999999999997   4 8899999987


Q ss_pred             hhcccC---CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEE
Q psy4966          64 TKEMLD---DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV  126 (149)
Q Consensus        64 ~~~~~~---~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~  126 (149)
                      +...+.   .++||+|||++++|++|+++|+              +|.|||++|.+||+|.+++|++++++..|+.++++
T Consensus       462 ~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~  541 (629)
T PRK10524        462 FVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAF  541 (629)
T ss_pred             HHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEE
Confidence            765442   4689999999999999999997              89999999999999999999999999999999999


Q ss_pred             EEeCCCCCCC--------HHHHHHHhhcc
Q psy4966         127 VVPKPNSSVT--------AEEVKQFVEFP  147 (149)
Q Consensus       127 v~~~~~~~~~--------~~~l~~~l~~~  147 (149)
                      ++++++...+        .++|++++++.
T Consensus       542 vv~~~~~~~~~~~~~~~~~~~i~~~~~~~  570 (629)
T PRK10524        542 VVPKDSDSLADREARLALEKEIMALVDSQ  570 (629)
T ss_pred             EEECCCCccccccchHHHHHHHHHHHHhh
Confidence            9988654332        34566666653

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=1.1e-24  Score=175.25  Aligned_cols=144  Identities=31%  Similarity=0.483  Sum_probs=126.5

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+..          ...++|. |++++.++++| +++++++.|+.|||+++|+. +.||+++++.+...|.
T Consensus       355 ~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~-p~~g~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~  432 (557)
T PRK07059        355 ITEGYGLSETSPVATCNPVDATEFSGTIGL-PLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMT  432 (557)
T ss_pred             eeeccccccccchhhcCCCCCCCcCCcccC-ccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcc
Confidence            4678999998642          2356788 99999999999 88999999999999999999 9999999999998887


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .+|||+|||+++++++|+++++              +|.+||++|..+++|.+++|++.++...|+.++++++... ...
T Consensus       433 ~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~~~  511 (557)
T PRK07059        433 ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PAL  511 (557)
T ss_pred             cCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-CCC
Confidence            7899999999999999999986              8999999999999999999999999888898998888654 346


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.++++++|++.
T Consensus       512 ~~~~l~~~~~~~  523 (557)
T PRK07059        512 TEEDVKAFCKER  523 (557)
T ss_pred             CHHHHHHHHHHh
Confidence            677888877654

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=1.5e-24  Score=172.27  Aligned_cols=143  Identities=26%  Similarity=0.346  Sum_probs=122.1

Q ss_pred             eeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           2 FLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         2 ~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      +..||++|.+.          ....++|+ |+++ .++++| ++++++++|+.|||+++|+. +.||+++++.++..+..
T Consensus       299 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~  375 (501)
T PRK13390        299 YEYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHP  375 (501)
T ss_pred             eeeecccccCceEEecchhhccCCCCcCC-cccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhcc
Confidence            56899999863          12456788 9999 699999 88999999999999999999 99999999999887743


Q ss_pred             --CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          71 --DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        71 --~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                        ++|++|||++++|++|++++.              +|.|||++|.+|++|.++++++++++..|+.+++++++.++..
T Consensus       376 ~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~  455 (501)
T PRK13390        376 AHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIR  455 (501)
T ss_pred             CCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCC
Confidence              679999999999999999996              8999999999999999999999999999999999999876543


Q ss_pred             CC---HHHHHHHhhcc
Q psy4966         135 VT---AEEVKQFVEFP  147 (149)
Q Consensus       135 ~~---~~~l~~~l~~~  147 (149)
                      .+   .++|.+++++.
T Consensus       456 ~~~~~~~~l~~~~~~~  471 (501)
T PRK13390        456 GSDELARELIDYTRSR  471 (501)
T ss_pred             cchhhHHHHHHHHHHh
Confidence            33   34666666543

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.5e-24  Score=171.19  Aligned_cols=143  Identities=33%  Similarity=0.535  Sum_probs=123.8

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCC-CCC-eeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLP-DGK-TGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~-~g~-~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++..         ...++|+ |++++.++|+| +++.+++ .+. .|||+++|+. +.||+++++.++..|
T Consensus       269 ~~~~YG~tE~~~~~~~~~~~~~~~~~vG~-~~~g~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~  346 (471)
T PRK07787        269 PVERYGMTETLITLSTRADGERRPGWVGL-PLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAF  346 (471)
T ss_pred             eecccCccccCcceecCCCCcccCCcccc-cCCCcEEEEEC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcc
Confidence            3678999998642         2346787 99999999999 6788887 344 8999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      ..++||+|||+++++++|++++.               +|.+||++|..++.|++++|++.++...++.++++++...  
T Consensus       347 ~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--  424 (471)
T PRK07787        347 TADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGAD--  424 (471)
T ss_pred             cCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCC--
Confidence            77899999999999999999886               8999999999999999999999999888899999998743  


Q ss_pred             CCCHHHHHHHhhcc
Q psy4966         134 SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~~~l~~~l~~~  147 (149)
                      ..+.+++.++|++.
T Consensus       425 ~~~~~~l~~~l~~~  438 (471)
T PRK07787        425 DVAADELIDFVAQQ  438 (471)
T ss_pred             CCCHHHHHHHHHhh
Confidence            46778888888764

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.93  E-value=9.1e-25  Score=179.04  Aligned_cols=142  Identities=17%  Similarity=0.179  Sum_probs=117.3

Q ss_pred             eeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcC--C-CccccCCchhhh---c
Q psy4966           3 LVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--V-FLGYRNKVEATK---E   66 (149)
Q Consensus         3 ~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--~-~~gY~~~~~~~~---~   66 (149)
                      ..||+||...          ...+++|+ |.++++++++| ++|+++ +|+.|||+++++  . +.|||++++.+.   .
T Consensus       416 ~~yG~TE~~~~~~~~~~~~~~~~g~~g~-p~~g~~v~ivd-~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~  492 (652)
T TIGR01217       416 SISGGTDICSCFAGANPTLPVHIGEIQA-PGLGTAVQSWD-PEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDA  492 (652)
T ss_pred             eccCHHHHhccccCCCCCCCCcCCccCC-CcCCCceEEEC-CCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHh
Confidence            4588888531          22356677 99999999999 888888 599999999996  4 899999998553   2


Q ss_pred             ccC-CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          67 MLD-DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        67 ~~~-~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      .|. .+|||+|||+|++|+||+++|+              +|.|||++|.+||+|.+++|++++++.+|+.+++||++.+
T Consensus       493 ~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~  572 (652)
T TIGR01217       493 YFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAP  572 (652)
T ss_pred             hhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECC
Confidence            222 2689999999999999999997              8999999999999999999999999999999999999987


Q ss_pred             CCCCCH---HHHHHHhhcc
Q psy4966         132 NSSVTA---EEVKQFVEFP  147 (149)
Q Consensus       132 ~~~~~~---~~l~~~l~~~  147 (149)
                      +...+.   ++|+++|++.
T Consensus       573 ~~~~~~~~~~~l~~~~~~~  591 (652)
T TIGR01217       573 GATLDDALLDRIKRTIRAG  591 (652)
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            765554   4677777653

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=1.5e-24  Score=174.90  Aligned_cols=145  Identities=33%  Similarity=0.578  Sum_probs=127.8

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcCCC-CccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVT-SVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~-g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+.          ....++|. |+|++.++++|+++ +.+++.|..|||+++|+. +.||+++++.+...|
T Consensus       364 i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  442 (573)
T PRK05605        364 LVEGYGLTETSPIIVGNPMSDDRRPGYVGV-PFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF  442 (573)
T ss_pred             eecccccchhchhhhcCCcccCCcCCcccc-CCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcc
Confidence            367899999862          12346787 99999999999655 688999999999999999 999999999999888


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      . ++||+|||+++++++|++++.              +|.+||++|..++.|.++++++.++...++.+++++++.++..
T Consensus       443 ~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~  521 (573)
T PRK05605        443 L-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA  521 (573)
T ss_pred             c-CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCC
Confidence            4 679999999999999999986              8999999999999999999999999888899999999988777


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++|++++++.
T Consensus       522 ~~~~~l~~~~~~~  534 (573)
T PRK05605        522 LDPEGLRAYCREH  534 (573)
T ss_pred             CCHHHHHHHHHHh
Confidence            7888888888764

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.93  E-value=1.1e-24  Score=174.90  Aligned_cols=140  Identities=22%  Similarity=0.257  Sum_probs=111.0

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc-
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML-   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~-   68 (149)
                      ++..||+||.+..          ...++|+ |+++++++++|++++.++++|+.|||+++|+. +.|||++++.+.... 
T Consensus       328 i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~-p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~  406 (539)
T PRK06334        328 LRQGYGTTECSPVITINTVNSPKHESCVGM-PIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVEL  406 (539)
T ss_pred             EEecccccccCceEEeccCCCCCCCCcCce-ecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceee
Confidence            3578999998631          2245787 99999999999667899999999999999999 999999998654322 


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCccc------EEEEeeecCCCCCeEEEEEE
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVED------VAVIGIPHDVFGELPAAVVV  128 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~------~~v~~~~~~~~g~~~~a~v~  128 (149)
                      ..++||+|||+|++|++|+++|.              +|.|||++|.+||+|.+      ++|+++++..  ..++++++
T Consensus       407 ~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~  484 (539)
T PRK06334        407 GGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTT  484 (539)
T ss_pred             CCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEe
Confidence            24689999999999999999997              99999999999999987      6777776432  34445544


Q ss_pred             eCCCCCCCHHHHHHHhhcc
Q psy4966         129 PKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       129 ~~~~~~~~~~~l~~~l~~~  147 (149)
                      ..    .+.++++++|+++
T Consensus       485 ~~----~~~~~~~~~l~~~  499 (539)
T PRK06334        485 FP----TSISEVNDILKNS  499 (539)
T ss_pred             cc----CChHHHHHHHHhc
Confidence            32    3567788888764

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.93  E-value=6.4e-25  Score=181.12  Aligned_cols=127  Identities=26%  Similarity=0.352  Sum_probs=104.7

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCC-ccC--CCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTS-VQL--PDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g-~~~--~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++.         ...+++|+ |+|+++++|+|++++ ..+  +++..|||+++|++ |.|||++|+.|++.
T Consensus       448 v~~~YG~TEt~~~~~~~~~~~~~~gsvG~-p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~  526 (696)
T PLN02387        448 IGQGYGLTETCAGATFSEWDDTSVGRVGP-PLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEV  526 (696)
T ss_pred             eeEeechhhcccceeecCcccCCCCccCC-CCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhh
Confidence            467899999863         23467888 999999999995444 222  34457999999999 99999999999998


Q ss_pred             cC--CCC--eEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEE
Q psy4966          68 LD--DDG--WLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV  128 (149)
Q Consensus        68 ~~--~~~--~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~  128 (149)
                      |.  .+|  ||+|||+|++|+||+++|+               +|.|||++|.+||.|.+++|++.+..   ..++|+|+
T Consensus       527 f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv  603 (696)
T PLN02387        527 YKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVALVV  603 (696)
T ss_pred             hccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEE
Confidence            83  345  9999999999999999997               89999999999999999999986533   34788888


Q ss_pred             eCC
Q psy4966         129 PKP  131 (149)
Q Consensus       129 ~~~  131 (149)
                      +++
T Consensus       604 ~~~  606 (696)
T PLN02387        604 PSQ  606 (696)
T ss_pred             eCH
Confidence            753

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=1.1e-24  Score=186.99  Aligned_cols=142  Identities=26%  Similarity=0.309  Sum_probs=122.2

Q ss_pred             CeeeeccCCcccc-------------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCC
Q psy4966           1 MFLVVGLVGKSKQ-------------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNK   60 (149)
Q Consensus         1 ~~~~~g~~e~~~~-------------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~   60 (149)
                      ++..||+||++..                   ...++|+ |+|+++++++|+++++++|+|+.|||+++|+. +.||+++
T Consensus       926 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~ 1004 (1146)
T PRK08633        926 ILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGM-PLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGD 1004 (1146)
T ss_pred             eecccccccCcceEEEecCcccccccccccCCCCCCccc-cCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCC
Confidence            3578999997531                   2456888 99999999999888999999999999999999 9999999


Q ss_pred             chhhhcccCC---CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCC--CcccEEEEeeecCCCCC
Q psy4966          61 VEATKEMLDD---DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHP--DVEDVAVIGIPHDVFGE  121 (149)
Q Consensus        61 ~~~~~~~~~~---~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~--~V~~~~v~~~~~~~~g~  121 (149)
                      ++.+++.+.+   ++||+|||++++|+||++++.              +|.|||++|.+|+  .+.+++|++++++..|+
T Consensus      1005 ~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~ 1084 (1146)
T PRK08633       1005 PEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGE 1084 (1146)
T ss_pred             ccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCc
Confidence            9999888742   389999999999999999996              8999999999998  46789999999999999


Q ss_pred             eEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966         122 LPAAVVVPKPNSSVTAEEVKQFVEF  146 (149)
Q Consensus       122 ~~~a~v~~~~~~~~~~~~l~~~l~~  146 (149)
                      .++++++..   ..+.+++++++++
T Consensus      1085 ~~~~~v~~~---~~~~~~l~~~~~~ 1106 (1146)
T PRK08633       1085 KLVVLHTCG---AEDVEELKRAIKE 1106 (1146)
T ss_pred             EEEEEEecC---ccCHHHHHHHHHh
Confidence            999988862   3466778877764

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=2.7e-24  Score=170.64  Aligned_cols=145  Identities=35%  Similarity=0.564  Sum_probs=129.4

Q ss_pred             CeeeeccCCcccc------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSKQ------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~~------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++..            ...++|. |+++++++++| +++++++.|+.|||+++|+. +.||++++..+...
T Consensus       310 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~-~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~  387 (513)
T PRK07656        310 VLTGYGLSEASGVTTFNRLDDDRKTVAGTIGT-AIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAA  387 (513)
T ss_pred             eEeEEccccCCCceeecCccccccccCCCccc-cCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhh
Confidence            3678999999521            1456887 99999999999 78999999999999999999 99999999999988


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      +..++||+|||+++++++|+++++              ++.+||+.|.++++|.+++|++.++...|+.++++++..++.
T Consensus       388 ~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~  467 (513)
T PRK07656        388 IDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA  467 (513)
T ss_pred             hccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC
Confidence            866899999999999999999986              899999999999999999999999988899999999988766


Q ss_pred             CCCHHHHHHHhhcc
Q psy4966         134 SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~~~l~~~l~~~  147 (149)
                      ..+.++|.++|++.
T Consensus       468 ~~~~~~l~~~~~~~  481 (513)
T PRK07656        468 ELTEEELIAYCREH  481 (513)
T ss_pred             CCCHHHHHHHHHhh
Confidence            78888898888764

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.92  E-value=2.2e-24  Score=172.93  Aligned_cols=143  Identities=34%  Similarity=0.516  Sum_probs=125.7

Q ss_pred             CeeeeccCCccccc-----------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQK-----------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~~-----------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++...           ..+.|. |++++.++++| +++.+++.|..|||+++|+. +.||+++++.+...+
T Consensus       329 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~  406 (547)
T PRK06087        329 LLSVYGSTESSPHAVVNLDDPLSRFMHTDGY-AAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARAL  406 (547)
T ss_pred             EEEEecccccCCccccCCCcchhhcCCcCCc-cCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHh
Confidence            46789999986321           234677 99999999999 88999999999999999999 999999999999988


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC-CC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP-NS  133 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~-~~  133 (149)
                      ..++||+|||+++++++|+++++              +|.+||++|..+++|.++++++.+++..|++++++++..+ +.
T Consensus       407 ~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~  486 (547)
T PRK06087        407 DEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH  486 (547)
T ss_pred             CCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC
Confidence            77899999999999999999996              8999999999999999999999999999999999999875 44


Q ss_pred             CCCHHHHHHHhh
Q psy4966         134 SVTAEEVKQFVE  145 (149)
Q Consensus       134 ~~~~~~l~~~l~  145 (149)
                      ..+.+++.+++.
T Consensus       487 ~~~~~~~~~~~~  498 (547)
T PRK06087        487 SLTLEEVVAFFS  498 (547)
T ss_pred             CCCHHHHHHHHH
Confidence            556777777764

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.92  E-value=2.4e-24  Score=171.83  Aligned_cols=143  Identities=35%  Similarity=0.618  Sum_probs=127.4

Q ss_pred             eeeeccCCccc---------------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           2 FLVVGLVGKSK---------------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         2 ~~~~g~~e~~~---------------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      +..||+||.+.               ....++|+ |+|++.++++| +++++++.|+.|||+++|+. +.||++++..+.
T Consensus       310 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~-p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~  387 (524)
T PRK06188        310 AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGR-PTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETA  387 (524)
T ss_pred             hheeCccccCCceeecCchhccccccccCCcccc-ccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhh
Confidence            56899999842               12346787 99999999999 77999999999999999999 999999999998


Q ss_pred             cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      ..| .++||+|||+++++++|++++.              +|.+||++|.++++|.+++|++.+++..++.+++++++.+
T Consensus       388 ~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  466 (524)
T PRK06188        388 EAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRP  466 (524)
T ss_pred             hhh-cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECC
Confidence            888 5899999999999999999986              8999999999999999999999999888999999999887


Q ss_pred             CCCCCHHHHHHHhhcc
Q psy4966         132 NSSVTAEEVKQFVEFP  147 (149)
Q Consensus       132 ~~~~~~~~l~~~l~~~  147 (149)
                      ....+.++|+++|++.
T Consensus       467 ~~~~~~~~l~~~~~~~  482 (524)
T PRK06188        467 GAAVDAAELQAHVKER  482 (524)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            7677788888888765

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.92  E-value=1.8e-24  Score=177.12  Aligned_cols=143  Identities=17%  Similarity=0.129  Sum_probs=118.0

Q ss_pred             eeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcC--C-CccccCCchhhh--c
Q psy4966           2 FLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--V-FLGYRNKVEATK--E   66 (149)
Q Consensus         2 ~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--~-~~gY~~~~~~~~--~   66 (149)
                      +..||+||.+.          ...+++|+ |+++++++|+| ++|+++ .|+.|||+++++  . +.|||++++.+.  .
T Consensus       414 ~~~yG~TE~~~~~~~~~~~~~~~~g~~g~-p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~  490 (655)
T PRK03584        414 ASISGGTDICSCFVGGNPLLPVYRGEIQC-RGLGMAVEAWD-EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRD  490 (655)
T ss_pred             EeccChHhhhcccccCCCCCCcCCCccCC-CcCCceeEEEC-CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHH
Confidence            45688888642          23456787 99999999999 888888 799999999996  5 899999987543  1


Q ss_pred             -ccC-CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          67 -MLD-DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        67 -~~~-~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                       .|. .++||+|||++++|+||+++|+              +|.|||++|.+||+|.+|+|++.+++..|+.++++|++.
T Consensus       491 ~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~  570 (655)
T PRK03584        491 AYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLA  570 (655)
T ss_pred             hhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEEC
Confidence             121 2579999999999999999997              899999999999999999999999999999999999998


Q ss_pred             CCCCCCH---HHHHHHhhcc
Q psy4966         131 PNSSVTA---EEVKQFVEFP  147 (149)
Q Consensus       131 ~~~~~~~---~~l~~~l~~~  147 (149)
                      ++...+.   ++|+++|++.
T Consensus       571 ~~~~~~~~~~~~l~~~~~~~  590 (655)
T PRK03584        571 EGVTLDDALRARIRTTIRTN  590 (655)
T ss_pred             CCCCCcHHHHHHHHHHHHhh
Confidence            7655553   4677777654

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.92  E-value=1.4e-24  Score=173.76  Aligned_cols=122  Identities=21%  Similarity=0.329  Sum_probs=99.5

Q ss_pred             cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE---
Q psy4966          16 TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII---   91 (149)
Q Consensus        16 ~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~---   91 (149)
                      .++|+ |+|+++++|+|++.+.+++.|+.|||+++|+. +.|||++++.+     .++||+|||+++++ +|+++|+   
T Consensus       345 ~~vG~-p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~  417 (525)
T PRK05851        345 AVLGN-PIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRA  417 (525)
T ss_pred             eeecC-CCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeec
Confidence            35788 99999999999444467899999999999999 99999998642     47899999999997 7999987   


Q ss_pred             -----------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhh
Q psy4966          92 -----------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE  145 (149)
Q Consensus        92 -----------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~  145 (149)
                                 +|.|||++|.+||+|.+++|++++++.+++.+.++++.... ..+.+.+.++|+
T Consensus       418 dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~  481 (525)
T PRK05851        418 KELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFR-GPDEAGARSEVV  481 (525)
T ss_pred             CCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEec-CcchHHHHHHHH
Confidence                       99999999999999999999999998888887777665321 233344444443

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.92  E-value=2.8e-24  Score=170.86  Aligned_cols=144  Identities=28%  Similarity=0.478  Sum_probs=128.5

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||++|++.           ....++|+ |+++++++|+| +++++++.|+.|||+++|+. +.||+++++.++..|
T Consensus       315 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~  392 (523)
T PRK08316        315 FYNCYGQTEIAPLATVLGPEEHLRRPGSAGR-PVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF  392 (523)
T ss_pred             eeeeecccccCccccccCccccccccCCccc-CCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh
Confidence            367899999864           22356788 99999999999 78999999999999999999 999999999999888


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .++||+|||+|+++++|++++.              +|.+||+.|.++++|.+++|++.+++..++.++++++..++..
T Consensus       393 -~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  471 (523)
T PRK08316        393 -RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGAT  471 (523)
T ss_pred             -hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCC
Confidence             6899999999999999999986              8999999999999999999999999998999999999987766


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.+.+.+++++.
T Consensus       472 ~~~~~l~~~~~~~  484 (523)
T PRK08316        472 VTEDELIAHCRAR  484 (523)
T ss_pred             CCHHHHHHHHHHh
Confidence            7778888887653

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=2.5e-24  Score=173.24  Aligned_cols=145  Identities=34%  Similarity=0.517  Sum_probs=128.9

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+..          ..+++|. |++++.+++++++++.+++.|..|||+++|+. +.||+++++.+...+ 
T Consensus       351 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-  428 (563)
T PRK06710        351 LVEGYGLTESSPVTHSNFLWEKRVPGSIGV-PWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-  428 (563)
T ss_pred             EecccccccCccccccCcccccccCCccCC-CCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc-
Confidence            3578999998642          2345677 99999999999778899999999999999999 999999999998887 


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||+++++++|++++.              +|.+||++|.+++.|.+++|++.++...|+.++++++..++...
T Consensus       429 ~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~  508 (563)
T PRK06710        429 QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTEC  508 (563)
T ss_pred             ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCC
Confidence            5899999999999999999886              89999999999999999999999999889999999998887777


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.++++++++++
T Consensus       509 ~~~~l~~~~~~~  520 (563)
T PRK06710        509 SEEELNQFARKY  520 (563)
T ss_pred             CHHHHHHHHHHh
Confidence            888888888764

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.92  E-value=3.1e-24  Score=172.54  Aligned_cols=144  Identities=34%  Similarity=0.540  Sum_probs=125.1

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+..          ...++|. |++++.++++| +++++++.|+.|||+++|+. +.||+++++.+++.|.
T Consensus       357 ~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~-~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  434 (560)
T PRK08751        357 LVEAYGLTETSPAACINPLTLKEYNGSIGL-PIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMD  434 (560)
T ss_pred             EEEeeccccCCCceecccccccccCCCcCc-cCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhccc
Confidence            3678999998632          2345777 99999999999 88999999999999999999 9999999999999887


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||+++++++|++++.              +|.+||++|..+++|.+++|+++++...|+.+.++++.. +...
T Consensus       435 ~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~~  513 (560)
T PRK08751        435 ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPAL  513 (560)
T ss_pred             cCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCCC
Confidence            7899999999999999999986              899999999999999999999999988888888877754 4456


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.+++++.+++.
T Consensus       514 ~~~~l~~~~~~~  525 (560)
T PRK08751        514 TAEDVKAHARAN  525 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            777787777654

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.92  E-value=4.2e-24  Score=169.72  Aligned_cols=145  Identities=22%  Similarity=0.365  Sum_probs=126.7

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||...          ....++|+ |+|++.+++++ +++++++.|+.|||+++|+. +.|||++++.+...|.
T Consensus       303 ~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~-~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~  380 (515)
T TIGR03098       303 LFLMYGLTEAFRSTYLPPEEVDRRPDSIGK-AIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFR  380 (515)
T ss_pred             EeeeeccccccceEecccccccCCCCCcce-ecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhh
Confidence            467899999852          23457888 99999999999 78999999999999999999 9999999988876653


Q ss_pred             C-----------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966          70 D-----------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA  124 (149)
Q Consensus        70 ~-----------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~  124 (149)
                      .           ++||+|||+++++++|++++.              +|.+||++|..++.|.+++|++.+++..|+.++
T Consensus       381 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  460 (515)
T TIGR03098       381 PLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIV  460 (515)
T ss_pred             ccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEE
Confidence            2           348999999999999999986              899999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHhhcc
Q psy4966         125 AVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       125 a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                      ++++.......+.++|+++|++.
T Consensus       461 ~~~~~~~~~~~~~~~l~~~l~~~  483 (515)
T TIGR03098       461 LVVTPPGGEELDRAALLAECRAR  483 (515)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhh
Confidence            99987766677888888888764

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.92  E-value=4.2e-24  Score=171.46  Aligned_cols=129  Identities=31%  Similarity=0.467  Sum_probs=111.1

Q ss_pred             CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCc-cC-----CCCCeeEEEEEcCC-CccccC
Q psy4966           1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSV-QL-----PDGKTGELCLKGDV-FLGYRN   59 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~-~~-----~~g~~Gel~v~~~~-~~gY~~   59 (149)
                      ++..||+||++..              ..+++|+ |+++++++|+| +++. ++     +.|+.|||+++|+. +.|||+
T Consensus       313 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~  390 (540)
T PRK05857        313 TAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR-PYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWN  390 (540)
T ss_pred             eecccCCCcCCceeeecccccccccccccCCcCc-ccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhC
Confidence            3578999998531              2357888 99999999999 5554 33     45789999999999 999999


Q ss_pred             CchhhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEE
Q psy4966          60 KVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA  125 (149)
Q Consensus        60 ~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a  125 (149)
                      +++.+.+.| .+|||+|||++++|++|++++.              +|.|||++|..||+|.+++|+++++..+++.+++
T Consensus       391 ~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~  469 (540)
T PRK05857        391 NPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGL  469 (540)
T ss_pred             Cccchhhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEE
Confidence            999999888 5889999999999999999986              9999999999999999999999999888888888


Q ss_pred             EEEeCCC
Q psy4966         126 VVVPKPN  132 (149)
Q Consensus       126 ~v~~~~~  132 (149)
                      +++..+.
T Consensus       470 ~vv~~~~  476 (540)
T PRK05857        470 AVVASAE  476 (540)
T ss_pred             EEEeCCC
Confidence            8877643

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=7.2e-24  Score=170.19  Aligned_cols=143  Identities=29%  Similarity=0.385  Sum_probs=120.7

Q ss_pred             CeeeeccCCcccc-------cccCcCccccCCceEE-----------EEcCCCCccC-CCCCeeEEEEE-cCC-CccccC
Q psy4966           1 MFLVVGLVGKSKQ-------KATLTGKHFQEHNAIK-----------IIDPVTSVQL-PDGKTGELCLK-GDV-FLGYRN   59 (149)
Q Consensus         1 ~~~~~g~~e~~~~-------~~~~~g~~p~~~~~~~-----------i~d~~~g~~~-~~g~~Gel~v~-~~~-~~gY~~   59 (149)
                      ++..||+||++..       ...++|+ |++++++.           ++| ++|+.+ +++..|||+++ |+. +.||++
T Consensus       291 l~~~YG~tE~~~~~~~~~~~~~~~vG~-p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~  368 (540)
T PRK13388        291 VEDGYGSSEGAVIVVREPGTPPGSIGR-GAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYN  368 (540)
T ss_pred             eecccccccccceeecCCCCCCCCCCC-CCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccC
Confidence            3678999998642       2456787 99997653           344 445554 45678999998 998 999999


Q ss_pred             CchhhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEE
Q psy4966          60 KVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA  125 (149)
Q Consensus        60 ~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a  125 (149)
                      +++.+++.| .+|||+|||++++|++|+++++              +|.|||++|..|++|.+|+|++.+++..|+.+++
T Consensus       369 ~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~  447 (540)
T PRK13388        369 NPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMA  447 (540)
T ss_pred             ChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEE
Confidence            999999888 5789999999999999999986              8999999999999999999999999988999999


Q ss_pred             EEEeCCCCCCCHHHHHHHhhc
Q psy4966         126 VVVPKPNSSVTAEEVKQFVEF  146 (149)
Q Consensus       126 ~v~~~~~~~~~~~~l~~~l~~  146 (149)
                      ++++.++...+.++++++|++
T Consensus       448 ~v~~~~~~~~~~~~l~~~l~~  468 (540)
T PRK13388        448 ALVLRDGATFDPDAFAAFLAA  468 (540)
T ss_pred             EEEECCCCcCCHHHHHHHHHh
Confidence            999888777888889988865

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=3.3e-24  Score=176.97  Aligned_cols=125  Identities=30%  Similarity=0.452  Sum_probs=103.8

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCC--ccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTS--VQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g--~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++..         ..+++|+ |+|+++++|+| .++  ...+++..|||+|+|+. +.|||++|+.|++.|
T Consensus       455 l~~~YG~TEt~~~~~~~~~~~~~~~svG~-p~~g~evkI~d-~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f  532 (700)
T PTZ00216        455 VIQGWGLTETVCCGGIQRTGDLEPNAVGQ-LLKGVEMKLLD-TEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVL  532 (700)
T ss_pred             HhhccCcccccccccccCCCCCCCCCcCC-cCCCeEEEEee-chhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhc
Confidence            3578999998532         3467888 99999999999 443  23456778999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCccc--EEEEeeecCCCCCeEEEEEEeC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVED--VAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~--~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      ..+|||+|||+|++|+||+|+|+               +|+|||++|.+||.|.+  ++|+..++.   ..++|+++++
T Consensus       533 ~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~---~~l~a~vv~~  608 (700)
T PTZ00216        533 DEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR---SYICALVLTD  608 (700)
T ss_pred             cccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC---ceEEEEEecC
Confidence            88999999999999999999997               89999999999999997  344443332   4588888764

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.91  E-value=5.6e-24  Score=174.66  Aligned_cols=126  Identities=33%  Similarity=0.522  Sum_probs=107.0

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcC-CCC-ccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDP-VTS-VQLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~-~~g-~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++.          ...+++|+ |+|++++++.+. +.+ .+++.+..|||+++|+. +.|||++|+.|+..
T Consensus       411 i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~-p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~  489 (660)
T PLN02430        411 VVQGYGLTETLGPTTLGFPDEMCMLGTVGA-PAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEV  489 (660)
T ss_pred             eeeecchhhhhhceEeeccccCCCCCCccC-CCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhh
Confidence            367899999753          12478898 999999999873 333 45566678999999999 99999999999998


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      | .+|||+|||+|++|++|+++|.               +|.+||++|.+||.|.+++|++.   ..++.++|+|+++.
T Consensus       490 ~-~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~---~~~~~~~A~vv~~~  564 (660)
T PLN02430        490 M-KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGD---SFKSMLVAVVVPNE  564 (660)
T ss_pred             h-hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEec---CCcceEEEEEEcCH
Confidence            8 5899999999999999999997               89999999999999999999983   23567899998764

>PRK12316 peptide synthase; Provisional

Probab=99.91  E-value=4.8e-24  Score=200.95  Aligned_cols=144  Identities=25%  Similarity=0.296  Sum_probs=127.1

Q ss_pred             CeeeeccCCccccc--------------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQK--------------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~~--------------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++...              ..++|+ |+++++++|+| ++++++|.|.+|||+|+|+. +.|||++|+.|+
T Consensus      2290 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~ 2367 (5163)
T PRK12316       2290 LFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGR-ALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTA 2367 (5163)
T ss_pred             EEECccchhheeeeeeeecccccccCCCcCCccc-ccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChhhhh
Confidence            36789999986321              135788 99999999999 88999999999999999999 999999999999


Q ss_pred             cccCC-------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966          66 EMLDD-------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA  124 (149)
Q Consensus        66 ~~~~~-------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~  124 (149)
                      +.|..       ++||+|||+|++++||+|+|+              +|.|||++|.++|+|.+++|++.++. .++.++
T Consensus      2368 ~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~ 2446 (5163)
T PRK12316       2368 ERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLV 2446 (5163)
T ss_pred             hhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEE
Confidence            98842       359999999999999999997              99999999999999999999998766 678999


Q ss_pred             EEEEeCCCCCCCHHHHHHHhhcc
Q psy4966         125 AVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       125 a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                      |+|+..++...+.++|+++|++.
T Consensus      2447 a~v~~~~~~~~~~~~l~~~l~~~ 2469 (5163)
T PRK12316       2447 AYVVPDDAAEDLLAELRAWLAAR 2469 (5163)
T ss_pred             EEEEecCCCccCHHHHHHHHHhh
Confidence            99999887777888999988764

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.91  E-value=7e-24  Score=185.25  Aligned_cols=129  Identities=20%  Similarity=0.250  Sum_probs=112.4

Q ss_pred             CeeeeccCCcccc--------------------cccCcCccccCCceEEEEcCCC-CccCCCCCeeEEEEEcCC-Ccccc
Q psy4966           1 MFLVVGLVGKSKQ--------------------KATLTGKHFQEHNAIKIIDPVT-SVQLPDGKTGELCLKGDV-FLGYR   58 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------------~~~~~g~~p~~~~~~~i~d~~~-g~~~~~g~~Gel~v~~~~-~~gY~   58 (149)
                      ++..||+||++..                    ...++|+ |+++++++|+|+++ ++++|.|..|||+|+|+. +.||+
T Consensus       558 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~  636 (1389)
T TIGR03443       558 IVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGK-GMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYL  636 (1389)
T ss_pred             EEECccCCccceeEEEEEccccccccchhhcccCcCcCCC-ccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcC
Confidence            3678999998531                    1235687 99999999999533 478999999999999999 99999


Q ss_pred             CCchhhhcccC----------------------------CCCeEEcCceEEEcCCCeEEEE--------------ChHHH
Q psy4966          59 NKVEATKEMLD----------------------------DDGWLHTGDLAYRLPDGTHFII--------------SPCEL   96 (149)
Q Consensus        59 ~~~~~~~~~~~----------------------------~~~~~~TGD~~~~~~~G~~~i~--------------~~~eI   96 (149)
                      ++|+.|++.|.                            .++||+|||+|++++||+++|+              +|.||
T Consensus       637 ~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eI  716 (1389)
T TIGR03443       637 GLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEI  716 (1389)
T ss_pred             CChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHH
Confidence            99999998873                            2579999999999999999997              99999


Q ss_pred             HHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          97 ESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        97 E~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      |++|.+||.|.+++|++.++...++.+++++++.
T Consensus       717 E~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~  750 (1389)
T TIGR03443       717 DTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQ  750 (1389)
T ss_pred             HHHHHhCcchheeEEEEeeCCCCCeEEEEEEecc
Confidence            9999999999999999998888788899999876

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12467 peptide synthase; Provisional

Probab=99.91  E-value=3e-24  Score=199.77  Aligned_cols=145  Identities=24%  Similarity=0.249  Sum_probs=125.9

Q ss_pred             CeeeeccCCccccc--------------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQK--------------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~~--------------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      +++.||+||++...              ..++|+ |+++++++|+| ++++++|+|++|||+|+|+. +.||+++|+.|+
T Consensus      3380 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~ 3457 (3956)
T PRK12467       3380 LTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGR-PVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTA 3457 (3956)
T ss_pred             EEeCcccchhEeeeEEEecccccccCCCCCCCcc-ccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccch
Confidence            36789999986311              146788 99999999999 88999999999999999999 999999999999


Q ss_pred             cccCCC-------CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966          66 EMLDDD-------GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA  124 (149)
Q Consensus        66 ~~~~~~-------~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~  124 (149)
                      +.|..+       +||+|||+|++++||+|+|+              +|.|||++|.++|+|.+++|++.. ...+++++
T Consensus      3458 ~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~-~~~~~~lv 3536 (3956)
T PRK12467       3458 ERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARD-GAGGKQLV 3536 (3956)
T ss_pred             hhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEec-CCCCcEEE
Confidence            999654       36999999999999999997              999999999999999999999874 44578999


Q ss_pred             EEEEeCCCCCCCHHHHHHHhhccc
Q psy4966         125 AVVVPKPNSSVTAEEVKQFVEFPR  148 (149)
Q Consensus       125 a~v~~~~~~~~~~~~l~~~l~~~~  148 (149)
                      ++++.........++++++|++..
T Consensus      3537 a~v~~~~~~~~~~~~l~~~l~~~L 3560 (3956)
T PRK12467       3537 AYVVPADPQGDWRETLRDHLAASL 3560 (3956)
T ss_pred             EEEeCCCCCcccHHHHHHHHhccC
Confidence            999987665667788988887653

>PRK12316 peptide synthase; Provisional

Probab=99.91  E-value=5e-24  Score=200.82  Aligned_cols=141  Identities=25%  Similarity=0.291  Sum_probs=124.4

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++.           ....++|+ |+++++++|+| ++++++|.|..|||+|+|+. +.||+++|+.|++.|
T Consensus       799 l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f  876 (5163)
T PRK12316        799 LYNLYGPTEAAIDVTHWTCVEEGGDSVPIGR-PIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERF  876 (5163)
T ss_pred             EEeCcCcChheeeeeEEecccccCCCCCCcc-ccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChhhhhhhC
Confidence            367899999872           12346788 99999999999 88999999999999999999 999999999999988


Q ss_pred             C------CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEE
Q psy4966          69 D------DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV  128 (149)
Q Consensus        69 ~------~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~  128 (149)
                      .      +++||+|||++++++||+++|+              +|.|||++|.+||+|.+|+|++.+    |+.++|+|+
T Consensus       877 ~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv  952 (5163)
T PRK12316        877 VPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVV  952 (5163)
T ss_pred             CCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEE
Confidence            4      2459999999999999999997              999999999999999999999885    678999999


Q ss_pred             eCCCCCCCHHHHHHHhhcc
Q psy4966         129 PKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       129 ~~~~~~~~~~~l~~~l~~~  147 (149)
                      +.++.....+.++++|++.
T Consensus       953 ~~~~~~~~~~~l~~~l~~~  971 (5163)
T PRK12316        953 LESEGGDWREALKAHLAAS  971 (5163)
T ss_pred             ccCCCCCCHHHHHHHHHhh
Confidence            8876667788899988764

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=1.6e-23  Score=167.97  Aligned_cols=144  Identities=30%  Similarity=0.546  Sum_probs=125.7

Q ss_pred             CeeeeccCCcccc-----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ-----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~-----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+..           ...++|+ |+|++.++++| +++++++.|+.|||+++|+. +.||+++++.++..|
T Consensus       319 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f  396 (542)
T PRK07786        319 ILAAFGQTEMSPVTCMLLGEDAIRKLGSVGK-VIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF  396 (542)
T ss_pred             EEeeecccccccceEecCcccccccCCCccc-cCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh
Confidence            3578999998632           2356788 99999999999 88899999999999999999 999999999999888


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC-
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS-  133 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~-  133 (149)
                       .++||+|||+++++++|+++++              ++.|||++|.+++.|.+++|++.++...++.+++++++..+. 
T Consensus       397 -~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  475 (542)
T PRK07786        397 -AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA  475 (542)
T ss_pred             -hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCC
Confidence             5899999999999999999886              899999999999999999999998888888899998877543 


Q ss_pred             CCCHHHHHHHhhcc
Q psy4966         134 SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~~~l~~~l~~~  147 (149)
                      ....+++.++|+++
T Consensus       476 ~~~~~~l~~~l~~~  489 (542)
T PRK07786        476 ALTLEDLAEFLTDR  489 (542)
T ss_pred             CCCHHHHHHHHHhh
Confidence            35677888887764

>KOG1175|consensus

Probab=99.91  E-value=1.6e-23  Score=168.07  Aligned_cols=141  Identities=29%  Similarity=0.354  Sum_probs=120.8

Q ss_pred             eeeccCCcc-----------cccccCcCccccCCceEEEEcCCCCccCCCC-CeeEEEEEcC---C-CccccCCchhhhc
Q psy4966           3 LVVGLVGKS-----------KQKATLTGKHFQEHNAIKIIDPVTSVQLPDG-KTGELCLKGD---V-FLGYRNKVEATKE   66 (149)
Q Consensus         3 ~~~g~~e~~-----------~~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g-~~Gel~v~~~---~-~~gY~~~~~~~~~   66 (149)
                      ..||+||++           +.++++.+. |++++.+.|+| ++|++++.+ ..|+|+++.+   . +++||+|++....
T Consensus       390 e~~~qtEtG~~~i~~~~g~~p~~pg~~~~-p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~  467 (626)
T KOG1175|consen  390 ETYGQTETGGICITPKPGKLPIKPGSAGK-PFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRA  467 (626)
T ss_pred             hceeeeccCceeeeccCCCCCcCccccCC-CCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhh
Confidence            456777775           356777888 99999999999 799999876 8899999984   4 8999999995555


Q ss_pred             ccCC--CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          67 MLDD--DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        67 ~~~~--~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      .+..  .|+|.|||.+++|+||+++|+              ++.|||++|.+||.|.|++|++.+++..||.+.|||+++
T Consensus       468 ~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~  547 (626)
T KOG1175|consen  468 AYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLK  547 (626)
T ss_pred             hhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEc
Confidence            5545  799999999999999999998              999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHhhc
Q psy4966         131 PNSSVTAEEVKQFVEF  146 (149)
Q Consensus       131 ~~~~~~~~~l~~~l~~  146 (149)
                      ++ ..+.++|.+.|++
T Consensus       548 ~g-~~~~~~L~kel~~  562 (626)
T KOG1175|consen  548 SG-SHDPEQLTKELVK  562 (626)
T ss_pred             CC-CCChHHHHHHHHH
Confidence            98 5555666655544

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=2.2e-23  Score=165.47  Aligned_cols=143  Identities=27%  Similarity=0.447  Sum_probs=122.8

Q ss_pred             eeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           2 FLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         2 ~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      +..||+||.+.          ....++|+ |+ ++.++++| +++++++.|+.|||+++|+. +.||++++..+...+..
T Consensus       291 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~-~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  367 (502)
T PRK08276        291 HEYYASSEGGGVTVITSEDWLAHPGSVGK-AV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNP  367 (502)
T ss_pred             hhhcccccccceeEecCccccccCCCcce-ec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcC
Confidence            46799999865          22346787 88 88999999 77899999999999999999 99999999999999877


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      ++||+|||+++++++|++++.              ++.+||++|+++++|.++++++..++..|+.+++++++.++...+
T Consensus       368 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  447 (502)
T PRK08276        368 HGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAG  447 (502)
T ss_pred             CCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCC
Confidence            799999999999999999886              899999999999999999999999998899999999987654434


Q ss_pred             H---HHHHHHhhcc
Q psy4966         137 A---EEVKQFVEFP  147 (149)
Q Consensus       137 ~---~~l~~~l~~~  147 (149)
                      .   +.+.+.+++.
T Consensus       448 ~~~~~~i~~~~~~~  461 (502)
T PRK08276        448 DALAAELIAWLRGR  461 (502)
T ss_pred             hhhHHHHHHHHHhh
Confidence            3   3566666543

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.91  E-value=2.4e-23  Score=164.34  Aligned_cols=141  Identities=33%  Similarity=0.601  Sum_probs=122.9

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+.           ....++|+ |++++++++.+ ++ ++++.|+.|||+++|+. +.||+++++.++..|
T Consensus       281 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~-p~~~~~~~i~~-~~-~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~  357 (483)
T PRK03640        281 VYQSYGMTETASQIVTLSPEDALTKLGSAGK-PLFPCELKIEK-DG-VVVPPFEEGEIVVKGPNVTKGYLNREDATRETF  357 (483)
T ss_pred             eeeeeccCcccccccccCcccccccCCCccc-ccCCcEEEEec-CC-CcCCCCCceEEEEECcchhhhhcCCHHHHHHHH
Confidence            467899999753           23467888 99999999998 54 78999999999999999 999999999998888


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .++||+|||+++++++|++++.              ++.+||+++.++++|.++++++.+++..+..++++++...  .
T Consensus       358 -~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~--~  434 (483)
T PRK03640        358 -QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSG--E  434 (483)
T ss_pred             -hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCC--C
Confidence             5899999999999999999886              8999999999999999999999998888888888887543  5


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++++++|++.
T Consensus       435 ~~~~~l~~~~~~~  447 (483)
T PRK03640        435 VTEEELRHFCEEK  447 (483)
T ss_pred             CCHHHHHHHHHHh
Confidence            6778888888764

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.91  E-value=3.5e-23  Score=165.12  Aligned_cols=141  Identities=28%  Similarity=0.421  Sum_probs=122.5

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||++..          ...++|+ |+|+++++|+| ++++++++|+.|||+++|+. +.||++++..   .+ 
T Consensus       320 v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-  393 (516)
T PRK13383        320 LYNGYGSTEVGIGALATPADLRDAPETVGK-PVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-  393 (516)
T ss_pred             hhhcccccccccceeccccccccCCCcccC-CCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchh---he-
Confidence            3578999998531          2346888 99999999999 78899999999999999999 9999987642   22 


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .+|||+|||++++|++|++++.              +|.+||++|.+++.|.+++++++++...|+.+.++|++.++...
T Consensus       394 ~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~  473 (516)
T PRK13383        394 VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGV  473 (516)
T ss_pred             ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC
Confidence            4799999999999999999986              89999999999999999999999999889999999998877667


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.+++++++++.
T Consensus       474 ~~~~l~~~~~~~  485 (516)
T PRK13383        474 DAAQLRDYLKDR  485 (516)
T ss_pred             CHHHHHHHHHHh
Confidence            778888888764

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.91  E-value=2.7e-23  Score=180.35  Aligned_cols=145  Identities=19%  Similarity=0.245  Sum_probs=121.9

Q ss_pred             CeeeeccCCcccc----------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchh
Q psy4966           1 MFLVVGLVGKSKQ----------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEA   63 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~   63 (149)
                      ++..||+||++..                ...++|+ |++++.++|+| ++++++|.|..|||+|+|+. +.||+++++.
T Consensus       745 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~  822 (1296)
T PRK10252        745 LHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGY-PVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDL  822 (1296)
T ss_pred             EEeCCCcchhhheeeeeecccccccccCCCCCCccc-ccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCccc
Confidence            3678999997531                1235787 99999999999 89999999999999999999 9999999999


Q ss_pred             hhcccCC------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeee----cCCC
Q psy4966          64 TKEMLDD------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIP----HDVF  119 (149)
Q Consensus        64 ~~~~~~~------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~----~~~~  119 (149)
                      |++.|..      ++||+|||+|+++++|+++|+              +|.|||++|.++|+|.+++|+++.    +...
T Consensus       823 t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~  902 (1296)
T PRK10252        823 TASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATG  902 (1296)
T ss_pred             chhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCC
Confidence            9998853      349999999999999999997              999999999999999999887653    1112


Q ss_pred             C--CeEEEEEEeCCCCCCCHHHHHHHhhcc
Q psy4966         120 G--ELPAAVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       120 g--~~~~a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                      |  ..++++++...+...+.++|++++++.
T Consensus       903 ~~~~~lva~v~~~~~~~~~~~~l~~~l~~~  932 (1296)
T PRK10252        903 GDARQLVGYLVSQSGLPLDTSALQAQLRER  932 (1296)
T ss_pred             CCccEEEEEEEcCCCCCCCHHHHHHHHHhh
Confidence            3  479999998776667788899888764

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.90  E-value=1.1e-22  Score=161.92  Aligned_cols=144  Identities=28%  Similarity=0.493  Sum_probs=125.1

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-C-ccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-F-LGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~-~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+..          ...++|. |++++.++++| +++++++.|+.|||+++++. + .+|++++..+...+
T Consensus       299 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~  376 (509)
T PRK12406        299 IYEYYGSTESGAVTFATSEDALSHPGTVGK-AAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID  376 (509)
T ss_pred             EEeeccccccCceEecCcccccccCCCcCc-cCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc
Confidence            3578999998642          2356787 99999999999 78899999999999999998 5 49999998887766


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .++||+|||+++++++|++++.              ++.+||+.|+++++|.++++++.++...++.+++++++.++..
T Consensus       377 -~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  455 (509)
T PRK12406        377 -RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGAT  455 (509)
T ss_pred             -CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCC
Confidence             6899999999999999999986              8999999999999999999999999888899999999877666


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++|.+.+++.
T Consensus       456 ~~~~~l~~~l~~~  468 (509)
T PRK12406        456 LDEADIRAQLKAR  468 (509)
T ss_pred             CCHHHHHHHHHHh
Confidence            6778888887764

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.90  E-value=5.1e-23  Score=166.58  Aligned_cols=120  Identities=30%  Similarity=0.553  Sum_probs=102.2

Q ss_pred             eEEEEcCCCCccCCC--CCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE------------
Q psy4966          27 AIKIIDPVTSVQLPD--GKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII------------   91 (149)
Q Consensus        27 ~~~i~d~~~g~~~~~--g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~------------   91 (149)
                      .+.+.+++.+++++.  +..|||+++|+. +.|||++++.+...| .++||+|||+|++|++|+++|+            
T Consensus       373 ~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~  451 (579)
T PLN03102        373 DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGE  451 (579)
T ss_pred             ceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCE
Confidence            456677556677764  367999999999 999999999999988 5789999999999999999986            


Q ss_pred             --ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC----------CHHHHHHHhhcc
Q psy4966          92 --SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV----------TAEEVKQFVEFP  147 (149)
Q Consensus        92 --~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~----------~~~~l~~~l~~~  147 (149)
                        +|.|||++|.+||.|.+++|++++++.+|+.++++|++.++...          +..+++++|++.
T Consensus       452 ~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  519 (579)
T PLN03102        452 NISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCREN  519 (579)
T ss_pred             EECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhh
Confidence              89999999999999999999999999999999999998765432          345677777654

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.90  E-value=6.9e-23  Score=164.84  Aligned_cols=143  Identities=36%  Similarity=0.526  Sum_probs=123.2

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+..          ...++|. |+|++.+++++ +++++++.|+.|||+++|+. +.||+++++.+...| 
T Consensus       353 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-  429 (560)
T PRK08974        353 LLEGYGLTECSPLVSVNPYDLDYYSGSIGL-PVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-  429 (560)
T ss_pred             EEeeecccccCceeeccCCCCcccCCcccc-CcCCCEEEEEC-CCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-
Confidence            3678999997632          2356787 99999999999 78899999999999999999 999999999998888 


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||+++++++|+++++              +|.+||++|.++++|.+++|++.++...|+.++++++..+ ...
T Consensus       430 ~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~  508 (560)
T PRK08974        430 KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSL  508 (560)
T ss_pred             hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCC
Confidence            6899999999999999999986              8999999999999999999999999988888888776543 345


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.+++++++++.
T Consensus       509 ~~~~l~~~l~~~  520 (560)
T PRK08974        509 TEEELITHCRRH  520 (560)
T ss_pred             CHHHHHHHHHhh
Confidence            667787777654

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.90  E-value=6.1e-23  Score=161.97  Aligned_cols=129  Identities=29%  Similarity=0.474  Sum_probs=110.2

Q ss_pred             eeeeccCCcccc-----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           2 FLVVGLVGKSKQ-----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         2 ~~~~g~~e~~~~-----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      +..||+||++..           ...++|+ |+|+++++++         .|+.|||+++|+. +.||++++.      .
T Consensus       258 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~------~  321 (452)
T PRK07445        258 APTYGMTETASQIATLKPDDFLAGNNSSGQ-VLPHAQITIP---------ANQTGNITIQAQSLALGYYPQIL------D  321 (452)
T ss_pred             ecCcchhhhcccccccCchhhccCCCcCCc-cCCCCeEEEc---------CCCcceEEEeCCccchhhcCCcc------C
Confidence            568999998632           2245777 9999999987         3678999999999 999997642      2


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||++++|+||+++|.              +|.|||++|.+||+|.+|+|++.+++.+|+.++++++..++ ..
T Consensus       322 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~  400 (452)
T PRK07445        322 SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SI  400 (452)
T ss_pred             CCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CC
Confidence            4789999999999999999997              99999999999999999999999999999999999998755 46


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.++++++|++.
T Consensus       401 ~~~~l~~~~~~~  412 (452)
T PRK07445        401 SLEELKTAIKDQ  412 (452)
T ss_pred             CHHHHHHHHHHh
Confidence            678888888764

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.90  E-value=8.5e-23  Score=163.73  Aligned_cols=145  Identities=28%  Similarity=0.451  Sum_probs=123.7

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcC-CCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDP-VTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~-~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+.          ....++|. |++++.+++.+. +++++++.|+.|||+++|+. +.||+++++.+++.|
T Consensus       340 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  418 (541)
T TIGR03205       340 LKSGWGMTETCSPGTGHPPEGPDKPGSIGL-MLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF  418 (541)
T ss_pred             eecccccccCCcccccCCCCCCCCCCCcce-eccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhh
Confidence            357899999853          12346787 999999887631 66789999999999999999 999999999998888


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC-
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS-  133 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~-  133 (149)
                       .++||+|||+++++++|+++|+              +|.+||++|.++++|.+++|++++++..++.+++++++..+. 
T Consensus       419 -~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  497 (541)
T TIGR03205       419 -VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK  497 (541)
T ss_pred             -ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCC
Confidence             4789999999999999999986              899999999999999999999999988889999999987653 


Q ss_pred             CCCHHHHHHHhhcc
Q psy4966         134 SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~~~l~~~l~~~  147 (149)
                      ..+.+++.+++++.
T Consensus       498 ~~~~~~l~~~~~~~  511 (541)
T TIGR03205       498 PFSLDELRAFLAGK  511 (541)
T ss_pred             cCCHHHHHHHHHhh
Confidence            35677888887764

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.90  E-value=4.7e-23  Score=166.61  Aligned_cols=127  Identities=28%  Similarity=0.493  Sum_probs=110.2

Q ss_pred             cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE---
Q psy4966          16 TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII---   91 (149)
Q Consensus        16 ~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~---   91 (149)
                      .++|. |+|++.++++| ++++.++.|+.|||+++|+. +.|||++ ..+...+..++||+|||++++ ++|+++|+   
T Consensus       385 ~~vG~-~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~  460 (579)
T PRK09192        385 VNCGK-ALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRA  460 (579)
T ss_pred             eecCC-cCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEecc
Confidence            35787 99999999999 78899999999999999999 9999999 667777777899999999999 89999997   


Q ss_pred             -----------ChHHHHHHHhcCCCcc--cEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhcc
Q psy4966          92 -----------SPCELESIFRQHPDVE--DVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus        92 -----------~~~eIE~~l~~~~~V~--~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                                 +|.|||++|++||+|.  ++++++++++. ++.++++++..++...+.++|.+++++.
T Consensus       461 dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~  528 (579)
T PRK09192        461 KDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAAL  528 (579)
T ss_pred             ccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHH
Confidence                       8999999999999998  89999998886 5578888887765555667777777653

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.90  E-value=1.2e-22  Score=161.80  Aligned_cols=143  Identities=27%  Similarity=0.414  Sum_probs=122.0

Q ss_pred             eeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCC
Q psy4966           2 FLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDD   71 (149)
Q Consensus         2 ~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~   71 (149)
                      +..||+||+..          ....++|+ |+++ .++++| +++.+++.|+.|||+++|+.+.||+++++.+...+..+
T Consensus       304 ~~~YG~tE~~~~~~~~~~~~~~~~~~vG~-~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~~  380 (511)
T PRK13391        304 HEYYAATEGLGFTACDSEEWLAHPGTVGR-AMFG-DLHILD-DDGAELPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPD  380 (511)
T ss_pred             eeeeccccccceEEecCccccccCCCcCC-cccc-eEEEEC-CCCCCCCCCCceEEEEecCcceEEcCChhHhHHhhccC
Confidence            56899999864          23456788 9999 689999 88999999999999999999779999999998887554


Q ss_pred             -CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC-
Q psy4966          72 -GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV-  135 (149)
Q Consensus        72 -~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~-  135 (149)
                       +||+|||+++++++|++++.              ++.+||++|.+|+.|.+++|++.++...|+.++++++..++... 
T Consensus       381 ~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~  460 (511)
T PRK13391        381 GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPG  460 (511)
T ss_pred             CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcc
Confidence             89999999999999999996              89999999999999999999999999999999999987654322 


Q ss_pred             --CHHHHHHHhhcc
Q psy4966         136 --TAEEVKQFVEFP  147 (149)
Q Consensus       136 --~~~~l~~~l~~~  147 (149)
                        ..++++++|++.
T Consensus       461 ~~~~~~l~~~~~~~  474 (511)
T PRK13391        461 PALAAELIAFCRQR  474 (511)
T ss_pred             cchHHHHHHHHHhh
Confidence              246777777754

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.90  E-value=1.1e-22  Score=164.31  Aligned_cols=145  Identities=28%  Similarity=0.434  Sum_probs=120.1

Q ss_pred             CeeeeccCCccccc-----------------ccCcCccccCCceEEEEcCCCCccCC--CCCeeEEEEEcCC-CccccCC
Q psy4966           1 MFLVVGLVGKSKQK-----------------ATLTGKHFQEHNAIKIIDPVTSVQLP--DGKTGELCLKGDV-FLGYRNK   60 (149)
Q Consensus         1 ~~~~~g~~e~~~~~-----------------~~~~g~~p~~~~~~~i~d~~~g~~~~--~g~~Gel~v~~~~-~~gY~~~   60 (149)
                      ++..||+||++...                 ..++|+ +.+++++++++ + +..++  ++..|||+++|+. +.|||++
T Consensus       326 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~  402 (576)
T PRK05620        326 VVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGR-FPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHS  402 (576)
T ss_pred             eeeeccccccccceeeeccCCccccccccccccccCC-cCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCC
Confidence            46789999986421                 125677 88999999999 5 66554  5788999999999 9999999


Q ss_pred             chhh----------------hcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEE
Q psy4966          61 VEAT----------------KEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVA  110 (149)
Q Consensus        61 ~~~~----------------~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~  110 (149)
                      ++.+                ...+..++||+|||+++++++|+++|.              ++.+||++|.+||.|.+++
T Consensus       403 ~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~  482 (576)
T PRK05620        403 PTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECA  482 (576)
T ss_pred             ccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEE
Confidence            9877                223445789999999999999999997              8999999999999999999


Q ss_pred             EEeeecCCCCCeEEEEEEeCCCCC---CCHHHHHHHhhccc
Q psy4966         111 VIGIPHDVFGELPAAVVVPKPNSS---VTAEEVKQFVEFPR  148 (149)
Q Consensus       111 v~~~~~~~~g~~~~a~v~~~~~~~---~~~~~l~~~l~~~~  148 (149)
                      |++.++...|+.+++++++.++..   .+.++|+++|++..
T Consensus       483 vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L  523 (576)
T PRK05620        483 VIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRL  523 (576)
T ss_pred             EEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhC
Confidence            999999999999999998876543   34678888887643

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.90  E-value=6.5e-23  Score=164.49  Aligned_cols=141  Identities=30%  Similarity=0.385  Sum_probs=119.7

Q ss_pred             CeeeeccCCccccc--------------------ccCcCccccCCceEEEEcCCCCccCCCC--CeeEEEEEcCC-Cccc
Q psy4966           1 MFLVVGLVGKSKQK--------------------ATLTGKHFQEHNAIKIIDPVTSVQLPDG--KTGELCLKGDV-FLGY   57 (149)
Q Consensus         1 ~~~~~g~~e~~~~~--------------------~~~~g~~p~~~~~~~i~d~~~g~~~~~g--~~Gel~v~~~~-~~gY   57 (149)
                      ++..||+||++...                    ..++|+ |+|++.++++| +++++++.+  +.|||+++|+. +.||
T Consensus       321 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy  398 (539)
T PRK07008        321 VIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGR-VIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRY  398 (539)
T ss_pred             eecccccccccccceecccccccccCCchhhhhhcccCCc-cccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhh
Confidence            46789999986311                    235777 99999999999 778888754  57999999999 9999


Q ss_pred             cCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeE
Q psy4966          58 RNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELP  123 (149)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~  123 (149)
                      ++++.   ..+ .++||+|||+++++++|++++.              +|.|||++|..+|.|.+++++++++..+++.+
T Consensus       399 ~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~  474 (539)
T PRK07008        399 FRGDA---SPL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERP  474 (539)
T ss_pred             cCChh---hhh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccce
Confidence            99983   234 3689999999999999999986              89999999999999999999999998888999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHhhcc
Q psy4966         124 AAVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       124 ~a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                      +++|+..++...+.+++.++|+++
T Consensus       475 ~~~v~~~~~~~~~~~~l~~~~~~~  498 (539)
T PRK07008        475 LLVVVKRPGAEVTREELLAFYEGK  498 (539)
T ss_pred             EEEEEeCCCCccCHHHHHHHHHhh
Confidence            999888776667888888888764

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.90  E-value=1.3e-22  Score=160.92  Aligned_cols=143  Identities=22%  Similarity=0.230  Sum_probs=115.2

Q ss_pred             CeeeeccCCccc--------------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSK--------------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~--------------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++.              ....++|. |+|+++++|++ +++.++++|+.|||+++|+. +.||+++++.+.
T Consensus       287 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~-~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~  364 (502)
T TIGR01734       287 IYNTYGPTEATVAVTSVKITQEILDQYPRLPIGF-AKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTA  364 (502)
T ss_pred             EEeCccCCcceEEEEEEEccccccccCCcccccc-ccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccch
Confidence            367899999753              11235777 99999999999 78999999999999999999 999999999888


Q ss_pred             cccC---CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeee-cCCCCCeEEEEE
Q psy4966          66 EMLD---DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIP-HDVFGELPAAVV  127 (149)
Q Consensus        66 ~~~~---~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~-~~~~g~~~~a~v  127 (149)
                      ..|.   .++||+|||+|++|++ +++++              +|.+||++|.++|.|++++++++. ....++.+++++
T Consensus       365 ~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v  443 (502)
T TIGR01734       365 EAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAI  443 (502)
T ss_pred             HhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEE
Confidence            7662   3469999999999976 88886              999999999999999999999976 444567888988


Q ss_pred             EeCCCCCCCH----HHHHHHhhc
Q psy4966         128 VPKPNSSVTA----EEVKQFVEF  146 (149)
Q Consensus       128 ~~~~~~~~~~----~~l~~~l~~  146 (149)
                      +.......+.    .++++.+++
T Consensus       444 ~~~~~~~~~~~~~~~~i~~~~~~  466 (502)
T TIGR01734       444 VPETEDFEKEFQLTKAIKKELKK  466 (502)
T ss_pred             EecccccccchhhHHHHHHHHhh
Confidence            8765432222    455665554

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.90  E-value=1.4e-22  Score=161.19  Aligned_cols=144  Identities=25%  Similarity=0.352  Sum_probs=123.2

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||.+..         ...++|. |++++.++++| +++.++++|+.|||+++|+. +.||+++++.+...| .
T Consensus       306 v~~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~  382 (508)
T TIGR02262       306 IVDGIGSTEMLHIFLSNLPGDVRYGTSGK-PVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-Q  382 (508)
T ss_pred             hhhCccccccCceeecCCccCCCCCCcCC-CCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-h
Confidence            3568999998632         2346777 99999999999 88999999999999999999 999999999998888 5


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC--
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS--  134 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~--  134 (149)
                      ++||+|||+++++++|++++.              +|.+||+.|.++++|.++++++.++...++++.+++++.+...  
T Consensus       383 ~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  462 (508)
T TIGR02262       383 GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDID  462 (508)
T ss_pred             cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccc
Confidence            789999999999999999886              8999999999999999999999888887888899998876532  


Q ss_pred             -CCHHHHHHHhhcc
Q psy4966         135 -VTAEEVKQFVEFP  147 (149)
Q Consensus       135 -~~~~~l~~~l~~~  147 (149)
                       ...+++.+.++++
T Consensus       463 ~~~~~~i~~~~~~~  476 (508)
T TIGR02262       463 TALETELKEHVKDR  476 (508)
T ss_pred             cccHHHHHHHHHHh
Confidence             3356777777654

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.89  E-value=2.7e-22  Score=159.21  Aligned_cols=144  Identities=39%  Similarity=0.647  Sum_probs=126.8

Q ss_pred             CeeeeccCCcccc---------------cccCcCccccCCceEEEEcCCCCccCCC--CCeeEEEEEcCC-CccccCCch
Q psy4966           1 MFLVVGLVGKSKQ---------------KATLTGKHFQEHNAIKIIDPVTSVQLPD--GKTGELCLKGDV-FLGYRNKVE   62 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~--g~~Gel~v~~~~-~~gY~~~~~   62 (149)
                      ++..||+||.+..               ...++|. |+|++.++|+| +++++++.  |+.|||+++|+. +.||+.+++
T Consensus       309 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~  386 (521)
T PRK06187        309 LVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGR-PLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPE  386 (521)
T ss_pred             hheeeccCccCcccccCCcccccccccccCCcccc-ccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHH
Confidence            3568999998631               3446787 99999999999 77888988  999999999999 999999999


Q ss_pred             hhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEE
Q psy4966          63 ATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV  128 (149)
Q Consensus        63 ~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~  128 (149)
                      .+...| .++||+|||+++++++|++++.              +|.+||+.|.++++|.+++|++.+++..++.++++++
T Consensus       387 ~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  465 (521)
T PRK06187        387 ATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVV  465 (521)
T ss_pred             HHHHHh-hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEE
Confidence            998888 4779999999999999999886              8999999999999999999999998888899999999


Q ss_pred             eCCCCCCCHHHHHHHhhcc
Q psy4966         129 PKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       129 ~~~~~~~~~~~l~~~l~~~  147 (149)
                      +.++...+.+++++++++.
T Consensus       466 ~~~~~~~~~~~l~~~l~~~  484 (521)
T PRK06187        466 LKPGATLDAKELRAFLRGR  484 (521)
T ss_pred             ECCCCCCCHHHHHHHHHHh
Confidence            8887777888888888664

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.89  E-value=3.9e-23  Score=168.26  Aligned_cols=118  Identities=24%  Similarity=0.341  Sum_probs=100.5

Q ss_pred             eeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCC
Q psy4966           2 FLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD   71 (149)
Q Consensus         2 ~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~   71 (149)
                      +..||+||++..         ..+++|+ |+|+++++++| +       +..|||+++|+. |.|||++|+.+.+.|..+
T Consensus       369 ~~~YG~TE~~~~~~~~~~~~~~~~svG~-p~pg~~v~i~d-~-------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~d  439 (614)
T PRK08180        369 MTGLGMTETAPSATFTTGPLSRAGNIGL-PAPGCEVKLVP-V-------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEE  439 (614)
T ss_pred             eeeecccccCCceEecccccCCCCcccC-ccCCcEEEEec-C-------CCCcEEEEecCccchhhcCChhHhHhhcccC
Confidence            568999998632         3457888 99999999998 4       345999999999 999999999999999778


Q ss_pred             CeEEcCceEEE----cCCCeEEEE-----------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          72 GWLHTGDLAYR----LPDGTHFII-----------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        72 ~~~~TGD~~~~----~~~G~~~i~-----------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      |||+|||+|++    |++|+++|+                 ++.|||.++.+||.|.+++|++.+++.    +.|+|+++
T Consensus       440 gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~----~~a~V~~~  515 (614)
T PRK08180        440 GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDE----IGLLVFPN  515 (614)
T ss_pred             CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCc----eEEEEEcC
Confidence            99999999999    468888886                 378999999999999999999988753    67888876


Q ss_pred             CC
Q psy4966         131 PN  132 (149)
Q Consensus       131 ~~  132 (149)
                      ++
T Consensus       516 ~~  517 (614)
T PRK08180        516 LD  517 (614)
T ss_pred             HH
Confidence            54

>PLN02479 acetate-CoA ligase

Probab=99.89  E-value=1.4e-22  Score=163.50  Aligned_cols=128  Identities=30%  Similarity=0.562  Sum_probs=108.1

Q ss_pred             cCccccCCce-EEEEcCCCCccCCCC--CeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE--
Q psy4966          18 TGKHFQEHNA-IKIIDPVTSVQLPDG--KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--   91 (149)
Q Consensus        18 ~g~~p~~~~~-~~i~d~~~g~~~~~g--~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--   91 (149)
                      .|. +.++.. ++++|++++++++.+  +.|||+++|+. +.|||++++.+.+.| .++||+|||+++++++|+++|+  
T Consensus       374 ~g~-~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR  451 (567)
T PLN02479        374 QGV-RYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDR  451 (567)
T ss_pred             cCC-CcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEecc
Confidence            455 667765 789986678888764  67999999999 999999999999988 5899999999999999999996  


Q ss_pred             ------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC-----CCHHHHHHHhhcc
Q psy4966          92 ------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS-----VTAEEVKQFVEFP  147 (149)
Q Consensus        92 ------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~-----~~~~~l~~~l~~~  147 (149)
                                  +|.|||++|..||.|.+++|++.++..+++.+++++++.++..     ...++|.++++++
T Consensus       452 ~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~  524 (567)
T PLN02479        452 SKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRER  524 (567)
T ss_pred             ccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhh
Confidence                        8999999999999999999999998888899999999876532     2245667666553

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.89  E-value=2.3e-22  Score=166.36  Aligned_cols=138  Identities=20%  Similarity=0.214  Sum_probs=111.9

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccC--Cchh-----
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRN--KVEA-----   63 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~--~~~~-----   63 (149)
                      ++..||+||++.         ....++|+ |+|+++++++| .++.    +..|||+++|+. +.|||+  +++.     
T Consensus       507 l~~~YG~TE~~~~~~~~~~~~~~~~svG~-p~pg~~~~i~d-~~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~  580 (718)
T PRK08043        507 ILEGYGVTECAPVVSINVPMAAKPGTVGR-ILPGMDARLLS-VPGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPT  580 (718)
T ss_pred             eecccCcccccceEEecCCcccCCCCCCC-cCCCCeeEEec-CCCC----CCceEEEEecCCccccccCCCCcccccccc
Confidence            367899999853         23568898 99999999999 5543    466999999999 999998  4442     


Q ss_pred             --hhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEE
Q psy4966          64 --TKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV  127 (149)
Q Consensus        64 --~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v  127 (149)
                        +...+..+|||+|||+|++|+||+++|+              +|.|||++|.+++.+.+++|++.++..+|+.+++++
T Consensus       581 ~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~  660 (718)
T PRK08043        581 AENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFT  660 (718)
T ss_pred             cccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEE
Confidence              2222335799999999999999999997              999999999999999888899999998999888776


Q ss_pred             EeCCCCCCCHHHHHHHhhcc
Q psy4966         128 VPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       128 ~~~~~~~~~~~~l~~~l~~~  147 (149)
                      .   +...+.++++++|++.
T Consensus       661 ~---~~~~~~~~l~~~~~~~  677 (718)
T PRK08043        661 T---DSELTREKLQQYAREH  677 (718)
T ss_pred             c---CcccCHHHHHHHHHhc
Confidence            4   3346778898888764

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.89  E-value=4.1e-22  Score=159.70  Aligned_cols=128  Identities=35%  Similarity=0.578  Sum_probs=110.8

Q ss_pred             cCccccC-CceEEEEcCCCCccCCC-C-CeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE--
Q psy4966          18 TGKHFQE-HNAIKIIDPVTSVQLPD-G-KTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--   91 (149)
Q Consensus        18 ~g~~p~~-~~~~~i~d~~~g~~~~~-g-~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--   91 (149)
                      .|. +++ ...++++|++++.+++. | ..|||+++|+. +.||+++++.+...| .++||+|||++++|++|+++|+  
T Consensus       360 ~g~-~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR  437 (545)
T PRK08162        360 QGV-RYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDR  437 (545)
T ss_pred             CCc-ccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEec
Confidence            344 444 34678889667888876 3 46999999999 999999999999888 5789999999999999999996  


Q ss_pred             ------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhcc
Q psy4966          92 ------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus        92 ------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                                  +|.+||++|..+++|.+++|++.+++..++.+++++++.++...+.++|+++|++.
T Consensus       438 ~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~  505 (545)
T PRK08162        438 SKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREH  505 (545)
T ss_pred             ccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence                        89999999999999999999999988888999999998877667888898888764

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.89  E-value=3.9e-22  Score=169.95  Aligned_cols=139  Identities=15%  Similarity=0.181  Sum_probs=112.7

Q ss_pred             CeeeeccCCcccc-------cccCcCccccCCc-eEEEE-----------cCCCC--ccCCCCCeeEEEEEcCCCccccC
Q psy4966           1 MFLVVGLVGKSKQ-------KATLTGKHFQEHN-AIKII-----------DPVTS--VQLPDGKTGELCLKGDVFLGYRN   59 (149)
Q Consensus         1 ~~~~~g~~e~~~~-------~~~~~g~~p~~~~-~~~i~-----------d~~~g--~~~~~g~~Gel~v~~~~~~gY~~   59 (149)
                      ++..||+||.+..       ...++|+ |+|++ +++|.           + ++|  +++++|+.|||+++++.   |+ 
T Consensus       747 l~~~YG~TE~~~~~~~~~~~~~~svG~-p~pg~~~v~i~~~d~~~g~li~d-~~G~~~~~~~ge~Gel~~~~~~---~~-  820 (994)
T PRK07868        747 VVEFFATTDGQAVLANVSGAKIGSKGR-PLPGAGRVELAAYDPEHDLILED-DRGFVRRAEVNEVGVLLARARG---PI-  820 (994)
T ss_pred             eeeeeecccccccccccCCCCCcccCC-ccCCCCceeEEEecCcCCceeec-CCceEEEcCCCCceEEEEecCC---CC-
Confidence            4678999997532       3467898 99997 66653           4 456  67889999999999986   22 


Q ss_pred             Cchhhh--cccC-CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCe
Q psy4966          60 KVEATK--EMLD-DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGEL  122 (149)
Q Consensus        60 ~~~~~~--~~~~-~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~  122 (149)
                      +|+.+.  ..|. .+|||+|||+|++|+||+|+|+              +|.|||++|.+||+|.+|+|++++++. ++.
T Consensus       821 ~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~  899 (994)
T PRK07868        821 DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQL  899 (994)
T ss_pred             ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-Cce
Confidence            344332  2342 4799999999999999999997              899999999999999999999998876 688


Q ss_pred             EEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966         123 PAAVVVPKPNSSVTAEEVKQFVEF  146 (149)
Q Consensus       123 ~~a~v~~~~~~~~~~~~l~~~l~~  146 (149)
                      ++++|+++++...+.++|+++|++
T Consensus       900 ~~a~Vv~~~~~~~~~~~L~~~l~~  923 (994)
T PRK07868        900 AVAAVTLRPGAAITAADLTEALAS  923 (994)
T ss_pred             EEEEEEeCCCCcCCHHHHHHHHHh
Confidence            999999988777888999999874

>PRK05691 peptide synthase; Validated

Probab=99.89  E-value=2.7e-22  Score=187.90  Aligned_cols=144  Identities=22%  Similarity=0.258  Sum_probs=124.3

Q ss_pred             CeeeeccCCcccc-----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ-----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~-----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++..           ...++|+ |++++.++|+| ++++++|.|.+|||+|+|+. +.||+++|+.|++.|
T Consensus      1417 l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f 1494 (4334)
T PRK05691       1417 LHNRYGPTETAINVTHWQCQAEDGERSPIGR-PLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERF 1494 (4334)
T ss_pred             EEeCCCcChheeeeeeeecccccCCCCcccc-eeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhC
Confidence            3678999997631           2345788 99999999999 88999999999999999999 999999999999988


Q ss_pred             CC-------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEE
Q psy4966          69 DD-------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV  127 (149)
Q Consensus        69 ~~-------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v  127 (149)
                      ..       .+||+|||++++++||+++|+              +|.|||++|.++|+|.+++|++..+. .|+.+++++
T Consensus      1495 ~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~ 1573 (4334)
T PRK05691       1495 VPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYY 1573 (4334)
T ss_pred             CCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEE
Confidence            43       359999999999999999997              99999999999999999999865444 468899999


Q ss_pred             EeCCCCCCCHHHHHHHhhcc
Q psy4966         128 VPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       128 ~~~~~~~~~~~~l~~~l~~~  147 (149)
                      +...+...+.++|+++|++.
T Consensus      1574 ~~~~~~~~~~~~l~~~l~~~ 1593 (4334)
T PRK05691       1574 TGEAGQEAEAERLKAALAAE 1593 (4334)
T ss_pred             EeCCCCCCCHHHHHHHHHHh
Confidence            98777667778898888764

>PRK12467 peptide synthase; Provisional

Probab=99.89  E-value=2.9e-22  Score=186.72  Aligned_cols=144  Identities=26%  Similarity=0.291  Sum_probs=121.3

Q ss_pred             CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++..              ...++|+ |++++.++|+| ++++++|.|.+|||+|+|+. +.||+++|+.|+
T Consensus      1863 l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~-p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~ 1940 (3956)
T PRK12467       1863 LFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQ-PIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLNRPALTA 1940 (3956)
T ss_pred             EEeCccCCcCEEeEEEEeccccccccCCCCCccc-ccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccccCChhhhh
Confidence            4688999998621              1246788 99999999999 88999999999999999999 999999999999


Q ss_pred             cccCC-------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966          66 EMLDD-------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA  124 (149)
Q Consensus        66 ~~~~~-------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~  124 (149)
                      +.|..       .+||+|||++++++||+++|+              +|.|||++|.++|+|.+|+|++.+ ...++.++
T Consensus      1941 ~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lv 2019 (3956)
T PRK12467       1941 ERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLV 2019 (3956)
T ss_pred             hhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEE
Confidence            98842       359999999999999999997              999999999999999999999886 44568899


Q ss_pred             EEEEeCCCCCC--------CHHHHHHHhhcc
Q psy4966         125 AVVVPKPNSSV--------TAEEVKQFVEFP  147 (149)
Q Consensus       125 a~v~~~~~~~~--------~~~~l~~~l~~~  147 (149)
                      ++++...+...        ..++|+++|++.
T Consensus      2020 a~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~ 2050 (3956)
T PRK12467       2020 AYVVPTDPGLVDDDEAQVALRAILKNHLKAS 2050 (3956)
T ss_pred             EEEEecCcccccccccccccHHHHHHHHHhh
Confidence            99987654322        345677777654

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.89  E-value=2.5e-22  Score=162.12  Aligned_cols=107  Identities=32%  Similarity=0.574  Sum_probs=94.1

Q ss_pred             CceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC-----------CCCeEEcCceEEEcCCCeEEEE-
Q psy4966          25 HNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-----------DDGWLHTGDLAYRLPDGTHFII-   91 (149)
Q Consensus        25 ~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~G~~~i~-   91 (149)
                      +.+++++|++++.+++.|+.|||+++|+. +.|||++++.+++.|.           .++||+|||+++++ +|+++|+ 
T Consensus       378 ~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~G  456 (578)
T PRK05850        378 SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVG  456 (578)
T ss_pred             CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEc
Confidence            47899999777889999999999999999 9999999999998884           25799999999998 8999997 


Q ss_pred             -------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          92 -------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        92 -------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                                   +|.|||++|.+|+.+ +++++++++. +++.++++|+++++..
T Consensus       457 R~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~  510 (578)
T PRK05850        457 RIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGD  510 (578)
T ss_pred             ccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccC
Confidence                         999999999999985 5788888887 6888999999876543

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.88  E-value=1.6e-21  Score=156.43  Aligned_cols=143  Identities=30%  Similarity=0.373  Sum_probs=121.0

Q ss_pred             CeeeeccCCccccc--------------------ccCcCccccCCceEEEEcCCCCccCCCC--CeeEEEEEcCC-Cccc
Q psy4966           1 MFLVVGLVGKSKQK--------------------ATLTGKHFQEHNAIKIIDPVTSVQLPDG--KTGELCLKGDV-FLGY   57 (149)
Q Consensus         1 ~~~~~g~~e~~~~~--------------------~~~~g~~p~~~~~~~i~d~~~g~~~~~g--~~Gel~v~~~~-~~gY   57 (149)
                      ++..||+||++...                    ..++|+ |+++++++++| +++++++.+  ..|||+++|+. +.||
T Consensus       321 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy  398 (542)
T PRK06018        321 VRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGY-PPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAY  398 (542)
T ss_pred             eEeeecccccCcccccccCccccccCCchhhhhccccCCC-CCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhh
Confidence            46789999986321                    135677 99999999999 788888763  67999999999 9999


Q ss_pred             cCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeE
Q psy4966          58 RNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELP  123 (149)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~  123 (149)
                      |++.   ...++.++||+|||+++++++|++++.              ++.|||+.|.++|+|.+++|++.++..+++.+
T Consensus       399 ~~~~---~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  475 (542)
T PRK06018        399 YRVD---GEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERP  475 (542)
T ss_pred             hcCc---ccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCcee
Confidence            9843   334556899999999999999999886              89999999999999999999999999888999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHhhccc
Q psy4966         124 AAVVVPKPNSSVTAEEVKQFVEFPR  148 (149)
Q Consensus       124 ~a~v~~~~~~~~~~~~l~~~l~~~~  148 (149)
                      .+++++.++...+.+.+.+++++..
T Consensus       476 ~~~v~~~~~~~~~~~~l~~~~~~~l  500 (542)
T PRK06018        476 LLIVQLKPGETATREEILKYMDGKI  500 (542)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHhhC
Confidence            9999988877788888888887653

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.88  E-value=1.3e-21  Score=154.99  Aligned_cols=142  Identities=29%  Similarity=0.347  Sum_probs=117.3

Q ss_pred             eeeeccCCccc--------------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhc
Q psy4966           2 FLVVGLVGKSK--------------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKE   66 (149)
Q Consensus         2 ~~~~g~~e~~~--------------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~   66 (149)
                      +..||+||++.              ....++|. |+++++++|+| +++.+++.|..|||+++|+. +.||+++++.+..
T Consensus       290 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  367 (503)
T PRK04813        290 YNTYGPTEATVAVTSIEITDEMLDQYKRLPIGY-AKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAE  367 (503)
T ss_pred             EeCcccchheeEEEEEEecccccccCCCCcccc-cCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHH
Confidence            57899999742              12335777 99999999999 88999999999999999999 9999999999988


Q ss_pred             ccC---CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEe
Q psy4966          67 MLD---DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP  129 (149)
Q Consensus        67 ~~~---~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~  129 (149)
                      .|.   +.+||+|||++++ ++|++++.              +|.+||+.|.++|+|+++++++.++...++.++++++.
T Consensus       368 ~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  446 (503)
T PRK04813        368 AFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVP  446 (503)
T ss_pred             hhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEe
Confidence            773   2359999999999 89999986              89999999999999999999998877777889999987


Q ss_pred             CCCCCC-C---HHHHHHHhhc
Q psy4966         130 KPNSSV-T---AEEVKQFVEF  146 (149)
Q Consensus       130 ~~~~~~-~---~~~l~~~l~~  146 (149)
                      .++... .   .++++++|++
T Consensus       447 ~~~~~~~~~~~~~~l~~~~~~  467 (503)
T PRK04813        447 KEEDFEREFELTKAIKKELKE  467 (503)
T ss_pred             ccccccccchhHHHHHHHHHh
Confidence            653211 1   1346666654

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.88  E-value=1.5e-21  Score=149.44  Aligned_cols=130  Identities=28%  Similarity=0.461  Sum_probs=111.1

Q ss_pred             CeeeeccCCcccccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCce
Q psy4966           1 MFLVVGLVGKSKQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDL   79 (149)
Q Consensus         1 ~~~~~g~~e~~~~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~   79 (149)
                      ++..||+||++... ...|. |+|++++++.+            |+|+++|+. +.||++++..+  .|..++||+|||+
T Consensus       178 v~~~YG~TE~~~~~-~~~G~-~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl  241 (358)
T PRK07824        178 VVRTYGMSETSGGC-VYDGV-PLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDL  241 (358)
T ss_pred             EEecccCCccCCCc-CcCce-eCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCceecccE
Confidence            36789999986532 34577 99999999844            899999999 99999988754  3445789999999


Q ss_pred             EEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhh
Q psy4966          80 AYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE  145 (149)
Q Consensus        80 ~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~  145 (149)
                      +++ ++|++++.              +|.+||++|.+||+|.+++|++.+++..|+.++++++...+...+.++|+++++
T Consensus       242 ~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~  320 (358)
T PRK07824        242 GAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVA  320 (358)
T ss_pred             EEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHH
Confidence            999 89999886              999999999999999999999999999999999999887766778888988887


Q ss_pred             cc
Q psy4966         146 FP  147 (149)
Q Consensus       146 ~~  147 (149)
                      +.
T Consensus       321 ~~  322 (358)
T PRK07824        321 RT  322 (358)
T ss_pred             hh
Confidence            64

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.88  E-value=7.7e-22  Score=155.26  Aligned_cols=129  Identities=26%  Similarity=0.437  Sum_probs=111.3

Q ss_pred             eeeeccCCccccc-------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCe
Q psy4966           2 FLVVGLVGKSKQK-------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGW   73 (149)
Q Consensus         2 ~~~~g~~e~~~~~-------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~   73 (149)
                      +..||+||++...       ..++|. |++++.+++.+            |||+++|+. +.||+++++.+.... .++|
T Consensus       268 ~~~YG~tE~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~  333 (458)
T PRK09029        268 WCGYGLTEMASTVCAKRADGLAGVGS-PLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGW  333 (458)
T ss_pred             eccccccccCcceeccCCCCCCCCCC-CCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCc
Confidence            5789999986321       235787 99999999987            899999999 999999988876544 6799


Q ss_pred             EEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHH
Q psy4966          74 LHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEE  139 (149)
Q Consensus        74 ~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~  139 (149)
                      |+|||+|++| +|+++|.              +|.|||++|.++++|.+++|++.+++.+|+.++++|+++.  ..+.++
T Consensus       334 ~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~  410 (458)
T PRK09029        334 FATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVVN  410 (458)
T ss_pred             cCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHHH
Confidence            9999999999 9999997              8999999999999999999999999999999999998763  357788


Q ss_pred             HHHHhhcc
Q psy4966         140 VKQFVEFP  147 (149)
Q Consensus       140 l~~~l~~~  147 (149)
                      |+++|+++
T Consensus       411 l~~~~~~~  418 (458)
T PRK09029        411 LAEWLQDK  418 (458)
T ss_pred             HHHHHHhh
Confidence            88888764

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.87  E-value=3e-21  Score=160.12  Aligned_cols=141  Identities=23%  Similarity=0.183  Sum_probs=112.5

Q ss_pred             eeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCC--eeEEEEEcCC---CccccCCchhhhc
Q psy4966           2 FLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGK--TGELCLKGDV---FLGYRNKVEATKE   66 (149)
Q Consensus         2 ~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~--~Gel~v~~~~---~~gY~~~~~~~~~   66 (149)
                      ...||+||.+.          ...+++|+ |+++++++++| ++|++++.|+  .|||+++++.   ..+|+++. ....
T Consensus       501 ~~~yG~TE~~~~~~~~~~~~~~~~g~~g~-p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~  577 (728)
T PLN03052        501 IEYCGGTELGGGFVTGSLLQPQAFAAFST-PAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKV  577 (728)
T ss_pred             EeeccChhhCcccccCCCCCCCCCCcccc-CCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhh
Confidence            46899999753          22356777 99999999999 8999999985  5999998764   34566653 3444


Q ss_pred             ccC------CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHh-cCCCcccEEEEeeecCCCC-CeEE
Q psy4966          67 MLD------DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFR-QHPDVEDVAVIGIPHDVFG-ELPA  124 (149)
Q Consensus        67 ~~~------~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~  124 (149)
                      .|.      ...||+|||++++|++|+++|+              ++.|||++|. .||+|.+++|++++++..| ++++
T Consensus       578 yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~  657 (728)
T PLN03052        578 YFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLV  657 (728)
T ss_pred             hhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEE
Confidence            442      2239999999999999999997              9999999995 7999999999999998877 8899


Q ss_pred             EEEEeC--CCCCCCHHHHHHHhh
Q psy4966         125 AVVVPK--PNSSVTAEEVKQFVE  145 (149)
Q Consensus       125 a~v~~~--~~~~~~~~~l~~~l~  145 (149)
                      +||++.  ++...+.++|+++++
T Consensus       658 afVvl~~~~g~~~~~~~L~~~i~  680 (728)
T PLN03052        658 IAAVLKDPPGSNPDLNELKKIFN  680 (728)
T ss_pred             EEEEEecCCCCCCCHHHHHHHHH
Confidence            999987  555566667776654

>PRK05691 peptide synthase; Validated

Probab=99.87  E-value=1.9e-21  Score=182.33  Aligned_cols=143  Identities=24%  Similarity=0.303  Sum_probs=119.1

Q ss_pred             eeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhc
Q psy4966           2 FLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKE   66 (149)
Q Consensus         2 ~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~   66 (149)
                      +..||+||++..              ...++|+ |++++.++|+| ++++++|.|.+|||+|+|+. +.||+++|+.|++
T Consensus      2478 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~-pi~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~t~~ 2555 (4334)
T PRK05691       2478 FNAYGPTETVVMPLACLAPEQLEEGAASVPIGR-VVGARVAYILD-ADLALVPQGATGELYVGGAGLAQGYHDRPGLTAE 2555 (4334)
T ss_pred             EeCcCCCcceEEEEEeecccccccCCCCCcccc-ccCCCEEEEEC-CCCCCCCCCCceEEEecccccCccccCChhhhhh
Confidence            578999998521              1123677 99999999999 88999999999999999999 9999999999999


Q ss_pred             ccCC-------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEE
Q psy4966          67 MLDD-------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA  125 (149)
Q Consensus        67 ~~~~-------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a  125 (149)
                      .|..       ++||+|||++++++||+++|+              +|.|||++|.+||+|.+++|++..+ ..++.+++
T Consensus      2556 ~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~-~~~~~lva 2634 (4334)
T PRK05691       2556 RFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDT-PSGKQLAG 2634 (4334)
T ss_pred             hccCCCCCCCCCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeC-CCCcEEEE
Confidence            8853       359999999999999999997              9999999999999999999998854 45788999


Q ss_pred             EEEeCCC------CCCCHHHHHHHhhcc
Q psy4966         126 VVVPKPN------SSVTAEEVKQFVEFP  147 (149)
Q Consensus       126 ~v~~~~~------~~~~~~~l~~~l~~~  147 (149)
                      +++....      .....+.|+++|++.
T Consensus      2635 ~vv~~~~~~~~~~~~~~~~~l~~~l~~~ 2662 (4334)
T PRK05691       2635 YLVSAVAGQDDEAQAALREALKAHLKQQ 2662 (4334)
T ss_pred             EEEecccccccccccccHHHHHHHHHhh
Confidence            9887432      122346788877754

>KOG1180|consensus

Probab=99.87  E-value=9.6e-22  Score=153.90  Aligned_cols=127  Identities=30%  Similarity=0.432  Sum_probs=110.4

Q ss_pred             CeeeeccCCccccc---------ccCcCccccCCceEEEEcCCCCccCCCCC--eeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQK---------ATLTGKHFQEHNAIKIIDPVTSVQLPDGK--TGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~~---------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~--~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      |.+.||+||+....         .+.+|. |++.++++++|.++|-=.+.+.  .|||+|+|+. ..|||+|++.|++.|
T Consensus       430 v~qGYGLTEtca~~tv~e~~d~~~g~vG~-pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~f  508 (678)
T KOG1180|consen  430 VLQGYGLTETCAAATVLEPEDFSTGRVGA-PLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDF  508 (678)
T ss_pred             ccccccccchhcccEecChhhcccccccC-CccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhc
Confidence            57899999997643         345777 9999999999997774444444  7999999999 999999999999999


Q ss_pred             CC-CC--eEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          69 DD-DG--WLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        69 ~~-~~--~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      .. +|  ||+|||+|++.+||.|.|+               +++.||.++...|-|...+|++-.....   ++++|+++
T Consensus       509 t~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~---~VaiVVPn  585 (678)
T KOG1180|consen  509 TVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSK---PVAIVVPN  585 (678)
T ss_pred             eecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccce---eEEEEcCC
Confidence            76 78  9999999999999999997               9999999999999999999998666544   99999976


Q ss_pred             C
Q psy4966         131 P  131 (149)
Q Consensus       131 ~  131 (149)
                      .
T Consensus       586 ~  586 (678)
T KOG1180|consen  586 Q  586 (678)
T ss_pred             c
Confidence            4

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.86  E-value=6.5e-21  Score=164.11  Aligned_cols=136  Identities=21%  Similarity=0.213  Sum_probs=111.4

Q ss_pred             eeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCC
Q psy4966           2 FLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD   71 (149)
Q Consensus         2 ~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~   71 (149)
                      +..||+||++.         ....++|+ |+|++++++.+ ..+    .++.|||+++|+. +.||++++.........+
T Consensus       936 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~g~~~~~~~-~~~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~ 1009 (1140)
T PRK06814        936 LEGYGVTETAPVIALNTPMHNKAGTVGR-LLPGIEYRLEP-VPG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPAD 1009 (1140)
T ss_pred             EeccccccccceEEecCCCCCCCCcCCc-cCCCCeEEEee-cCC----CCCceEEEEeCCCcchhhcCCCCCCccccCCC
Confidence            57899999863         23457888 99999999987 433    3678999999999 999998765433222358


Q ss_pred             CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCH
Q psy4966          72 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA  137 (149)
Q Consensus        72 ~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~  137 (149)
                      |||+|||++++|+||++++.              +|.|||++|.+|+.+.+++|++++++..|+.+++++.   ....+.
T Consensus      1010 g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~ 1086 (1140)
T PRK06814       1010 GWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATR 1086 (1140)
T ss_pred             CeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCH
Confidence            99999999999999999997              8999999999999999999999999999998877654   234667


Q ss_pred             HHHHHHhhc
Q psy4966         138 EEVKQFVEF  146 (149)
Q Consensus       138 ~~l~~~l~~  146 (149)
                      +++.+++++
T Consensus      1087 ~~l~~~~~~ 1095 (1140)
T PRK06814       1087 AAFLAHAKA 1095 (1140)
T ss_pred             HHHHHHHHH
Confidence            888888875

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.86  E-value=1.5e-21  Score=159.24  Aligned_cols=111  Identities=23%  Similarity=0.290  Sum_probs=93.4

Q ss_pred             eeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCC
Q psy4966           2 FLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD   71 (149)
Q Consensus         2 ~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~   71 (149)
                      +..||+||++..         ...++|+ |+|++++++++        .|+.|||+++|+. +.|||++|+.+.+.|..+
T Consensus       381 ~~~YG~TE~~~~~~~~~~~~~~~~svG~-p~pg~~v~i~~--------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~d  451 (624)
T PRK12582        381 YTGYGATETAPTTTGTHWDTERVGLIGL-PLPGVELKLAP--------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEE  451 (624)
T ss_pred             EeccccccccceeecccCCCCCCCCCCc-CCCCcEEEEcc--------CCCceEEEEECCcccccccCCccchhhhcCcc
Confidence            578999998642         2357888 99999999864        4778999999999 999999999999999778


Q ss_pred             CeEEcCceEEE-c---CCCeEEEE---------------ChHHH--HHHHhcCCCcccEEEEeeecCCCCC
Q psy4966          72 GWLHTGDLAYR-L---PDGTHFII---------------SPCEL--ESIFRQHPDVEDVAVIGIPHDVFGE  121 (149)
Q Consensus        72 ~~~~TGD~~~~-~---~~G~~~i~---------------~~~eI--E~~l~~~~~V~~~~v~~~~~~~~g~  121 (149)
                      |||+|||+|++ |   ++|+++|+               ++.+|  |.++.+||.|.+++|++.+++..|.
T Consensus       452 gw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~  522 (624)
T PRK12582        452 GFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGL  522 (624)
T ss_pred             CCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEE
Confidence            99999999998 4   46899886               56666  5688999999999999997776443

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.86  E-value=2.5e-20  Score=148.41  Aligned_cols=145  Identities=24%  Similarity=0.324  Sum_probs=120.6

Q ss_pred             CeeeeccCCcccccc-------cCcC-ccccCCceEEEEcCCCCccCCCCCe--eEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQKA-------TLTG-KHFQEHNAIKIIDPVTSVQLPDGKT--GELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~~~-------~~~g-~~p~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+....       ...| ..+.++..+++++ ++++++++|..  |+|+. ++. +.||++++..++..|.
T Consensus       325 ~~~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~~-~~~~~~gy~~~~~~t~~~f~  402 (533)
T PRK07798        325 LTDSIGSSETGFGGSGTVAKGAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIAR-RGHIPLGYYKDPEKTAETFP  402 (533)
T ss_pred             EEeeecccccccccccCCCCCCccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEEe-ecCccccccCChhhhHHhhc
Confidence            357899999753221       1233 1377899999999 78889999988  76664 556 9999999999988874


Q ss_pred             C---CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          70 D---DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        70 ~---~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                      .   .+||+|||++++|++|++++.              ++.+||++|.+++.|.++++++.++..+|+.+.+++++.++
T Consensus       403 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  482 (533)
T PRK07798        403 TIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREG  482 (533)
T ss_pred             cCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCC
Confidence            2   369999999999999999997              89999999999999999999999988889999999998877


Q ss_pred             CCCCHHHHHHHhhcc
Q psy4966         133 SSVTAEEVKQFVEFP  147 (149)
Q Consensus       133 ~~~~~~~l~~~l~~~  147 (149)
                      ...+.++|+++|++.
T Consensus       483 ~~~~~~~l~~~l~~~  497 (533)
T PRK07798        483 ARPDLAELRAHCRSS  497 (533)
T ss_pred             CCCCHHHHHHHHhhh
Confidence            777888999988764

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.85  E-value=1.9e-20  Score=151.99  Aligned_cols=145  Identities=19%  Similarity=0.255  Sum_probs=110.0

Q ss_pred             CeeeeccCCcccc------cccCcCccccC----Cce---------EEEEcCCCC--ccCCCCCeeEEE--EEcCC-Ccc
Q psy4966           1 MFLVVGLVGKSKQ------KATLTGKHFQE----HNA---------IKIIDPVTS--VQLPDGKTGELC--LKGDV-FLG   56 (149)
Q Consensus         1 ~~~~~g~~e~~~~------~~~~~g~~p~~----~~~---------~~i~d~~~g--~~~~~g~~Gel~--v~~~~-~~g   56 (149)
                      ++..||+||.+..      ...++|. +.+    +..         ..+.+ .++  .++++|+.|||+  ++++. +.|
T Consensus       341 l~~~YG~tE~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~G  418 (600)
T PRK08279        341 ILEFYAASEGNVGFINVFNFDGTVGR-VPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDG  418 (600)
T ss_pred             eeeeecccccceeecccCCCCccccc-ccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCcccccc
Confidence            4678999997632      2245665 333    222         22333 223  357889999998  67888 999


Q ss_pred             ccCCchhhhcccC------CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeec
Q psy4966          57 YRNKVEATKEMLD------DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPH  116 (149)
Q Consensus        57 Y~~~~~~~~~~~~------~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~  116 (149)
                      | +++..+...|.      .++||+|||+|+++++|++++.              +|.|||++|.++|+|.+|+|+++++
T Consensus       419 Y-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~  497 (600)
T PRK08279        419 Y-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEV  497 (600)
T ss_pred             c-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeec
Confidence            9 88888877652      3689999999999999999997              8999999999999999999999987


Q ss_pred             CCC-CCeEEEEEEeCCCCCCCHHHHHHHhhccc
Q psy4966         117 DVF-GELPAAVVVPKPNSSVTAEEVKQFVEFPR  148 (149)
Q Consensus       117 ~~~-g~~~~a~v~~~~~~~~~~~~l~~~l~~~~  148 (149)
                      +.. +...++++++.++...+.++++++|+++.
T Consensus       498 ~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L  530 (600)
T PRK08279        498 PGTDGRAGMAAIVLADGAEFDLAALAAHLYERL  530 (600)
T ss_pred             CCCCCccceeEEEecCCccCCHHHHHHHHHhhC
Confidence            764 45566677776666778889999988653

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.84  E-value=3.1e-20  Score=149.01  Aligned_cols=112  Identities=23%  Similarity=0.318  Sum_probs=92.4

Q ss_pred             cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE---
Q psy4966          16 TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII---   91 (149)
Q Consensus        16 ~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~---   91 (149)
                      .++|+ |+++++++++| ++++++++|+.|||+++|+. +.||++++.... .+..++||+|||+++++++|+++++   
T Consensus       360 ~~~G~-~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~  436 (545)
T PRK07768        360 ATLGP-PLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCGRV  436 (545)
T ss_pred             EeccC-CCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEEccc
Confidence            35777 99999999999 88999999999999999999 999998654443 3346789999999999999999987   


Q ss_pred             -----------ChHHHHHHHhcCCCcccEEEEeee--cCCCCCeEEEEEEeC
Q psy4966          92 -----------SPCELESIFRQHPDVEDVAVIGIP--HDVFGELPAAVVVPK  130 (149)
Q Consensus        92 -----------~~~eIE~~l~~~~~V~~~~v~~~~--~~~~g~~~~a~v~~~  130 (149)
                                 ++.|||++|.++++|.+++|+++.  +...++.+++++...
T Consensus       437 ~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~  488 (545)
T PRK07768        437 KDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESN  488 (545)
T ss_pred             cceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEec
Confidence                       899999999999999998877664  344455555555443

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.83  E-value=1.5e-19  Score=140.97  Aligned_cols=137  Identities=24%  Similarity=0.469  Sum_probs=112.1

Q ss_pred             CeeeeccCCcccccc----------cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSKQKA----------TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~~~~----------~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||.+....          .++|. |++++++++...+.      ++.|||+++|+. +.||++++..+...+ 
T Consensus       246 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-  317 (436)
T TIGR01923       246 IYLSYGMTETCSQVTTATPEMLHARPDVGR-PLAGREIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFE-  317 (436)
T ss_pred             eeeEecCCccchhccCcCccccccccCCCc-cCCCcEEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhh-
Confidence            367899999864211          23777 99999999844122      267999999999 999999888776655 


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      .++||+|||+++++++|++++.              ++.+||++|..++.|.++++++.++...+..+++++++..+  .
T Consensus       318 ~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~  395 (436)
T TIGR01923       318 QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--I  395 (436)
T ss_pred             cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--C
Confidence            5799999999999999999986              89999999999999999999999888878888899887753  5


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.+.+.++|++.
T Consensus       396 ~~~~l~~~l~~~  407 (436)
T TIGR01923       396 SQAKLIAYLTEK  407 (436)
T ss_pred             CHHHHHHHHHHh
Confidence            677777777653

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.82  E-value=3e-20  Score=143.61  Aligned_cols=109  Identities=28%  Similarity=0.410  Sum_probs=95.2

Q ss_pred             CeeeeccCCccccc--------------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQK--------------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~~--------------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||.+...              ..++|. |+++++++|++ ++++.++.|+.|||+++++. +.||+++++.+.
T Consensus       263 i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~  340 (408)
T TIGR01733       263 LINLYGPTETTVWSTATLVDADDAPRESPVPIGR-PLANTRLYVLD-DDLRPVPVGVVGELYIGGPGVARGYLNRPELTA  340 (408)
T ss_pred             EEecccCCceEEEEEEEEcCccccCCccccccCc-ccCCceEEEEC-CCCCCCCCCCceEEEecCccccccccCChhhhh
Confidence            35789999986422              456888 99999999999 55999999999999999999 999999999998


Q ss_pred             cccCCC------C--eEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEE
Q psy4966          66 EMLDDD------G--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAV  111 (149)
Q Consensus        66 ~~~~~~------~--~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v  111 (149)
                      ..|..+      +  ||+|||++++|++|++++.              +|.+||++|..++.|.+++|
T Consensus       341 ~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       341 ERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             cceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            877432      2  9999999999999999887              89999999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.77  E-value=7.4e-19  Score=136.39  Aligned_cols=90  Identities=37%  Similarity=0.575  Sum_probs=79.7

Q ss_pred             CeeeeccCCcccc-----------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ-----------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~-----------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+..           ...++|. |+|+++++|+|+++++++++|+.|||+++|+. +.||+++++.+.+.|
T Consensus       306 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~  384 (417)
T PF00501_consen  306 IINLYGSTETGSIATIRPPEDDIEKPGSVGK-PLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAF  384 (417)
T ss_dssp             EEEEEEEGGGSSEEEEEETTTHHSSTTSEBE-ESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHE
T ss_pred             ceecccccccceeeecccccccccccccccc-cccccccccccccccccccccccccccccCCccceeeecccccccccc
Confidence            3678999998753           2345787 99999999999666999999999999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII   91 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~   91 (149)
                      ..+|||+|||+|++|++|+++++
T Consensus       385 ~~~~~~~TGD~g~~d~~G~~~~~  407 (417)
T PF00501_consen  385 IDDGWYRTGDLGRLDEDGYLYIL  407 (417)
T ss_dssp             ETTSEEEEEEEEEEETTSEEEEE
T ss_pred             ccccceecceEEEECCCCeEEEE
Confidence            76689999999999999999986

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.74  E-value=5.1e-17  Score=126.62  Aligned_cols=120  Identities=20%  Similarity=0.242  Sum_probs=99.5

Q ss_pred             CeeeeccCCccc-------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCe
Q psy4966           1 MFLVVGLVGKSK-------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGW   73 (149)
Q Consensus         1 ~~~~~g~~e~~~-------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~   73 (149)
                      ++..||+||++.       ....++|+ |+|++++++.+ +      .++.|||++++                  .++|
T Consensus       239 ~~~~YG~tE~~~~~~~~~~~~~~~~G~-p~~~~~~~~~~-~------~~~~gel~v~~------------------~~~~  292 (414)
T PRK08308        239 MMQQYGCSEAGCVSICPDMKSHLDLGN-PLPHVSVSAGS-D------ENAPEEIVVKM------------------GDKE  292 (414)
T ss_pred             hhhccCccccCCeeecCCCCCCCccCc-cCCCeEEEEec-C------CCCCceEEEEc------------------CCce
Confidence            356899999863       23346788 99999999876 3      25679999953                  2589


Q ss_pred             EEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHH
Q psy4966          74 LHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEE  139 (149)
Q Consensus        74 ~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~  139 (149)
                      |+|||+++++++|+++++              +|.|||++|.++++|.+++|++.+++..|+.+.++++...  ..+.++
T Consensus       293 ~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~~  370 (414)
T PRK08308        293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPVQ  370 (414)
T ss_pred             EECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHHH
Confidence            999999999999999986              8999999999999999999999999998999999888764  467788


Q ss_pred             HHHHhhccc
Q psy4966         140 VKQFVEFPR  148 (149)
Q Consensus       140 l~~~l~~~~  148 (149)
                      ++++|+++.
T Consensus       371 l~~~l~~~l  379 (414)
T PRK08308        371 LREWCIQHL  379 (414)
T ss_pred             HHHHHHHhC
Confidence            888887643

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.62  E-value=4.7e-15  Score=114.15  Aligned_cols=75  Identities=20%  Similarity=0.283  Sum_probs=68.0

Q ss_pred             CCCeEEcCceEEE-cCCCeEEEE------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          70 DDGWLHTGDLAYR-LPDGTHFII------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        70 ~~~~~~TGD~~~~-~~~G~~~i~------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      .+|||+|||+|++ |++|+|+|.            +|. ||++|.+||+|.+|+|++++++.+|+.++|+|++.+  ..+
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~--~~~  283 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEGTGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL--PAD  283 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCcCCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC--CCC
Confidence            6899999999998 799999995            677 999999999999999999999999999999999874  467


Q ss_pred             HHHHHHHhhcc
Q psy4966         137 AEEVKQFVEFP  147 (149)
Q Consensus       137 ~~~l~~~l~~~  147 (149)
                      .++|+++|++.
T Consensus       284 ~~el~~~l~~~  294 (365)
T PRK09188        284 EKSLRARLAGA  294 (365)
T ss_pred             HHHHHHHHHhh
Confidence            78999998875

>KOG1179|consensus

Probab=99.57  E-value=5.8e-14  Score=110.90  Aligned_cols=145  Identities=24%  Similarity=0.277  Sum_probs=110.2

Q ss_pred             CeeeeccCCcccccc------cCcCccccC-----CceEE---------EEcCCCC--ccCCCCCeeEEEEE----cCC-
Q psy4966           1 MFLVVGLVGKSKQKA------TLTGKHFQE-----HNAIK---------IIDPVTS--VQLPDGKTGELCLK----GDV-   53 (149)
Q Consensus         1 ~~~~~g~~e~~~~~~------~~~g~~p~~-----~~~~~---------i~d~~~g--~~~~~g~~Gel~v~----~~~-   53 (149)
                      ++..||.||.+....      +.+|+.+.-     -.++.         ++| ++|  .+|++|++|.|+-+    .|. 
T Consensus       384 IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd-~~G~Ci~~~~GEpGlLv~~i~~k~P~~  462 (649)
T KOG1179|consen  384 IGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRD-SQGLCIPCPPGEPGLLVGKIVQKNPLR  462 (649)
T ss_pred             EEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeec-CCceEEECCCCCCceEEEEeccCCchh
Confidence            467899999986433      233332221     12222         334 444  46789999976643    353 


Q ss_pred             -CccccCCchhhhccc------CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEE
Q psy4966          54 -FLGYRNKVEATKEML------DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVI  112 (149)
Q Consensus        54 -~~gY~~~~~~~~~~~------~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~  112 (149)
                       |.||.++...++++.      .+|-||.|||+-.+|+.|++||.              ++.|||.+|..+.+++|+.|+
T Consensus       463 ~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VY  542 (649)
T KOG1179|consen  463 SFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVY  542 (649)
T ss_pred             hhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEE
Confidence             999999888877765      24569999999999999999998              999999999999999999999


Q ss_pred             eeecCC-CCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966         113 GIPHDV-FGELPAAVVVPKPNSSVTAEEVKQFVEF  146 (149)
Q Consensus       113 ~~~~~~-~g~~~~a~v~~~~~~~~~~~~l~~~l~~  146 (149)
                      ++.-+. .|..-+|.|++.+....|.+.+..++++
T Consensus       543 GV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~  577 (649)
T KOG1179|consen  543 GVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRE  577 (649)
T ss_pred             EEecCCccCccceEEEEecCcccchHHHHHHHHHh
Confidence            998887 4677888888888888888888887765

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.49  E-value=5.2e-13  Score=104.64  Aligned_cols=118  Identities=28%  Similarity=0.260  Sum_probs=83.3

Q ss_pred             eeeeccCCccc-ccc-----cCcCccccC--CceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCe
Q psy4966           2 FLVVGLVGKSK-QKA-----TLTGKHFQE--HNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGW   73 (149)
Q Consensus         2 ~~~~g~~e~~~-~~~-----~~~g~~p~~--~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~   73 (149)
                      +..||++|... ...     ...|. +++  +..++|+|+++++++++|+.|||++++..           ...+ ..+|
T Consensus       224 ~~~YG~tE~~~~~~~~~~~~~~~g~-~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~-----------~~~~-p~~r  290 (422)
T TIGR02155       224 TDIYGLSEVIGPGVAMECVETQDGL-HIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT-----------KEAL-PVIR  290 (422)
T ss_pred             EecccchhhcCCceeecccccCCCc-eEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC-----------cccc-ceee
Confidence            56899999731 111     11233 443  46778999778999999999999998743           1223 3579


Q ss_pred             EEcCceEEEcCC-C-----eEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          74 LHTGDLAYRLPD-G-----THFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        74 ~~TGD~~~~~~~-G-----~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                      |+|||+++++++ |     .++|.              +|.+||.+|..||+|...+.+........+.+.+.|+...+
T Consensus       291 y~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~  369 (422)
T TIGR02155       291 YRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPE  369 (422)
T ss_pred             EEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecC
Confidence            999999999775 4     23333              89999999999999986666666555545667777776543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.34  E-value=2.9e-12  Score=104.98  Aligned_cols=101  Identities=28%  Similarity=0.341  Sum_probs=87.5

Q ss_pred             eeeeccCCccccc-----------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           2 FLVVGLVGKSKQK-----------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         2 ~~~~g~~e~~~~~-----------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      +..||.||+....           ..+.|+ |++++++.++| ..++.+|.|..|||++.|.. +.||+++|+.|+..|.
T Consensus       516 ~~~ygpTe~~~~~~~~~~~~~~~~~~piG~-p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~  593 (642)
T COG1020         516 LNLYGPTEATLDAPSFPISAELESRVPIGR-PVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFI  593 (642)
T ss_pred             eeccCccHHhhheeeEEcccccCCCCCcce-eeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhh
Confidence            4668888854311           235777 99999999999 89999999999999999999 9999999999999996


Q ss_pred             CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCC
Q psy4966          70 DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHP  104 (149)
Q Consensus        70 ~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~  104 (149)
                      .+.+|+|||+++..++|.+.++              .+.|||.++..+|
T Consensus       594 ~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         594 ALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             hccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            5459999999999999999886              8999999998775

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.29  E-value=3.9e-11  Score=93.40  Aligned_cols=71  Identities=23%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC-
Q psy4966          72 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT-  136 (149)
Q Consensus        72 ~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~-  136 (149)
                      .|+.|||++++|++|+|+|+              +|.+||++|.+||+|.+++|..     .|++++++|+++++...+ 
T Consensus       275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~  349 (386)
T TIGR02372       275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAE  349 (386)
T ss_pred             ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHH
Confidence            37899999999999999997              9999999999999999998852     467899999988654333 


Q ss_pred             -HHHHHHHhhcc
Q psy4966         137 -AEEVKQFVEFP  147 (149)
Q Consensus       137 -~~~l~~~l~~~  147 (149)
                       .++|++++++.
T Consensus       350 ~~~~l~~~~~~~  361 (386)
T TIGR02372       350 LEIELRATAARH  361 (386)
T ss_pred             HHHHHHHHHHHh
Confidence             35677766654

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PTZ00297 pantothenate kinase; Provisional

Probab=98.84  E-value=3.3e-08  Score=87.35  Aligned_cols=113  Identities=20%  Similarity=0.159  Sum_probs=81.7

Q ss_pred             eeeeccCCccc----ccccCcCccccCCceEEEEcC-CCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEc
Q psy4966           2 FLVVGLVGKSK----QKATLTGKHFQEHNAIKIIDP-VTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHT   76 (149)
Q Consensus         2 ~~~~g~~e~~~----~~~~~~g~~p~~~~~~~i~d~-~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~T   76 (149)
                      ..+|+++|...    ......|+ |+|+++++|.+. +.+..   +..|||+++      |+++|+.|.+.+  ++|+..
T Consensus       782 ~~g~glTE~~~~~~~~~~~~~G~-PlpgvEvKI~~~~E~~~~---~~~GEIlvr------~~kdpe~T~e~~--~gW~~d  849 (1452)
T PTZ00297        782 CYVPCLREVFFLPSEGVFCVDGT-PAPSLQVDLEPFDEPSDG---AGIGQLVLA------KKGEPRRTLPIA--AQWKRD  849 (1452)
T ss_pred             EEecceEEeeeecCCCCcccCCe-ecCceEEEEcccccccCC---CCCCeEEEE------ECCChHHHHHhh--CcCccC
Confidence            34667776432    11112265 999999999873 22222   235999995      557899998854  689877


Q ss_pred             CceEEEcCCCeEEEE------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          77 GDLAYRLPDGTHFII------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        77 GD~~~~~~~G~~~i~------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      |.+-.+|.-..+.++      +|+.||+.+..+|.|.+++|++-..+.    ++|+|+++
T Consensus       850 G~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd  905 (1452)
T PTZ00297        850 RTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPN  905 (1452)
T ss_pred             CeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeC
Confidence            777777776666665      999999999999999999999864432    88888875

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.78  E-value=1.3e-08  Score=60.98  Aligned_cols=47  Identities=40%  Similarity=0.697  Sum_probs=42.8

Q ss_pred             HHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhcc
Q psy4966          95 ELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus        95 eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                      |||++|.+||+|.+|+|++.+++.+|+.++|++++      +.++|+++|+++
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~   47 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDK   47 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhh
Confidence            79999999999999999999999999999999998      448888888764

...

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.56  E-value=2.5e-06  Score=67.72  Aligned_cols=122  Identities=16%  Similarity=0.084  Sum_probs=69.5

Q ss_pred             eeeeccCCccccc-c-cCcCccccC--CceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcC
Q psy4966           2 FLVVGLVGKSKQK-A-TLTGKHFQE--HNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTG   77 (149)
Q Consensus         2 ~~~~g~~e~~~~~-~-~~~g~~p~~--~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TG   77 (149)
                      +..||+||.+... . ...|. .++  ...++|+||+++.++|+|+.|||++.+-.-.++     .  ..+ .==-|+||
T Consensus       233 ~~~YG~TE~~~~~~c~~~~g~-h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~-----r--~~~-PliRYrtg  303 (445)
T TIGR03335       233 YNTYGSTEGTMCGECQAVAGL-HVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGE-----R--CGS-LLINYDTE  303 (445)
T ss_pred             EecCChhhhhheEEecCCCCc-cccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCc-----c--CCc-eEEEeecC
Confidence            5689999975211 1 12344 443  478999997777889999999999966430000     0  000 00137899


Q ss_pred             ceEEEcC-----CCeE--------------EEE----ChHHHHHHHhcC---CCcccEEEEeeecCCCCC-eEEEEEEeC
Q psy4966          78 DLAYRLP-----DGTH--------------FII----SPCELESIFRQH---PDVEDVAVIGIPHDVFGE-LPAAVVVPK  130 (149)
Q Consensus        78 D~~~~~~-----~G~~--------------~i~----~~~eIE~~l~~~---~~V~~~~v~~~~~~~~g~-~~~a~v~~~  130 (149)
                      |++++..     .|.-              .|.    +|.+||++|.++   +++....-+.+.....++ .+...|...
T Consensus       304 D~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~  383 (445)
T TIGR03335       304 DTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECE  383 (445)
T ss_pred             ceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEec
Confidence            9888621     1321              111    999999999994   555444433332222222 344445554


Q ss_pred             CC
Q psy4966         131 PN  132 (149)
Q Consensus       131 ~~  132 (149)
                      +.
T Consensus       384 ~~  385 (445)
T TIGR03335       384 DK  385 (445)
T ss_pred             Cc
Confidence            43

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG3628|consensus

Probab=98.48  E-value=1.6e-06  Score=73.79  Aligned_cols=107  Identities=21%  Similarity=0.319  Sum_probs=78.6

Q ss_pred             CccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchh-hhccc---------CCCCeEEcCceEEEc----
Q psy4966          19 GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEA-TKEML---------DDDGWLHTGDLAYRL----   83 (149)
Q Consensus        19 g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~-~~~~~---------~~~~~~~TGD~~~~~----   83 (149)
                      |. ..+++++.|++|++-.+|.+|+.||||+.|.. +.+|++-.+. ....|         .+..|-||||+|++.    
T Consensus      1156 G~-~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~ 1234 (1363)
T KOG3628|consen 1156 GK-LPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSL 1234 (1363)
T ss_pred             Cc-ccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeec
Confidence            45 66899999999999999999999999999998 8877754221 11111         134699999999983    


Q ss_pred             --CCC----eEEEE--------------ChHHHHHHH-hcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          84 --PDG----THFII--------------SPCELESIF-RQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        84 --~~G----~~~i~--------------~~~eIE~~l-~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                        ..+    .+|++              +|.+||+.+ ..|+.|..|+|+-.     +..++.++.+..
T Consensus      1235 t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~-----~glvVvviE~~g 1298 (1363)
T KOG3628|consen 1235 TDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA-----TGLVVVVIECHG 1298 (1363)
T ss_pred             ccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEee-----CCeEEEEEEecC
Confidence              222    34444              899999988 66999999999864     334566666554

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=98.37  E-value=1.1e-05  Score=63.49  Aligned_cols=118  Identities=28%  Similarity=0.315  Sum_probs=77.9

Q ss_pred             eeeeccCCcccccccCc----Ccccc--CCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEE
Q psy4966           2 FLVVGLVGKSKQKATLT----GKHFQ--EHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLH   75 (149)
Q Consensus         2 ~~~~g~~e~~~~~~~~~----g~~p~--~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~   75 (149)
                      +.+||++|........|    |- .+  +..-+.++||++|+.+++|+.|||++..=.           ...+ .-=-|+
T Consensus       239 ~diYGltE~~g~g~~eC~~~~gl-hi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~-----------~~~~-PlIRYr  305 (438)
T COG1541         239 FDIYGLTEGFGPGAGECTERNGL-HIWEDHFIFEIVDPETGEQLPDGERGELVITTLT-----------KEGM-PLIRYR  305 (438)
T ss_pred             eeccccccccCCcccccccccCC-CcchhhceeeeecCCcCccCCCCCeeEEEEEecc-----------ccCc-ceEEEE
Confidence            56899999854321111    33 22  457888999999999999999999994322           1111 011489


Q ss_pred             cCceEEEcCC----CeEE---------------EE----ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          76 TGDLAYRLPD----GTHF---------------II----SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        76 TGD~~~~~~~----G~~~---------------i~----~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                      |||+..+.++    |+..               +.    +|.+||++|.+.+.+.....+-+.....-+.+..-|.+.++
T Consensus       306 tgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~  385 (438)
T COG1541         306 TGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE  385 (438)
T ss_pred             cCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence            9999999752    3221               11    99999999999999984443333333334567777777654

>KOG1178|consensus

Probab=97.95  E-value=5e-05  Score=65.35  Aligned_cols=77  Identities=22%  Similarity=0.337  Sum_probs=65.2

Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      +..|+|||.++.-.+|.+.+.              .+.||+.++..||.|.+++++...+...++.+.+|++.+.+.+.+
T Consensus       453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~  532 (1032)
T KOG1178|consen  453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV  532 (1032)
T ss_pred             hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch
Confidence            348999999988888888886              899999999999999999999999999999999999987654333


Q ss_pred             -HHHHHHHhhcc
Q psy4966         137 -AEEVKQFVEFP  147 (149)
Q Consensus       137 -~~~l~~~l~~~  147 (149)
                       ...|+.++++.
T Consensus       533 ~~~~i~~~l~~~  544 (1032)
T KOG1178|consen  533 LIRDIRNYLKKE  544 (1032)
T ss_pred             hHHHHHHhhccc
Confidence             46677777654

>KOG3628|consensus

Probab=97.40  E-value=0.0013  Score=56.85  Aligned_cols=88  Identities=15%  Similarity=0.266  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC------------CCCeEEcCceEEEcCCCeEEEE
Q psy4966          25 HNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD------------DDGWLHTGDLAYRLPDGTHFII   91 (149)
Q Consensus        25 ~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~------------~~~~~~TGD~~~~~~~G~~~i~   91 (149)
                      ++.+.+++++..+.|.++++|||||.++. ...||.-+..|+..|.            ...|.|||=+|++. .|.++|+
T Consensus       511 ~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl  589 (1363)
T KOG3628|consen  511 DATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVL  589 (1363)
T ss_pred             ceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEE
Confidence            57778888788889999999999999999 9999988888877773            12389999999996 5566665


Q ss_pred             -------------------------ChHHHHHHHhcCCCcccEEEEe
Q psy4966          92 -------------------------SPCELESIFRQHPDVEDVAVIG  113 (149)
Q Consensus        92 -------------------------~~~eIE~~l~~~~~V~~~~v~~  113 (149)
                                               .-+-|+.+.+..+.|-+++++-
T Consensus       590 ~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~  636 (1363)
T KOG3628|consen  590 GLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE  636 (1363)
T ss_pred             EechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee
Confidence                                     2334555666677888888874

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=95.14  E-value=0.064  Score=33.56  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=32.0

Q ss_pred             ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      +|.+||++|.++|++...+.+.+......+.+...|.+.++..
T Consensus         5 fP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~   47 (96)
T PF14535_consen    5 FPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS   47 (96)
T ss_dssp             -HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC
T ss_pred             CHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC
Confidence            7999999999999998566555554444577778888887543

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=94.84  E-value=0.26  Score=38.51  Aligned_cols=70  Identities=26%  Similarity=0.302  Sum_probs=45.3

Q ss_pred             eeeeccCCcccccccC-cCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceE
Q psy4966           2 FLVVGLVGKSKQKATL-TGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLA   80 (149)
Q Consensus         2 ~~~~g~~e~~~~~~~~-~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~   80 (149)
                      +-.|||+|-....... -+..+.|.- +.++||.+..++|.|++|-|.+-++....|             .+...|.|+|
T Consensus       261 ~~~ygmtEl~s~~~~~~~~~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~s~-------------p~~IlTeDlG  326 (365)
T PF04443_consen  261 YDMYGMTELNSQAYECGHGHFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANTSY-------------PGFILTEDLG  326 (365)
T ss_pred             eeeeeccccchhheeCCCCcccCCCe-EEEECCCCCcCCCCCCeeEEEEEcccccCC-------------CcEEEEccee
Confidence            4578888854322111 121133322 778899889999999999999976652222             2446799999


Q ss_pred             EEcCC
Q psy4966          81 YRLPD   85 (149)
Q Consensus        81 ~~~~~   85 (149)
                      .+..+
T Consensus       327 vl~~~  331 (365)
T PF04443_consen  327 VLHGD  331 (365)
T ss_pred             eecCC
Confidence            87544

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		5e-22
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-21
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-21
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-21
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-21
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-21
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-21
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		4e-20
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-19
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-18
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		4e-14
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		3e-11
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-10
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-10
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-10
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		2e-10
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		4e-10
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		4e-10
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		4e-10
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		5e-10
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		6e-10
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-09
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-09
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-09
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-09
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		4e-08
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		4e-07
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		9e-06
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		1e-05
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		6e-05
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-04
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-04
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		4e-04
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		4e-04

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 27  AIKIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           + KI+D  T   L   + GELC+KG + + GY N  EAT  ++D DGWLH+GD+AY   D
Sbjct: 405 SAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKD 464
Query: 86  GTHFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
           G  FI+               P ELESI  QHP + D  V GIP    GELPAAVVV + 
Sbjct: 465 GYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEE 524
Query: 132 NSSVTAEEVKQFV 144
             ++T +EV  +V
Sbjct: 525 GKTMTEQEVMDYV 537

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K+ID  T   L   + GE+C+KG + + GY N  EATKE++D++GWLHTGD+ Y   +  
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 88  HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+               P ELES+  QHP + D  V G+P  V GELP AVVV +   
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 134 SVTAEEVKQFV 144
           ++T +EV  +V
Sbjct: 494 NMTEKEVMDYV 504

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K+ID  T   L   + GE+C+KG + + GY N  EATKE++D++GWLHTGD+ Y   +  
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 88  HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+               P ELES+  QHP + D  V G+P  V GELP AVVV +   
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 134 SVTAEEVKQFV 144
           ++T +EV  +V
Sbjct: 494 NMTEKEVMDYV 504

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K+ID  T   L   + GE+C+KG + + GY N  EATKE++D++GWLHTGD+ Y   +  
Sbjct: 374 KVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKH 433
Query: 88  HFIIS--------------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+               P ELES+  QHP + D  V G+P  V GELP AVVV +   
Sbjct: 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK 493
Query: 134 SVTAEEVKQFV 144
           ++T +EV  +V
Sbjct: 494 NMTEKEVMDYV 504

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 15/131 (11%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K++D  T   L   + GELC++G + + GY N  EAT  ++D DGWLH+GD+AY   D  
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 431
Query: 88  HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+              +P ELESI  QHP++ D  V G+P D  GELPAAVVV +   
Sbjct: 432 FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491
Query: 134 SVTAEEVKQFV 144
           ++T +E+  +V
Sbjct: 492 TMTEKEIVDYV 502

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 15/131 (11%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K++D  T   L   + GELC++G + + GY N  EAT  ++D DGWLH+GD+AY   D  
Sbjct: 377 KVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 436
Query: 88  HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+              +P ELESI  QHP++ D  V G+P D  GELPAAVVV +   
Sbjct: 437 FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 496
Query: 134 SVTAEEVKQFV 144
           ++T +E+  +V
Sbjct: 497 TMTEKEIVDYV 507

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 15/131 (11%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K++D  T   L   + GELC++G + + GY N  EAT  ++D DGWLH+GD+AY   D  
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 431
Query: 88  HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+              +P ELESI  QHP++ D  V G+P D  GELPAAVVV +   
Sbjct: 432 FFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 491
Query: 134 SVTAEEVKQFV 144
           ++T +E+  +V
Sbjct: 492 TMTEKEIVDYV 502

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           K++D  T   L   + GEL ++G + + GY N  EAT  ++D DGWLH+GD+AY   D  
Sbjct: 377 KVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH 436
Query: 88  HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI+              +P ELESI  QHP++ D  V G+P D  GELPAAVVV +   
Sbjct: 437 FFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK 496
Query: 134 SVTAEEVKQFV 144
           ++T +E+  +V
Sbjct: 497 TMTEKEIVDYV 507

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 15/132 (11%)
Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTG--------- 77
           +KI+DP T   LP  + GE+C++GD +  GY N  EAT   +D +GWLHTG         
Sbjct: 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425
Query: 78  -----DLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
                D    L     F ++P ELE++   HP++ D AV+G+  +  GE+P A VV    
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK 485
Query: 133 SSVTAEEVKQFV 144
           S  T +E+KQ++
Sbjct: 486 SQATEDEIKQYI 497

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG--------- 77
           +KI+DP T   L   + GE+C++G  +  GY N   AT E +D DGWLHTG         
Sbjct: 413 MKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDD 472
Query: 78  -----DLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
                D    L     F ++P ELE++   HPD+ DVAV+ +  +  GE+P A VV   +
Sbjct: 473 ELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD 532
Query: 133 SSVTAEEVKQFVE 145
           S ++ ++VKQFV 
Sbjct: 533 SELSEDDVKQFVS 545

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 39  LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
           LP G+ GE+ L+G  VF GY N   AT+    + GW HTGD+     DG  F        
Sbjct: 342 LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDMGRFDADGYLFYAGRAPEK 400
Query: 91  ---------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVK 141
                    + P E+E   +QHP + D  VIG+P   + E   AV V KP  S+ A+ + 
Sbjct: 401 ELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALA 460
Query: 142 QFV 144
           +FV
Sbjct: 461 EFV 463

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 27  AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA----- 80
           + ++ DP T  +LP G  G + +KG +VF GY    E TK    DDG+  TGDL      
Sbjct: 330 SARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDER 389
Query: 81  ---YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
              + L  G   +I+      P E+ES     P V + AVIG+PH  FGE   AVVV   
Sbjct: 390 GYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDK 449
Query: 132 NSSVTAEEV 140
            +++   +V
Sbjct: 450 GATIDEAQV 458

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA------- 80
           ++ DP T  +LP G  G + + G +VF GY    E T     DDG+  TGDL        
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 81  -YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            + L  G   +I+      P E+ES     P V + AVIG+PH  FGE   AVVV    +
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGA 451
Query: 134 SVTAEEV 140
           ++   +V
Sbjct: 452 TIDEAQV 458

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA------- 80
           ++ DP T  +LP G  G + + G +VF GY    E T     DDG+  TGDL        
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 81  -YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN- 132
            + L  G   +I+      P E+ES     P V + AVIG+PH  FGE   A VV     
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREF 451
Query: 133 --SSVTAEEVKQFV 144
             S + AEE+  FV
Sbjct: 452 APSEILAEELXAFV 465

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 17/114 (14%)
Query: 45  GELCLKGDVFLG-YRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------------- 90
           GE+ +K D+ L  Y N+ EAT++  D+ GW  TGD+     +G  +I             
Sbjct: 363 GEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGE 421
Query: 91  -ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQF 143
            + P E+ES+    P V +VAVIG+P + +GE+ AA+VV   N  V+ +++ ++
Sbjct: 422 NVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEY 474

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22  FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
           F E   ++I   V  + + +G+ GEL +      F+GY N+ EAT E L D GW  T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPEATAEKLQD-GWYRTSDV 386
Query: 80  AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
           A   P+GT  I              I P E+E +    P V +V VIG+    +G+   A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
            VVP+   +++A+ +  F
Sbjct: 447 CVVPRLGETLSADALDTF 464

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22  FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
           F E   ++I   V  + + +G+ GEL +      F+GY N+ +AT E L D GW  T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80  AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
           A   P+GT  I              I P E+E +    P V +V VIG+    +G+   A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
            VVP+   +++A+ +  F
Sbjct: 447 CVVPRLGETLSADALDTF 464

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22  FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
           F E   ++I   V  + + +G+ GEL +      F+GY N+ +AT E L D GW  T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80  AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
           A   P+GT  I              I P E+E +    P V +V VIG+    +G+   A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
            VVP+   +++A+ +  F
Sbjct: 447 CVVPRLGETLSADALDTF 464

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22  FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
           F E   ++I   V  + + +G+ GEL +      F+GY N+ +AT E L D GW  T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80  AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
           A   P+GT  I              I P E+E +    P V +V VIG+    +G+   A
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
            VVP+   +++A+ +  F
Sbjct: 447 CVVPRLGETLSADALDTF 464

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22  FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
           F E   ++I   V  + + +G+ GEL +      F+GY N+ +AT E L D GW  T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80  AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
           A   P+GT  I              I P E+E +    P V +V VIG+    +G+   A
Sbjct: 387 AVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
            VVP+   +++A+ +  F
Sbjct: 447 CVVPRLGETLSADALDTF 464

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 22  FQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--VFLGYRNKVEATKEMLDDDGWLHTGDL 79
           F E   ++I   V  + + +G+ GEL +      F+GY N+ +AT E L D GW  T D+
Sbjct: 329 FSEVRIVRIGGGVDEI-VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDV 386
Query: 80  AYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
           A   P+GT  I              I P E+E +    P V +V VIG+    +G+   A
Sbjct: 387 AVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 126 VVVPKPNSSVTAEEVKQF 143
            VVP+   +++A+ +  F
Sbjct: 447 CVVPRLGETLSADALDTF 464

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 12  KQKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDD 70
           +Q  T  G+     + IKI+D     ++P+G+ G L  +G   F GY    E   ++ D+
Sbjct: 356 EQIFTTQGRPISSDDEIKIVDEQYR-EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDE 414
Query: 71  DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 116
           D + ++GDL  R PDG   +              I+  E+E +   HP+V   A++ I  
Sbjct: 415 DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVD 474
Query: 117 DVFGELPAAVVVPK 130
           + FGE   A +V +
Sbjct: 475 EQFGEKSCAFIVSR 488

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 21/138 (15%)
Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKE------------------ML 68
           +K+I      +L  G++GE+ ++G ++F GY  + +  +E                   +
Sbjct: 367 LKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426
Query: 69  DDDGWLHTGDLAYRLPDGTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
           D++G+LH  D    +     + I+P ELE++  +H  V DVAVIG P +  GE+P A +V
Sbjct: 427 DEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIV 486
Query: 129 PKP--NSSVTAEEVKQFV 144
            KP     V  E++ ++V
Sbjct: 487 LKPEYRGKVDEEDIIEWV 504

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 29  KIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLA------- 80
           ++ DP T  +LP G  G + + G +VF GY    E T     DDG+  TGDL        
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 81  -YRLPDGTHFIIS------PCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
            + L  G   +I+      P E+ES     P V + AVIG+PH  FGE   A VV
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVV 446

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 19/119 (15%)
Query: 41  DGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAY-----------RLPD-- 85
           DGK  GE+ LKG  +  GY    EAT+  L  DG+  TGD+A            RL D  
Sbjct: 379 DGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLI 438
Query: 86  --GTHFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQ 142
             G  +I S  +LE+    HP V++ AV+ IPH  + E P AVVVP+     T EE+ +
Sbjct: 439 KSGGEWI-SSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPTPEELNE 495

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 39  LPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------- 90
           +PDG+ G+L +KG    + Y N  E ++     + W+ +GD   RLP+G +         
Sbjct: 373 VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDM 431
Query: 91  -------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK--PNSSVTAEEVK 141
                  +SP E+E +  QH  V + AV+G+ H    +  A VV+ +    S + AEE+K
Sbjct: 432 LKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELK 491
Query: 142 QFVE 145
            FV+
Sbjct: 492 AFVK 495

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 35  TSVQLPDGKT-GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG------ 86
           T +   DG++ GE+ ++G ++F  Y N+ +AT     +DG+  TGD+A R PDG      
Sbjct: 343 TPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG 402
Query: 87  ---THFI------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
              T  I      I   E+E+   +HP+V + AV G P    GE   A +V
Sbjct: 403 RKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIV 453

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 53  VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG--------------THFIISPCELES 98
           +F+ Y    E T+E   D G+ HTGD+A+   DG              + + + P E+ES
Sbjct: 434 LFVHYGKDPERTEETWHD-GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVES 492
Query: 99  IFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
              QHP V + A+ G+P  V G++  A +V
Sbjct: 493 ALIQHPAVLECAITGVPDPVRGQVIKATIV 522

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 24/136 (17%)
Query: 27  AIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGW------LHTGDL 79
           ++ I++  + +Q P G  GELC+ G  V  GY N+ + TKE   ++ +        TGDL
Sbjct: 787 SVYILNEQSQLQ-PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDL 845
Query: 80  AYRLPDGT--------------HFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAA 125
           A  LPDGT                 I   E+E   +++P V+D  V+   H+       A
Sbjct: 846 ARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINA 905
Query: 126 VVVPKPNSSVTAEEVK 141
            +V +  + ++AE+VK
Sbjct: 906 YLVNR--TQLSAEDVK 919

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 42  GKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI---------- 90
           G+TG L  +G   + GY    E       +DG+  TGD+     DG   +          
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR 435
Query: 91  ----ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
               ++  E+E+    HP V D A++ +P    GE     ++P+ + +  A E+K F+ 
Sbjct: 436 GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR-DEAPKAAELKAFLR 493

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 45  GELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI------------- 90
           GEL +KG +V  GY    + T     ++G+ +TGD+A    +G   I             
Sbjct: 349 GELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGE 406
Query: 91  -ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134
            I P ++E++ +Q P + D   +G P D +G++P    V + + S
Sbjct: 407 NIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDIS 451

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 42  GKTGELCLKGDVFL-GYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFI---------- 90
           G+TG L  +G   + GY    E       +DG+  TGD+     DG   +          
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR 435
Query: 91  ----ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVE 145
               ++  E+E+    HP V D A +  P    GE     ++P+ + +  A E+K F+ 
Sbjct: 436 GGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPR-DEAPKAAELKAFLR 493

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
           ++IID   +V LP G  G++ ++        +F GY +  + T   +  D WL  GD   
Sbjct: 385 VQIIDDKGNV-LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGI 442
Query: 82  RLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
           +  DG              + + I P E+E+   +HP V + AVI  P  V GE+  A V
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFV 502
Query: 128 V 128
           V
Sbjct: 503 V 503

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
           ++IID   +V LP G  G++ ++        +F GY +  + T   +  D WL  GD   
Sbjct: 385 VQIIDDKGNV-LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGI 442
Query: 82  RLPDG--------------THFIISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
           +  DG              + + I P E+E+   +HP V + AVI  P  V GE+  A V
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFV 502
Query: 128 V 128
           V
Sbjct: 503 V 503

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-48
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	9e-48
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-47
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-47
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-42
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-41
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-39
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-38
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	4e-38
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-38
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	9e-38
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-37
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-35
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-34
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-31
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-29
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-23
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-21
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-15
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-15
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	7e-13
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-08
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-08
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	5e-08
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	1e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-07
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	6e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-06
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-06
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	8e-04

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  161 bits (410), Expect = 3e-48
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 15/133 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           +KI+DP T   LP  + GE+C++GD +  GY N  EAT   +D +GWLHTGD+ Y   D 
Sbjct: 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI              ++P ELE++   HP++ D AV+G+  +  GE+P A VV    
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK 485

Query: 133 SSVTAEEVKQFVE 145
           S  T +E+KQ++ 
Sbjct: 486 SQATEDEIKQYIS 498

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  160 bits (408), Expect = 9e-48
 Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 15/133 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            K+ID  T   L   + GE+C+KG  +  GY N  EATKE++D++GWLHTGD+ Y   + 
Sbjct: 373 AKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI              + P ELES+  QHP + D  V G+P  V GELP AVVV +  
Sbjct: 433 HFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG 492

Query: 133 SSVTAEEVKQFVE 145
            ++T +EV  +V 
Sbjct: 493 KNMTEKEVMDYVA 505

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  160 bits (407), Expect = 1e-47
 Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 15/133 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            K++D  T   L   + GELC++G  +  GY N  EAT  ++D DGWLH+GD+AY   D 
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI              ++P ELESI  QHP++ D  V G+P D  GELPAAVVV +  
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490

Query: 133 SSVTAEEVKQFVE 145
            ++T +E+  +V 
Sbjct: 491 KTMTEKEIVDYVA 503

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  162 bits (413), Expect = 2e-47
 Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 15/132 (11%)

Query: 29  KIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGT 87
           KI+DP T   L   + GE+C++G  +  GY N   AT E +D DGWLHTGD+     D  
Sbjct: 414 KIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDE 473

Query: 88  HFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS 133
            FI              ++P ELE++   HPD+ DVAV+ +  +  GE+P A VV   +S
Sbjct: 474 LFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS 533

Query: 134 SVTAEEVKQFVE 145
            ++ ++VKQFV 
Sbjct: 534 ELSEDDVKQFVS 545

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  145 bits (369), Expect = 2e-42
 Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            ++ DP T  +LP G  G + +KG  VF GY    E TK    DDG+  TGDL      G
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERG 390

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
              I              + P E+ES     P V + AVIG+PH  FGE   AVVV    
Sbjct: 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG 450

Query: 133 SSVTAEEVKQFV 144
           +++   +V   +
Sbjct: 451 ATIDEAQVLHGL 462

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  143 bits (362), Expect = 3e-41
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML----DDDGWLHTGDLAYR 82
           +K+I      +L  G++GE+ ++G  +F GY  + +  +E          +  TGD+ + 
Sbjct: 367 LKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426

Query: 83  LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
             +G                  I+P ELE++  +H  V DVAVIG P +  GE+P A +V
Sbjct: 427 DEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIV 486

Query: 129 PKPN--SSVTAEEVKQFV 144
            KP     V  E++ ++V
Sbjct: 487 LKPEYRGKVDEEDIIEWV 504

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  137 bits (348), Expect = 2e-39
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 19/138 (13%)

Query: 25  HNAIKIIDPVTSVQ--LPDGKTGELCLKG--DVFLGYRNKVEATKEMLDDDGWLHTGDLA 80
            + ++I+     V   + +G+ GEL +      F+GY N+ +AT E L D GW  T D+A
Sbjct: 329 FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYRTSDVA 387

Query: 81  YRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV 126
              P+GT  I              I P E+E +    P V +V VIG+    +G+   A 
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447

Query: 127 VVPKPNSSVTAEEVKQFV 144
           VVP+   +++A+ +  F 
Sbjct: 448 VVPRLGETLSADALDTFC 465

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  135 bits (342), Expect = 2e-38
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 19  GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG 77
           G+     + IKI+D      +P+G+ G L  +G   F GY    E   ++ D+D + ++G
Sbjct: 363 GRPISSDDEIKIVDEQYRE-VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421

Query: 78  DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
           DL  R PDG   +              I+  E+E +   HP+V   A++ I  + FGE  
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKS 481

Query: 124 AAVVVPKPNSSVTAEEVKQFVE 145
            A +V +          +  +E
Sbjct: 482 CAFIVSRNPELKAVVLRRHLME 503

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  134 bits (339), Expect = 4e-38
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 19/137 (13%)

Query: 25  HNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
              + ++D      LP G+ GE+ L+G  VF GY N   AT+    + GW HTGD+    
Sbjct: 329 WRTVAVVDAEDR-PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDMGRFD 386

Query: 84  PDGTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
            DG  F                 + P E+E   +QHP + D  VIG+P   + E   AV 
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVC 446

Query: 128 VPKPNSSVTAEEVKQFV 144
           V KP  S+ A+ + +FV
Sbjct: 447 VCKPGESIAADALAEFV 463

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  134 bits (339), Expect = 4e-38
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 19/136 (13%)

Query: 28  IKIIDPVTS--VQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP 84
           +++++   +    L     GE+ ++G  +F  Y N+ +AT     +DG+  TGD+A R P
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394

Query: 85  DGTHFI---------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
           DG   I               I   E+E+   +HP+V + AV G P    GE   A +VP
Sbjct: 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVP 454

Query: 130 -KPNSSVTAEEVKQFV 144
             P +      +   V
Sbjct: 455 ADPAAPPALGTLADHV 470

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  133 bits (337), Expect = 9e-38
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 19  GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG 77
           GK    ++  ++ D      +  G+TG L  +G     GY    E       +DG+  TG
Sbjct: 354 GKPMSPYDESRVWDDHDRD-VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG 412

Query: 78  DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
           D+     DG   +              ++  E+E+    HP V D A++ +P    GE  
Sbjct: 413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472

Query: 124 AAVVVPKPNSSVTAEEVKQF 143
              ++P+   +  A E+K F
Sbjct: 473 CVFIIPRDE-APKAAELKAF 491

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  132 bits (335), Expect = 4e-37
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 19  GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTG 77
           G      + + + D      LP G+ G L  +G   F GY    +      D +G+  +G
Sbjct: 358 GYPMCPDDEVWVADA-EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 416

Query: 78  DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
           DL    P+G   +              I+  E+E++  +HP V   A++ +  ++ GE  
Sbjct: 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476

Query: 124 AAVVVPKPNSSVTAEEVKQF 143
            A +V K    + A +V++F
Sbjct: 477 CAYLVVKE--PLRAVQVRRF 494

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  127 bits (321), Expect = 2e-35
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 19/135 (14%)

Query: 25  HNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
              + +      V    G  GE+ +K D +   Y N+ EAT++  D+ GW  TGD+    
Sbjct: 345 FTDVAVRGD-DGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEID 401

Query: 84  PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
            +G  +I              + P E+ES+    P V +VAVIG+P + +GE+ AA+VV 
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461

Query: 130 KPNSSVTAEEVKQFV 144
              + V+ +++ ++ 
Sbjct: 462 DQ-NEVSEQQIVEYC 475

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  124 bits (313), Expect = 2e-34
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 25/135 (18%)

Query: 25  HNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRL 83
           +  +KI +P           GEL +KG  V  GY    + T     ++G+ +TGD+A   
Sbjct: 335 NVDVKIKNP------NKEGHGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEID 386

Query: 84  PDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
            +G   I              I P ++E++ +Q P + D   +G P D +G++P    V 
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446

Query: 130 KPNSSVTAEEVKQFV 144
           +    ++  ++  ++
Sbjct: 447 ES--DISKAQLIAYL 459

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  114 bits (289), Expect = 6e-31
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 20/136 (14%)

Query: 28  IKIIDPVTSVQLPDGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           +++ D        DGK  GE+ LKG  +  GY    EAT+  L  DG+  TGD+A    +
Sbjct: 366 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425

Query: 86  GTHFI----------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP 129
           G  ++                IS  +LE+    HP V++ AV+ IPH  + E P AVVVP
Sbjct: 426 G--YVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVP 483

Query: 130 KPNSSVTAEEVKQFVE 145
           +       E  +  ++
Sbjct: 484 RGEKPTPEELNEHLLK 499

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  110 bits (277), Expect = 3e-29
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 21/135 (15%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKG-DVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
           I++ D      +PDG+ G+L +KG    + Y N  E ++       W+ +GD   RLP+G
Sbjct: 363 IELRDE-AGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLG-EWIRSGDKYCRLPNG 420

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
            +                +SP E+E +  QH  V + AV+G+ H        A VV K  
Sbjct: 421 CYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKRE 479

Query: 133 ---SSVTAEEVKQFV 144
              S + AEE+K FV
Sbjct: 480 FAPSEILAEELKAFV 494

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 34/154 (22%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
           ++IID   +V LP G  G++ ++        +F GY +  + T   +    +   GD   
Sbjct: 385 VQIIDDKGNV-LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRG-DFWLLGDRGI 442

Query: 82  RLPDGT-HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
           +  DG   F+             I P E+E+   +HP V + AVI  P  V GE+  A V
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFV 502

Query: 128 VPKP-----NSSVTAEEVKQFV-------EFPRK 149
           V        +     +E++Q V       ++PRK
Sbjct: 503 VLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRK 536

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 88.0 bits (219), Expect = 2e-21
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 32/152 (21%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD------VFLGYRNKVEATKEMLDDDGWLHTGDLAY 81
           I+++D    +    G+ GE+ +         +F+ Y    E T+E   D G+ HTGD+A+
Sbjct: 404 IELMDRDGRL-CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD-GYYHTGDMAW 461

Query: 82  RLPDG-THFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
              DG   F+             + P E+ES   QHP V + A+ G+P  V G++  A +
Sbjct: 462 MDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATI 521

Query: 128 VPKPN---SSVTAEEVKQFV-------EFPRK 149
           V   +   S     E++  V       ++PR 
Sbjct: 522 VLTKDYTPSDSLKNELQDHVKNVTAPYKYPRI 553

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 27/138 (19%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML--------DDDGWLHTGD 78
           +KIIDP T +     + GE+ ++ + V  GY N+ E T+               +L TGD
Sbjct: 383 VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGD 442

Query: 79  LAYRLPDGTHFI--------------ISPCELE-SIFRQHPDVE--DVAVIGIPHDVFGE 121
           L + L +   ++                P ++E S+            A   I  +   +
Sbjct: 443 LGF-LHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYK 501

Query: 122 LPAAVVVPKPNSSVTAEE 139
           L     V        A++
Sbjct: 502 LTVMCEVKNRFMDDVAQD 519

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 63.6 bits (155), Expect = 7e-13
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEML-----------DDDGWLH 75
           ++I+D  T ++ PDG  GE+ + GD V  GY  K + ++               +  WL 
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463

Query: 76  TGDLAYRLPDG 86
           TGD  + + DG
Sbjct: 464 TGDSGF-VTDG 473

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 52.5 bits (127), Expect = 5e-09
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 21/127 (16%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEM-LDDDG-WL-HTGDLAYRLPDGT-HFI--- 90
           L  G+ GE+ + G  V  GY N  E T E      G    HTGD+     D    +    
Sbjct: 343 LSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL 402

Query: 91  ----------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP--AAVVVPKPNSSVTAE 138
                     I   ++     Q P V     +   ++   ++    A +V K       +
Sbjct: 403 DFQIKYAGYRIELEDVSQQLNQSPMVASAVAV-PRYNKEHKVQNLLAYIVVKDGVKERFD 461

Query: 139 EVKQFVE 145
              +  +
Sbjct: 462 RELELTK 468

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 40  PDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLH-TGDLAYRLPDGT-HFI------ 90
             G  GEL ++G  V  GY N+ +A      +   ++ TGD+     D +  F+      
Sbjct: 370 KKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQ 429

Query: 91  -------ISPCELESIFRQHPDVEDVAVI 112
                  +   E+  + R     +   V 
Sbjct: 430 VKVRGQRLELGEVSEVIRSLSPTDIDVVT 458

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 27/130 (20%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEM-----LDDDGWL-HTGDLAYRLPDGT---- 87
              G+ GELC+ G+ +  GY  + E T +            L  TGD A  L DG     
Sbjct: 367 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 426

Query: 88  ----H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNSSV 135
               +        +   E+ESI  +H  + + AV     D   +  L A  V       +
Sbjct: 427 GRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK-DHQEQPYLCAYFV---SEKHI 482

Query: 136 TAEEVKQFVE 145
             E+++QF  
Sbjct: 483 PLEQLRQFSS 492

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 27/129 (20%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLH------TGDLAYRLPDGT-HFI 90
            P G  GELC+ G  V  GY N+ + TKE   ++ +        TGDLA  LPDGT  + 
Sbjct: 798 QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYA 857

Query: 91  -------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNSSV 135
                        I   E+E   +++P V+D  V+       G+  + A +V     + +
Sbjct: 858 GRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVV-ADRHESGDASINAYLV---NRTQL 913

Query: 136 TAEEVKQFV 144
           +AE+VK  +
Sbjct: 914 SAEDVKAHL 922

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 14/93 (15%)

Query: 71  DGWLHTGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPH 116
                +GD A R  DG ++I              +   E+ES    HP + + AV+GIPH
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552

Query: 117 DVFGELPAAVVVPKPNSSVTAEEVKQFVEFPRK 149
            + G+   A V        + E   +   + RK
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRK 585

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 30/130 (23%)

Query: 37  VQLPDGKTGELCLKGD-VFLGYRNKVEATKE------MLDDDGWLH-TGDLAYRLPDGT- 87
           +  P  + GE+   G  +  GYRN    T+               + TGD A     G  
Sbjct: 354 IAEP-DRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRL 412

Query: 88  HFI-------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS 134
            FI             +    LE  FR+ P + D A++    +   +L  A         
Sbjct: 413 RFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGK----- 467

Query: 135 VTAEEVKQFV 144
             A+   Q +
Sbjct: 468 --ADASPQAL 475

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)

Query: 76  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
           TGD A +  DG  +I              +S  E+E+   + P V + AV+G   D+ G+
Sbjct: 507 TGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQ 566

Query: 122 LPAAVVVPKPNSSVTAEEVKQFVE 145
             AA VV K  SS +     +  +
Sbjct: 567 AVAAFVVLKNKSSWSTATDDELQD 590

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 27/130 (20%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKE--MLDDDGWLH-TGDLAYRLPDGT------- 87
            PDG+ GE+ + G  V +GY    E T++   + D    + TGD  Y + +G        
Sbjct: 340 APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGY-VENGLLFYNGRL 398

Query: 88  -H------FIISPCELESIFRQHPDVEDVAVIGIPHDVFGE--LPAAVVVPKPNSSV--- 135
                   + +   E+E   R    VE   ++ I         L  AVVVP  +S     
Sbjct: 399 DFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPI-KKGEKYDYL-LAVVVPGEHSFEKEF 456

Query: 136 -TAEEVKQFV 144
                +K+ +
Sbjct: 457 KLTSAIKKEL 466

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 19/92 (20%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKE--MLDDDGWL-HTGDLAYRLPDGT------- 87
           LP+G+ GE+ + G  V  GY  + E T++     +  W   TGD  + + DG        
Sbjct: 339 LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGF-IQDGQIFCQGRL 397

Query: 88  -H------FIISPCELESIFRQHPDVEDVAVI 112
                   + +   E+E   RQ   V    VI
Sbjct: 398 DFQIKLHGYRMELEEIEFHVRQSQYVRSAVVI 429

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 21  HFQEHNAIKIIDPVTSVQLPDGKTGELC---LKGDVFL-GYRNKVEATKEMLDDDGWLHT 76
            F       ++D +T+  +  G+ G +    L    F      +  A +      G+   
Sbjct: 290 SFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRL-PGVSGFAGD 348

Query: 77  G 77
            
Sbjct: 349 R 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.98
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.97
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.97
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.97
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.97
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.97
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.97
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.97
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.96
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.96
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.96
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.96
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.96
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.96
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.96
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.96
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.96
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.96
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.96
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.96
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.96
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.95
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.95
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.95
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.94
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.94
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.94
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.94
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.93
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.84
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.83
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.82
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.81
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.68
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	98.59
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.53
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.11
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	90.36
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	90.24
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	82.64

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=6.7e-32  Score=215.06  Aligned_cols=147  Identities=37%  Similarity=0.679  Sum_probs=135.3

Q ss_pred             CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++..              ..+++|+ |+++++++|+|+++++++|+|+.|||+++|+. +.|||++|+.|.
T Consensus       326 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~  404 (536)
T 3ni2_A          326 LGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATS  404 (536)
T ss_dssp             EEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHH
T ss_pred             ccccccccccchhhhcccccCCccccCCCCCeeE-eCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHH
Confidence            3578999998732              3456788 99999999999888999999999999999999 999999999999


Q ss_pred             cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      ..|..++||+|||+|++|+||+++|+              +|.|||++|.+||+|.+++|++++++.+|+.++|+|+..+
T Consensus       405 ~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~  484 (536)
T 3ni2_A          405 RTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSE  484 (536)
T ss_dssp             HHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred             hhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecC
Confidence            99988999999999999999999997              9999999999999999999999999999999999999998


Q ss_pred             CCCCCHHHHHHHhhccc
Q psy4966         132 NSSVTAEEVKQFVEFPR  148 (149)
Q Consensus       132 ~~~~~~~~l~~~l~~~~  148 (149)
                      +...+.++|+++|++..
T Consensus       485 ~~~~~~~~l~~~l~~~l  501 (536)
T 3ni2_A          485 KSQATEDEIKQYISKQV  501 (536)
T ss_dssp             TCCCCHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            88889999999998753

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.98  E-value=9.3e-32  Score=212.92  Aligned_cols=147  Identities=31%  Similarity=0.431  Sum_probs=134.8

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||++..         ...++|+ |+|+++++|+|+++|+++|+|+.|||+|+|+. +.|||++|+.|...|..
T Consensus       296 ~~~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~  374 (503)
T 4fuq_A          296 VLERYGMTETNMNTSNPYDGDRVPGAVGP-ALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRD  374 (503)
T ss_dssp             EEECCEETTTEECBCCCSSSCCCTTEEEE-BCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCT
T ss_pred             ccceEcccccCcccccCCCCCCcCCcccc-CCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCC
Confidence            3678999998642         2345788 99999999999888999999999999999999 99999999999999988


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      ++||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|++++++.+|+.++++|+..++...+
T Consensus       375 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~  454 (503)
T 4fuq_A          375 DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATID  454 (503)
T ss_dssp             TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred             CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCC
Confidence            999999999999999999996              999999999999999999999999999999999999999888889


Q ss_pred             HHHHHHHhhccc
Q psy4966         137 AEEVKQFVEFPR  148 (149)
Q Consensus       137 ~~~l~~~l~~~~  148 (149)
                      .++++++|++..
T Consensus       455 ~~~l~~~l~~~L  466 (503)
T 4fuq_A          455 EAQVLHGLDGQL  466 (503)
T ss_dssp             HHHHHHHHBTTB
T ss_pred             HHHHHHHHHhhc
Confidence            999999988753

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.97  E-value=4.2e-31  Score=211.15  Aligned_cols=146  Identities=40%  Similarity=0.662  Sum_probs=133.9

Q ss_pred             CeeeeccCCcccc---------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSKQ---------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~~---------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||++..         ...++|+ |+|+++++|+|+++++++++|+.|||+++|+. +.|||++++.|+..|..
T Consensus       338 i~~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~  416 (548)
T 2d1s_A          338 VRQGYGLTETTSAIIITPEGDDKPGASGK-VVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE  416 (548)
T ss_dssp             CEEEEECGGGSSEEEECCTTCCCTTCCBE-ECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred             eeeccccccccceeeecCcccCCCCCCCc-cCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccC
Confidence            4688999998642         3356788 99999999999878999999999999999999 99999999999999977


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      ++||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.++...+
T Consensus       417 ~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~  496 (548)
T 2d1s_A          417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT  496 (548)
T ss_dssp             TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred             CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC
Confidence            999999999999999999997              999999999999999999999999999999999999998877788


Q ss_pred             HHHHHHHhhcc
Q psy4966         137 AEEVKQFVEFP  147 (149)
Q Consensus       137 ~~~l~~~l~~~  147 (149)
                      .++|+++|++.
T Consensus       497 ~~~l~~~~~~~  507 (548)
T 2d1s_A          497 EKEVMDYVASQ  507 (548)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            89999999865

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.97  E-value=9.1e-31  Score=209.07  Aligned_cols=146  Identities=29%  Similarity=0.487  Sum_probs=125.8

Q ss_pred             eeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC-
Q psy4966           2 FLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-   69 (149)
Q Consensus         2 ~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~-   69 (149)
                      +..||+||++.          ....++|+ |+++++++|+|+++|+++++|+.|||+|+|+. +.|||++++.++..|. 
T Consensus       332 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~  410 (549)
T 3g7s_A          332 NQIWGMTEACPMVTTNPPLRLDKSTTQGV-PMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWY  410 (549)
T ss_dssp             EEEEECGGGSSEEEECCGGGGGGTTSCCE-ECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEE
T ss_pred             cceEeccccchhhhcCCccccCcCCCccc-cCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhc
Confidence            56899999874          23466788 99999999999888999999999999999999 9999999999999883 


Q ss_pred             -CCC--eEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          70 -DDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        70 -~~~--~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                       .+|  ||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.++
T Consensus       411 ~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~  490 (549)
T 3g7s_A          411 DEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPE  490 (549)
T ss_dssp             CTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECST
T ss_pred             cCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCC
Confidence             456  9999999999999999997              99999999999999999999999999999999999999876


Q ss_pred             --CCCCHHHHHHHhhccc
Q psy4966         133 --SSVTAEEVKQFVEFPR  148 (149)
Q Consensus       133 --~~~~~~~l~~~l~~~~  148 (149)
                        ...+.++|+++|++..
T Consensus       491 ~~~~~~~~~l~~~l~~~L  508 (549)
T 3g7s_A          491 YRGKVDEEDIIEWVRERI  508 (549)
T ss_dssp             TTTSCCHHHHHHHHHTTC
T ss_pred             ccCcCCHHHHHHHHHHhc
Confidence              5678899999998753

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.97  E-value=2.3e-30  Score=205.07  Aligned_cols=145  Identities=26%  Similarity=0.419  Sum_probs=126.4

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCC---CCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPD---GKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~---g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++.         ....++|+ |+|+++++|+| ++|++++.   |+.|||+++|+. +.|||++|+.|+..
T Consensus       300 ~~~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~  377 (505)
T 3nyq_A          300 VIERYGMTETLMNTSVRADGEPRAGTVGV-PLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAA  377 (505)
T ss_dssp             CEEEEEETTTEEEEECCTTSCCCTTCCCE-ECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHT
T ss_pred             eecccchhhcccccccCCCCCCCCCCccc-CCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhh
Confidence            468899999863         23456788 99999999999 88888876   899999999999 99999999999999


Q ss_pred             cCCCCeEEcCceEEEcCCCeEEEE---------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC-
Q psy4966          68 LDDDGWLHTGDLAYRLPDGTHFII---------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP-  131 (149)
Q Consensus        68 ~~~~~~~~TGD~~~~~~~G~~~i~---------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~-  131 (149)
                      |..++||+|||+|++|++|+++|+               +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.+ 
T Consensus       378 f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~  457 (505)
T 3nyq_A          378 FTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP  457 (505)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST
T ss_pred             hcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC
Confidence            988999999999999999999997               9999999999999999999999999999999999999875 


Q ss_pred             CCCCCHHHHHHHhhcc
Q psy4966         132 NSSVTAEEVKQFVEFP  147 (149)
Q Consensus       132 ~~~~~~~~l~~~l~~~  147 (149)
                      ....+.++|+++|++.
T Consensus       458 ~~~~~~~~l~~~l~~~  473 (505)
T 3nyq_A          458 AAPPALGTLADHVAAR  473 (505)
T ss_dssp             TSCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            4567788899988764

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.97  E-value=2e-31  Score=212.84  Aligned_cols=146  Identities=40%  Similarity=0.662  Sum_probs=82.1

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||++.         ....++|+ |+|+++++|+|+++++++++|+.|||+|+|+. +.|||++++.|...|..
T Consensus       336 v~~~YG~TE~~~~~~~~~~~~~~~~~vG~-~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~  414 (550)
T 3rix_A          336 IRQGYGLTETTSAILITPEGDDKPGAVGK-VVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDK  414 (550)
T ss_dssp             CEEEEECGGGSSEEEECCTTCCCTTEEEE-ECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred             cccccCcCccccceecCCCCCCCCCCccc-ccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCC
Confidence            367899999874         23466788 99999999999888999999999999999999 99999999999999988


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      +|||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|++++++.+|+.++++|++.++...+
T Consensus       415 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~  494 (550)
T 3rix_A          415 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT  494 (550)
T ss_dssp             TSCEEEEEEEEECTTCCEEEC-----------------------------------------------------------
T ss_pred             CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCC
Confidence            999999999999999999996              999999999999999999999999999999999999998877777


Q ss_pred             HHHHHHHhhcc
Q psy4966         137 AEEVKQFVEFP  147 (149)
Q Consensus       137 ~~~l~~~l~~~  147 (149)
                      .++|+++|++.
T Consensus       495 ~~~l~~~~~~~  505 (550)
T 3rix_A          495 EKEIVDYVASQ  505 (550)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            78888887654

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.97  E-value=6.5e-30  Score=205.64  Aligned_cols=144  Identities=28%  Similarity=0.422  Sum_probs=128.7

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEc-----CC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG-----DV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~-----~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++.         ...+++|+ |+|+++++|+| ++|+++|+|+.|||+++|     +. +.|||++|+.|+
T Consensus       369 i~~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~  446 (580)
T 3etc_A          369 LMEGFGQTETVVTIATFPWMEPKPGSIGK-PTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTE  446 (580)
T ss_dssp             CEEEECCTTSSCCEECCTTSCCCTTCCBE-ECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHH
T ss_pred             EecccccccccceeecCCCCCCCCCcccc-CCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHH
Confidence            468999999864         23467888 99999999999 789999999999999997     66 999999999999


Q ss_pred             cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      +.| .+|||+|||+|++|+||+++|+              +|.|||++|.+||+|.+|+|++++++.+|+.++|+|++.+
T Consensus       447 ~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~  525 (580)
T 3etc_A          447 ETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTK  525 (580)
T ss_dssp             HHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred             hhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECC
Confidence            999 5899999999999999999997              9999999999999999999999999999999999999988


Q ss_pred             CCCCCH---HHHHHHhhcc
Q psy4966         132 NSSVTA---EEVKQFVEFP  147 (149)
Q Consensus       132 ~~~~~~---~~l~~~l~~~  147 (149)
                      +...+.   ++|+++|++.
T Consensus       526 ~~~~~~~~~~~l~~~l~~~  544 (580)
T 3etc_A          526 DYTPSDSLKNELQDHVKNV  544 (580)
T ss_dssp             TCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            765543   5777777654

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.97  E-value=7.3e-30  Score=203.51  Aligned_cols=144  Identities=24%  Similarity=0.413  Sum_probs=128.3

Q ss_pred             CeeeeccCCcccc----------cccCcCccccCC-ceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQEH-NAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~~~-~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||.+..          ...++|+ |+++ .+++|+| ++++++|+|+.|||+++|+. +.|||++|+.|+..|
T Consensus       326 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f  403 (539)
T 1mdb_A          326 LQQVFGMAEGLVNYTRLDDPEEIIVNTQGK-PMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF  403 (539)
T ss_dssp             EEEEEECTTSCEEECCTTSCHHHHHHCCCE-ESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHB
T ss_pred             EEEEEcCCCCcccccCCCCcHHhcCCCCCc-ccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhc
Confidence            3678999996531          1246788 8875 5899999 88999999999999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..++||+|||+|++|+||+++|+              +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.. ..
T Consensus       404 ~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~  482 (539)
T 1mdb_A          404 TEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EA  482 (539)
T ss_dssp             CTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SC
T ss_pred             cCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CC
Confidence            88999999999999999999997              9999999999999999999999999999999999999873 45


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++|+++|++.
T Consensus       483 ~~~~~l~~~l~~~  495 (539)
T 1mdb_A          483 PKAAELKAFLRER  495 (539)
T ss_dssp             CCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhC
Confidence            7788999998764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.97  E-value=2.3e-29  Score=199.11  Aligned_cols=142  Identities=30%  Similarity=0.526  Sum_probs=129.2

Q ss_pred             eeeeccCCccc------ccccCcCccccCCceEEEEcCCCC---ccCCCCCeeEEEEE-cCC-CccccCCchhhhcccCC
Q psy4966           2 FLVVGLVGKSK------QKATLTGKHFQEHNAIKIIDPVTS---VQLPDGKTGELCLK-GDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         2 ~~~~g~~e~~~------~~~~~~g~~p~~~~~~~i~d~~~g---~~~~~g~~Gel~v~-~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      +..||+||+..      ....++|. |+++++++++| +++   +++++|+.|||+++ |+. +.|||++|+.|.+.| .
T Consensus       301 ~~~YG~TE~~~~~~~~~~~~~~~g~-p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~  377 (504)
T 1t5h_X          301 VNIYGTTEAMNSLYMRQPKTGTEMA-PGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-Q  377 (504)
T ss_dssp             EEEEEETTTEEEEEEESCSSSSEEB-CCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-E
T ss_pred             eeeeccccccccccccCCCCCcccc-CCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-c
Confidence            57899999732      23456788 99999999999 666   89999999999999 888 999999999999999 6


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      +|||+|||+|++|+||+++|+              +|.|||++|.+||+|.+|+|++.+++.+|+.++|+|+++++...+
T Consensus       378 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~  457 (504)
T 1t5h_X          378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS  457 (504)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC
T ss_pred             CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC
Confidence            899999999999999999997              999999999999999999999999999999999999998877788


Q ss_pred             HHHHHHHhhc
Q psy4966         137 AEEVKQFVEF  146 (149)
Q Consensus       137 ~~~l~~~l~~  146 (149)
                      .++|+++|++
T Consensus       458 ~~~l~~~~~~  467 (504)
T 1t5h_X          458 ADALDTFCRS  467 (504)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999999986

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.96  E-value=1.4e-29  Score=202.96  Aligned_cols=143  Identities=24%  Similarity=0.277  Sum_probs=126.9

Q ss_pred             CeeeeccCCcccc------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcc
Q psy4966           1 MFLVVGLVGKSKQ------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEM   67 (149)
Q Consensus         1 ~~~~~g~~e~~~~------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~   67 (149)
                      ++..||+||++..            ...++|+ |+|+++++|+| ++++++++|+.|||+++|+. |.|||++|+.|++.
T Consensus       319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~-p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~  396 (563)
T 1amu_A          319 YINAYGPTETTICATTWVATKETIGHSVPIGA-PIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK  396 (563)
T ss_dssp             EEEEECCGGGSSCSEEEECCSSCCCSSCCCBE-ECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHH
T ss_pred             EEEEECcCHHhHhheeeecccccCCCCCcccc-eeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhh
Confidence            3678999998632            2236788 99999999999 88999999999999999999 99999999999998


Q ss_pred             cCC------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEE
Q psy4966          68 LDD------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV  127 (149)
Q Consensus        68 ~~~------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v  127 (149)
                      |..      ++||+|||+|++|+||+++|+              +|.|||++|.+||+|.+++|++.+++.+++.++|++
T Consensus       397 f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~v  476 (563)
T 1amu_A          397 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYF  476 (563)
T ss_dssp             EEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEE
T ss_pred             cccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEE
Confidence            843      359999999999999999997              999999999999999999999999998899999999


Q ss_pred             EeCCCCCCCHHHHHHHhhcc
Q psy4966         128 VPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       128 ~~~~~~~~~~~~l~~~l~~~  147 (149)
                      +...  ..+.++|+++|++.
T Consensus       477 v~~~--~~~~~~l~~~l~~~  494 (563)
T 1amu_A          477 VSEK--HIPLEQLRQFSSEE  494 (563)
T ss_dssp             EESS--CCCHHHHHHHHHHH
T ss_pred             EeCC--CCCHHHHHHHHHhh
Confidence            9764  46788899988764

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.96  E-value=2.4e-30  Score=207.49  Aligned_cols=145  Identities=24%  Similarity=0.239  Sum_probs=78.5

Q ss_pred             CeeeeccCCcccc-------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhc
Q psy4966           1 MFLVVGLVGKSKQ-------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKE   66 (149)
Q Consensus         1 ~~~~~g~~e~~~~-------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~   66 (149)
                      ++..||+||++..             ...++|+ |+++++++|+| ++++++++|+.|||+|+|+. |.|||++++.|++
T Consensus       355 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~  432 (570)
T 4gr5_A          355 LGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV-PLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAE  432 (570)
T ss_dssp             EEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE-ECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHH
T ss_pred             EEEeechhhheeeeeeeeecccccCCCccccce-eeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhc
Confidence            3678999997532             2234788 99999999999 88999999999999999999 9999999999999


Q ss_pred             ccCC--------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966          67 MLDD--------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA  124 (149)
Q Consensus        67 ~~~~--------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~  124 (149)
                      .|..        ++||+|||+|++|+||+++|+              +|.|||++|.+||+|.+++|++.+++.+++.++
T Consensus       433 ~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~  512 (570)
T 4gr5_A          433 RFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLV  512 (570)
T ss_dssp             HEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------------------------
T ss_pred             ccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEE
Confidence            8853        379999999999999999997              999999999999999999999999998899999


Q ss_pred             EEEEeCCC-CCCCHHHHHHHhhcc
Q psy4966         125 AVVVPKPN-SSVTAEEVKQFVEFP  147 (149)
Q Consensus       125 a~v~~~~~-~~~~~~~l~~~l~~~  147 (149)
                      |+|++..+ ...+.++|+++|++.
T Consensus       513 a~vv~~~~~~~~~~~~l~~~l~~~  536 (570)
T 4gr5_A          513 AYVVAERADAPPDAAELRRHVAEA  536 (570)
T ss_dssp             ------------------------
T ss_pred             EEEEecCCCCCcCHHHHHHHHHhh
Confidence            99987643 356677888888764

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.96  E-value=4.4e-30  Score=216.65  Aligned_cols=146  Identities=37%  Similarity=0.650  Sum_probs=81.9

Q ss_pred             CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++..              ...++|+ |+|+++++|+|+++++++++|+.|||+|+|+. +.|||++|+.|+
T Consensus       373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~  451 (979)
T 3tsy_A          373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATA  451 (979)
T ss_dssp             EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHH
T ss_pred             EEeeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhh
Confidence            3678999998632              3456788 99999999999888999999999999999999 999999999999


Q ss_pred             cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      +.|..++||+|||++++|++|+++|+              +|.|||++|.+||+|.+++|++++++.+|+.++++|+..+
T Consensus       452 ~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~  531 (979)
T 3tsy_A          452 ETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSK  531 (979)
T ss_dssp             HHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------------------------------------
T ss_pred             hhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECC
Confidence            99988999999999999999999997              9999999999999999999999999999999999999887


Q ss_pred             CCCCCHHHHHHHhhcc
Q psy4966         132 NSSVTAEEVKQFVEFP  147 (149)
Q Consensus       132 ~~~~~~~~l~~~l~~~  147 (149)
                      +...+.++|+++|++.
T Consensus       532 ~~~~~~~~l~~~l~~~  547 (979)
T 3tsy_A          532 DSELSEDDVKQFVSKQ  547 (979)
T ss_dssp             ----------------
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            7777788888888765

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.96  E-value=3.5e-29  Score=198.76  Aligned_cols=142  Identities=29%  Similarity=0.514  Sum_probs=127.8

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++.           ....++|+ |+++++++++| +++.+++.| .|||+++|+. +.|||++|+.|...|
T Consensus       311 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f  387 (517)
T 3r44_A          311 VVQGYALTESCGGGTLLLSEDALRKAGSAGR-ATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF  387 (517)
T ss_dssp             EEEEEECGGGTTCEEEECGGGTTTTTTCCBE-ECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE
T ss_pred             EEEeecccccccceeecCCccccccCCCCCc-CCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh
Confidence            367899999853           23466788 99999999999 889999998 8999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .++||+|||+|++|+||+++|+              +|.|||++|.+||+|.+++|++.+++.+|+.+++++ +.++..
T Consensus       388 -~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~  465 (517)
T 3r44_A          388 -DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNE  465 (517)
T ss_dssp             -ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTT
T ss_pred             -cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCC
Confidence             6899999999999999999997              999999999999999999999999999999888888 555667


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++|+++|++.
T Consensus       466 ~~~~~l~~~l~~~  478 (517)
T 3r44_A          466 VSEQQIVEYCGTR  478 (517)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            8889999998764

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.96  E-value=8.7e-30  Score=203.16  Aligned_cols=143  Identities=33%  Similarity=0.427  Sum_probs=103.7

Q ss_pred             CeeeeccCCcccc--------------------cccCcCccccCCceEEEEcCCCCccCCC--CCeeEEEEEcCC-Cccc
Q psy4966           1 MFLVVGLVGKSKQ--------------------KATLTGKHFQEHNAIKIIDPVTSVQLPD--GKTGELCLKGDV-FLGY   57 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~--g~~Gel~v~~~~-~~gY   57 (149)
                      ++..||+||++..                    ...++|+ |+|+++++|+| ++|++++.  ++.|||+++|+. +.||
T Consensus       320 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY  397 (541)
T 1v25_A          320 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGY  397 (541)
T ss_dssp             EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBE-ECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSC
T ss_pred             eeecccccccccceecccccccccccCccccccccCCCCC-cCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccc
Confidence            3678999998632                    1356788 99999999999 88998885  368999999999 9999


Q ss_pred             cCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeE
Q psy4966          58 RNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELP  123 (149)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~  123 (149)
                      |++|+.|++.|..+|||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|++++++.+|+.+
T Consensus       398 ~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~  477 (541)
T 1v25_A          398 YGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP  477 (541)
T ss_dssp             BTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEE
T ss_pred             cCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceE
Confidence            9999999999977999999999999999999997              99999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHhhc
Q psy4966         124 AAVVVPKPNSSVTAEEVKQFVEF  146 (149)
Q Consensus       124 ~a~v~~~~~~~~~~~~l~~~l~~  146 (149)
                      +|+|++. +...+.++++++|++
T Consensus       478 ~a~vv~~-~~~~~~~~l~~~~~~  499 (541)
T 1v25_A          478 LAVVVPR-GEKPTPEELNEHLLK  499 (541)
T ss_dssp             EECC-------------------
T ss_pred             EEEEEEC-CCCCCHHHHHHHHHh
Confidence            9999876 445566778877765

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.96  E-value=4.6e-29  Score=197.80  Aligned_cols=145  Identities=20%  Similarity=0.188  Sum_probs=122.7

Q ss_pred             CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++..              ...++|+ |+|+++++|+| ++|+++++|+.|||+++|+. +.|||++++.++
T Consensus       293 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~  370 (521)
T 3l8c_A          293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTA  370 (521)
T ss_dssp             EEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHH
T ss_pred             EEeCcCccHHhhhhceeecccccccCCCcccccc-ccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhh
Confidence            3678999998753              2345788 99999999999 88999999999999999999 999999999999


Q ss_pred             ccc---CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCC-CCCeEEEEE
Q psy4966          66 EML---DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDV-FGELPAAVV  127 (149)
Q Consensus        66 ~~~---~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~-~g~~~~a~v  127 (149)
                      +.|   +.++||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|++.++.. .++.++|+|
T Consensus       371 ~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~v  450 (521)
T 3l8c_A          371 EAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYI  450 (521)
T ss_dssp             HHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEE
T ss_pred             ccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEE
Confidence            988   45689999999999999999997              999999999999999999999987654 468899999


Q ss_pred             EeCCCCCCC-------HHHHHHHhhcc
Q psy4966         128 VPKPNSSVT-------AEEVKQFVEFP  147 (149)
Q Consensus       128 ~~~~~~~~~-------~~~l~~~l~~~  147 (149)
                      ++.++...+       .++|+++|++.
T Consensus       451 v~~~~~~~~~~~~~~~~~~l~~~l~~~  477 (521)
T 3l8c_A          451 VVKDGVKERFDRELELTKAIKASVKDH  477 (521)
T ss_dssp             EECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred             EecCccccccccchhhHHHHHHHHHhh
Confidence            998764321       46788877764

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.96  E-value=4.7e-30  Score=203.14  Aligned_cols=144  Identities=33%  Similarity=0.580  Sum_probs=79.0

Q ss_pred             CeeeeccCCcccc--------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCC
Q psy4966           1 MFLVVGLVGKSKQ--------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD   71 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~   71 (149)
                      ++..||+||++..        ...++|+ |+++++++|+| ++++++++|+.|||+++|+. +.|||++++.+...| .+
T Consensus       298 ~~~~YG~TE~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~  374 (509)
T 3ivr_A          298 FWATFGQSETSGLSTFAPYRDRPKSAGR-PLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RN  374 (509)
T ss_dssp             EEEEEEEGGGTEEEEEEEGGGSTTSCCE-ECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GG
T ss_pred             EEcccCccccccccccCccccCCCcccc-cCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hc
Confidence            3678999998742        2244788 99999999999 78999999999999999999 999999999999999 48


Q ss_pred             CeEEcCceEEEcCCCeEEEE----------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCC
Q psy4966          72 GWLHTGDLAYRLPDGTHFII----------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSV  135 (149)
Q Consensus        72 ~~~~TGD~~~~~~~G~~~i~----------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  135 (149)
                      +||+|||+|++|++|+++|+                +|.|||++|.+||+|.+++|++.+++.+|+.+++++++.++...
T Consensus       375 g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~  454 (509)
T 3ivr_A          375 GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI  454 (509)
T ss_dssp             GSEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred             CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC
Confidence            99999999999999999986                89999999999999999999999999999999999999887777


Q ss_pred             CHHHHHHHhhcc
Q psy4966         136 TAEEVKQFVEFP  147 (149)
Q Consensus       136 ~~~~l~~~l~~~  147 (149)
                      +.++|+++|++.
T Consensus       455 ~~~~l~~~l~~~  466 (509)
T 3ivr_A          455 AADALAEFVASL  466 (509)
T ss_dssp             ------------
T ss_pred             CHHHHHHHHHhh
Confidence            888888888764

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.96  E-value=6.1e-29  Score=202.32  Aligned_cols=145  Identities=21%  Similarity=0.182  Sum_probs=126.7

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEc--CC-CccccCCchhhhc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKG--DV-FLGYRNKVEATKE   66 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~~-~~gY~~~~~~~~~   66 (149)
                      ++..||+||++.           ...+++|+ |+++++++|+| ++|++++.|+.|||+|+|  |. +.|||++++.+..
T Consensus       409 i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~-p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~  486 (652)
T 1pg4_A          409 VVDTWWQTETGGFMITPLPGAIELKAGSATR-PFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ  486 (652)
T ss_dssp             EEEEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHH
T ss_pred             EEccccCcccccceecCCCCCcCccCCcccc-CcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHh
Confidence            357899999863           23456788 99999999999 889999999999999999  67 9999999998877


Q ss_pred             ccC--CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          67 MLD--DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        67 ~~~--~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      .|.  .+|||+|||+|++|+||+++|+              +|.|||++|.+||+|.+|+|++++++..|+.++|+|+++
T Consensus       487 ~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~  566 (652)
T 1pg4_A          487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN  566 (652)
T ss_dssp             HHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred             hhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEEC
Confidence            663  3789999999999999999997              999999999999999999999999999999999999998


Q ss_pred             CCCCCC---HHHHHHHhhcc
Q psy4966         131 PNSSVT---AEEVKQFVEFP  147 (149)
Q Consensus       131 ~~~~~~---~~~l~~~l~~~  147 (149)
                      ++...+   .++|+++|++.
T Consensus       567 ~~~~~~~~~~~~l~~~l~~~  586 (652)
T 1pg4_A          567 HGEEPSPELYAEVRNWVRKE  586 (652)
T ss_dssp             TTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            776555   46777777654

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.96  E-value=9.1e-30  Score=203.16  Aligned_cols=143  Identities=27%  Similarity=0.484  Sum_probs=80.1

Q ss_pred             CeeeeccCCcccc----------cccCcCcccc-CCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQ----------KATLTGKHFQ-EHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~----------~~~~~g~~p~-~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++..          ...++|+ |+ ++++++|+| ++++++|+|+.|||+++|+. +.|||++|+.++..|
T Consensus       335 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f  412 (544)
T 3o83_A          335 LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR-PISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVF  412 (544)
T ss_dssp             EEEEEECTTSCEEECCTTSCHHHHHHCCCE-ESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHB
T ss_pred             EEeeeccccccceeecCCCchhhccCCCce-ecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhC
Confidence            3678999997632          2356788 75 899999999 99999999999999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..++||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|++++++.+|+.++|+++..+ ..
T Consensus       413 ~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~  491 (544)
T 3o83_A          413 DEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PE  491 (544)
T ss_dssp             CTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------------------
T ss_pred             CCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CC
Confidence            88999999999999999999997              9999999999999999999999999999999999999875 34


Q ss_pred             CCHHHHHHHhhc
Q psy4966         135 VTAEEVKQFVEF  146 (149)
Q Consensus       135 ~~~~~l~~~l~~  146 (149)
                      .+.+.++++|++
T Consensus       492 ~~~~~l~~~~~~  503 (544)
T 3o83_A          492 LKAVVLRRHLME  503 (544)
T ss_dssp             ------------
T ss_pred             CCHHHHHHHHHh
Confidence            566677777765

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.96  E-value=6e-29  Score=199.62  Aligned_cols=144  Identities=26%  Similarity=0.346  Sum_probs=125.8

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEE-----cCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLK-----GDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~-----~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++.         ....++|+ |+|+++++|+| ++|+++|+|+.|||+++     |+. +.|||++++.|.
T Consensus       350 i~~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~  427 (570)
T 3c5e_A          350 IRESYGQTETGLTCMVSKTMKIKPGYMGT-AASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA  427 (570)
T ss_dssp             CEEEEEETTTEEEEECCTTSCCCTTCCCE-ECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHH
T ss_pred             hhhccchhhcccceecCcccccCCCcccc-cCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhh
Confidence            468999999863         23456788 99999999999 88999999999999999     888 999999999999


Q ss_pred             cccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          66 EMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        66 ~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      ..| .++||+|||++++|++|+++|+              +|.|||++|.+||+|.+++|++.+++.+|+.++|+|++.+
T Consensus       428 ~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~  506 (570)
T 3c5e_A          428 ANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS  506 (570)
T ss_dssp             HTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECG
T ss_pred             hhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECC
Confidence            999 4899999999999999999997              9999999999999999999999999999999999999876


Q ss_pred             CCC-CC----HHHHHHHhhcc
Q psy4966         132 NSS-VT----AEEVKQFVEFP  147 (149)
Q Consensus       132 ~~~-~~----~~~l~~~l~~~  147 (149)
                      +.. .+    .++|+++|++.
T Consensus       507 ~~~~~~~~~~~~~l~~~l~~~  527 (570)
T 3c5e_A          507 QFLSHDPEQLTKELQQHVKSV  527 (570)
T ss_dssp             GGTTSCHHHHHHHHHHHHHHH
T ss_pred             cccCcchHHHHHHHHHHHHhh
Confidence            531 12    45677776543

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.96  E-value=3e-28  Score=192.92  Aligned_cols=144  Identities=24%  Similarity=0.301  Sum_probs=125.4

Q ss_pred             CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++..              ...++|+ |+++++++++| ++|+++++|+.|||+++|+. +.|||++|+.++
T Consensus       290 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~  367 (512)
T 3fce_A          290 IMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY-CKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTE  367 (512)
T ss_dssp             EEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE-ECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHH
T ss_pred             EEeCcccChhhhheeeEEeccccccccCCCcccc-ccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhh
Confidence            3678999998742              2345788 99999999999 89999999999999999999 999999999999


Q ss_pred             ccc---CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEE
Q psy4966          66 EML---DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV  128 (149)
Q Consensus        66 ~~~---~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~  128 (149)
                      ..|   ++++||+|||+|++ ++|+++|+              +|.|||++|.+||+|.+++|+++++...++.++|+|+
T Consensus       368 ~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv  446 (512)
T 3fce_A          368 KAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVV  446 (512)
T ss_dssp             HHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             hccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEe
Confidence            988   34679999999999 79999997              9999999999999999999999999988899999999


Q ss_pred             eCCCCCCCH----HHHHHHhhcc
Q psy4966         129 PKPNSSVTA----EEVKQFVEFP  147 (149)
Q Consensus       129 ~~~~~~~~~----~~l~~~l~~~  147 (149)
                      +.++...+.    ++|+++|++.
T Consensus       447 ~~~~~~~~~~~~~~~l~~~l~~~  469 (512)
T 3fce_A          447 PGEHSFEKEFKLTSAIKKELNER  469 (512)
T ss_dssp             ECSCCCSSHHHHHHHHHHHHHTT
T ss_pred             cCCccccchhhhHHHHHHHHHhh
Confidence            887654443    4577777654

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.96  E-value=4.5e-28  Score=191.97  Aligned_cols=143  Identities=24%  Similarity=0.301  Sum_probs=123.1

Q ss_pred             CeeeeccCCcccc--------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQ--------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~--------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++..              ...++|+ |+|+++++|+| ++|+++|+|+.|||+++|+. +.|||++|+.|+
T Consensus       289 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~  366 (511)
T 3e7w_A          289 IFNTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTE  366 (511)
T ss_dssp             EEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHH
T ss_pred             EEeCcccchheeeeeEEeccccccccCCcCCCcc-eeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccch
Confidence            3678999998642              2234788 99999999999 88999999999999999999 999999999999


Q ss_pred             cccCC-CC--eEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEE
Q psy4966          66 EMLDD-DG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV  128 (149)
Q Consensus        66 ~~~~~-~~--~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~  128 (149)
                      ..|.. ++  ||+|||+|++ +||+++|+              +|.|||++|.+||+|.+++|++.+++..++.++++++
T Consensus       367 ~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv  445 (511)
T 3e7w_A          367 KAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIV  445 (511)
T ss_dssp             HHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEE
T ss_pred             hhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEE
Confidence            98842 23  7999999999 59999997              9999999999999999999999999989999999999


Q ss_pred             eCCCCCCCH----HHHHHHhhc
Q psy4966         129 PKPNSSVTA----EEVKQFVEF  146 (149)
Q Consensus       129 ~~~~~~~~~----~~l~~~l~~  146 (149)
                      ..++...+.    ++|+++|++
T Consensus       446 ~~~~~~~~~~~~~~~l~~~l~~  467 (511)
T 3e7w_A          446 PEEHEFEKEFQLTSAIKKELAA  467 (511)
T ss_dssp             ECCCCCSSHHHHHHHHHHHHHH
T ss_pred             eccccccchhhHHHHHHHHHHh
Confidence            987655553    556666654

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.96  E-value=6.6e-28  Score=191.60  Aligned_cols=143  Identities=29%  Similarity=0.398  Sum_probs=125.0

Q ss_pred             CeeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||++.         ....++|+ |+|+++++|+| ++|+++|+|+.|||+++|+. +.|||++++.+...| .
T Consensus       328 i~~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~  404 (529)
T 2v7b_A          328 ILDGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-L  404 (529)
T ss_dssp             EEEEEECTTTSSEEEECCTTCCCTTSCCE-ECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-E
T ss_pred             eeeeEchhhcCceeeccccCCCccCCccc-CCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-h
Confidence            367899999843         23457888 99999999999 88999999999999999999 999999999999998 4


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      ++||+|||+++++++|+++|+              +|.|||++|.+||+|.+++|++. +..+++.+++++++.++...+
T Consensus       405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~  483 (529)
T 2v7b_A          405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS  483 (529)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC
T ss_pred             cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc
Confidence            899999999999999999997              99999999999999999999999 666788899999987654322


Q ss_pred             ---HHHHHHHhhcc
Q psy4966         137 ---AEEVKQFVEFP  147 (149)
Q Consensus       137 ---~~~l~~~l~~~  147 (149)
                         .++|+++|++.
T Consensus       484 ~~~~~~l~~~l~~~  497 (529)
T 2v7b_A          484 EILAEELKAFVKDR  497 (529)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhh
Confidence               35788888764

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.95  E-value=5.2e-28  Score=195.59  Aligned_cols=142  Identities=24%  Similarity=0.408  Sum_probs=127.8

Q ss_pred             CeeeeccCCccccc----------ccCcCcccc-CCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSKQK----------ATLTGKHFQ-EHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~~~----------~~~~g~~p~-~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++...          ..++|+ |+ ++++++|+| ++++++|.|+.|||+|+|+. +.|||++|+.|+..|
T Consensus       330 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f  407 (617)
T 3rg2_A          330 LQQVFGMAEGLVNYTRLDDSAEKIIHTQGY-PMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF  407 (617)
T ss_dssp             EEEEEEETTEEEEECCTTSCHHHHHHCCCE-ESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHB
T ss_pred             EEEEeccCcceeecccCCCcccccccCCCc-cCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhcc
Confidence            36789999976321          235677 76 788999999 89999999999999999999 999999999999999


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                      ..++||+|||++++++||+++|+              +|.|||++|.+||+|.+++|++.+++..|+.++++++..+  .
T Consensus       408 ~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~  485 (617)
T 3rg2_A          408 DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--P  485 (617)
T ss_dssp             CTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--C
T ss_pred             CCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--C
Confidence            88999999999999999999997              9999999999999999999999999998999999999876  4


Q ss_pred             CCHHHHHHHhhc
Q psy4966         135 VTAEEVKQFVEF  146 (149)
Q Consensus       135 ~~~~~l~~~l~~  146 (149)
                      .+.+++++++++
T Consensus       486 ~~~~~l~~~l~~  497 (617)
T 3rg2_A          486 LRAVQVRRFLRE  497 (617)
T ss_dssp             CCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHh
Confidence            678889998876

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.95  E-value=1.1e-27  Score=195.38  Aligned_cols=145  Identities=23%  Similarity=0.208  Sum_probs=121.8

Q ss_pred             eeeeccCCccc------------ccccCcCccccCCceEEEEcCCCCccCCC-CCeeEEEEEc--CC-CccccCCchhhh
Q psy4966           2 FLVVGLVGKSK------------QKATLTGKHFQEHNAIKIIDPVTSVQLPD-GKTGELCLKG--DV-FLGYRNKVEATK   65 (149)
Q Consensus         2 ~~~~g~~e~~~------------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~-g~~Gel~v~~--~~-~~gY~~~~~~~~   65 (149)
                      +..||+||++.            ...+++|+ |+++++++|+|+++|++++. |+.|||+++|  |. +.|||++++.+.
T Consensus       416 ~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~-p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~  494 (663)
T 1ry2_A          416 VDTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYL  494 (663)
T ss_dssp             EECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHH
T ss_pred             EEeECCccccCeeeccCCCCCcccCCCcccc-CcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHH
Confidence            57899999863            23456788 99999999999438999988 9999999999  46 999999999988


Q ss_pred             cccCC--CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEe
Q psy4966          66 EMLDD--DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP  129 (149)
Q Consensus        66 ~~~~~--~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~  129 (149)
                      ..|..  +|||+|||+|++|+||+++|+              +|.|||++|.+||+|.+|+|++.+++..|+.++|+|++
T Consensus       495 ~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~  574 (663)
T 1ry2_A          495 DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL  574 (663)
T ss_dssp             HHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEE
T ss_pred             HhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEE
Confidence            87643  789999999999999999997              99999999999999999999999999999999999999


Q ss_pred             CCCCC---C-C------HHHHHHHhhcc
Q psy4966         130 KPNSS---V-T------AEEVKQFVEFP  147 (149)
Q Consensus       130 ~~~~~---~-~------~~~l~~~l~~~  147 (149)
                      +++..   . +      .++|+++|++.
T Consensus       575 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~  602 (663)
T 1ry2_A          575 KNKSSWSTATDDELQDIKKHLVFTVRKD  602 (663)
T ss_dssp             C------------CCSHHHHHHHHHHHH
T ss_pred             cCCCccccccchhHHHHHHHHHHHHHHh
Confidence            87643   2 2      46777777653

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.95  E-value=5e-27  Score=202.77  Aligned_cols=143  Identities=29%  Similarity=0.366  Sum_probs=126.7

Q ss_pred             CeeeeccCCcccc-------------cccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhc
Q psy4966           1 MFLVVGLVGKSKQ-------------KATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKE   66 (149)
Q Consensus         1 ~~~~~g~~e~~~~-------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~   66 (149)
                      ++..||+||++..             ...++|+ |+++++++|+| ++++++|.|..|||+|+|+. +.|||++|+.|++
T Consensus       749 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~  826 (1304)
T 2vsq_A          749 LINCYGPTEGTVFATAHVVHDLPDSISSLPIGK-PISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKE  826 (1304)
T ss_dssp             EEEEECCGGGSSCSEEEECCCCCSSCSSCCCBE-ECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHH
T ss_pred             EEEeEChhHHhHHheeeeccCccccCCCCCCce-eeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchh
Confidence            3678999998642             1235788 99999999999 88999999999999999999 9999999999999


Q ss_pred             ccCC------CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEE
Q psy4966          67 MLDD------DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAV  126 (149)
Q Consensus        67 ~~~~------~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~  126 (149)
                      .|..      ++||+|||+|++++||+|+|+              +|.|||++|.+||+|.+|+|++.++...++.++|+
T Consensus       827 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~  906 (1304)
T 2vsq_A          827 KFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAY  906 (1304)
T ss_dssp             HEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEE
T ss_pred             hhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEE
Confidence            9842      459999999999999999997              99999999999999999999999888888999999


Q ss_pred             EEeCCCCCCCHHHHHHHhhcc
Q psy4966         127 VVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       127 v~~~~~~~~~~~~l~~~l~~~  147 (149)
                      ++...  ..+.++|+++|++.
T Consensus       907 vv~~~--~~~~~~l~~~l~~~  925 (1304)
T 2vsq_A          907 LVNRT--QLSAEDVKAHLKKQ  925 (1304)
T ss_dssp             EECSS--SSCHHHHHHHHHHH
T ss_pred             EeCCC--CCCHHHHHHHHHHh
Confidence            98765  46778899988764

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.94  E-value=2.2e-26  Score=181.66  Aligned_cols=136  Identities=23%  Similarity=0.481  Sum_probs=119.7

Q ss_pred             CeeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           1 MFLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         1 ~~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      ++..||+||++.           ....++|+ |+++++++++|+ +     ++..|||+++|+. +.|||++++.+.. |
T Consensus       301 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~-~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~  372 (501)
T 3ipl_A          301 IYNSFGMTETCSQFLTATPEMLHARPDTVGM-PSANVDVKIKNP-N-----KEGHGELMIKGANVMNGYLYPTDLTGT-F  372 (501)
T ss_dssp             EEEEEEEGGGTEEEEEECHHHHHHCTTCCBE-ECTTCEEEEESC-C-----SSCCEEEEEESTTSCSCCSBSTTCCCS-E
T ss_pred             EeccccccccccceeecCccccccCCCCCCC-CCCCcEEEEecC-C-----CCCccEEEEeccchhhhhCcChhhcch-h
Confidence            367899999864           23467888 999999999994 3     4677999999999 9999999999887 5


Q ss_pred             CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCC
Q psy4966          69 DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSS  134 (149)
Q Consensus        69 ~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  134 (149)
                       .+|||+|||+|++|++|+++|+              +|.|||++|.+||+|.+++|++.+++.+|+.++++++...  .
T Consensus       373 -~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~--~  449 (501)
T 3ipl_A          373 -ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES--D  449 (501)
T ss_dssp             -ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--C
T ss_pred             -cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC--C
Confidence             5899999999999999999997              9999999999999999999999999999999999998743  5


Q ss_pred             CCHHHHHHHhhcc
Q psy4966         135 VTAEEVKQFVEFP  147 (149)
Q Consensus       135 ~~~~~l~~~l~~~  147 (149)
                      .+.++|+++|++.
T Consensus       450 ~~~~~l~~~l~~~  462 (501)
T 3ipl_A          450 ISKAQLIAYLSKH  462 (501)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh
Confidence            6788999988765

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.94  E-value=3.5e-27  Score=188.62  Aligned_cols=145  Identities=19%  Similarity=0.259  Sum_probs=77.5

Q ss_pred             CeeeeccCCccc----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC
Q psy4966           1 MFLVVGLVGKSK----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD   69 (149)
Q Consensus         1 ~~~~~g~~e~~~----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~   69 (149)
                      ++..||+||++.          ....++|+ |+++++++++|++++.++++|+.|||+++|+. +.|||++|+.+...+ 
T Consensus       322 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-  399 (562)
T 3ite_A          322 LVNVYGPTEVTIGCSAGRILPDSDTRCIGH-PLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-  399 (562)
T ss_dssp             EEEEECCGGGCSCSEEEECCTTSCTTEEEE-ECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-
T ss_pred             EEEeeccchheeeeeeeeecCCCCCccccc-cCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-
Confidence            367899999863          22345777 99999999999777899999999999999999 999999999888765 


Q ss_pred             CCC--eEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcC-CCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          70 DDG--WLHTGDLAYRLPDGTHFII--------------SPCELESIFRQH-PDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        70 ~~~--~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~-~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                      .+|  ||+|||+|++|+||+++|+              +|.|||++|.++ +.+.+++|++.+++..++..+++++...+
T Consensus       400 ~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  479 (562)
T 3ite_A          400 INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG  479 (562)
T ss_dssp             ETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------------------------
T ss_pred             CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccc
Confidence            344  9999999999999999997              999999999998 77889999999998888776666555433


Q ss_pred             CCCC-------------HHHHHHHhhcc
Q psy4966         133 SSVT-------------AEEVKQFVEFP  147 (149)
Q Consensus       133 ~~~~-------------~~~l~~~l~~~  147 (149)
                      ....             .++|+++|++.
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~  507 (562)
T 3ite_A          480 AAVRGELRWINENYKEINNSLRQACEQT  507 (562)
T ss_dssp             ----------------------------
T ss_pred             ccccccccccccchhhHHHHHHHHHHhh
Confidence            2222             23677777654

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.94  E-value=1.5e-26  Score=187.49  Aligned_cols=140  Identities=21%  Similarity=0.218  Sum_probs=114.4

Q ss_pred             CeeeeccCCcccc-------------cccCcCccccCCceEEEEcCCCCcc-CCCCCeeEEEEEcCC-CccccCCchhhh
Q psy4966           1 MFLVVGLVGKSKQ-------------KATLTGKHFQEHNAIKIIDPVTSVQ-LPDGKTGELCLKGDV-FLGYRNKVEATK   65 (149)
Q Consensus         1 ~~~~~g~~e~~~~-------------~~~~~g~~p~~~~~~~i~d~~~g~~-~~~g~~Gel~v~~~~-~~gY~~~~~~~~   65 (149)
                      ++..||+||++..             ...++|+ |+++++++|+| +++++ +|+|+.|||+|+|+. +.|||++|+.|+
T Consensus       305 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~  382 (620)
T 4dg8_A          305 LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK-AIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTR  382 (620)
T ss_dssp             EEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE-ECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHH
T ss_pred             EEeeEchhhhhhheEEEeccccccCCCCCCcee-cccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhh
Confidence            3678999998642             2346788 99999999999 77766 799999999999999 999999999999


Q ss_pred             cccCCC-------CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966          66 EMLDDD-------GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA  124 (149)
Q Consensus        66 ~~~~~~-------~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~  124 (149)
                      ..|..+       +||+|||++++++||+++|+              +|.|||++|.+||+|.+|+|++.++...++.++
T Consensus       383 ~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~  462 (620)
T 4dg8_A          383 ASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLC  462 (620)
T ss_dssp             HHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEE
T ss_pred             hhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEE
Confidence            999643       79999999999999999997              999999999999999999999998886555554


Q ss_pred             EEEEeCCCCCCCHHHHHHHhh
Q psy4966         125 AVVVPKPNSSVTAEEVKQFVE  145 (149)
Q Consensus       125 a~v~~~~~~~~~~~~l~~~l~  145 (149)
                      +++ ...  ....+.+.+.|.
T Consensus       463 ~~~-~~~--~~~~~~l~~~Lp  480 (620)
T 4dg8_A          463 AWT-GKA--DASPQALLRQLP  480 (620)
T ss_dssp             EEE-ECT--TCCCHHHHHHSC
T ss_pred             EEe-cCh--HHHHHHHHHhCh
Confidence            444 332  223355555443

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.94  E-value=1.4e-26  Score=185.69  Aligned_cols=126  Identities=20%  Similarity=0.264  Sum_probs=106.1

Q ss_pred             cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCC------CC--eEEcCceEEEcCCC
Q psy4966          16 TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDD------DG--WLHTGDLAYRLPDG   86 (149)
Q Consensus        16 ~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~G   86 (149)
                      .++|+ |+++  ++|+|+++++++++|+.|||+|+|+. +.|||++|+.|++.|..      +|  ||+|||+|++| +|
T Consensus       374 ~~~G~-p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG  449 (590)
T 3kxw_A          374 VSSGN-PIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-EN  449 (590)
T ss_dssp             ECCCE-ESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TT
T ss_pred             eccCC-CCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CC
Confidence            45677 8888  88999666999999999999999999 99999999999999853      24  99999999999 99


Q ss_pred             eEEEE--------------ChHHHHHHH-hcCCCcc--cEEEEeeecCCCCCeEEEEEEeCCCC--CCCHHHHHHHhhc
Q psy4966          87 THFII--------------SPCELESIF-RQHPDVE--DVAVIGIPHDVFGELPAAVVVPKPNS--SVTAEEVKQFVEF  146 (149)
Q Consensus        87 ~~~i~--------------~~~eIE~~l-~~~~~V~--~~~v~~~~~~~~g~~~~a~v~~~~~~--~~~~~~l~~~l~~  146 (149)
                      +++|+              +|.|||++| ..+|.|.  +|+|++++++. ++.+++++++.++.  ..+.+++.++|++
T Consensus       450 ~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~  527 (590)
T 3kxw_A          450 ELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFE  527 (590)
T ss_dssp             EEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred             EEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHH
Confidence            99997              899999999 8899998  89999998876 67888888887653  3445666666654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.84  E-value=6.6e-21  Score=148.13  Aligned_cols=132  Identities=22%  Similarity=0.242  Sum_probs=104.6

Q ss_pred             CeeeeccCCcccc-c----c--cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCe
Q psy4966           1 MFLVVGLVGKSKQ-K----A--TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGW   73 (149)
Q Consensus         1 ~~~~~g~~e~~~~-~----~--~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~   73 (149)
                      ++..||+||++.. .    .  ...+. |.+++.++++||++|+++++|+.|||+++|..           ...+ ..+|
T Consensus       234 v~~~YG~TE~~~~~~~~~~~~~~g~~~-~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~-----------~~~~-~~~~  300 (436)
T 3qov_A          234 AYNSFGMTEMNGPGVAFECQEQNGMHF-WEDCYLVEIIDPETGEPVPEGEIGELVLTTLD-----------REMM-PLIR  300 (436)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTCSSEEE-CTTTEEEEEECTTTCSBCSTTCCEEEEEEESS-----------CCSS-CCCS
T ss_pred             EEecCcchhhcCCeeEEecCCCCeeEE-ccCceEEEEEECCCCCCCCCCCceEEEEeccC-----------cCCc-eEEE
Confidence            3678999998421 1    1  11233 55799999999889999999999999999854           1223 4789


Q ss_pred             EEcCceEEEcCCC------e---EEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeC
Q psy4966          74 LHTGDLAYRLPDG------T---HFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPK  130 (149)
Q Consensus        74 ~~TGD~~~~~~~G------~---~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~  130 (149)
                      |+|||+++++++|      +   ++|+              +|.|||++|.+||+|.+++|++.+++..++.++++|++.
T Consensus       301 y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~  380 (436)
T 3qov_A          301 YRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS  380 (436)
T ss_dssp             EEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             EEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc
Confidence            9999999999998      5   4554              999999999999999999999999888889999999998


Q ss_pred             CCCCCC----HHHHHHHhhc
Q psy4966         131 PNSSVT----AEEVKQFVEF  146 (149)
Q Consensus       131 ~~~~~~----~~~l~~~l~~  146 (149)
                       +...+    .+++.++|++
T Consensus       381 -~~~~~~~~~~~~l~~~l~~  399 (436)
T 3qov_A          381 -DLSTDNYIELEKIRRDIIR  399 (436)
T ss_dssp             -TTCCCCHHHHHHHHHHHHH
T ss_pred             -CccccchhhHHHHHHHHHH
Confidence             65554    4566666554

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.83  E-value=7.2e-21  Score=149.01  Aligned_cols=73  Identities=32%  Similarity=0.574  Sum_probs=66.6

Q ss_pred             cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccC-----------CCCeEEcCceEEEc
Q psy4966          16 TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLD-----------DDGWLHTGDLAYRL   83 (149)
Q Consensus        16 ~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~-----------~~~~~~TGD~~~~~   83 (149)
                      .++|+ |++ ++++|+|+++++++|+|++|||+|+|+. |.|||++|+.|++.|.           .++||+|||+|+++
T Consensus       394 ~~~G~-p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d  471 (480)
T 3t5a_A          394 ISYML-PRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT  471 (480)
T ss_dssp             ECEEC-CSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred             eecCc-ccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence            46788 999 9999999666899999999999999999 9999999999999985           46799999999997


Q ss_pred             CCCeEEEE
Q psy4966          84 PDGTHFII   91 (149)
Q Consensus        84 ~~G~~~i~   91 (149)
                       ||+|+|+
T Consensus       472 -dG~l~~~  478 (480)
T 3t5a_A          472 -DGKMFII  478 (480)
T ss_dssp             -TTEEEEC
T ss_pred             -CCEEEEe
Confidence             9999984

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.82  E-value=1.8e-20  Score=145.72  Aligned_cols=134  Identities=25%  Similarity=0.292  Sum_probs=102.5

Q ss_pred             CeeeeccCCc-cc-ccc----cCcCc-cccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCe
Q psy4966           1 MFLVVGLVGK-SK-QKA----TLTGK-HFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGW   73 (149)
Q Consensus         1 ~~~~~g~~e~-~~-~~~----~~~g~-~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~   73 (149)
                      ++..||+||+ +. ...    ...|. .|.+++.++|+|+++|+++|+|+.|||+++|..           ...| .++|
T Consensus       238 v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t-----------~~~~-~~~~  305 (437)
T 2y27_A          238 AVDIYGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT-----------KEAL-PIIR  305 (437)
T ss_dssp             EEEEEEETTTTEEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS-----------CSSS-CCCS
T ss_pred             EEecCCchhhcCCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC-----------cCCc-hhhe
Confidence            3678999997 32 111    11122 145789999999777999999999999998843           2223 4689


Q ss_pred             EEcCceEEEcC-CCeE-----EEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCC
Q psy4966          74 LHTGDLAYRLP-DGTH-----FII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        74 ~~TGD~~~~~~-~G~~-----~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      |+|||++++++ +|++     +|+              +|.|||++|.+||+|.++++++++++..++.++++|++.++.
T Consensus       306 y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~  385 (437)
T 2y27_A          306 YRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET  385 (437)
T ss_dssp             EEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTT
T ss_pred             eecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCc
Confidence            99999999998 6985     554              999999999999999999999998887788999999987654


Q ss_pred             C---CCHHHHHHHhhc
Q psy4966         134 S---VTAEEVKQFVEF  146 (149)
Q Consensus       134 ~---~~~~~l~~~l~~  146 (149)
                      .   .+.++++++|++
T Consensus       386 ~~~~~~~~~l~~~l~~  401 (437)
T 2y27_A          386 APDTAAIQVAKQALAY  401 (437)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHH
Confidence            3   234556666654

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.81  E-value=3.2e-20  Score=144.54  Aligned_cols=134  Identities=25%  Similarity=0.268  Sum_probs=101.9

Q ss_pred             CeeeeccCCcc-c-ccc----cCcCc-cccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCe
Q psy4966           1 MFLVVGLVGKS-K-QKA----TLTGK-HFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGW   73 (149)
Q Consensus         1 ~~~~~g~~e~~-~-~~~----~~~g~-~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~   73 (149)
                      ++..||+||++ . ...    ...|. .|.+++.++++|+++|+++|+|+.|||+++|..           ...| ..+|
T Consensus       240 v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t-----------~~~~-p~~~  307 (443)
T 2y4o_A          240 ALDIYGLSEVMGPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT-----------KEAM-PVIR  307 (443)
T ss_dssp             EEEEEEETTTTEEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS-----------CSSS-CCSS
T ss_pred             EEeccCchhhcCCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC-----------cccC-hhhe
Confidence            36789999973 2 111    11132 145789999999777999999999999999843           1223 4689


Q ss_pred             EEcCceEEEcCC-CeE-----EEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC--
Q psy4966          74 LHTGDLAYRLPD-GTH-----FII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP--  131 (149)
Q Consensus        74 ~~TGD~~~~~~~-G~~-----~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~--  131 (149)
                      |+|||+++++++ |++     +|+              +|.|||++|.+||+|.++++++++++..++.++++|++.+  
T Consensus       308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~  387 (443)
T 2y4o_A          308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA  387 (443)
T ss_dssp             EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHH
T ss_pred             eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcc
Confidence            999999999999 986     554              9999999999999999999999988777888999999875  


Q ss_pred             CC---CCCHHHHHHHhhc
Q psy4966         132 NS---SVTAEEVKQFVEF  146 (149)
Q Consensus       132 ~~---~~~~~~l~~~l~~  146 (149)
                      +.   ..+.++++++|++
T Consensus       388 ~~~~~~~~~~~l~~~l~~  405 (443)
T 2y4o_A          388 AASVTDGERAALARELQH  405 (443)
T ss_dssp             HTTCCHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHH
Confidence            21   2334566666654

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.68  E-value=2.3e-17  Score=125.66  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=84.8

Q ss_pred             CeeeeccCCccccc---------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCCC
Q psy4966           1 MFLVVGLVGKSKQK---------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDD   71 (149)
Q Consensus         1 ~~~~~g~~e~~~~~---------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~   71 (149)
                      ++..||+||++...         .+.+|. ++|++.+.+           +..|||+++|+.               ..+
T Consensus       175 ~~~~YG~TEt~~~~~~~~~~~~~~g~~~~-~~pgv~~~~-----------~~~Gel~~~g~~---------------~~~  227 (358)
T 4gs5_A          175 VYQSYGMTETVSHVALKALNGPEASELYV-FLPGIQYGV-----------DERGCLHISGAV---------------TNG  227 (358)
T ss_dssp             EEEEEECGGGSSEEEEEECSSTTCCSCEE-ECTTCEEEE-----------CTTSEEEEESGG---------------GTT
T ss_pred             EEeccccccccceeecccccccccceeec-cCCCeEEEe-----------cCcCceEEeccc---------------ccC
Confidence            46899999986522         122333 444444443           445888887654               247


Q ss_pred             CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHH---hcCCCcccEEEE-eeecCCCCCeEEEEEEeCCCC
Q psy4966          72 GWLHTGDLAYRLPDGTHFII--------------SPCELESIF---RQHPDVEDVAVI-GIPHDVFGELPAAVVVPKPNS  133 (149)
Q Consensus        72 ~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l---~~~~~V~~~~v~-~~~~~~~g~~~~a~v~~~~~~  133 (149)
                      +||+|||++++|++|+ +|+              +|.|||++|   ..||+|.+++|+ +.+++.+|+.++|+|+.... 
T Consensus       228 g~~~TGDlg~~d~~g~-~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-  305 (358)
T 4gs5_A          228 QTVQTNDLVEIHGNAF-QWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-  305 (358)
T ss_dssp             CCEEEEEEEEECSSEE-EEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-
T ss_pred             cceecCCccccccCce-EEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-
Confidence            8999999999999884 444              999999877   458999998876 67889999999998876543 


Q ss_pred             CCCHHHHHHHhhcc
Q psy4966         134 SVTAEEVKQFVEFP  147 (149)
Q Consensus       134 ~~~~~~l~~~l~~~  147 (149)
                      ..+.++|+++|++.
T Consensus       306 ~~~~~~l~~~l~~~  319 (358)
T 4gs5_A          306 EALTERLTAEIRSR  319 (358)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhh
Confidence            34557788888764

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=98.59  E-value=4.4e-08  Score=74.21  Aligned_cols=70  Identities=14%  Similarity=0.126  Sum_probs=51.4

Q ss_pred             CeeeeccCCccccc---cc-CcCccc------cCCceEEEEcCCCCccCCCCCeeEEEEEcCCCccccCCchhhhcccCC
Q psy4966           1 MFLVVGLVGKSKQK---AT-LTGKHF------QEHNAIKIIDPVTSVQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDD   70 (149)
Q Consensus         1 ~~~~~g~~e~~~~~---~~-~~g~~p------~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~   70 (149)
                      ++..||+||.+...   .. ++|+ |      +|++.++|+|+++|+++|+|+.|||+|++..           ...+  
T Consensus       261 v~~~YG~TE~~~~~~~~~~~~~G~-~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~-----------~~~~--  326 (369)
T 3hgu_A          261 FSASYGSTSALGVSRSLLITSESQ-QVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLS-----------PWAF--  326 (369)
T ss_dssp             EEEEEEEGGGTEEEEECCBCTTCS-SCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEE-----------TTEE--
T ss_pred             EEcccCchhhhcceeccccccCCC-cccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcC-----------cccc--
Confidence            36789999986432   22 3677 8      9999999999658999999999999998743           0111  


Q ss_pred             CCeEEcCceEEEcC
Q psy4966          71 DGWLHTGDLAYRLP   84 (149)
Q Consensus        71 ~~~~~TGD~~~~~~   84 (149)
                      --.|+|||++.+.+
T Consensus       327 l~ry~tgD~~~~~~  340 (369)
T 3hgu_A          327 YPRVAERDTAIRLP  340 (369)
T ss_dssp             EEEEEEEEEEEEEC
T ss_pred             cccccCCceEEEec
Confidence            12477888877753

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.53  E-value=1.4e-07  Score=59.74  Aligned_cols=49  Identities=12%  Similarity=0.055  Sum_probs=43.4

Q ss_pred             ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHH
Q psy4966          92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEV  140 (149)
Q Consensus        92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l  140 (149)
                      +|.|||++|.+||+|.++++++++++.+++.+.++|++.++...+...+
T Consensus        15 ~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~   63 (109)
T 3lax_A           15 FPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRL   63 (109)
T ss_dssp             CHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHH
T ss_pred             CHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchh
Confidence            9999999999999999999999999999999999999988766665433

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=90.36  E-value=1  Score=36.31  Aligned_cols=51  Identities=16%  Similarity=0.108  Sum_probs=36.8

Q ss_pred             ccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcC--C--CeEEEE--------------ChHHHHH
Q psy4966          37 VQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP--D--GTHFII--------------SPCELES   98 (149)
Q Consensus        37 ~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~--~--G~~~i~--------------~~~eIE~   98 (149)
                      .++..|+.++|++....  |.|              -|++||+.++..  +  ..+.|.              +..+||+
T Consensus       379 ~eVe~G~~YelViTt~~--GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~  442 (581)
T 4eql_A          379 EDVKLGCTYEPVVTNFA--GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFK  442 (581)
T ss_dssp             GGCCTTCEEEEEEECSS--SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHH
T ss_pred             HHcCCCceEEEEEeecc--cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHH
Confidence            46678999999996553  111              289999999975  3  345554              8999999


Q ss_pred             HHhcC
Q psy4966          99 IFRQH  103 (149)
Q Consensus        99 ~l~~~  103 (149)
                      +|.+.
T Consensus       443 al~~a  447 (581)
T 4eql_A          443 AVSQA  447 (581)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            99754

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=90.24  E-value=2.1  Score=34.72  Aligned_cols=50  Identities=18%  Similarity=0.226  Sum_probs=36.7

Q ss_pred             ccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcC----CCeEEEE--------------ChHHHHH
Q psy4966          37 VQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLP----DGTHFII--------------SPCELES   98 (149)
Q Consensus        37 ~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~----~G~~~i~--------------~~~eIE~   98 (149)
                      .+++.|+.+||++....  |.|              -|++||+.++..    ...|.|.              +..+||+
T Consensus       391 ~eVe~G~~YelViTt~~--GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~  454 (609)
T 4b2g_A          391 AHVEVGKEYELVITTYA--GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQK  454 (609)
T ss_dssp             GGCCTTCEEEEEEECTT--SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred             hHcCCCCeEEEehhhhh--hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHH
Confidence            46789999999995443  322              189999999974    2455554              8999999


Q ss_pred             HHhc
Q psy4966          99 IFRQ  102 (149)
Q Consensus        99 ~l~~  102 (149)
                      +|..
T Consensus       455 av~~  458 (609)
T 4b2g_A          455 AVDN  458 (609)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9863

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=82.64  E-value=6.6  Score=31.67  Aligned_cols=50  Identities=16%  Similarity=0.137  Sum_probs=35.8

Q ss_pred             ccCCCCCeeEEEEEcCCCccccCCchhhhcccCCCCeEEcCceEEEcCC----CeEEEE--------------ChHHHHH
Q psy4966          37 VQLPDGKTGELCLKGDVFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD----GTHFII--------------SPCELES   98 (149)
Q Consensus        37 ~~~~~g~~Gel~v~~~~~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~----G~~~i~--------------~~~eIE~   98 (149)
                      .+++.|+.++|++....  |.|              -|++||+.++..-    ..+.|.              +..+||+
T Consensus       386 ~eve~G~~YelviTt~~--GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~  449 (581)
T 4epl_A          386 TQVKIGEEYEVVITNYA--GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQL  449 (581)
T ss_dssp             GGCCTTCEEEEEEESTT--SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred             HHcCCCCeEEEEEeecc--cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHH
Confidence            57788999999996543  111              2899999999742    234454              8899999


Q ss_pred             HHhc
Q psy4966          99 IFRQ  102 (149)
Q Consensus        99 ~l~~  102 (149)
                      ++..
T Consensus       450 al~~  453 (581)
T 4epl_A          450 SVES  453 (581)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-35
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-31
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	9e-28
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-25
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-24
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	5e-23
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	3e-22

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  126 bits (317), Expect = 2e-35
 Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 15/132 (11%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDG 86
            K++D  T   L   + GELC++G  +  GY N  EAT  ++D DGWLH+GD+AY   D 
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427

Query: 87  THFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN 132
             FI              ++P ELESI  QHP++ D  V G+P D  GELPAAVVV +  
Sbjct: 428 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 487

Query: 133 SSVTAEEVKQFV 144
            ++T +E+  +V
Sbjct: 488 KTMTEKEIVDYV 499

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  114 bits (286), Expect = 3e-31
 Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 16/134 (11%)

Query: 28  IKIIDPVTSVQLPDGKT-GELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTGDLAYRLPD 85
           +++ D        DGK  GE+ LKG  +  GY    EAT+  L  DG+  TGD+A    +
Sbjct: 359 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 418

Query: 86  GTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP 131
           G   I              IS  +LE+    HP V++ AV+ IPH  + E P AVVVP+ 
Sbjct: 419 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG 478

Query: 132 NSSVTAEEVKQFVE 145
                 E  +  ++
Sbjct: 479 EKPTPEELNEHLLK 492

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  105 bits (262), Expect = 9e-28
 Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 20/141 (14%)

Query: 28  IKIIDPVTSVQLPDGKTGELCLKGD---VFLGYRNKVEATKE--MLDDDGWLHTGDLAYR 82
             ++D            G L +               E  ++           +GD A R
Sbjct: 442 PALVDNEGHP-QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARR 500

Query: 83  LPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV 128
             DG ++I              +   E+ES    HP + + AV+GIPH + G+   A V 
Sbjct: 501 DEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVT 560

Query: 129 PKPNSSVTAEEVKQFVEFPRK 149
                  + E   +   + RK
Sbjct: 561 LNHGEEPSPELYAEVRNWVRK 581

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.2 bits (246), Expect = 1e-25
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 20/141 (14%)

Query: 28  IKIIDPVTSVQLPDGKT-GELCLKGD---VFLGYRNKVEATKE--MLDDDGWLHTGDLAY 81
             ++DP T  +L      G L +K              +   +  +    G+  TGD A 
Sbjct: 430 AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAA 489

Query: 82  RLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVV 127
           +  DG  +I              +S  E+E+   + P V + AV+G   D+ G+  AA V
Sbjct: 490 KDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFV 549

Query: 128 VPKPNSSVTAEEVKQFVEFPR 148
           V K  SS +     +  +  +
Sbjct: 550 VLKNKSSWSTATDDELQDIKK 570

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 95.3 bits (236), Expect = 2e-24
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 23/127 (18%)

Query: 39  LPDGKTGELCLKGD-VFLGYRNKVEATKEMLDD------DGWLHTGDLAYRLPDGTHFI- 90
              G+ GELC+ G+ +  GY  + E T +   D      +    TGD A  L DG     
Sbjct: 351 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 410

Query: 91  -------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA 137
                        +   E+ESI  +H  + + AV             A  V + +  +  
Sbjct: 411 GRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPL 468

Query: 138 EEVKQFV 144
           E+++QF 
Sbjct: 469 EQLRQFS 475

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 91.6 bits (226), Expect = 5e-23
 Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 18  TGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLK--GDVFLGYRNKVEATKEMLDDDGWLH 75
               F     I  I       + +G+ GEL +      F+GY N+ +AT E L D GW  
Sbjct: 324 MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWYR 382

Query: 76  TGDLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGE 121
           T D+A   P+GT  I              I P E+E +    P V +V VIG+    +G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442

Query: 122 LPAAVVVPKPNSSVTAEEVKQFV 144
              A VVP+   +++A+ +  F 
Sbjct: 443 SVTACVVPRLGETLSADALDTFC 465

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 89.3 bits (220), Expect = 3e-22
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 19  GKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD-VFLGYRNKVEATKEMLDDDGWLHTG 77
           GK    ++  ++ D      +  G+TG L  +G     GY    E       +DG+  TG
Sbjct: 354 GKPMSPYDESRVWDD-HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG 412

Query: 78  DLAYRLPDGTHFI--------------ISPCELESIFRQHPDVEDVAVIGIPHDVFGELP 123
           D+     DG   +              ++  E+E+    HP V D A++ +P    GE  
Sbjct: 413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472

Query: 124 AAVVVPKPNSSVTAEEVKQFV 144
              ++P+   +  A E+K F+
Sbjct: 473 CVFIIPRDE-APKAAELKAFL 492

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.97
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.96
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.96
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.94
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.94
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.91
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.87
d1rbli_	109	Ribulose 1,5-bisphosphate carboxylase-oxygenase {S	82.28
d2cyya2	86	Putative transcriptional regulator PH1519 {Archaeo	80.34

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.97  E-value=2.2e-31  Score=208.39  Aligned_cols=145  Identities=41%  Similarity=0.660  Sum_probs=133.2

Q ss_pred             eeeeccCCccc---------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCC
Q psy4966           2 FLVVGLVGKSK---------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDD   71 (149)
Q Consensus         2 ~~~~g~~e~~~---------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~   71 (149)
                      +..||+||++.         ...+++|+ |+|+++++|+|++++++++.|+.|||+++|+. +.||+++++.+...+..+
T Consensus       334 ~~~YG~TE~~~~~~~~~~~~~~~~svG~-p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~  412 (541)
T d1lcia_         334 RQGYGLTETTSAILITPEGDDKPGAVGK-VVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKD  412 (541)
T ss_dssp             BCEECCGGGSSCSEECCCC---CCCCBE-ECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTT
T ss_pred             eecCCccccCceEEecCcccCCCCcccc-ccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCC
Confidence            56899999964         34567898 99999999999888999999999999999999 999999999998888789


Q ss_pred             CeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCH
Q psy4966          72 GWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTA  137 (149)
Q Consensus        72 ~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~  137 (149)
                      +||+|||+++++++|++++.              +|.|||++|.+||+|.+|+|++++++..|++++|+|+++++...+.
T Consensus       413 ~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~  492 (541)
T d1lcia_         413 GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE  492 (541)
T ss_dssp             SCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH
T ss_pred             ccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCH
Confidence            99999999999999999996              9999999999999999999999999999999999999998888999


Q ss_pred             HHHHHHhhcc
Q psy4966         138 EEVKQFVEFP  147 (149)
Q Consensus       138 ~~l~~~l~~~  147 (149)
                      ++|+++|+++
T Consensus       493 ~~l~~~~~~~  502 (541)
T d1lcia_         493 KEIVDYVASQ  502 (541)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988864

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.96  E-value=6.5e-29  Score=200.00  Aligned_cols=144  Identities=22%  Similarity=0.207  Sum_probs=126.7

Q ss_pred             eeeeccCCccc-----------ccccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcC--C-CccccCCchhhhcc
Q psy4966           2 FLVVGLVGKSK-----------QKATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGD--V-FLGYRNKVEATKEM   67 (149)
Q Consensus         2 ~~~~g~~e~~~-----------~~~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--~-~~gY~~~~~~~~~~   67 (149)
                      +..||+||++.           .+.+++|+ |+||++++++| ++|+++++|+.|||+++++  . +.|||++++.+.+.
T Consensus       406 ~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~-p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~  483 (643)
T d1pg4a_         406 VDTWWQTETGGFMITPLPGAIELKAGSATR-PFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQT  483 (643)
T ss_dssp             EEEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHH
T ss_pred             EEeechhhccceEEecCCCccCCCCCcccc-ccCCCEEEEEC-CCCCCCCCCceEEEEEecCCCcccccccCChhhchhh
Confidence            56899999863           23467888 99999999999 8899999999999999995  5 89999999888766


Q ss_pred             c--CCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCC
Q psy4966          68 L--DDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKP  131 (149)
Q Consensus        68 ~--~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~  131 (149)
                      +  ..+|||+|||+|++|++|+++|+              +|.|||++|.+||+|.+|+|++++++..|+.++|||++++
T Consensus       484 ~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~  563 (643)
T d1pg4a_         484 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNH  563 (643)
T ss_dssp             HHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred             hcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECC
Confidence            5  24789999999999999999997              8999999999999999999999999999999999999998


Q ss_pred             CCCCCHH---HHHHHhhcc
Q psy4966         132 NSSVTAE---EVKQFVEFP  147 (149)
Q Consensus       132 ~~~~~~~---~l~~~l~~~  147 (149)
                      +...+.+   +|+++|+++
T Consensus       564 ~~~~~~~~~~~i~~~~~~~  582 (643)
T d1pg4a_         564 GEEPSPELYAEVRNWVRKE  582 (643)
T ss_dssp             TCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            8777754   677777654

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.1e-29  Score=199.00  Aligned_cols=143  Identities=31%  Similarity=0.412  Sum_probs=103.8

Q ss_pred             eeeeccCCcccc--------------------cccCcCccccCCceEEEEcCCCCccCCC--CCeeEEEEEcCC-Ccccc
Q psy4966           2 FLVVGLVGKSKQ--------------------KATLTGKHFQEHNAIKIIDPVTSVQLPD--GKTGELCLKGDV-FLGYR   58 (149)
Q Consensus         2 ~~~~g~~e~~~~--------------------~~~~~g~~p~~~~~~~i~d~~~g~~~~~--g~~Gel~v~~~~-~~gY~   58 (149)
                      +..||+||+...                    ...++|+ |+||++++|+| +++++++.  +..|||+++|+. +.|||
T Consensus       314 ~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~  391 (534)
T d1v25a_         314 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYY  391 (534)
T ss_dssp             EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBE-ECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCB
T ss_pred             eeeccccccccceeecccCccccccCcccccccccccee-ccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceec
Confidence            578999998652                    2346888 99999999999 88888876  678999999999 99999


Q ss_pred             CCchhhhcccCCCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEE
Q psy4966          59 NKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPA  124 (149)
Q Consensus        59 ~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~  124 (149)
                      ++++.+...|..+|||+|||+|+++++|+++++              +|.|||++|.+||+|.+++|++++++.+|+.++
T Consensus       392 ~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~  471 (534)
T d1v25a_         392 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL  471 (534)
T ss_dssp             TCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEE
T ss_pred             CChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEE
Confidence            999999999989999999999999999999997              999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHhhc
Q psy4966         125 AVVVPKPNSSVTAEEVKQFVEF  146 (149)
Q Consensus       125 a~v~~~~~~~~~~~~l~~~l~~  146 (149)
                      |+|+++.+.....+.++.++++
T Consensus       472 a~vv~~~~~~~~~~~~~~~~~~  493 (534)
T d1v25a_         472 AVVVPRGEKPTPEELNEHLLKA  493 (534)
T ss_dssp             ECC-------------------
T ss_pred             EEEEeCCCCCCHHHHHHHHHHh
Confidence            9998876544444444444544

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.94  E-value=1.4e-26  Score=180.16  Aligned_cols=142  Identities=24%  Similarity=0.270  Sum_probs=125.8

Q ss_pred             eeeeccCCccccc------------ccCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhccc
Q psy4966           2 FLVVGLVGKSKQK------------ATLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEML   68 (149)
Q Consensus         2 ~~~~g~~e~~~~~------------~~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~   68 (149)
                      +..||++|++...            ..+.++ ++++..+.+.| +++++++.|+.|||+|+|+. +.|||+++..+...|
T Consensus       304 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~  381 (514)
T d1amua_         304 INAYGPTETTICATTWVATKETIGHSVPIGA-PIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKF  381 (514)
T ss_dssp             EEEECCGGGSSCSEEEECCSSCCCSSCCCBE-ECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred             EEeeccccCceeeeeccccccccCccccccc-ceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceee
Confidence            5789999987632            234556 88999999999 99999999999999999999 999999999888876


Q ss_pred             C------CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEE
Q psy4966          69 D------DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVV  128 (149)
Q Consensus        69 ~------~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~  128 (149)
                      .      .++||+|||+|++|++|+++|+              +|.+||++|.+||+|.+|+|++.+++..|+.++|+++
T Consensus       382 ~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~  461 (514)
T d1amua_         382 VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV  461 (514)
T ss_dssp             EECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEE
Confidence            3      4689999999999999999997              9999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHhhcc
Q psy4966         129 PKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus       129 ~~~~~~~~~~~l~~~l~~~  147 (149)
                      ++++  .+.++|++++++.
T Consensus       462 ~~~~--~~~~~l~~~~~~~  478 (514)
T d1amua_         462 SEKH--IPLEQLRQFSSEE  478 (514)
T ss_dssp             ESSC--CCHHHHHHHHHHH
T ss_pred             cCCC--CCHHHHHHHHHhh
Confidence            8765  5678888888764

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.3e-27  Score=187.20  Aligned_cols=132  Identities=25%  Similarity=0.229  Sum_probs=111.8

Q ss_pred             eeeeccCCccc------------ccccCcCccccCCceEEEEcCCCCccC-CCCCeeEEEEEc--CC-CccccCCchhhh
Q psy4966           2 FLVVGLVGKSK------------QKATLTGKHFQEHNAIKIIDPVTSVQL-PDGKTGELCLKG--DV-FLGYRNKVEATK   65 (149)
Q Consensus         2 ~~~~g~~e~~~------------~~~~~~g~~p~~~~~~~i~d~~~g~~~-~~g~~Gel~v~~--~~-~~gY~~~~~~~~   65 (149)
                      +..||++|++.            ...+++|+ |+|+++++|+|++++..+ +.+..|||++++  |. +.|||++++.+.
T Consensus       393 ~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~-p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~  471 (640)
T d1ry2a_         393 VDTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYL  471 (640)
T ss_dssp             EECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHH
T ss_pred             EeeecccccccccccccCCCcCCCCCccccc-ccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHH
Confidence            46788888753            34567888 999999999996555544 556789999998  46 999999999998


Q ss_pred             cccC--CCCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEe
Q psy4966          66 EMLD--DDGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVP  129 (149)
Q Consensus        66 ~~~~--~~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~  129 (149)
                      +.|.  .+|||+|||+|++|++|+++|+              +|.|||++|.+||+|.+|+|++++++..|+.++|+|++
T Consensus       472 ~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~  551 (640)
T d1ry2a_         472 DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL  551 (640)
T ss_dssp             HHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEE
T ss_pred             hhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEE
Confidence            8773  4589999999999999999997              99999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy4966         130 KPNSS  134 (149)
Q Consensus       130 ~~~~~  134 (149)
                      +++..
T Consensus       552 ~~~~~  556 (640)
T d1ry2a_         552 KNKSS  556 (640)
T ss_dssp             C----
T ss_pred             cCCCC
Confidence            87643

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=3.9e-24  Score=166.54  Aligned_cols=130  Identities=25%  Similarity=0.444  Sum_probs=116.0

Q ss_pred             ccCcCccccC-CceEEEEcCCCCccCCCCCeeEEEEEcCC-CccccCCchhhhcccCCCCeEEcCceEEEcCCCeEEEE-
Q psy4966          15 ATLTGKHFQE-HNAIKIIDPVTSVQLPDGKTGELCLKGDV-FLGYRNKVEATKEMLDDDGWLHTGDLAYRLPDGTHFII-   91 (149)
Q Consensus        15 ~~~~g~~p~~-~~~~~i~d~~~g~~~~~g~~Gel~v~~~~-~~gY~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~~~i~-   91 (149)
                      ..++|+ |++ +..+.+.+ ++|++++.++.|||+++|+. +.||++++..+...+..++||+|||++++++||+++++ 
T Consensus       350 ~~~~g~-p~~~~~~~~v~~-~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~G  427 (536)
T d1mdba_         350 VNTQGK-PMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEG  427 (536)
T ss_dssp             HHCCCE-ESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             cCCccc-CCCCcceEEEEc-CCCCeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCC
Confidence            456788 775 55555555 89999999999999999999 99999999999999988999999999999999999997 


Q ss_pred             -------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhcc
Q psy4966          92 -------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEFP  147 (149)
Q Consensus        92 -------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~~  147 (149)
                                   +|.+||++|.+||+|.+|+|++.+++..|+.++|+|+++++ ..+.++|+++|+++
T Consensus       428 R~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l~~~l~~~  495 (536)
T d1mdba_         428 RAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRER  495 (536)
T ss_dssp             EGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHHHHHHHHHT
T ss_pred             CcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHHHHHHHHhc
Confidence                         99999999999999999999999999999999999998765 46778899888753

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.87  E-value=3.2e-22  Score=153.74  Aligned_cols=142  Identities=30%  Similarity=0.522  Sum_probs=117.6

Q ss_pred             eeeeccCCcccccc---------cCcCccccCCceEEEEcCCCCccCCCCCeeEEEEEcCC--CccccCCchhhhcccCC
Q psy4966           2 FLVVGLVGKSKQKA---------TLTGKHFQEHNAIKIIDPVTSVQLPDGKTGELCLKGDV--FLGYRNKVEATKEMLDD   70 (149)
Q Consensus         2 ~~~~g~~e~~~~~~---------~~~g~~p~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~~--~~gY~~~~~~~~~~~~~   70 (149)
                      +..||.+|+.....         .+.+. +.+.....+.+ ..++.++.|+.|++.+.+..  ..+|++++..+.+.| .
T Consensus       301 ~~~yg~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~  377 (503)
T d3cw9a1         301 VNIYGTTEAMNSLYMRQPKTGTEMAPGF-FSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-Q  377 (503)
T ss_dssp             EEEEEETTTEEEEEEESCSSSSEEBCCT-TCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-E
T ss_pred             cccccccccceeeeeccccccccccccc-cccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHh-c
Confidence            46788888764221         11222 33334444444 77889999999999988865  888999999998888 6


Q ss_pred             CCeEEcCceEEEcCCCeEEEE--------------ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCC
Q psy4966          71 DGWLHTGDLAYRLPDGTHFII--------------SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVT  136 (149)
Q Consensus        71 ~~~~~TGD~~~~~~~G~~~i~--------------~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  136 (149)
                      +|||+|||+|++++||+++++              +|.+||++|.+||+|.+|+|++.+++.+|+.++|+|+++++...+
T Consensus       378 ~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  457 (503)
T d3cw9a1         378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS  457 (503)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred             CCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCC
Confidence            899999999999999999996              999999999999999999999999999999999999999888899


Q ss_pred             HHHHHHHhhc
Q psy4966         137 AEEVKQFVEF  146 (149)
Q Consensus       137 ~~~l~~~l~~  146 (149)
                      .++|++++++
T Consensus       458 ~~~l~~~~~~  467 (503)
T d3cw9a1         458 ADALDTFCRS  467 (503)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999853

>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}

class: Alpha and beta proteins (a+b)
fold: RuBisCO, small subunit
superfamily: RuBisCO, small subunit
family: RuBisCO, small subunit
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Synechococcus sp., strain pcc 6301 [TaxId: 1131]

Probab=82.28  E-value=1.9  Score=25.42  Aligned_cols=39  Identities=15%  Similarity=0.173  Sum_probs=30.8

Q ss_pred             ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCC
Q psy4966          92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPN  132 (149)
Q Consensus        92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~  132 (149)
                      -+.|||+.+.+||+ .-+-++|. |+....+++.+++-+++
T Consensus        70 Vl~ele~c~~~~p~-~YVRliG~-D~~~q~r~~~fIV~RP~  108 (109)
T d1rbli_          70 VLDEVRECRSEYGD-CYIRVAGF-DNIKECQTSSFIVHRPG  108 (109)
T ss_dssp             HHHHHHHHHHHCTT-SEEEEEEE-ETTTTEEEEEEEEECCC
T ss_pred             HHHHHHHHHHhCCc-CEEEEEEE-eCCCCEEEEEEEEeCCC
Confidence            46789999999997 66667777 45567788899998875

>d2cyya2 d.58.4.2 (A:65-150) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Lrp/AsnC-like transcriptional regulator C-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.34  E-value=3  Score=22.73  Aligned_cols=45  Identities=20%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             ChHHHHHHHhcCCCcccEEEEeeecCCCCCeEEEEEEeCCCCCCCHHHHHHHhhc
Q psy4966          92 SPCELESIFRQHPDVEDVAVIGIPHDVFGELPAAVVVPKPNSSVTAEEVKQFVEF  146 (149)
Q Consensus        92 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~l~~  146 (149)
                      ...++.+.|.++|.|.+|..+..+..     +.+.+..+     +.+++.+++.+
T Consensus        15 ~~~~v~~~l~~~peV~~~~~~tG~~D-----~~~~v~~~-----~~~~l~~~~~~   59 (86)
T d2cyya2          15 KYSEVASNLAKYPEIVEVYETTGDYD-----MVVKIRTK-----NSEELNNFLDL   59 (86)
T ss_dssp             CHHHHHHHHHTCTTEEEEEECSSSSS-----EEEEEEES-----SHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCeEEEEEEcCCCC-----EEEEEEEC-----CHHHHHHHHHH
Confidence            66789999999999999988754322     55555554     44555555543