Psyllid ID: psy4972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK
Secondary Structure (PSIPRED)
ccccccEEEccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccccccEEEEEEEcHHHHHccEEEEEEEccEEEccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEccccccEEEcccEEEEEEccHHHHccccEEEEEEccccEEEEEcccccccccccEEEEccccccccccccccccEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccHHccccccccccccccccccHHHcccccccccccccccccccccccccEEEEEEEEHHHHHcccEEEEEEccEEEccccccccccccccccccccccccEEEEEEEEccccEEEEEEccccccccEEEEEccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccccccEEEEEEEcccccEEEccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEEccccEEccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHcc
Coil and Loop (DISEMBL)
MADTKLYEVLGVSKSASDQEIKKAYRKLAKefhpdknpeagdkfKEISFAYEVLsdekkratydrygiqgikekaggggadfsddLISQLFGgrlfgmggpfgghsrgrphrgedtvhpLKVSLEDlyngkttklqlTKSVICstcngkgsksgatftcascrgcgfkihhriigpnmTQQIQARCSdcqgegevmnekdrcgscagrktlsvKKVLEVNVDKGMKEMQKIYFrgegdqqpdqepgdVIIVLeqkphdrfqrqginlvTTETITLTEALCGFTKVIKhlddrqllithppgevikpedikgivgegmpiyknpyekgtlyikfdvqfpesyfnndaklk
Flexible Loop (DISEMBL)
madtklyevlgvsksasdqeIKKAYRKLAKefhpdknpeagdkfKEISFAYevlsdekkratyDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNgkttklqltksVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEkdrcgscagrktlsvkkvleVNVDKGMKEMQKIYFrgegdqqpdqEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLithppgevikpedikgivgegMPIYKNPYEKGTLYIKFDVQfpesyfnndaklk
Low Complexity Region (SEG)
MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQlfggrlfgmggpfgghsrgrphrgEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK
Disordered region (IsUnstruct)
*********************************************EISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPF****************PLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQ**********RCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYF**************VIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYF*******
Disordered Region (DISOPRED)
MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGI*****************LISQLFGG**************************LKVSLEDLYNGKTTKLQLTKSVICSTCNGKGS*SGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY*********DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYF*******
Disordered Region (DISEMBL)
MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCS**************CGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK
Disordered Region (DISPRO)
***TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPF********HRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNN***LK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q2HJ94	412	DnaJ homolog subfamily A	yes	N/A	0.988	0.837	0.597	1e-112
Q9QYJ0	412	DnaJ homolog subfamily A	yes	N/A	0.988	0.837	0.600	1e-108
O60884	412	DnaJ homolog subfamily A	yes	N/A	0.988	0.837	0.600	1e-108
O35824	412	DnaJ homolog subfamily A	yes	N/A	0.988	0.837	0.597	1e-107
P31689	397	DnaJ homolog subfamily A	no	N/A	0.968	0.851	0.540	9e-97
Q5E954	397	DnaJ homolog subfamily A	no	N/A	0.968	0.851	0.540	1e-96
Q95JF4	397	DnaJ homolog subfamily A	N/A	N/A	0.968	0.851	0.537	1e-96
P63036	397	DnaJ homolog subfamily A	no	N/A	0.968	0.851	0.537	2e-96
P63037	397	DnaJ homolog subfamily A	no	N/A	0.968	0.851	0.537	2e-96
Q5NVI9	396	DnaJ homolog subfamily A	yes	N/A	0.965	0.851	0.540	3e-96

>sp|Q2HJ94|DNJA2_BOVIN DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1

 Score =  406 bits (1043), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/348 (59%), Positives = 260/348 (74%), Gaps = 3/348 (0%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct: 4   VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YDRYG QG++E +GG      DD+ S +FGG LF   G     SR    RGED +HPL
Sbjct: 64  ELYDRYGEQGLREGSGG--GGGMDDIFSHIFGGGLFSFMGN-QSRSRNGRRRGEDMMHPL 120

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct: 121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct: 181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct: 301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

Co-chaperone of Hsc70.
Bos taurus (taxid: 9913)

>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/348 (60%), Positives = 261/348 (75%), Gaps = 3/348 (0%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct: 4   VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YDRYG QG++E +GG      DD+ S +FGG LFG  G     SR    RGED +HPL
Sbjct: 64  ELYDRYGEQGLREGSGG--GGGMDDIFSHIFGGGLFGFMGN-QSRSRNGRRRGEDMMHPL 120

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct: 121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct: 181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct: 301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

Co-chaperone of Hsc70.

Mus musculus (taxid: 10090)

>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/348 (60%), Positives = 261/348 (75%), Gaps = 3/348 (0%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct: 4   VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YDRYG QG++E +GG      DD+ S +FGG LFG  G     SR    RGED +HPL
Sbjct: 64  ELYDRYGEQGLREGSGG--GGGMDDIFSHIFGGGLFGFMGN-QSRSRNGRRRGEDMMHPL 120

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct: 121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct: 181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct: 301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

Co-chaperone of Hsc70.

Homo sapiens (taxid: 9606)

>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/348 (59%), Positives = 260/348 (74%), Gaps = 3/348 (0%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct: 4   VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YDRYG QG++E +GG      DD+ S +FGG LFG  G     SR    RGED +HPL
Sbjct: 64  ELYDRYGEQGLREGSGG--GGGMDDIFSHIFGGGLFGFMGN-QSRSRNGRRRGEDMMHPL 120

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct: 121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct: 181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD+++ +++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct: 301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

Rattus norvegicus (taxid: 10116)

>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2

 Score =  353 bits (907), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 188/348 (54%), Positives = 235/348 (67%), Gaps = 10/348 (2%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           + +T  Y+VLGV  +A+ +E+KKAYRKLA ++HPDKNP  G+KFK+IS AYEVLSD KKR
Sbjct: 2   VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKR 61

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YD+ G Q IKE   GGG     D+    FGG         GG  + R  RG++ VH L
Sbjct: 62  ELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGG---------GGRMQ-RERRGKNVVHQL 111

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
            V+LEDLYNG T KL L K+VIC  C G+G K GA   C +CRG G +I    IGP M Q
Sbjct: 112 SVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQ 171

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           QIQ+ C +CQG GE ++ KDRC SC GRK +  KK+LEV++DKGMK+ QKI F GEGDQ+
Sbjct: 172 QIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQE 231

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD+IIVL+QK H  F R+G +L     I L EALCGF K I  LD+R ++IT  P
Sbjct: 232 PGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHP 291

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+++K  DIK ++ EGMPIY+ PYEKG L I+F V FPE+ F +  KL
Sbjct: 292 GQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKL 339

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Homo sapiens (taxid: 9606)

>sp|Q5E954|DNJA1_BOVIN DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2

 Score =  353 bits (905), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/348 (54%), Positives = 235/348 (67%), Gaps = 10/348 (2%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           + +T  Y+VLGV  +A+ +E+KKAYRKLA ++HPDKNP  G+KFK+IS AYEVLSD KKR
Sbjct: 2   VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKR 61

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YD+ G Q IKE   GGG     D+    FGG         GG  + R  RG++ VH L
Sbjct: 62  ELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGG---------GGRMQ-RERRGKNVVHQL 111

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
            V+LEDLYNG T KL L K+VIC  C G+G K GA   C +CRG G +I    IGP M Q
Sbjct: 112 TVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQ 171

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           QIQ+ C +CQG GE ++ KDRC SC GRK +  KK+LEV++DKGMK+ QKI F GEGDQ+
Sbjct: 172 QIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQE 231

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD+IIVL+QK H  F R+G +L     I L EALCGF K I  LD+R ++IT  P
Sbjct: 232 PGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHP 291

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+++K  DIK ++ EGMPIY+ PYEKG L I+F V FPE+ F +  KL
Sbjct: 292 GQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKL 339

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Bos taurus (taxid: 9913)

>sp|Q95JF4|DNAJ1_CHLAE DnaJ homolog subfamily A member 1 OS=Chlorocebus aethiops GN=DNAJA1 PE=2 SV=1

 Score =  353 bits (905), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/348 (53%), Positives = 235/348 (67%), Gaps = 10/348 (2%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           + +T  Y+VLGV  +A+ +E+KKAYRKLA ++HPDKNP  G+KFK+IS AYEVLSD KKR
Sbjct: 2   VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKR 61

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YD+ G Q IKE   GGG     D+    FGG         GG  + R  RG++ VH L
Sbjct: 62  ELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGG---------GGRMQ-RERRGKNVVHQL 111

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
            V+LEDLYNG T KL L K+VIC  C G+G K GA   C +CRG G +I    IGP M Q
Sbjct: 112 SVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQ 171

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           QIQ+ C +CQG GE ++ KDRC SC GRK +  KK+LEV++DKGMK+ QKI F GEGDQ+
Sbjct: 172 QIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQE 231

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD+IIVL+QK H  F R+G +L     I L EALCGF K I  LD+R ++IT  P
Sbjct: 232 PGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHP 291

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+++K  DIK ++ EGMPIY+ PYEKG L I+F + FPE+ F +  KL
Sbjct: 292 GQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKINFPENGFLSPDKL 339

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Chlorocebus aethiops (taxid: 9534)

>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 187/348 (53%), Positives = 235/348 (67%), Gaps = 10/348 (2%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           + +T  Y+VLGV  +A+ +E+KKAYRKLA ++HPDKNP  G+KFK+IS AYEVL+D KKR
Sbjct: 2   VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKR 61

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YD+ G Q IKE   GGG     D+    FGG         GG  + R  RG++ VH L
Sbjct: 62  ELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGG---------GGRMQ-RERRGKNVVHQL 111

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
            V+LEDLYNG T KL L K+VIC  C G+G K GA   C +CRG G +I    IGP M Q
Sbjct: 112 SVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQ 171

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           QIQ+ C +CQG GE ++ KDRC SC GRK +  KK+LEV++DKGMK+ QKI F GEGDQ+
Sbjct: 172 QIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQE 231

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD+IIVL+QK H  F R+G +L     I L EALCGF K I  LD+R ++IT  P
Sbjct: 232 PGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHP 291

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+++K  DIK ++ EGMPIY+ PYEKG L I+F V FPE+ F +  KL
Sbjct: 292 GQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKL 339

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Rattus norvegicus (taxid: 10116)

>sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 187/348 (53%), Positives = 235/348 (67%), Gaps = 10/348 (2%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           + +T  Y+VLGV  +A+ +E+KKAYRKLA ++HPDKNP  G+KFK+IS AYEVL+D KKR
Sbjct: 2   VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKR 61

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YD+ G Q IKE   GGG     D+    FGG         GG  + R  RG++ VH L
Sbjct: 62  ELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGG---------GGRMQ-RERRGKNVVHQL 111

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
            V+LEDLYNG T KL L K+VIC  C G+G K GA   C +CRG G +I    IGP M Q
Sbjct: 112 SVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQ 171

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           QIQ+ C +CQG GE ++ KDRC SC GRK +  KK+LEV++DKGMK+ QKI F GEGDQ+
Sbjct: 172 QIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQE 231

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD+IIVL+QK H  F R+G +L     I L EALCGF K I  LD+R ++IT  P
Sbjct: 232 PGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHP 291

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+++K  DIK ++ EGMPIY+ PYEKG L I+F V FPE+ F +  KL
Sbjct: 292 GQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKL 339

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Mus musculus (taxid: 10090)

>sp|Q5NVI9|DNJA1_PONAB DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1

 Score =  352 bits (902), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/348 (54%), Positives = 234/348 (67%), Gaps = 11/348 (3%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           + +T  Y+VLGV  +A+ +E+KKAYRKLA ++HPDKNP  G+KFK+IS AYEVLSD KKR
Sbjct: 2   VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKR 61

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YD+ G Q IKE   GGG     D+    FGG         G   R R  RG++ VH L
Sbjct: 62  ELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGG---------GRMQRER--RGKNVVHQL 110

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
            V+LEDLYNG T KL L K+VIC  C G+G K GA   C +CRG G +I    IGP M Q
Sbjct: 111 SVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQ 170

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           QIQ+ C +CQG GE ++ KDRC SC GRK +  KK+LEV++DKGMK+ QKI F GEGDQ+
Sbjct: 171 QIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQE 230

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD+IIVL+QK H  F R+G +L     I L EALCGF K I  LD+R ++IT  P
Sbjct: 231 PGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHP 290

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+++K  DIK ++ EGMPIY+ PYEKG L I+F V FPE+ F +  KL
Sbjct: 291 GQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKL 338

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
255652879	408	DnaJ (Hsp40) homolog 1 [Bombyx mori] gi|	0.991	0.848	0.631	1e-120
91081923	406	PREDICTED: similar to DnaJ (Hsp40) homol	0.985	0.847	0.633	1e-119
241622326	412	molecular chaperone, putative [Ixodes sc	0.994	0.842	0.591	1e-117
321475384	409	hypothetical protein DAPPUDRAFT_187536 [	0.988	0.843	0.612	1e-115
357617273	404	DnaJ-like protein 1 [Danaus plexippus]	0.985	0.851	0.618	1e-114
427789721	408	Putative molecular chaperone dnaj superf	0.994	0.850	0.612	1e-114
296531420	413	dnaJ homolog subfamily A member 2-like [	0.991	0.837	0.595	1e-113
57524857	411	dnaJ homolog subfamily A member 2 [Gallu	0.985	0.836	0.601	1e-113
148227640	410	DnaJ subfamily A member 2 [Xenopus laevi	0.982	0.836	0.587	1e-111
327276413	411	PREDICTED: dnaJ homolog subfamily A memb	0.988	0.839	0.597	1e-111

>gi|255652879|ref|NP_001157380.1| DnaJ (Hsp40) homolog 1 [Bombyx mori] gi|253721943|gb|ACT34035.1| DnaJ-1 [Bombyx mori] gi|378465681|gb|AFC01215.1| DnaJ-1 [Bombyx mori]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/350 (63%), Positives = 266/350 (76%), Gaps = 4/350 (1%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           MAD KLYE+LGVSK+AS+ EIK+ Y KLAKEFHPDKNP AGDKFKEIS+AYEVLSD KKR
Sbjct: 1   MADNKLYEILGVSKNASESEIKRNYHKLAKEFHPDKNPAAGDKFKEISYAYEVLSDPKKR 60

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFG-GHSRGRPHRGEDTVHP 119
             YD YG++G++E   G    F  D I   F G LFGMGG  G G  RG P RGEDT+HP
Sbjct: 61  QVYDLYGLKGLQEGGQG--GGFPADEIFGNFFGNLFGMGGSRGCGQGRG-PVRGEDTMHP 117

Query: 120 LKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMT 179
           L V+LEDLY GKTTKLQL+K+VIC+ C G G K G+  +C  CRG G K+ ++ I P+MT
Sbjct: 118 LAVTLEDLYAGKTTKLQLSKNVICAHCKGVGGKPGSLISCKDCRGQGIKVSYQQIAPHMT 177

Query: 180 QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ 239
           +Q  +RC  C G+GE  NEKD+C  C G+K L+  K+LEV+++KGM++ QKIYFRGEGDQ
Sbjct: 178 RQFHSRCPSCLGQGETFNEKDKCSKCKGKKVLNETKILEVHIEKGMRDNQKIYFRGEGDQ 237

Query: 240 QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 299
           QPD EPGDVIIVL+QKPH++F+R G NL+    ITLTEALCGF  V KHLD R LLI H 
Sbjct: 238 QPDTEPGDVIIVLQQKPHEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHL 297

Query: 300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
           PGEVIKP D+K + GEGMPIYKN +EKG  Y+KFDV FPE++F N+ +LK
Sbjct: 298 PGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKFDVVFPENHFANEEQLK 347

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081923|ref|XP_970724.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily A, member 2 [Tribolium castaneum] gi|270007352|gb|EFA03800.1| hypothetical protein TcasGA2_TC013913 [Tribolium castaneum]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/349 (63%), Positives = 271/349 (77%), Gaps = 5/349 (1%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           MAD KLYE LGVS++ASD EIKK YRKLAKEFHPDKNPEAGDKFKEIS+AYEVLSD KKR
Sbjct: 1   MADNKLYETLGVSRNASDSEIKKNYRKLAKEFHPDKNPEAGDKFKEISYAYEVLSDPKKR 60

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YD+YG++G++E A  G A   D L S LFGG LFG  G   G    R H+GEDTVHPL
Sbjct: 61  QIYDKYGLKGMQEGAQDGFA--GDSLFSHLFGGGLFGGFG---GFPHRRRHKGEDTVHPL 115

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           KVSLEDLYNGKT+KLQL+K+VIC+ CNGKG +S     C  C+G GFK+ +  I P M Q
Sbjct: 116 KVSLEDLYNGKTSKLQLSKNVICAACNGKGGRSENFEQCPGCKGRGFKVTYHQIAPGMAQ 175

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           Q+QA CSDC G+G ++ EKDRC +C G+K  +  K+LEV++DKGMK+ QKI+FRGEGDQQ
Sbjct: 176 QVQAECSDCHGDGVMIKEKDRCTTCKGKKVCNETKILEVHIDKGMKDGQKIFFRGEGDQQ 235

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           PD EPGDVII+L +K H+ FQR G +L+   TI+LTEALCGF+ V++ LD R LLI HPP
Sbjct: 236 PDIEPGDVIIILNEKSHETFQRSGDDLLMNRTISLTEALCGFSFVLRQLDGRDLLIKHPP 295

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
           G+++KP D+K ++GEGMP+YKNP+EKG LYI F++ FPES F ++  LK
Sbjct: 296 GDIVKPGDLKAVMGEGMPMYKNPFEKGNLYITFEITFPESNFADEKTLK 344

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241622326|ref|XP_002408934.1| molecular chaperone, putative [Ixodes scapularis] gi|215503078|gb|EEC12572.1| molecular chaperone, putative [Ixodes scapularis]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/350 (59%), Positives = 268/350 (76%), Gaps = 3/350 (0%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           M+D KLY+VLGVS++A++ EIKKAYR+LAKE+HPDKNP+ G+KFKEISFAYEVL+D KKR
Sbjct: 1   MSDGKLYDVLGVSRNATEHEIKKAYRRLAKEYHPDKNPQEGEKFKEISFAYEVLTDPKKR 60

Query: 61  ATYDRYGIQGIKEKAGGGGADF-SDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHP 119
             Y+ YGI G+KE  G   + F ++D+ SQ+FGG  FG      G SR R  RGEDTVHP
Sbjct: 61  EIYNTYGINGLKE--GVHESPFATEDIFSQIFGGSPFGSMFGMDGSSRRRRQRGEDTVHP 118

Query: 120 LKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMT 179
           LKVSLED YNGKT KL++  +VIC TC+G G +SG+   C  CRG G K+  + +GPNM 
Sbjct: 119 LKVSLEDFYNGKTIKLEVDHTVICKTCDGLGGRSGSVLVCHGCRGRGIKVTFKHLGPNMM 178

Query: 180 QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ 239
           QQ+Q+ C DC+G+GEV+NEKD C +C GRK +   K LEV+VDKGM++ ++I F+GEGDQ
Sbjct: 179 QQMQSTCPDCRGDGEVINEKDACKTCKGRKVIKEIKYLEVHVDKGMRDNERIIFKGEGDQ 238

Query: 240 QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 299
           QP  E GDV+I+L+ KPH+ F R+G NL  + ++TLTEALCGF  V+KHLD R ++I HP
Sbjct: 239 QPGVETGDVVIILQTKPHELFHREGSNLFMSHSVTLTEALCGFEMVLKHLDGRDIVIKHP 298

Query: 300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
           PG VIKP  +KGI GEGMP+Y++P+EKG LYIKFDV FP+++F ++  LK
Sbjct: 299 PGSVIKPRSMKGIRGEGMPVYRDPFEKGNLYIKFDVVFPDNHFADEVALK 348

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321475384|gb|EFX86347.1| hypothetical protein DAPPUDRAFT_187536 [Daphnia pulex]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/348 (61%), Positives = 268/348 (77%), Gaps = 3/348 (0%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           MAD  LYE+LGV   A+D E+KKAYRKLAKEFHPDKNPEAG+KFKEISFAYEVLSD KKR
Sbjct: 1   MADNALYEILGVPTKATDAELKKAYRKLAKEFHPDKNPEAGEKFKEISFAYEVLSDPKKR 60

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YDR+G++G++E     G   +DD++S  FGG LFG  G     +R    RGEDTVHPL
Sbjct: 61  EVYDRHGLKGLQEGVHEHGGFGADDILSHFFGGGLFGGMGGGRRKTR---QRGEDTVHPL 117

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           KV+LEDLYNGKT+KLQL+K+VIC+ C+G+G K GA  TCA+C+G G KI  R +GP M Q
Sbjct: 118 KVTLEDLYNGKTSKLQLSKNVICALCSGQGGKPGANVTCATCQGRGIKISLRPLGPGMMQ 177

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           QIQ+ CS C GEGE++NE+DRC +C G+K  +  K+LEV+VDKGMK+ QKI FRGEGDQQ
Sbjct: 178 QIQSVCSTCNGEGEMINERDRCKACKGKKVQNETKILEVHVDKGMKDGQKILFRGEGDQQ 237

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  E GDV+I+L+QKPH++F+RQG +L    TITLTEALCGF  V+KHLD R L+I   P
Sbjct: 238 PGVEAGDVVIILQQKPHEKFKRQGDDLCVMHTITLTEALCGFCYVLKHLDGRDLVIRQAP 297

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G V++P   K + GEGMP Y++P+EKG L+IKFDV+FP S+F +++ +
Sbjct: 298 GNVVEPGSTKMVPGEGMPRYRSPFEKGELFIKFDVEFPSSHFADESTI 345

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617273|gb|EHJ70691.1| DnaJ-like protein 1 [Danaus plexippus]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/349 (61%), Positives = 263/349 (75%), Gaps = 5/349 (1%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           MAD KLYE+LGVS+SASD EIK+ Y KLAKEFHPDKNP AGD+FKEIS+AYEVLSD KKR
Sbjct: 1   MADNKLYEILGVSRSASDSEIKRNYHKLAKEFHPDKNPAAGDRFKEISYAYEVLSDPKKR 60

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
            TYD+YG++G++E   GGG    D     LFG     + G  G        RGEDT+HPL
Sbjct: 61  QTYDKYGLKGLQEGGQGGGFPGED-----LFGHIFGDIFGMGGSGRGRGRARGEDTIHPL 115

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           KV+LED+Y GKTTKLQL+K+VIC  C G+G K G+   C  C G G K+ ++ IG NMT+
Sbjct: 116 KVTLEDMYVGKTTKLQLSKNVICGPCKGEGGKPGSVIPCKECHGQGIKVWYQQIGANMTR 175

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           Q Q RC  CQG+GE +NEKD+C  C G+K L+  K+LEV+V+KGM+E QKI+FRGEGDQ 
Sbjct: 176 QCQTRCPACQGQGETINEKDKCPKCKGKKVLNETKILEVHVEKGMRENQKIFFRGEGDQM 235

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           PD +PGDVIIVL+QKPHD F+R G +L+    ITLTEALCGF  V+KHLD R LL+ H P
Sbjct: 236 PDTQPGDVIIVLQQKPHDVFKRTGDDLLMVREITLTEALCGFEFVVKHLDGRDLLVRHLP 295

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
           GEVIKP D+KGI GEGMP +KNP+EKG LYIKFDV FP+++F N+ +LK
Sbjct: 296 GEVIKPGDLKGIQGEGMPQHKNPFEKGNLYIKFDVTFPDNHFANEEQLK 344

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789721|gb|JAA60312.1| Putative molecular chaperone dnaj superfamily [Rhipicephalus pulchellus]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/351 (61%), Positives = 264/351 (75%), Gaps = 4/351 (1%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           M+D KLY+VLGVS++A++ EIKKAYRKLAKE+HPDKNP+ G+KFKEISFAYEVL+D KKR
Sbjct: 1   MSDGKLYDVLGVSRNATEYEIKKAYRKLAKEYHPDKNPQEGEKFKEISFAYEVLTDPKKR 60

Query: 61  ATYDRYGIQGIKEKAGGGGADF-SDDLISQLFGGR-LFGMGGPFGGHSRGRPHRGEDTVH 118
             Y+ YGI G+KE  G   + F ++D+ S +FGG    GM G  G   R R  RGEDT+H
Sbjct: 61  EIYNTYGINGLKE--GVHESPFGTEDIFSHIFGGSPFGGMFGMGGSSGRRRRQRGEDTIH 118

Query: 119 PLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNM 178
           PLKVSLED YNGKT KLQ+  +VIC TC G G ++G+  TC SCRG G K+  + IGPNM
Sbjct: 119 PLKVSLEDFYNGKTVKLQVDHTVICKTCEGVGGRTGSVLTCQSCRGQGIKVTFKHIGPNM 178

Query: 179 TQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGD 238
            QQ+Q+ C DC+G+GEV+NEKD C SC GRK L   K +EVN+DKGM++ ++I FRGEGD
Sbjct: 179 MQQMQSTCPDCRGDGEVINEKDACKSCKGRKVLKEVKYIEVNIDKGMRDNERIVFRGEGD 238

Query: 239 QQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITH 298
           Q P  EPGD++IVL+ KPH+ F R G NL  T T++LTEALCGF  V+KHLD R L+I  
Sbjct: 239 QLPGVEPGDIVIVLQTKPHEVFHRDGCNLYMTHTVSLTEALCGFEMVLKHLDGRDLVIRE 298

Query: 299 PPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
            PG VIKP  IKGI GEGMPIY+NP EKG LYIKFDV+FPE++F  +  LK
Sbjct: 299 VPGMVIKPRSIKGIRGEGMPIYRNPLEKGNLYIKFDVEFPENHFAGEEALK 349

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296531420|ref|NP_001171852.1| dnaJ homolog subfamily A member 2-like [Saccoglossus kowalevskii]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/356 (59%), Positives = 263/356 (73%), Gaps = 10/356 (2%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           MAD  LY+VL VSK+ASD EIKKAYRKLAKEFHPDKNP+ GDKFKEISFAYEVLS+ +KR
Sbjct: 1   MADVDLYKVLRVSKNASDGEIKKAYRKLAKEFHPDKNPDHGDKFKEISFAYEVLSNPEKR 60

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHS-------RGRPHRG 113
           +TYD YGI+GI+ +AG G AD   D+ S LFGG + G                R R  RG
Sbjct: 61  STYDSYGIEGIRGEAGPGSAD---DIFSHLFGGGMGGGLFGGFPGFGGGGGGGRRRKQRG 117

Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRI 173
           EDTVHPL+V+LEDLYNGK +KLQL+K+VIC  CNG+G K+GA  TC  C G G K+  R 
Sbjct: 118 EDTVHPLRVTLEDLYNGKMSKLQLSKNVICRVCNGEGGKTGALQTCRICHGRGVKVTIRQ 177

Query: 174 IGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYF 233
           + P M QQ+Q+ C+DC GEGE +NEKDRC +C GRK +   K+L+V+VDKGMK+ QKI F
Sbjct: 178 LAPGMVQQMQSMCTDCNGEGETINEKDRCKTCHGRKVIKESKILQVHVDKGMKDGQKITF 237

Query: 234 RGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQ 293
           R EGDQQP  EPGDVIIVL+Q+ HD FQR G++L  + +I L EALCGF   + HLD R+
Sbjct: 238 RWEGDQQPGLEPGDVIIVLQQREHDVFQRDGLDLYMSYSIGLAEALCGFQISVTHLDGRR 297

Query: 294 LLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
           LL+   PG VI P  ++ IVGEG P+YK+P+EKG LYIKF++++PE+ F ++ KLK
Sbjct: 298 LLVKSAPGGVINPGSMRAIVGEGFPVYKSPFEKGNLYIKFEIKWPENNFADENKLK 353

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|57524857|ref|NP_001005841.1| dnaJ homolog subfamily A member 2 [Gallus gallus] gi|53134035|emb|CAG32296.1| hypothetical protein RCJMB04_22f12 [Gallus gallus]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/349 (60%), Positives = 262/349 (75%), Gaps = 5/349 (1%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           +ADTKLY++LGV   ASD E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct: 4   VADTKLYDILGVPPGASDNELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFG-MGGPFGGHSRGRPHRGEDTVHP 119
             YDRYG QG++E  G GG+   DD+ S +FGG LF  MGG     SR    RGED +HP
Sbjct: 64  ELYDRYGEQGLRE--GSGGSSGMDDIFSHIFGGGLFNFMGGQS--RSRNGRRRGEDMMHP 119

Query: 120 LKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMT 179
           LKVSLEDLYNGKTTKLQL+K+V+CS CNG+G K+GA   C +CRG G +I  R + P M 
Sbjct: 120 LKVSLEDLYNGKTTKLQLSKNVLCSACNGQGGKAGAVQKCNACRGRGVRIMIRQLAPGMV 179

Query: 180 QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ 239
           QQ+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ
Sbjct: 180 QQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFSGEADQ 239

Query: 240 QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 299
            P  EPGD++++L++K ++ FQR G +L  T  I L EALCGF    KHLD RQ+++ +P
Sbjct: 240 APGVEPGDIVLLLQEKENEVFQRDGNDLHMTHKIGLVEALCGFQFTFKHLDGRQIVVKYP 299

Query: 300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           PG+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + +  KL
Sbjct: 300 PGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWISPEKL 348

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148227640|ref|NP_001080625.1| DnaJ subfamily A member 2 [Xenopus laevis] gi|32450159|gb|AAH53791.1| Dnaja2-prov protein [Xenopus laevis]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/349 (58%), Positives = 260/349 (74%), Gaps = 6/349 (1%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           + DTKLY++LGV   AS+ ++KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct: 4   VVDTKLYDILGVLPGASENDLKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFG-MGGPFGGHSRGRPHRGEDTVHP 119
             YDRYG QG++E +GG G D   D+ S +FGG LFG MGG     SR    RGED +HP
Sbjct: 64  EQYDRYGEQGLREGSGGSGMD---DIFSHIFGGSLFGFMGGQS--RSRNGRRRGEDMMHP 118

Query: 120 LKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMT 179
           LKVSLEDLYNGKTTKLQL+K+V+CS+CNG+G K+GA   C++CRG G ++  R + P M 
Sbjct: 119 LKVSLEDLYNGKTTKLQLSKNVLCSSCNGQGGKTGAVQKCSACRGRGVRVMIRQLAPGMV 178

Query: 180 QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ 239
           QQ+Q+ CSDC GEGEV+NEKDRC  C G K +   K++EV+VDKGMK  Q+I F GE  Q
Sbjct: 179 QQMQSVCSDCNGEGEVINEKDRCKKCEGSKVIKEVKIIEVHVDKGMKHGQRITFSGEAVQ 238

Query: 240 QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 299
            P  EPGD+++VL++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +P
Sbjct: 239 APGVEPGDIVLVLQEKDHEVFQRDGNDLHMTHKIGLVEALCGFQFTFKHLDARQIVVKYP 298

Query: 300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
            G+VI+P  ++ + GEGMP Y+NP+EKG L+IKFDV FPE+ + N  KL
Sbjct: 299 AGKVIEPGSVRVVRGEGMPQYRNPFEKGDLFIKFDVVFPENNWINPEKL 347

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327276413|ref|XP_003222964.1| PREDICTED: dnaJ homolog subfamily A member 2-like [Anolis carolinensis]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/348 (59%), Positives = 260/348 (74%), Gaps = 3/348 (0%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           +ADTKLY++LGV   ASD E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct: 4   VADTKLYDILGVPPGASDNELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query: 61  ATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
             YDRYG QG++E +GG  +   DD+ S +FGG LF   G     SR    RGED +HPL
Sbjct: 64  ELYDRYGEQGLREGSGG--SGGMDDIFSHIFGGGLFSFMGN-QSRSRNGRRRGEDMMHPL 120

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           KVSLEDLYNGKTTKLQL+K+V+CS CNG+G KSGA   CA+CRG G +I  R + P M Q
Sbjct: 121 KVSLEDLYNGKTTKLQLSKNVLCSACNGQGGKSGAVQKCAACRGRGVRIMIRQLAPGMVQ 180

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
           Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct: 181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
           P  EPGD++++L++K ++ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct: 241 PGVEPGDIVLLLQEKENEVFQRDGNDLHMTHKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
           G+VI+P  ++ +  EGMP Y+NP+EKG LYIKFDVQFPE+ + +  KL
Sbjct: 301 GKVIEPGSVRVVRAEGMPQYRNPFEKGDLYIKFDVQFPENNWISPEKL 348

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
ZFIN|ZDB-GENE-040426-2884	412	dnaja2 "DnaJ (Hsp40) homolog,	0.994	0.842	0.567	1.2e-106
UNIPROTKB|Q2HJ94	412	DNAJA2 "DnaJ homolog subfamily	0.988	0.837	0.574	5.1e-106
UNIPROTKB|O60884	412	DNAJA2 "DnaJ homolog subfamily	0.988	0.837	0.574	6.5e-106
UNIPROTKB|F1RP05	412	LOC100521133 "Uncharacterized	0.988	0.837	0.574	6.5e-106
MGI|MGI:1931882	412	Dnaja2 "DnaJ (Hsp40) homolog,	0.988	0.837	0.574	8.3e-106
UNIPROTKB|Q5M9H7	412	Dnaja2 "DnaJ homolog subfamily	0.988	0.837	0.574	8.3e-106
RGD|71001	412	Dnaja2 "DnaJ (Hsp40) homolog,	0.988	0.837	0.571	2.8e-105
UNIPROTKB|E2R7F3	413	DNAJA2 "Uncharacterized protei	0.988	0.835	0.573	5.8e-105
ZFIN|ZDB-GENE-030131-2884	413	dnaja2l "DnaJ (Hsp40) homolog,	0.994	0.840	0.568	2e-104
UNIPROTKB|E1BR43	411	DNAJA2 "Uncharacterized protei	0.979	0.832	0.544	2.8e-98

ZFIN|ZDB-GENE-040426-2884 dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Danio rerio (taxid:7955)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 198/349 (56%), Positives = 254/349 (72%)

Query:     1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
             +ADTKLY++LGVS SAS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVL++ +KR
Sbjct:     4 VADTKLYDILGVSPSASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLTNPEKR 63

Query:    61 ATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPL 120
               YDRYG QG++E   GGG    DD+ S                         ED VHPL
Sbjct:    64 DMYDRYGEQGLREGGCGGGG--MDDIFSHIFGGGLFGFMGGQGRSRNGGRRRGEDMVHPL 121

Query:   121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
             KVSLEDLYNGKTTKLQL+K+V+CSTCNG+G KSGA   C +CRG G +I  R +GP M Q
Sbjct:   122 KVSLEDLYNGKTTKLQLSKNVLCSTCNGQGGKSGAVQKCTACRGRGMRIMIRQLGPGMVQ 181

Query:   181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
             Q+Q+ C+DC GEGEV++EKDRC  C G+K +   K+LEV+VDKGMK  QKI F GE DQ 
Sbjct:   182 QMQSVCTDCNGEGEVISEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQKITFGGEADQS 241

Query:   241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
             P  EPGD+++VL++K H+ ++R+G +L  T  I L EALCGF   +KHLD RQ+++ +P 
Sbjct:   242 PGVEPGDIVLVLQEKEHETYRREGNDLHMTHKIGLVEALCGFHFTLKHLDGRQIVVKYPA 301

Query:   301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
             G++I+P  ++ + GEGMP Y+NP+EKG L+IKFDVQFP++ + +  KLK
Sbjct:   302 GKIIEPGSVRVVRGEGMPQYRNPFEKGDLFIKFDVQFPDNNWLSPEKLK 350

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q2HJ94 DNAJA2 "DnaJ homolog subfamily A member 2" [Bos taurus (taxid:9913)]

 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 200/348 (57%), Positives = 251/348 (72%)

Query:     1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
             +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct:     4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query:    61 ATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPL 120
               YDRYG QG++E +GGGG    DD+ S                         ED +HPL
Sbjct:    64 ELYDRYGEQGLREGSGGGGG--MDDIFSHIFGGGLFSFMGNQSRSRNGRRRG-EDMMHPL 120

Query:   121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
             KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct:   121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query:   181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
             Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct:   181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query:   241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query:   301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O60884 DNAJA2 "DnaJ homolog subfamily A member 2" [Homo sapiens (taxid:9606)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 200/348 (57%), Positives = 251/348 (72%)

Query:     1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
             +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct:     4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query:    61 ATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPL 120
               YDRYG QG++E +GGGG    DD+ S                         ED +HPL
Sbjct:    64 ELYDRYGEQGLREGSGGGGG--MDDIFSHIFGGGLFGFMGNQSRSRNGRRRG-EDMMHPL 120

Query:   121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
             KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct:   121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query:   181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
             Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct:   181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query:   241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query:   301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

UNIPROTKB|F1RP05 LOC100521133 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 200/348 (57%), Positives = 251/348 (72%)

Query:     1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
             +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct:     4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query:    61 ATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPL 120
               YDRYG QG++E +GGGG    DD+ S                         ED +HPL
Sbjct:    64 ELYDRYGEQGLREGSGGGGG--MDDIFSHIFGGGLFGFMGNQSRSRNGRRKG-EDMMHPL 120

Query:   121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
             KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct:   121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query:   181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
             Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct:   181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query:   241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPP 300

Query:   301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1931882 Dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Mus musculus (taxid:10090)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 200/348 (57%), Positives = 251/348 (72%)

Query:     1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
             +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct:     4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query:    61 ATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPL 120
               YDRYG QG++E +GGGG    DD+ S                         ED +HPL
Sbjct:    64 ELYDRYGEQGLREGSGGGGG--MDDIFSHIFGGGLFGFMGNQSRSRNGRRRG-EDMMHPL 120

Query:   121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
             KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct:   121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query:   181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
             Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct:   181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query:   241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query:   301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q5M9H7 Dnaja2 "DnaJ homolog subfamily A member 2" [Rattus norvegicus (taxid:10116)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 200/348 (57%), Positives = 251/348 (72%)

Query:     1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
             +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct:     4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query:    61 ATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPL 120
               YDRYG QG++E +GGGG    DD+ S                         ED +HPL
Sbjct:    64 ELYDRYGEQGLREGSGGGGG--MDDIFSHIFGGGLFGFMGNQSRSRNGRRRG-EDMMHPL 120

Query:   121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
             KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct:   121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query:   181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
             Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct:   181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query:   241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
             P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query:   301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

RGD|71001 Dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 199/348 (57%), Positives = 250/348 (71%)

Query:     1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
             +ADTKLY++LGV   AS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR
Sbjct:     4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63

Query:    61 ATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPL 120
               YDRYG QG++E +GGGG    DD+ S                         ED +HPL
Sbjct:    64 ELYDRYGEQGLREGSGGGGG--MDDIFSHIFGGGLFGFMGNQSRSRNGRRRG-EDMMHPL 120

Query:   121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
             KVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M Q
Sbjct:   121 KVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQ 180

Query:   181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
             Q+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ 
Sbjct:   181 QMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQA 240

Query:   241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
             P  EPGD+++ +++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PP
Sbjct:   241 PGVEPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPP 300

Query:   301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             G+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct:   301 GKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 348

GO:0001948 "glycoprotein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0018885 "carbon tetrachloride metabolic process" evidence=IEP

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|E2R7F3 DNAJA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 200/349 (57%), Positives = 251/349 (71%)

Query:     1 MADTKLYEVLGVSKSASDQEIKK-AYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKK 59
             +ADTKLY++LGV   AS+ E+KK AYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +K
Sbjct:     4 VADTKLYDILGVPPGASENELKKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEK 63

Query:    60 RATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHP 119
             R  YDRYG QG++E +GGGG    DD+ S                         ED +HP
Sbjct:    64 RELYDRYGEQGLREGSGGGGG--MDDIFSHIFGGGLFGFMGNQSRSRNGRRRG-EDMMHP 120

Query:   120 LKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMT 179
             LKVSLEDLYNGKTTKLQL+K+V+CS C+G+G KSGA   C++CRG G +I  R + P M 
Sbjct:   121 LKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMV 180

Query:   180 QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ 239
             QQ+Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ
Sbjct:   181 QQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQ 240

Query:   240 QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP 299
              P  EPGD++++L++K H+ FQR G +L  T  I L EALCGF    KHLD RQ+++ +P
Sbjct:   241 APGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYP 300

Query:   300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             PG+VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + N  KL
Sbjct:   301 PGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKL 349

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-2884 dnaja2l "DnaJ (Hsp40) homolog, subfamily A, member 2, like" [Danio rerio (taxid:7955)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 198/348 (56%), Positives = 249/348 (71%)

Query:     1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
             +ADTKLY++LGVS SAS+ E+KKAYRKLAKE+HPDKNP AGDKFKEISFAYEVL++ +K+
Sbjct:     4 VADTKLYDLLGVSPSASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLTNPEKK 63

Query:    61 ATYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPL 120
               YDRYG QG++E  GGGGA   D                             ED +HPL
Sbjct:    64 DLYDRYGEQGLRE-GGGGGAGMEDIFSHIFGGGLFGFMGGQSSKSRNGGRRRGEDMIHPL 122

Query:   121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
             KVSLEDLYNGKTTKLQL+K+V+CS CNG+G K+GA   C++CRG G +I  R + P M Q
Sbjct:   123 KVSLEDLYNGKTTKLQLSKNVLCSACNGQGGKTGAVQKCSTCRGRGMRIMIRQLAPGMVQ 182

Query:   181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
             Q+Q+ C+DC GEGEV++EKDRC  C GRK     KVLEV+VDKGMK  QKI F GE DQ 
Sbjct:   183 QMQSVCTDCNGEGEVIHEKDRCKECDGRKVCKEVKVLEVHVDKGMKHGQKITFSGEADQS 242

Query:   241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
             P+ EPGD+I+VL++K H+ F+R G +L     I L EALCGF  ++ HLD R L+I +PP
Sbjct:   243 PNTEPGDIILVLQEKDHEEFRRDGNDLHIGHKIGLVEALCGFQFMLTHLDGRHLVIKYPP 302

Query:   301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             G+V++P  I+ + GEGMP Y+NP+EKG L+IKFDVQFPE+ + +  KL
Sbjct:   303 GKVVEPGSIRVVRGEGMPQYRNPFEKGDLFIKFDVQFPENGWISTEKL 350

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BR43 DNAJA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 189/347 (54%), Positives = 242/347 (69%)

Query:     4 TKLYEVLGVSKSASDQE--IKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRA 61
             T+ +EV+G     S+    ++KAYRKLAKE+HPDKNP AGDKFKEISFAYEVLS+ +KR 
Sbjct:     5 TEYFEVIGQDGVGSNVSLLVRKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRE 64

Query:    62 TYDRYGIQGIKEKAGGGGADFSDDLISQXXXXXXXXXXXXXXXXXXXXXXXXEDTVHPLK 121
              YDRYG QG++E  G GG+   DD+ S                         ED +HPLK
Sbjct:    65 LYDRYGEQGLRE--GSGGSSGMDDIFSHIFGGGLFNFMGGQSRSRNGRRRG-EDMMHPLK 121

Query:   122 VSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQ 181
             VSLEDLYNGKTTKLQL+K+V+CS CNG+G K+GA   C +CRG G +I  R + P M QQ
Sbjct:   122 VSLEDLYNGKTTKLQLSKNVLCSACNGQGGKAGAVQKCNACRGRGVRIMIRQLAPGMVQQ 181

Query:   182 IQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQP 241
             +Q+ CSDC GEGEV+NEKDRC  C G+K +   K+LEV+VDKGMK  Q+I F GE DQ P
Sbjct:   182 MQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFSGEADQAP 241

Query:   242 DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPG 301
               EPGD++++L++K ++ FQR G +L  T  I L EALCGF    KHLD RQ+++ +PPG
Sbjct:   242 GVEPGDIVLLLQEKENEVFQRDGNDLHMTHKIGLVEALCGFQFTFKHLDGRQIVVKYPPG 301

Query:   302 EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             +VI+P  ++ + GEGMP Y+NP+EKG LYIKFDVQFPE+ + +  KL
Sbjct:   302 KVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWISPEKL 348

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1MN12	DNAJ_RHIL3	No assigned EC number	0.3474	0.9226	0.8586	yes	N/A
A6UEY1	DNAJ_SINMW	No assigned EC number	0.3438	0.9025	0.84	yes	N/A
O27352	DNAJ_METTH	No assigned EC number	0.3732	0.9312	0.8643	yes	N/A
Q9JMC3	DNJA4_MOUSE	No assigned EC number	0.5329	0.9684	0.8513	no	N/A
Q98DD2	DNAJ_RHILO	No assigned EC number	0.3577	0.9369	0.8696	yes	N/A
Q95JF4	DNAJ1_CHLAE	No assigned EC number	0.5373	0.9684	0.8513	N/A	N/A
O60884	DNJA2_HUMAN	No assigned EC number	0.6005	0.9885	0.8373	yes	N/A
Q92T07	DNAJ_RHIME	No assigned EC number	0.3342	0.9025	0.8311	yes	N/A
P43644	DNJH_ATRNU	No assigned EC number	0.5228	0.9598	0.8033	N/A	N/A
Q5NPS5	DNAJ_ZYMMO	No assigned EC number	0.3389	0.9140	0.8506	yes	N/A
A9KKT9	DNAJ_CLOPH	No assigned EC number	0.3575	0.9656	0.8845	yes	N/A
P31689	DNJA1_HUMAN	No assigned EC number	0.5402	0.9684	0.8513	no	N/A
B2IBR5	DNAJ_BEII9	No assigned EC number	0.3477	0.9255	0.8682	yes	N/A
B9JGW2	DNAJ_AGRRK	No assigned EC number	0.3531	0.9340	0.8534	yes	N/A
Q3B2T5	DNAJ_PELLD	No assigned EC number	0.3844	0.9398	0.8586	yes	N/A
P63036	DNJA1_RAT	No assigned EC number	0.5373	0.9684	0.8513	no	N/A
P63037	DNJA1_MOUSE	No assigned EC number	0.5373	0.9684	0.8513	no	N/A
Q5E954	DNJA1_BOVIN	No assigned EC number	0.5402	0.9684	0.8513	no	N/A
Q11KJ5	DNAJ_MESSB	No assigned EC number	0.3418	0.9455	0.8823	yes	N/A
O35824	DNJA2_RAT	No assigned EC number	0.5977	0.9885	0.8373	yes	N/A
A8IPT0	DNAJ_AZOC5	No assigned EC number	0.3380	0.9340	0.8556	yes	N/A
Q6G1F8	DNAJ_BARQU	No assigned EC number	0.3391	0.9169	0.8421	yes	N/A
Q2KDW7	DNAJ_RHIEC	No assigned EC number	0.3504	0.9312	0.8666	yes	N/A
B5ZWQ1	DNAJ_RHILW	No assigned EC number	0.3380	0.9226	0.8563	yes	N/A
Q6RSN5	DNAJ_RHIRD	No assigned EC number	0.3474	0.9340	0.8601	yes	N/A
Q94AW8	DNAJ3_ARATH	No assigned EC number	0.5158	0.9713	0.8071	no	N/A
B0CAZ0	DNAJ_ACAM1	No assigned EC number	0.3437	0.9512	0.8877	yes	N/A
A1BHL1	DNAJ_CHLPD	No assigned EC number	0.3567	0.9455	0.8354	yes	N/A
P25491	MAS5_YEAST	No assigned EC number	0.4525	0.9656	0.8239	yes	N/A
O74752	MAS5_SCHPO	No assigned EC number	0.5086	0.9713	0.8329	yes	N/A
Q5NVI9	DNJA1_PONAB	No assigned EC number	0.5402	0.9656	0.8510	yes	N/A
Q03363	DNJH1_ALLPO	No assigned EC number	0.5281	0.9455	0.8312	N/A	N/A
C3MC05	DNAJ_RHISN	No assigned EC number	0.3456	0.9025	0.8311	yes	N/A
Q2HJ94	DNJA2_BOVIN	No assigned EC number	0.5977	0.9885	0.8373	yes	N/A
Q04960	DNJH_CUCSA	No assigned EC number	0.5382	0.9512	0.8038	N/A	N/A
Q6G553	DNAJ_BARHE	No assigned EC number	0.3536	0.9169	0.8398	yes	N/A
P42824	DNJH2_ALLPO	No assigned EC number	0.5302	0.9742	0.8133	N/A	N/A
P42825	DNAJ2_ARATH	No assigned EC number	0.5472	0.9684	0.8066	yes	N/A
B9JZ89	DNAJ_AGRVS	No assigned EC number	0.3607	0.9426	0.8657	yes	N/A
B6IVA5	DNAJ_RHOCS	No assigned EC number	0.3434	0.8997	0.8284	yes	N/A
Q8WW22	DNJA4_HUMAN	No assigned EC number	0.5386	0.9684	0.8513	no	N/A
Q9QYJ0	DNJA2_MOUSE	No assigned EC number	0.6005	0.9885	0.8373	yes	N/A
O66921	DNAJ2_AQUAE	No assigned EC number	0.3294	0.9197	0.8537	yes	N/A
B1ZGR2	DNAJ_METPB	No assigned EC number	0.3522	0.9426	0.8590	yes	N/A
P50018	DNAJ_AGRT5	No assigned EC number	0.3522	0.9340	0.8647	yes	N/A
B3PXH2	DNAJ_RHIE6	No assigned EC number	0.3418	0.9226	0.8586	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	349
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-116
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-106
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	3e-91
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	5e-75
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	3e-67
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-66
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-62
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-62
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	3e-61
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-59
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-59
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	5e-59
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	6e-58
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-57
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	5e-57
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	7e-57
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-54
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	5e-54
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	7e-54
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-51
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	3e-51
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	5e-51
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	7e-50
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	9e-50
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	3e-49
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-45
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	5e-43
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	7e-42
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	1e-40
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	9e-37
pfam00226	63	pfam00226, DnaJ, DnaJ domain	4e-30
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	9e-27
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	7e-25
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-23
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	1e-21
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	7e-21
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	6e-20
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-18
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-14
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	2e-14
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	7e-14
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	4e-12
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	3e-10
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-07
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	5e-05
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	7e-05
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	3e-04
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	0.001
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	0.002

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  342 bits (878), Expect = e-116
 Identities = 166/346 (47%), Positives = 218/346 (63%), Gaps = 20/346 (5%)

Query: 5   KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDK--NPEAGDKFKEISFAYEVLSDEKKRAT 62
           KLYEVL +SK  +  EIKKAYRKLA + HPDK  +PE   KFKEIS AYEVLSD +KR  
Sbjct: 29  KLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE---KFKEISRAYEVLSDPEKRKI 85

Query: 63  YDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKV 122
           YD YG +G++   G   AD SD L   +FGG          G   G   RGED V  LKV
Sbjct: 86  YDEYGEEGLE--GGEQPADASD-LFDLIFGG----------GRKPGGKKRGEDIVSHLKV 132

Query: 123 SLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQI 182
           +LE +YNG   KL + K VIC+ C G G    A   C  C G G ++  R +G  M  Q 
Sbjct: 133 TLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGS-MIHQT 191

Query: 183 QARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPD 242
           Q+ C+ C G+G+++ E  +C +C+G+     +K+LEVN+DKG+    KI F GE D++P+
Sbjct: 192 QSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPN 251

Query: 243 QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGE 302
           + PG+V+ +L +KPHD F+R+G +L  T+ I+L EAL GF   I HLD R+LL+  PPGE
Sbjct: 252 EIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGE 311

Query: 303 VIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES-YFNNDAK 347
           V+KP DIK I  EGMP YK+P++KG LY+ F+V FP    F N+ K
Sbjct: 312 VVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEK 357

Length = 421

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  315 bits (809), Expect = e-106
 Identities = 134/352 (38%), Positives = 193/352 (54%), Gaps = 27/352 (7%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
           MA    YE+LGVSK AS++EIKKAYRKLAK++HPD+NP   EA +KFKEI+ AYEVLSD 
Sbjct: 1   MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60

Query: 58  KKRATYDRYGIQGIKEKAGGG------GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPH 111
           +KRA YD++G  G K    GG      G DF  D+    FG      GG  G     RP 
Sbjct: 61  EKRAAYDQFGHAGFKAGGFGGFGFGGFGGDF-GDIFEDFFG------GGGGGRRRPNRPR 113

Query: 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCGFKIH 170
           RG D  + L+++LE+   G   ++++T+SV CSTC+G G+K G    TC +C G G    
Sbjct: 114 RGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRT 173

Query: 171 HRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230
            +  G       Q  C  C G G+++  KD CG C G+  +  KK + VN+  G+ +  +
Sbjct: 174 VQRTG---FFSFQQTCPTCNGTGKII--KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR 228

Query: 231 IYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHL 289
           I   GEG+        GD+ + +  KPH  F+R G +L     I+ TEA  G    +  L
Sbjct: 229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTL 288

Query: 290 DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESY 341
           D R + +  P G   +  ++  + G+GMP  ++   +G LY++  V+ P++ 
Sbjct: 289 DGR-VKLKIPAGT--QTGEVFRLRGKGMPKLRSGG-RGDLYVRVKVETPKNL 336

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  276 bits (708), Expect = 3e-91
 Identities = 124/352 (35%), Positives = 188/352 (53%), Gaps = 18/352 (5%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
           YE+LGVSK AS++EIKKAYRKLAK++HPD+N   EA +KFKEI+ AYEVLSD +KRA YD
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62

Query: 65  RYGIQGIKEKAGGGGADFSDDLISQ------LFGGRLFGMGGPFGGHSRGRPHRGEDTVH 118
           ++G  G     GGGG  F+   I        +FG   FG GG  G   R  P RGED  +
Sbjct: 63  QFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGD-FFGGGGGSGRRRRSGPRRGEDLRY 121

Query: 119 PLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIGPN 177
            L+++ E+   G   ++++ +   C TC+G G+K G    TC +C G G  +  +   P 
Sbjct: 122 DLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQ-VRRQQGTPF 180

Query: 178 MTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEG 237
              Q Q  C  C GEG+++  K+ C +C G+  +  +K + V +  G+   Q++   G+G
Sbjct: 181 GFFQQQQTCPTCGGEGKII--KEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKG 238

Query: 238 DQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLI 296
           +  +     GD+ +V+  KPH  F+R G +L     I+ T+A+ G    +  LD    L 
Sbjct: 239 NAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKL- 297

Query: 297 THPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 348
             P G   +   +  + G+G+P       +G L +   V+ P++      +L
Sbjct: 298 KIPAG--TQSGTVFRLKGKGVP-RLRGNGRGDLLVTVKVETPKNLSKEQKEL 346

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  235 bits (603), Expect = 5e-75
 Identities = 112/294 (38%), Positives = 158/294 (53%), Gaps = 35/294 (11%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
           MA    YEVLGVS++AS+ EIKKAYRKLA ++HPD+NP   EA +KFKEI  AYEVLSD 
Sbjct: 1   MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60

Query: 58  KKRATYDRYGIQGIKEKAGGGG----ADFSD---DLISQLFGGRLFGMGGPFGGHSRGRP 110
           +KRA YD+YG    ++  GGGG      F D   D+   +FGG          G  R R 
Sbjct: 61  QKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGG--------RGGGRQRA 112

Query: 111 HRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCGFKI 169
            RG D  + ++++LE+   G T ++++   V C TC+G G+K G +  TC +C G G ++
Sbjct: 113 RRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAG-QV 171

Query: 170 HHRIIGPNMTQQ----IQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGM 225
                     QQ    +Q  C  C G G+++  KD C  C G+  +  +K L V +  G+
Sbjct: 172 R--------MQQGFFTVQQTCPTCHGRGKII--KDPCKKCHGQGRVEKEKTLSVKIPAGV 221

Query: 226 KEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEA 278
               +I   GEG+      P GD+ + +  K H  F+R G +L     I+ T A
Sbjct: 222 DTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTA 275

Length = 371

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  216 bits (552), Expect = 3e-67
 Identities = 141/370 (38%), Positives = 199/370 (53%), Gaps = 38/370 (10%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
           YEVLGVS+SA   EIKKAYRKLA ++HPDKNP   EA + FKE++ AYEVLS++ KR  Y
Sbjct: 6   YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRY 65

Query: 64  DRYGIQGIKEKA--------GGGGADFSD--DLISQLF-GGRLFGMGGPF-------GGH 105
           D++G  G+   A        GGGG DF+D     + +F GG   G G PF       GG 
Sbjct: 66  DQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGG 125

Query: 106 SRGRPH---RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASC 162
            R R      G D    LK++LE++  G    L++ K V C  CNG GSK+GAT TC +C
Sbjct: 126 RRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTC 185

Query: 163 RGCGFKIHHRIIGPNMTQQIQ--ARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVN 220
            G G     R     M  Q      C  C GEG V+  KDRC +C G      +  ++V 
Sbjct: 186 HGSG---EVRQASKTMFGQFVNITACPTCGGEGRVV--KDRCPACYGEGIKQGEVTVKVT 240

Query: 221 VDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEAL 279
           V  G+++   +  RG+G+  P    PGD+I+V+E+KPH+ F R G +++    ++  + +
Sbjct: 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLV 300

Query: 280 CGFTKV-IKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
            G TKV +  LD    L T P G   +PE +  I G+G+   +    +G  Y++ +V  P
Sbjct: 301 LG-TKVEVPTLDGAVKL-TIPAG--TQPETMLRIPGKGIGHLRGS-GRGDQYVRVNVFVP 355

Query: 339 ESYFNNDAKL 348
           +   + D +L
Sbjct: 356 KEVSHQDKEL 365

Length = 397

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  213 bits (544), Expect = 2e-66
 Identities = 119/354 (33%), Positives = 181/354 (51%), Gaps = 36/354 (10%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEKKRATYD 64
           YE+LGVS++A+ +EIKKAYR+LA+++HPD  KNPEA +KFKEI+ AY+VLSD +KR  YD
Sbjct: 6   YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65

Query: 65  RYGIQGIKEKAGGGGADFS----------DDLISQLFGGRLFGMGGPFGGH--------S 106
           ++G       +G                 +D++  +F   +FG G  FG          +
Sbjct: 66  QFGHAAF-SGSGQQQQGQEGFSDFGGGNIEDILEDVF--DIFGFGDIFGRRRATRERRKT 122

Query: 107 RGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGC 165
             RP +GED    +++SLE+ Y G T  L++ + V C  C G G   G+    C +C G 
Sbjct: 123 YQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGS 182

Query: 166 GFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGM 225
           G      I       +I   C  C GEG +   ++ C  C GR  +  K+ ++V +  G+
Sbjct: 183 GE-----IYQRGGFFRISQTCPTCGGEGVL---REPCSKCNGRGLVIKKETIKVRIPPGV 234

Query: 226 KEMQKIYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTK 284
               K+   G+G   +    PGD+ I+++ KPH  F+R+G NL     IT+ EA+ G   
Sbjct: 235 DNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTEL 294

Query: 285 VIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
            +  LD ++  +  PPG   K  D   + G+GMP  K     G L ++  +  P
Sbjct: 295 EVPLLDGKKEKVKIPPG--TKEGDKIRVPGKGMPRLKGS-GYGDLVVRVHIDVP 345

Length = 382

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  203 bits (519), Expect = 1e-62
 Identities = 113/340 (33%), Positives = 174/340 (51%), Gaps = 21/340 (6%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
           YE+LGV++ AS++EIKK+YRKLA ++HPD+NP   EA + FKE + AYEVLSD KKR  Y
Sbjct: 7   YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 64  DRYGIQGIKEKAGGGGADFSDDLISQLFG---GRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
           D+YG +G+      G + F DD+ S  FG      FG GG   G SR     G D  + L
Sbjct: 67  DQYGHEGLSGTGFSGFSGF-DDIFSS-FGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDL 124

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCGFKIHHRIIGPNMT 179
            +   +   G   ++++ K   C  C+G G + G +  TC  C G G     ++      
Sbjct: 125 TLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSG-----QVTQSQGF 179

Query: 180 QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEG-D 238
             I+  C  C+G G+V+     C +C G+  + V K ++V +  G+    ++  RGEG  
Sbjct: 180 FSIRTTCPRCRGMGKVI--VSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEA 237

Query: 239 QQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITH 298
                 PGD+ + L  +PH+ F+R G ++     I+  +A  G    +  L+  + L   
Sbjct: 238 GVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGEREL-KI 296

Query: 299 PPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
           P G   +P DI    G+G+P  +    +G   I+ +V+ P
Sbjct: 297 PKG--TQPGDIFRFKGKGIPSLRG-GGRGDQIIEVEVKVP 333

Length = 366

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  202 bits (516), Expect = 3e-62
 Identities = 131/352 (37%), Positives = 178/352 (50%), Gaps = 29/352 (8%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
           M+    YEVLGVS+ AS+ EIKKAYRKLA ++HPD+NP   EA  KFKE + AYEVL D 
Sbjct: 1   MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60

Query: 58  KKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFG---GRLFGMGGPFGGHSRG-RPHRG 113
           +KRA YDR+G  G+    G GG   ++D+ S  F    G LFG  G  GG  RG RP  G
Sbjct: 61  EKRARYDRFGHAGVNGNGGFGGFSSAEDIFSH-FSDIFGDLFGFSG--GGSRRGPRPQAG 117

Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHHR 172
            D  + L VS      G    L++ K+V C  C G G+  G +  TC  C G G     +
Sbjct: 118 SDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSG-----Q 172

Query: 173 IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY 232
           +       QI   C  C+GEG V+     C  C G   +   + L+V +  G+    ++ 
Sbjct: 173 VRQSQGFFQIAVPCPVCRGEGRVI--THPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230

Query: 233 FRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDD 291
            RGEG+      P GD+ +V+  +    FQRQG +LV T+ I+  +A  G    +  LDD
Sbjct: 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD 290

Query: 292 R-QLLITH--PPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
              L I      GEV +      + G+G+P Y    +KG L ++  V  P  
Sbjct: 291 PVTLDIPKGTQSGEVFR------LRGKGLP-YLGSSQKGDLLVEVSVVTPTK 335

Length = 373

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  200 bits (510), Expect = 3e-61
 Identities = 119/327 (36%), Positives = 173/327 (52%), Gaps = 33/327 (10%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYD 64
           Y +LGVS++ASD EIK+AYRKLA+E HPD NP  EA +KFKEIS AYEVLSD +KR   D
Sbjct: 6   YGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65

Query: 65  RYGIQGIKEKAGGGGADFSD------DLISQLFGGRLFGMGGPFGGHSRG---RPHRGED 115
             G     E AGGGG  F        D+    FGG         G  SRG   R   G D
Sbjct: 66  LGG--DPLESAGGGGGGFGGGFGGLGDVFEAFFGG---------GAASRGPRGRVRPGSD 114

Query: 116 TVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCG--FKIHHR 172
           ++  +++ LE+   G T ++ +  +V+C  C+GKG+   +   TC +C G G    +   
Sbjct: 115 SLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRS 174

Query: 173 IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY 232
            +G  MT +    C  C+G GEV+   D C  CAG   +  ++ + V +  G+ +  +I 
Sbjct: 175 FLGQVMTSR---PCPTCRGVGEVI--PDPCHECAGDGRVRARREITVKIPAGVGDGMRIR 229

Query: 233 FRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDD 291
              +G+  P   P GD+ + + ++PHD F R G +L  T ++ + +A  G T  ++ + D
Sbjct: 230 LAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILD 289

Query: 292 RQLLITHPPGEVIKPEDIKGIVGEGMP 318
               IT PPG   +P  +  + G GMP
Sbjct: 290 GPSEITIPPG--TQPGSVITLRGRGMP 314

Length = 378

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  195 bits (497), Expect = 2e-59
 Identities = 119/349 (34%), Positives = 178/349 (51%), Gaps = 24/349 (6%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEK 58
            AD   YE+LGVS+ A   E+K+AYR+LA+++HPD N E G  D+FKEI+ AYEVLSD +
Sbjct: 2   AAD--YYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPE 59

Query: 59  KRATYDRYGIQGIKEKAGGGGADFSD-----DLISQLFGGRLFGMGGPFGGHSRGRPHRG 113
            RA YD++G  G+      G  D  D     D+    F G   G GG  G   R  P RG
Sbjct: 60  TRARYDQFGEAGV--SGAAGFPDMGDMGGFADIFETFFSG-FGGAGGQGGRRRRRGPQRG 116

Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG-ATFTCASCRGCGFKIHHR 172
           +D  + LK+   +   G   ++++     C TC G G+K G    TC++C G G ++   
Sbjct: 117 DDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAG-QVRRA 175

Query: 173 IIGP--NMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230
              P  + TQ   + C  C G G+V+  +D C +C G+    V K L++N+  G+    +
Sbjct: 176 TRTPFGSFTQ--VSECPTCNGTGQVI--EDPCDACGGQGVKQVTKKLKINIPAGVDTGTR 231

Query: 231 IYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHL 289
           +   GEGD       PGD+ + L  K    F+R GIN+++   I+  +A+ G T  +  +
Sbjct: 232 LRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTV 291

Query: 290 DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
           D    L T P G   +P  +  +  +G+P   NP  +G   I   V+ P
Sbjct: 292 DGPVEL-TIPAG--TQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIP 337

Length = 374

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  195 bits (497), Expect = 3e-59
 Identities = 122/360 (33%), Positives = 194/360 (53%), Gaps = 32/360 (8%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
                 YEVLGVSK+A+  EIKKAYRK A ++HPDKNP   EA +KFKE + AY+VLSD 
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61

Query: 58  KKRATYDRYGIQGIKEKAGGGGAD---FS-DDLISQ---LFGGRLFGMGGPFG---GHSR 107
            KR+ YD++G  G+   AGGGG      S +D+ S    +FGG   G GG  G   G S+
Sbjct: 62  DKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQ 121

Query: 108 GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSK-SGATFTCASCRGCG 166
            R  RG D    +K++L+++  G   K ++ K V CS C+G G++ +  + TC +C+G G
Sbjct: 122 QRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSG 181

Query: 167 --FKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKG 224
              ++ + I+G   T Q Q+ C  C GEG+++  K +C  C G   +  ++V+ V +  G
Sbjct: 182 SVTRVQNTILG---TMQTQSTCPTCNGEGKII--KKKCKKCGGEGIVYGEEVITVKIPAG 236

Query: 225 MKEMQKIYFRGEGDQQPDQE-PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFT 283
           + E  ++   G+G+        GD+++V+E++PH    R   +L+    +++  A  G  
Sbjct: 237 VAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGA 296

Query: 284 KVIKHLDDRQLLITHP---PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
             +  +D +  +       PG+V++      +  +G+P   N Y  G L +   V  PE+
Sbjct: 297 VEVPTIDGKAKVKIEAGTQPGKVLR------LRNKGLPSV-NGYGTGDLLVNVSVYIPET 349

Length = 386

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  194 bits (495), Expect = 5e-59
 Identities = 124/354 (35%), Positives = 194/354 (54%), Gaps = 29/354 (8%)

Query: 1   MADTK-LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDE 57
           MA+ +  YEVLGV ++A  +EIKKAYRKLA+++HPD +    A +KFKEIS AY VLSD+
Sbjct: 1   MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDD 60

Query: 58  KKRATYDRYGIQGIKEKAGGGGADFSDDL----ISQLFG---GRLFGMGGPFGGHSRGRP 110
           +KR  YD++G  G+    G    D  +++    I Q FG   G +F M G FGG SR  P
Sbjct: 61  EKRQRYDQFGHAGMD---GFSQEDIFNNINFEDIFQGFGFGIGNIFDMFG-FGGGSRHGP 116

Query: 111 HRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCG--F 167
            RG D    ++++LE+  +G    +++  +  C  CNG  ++ G+   TC +C G G   
Sbjct: 117 QRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVK 176

Query: 168 KIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKE 227
           ++ + I+G  M       C DCQGEG+++  +  C +C G+  +   K + V +  G++ 
Sbjct: 177 QVRNTILGQMMN---VTTCPDCQGEGKIV--EKPCSNCHGKGVVRETKTISVKIPAGVET 231

Query: 228 MQKIYFRGEGDQQPDQ--EPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKV 285
             ++   GEG+   D+  EPGD+ +V++ KPH  F+R+G NL   + I+  +A  G T  
Sbjct: 232 GSRLRVSGEGEMG-DRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVD 290

Query: 286 IKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
           +  + D  + +  P G   +      + G GMP  +    KG LY+K  V  P+
Sbjct: 291 VPTI-DGPVELKIPAG--TQSGTTFRLKGHGMPSLRWS-GKGNLYVKVKVVVPK 340

Length = 378

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  191 bits (487), Expect = 6e-58
 Identities = 111/292 (38%), Positives = 154/292 (52%), Gaps = 22/292 (7%)

Query: 1   MADTK-LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDE 57
           MA T+  YE+LG+SK AS ++IKKAYRKLA ++HPDKN E    +KFKEIS AY VLSD 
Sbjct: 1   MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA 60

Query: 58  KKRATYDRYGIQGIKEKAGG----GGADFSD--DLISQLFGGRLFGMGGPFGGHSRGRPH 111
           +KRA YDR+G  GI  +        GADF    D+    FGG   G  G  G      P 
Sbjct: 61  EKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGG--GRRGRMG------PR 112

Query: 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIH 170
           RG D  + L ++LE+   G    + + ++  CSTC+G G+K G +   C +C G G ++ 
Sbjct: 113 RGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTG-QVT 171

Query: 171 HRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230
                P         CS C G G+V+     C  C+G   +   + + VNV  G     +
Sbjct: 172 TTRSTPLGQFVTTTTCSTCHGRGQVIESP--CPVCSGTGKVRKTRKITVNVPAGADSGLR 229

Query: 231 IYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
           +   GEG+   P    GD+ IVL  K HD F+R G ++++   I+ T+A  G
Sbjct: 230 LKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALG 281

Length = 377

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  190 bits (483), Expect = 2e-57
 Identities = 123/354 (34%), Positives = 191/354 (53%), Gaps = 28/354 (7%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDE 57
           M++   Y++LGVSKSA+D+EIK AYRKLA ++HPDKN    E+ +KFKE + AYE+L D 
Sbjct: 1   MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60

Query: 58  KKRATYDRYGIQGIKEKAGGGGA----DFSD------DLISQLFGGRLFGMGGPFGGHSR 107
           KKR  YD++G  G+   AGG G     DFSD      D+    FGG   G GG  GG  R
Sbjct: 61  KKRQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGG---GRGGGSGGGRR 117

Query: 108 GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCG 166
             P RG D  + L+VSLED   G+  K+++ +   C  CNG G+  G++  TC  C G G
Sbjct: 118 SGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSG 177

Query: 167 FKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK 226
                +I        +   C  C+G+G V++  + C +C G+     ++ + + +  G++
Sbjct: 178 -----QIRRTQGFFSVATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVE 230

Query: 227 EMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKV 285
              ++   GEG+  P+  P GD+ +V   K H+ F+RQG +L+    I+L +A+ G    
Sbjct: 231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIE 290

Query: 286 IKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
           +  +D ++  +  P G   +   +  + G GMP Y   Y KG  ++   ++ P+
Sbjct: 291 VPTIDGKKAKMKIPEG--TESGQVFRLKGHGMP-YLGAYGKGDQHVIVKIEIPK 341

Length = 372

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  189 bits (481), Expect = 5e-57
 Identities = 114/300 (38%), Positives = 163/300 (54%), Gaps = 36/300 (12%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEK 58
           MA    YEVLGVSKSAS  EIKKAYRKL+K++HPD N E G  +KFKEIS AYEVLSD++
Sbjct: 1   MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQ 60

Query: 59  KRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGP--------FGGHSRGR- 109
           KRA YD++G  G  +  GGGG           FGG  FG G          FGG  R R 
Sbjct: 61  KRAQYDQFGHAGPNQGFGGGG-----------FGGGDFGGGFGFEDIFSSFFGGGGRRRD 109

Query: 110 ---PHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGC 165
              P +G D  + + ++ E+   GK  ++++ K   C TC+G G+K G +  TC+ C G 
Sbjct: 110 PNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGS 169

Query: 166 GFKIH---HRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD 222
           G ++    +   G  + +Q    C  C G G+ + EK  C +C G+  +  +K + V + 
Sbjct: 170 G-QVSVEQNTPFGRVVNRQT---CPHCNGTGQEIKEK--CPTCHGKGKVRKRKKINVKIP 223

Query: 223 KGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
            G+   Q+I   GEG+   +  P GD+ +V   +PH+ F+R G ++     +T  +A  G
Sbjct: 224 AGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALG 283

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  189 bits (481), Expect = 7e-57
 Identities = 103/298 (34%), Positives = 149/298 (50%), Gaps = 29/298 (9%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEK 58
           M +T+ Y+ LGVSK AS  EIKKAYRKL+K++HPD N E G  +K+KE+  AYE LSD +
Sbjct: 1   MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQ 60

Query: 59  KRATYDRYGIQGIKEKAGGGGADFS-----------DDLISQLFGGRLFGMGGPFGGHSR 107
           KRA YD+YG  G     GGG   F            +D+ S  FGG         GG  R
Sbjct: 61  KRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFFGG---------GGARR 111

Query: 108 --GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRG 164
               P +G+D  + + +  E+   GK  ++   +   C TCNG G+K G +  TC  C G
Sbjct: 112 NPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHG 171

Query: 165 CGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKG 224
            G  I      P    + Q  C  C G G+ +  K+ C +C G         + V +  G
Sbjct: 172 SGV-ITVDTQTPLGMMRRQVTCDVCHGTGKEI--KEPCQTCHGTGHEKQAHTVSVKIPAG 228

Query: 225 MKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
           ++  Q+I  +G+G+   +  P GD+ +V   +P  +F+R G  +  T  I+  +A  G
Sbjct: 229 VETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALG 286

Length = 380

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  182 bits (463), Expect = 2e-54
 Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 37/360 (10%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKKRATY 63
           YE+LG+SK AS  EIKKAYRK+A ++HPDK   N EA   FKE + AYEVL D+ KRA Y
Sbjct: 6   YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65

Query: 64  DRYGIQGIKEKAG-----GGGADFSD------DLISQLFGGRLFGMGGPFGGHSRGRPH- 111
           DR+G    +   G     GG + FSD      D+    F G          G  + R H 
Sbjct: 66  DRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGN--------RGQDKNRKHE 117

Query: 112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFT-CASCRGCGFKIH 170
           +G+D  + +++SLED Y G    + +T++++C +C GK S+ G + + C  C G G    
Sbjct: 118 KGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSG---- 173

Query: 171 HRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK 230
            R++      ++   C  C G G++++  + C SC G+ +L  K+ +E+ +  G+ + Q+
Sbjct: 174 -RVMQGGGFFRVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230

Query: 231 IYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHL 289
           I  RG+G   PD Q+ GD+ I +  KPH  F+R G +L  T  I+ T+A  G    I+ +
Sbjct: 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTI 290

Query: 290 DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEK-GTLYIKFDVQFPESYFNNDAKL 348
             +++ I  P G   + ++   I  EGMPI     EK G L +   ++ P++  +N  KL
Sbjct: 291 ASKKIKIKIPKG--TENDEQIIIKNEGMPILHT--EKFGNLILIIKIKTPKNLNSNAIKL 346

Length = 365

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  181 bits (460), Expect = 5e-54
 Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 25/343 (7%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEKKRATYD 64
           YE+LGVS++AS  EIK AYRKLA ++HPD+N E G  +KF +I+ AY VLSD +KRA YD
Sbjct: 5   YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64

Query: 65  RYGIQGIKEKAGG---GGADFSD-DLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
           R+G        GG   GG  F   D+  QLFGG      G  GG  R  P RG+D     
Sbjct: 65  RFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFGG-----AGFGGGRGRRGPARGDDLETEA 119

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT--FTCASCRGCG-FKIHHR-IIGP 176
           +++LE    G+  ++++ +   C  C+G  ++ G     TC +CRG G  +   R I G 
Sbjct: 120 RITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGV 179

Query: 177 NMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGE 236
             TQQ    C  C+GEG+++   D C  C GR      + ++V + +G+ E  +I   G 
Sbjct: 180 VETQQP---CPTCRGEGQII--TDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGM 234

Query: 237 GDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLI 296
           G++ P    GD+ + +E +PH   +R+  +L+    I   +A  G    +  LD  Q +I
Sbjct: 235 GNEGPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VI 292

Query: 297 THPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
              PG   +  D+  + G+GMP  +     G L +++++  P+
Sbjct: 293 EVKPG--TQHGDLHRLRGQGMPRLQG-AGTGDLIVEYEIAVPK 332

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  181 bits (460), Expect = 7e-54
 Identities = 122/360 (33%), Positives = 186/360 (51%), Gaps = 32/360 (8%)

Query: 1   MADTK-LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSD 56
           MA  K  YE+LGV ++A+++EIKKAYR+LAK++HPD NP   EA  KFKEI+ AYE+LSD
Sbjct: 1   MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 60

Query: 57  EKKRATYDRYGIQGIKEKA-----------GGGGADFSDDLISQLFGGRLFGMGGPFGGH 105
            +KRA YD++G                   GGGG DF       +F   +FG    FG  
Sbjct: 61  PQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFED-IFGDF--FGTG 117

Query: 106 SRGR---PHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCAS 161
            R     P +G D  + L+++ E+   G   ++++ +   C  C G G+K G+   TC  
Sbjct: 118 RRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPV 177

Query: 162 CRGCGFKIHHRIIGPNMTQQIQAR-CSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVN 220
           C G G ++  R   P   + +  R C  C GEG+++   D C  C G   +  ++ ++VN
Sbjct: 178 CHGTG-QVRTRQNTP-FGRIVNIRTCDRCHGEGKII--TDPCNKCGGTGRIRRRRKIKVN 233

Query: 221 VDKGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEAL 279
           +  G+ + Q I  RGEG+      P GD+ IV++ KPH  F+R+G N+     IT T+A 
Sbjct: 234 IPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAA 293

Query: 280 CGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
            G    I  LD + +  T P G   +      + G+G+P +     +G   +K  ++ P+
Sbjct: 294 LGGEIEIPTLDGK-VKFTIPEG--TQTGTKFRLRGKGIP-HLRGRGRGDQIVKVYIEVPK 349

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  175 bits (444), Expect = 2e-51
 Identities = 122/359 (33%), Positives = 176/359 (49%), Gaps = 38/359 (10%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
           Y +LGVSK+AS +EIKKAYRKLA ++HPDKNP   EA  +FKE+S AYEVLSD +KR +Y
Sbjct: 4   YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 64  DRYGIQGIKEKAGG-GGADFS--DDLISQL---FGGR----------LF-GMGGPFGGHS 106
           DRYG  G    AGG GGA     +D +      FGG           LF G+G  FG   
Sbjct: 64  DRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRG 123

Query: 107 RGRPHR--GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCR 163
                R      VH + +S E+   G   +L ++    C  C+G G+ S      C  C+
Sbjct: 124 GPAGARQGASKKVH-ITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCK 182

Query: 164 GCGFKIHHR-IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD 222
           G G  +  R       T      C +C GEG V+   D C  C G+  +  K+ + V++ 
Sbjct: 183 GSGQVVQSRGFFSMAST------CPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHIP 234

Query: 223 KGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
            G+    ++   G GD   +  P GD+ + ++ +PH  F+R+G +L+    I   +A  G
Sbjct: 235 AGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALG 294

Query: 282 FTKVIKHL-DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
             K I  L  +    +T P G  I+   I  + G+G P       +G L ++  V+ P+
Sbjct: 295 MKKEIPTLLKEGTCRLTIPEG--IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQ 350

Length = 391

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  174 bits (442), Expect = 3e-51
 Identities = 112/370 (30%), Positives = 177/370 (47%), Gaps = 36/370 (9%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSD 56
                 YE+LGVS++A+ +EIK+AY++L KE+HPD++PE    A  KFKEI  AYEVLSD
Sbjct: 1   REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD 60

Query: 57  EKKRATYDRYGIQG---IKEKAGGGGADFSD-----------DLISQLFGGRLFGMGGPF 102
            +KRA YDR+G  G     ++   GG  F D           D+    FG R        
Sbjct: 61  PQKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGER------RT 114

Query: 103 GGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCAS 161
               R    RGED  + ++V+L DL NG    ++  +   C  C G G + G+ + TC  
Sbjct: 115 QEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPK 174

Query: 162 CRGCGFKIHHR--IIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEV 219
           C G G     R    G  ++++    C  C G G++  E   C  C G   +  +    V
Sbjct: 175 CHGTGRIREERRSFFGVFVSERT---CERCGGTGKIPGEY--CHECGGSGRIRRRVRTTV 229

Query: 220 NVDKGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEA 278
            +  G+++   +   G G+      P GD+ +++  +P  RF+R G +L+   TI   +A
Sbjct: 230 KIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQA 289

Query: 279 LCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
           + G T  +   +    ++  PPG   +PE +  + G+G+P  +    +G L +   V+ P
Sbjct: 290 ILGTTVEVPLPEGGTTMLKIPPG--TQPETVFRLKGKGLPNMRYG-RRGDLIVNVHVEIP 346

Query: 339 ESYFNNDAKL 348
           +     + KL
Sbjct: 347 KRLSREERKL 356

Length = 369

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  173 bits (441), Expect = 5e-51
 Identities = 116/319 (36%), Positives = 162/319 (50%), Gaps = 32/319 (10%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEKKRATY 63
           Y+VLGV K A++ EIKKAYRKLA+E+HPD N    +A ++FKEIS AY+VLSDEKKR  Y
Sbjct: 12  YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71

Query: 64  DR----YGIQGIKEKAGGG-GADFSDDLISQLFGGRLFG-------------MGGPFGGH 105
           D     +G  G +   GGG G  F+ DL   LFGG   G              GG F   
Sbjct: 72  DEARSLFGNGGFRPGPGGGGGGGFNFDL-GDLFGGGAQGGGGAGGGGGLGDVFGGLFNRG 130

Query: 106 SR-GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCR 163
            R  +P RG D    + +S  +  +G T  L+LT    C  C+G G+K+G T   C +C 
Sbjct: 131 GRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCS 190

Query: 164 GCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDK 223
           G G ++     G ++++     C DC+G G + +  D C  C G       + ++V +  
Sbjct: 191 GTG-QVSRNSGGFSLSEP----CPDCKGRGLIAD--DPCLVCKGSGRAKSSRTMQVRIPA 243

Query: 224 GMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGF 282
           G+ + Q+I  RG+G       P GD+ +V+   PH  F R G NL  T  +T  EA  G 
Sbjct: 244 GVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGA 303

Query: 283 TKVIKHLDDRQLLITHPPG 301
              +  L    + +  PPG
Sbjct: 304 EVRVPTLGGPPVTVKLPPG 322

Length = 389

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  170 bits (432), Expect = 7e-50
 Identities = 119/354 (33%), Positives = 180/354 (50%), Gaps = 40/354 (11%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRAT 62
           Y++LGV ++AS ++IKKA+R+LAK++HPD +P    EA +KFKEIS AYEVLSD +KR  
Sbjct: 6   YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65

Query: 63  YDRYGIQGIKEKAGGGGADFS----------DDLISQLFGGRLFGMGGPFGGHSRGRPHR 112
           YD+ G        G GG++F+          +D+ +Q+FGG  FG    F G    +  R
Sbjct: 66  YDQTGTVDF----GAGGSNFNWDNFTHFSDINDIFNQIFGGN-FG-SDFFSGFGNQQSTR 119

Query: 113 GE--DTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIH 170
               D    L +SLED Y G   +++  ++ +C  C+G G+K+G   TC +C G G    
Sbjct: 120 NIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTG---Q 176

Query: 171 HRII-GPNMTQQIQ-ARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEM 228
            RI+ G    + +    C  C G G +  EK  C  C G  T+ V + + V + KG  + 
Sbjct: 177 QRIVRGQGFFRMVTVTTCRTCGGRGRIPEEK--CPRCNGTGTVVVNEDISVKIPKGATDN 234

Query: 229 QKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKH 288
            ++  +G+G Q      GD+ +VL        QR   +L   + I   +A  G    IK 
Sbjct: 235 LRLRVKGKG-QSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKL 293

Query: 289 LDDRQLLIT---HPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 339
             ++  L       PGEV+K      I G GMP + N +  G L ++ +V+ P+
Sbjct: 294 FREKYNLKIPEGTQPGEVLK------IKGAGMP-HLNGHGSGDLLVRINVEVPK 340

Length = 365

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  170 bits (432), Expect = 9e-50
 Identities = 120/350 (34%), Positives = 181/350 (51%), Gaps = 17/350 (4%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
           MA    YEVLG+ K ASD EIKKA+RKLA ++HPDKN    EA +KFKEI+ AY+VLSD 
Sbjct: 1   MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60

Query: 58  KKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFG-GRLFGM--GGPFGGHSRGR--PHR 112
           +K+A YD++G        G G   F     S + G G +F    GG FG  SR R  P R
Sbjct: 61  QKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQR 120

Query: 113 GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCGFKIHH 171
           G D  + + ++ E+   G   ++ +T++  C TCNG G+K G +  TC  C G G +I  
Sbjct: 121 GADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTG-QIRV 179

Query: 172 RIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKI 231
           +   P  +      C  C G G+V+  +D C  C G+  +   + ++VNV  G+     I
Sbjct: 180 QRNTPLGSFVSTTTCDKCGGSGKVI--EDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVI 237

Query: 232 YFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD 290
             RG+G+   +  P GD+ I +   PH  F+R+G ++   + I+  +A  G    +  +D
Sbjct: 238 PLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297

Query: 291 DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
             ++    P G   +P  +  + G+G+P   N   +G  Y+   V  P+ 
Sbjct: 298 G-EVKYEVPAG--TQPGTVFRLKGKGVP-RVNSTGRGNQYVTVIVDIPKK 343

Length = 380

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  169 bits (429), Expect = 3e-49
 Identities = 102/325 (31%), Positives = 144/325 (44%), Gaps = 45/325 (13%)

Query: 2   ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEK 58
            +   Y+ LGVS  AS +EIKKAYRKLA+E HPD NP    A ++FK +S A++VLSD  
Sbjct: 7   VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPA 66

Query: 59  KRATYDRY------------------GIQGIKEKAGGGGADFSDDL----------ISQL 90
           KR  YD                    G  G      G   + +D            I  L
Sbjct: 67  KRKEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDL 126

Query: 91  FGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG 150
           FGG LF  GG  G     RP RG D      +   +   G T  L+LT    C+TC+G G
Sbjct: 127 FGG-LFNRGG--GSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSG 183

Query: 151 SKSG-ATFTCASCRGCGFKIHHRIIGPNM-TQQIQARCSDCQGEGEVMNEKDRCGSCAGR 208
           ++ G +   C +C G G       I  N         C+DC+G G ++   D C  C G 
Sbjct: 184 ARPGTSPKVCPTCNGSGV------ISRNQGAFGFSEPCTDCRGTGSIIE--DPCEECKGT 235

Query: 209 KTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINL 267
              +  + + V +  G+++ Q+I   G+G+      P GD+ + +  +P   F R G +L
Sbjct: 236 GVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDL 295

Query: 268 VTTETITLTEALCGFTKVIKHLDDR 292
             T  ++ TE   G T  +  LD  
Sbjct: 296 TVTVPVSFTELALGSTLSVPTLDGP 320

Length = 392

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  159 bits (403), Expect = 1e-45
 Identities = 111/370 (30%), Positives = 182/370 (49%), Gaps = 38/370 (10%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEK 58
           M     YEVLGVSK+AS+QEI++AYRKLAK++HPD  K+P+A DK  EI+ A +VL D+ 
Sbjct: 1   MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKD 60

Query: 59  KRATYDRYGIQGIKEKAGGGG--ADFSD--------------DLISQLFGGRLFGMGGPF 102
           KR  YD++G       +G      DF D              ++ S  FG          
Sbjct: 61  KRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGS--------- 111

Query: 103 GGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFT-CAS 161
                 R  +G+     + ++ ++L  G    ++L     CS C G G++S +    C +
Sbjct: 112 NKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNN 171

Query: 162 CRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNV 221
           C G G  +  + +G    QQ  A+C+ C G G+++  K++C +C G+     +K +EVN+
Sbjct: 172 CHGTGEVLVQKNMGFFQFQQ-SAKCNVCNGAGKII--KNKCKNCKGKGKYLERKKIEVNI 228

Query: 222 DKGMKEMQKIYFRGEGDQQPDQE-PGDVIIVLEQKPHDRFQRQGIN-LVTTETITLTEAL 279
            KG++  Q+I    +G    +    GD+II +  K    F+    N ++ T  I+  +A+
Sbjct: 229 PKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAI 288

Query: 280 CGFTKVIKHLD-DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP 338
            G   +IK LD D +  +   P  +   E I  I  +G+    N  ++G L IK ++  P
Sbjct: 289 LGNEIIIKTLDGDIKYKL---PKSINSNELII-INNKGLYKSINKDKRGDLIIKVNIVVP 344

Query: 339 ESYFNNDAKL 348
           ++    + +L
Sbjct: 345 KNLSKKEKEL 354

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  152 bits (385), Expect = 5e-43
 Identities = 107/311 (34%), Positives = 159/311 (51%), Gaps = 31/311 (9%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGD---KFKEISFAYEVLSDEKKRATY 63
           Y++LGVSK+AS  ++KKAY KLAK++HPD   +A D   KFKEI+ AY+VL DE+KRA Y
Sbjct: 6   YQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAY 64

Query: 64  DRYG---IQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPH----RGEDT 116
           DR+G    Q  + + GGG        I+ +FG          GG  R RP     RG D 
Sbjct: 65  DRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDF---MGGSRRSRPTSSKVRGSDL 121

Query: 117 VHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIG 175
            + L ++LE+ ++G    +  +  V C TC+G GS+ G T  TC +C G         +G
Sbjct: 122 KYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSG---------VG 172

Query: 176 PNMTQQ----IQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKI 231
               QQ    I+  C  CQG G+++  K+ C  C G      ++ L VN+  G++   +I
Sbjct: 173 ATRMQQGFFTIEQACHKCQGNGQII--KNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230

Query: 232 YFRGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD 290
              GEG+        GD+ + +  KPHD ++  G NL     I+   A  G    +  ++
Sbjct: 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIE 290

Query: 291 DRQLLITHPPG 301
             ++ +T P G
Sbjct: 291 GGKVNLTIPAG 301

Length = 372

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  149 bits (377), Expect = 7e-42
 Identities = 99/288 (34%), Positives = 158/288 (54%), Gaps = 17/288 (5%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEK 58
           M+    YEVLGV ++AS  E+KKAYRKLA+++HPD  K P+A DKFKE+  AY+ LSD +
Sbjct: 1   MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQ 60

Query: 59  KRATYDRYGIQGIKEKAGGGGA-DFS--DDLISQLFGGRLFGMGGPFGGHSRGRPHRGED 115
           K+A YD++G     +  GGGGA DF    D+    FGG     GG  G  +   P +G D
Sbjct: 61  KKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGG-----GG--GRRNPNAPRQGAD 113

Query: 116 TVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT-FTCASCRGCGFKIHHRII 174
             + + +  ++   GK T++++ +   C TC+G G+K G    TC+ C G G +++    
Sbjct: 114 LQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSG-QLNVEQN 172

Query: 175 GPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR 234
            P      +  C  C+G G+++  K +C +C G+  +  +K + V V  G+   Q++   
Sbjct: 173 TPFGRVVNRRVCHHCEGTGKII--KQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS 230

Query: 235 GEGDQQPDQEP-GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCG 281
           G+G+   +  P GD+ +V   KPH+ F+R G ++     +T  +   G
Sbjct: 231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALG 278

Length = 371

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  139 bits (353), Expect = 1e-40
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 5/129 (3%)

Query: 213 VKKVLEVNVDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTE 271
            KK L V +  G+ + Q++  RGEGD  P    PGD+ +V+  KPH  F+R G +L    
Sbjct: 33  EKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEV 92

Query: 272 TITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYI 331
            I+LTEAL G    +      ++ +  PPG   +P  +  + G+GMP       +G LY+
Sbjct: 93  PISLTEALLGGEIEVPT-LGGKVKLKIPPGT--QPGTVLRLKGKGMPRL-RGGGRGDLYV 148

Query: 332 KFDVQFPES 340
           +  V+FP+ 
Sbjct: 149 EVKVEFPKK 157

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  135 bits (342), Expect = 9e-37
 Identities = 101/340 (29%), Positives = 172/340 (50%), Gaps = 21/340 (6%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
           YE+L V K ++ + IKK+YRKLA ++HPD+N    EA +KFK I+ AY VLSDEKKRA Y
Sbjct: 6   YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALY 65

Query: 64  DRYGIQGIKEKAGGGGADFSD---DLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPL 120
           DRYG +G+ + AG   +DFSD   DL S  F    FG G    G  R +     D +  +
Sbjct: 66  DRYGKKGLNQ-AGASQSDFSDFFEDLGS--FFEDAFGFGAR--GSKRQKSSIAPDYLQTI 120

Query: 121 KVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQ 180
           ++S ++   G    +++    +C +C+G G+K  A  TC  C G G     ++       
Sbjct: 121 ELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQG-----QVFMRQGFM 175

Query: 181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ 240
                C  CQG+G+++  K  C +C G+  +   + ++  + +G+ +  ++  + +G++ 
Sbjct: 176 SFAQTCGACQGKGKII--KTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEY 233

Query: 241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 300
              + GD+ +    K  + F+R+G +L     +  T    G T  +  L   +L +  P 
Sbjct: 234 EKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPR 293

Query: 301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
               +         EG+   ++ Y +G+L ++  V +P+S
Sbjct: 294 NA--RDRQTFAFRNEGVKHPESSY-RGSLIVELQVIYPKS 330

Length = 369

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  109 bits (274), Expect = 4e-30
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 3/62 (4%)

Query: 6  LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRAT 62
           YE+LGV + ASD+EIKKAYRKLA ++HPDKNP    A +KFKEI+ AYEVLSD +KRA 
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 63 YD 64
          YD
Sbjct: 62 YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  106 bits (267), Expect = 9e-27
 Identities = 67/147 (45%), Positives = 82/147 (55%), Gaps = 18/147 (12%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEK 58
           MA    Y +LGV K+AS  EIKKA++KLA+++HPD  K+P A +KFKEI+ AY VLSD +
Sbjct: 1   MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPE 60

Query: 59  KRATYDRYG-------IQGIKEKAGGGG-------ADFSDDLISQLFGGR-LFGMGGPFG 103
           KR  YD YG        QG      GGG        DFS D   QLFGGR  FG  G   
Sbjct: 61  KRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFS-DFFQQLFGGRGGFGGFGDLF 119

Query: 104 GHSRGRPHRGEDTVHPLKVSLEDLYNG 130
           G    R  +G D    L ++LE+ Y G
Sbjct: 120 GSVGRRARKGRDLEAELPLTLEEAYRG 146

Length = 291

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 95.0 bits (237), Expect = 7e-25
 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 4/60 (6%)

Query: 4  TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKK 59
          T  YE+LGV + AS  EIKKAYRKLA ++HPDKNP    EA +KFKEI+ AYEVLSD +K
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 90.7 bits (226), Expect = 3e-23
 Identities = 37/53 (69%), Positives = 44/53 (83%), Gaps = 3/53 (5%)

Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSD 56
          Y++LGV   ASD+EIKKAYRKLA ++HPDKNP   EA +KFKEI+ AYEVLSD
Sbjct: 3  YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 87.2 bits (217), Expect = 1e-21
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 266 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYE 325
           +L  T  I+L EAL G T  +  LD R++ I  P G   +P D   I G+GMPI K    
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAG--TQPGDKLRIKGKGMPINKGGNG 58

Query: 326 KGTLYIKFDVQFPESYFNNDAKL 348
           +G L +  +V+ P+   +   +L
Sbjct: 59  RGDLIVTLNVKIPKKLSSEQKEL 81

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 93.7 bits (232), Expect = 7e-21
 Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 5/87 (5%)

Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
          YEVLG+ + A +QEIKKA+RKLAK++HPD+N  P+A   F EI+ A +VLS+ KKRA YD
Sbjct: 5  YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYD 64

Query: 65 RYGIQGIKEKAGGGGADFSDDLISQLF 91
          +YG  G+         DF  D+ +  F
Sbjct: 65 KYGHDGVD---REDDFDFQADVFNSFF 88

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 88.3 bits (219), Expect = 6e-20
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 20/132 (15%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEKKRATYD 64
           Y ++GV  +   + IK AYR+LA+++HPD  K P+A  +FKE++ A+EVLSDE++RA YD
Sbjct: 7   YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66

Query: 65  ---------RYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRP-HRGE 114
                    ++  Q          A+  DD+ S +F        G     SR RP  RG 
Sbjct: 67  QLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIF--------GQHARQSRQRPAARGH 118

Query: 115 DTVHPLKVSLED 126
           D    + V LE+
Sbjct: 119 DIEIEVAVFLEE 130

Length = 306

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 83.3 bits (205), Expect = 1e-18
 Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 12/106 (11%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSD 56
                 YE+LGV  +AS +EIKKAYRKLA ++HPD+NP     A +KFKEI+ AYE+LSD
Sbjct: 3   SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD 62

Query: 57  EKKRATYDRYGIQ--------GIKEKAGGGGADFSDDLISQLFGGR 94
            ++RA YD+ G                   G+     L  +  G R
Sbjct: 63  PERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKR 108

Length = 237

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 14/136 (10%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--------EAGDKFKEISFAYEVLSDEK 58
           YE+LG+ +  S+++IKK YR L+ +FHPDK P        E  +K+K I+ AY +L+D+K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 59  KRATYDRYGIQGIKEKAGGGGA------DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHR 112
           +R  Y  YG     +    G A           + + +    L G+  P+  +   R  R
Sbjct: 161 RRENYLNYGTPDSPQHTSEGIALPKVIVRSERSMYAFVMYSLLLGVFLPYWVYRWWREIR 220

Query: 113 GEDTVHPLKVSLEDLY 128
               V    V++E  Y
Sbjct: 221 DYTKVGVHFVTMEMFY 236

Length = 610

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 143 CSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201
           C  C+G G+K G    TC  C G G  +  +   P    Q+Q  C  C G G+++  KD 
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQR-TPGGVFQMQQTCPKCGGTGKII--KDP 57

Query: 202 CGSCAGRK 209
           C  C G+ 
Sbjct: 58  CKVCKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 143 CSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR 201
           C TCNG G+K G    TC +C G G     +  G     Q Q  C  C G G+++  KD 
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGF-GFFQTQTTCPTCGGTGKII--KDP 57

Query: 202 CGSCAGRK 209
           C  C G+ 
Sbjct: 58  CPKCKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 65.2 bits (160), Expect = 4e-12
 Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 10/63 (15%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDK------NPE----AGDKFKEISFAYEVLSD 56
           Y+VLGVS+S  DQEIK+AYRKL  E HPDK       PE    A +K +EI  AYE++  
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262

Query: 57  EKK 59
           +K 
Sbjct: 263 QKG 265

Length = 267

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 3   DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKR 60
           DT  Y++LGV  +A  +EI + Y KLA+ ++P K    E   KFK+I+ AY++L D  K+
Sbjct: 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKK 631

Query: 61  ATYDRYGIQGIKE 73
             Y+++G  GIK 
Sbjct: 632 KMYNKFGYDGIKG 644

Length = 1136

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 8/67 (11%)

Query: 6   LYEVLGVSK---SASDQEIKKAYRKLAKEFHPDKNPEAGDK-----FKEISFAYEVLSDE 57
           LY +LG+SK    A   +I KA++K   ++HPDK    G+K     FK I  A EVL D 
Sbjct: 45  LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104

Query: 58  KKRATYD 64
           K R  YD
Sbjct: 105 KLRLQYD 111

Length = 379

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 5  KLYEVLGVSKSASDQE--IKKAYRKLAKEFHPDK--NPEAGDKFKEISFAYEVLSDEKKR 60
          +L ++LG+ +SA      ++KAY +   EFHPDK  + E   K KE++  Y+   +  K 
Sbjct: 6  ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEE---KMKELNTLYKKFRESVKS 62

Query: 61 A 61
           
Sbjct: 63 L 63

Length = 153

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYD 64
            +VLGV   A    IKKAYRKL  E HPDK    G K + I    E L  ++ +  Y+
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKL--QEIQEAYE 171

Length = 174

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 5  KLYEVLGVSKSASDQE--IKKAYRKLAKEFHPDK--NPEAGDKFKEISFAYEVLSDEKKR 60
          +L ++LG+  +A      ++KAY +  KE+HPDK  + E   K K ++  Y+ L +  K 
Sbjct: 12 ELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEE---KMKRLNSLYKKLQEGVKS 68

Query: 61 A 61
          A
Sbjct: 69 A 69

Length = 647

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 24 AYRKLAKEFHPDKNPEAGDKFKEISF--------AYEVLSDEKKRATY 63
          AYR +  + HPD+   AGD  K ++         AY+ L D  KRA Y
Sbjct: 28 AYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARY 75

Length = 176

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVI 142
            D  + L+++LE+ Y GK  ++++ + V 
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVT 29

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
KOG0712|consensus	337		100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0713|consensus	336		100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0715|consensus	288		100.0
KOG0714|consensus	306		99.91
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.84
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.77
KOG0716|consensus	279		99.77
KOG0718|consensus	546		99.76
KOG0691|consensus	296		99.76
KOG0717|consensus	508		99.74
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.72
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.72
KOG0719|consensus	264		99.7
PHA03102	153	Small T antigen; Reviewed	99.7
KOG0624|consensus	504		99.69
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.62
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.59
KOG0721|consensus	230		99.59
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.52
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.46
PRK01356	166	hscB co-chaperone HscB; Provisional	99.45
KOG0550|consensus	486		99.45
PRK05014	171	hscB co-chaperone HscB; Provisional	99.41
PTZ00100	116	DnaJ chaperone protein; Provisional	99.41
KOG0722|consensus	329		99.41
PRK00294	173	hscB co-chaperone HscB; Provisional	99.41
PRK14282	369	chaperone protein DnaJ; Provisional	99.4
PRK03578	176	hscB co-chaperone HscB; Provisional	99.37
PRK14290	365	chaperone protein DnaJ; Provisional	99.35
PRK14294	366	chaperone protein DnaJ; Provisional	99.34
PRK14285	365	chaperone protein DnaJ; Provisional	99.34
PRK14298	377	chaperone protein DnaJ; Provisional	99.33
KOG0720|consensus	490		99.33
PRK10767	371	chaperone protein DnaJ; Provisional	99.28
PRK14279	392	chaperone protein DnaJ; Provisional	99.28
PRK14300	372	chaperone protein DnaJ; Provisional	99.28
PRK14301	373	chaperone protein DnaJ; Provisional	99.27
PHA02624	647	large T antigen; Provisional	99.25
PRK14284	391	chaperone protein DnaJ; Provisional	99.24
PRK14288	369	chaperone protein DnaJ; Provisional	99.24
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.23
PRK14287	371	chaperone protein DnaJ; Provisional	99.23
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.22
PRK14295	389	chaperone protein DnaJ; Provisional	99.22
PRK14278	378	chaperone protein DnaJ; Provisional	99.22
PRK14293	374	chaperone protein DnaJ; Provisional	99.22
PRK14286	372	chaperone protein DnaJ; Provisional	99.2
PRK14281	397	chaperone protein DnaJ; Provisional	99.2
PRK14276	380	chaperone protein DnaJ; Provisional	99.19
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.18
PRK14280	376	chaperone protein DnaJ; Provisional	99.18
PRK14297	380	chaperone protein DnaJ; Provisional	99.16
PRK14289	386	chaperone protein DnaJ; Provisional	99.14
PRK14296	372	chaperone protein DnaJ; Provisional	99.14
PRK14292	371	chaperone protein DnaJ; Provisional	99.12
PRK14277	386	chaperone protein DnaJ; Provisional	99.12
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.1
PRK14291	382	chaperone protein DnaJ; Provisional	99.08
PRK14283	378	chaperone protein DnaJ; Provisional	99.06
PRK01773	173	hscB co-chaperone HscB; Provisional	98.96
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.89
PRK14299	291	chaperone protein DnaJ; Provisional	98.86
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.83
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.79
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.76
KOG1150|consensus	250		98.72
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.67
KOG1789|consensus	2235		98.57
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	98.38
KOG0568|consensus	342		98.18
KOG0723|consensus	112		98.18
KOG0712|consensus	337		98.03
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.85
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	97.82
KOG2813|consensus	406		97.77
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.57
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.15
KOG2813|consensus	406		97.03
KOG3192|consensus	168		96.63
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.42
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.86
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.76
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	94.75
KOG0431|consensus	453		93.03
KOG2824|consensus	281		92.66
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	91.18
KOG0715|consensus	288		90.42
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	90.28
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	89.17
PF13446	62	RPT: A repeated domain in UCH-protein	89.15
smart00709	160	Zpr1 Duplicated domain in the epidermal growth fac	86.28
KOG2824|consensus	281		85.48
TIGR00310	192	ZPR1_znf ZPR1 zinc finger domain.	84.84
PRK04023	1121	DNA polymerase II large subunit; Validated	84.3
KOG0724|consensus	335		83.47
PRK14714	1337	DNA polymerase II large subunit; Provisional	82.69
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	82.23
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	80.13

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-92  Score=664.91  Aligned_cols=332  Identities=40%  Similarity=0.717  Sum_probs=301.7

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG   77 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~   77 (349)
                      |..+|||+||||+++||.+|||||||+||++||||+|+   +|+++|++|++||||||||+||++||+||++++++++.+
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            67899999999999999999999999999999999998   488999999999999999999999999999998743322


Q ss_pred             ----CCCC-ChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCC
Q psy4972          78 ----GGAD-FSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSK  152 (349)
Q Consensus        78 ----~g~~-~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~  152 (349)
                          ++|+ ++.|+|++|||++.+      +..+..+++++.|+.+.|+|||+|||.|+++++.+++.+.|++|+|+|+.
T Consensus        81 g~g~~~fgg~~~DIF~~~FgGg~~------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak  154 (371)
T COG0484          81 GFGFGGFGGDFGDIFEDFFGGGGG------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAK  154 (371)
T ss_pred             CCCcCCCCCCHHHHHHHhhcCCCc------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCC
Confidence                1233 478999999974311      11233457789999999999999999999999999999999999999999


Q ss_pred             CC-CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEE
Q psy4972         153 SG-ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKI  231 (349)
Q Consensus       153 ~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i  231 (349)
                      .+ ...+|++|+|+|++...+++  |+ ++++++|+.|+|+|+++  +++|++|+|.|++...+.++|+||+|+.+|++|
T Consensus       155 ~gt~~~tC~tC~G~G~v~~~~~~--g~-~~~~~~C~~C~G~G~~i--~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~i  229 (371)
T COG0484         155 PGTDPKTCPTCNGSGQVRTVQRT--GF-FSFQQTCPTCNGTGKII--KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRI  229 (371)
T ss_pred             CCCCCCcCCCCCCcCeEEEEEee--eE-EEEEEECCCCccceeEC--CCCCCCCCCCCeEeeeeEEEEECCCCCccCCEE
Confidence            98 58999999999998888777  33 47899999999999999  999999999999999999999999999999999


Q ss_pred             EEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEE
Q psy4972         232 YFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIK  310 (349)
Q Consensus       232 ~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~  310 (349)
                      +++|+|++++ ++++|||||+|+|++|+.|.|+|+||+++++|++.+|++|++++|+||||+ +.|+||+|  +++|+++
T Consensus       230 r~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~  306 (371)
T COG0484         230 RLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVF  306 (371)
T ss_pred             EEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEE
Confidence            9999999997 567899999999999999999999999999999999999999999999998 99999999  6889999


Q ss_pred             EEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972         311 GIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  349 (349)
Q Consensus       311 ~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~  349 (349)
                      ||+|+|||...+. .+|||||+|+|++|++  ||++|+|
T Consensus       307 rl~gkG~p~~~~~-~~GDl~v~v~v~~P~~--ls~~q~~  342 (371)
T COG0484         307 RLRGKGMPKLRSG-GRGDLYVRVKVETPKN--LSDEQKE  342 (371)
T ss_pred             EEcCCCccccCCC-CcCCEEEEEEEEcCCC--CCHHHHH
Confidence            9999999986654 5799999999999999  9999864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=3.1e-85  Score=637.58  Aligned_cols=332  Identities=47%  Similarity=0.872  Sum_probs=302.8

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCC
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGA   80 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~   80 (349)
                      |..+|||++|||+++||.+|||+|||+||++||||+|+. .++|++|++||+||+||++|+.||+||++++.++.   +.
T Consensus        25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~---~~  100 (421)
T PTZ00037         25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE---QP  100 (421)
T ss_pred             ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC---CC
Confidence            456899999999999999999999999999999999974 68999999999999999999999999998765321   12


Q ss_pred             CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCC
Q psy4972          81 DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCA  160 (349)
Q Consensus        81 ~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~  160 (349)
                      .++.|+|+.|||++          .+..+.+++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+...+|+
T Consensus       101 ~d~~d~f~~~Fggg----------~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~  170 (421)
T PTZ00037        101 ADASDLFDLIFGGG----------RKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCK  170 (421)
T ss_pred             cchhhhHHHhhccc----------cccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCC
Confidence            34568899998742          01123457899999999999999999999999999999999999998777788999


Q ss_pred             CCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCC
Q psy4972         161 SCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ  240 (349)
Q Consensus       161 ~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~  240 (349)
                      .|+|+|+++...++++ ++++.+.+|+.|+|+|+++...++|+.|+|.+++.+.+.++|+||+|+++|++|+|+|+|++.
T Consensus       171 ~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~  249 (421)
T PTZ00037        171 LCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEK  249 (421)
T ss_pred             CCCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCC
Confidence            9999999888888887 777899999999999999977899999999999999999999999999999999999999998


Q ss_pred             CCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCC
Q psy4972         241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY  320 (349)
Q Consensus       241 ~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~  320 (349)
                      +++.||||+|+|++++|+.|+|+|+||+++++|+|++||+|+++.|+||||+.|.|+||+|++++||++++|+|+|||..
T Consensus       250 ~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~  329 (421)
T PTZ00037        250 PNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTY  329 (421)
T ss_pred             CCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccC
Confidence            88899999999999999999999999999999999999999999999999998999999999999999999999999987


Q ss_pred             CCCCCCCcEEEEEEEEcC--CCCCCCccccC
Q psy4972         321 KNPYEKGTLYIKFDVQFP--ESYFNNDAKLK  349 (349)
Q Consensus       321 ~~~~~~Gdl~v~~~v~~P--~~~~ls~~q~~  349 (349)
                      ++++.+|||||+|+|.||  +.  ||++|++
T Consensus       330 ~~~~~rGDL~V~~~V~~P~~~~--Ls~~qk~  358 (421)
T PTZ00037        330 KSPFKKGNLYVTFEVIFPVDRK--FTNEEKE  358 (421)
T ss_pred             CCCCCCCCEEEEEEEEcCCCCC--CCHHHHH
Confidence            665578999999999999  77  9998853

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.3e-83  Score=620.35  Aligned_cols=331  Identities=31%  Similarity=0.549  Sum_probs=292.8

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-C
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-G   77 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-~   77 (349)
                      |+.+|||++|||+++|+.+|||+|||+||++||||+|+  +|+++|++|++||+|||||++|+.||+||++++..+.+ +
T Consensus         1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~   80 (372)
T PRK14296          1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFS   80 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcC
Confidence            77899999999999999999999999999999999985  57899999999999999999999999999987653110 1


Q ss_pred             ---CC------------CCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEe
Q psy4972          78 ---GG------------ADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVI  142 (349)
Q Consensus        78 ---~g------------~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~  142 (349)
                         ++            +..+.|+|++|||++     +    ++..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg-----~----~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~  151 (372)
T PRK14296         81 SNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSN-----K----SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTN  151 (372)
T ss_pred             cCCCccccccccccccccccchhhhhhhcCCC-----c----cCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeec
Confidence               11            112345666666531     0    11223457899999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEe
Q psy4972         143 CSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNV  221 (349)
Q Consensus       143 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~I  221 (349)
                      |++|+|+|...+. ..+|+.|+|+|.+...++++| ++++.+++|+.|+|+|+++  +++|+.|+|.+++.+.+.++|.|
T Consensus       152 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~I  228 (372)
T PRK14296        152 CSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKII--KNKCKNCKGKGKYLERKKIEVNI  228 (372)
T ss_pred             cCCCCCCccCCCCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceee--cccccCCCCceEEEEEEEEEEEE
Confidence            9999999998764 789999999999998888888 4447889999999999998  88999999999999999999999


Q ss_pred             cCCCccCcEEEEcCCCCCC-CCCCCccEEEEEEEccCCccccc-cceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcC
Q psy4972         222 DKGMKEMQKIYFRGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQ-GINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP  299 (349)
Q Consensus       222 p~G~~~G~~i~~~g~G~~~-~~~~~GDl~v~i~v~~~~~f~r~-g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip  299 (349)
                      |+|+++|++|+|+|+|++. +++.+|||+|+|++++|+.|+|+ |+||+++++|||++||+|+++.|+||||+ +.|+||
T Consensus       229 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip  307 (372)
T PRK14296        229 PKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLP  307 (372)
T ss_pred             CCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEEC
Confidence            9999999999999999987 46789999999999999999995 89999999999999999999999999998 899999


Q ss_pred             CCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       300 ~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      ++  +++|++++|+|+|||...+++.+|||||+|+|.||+.  ||++|+
T Consensus       308 ~~--t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~--Ls~~q~  352 (372)
T PRK14296        308 KS--INSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKN--LSKKEK  352 (372)
T ss_pred             Cc--cCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCC--CCHHHH
Confidence            87  8999999999999996655556899999999999999  999885

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.1e-81  Score=604.89  Aligned_cols=327  Identities=28%  Similarity=0.551  Sum_probs=285.3

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-CC
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-GG   78 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-~~   78 (349)
                      .+|||+||||+++||.+|||+|||+||++||||+|+   +|+++|++|++||+||+||++|+.||+||++++..+++ ++
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~   81 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS   81 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence            479999999999999999999999999999999986   37899999999999999999999999999987753221 11


Q ss_pred             CCCC----hhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCC
Q psy4972          79 GADF----SDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG  154 (349)
Q Consensus        79 g~~~----~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~  154 (349)
                      ++.+    +.++|+.|||+     ++ . +....++++++|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|....
T Consensus        82 ~~~~~f~~~~~~F~~~fg~-----g~-~-~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~  154 (369)
T PRK14288         82 DFSDFFEDLGSFFEDAFGF-----GA-R-GSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK  154 (369)
T ss_pred             ccccchhhHHHHHHhhcCC-----CC-c-ccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC
Confidence            2222    22344444431     11 0 011123457899999999999999999999999999999999999999887


Q ss_pred             CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEc
Q psy4972         155 ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR  234 (349)
Q Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~  234 (349)
                      ...+|+.|+|+|.+...+    |++ +++++|+.|.|+|+++  .++|+.|+|.+++.+.+.++|.||||+++|++|+|+
T Consensus       155 ~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~  227 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQ----GFM-SFAQTCGACQGKGKII--KTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLK  227 (369)
T ss_pred             CCcCCCCCCCCcEEEEEe----ceE-EEEEecCCCCCCceEc--cccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEc
Confidence            788999999999865433    444 5677999999999998  788999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcC
Q psy4972         235 GEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG  314 (349)
Q Consensus       235 g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g  314 (349)
                      |+|++.+++.+|||+|+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||+.+.|+||++  +++|++++|+|
T Consensus       228 g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g  305 (369)
T PRK14288        228 NKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRN  305 (369)
T ss_pred             cCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcC
Confidence            9999988888999999999999999999999999999999999999999999999998889999987  89999999999


Q ss_pred             CCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         315 EGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       315 ~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +|||..+. ..+|||||+|+|.||++  ||++|+
T Consensus       306 ~G~p~~~~-~~~GDL~v~~~v~~P~~--ls~~q~  336 (369)
T PRK14288        306 EGVKHPES-SYRGSLIVELQVIYPKS--LNKEQQ  336 (369)
T ss_pred             CCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence            99997653 35899999999999999  999885

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.7e-80  Score=597.77  Aligned_cols=333  Identities=34%  Similarity=0.666  Sum_probs=291.7

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccccccc--
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKA--   75 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~--   75 (349)
                      |.++|||++|||+++|+.+|||+|||+||++||||+|+   +++++|++|++||+||+||++|+.||+||+++++.+.  
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~   80 (372)
T PRK14286          1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGG   80 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCC
Confidence            67799999999999999999999999999999999985   4679999999999999999999999999998765321  


Q ss_pred             -CCCC-------CCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCC
Q psy4972          76 -GGGG-------ADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCN  147 (349)
Q Consensus        76 -~~~g-------~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~  147 (349)
                       +.++       +.++.|+|++|||++.   +++.++++..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~d~f~~ffgg~~---~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~  157 (372)
T PRK14286         81 FGQGAYTDFSDIFGDFGDIFGDFFGGGR---GGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCN  157 (372)
T ss_pred             CCCCCcccccccccchhhHHHHhhCCCc---cCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCc
Confidence             1111       1235688999997531   1100001122345789999999999999999999999999999999999


Q ss_pred             CCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCc
Q psy4972         148 GKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK  226 (349)
Q Consensus       148 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~  226 (349)
                      |+|...+. ..+|+.|+|+|++....    |++ +++++|+.|+|+|+++  .++|+.|+|.+++.+.+.++|+||+|++
T Consensus       158 G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~~~~~~~l~V~Ip~G~~  230 (372)
T PRK14286        158 GSGASKGSSPTTCPDCGGSGQIRRTQ----GFF-SVATTCPTCRGKGTVI--SNPCKTCGGQGLQEKRRTINIKIPPGVE  230 (372)
T ss_pred             CCCcCCCCCCccCCCCcCeEEEEEEe----ceE-EEEEeCCCCCceeeEe--cccCCCCCCCcEEecceEEEEEECCCCC
Confidence            99998764 68999999999875542    555 5788999999999998  7899999999999999999999999999


Q ss_pred             cCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcC
Q psy4972         227 EMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK  305 (349)
Q Consensus       227 ~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~  305 (349)
                      +|++|+|+|+|++.++ ..+|||||+|++++|+.|+|+|+||++++.|+|++|++|+++.|+||||+++.|+||++  ++
T Consensus       231 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~  308 (372)
T PRK14286        231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TE  308 (372)
T ss_pred             CCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cC
Confidence            9999999999999864 56799999999999999999999999999999999999999999999999899999988  89


Q ss_pred             CCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         306 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       306 ~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +|++++|+|+|||..+. ..+|||||+|+|.||+.  ||++|+
T Consensus       309 ~g~~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~--Ls~~qk  348 (372)
T PRK14286        309 SGQVFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKK--ITRRQR  348 (372)
T ss_pred             CCcEEEECCCCCCCCCC-CCCCcEEEEEEEECCCC--CCHHHH
Confidence            99999999999997654 36899999999999999  999885

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.2e-80  Score=597.81  Aligned_cols=329  Identities=35%  Similarity=0.616  Sum_probs=292.9

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC----
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG----   76 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~----   76 (349)
                      .+|||+||||+++|+.+|||+|||+||++||||+|+  +++++|++|++||++|+||.+|+.||+||++++..+.+    
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~   83 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI   83 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence            689999999999999999999999999999999995  57799999999999999999999999999987653211    


Q ss_pred             --CCCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCC
Q psy4972          77 --GGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG  154 (349)
Q Consensus        77 --~~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~  154 (349)
                        +++++++.|+|++|||++    ++    .+..+++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+
T Consensus        84 ~~~~~~~~~~d~f~~~Fgg~----~~----~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~  155 (377)
T PRK14298         84 FRGADFGGFGDIFEMFFGGG----GR----RGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPG  155 (377)
T ss_pred             cccCCcCcchhhhHhhhcCC----Cc----cCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCC
Confidence              112334568899998742    10    01123457899999999999999999999999999999999999999887


Q ss_pred             C-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEE
Q psy4972         155 A-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYF  233 (349)
Q Consensus       155 ~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~  233 (349)
                      . ..+|+.|+|+|++...+++++|+ ++++.+|+.|+|+|+++  .++|+.|+|++++.+.++++|.||||+++|++|+|
T Consensus       156 ~~~~~C~~C~G~G~~~~~~~~~~g~-~~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~  232 (377)
T PRK14298        156 TSPKRCPTCGGTGQVTTTRSTPLGQ-FVTTTTCSTCHGRGQVI--ESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKL  232 (377)
T ss_pred             CCCCcCCCCCCccEEEEEEecCcee-EEEEEeCCCCCCCCccc--CCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEE
Confidence            5 68999999999988877754444 48999999999999998  78999999999999999999999999999999999


Q ss_pred             cCCCCCC-CCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEE
Q psy4972         234 RGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGI  312 (349)
Q Consensus       234 ~g~G~~~-~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l  312 (349)
                      +|+|++. .++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+||||+ +.|+||++  +++|++++|
T Consensus       233 ~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri  309 (377)
T PRK14298        233 SGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRL  309 (377)
T ss_pred             ecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEE
Confidence            9999997 4678999999999999999999999999999999999999999999999997 78999998  799999999


Q ss_pred             cCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         313 VGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       313 ~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +|+|||..+. ..+|||||+|+|.||+.  |+++|+
T Consensus       310 ~g~G~p~~~~-~~~GDL~V~~~V~~P~~--ls~~~~  342 (377)
T PRK14298        310 KDKGMPRLHG-HGKGDQLVKVIVKTPTK--LTQEQK  342 (377)
T ss_pred             CCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence            9999997654 36899999999999999  998874

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.3e-80  Score=595.05  Aligned_cols=332  Identities=30%  Similarity=0.588  Sum_probs=296.4

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG--   76 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--   76 (349)
                      |+.+|||++|||+++|+.+|||+|||+||++||||+|+  +++++|++|++||++|+||++|+.||+||++++..+.+  
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~   80 (371)
T PRK14287          1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGG   80 (371)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCC
Confidence            67789999999999999999999999999999999995  57889999999999999999999999999987753211  


Q ss_pred             -CCCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC
Q psy4972          77 -GGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA  155 (349)
Q Consensus        77 -~~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~  155 (349)
                       .++|.++.|+|++|||++    ++ .  .....+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+.
T Consensus        81 ~~~~f~~~~d~f~~~fgg~----~~-~--~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~  153 (371)
T PRK14287         81 GAGDFGGFSDIFDMFFGGG----GG-R--RNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGT  153 (371)
T ss_pred             CCccccchHHHHHhhhccc----cC-C--CCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCC
Confidence             122344568999998742    11 0  111224578999999999999999999999999999999999999988764


Q ss_pred             -cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEc
Q psy4972         156 -TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR  234 (349)
Q Consensus       156 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~  234 (349)
                       ..+|+.|+|+|++...+++++|+++ .+.+|+.|.|+|+++  .++|..|.|.+++.+.+.++|.||+|+++|++|+|+
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~  230 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVV-NRRVCHHCEGTGKII--KQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS  230 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEE-EEEeCCCCCCCCccc--cccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence             7889999999999999999999985 477999999999998  788999999999999999999999999999999999


Q ss_pred             CCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEc
Q psy4972         235 GEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIV  313 (349)
Q Consensus       235 g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~  313 (349)
                      |+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|+||+ +.|+||++  +++|++++|+
T Consensus       231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~  307 (371)
T PRK14287        231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLR  307 (371)
T ss_pred             cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEc
Confidence            9999975 467899999999999999999999999999999999999999999999997 89999998  7999999999


Q ss_pred             CCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         314 GEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       314 g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      |+|||..++. .+|||||+|+|.+|+.  |+++|+
T Consensus       308 g~G~p~~~~~-~~GDL~V~~~v~~P~~--l~~~q~  339 (371)
T PRK14287        308 GKGVPNVHGR-GQGDQHVQVRVVTPKN--LTEKEK  339 (371)
T ss_pred             CCCccCCCCC-CCCCEEEEEEEEcCCC--CCHHHH
Confidence            9999976543 5899999999999999  998885

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.6e-80  Score=595.97  Aligned_cols=332  Identities=33%  Similarity=0.602  Sum_probs=296.1

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG--   76 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--   76 (349)
                      |+++|||+||||+++||.+|||+|||+||++||||+|+  .++++|++|++||++|+||++|+.||+||+++++++.+  
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~   80 (380)
T PRK14276          1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGG   80 (380)
T ss_pred             CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCC
Confidence            67799999999999999999999999999999999985  57899999999999999999999999999987753211  


Q ss_pred             --C-C------CCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCC
Q psy4972          77 --G-G------GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCN  147 (349)
Q Consensus        77 --~-~------g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~  147 (349)
                        + +      ++.++.|+|++|||++    ++.   .....++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~d~f~~~fgg~----~~~---~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~  153 (380)
T PRK14276         81 AGGFGGFDGSGGFGGFEDIFSSFFGGG----GAR---RNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCN  153 (380)
T ss_pred             CCCCCCccccccccchhhHHHHHhCcc----ccc---cCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCc
Confidence              0 1      1234568899998742    110   1112345789999999999999999999999999999999999


Q ss_pred             CCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCc
Q psy4972         148 GKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK  226 (349)
Q Consensus       148 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~  226 (349)
                      |+|...+. ..+|+.|+|+|.+...+++++|+++ .+.+|+.|+|+|+++  +++|+.|+|.+++.+.++++|.||+|++
T Consensus       154 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~~~~~~~l~V~Ip~G~~  230 (380)
T PRK14276        154 GSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMR-RQVTCDVCHGTGKEI--KEPCQTCHGTGHEKQAHTVSVKIPAGVE  230 (380)
T ss_pred             CcccCCCCCCccCCCCCCeeEEEEEEecCCceEE-EEEECCCCCCCCccc--cCCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence            99998764 7899999999999999999999985 478999999999998  7899999999999999999999999999


Q ss_pred             cCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcC
Q psy4972         227 EMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK  305 (349)
Q Consensus       227 ~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~  305 (349)
                      +|++|+|+|+|++.++ ..+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|+||+ +.|+||++  ++
T Consensus       231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~  307 (380)
T PRK14276        231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQ  307 (380)
T ss_pred             CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CC
Confidence            9999999999999754 56799999999999999999999999999999999999999999999997 78999998  79


Q ss_pred             CCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         306 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       306 ~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +|++++|+|+|||..+. ..+|||||+|+|.||+.  ||++|+
T Consensus       308 ~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~--l~~~q~  347 (380)
T PRK14276        308 TGKKFRLRGKGAPKLRG-GGNGDQHVTVNIVTPTK--LNDAQK  347 (380)
T ss_pred             CCCEEEECCCCcCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence            99999999999997654 35799999999999999  999885

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-79  Score=593.11  Aligned_cols=331  Identities=34%  Similarity=0.610  Sum_probs=292.9

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHHHHhccchhhhhhhhcccccccccccC----C
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE--AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG----G   77 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~----~   77 (349)
                      +|||+||||+++|+.+|||+|||+||++||||+|++  ++++|++|++||+||+||++|+.||+||++...+++.    +
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~   82 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG   82 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence            799999999999999999999999999999999975  6789999999999999999999999999864322111    1


Q ss_pred             CCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-c
Q psy4972          78 GGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-T  156 (349)
Q Consensus        78 ~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~  156 (349)
                      ++|.+++|+|++|||++    ++.  ......++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+. .
T Consensus        83 ~~f~~~~d~f~~ffgg~----g~~--~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~  156 (378)
T PRK14278         83 GGFGGLGDVFEAFFGGG----AAS--RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKP  156 (378)
T ss_pred             cCcCchhHHHHHHhCCC----CCC--CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCc
Confidence            12344568999999742    100  0111234578999999999999999999999999999999999999998764 7


Q ss_pred             ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCC
Q psy4972         157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGE  236 (349)
Q Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~  236 (349)
                      .+|+.|+|+|++...+++++|+++ .+++|+.|+|.|+++  .++|+.|+|++++.+.+.++|.||||+++|++|+|+|+
T Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~  233 (378)
T PRK14278        157 VTCDTCGGRGEVQTVQRSFLGQVM-TSRPCPTCRGVGEVI--PDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQ  233 (378)
T ss_pred             eecCCccCceEEEEEEeccceeEE-EEEECCCCCccceee--CCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccC
Confidence            899999999998888888888884 567999999999998  78899999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCC
Q psy4972         237 GDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGE  315 (349)
Q Consensus       237 G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~  315 (349)
                      |++.++ +.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|||+..+.|+||++  +++|++++|+|+
T Consensus       234 G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~  311 (378)
T PRK14278        234 GEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGR  311 (378)
T ss_pred             cCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCC
Confidence            999875 56799999999999999999999999999999999999999999999777899999998  899999999999


Q ss_pred             CcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         316 GMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       316 G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      |||..+. ..+|||||+|+|.||++  ||++|+
T Consensus       312 G~p~~~~-~~~GDL~V~~~V~~P~~--Ls~~qk  341 (378)
T PRK14278        312 GMPHLRS-GGRGDLHAHVEVVVPTR--LDHEDI  341 (378)
T ss_pred             CCCCCCC-CCCCCEEEEEEEEcCCC--CCHHHH
Confidence            9997653 36899999999999999  999885

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.2e-79  Score=592.75  Aligned_cols=332  Identities=35%  Similarity=0.630  Sum_probs=295.5

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC-
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG-   77 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-   77 (349)
                      |+.+|||+||||+++|+.+|||+|||+||++||||+|+  .++++|++|++||++|+||.+|+.||+||++++..+.++ 
T Consensus         1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   80 (376)
T PRK14280          1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGG   80 (376)
T ss_pred             CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCC
Confidence            67789999999999999999999999999999999985  578999999999999999999999999999877532111 


Q ss_pred             ----CCCC---ChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCC
Q psy4972          78 ----GGAD---FSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG  150 (349)
Q Consensus        78 ----~g~~---~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G  150 (349)
                          +++.   +++|+|++|||++    +.  + .....++++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus        81 ~~~~~~~~~~~~~~d~f~~~fgg~----~~--~-~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G  153 (376)
T PRK14280         81 GFGGGDFGGGFGFEDIFSSFFGGG----GR--R-RDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSG  153 (376)
T ss_pred             CCCCCCccccccchhhHHHHhCCc----cc--c-CcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcc
Confidence                1111   3568899998742    10  0 0112345789999999999999999999999999999999999999


Q ss_pred             CCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCc
Q psy4972         151 SKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQ  229 (349)
Q Consensus       151 ~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~  229 (349)
                      ...+. ...|+.|+|+|.+...+++++|+++ .+.+|+.|+|+|+++  .++|+.|+|++++.+.+.++|.||+|+++|+
T Consensus       154 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~  230 (376)
T PRK14280        154 AKPGTSKETCSHCGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEI--KEKCPTCHGKGKVRKRKKINVKIPAGVDNGQ  230 (376)
T ss_pred             cCCCCCCccCCCCCCEEEEEEEeecCCceEE-EEEEcCCCCCCCcee--cCCCCCCCCceEEEEEEEEEEEeCCCCcCCc
Confidence            88764 7899999999999888889999885 678999999999998  7899999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCc
Q psy4972         230 KIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPED  308 (349)
Q Consensus       230 ~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~  308 (349)
                      +|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||++++.|||++||+|+++.|+||||+ +.|+||++  +++|+
T Consensus       231 ~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~  307 (376)
T PRK14280        231 QIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGT  307 (376)
T ss_pred             EEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCc
Confidence            9999999999754 67899999999999999999999999999999999999999999999996 88999998  89999


Q ss_pred             EEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         309 IKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       309 ~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +++|+|+|||..++ ..+|||||+|+|.||+.  ||++|+
T Consensus       308 ~~~i~g~G~p~~~~-~~~GDL~v~~~v~~P~~--Ls~~q~  344 (376)
T PRK14280        308 QFRLKGKGVPNVRG-YGQGDQYVVVRVVTPTK--LTDRQK  344 (376)
T ss_pred             EEEEcCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence            99999999997654 36899999999999999  999885

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.5e-79  Score=590.45  Aligned_cols=334  Identities=34%  Similarity=0.626  Sum_probs=293.8

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG--   76 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--   76 (349)
                      +.+|||+||||+++|+.+|||+|||+||++||||+|+   +++++|++|++||+||+||.+|+.||+||+++++.+..  
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14277          3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ   82 (386)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence            3589999999999999999999999999999999986   36789999999999999999999999999887653110  


Q ss_pred             ---C-CC-----C----CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEec
Q psy4972          77 ---G-GG-----A----DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVIC  143 (349)
Q Consensus        77 ---~-~g-----~----~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C  143 (349)
                         + ++     +    .++.|+|++||++. |  |+. +..+..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~-f--gg~-~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C  158 (386)
T PRK14277         83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF-F--GTG-RRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKC  158 (386)
T ss_pred             CCcCCCCccccCccccccchhHHHHHhhccc-c--cCC-CcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccC
Confidence               0 11     1    23457888888642 2  221 00111234578999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEec
Q psy4972         144 STCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD  222 (349)
Q Consensus       144 ~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip  222 (349)
                      ++|+|+|...+. ..+|+.|+|+|++...+++++|++++. ++|+.|+|+|+++  .++|+.|+|++++.+.+.++|.||
T Consensus       159 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip  235 (386)
T PRK14277        159 DVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKII--TDPCNKCGGTGRIRRRRKIKVNIP  235 (386)
T ss_pred             CCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeec--cCCCCCCCCCcEEeeeeEEEEecC
Confidence            999999998764 789999999999999999999998654 7999999999998  789999999999999999999999


Q ss_pred             CCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCC
Q psy4972         223 KGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPG  301 (349)
Q Consensus       223 ~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~  301 (349)
                      +|+++|++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|++||+|+++.|+||||+ +.|+||++
T Consensus       236 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g  314 (386)
T PRK14277        236 AGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG  314 (386)
T ss_pred             CCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC
Confidence            9999999999999999864 467899999999999999999999999999999999999999999999997 89999998


Q ss_pred             CCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         302 EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       302 ~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                        +++|++++|+|+|||..++. .+|||||+|+|.||+.  ||++|+
T Consensus       315 --~~~g~~~ri~g~G~p~~~~~-~~GDL~v~~~V~~P~~--Ls~~qk  356 (386)
T PRK14277        315 --TQTGTKFRLRGKGIPHLRGR-GRGDQIVKVYIEVPKK--LTEKQK  356 (386)
T ss_pred             --CCCCCEEEECCCCCCCCCCC-CCCCEEEEEEEEeCCC--CCHHHH
Confidence              79999999999999976643 6899999999999999  999885

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-78  Score=584.14  Aligned_cols=328  Identities=36%  Similarity=0.673  Sum_probs=290.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC---
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG---   76 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~---   76 (349)
                      .+|||++|||+++||.+|||+|||+||++||||+|+   ++.++|++|++||++|+||.+|+.||+||+.++.++++   
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~   81 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG   81 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence            479999999999999999999999999999999986   36789999999999999999999999999987653211   


Q ss_pred             -CCC-------CCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCC
Q psy4972          77 -GGG-------ADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNG  148 (349)
Q Consensus        77 -~~g-------~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G  148 (349)
                       .++       +.++.|+|++|||++.   +.    .+..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|++|+|
T Consensus        82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~---~~----~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G  154 (365)
T PRK14285         82 FSGGFSGFSDIFEDFGDIFDSFFTGNR---GQ----DKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLG  154 (365)
T ss_pred             cCCCccccccccccHHHHHHHhhcCCc---CC----CCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCC
Confidence             011       1235688888887421   10    11123457899999999999999999999999999999999999


Q ss_pred             CCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCcc
Q psy4972         149 KGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKE  227 (349)
Q Consensus       149 ~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~  227 (349)
                      +|...+. ...|+.|+|+|++..    ++|++ +++.+|+.|.|.|+++  .++|..|+|.+++.+.+.++|+||||+++
T Consensus       155 ~G~~~~~~~~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~  227 (365)
T PRK14285        155 KKSEKGTSPSICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKII--SNPCKSCKGKGSLKKKETIELKIPAGIDD  227 (365)
T ss_pred             cccCCCCCCccCCCccCceeEEe----cCcee-EEeeecCCCCCccccc--CCCCCCCCCCCEEeccEEEEEEECCCCCC
Confidence            9998764 789999999998653    56777 7899999999999998  78999999999999999999999999999


Q ss_pred             CcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCC
Q psy4972         228 MQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKP  306 (349)
Q Consensus       228 G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~  306 (349)
                      |++|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||+++++|||.+||+|++++|+||||+++.|+||++  +++
T Consensus       228 G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~  305 (365)
T PRK14285        228 NQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TEN  305 (365)
T ss_pred             CCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCC
Confidence            999999999999875 56899999999999999999999999999999999999999999999999899999998  899


Q ss_pred             CcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972         307 EDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  349 (349)
Q Consensus       307 g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~  349 (349)
                      |++++|+|+|||..+.. .+|||||+|+|.+|+.  |+++|++
T Consensus       306 g~~irl~GkG~p~~~~~-~~GDL~V~~~v~~P~~--l~~~q~~  345 (365)
T PRK14285        306 DEQIIIKNEGMPILHTE-KFGNLILIIKIKTPKN--LNSNAIK  345 (365)
T ss_pred             CcEEEECCCCccCCCCC-CCCCEEEEEEEECCCC--CCHHHHH
Confidence            99999999999976643 5799999999999999  9988853

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.1e-78  Score=583.69  Aligned_cols=334  Identities=32%  Similarity=0.594  Sum_probs=293.0

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhcccccccccc--
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK--   74 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~--   74 (349)
                      |+.+|||+||||+++||.+|||+|||+||++||||+|+.    ++++|++|++||++|+||++|+.||+||++++...  
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~   80 (369)
T PRK14282          1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQ   80 (369)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccc
Confidence            677999999999999999999999999999999999863    57899999999999999999999999998775421  


Q ss_pred             --cCCCCC-C----Ch-----hhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEe
Q psy4972          75 --AGGGGA-D----FS-----DDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVI  142 (349)
Q Consensus        75 --~~~~g~-~----~~-----~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~  142 (349)
                        .+++++ .    .+     .|+|++|||++    ++  +..+...+.+++|+.+.|.|||+|+|+|+++++.+.+.+.
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~----~~--~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~  154 (369)
T PRK14282         81 ETESGGGFFEDIFKDFENIFNRDIFDIFFGER----RT--QEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYET  154 (369)
T ss_pred             cCCCCCcccccccccccccccchhhhHhhccc----CC--cccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeeccc
Confidence              111121 1    01     26677777531    11  0011123457899999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEe
Q psy4972         143 CSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNV  221 (349)
Q Consensus       143 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~I  221 (349)
                      |++|+|+|...+. ..+|+.|+|+|.++..+++++|+++ .+++|+.|+|+|+++  .++|+.|+|++++.+.++++|+|
T Consensus       155 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~I  231 (369)
T PRK14282        155 CPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFV-SERTCERCGGTGKIP--GEYCHECGGSGRIRRRVRTTVKI  231 (369)
T ss_pred             CCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceE-EEEECCCCCCcceeC--CCCCCCCCCceeEEEEEEEEEEe
Confidence            9999999998764 7899999999999999999999985 577999999999998  78999999999999999999999


Q ss_pred             cCCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCC
Q psy4972         222 DKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP  300 (349)
Q Consensus       222 p~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~  300 (349)
                      |||+++|++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.||++|++++|+|+||+++.|+||+
T Consensus       232 p~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~  311 (369)
T PRK14282        232 PAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPP  311 (369)
T ss_pred             CCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCC
Confidence            99999999999999999875 46789999999999999999999999999999999999999999999999989999999


Q ss_pred             CCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         301 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       301 ~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +  +++|++++|+|+|||..+. ..+|||||+|+|.+|+.  |+.+|+
T Consensus       312 g--~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~--l~~~~~  354 (369)
T PRK14282        312 G--TQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKR--LSREER  354 (369)
T ss_pred             C--cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence            8  8999999999999997543 35899999999999999  988774

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.4e-78  Score=585.57  Aligned_cols=335  Identities=34%  Similarity=0.636  Sum_probs=296.3

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-   76 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-   76 (349)
                      |..+|||++|||+++|+.+|||+|||+||++||||+|+   +++++|++|++||++|+||.+|+.||+||+++++.+++ 
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~   80 (380)
T PRK14297          1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGF   80 (380)
T ss_pred             CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCC
Confidence            66789999999999999999999999999999999996   46799999999999999999999999999987753211 


Q ss_pred             -CCC---C-----CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCC
Q psy4972          77 -GGG---A-----DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCN  147 (349)
Q Consensus        77 -~~g---~-----~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~  147 (349)
                       .++   +     .++.|+|++|||+++   ++.  +.+...+++++|+.+.|.|||+|+|+|+++++.+.+.+.|++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~---g~~--~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~  155 (380)
T PRK14297         81 GSGGFGGFDFSDMGGFGDIFDSFFGGGF---GSS--SRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCN  155 (380)
T ss_pred             CCCCCCCcCcccccchhHHHHHHhccCc---ccc--ccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcc
Confidence             011   1     134688999997521   111  01112345789999999999999999999999999999999999


Q ss_pred             CCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCc
Q psy4972         148 GKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK  226 (349)
Q Consensus       148 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~  226 (349)
                      |+|...+. ..+|+.|+|+|++...+++++|++ +.+.+|+.|+|+|+++  .++|..|+|.+++.+.+.++|.||+|++
T Consensus       156 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~i~V~Ip~G~~  232 (380)
T PRK14297        156 GTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSF-VSTTTCDKCGGSGKVI--EDPCNKCHGKGKVRKNRKIKVNVPAGVD  232 (380)
T ss_pred             cccccCCCcCccCCCccCeEEEEEEEEcCCcee-EEEEeCCCCCCCceEc--CCCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence            99998764 789999999999998889999987 4688999999999998  7899999999999999999999999999


Q ss_pred             cCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcC
Q psy4972         227 EMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK  305 (349)
Q Consensus       227 ~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~  305 (349)
                      +|++|+|+|+|++.+. ..+|||+|+|++++|+.|+|+|+||++++.|+|++||+|++++|+|+||+ +.|+||++  ++
T Consensus       233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~  309 (380)
T PRK14297        233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQ  309 (380)
T ss_pred             CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cC
Confidence            9999999999998754 57899999999999999999999999999999999999999999999996 88999998  89


Q ss_pred             CCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972         306 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  349 (349)
Q Consensus       306 ~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~  349 (349)
                      +|+++||+|+|||..+. ..+|||||+|+|.||+.  ||++|++
T Consensus       310 ~g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~--ls~~q~~  350 (380)
T PRK14297        310 PGTVFRLKGKGVPRVNS-TGRGNQYVTVIVDIPKK--LNSKQKE  350 (380)
T ss_pred             CCCEEEEcCCCcCCCCC-CCCCcEEEEEEEEcCCC--CCHHHHH
Confidence            99999999999997653 36899999999999999  9998853

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.8e-78  Score=585.29  Aligned_cols=338  Identities=38%  Similarity=0.682  Sum_probs=292.8

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccccccc---C
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKA---G   76 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~---~   76 (349)
                      .+|||+||||+++|+.+|||+|||+||++||||+|+   +++++|++|++||++|+||.+|+.||+||++++....   +
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~   81 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG   81 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence            379999999999999999999999999999999986   3678999999999999999999999999998765311   1


Q ss_pred             CC----CCCChhhHH---HhhhcCCC-------CCCCCCCCCC-C-C--CCCCCCCCeeeeEEeChhhhhcCCcceeeee
Q psy4972          77 GG----GADFSDDLI---SQLFGGRL-------FGMGGPFGGH-S-R--GRPHRGEDTVHPLKVSLEDLYNGKTTKLQLT  138 (349)
Q Consensus        77 ~~----g~~~~~d~f---~~~fg~~~-------~~~g~~~~~~-~-~--~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~  138 (349)
                      ++    ++.+++|+|   ++|||++.       ++|.+.++++ . .  ..+.++.|+.+.|.|||+|+|+|+++++.+.
T Consensus        82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~  161 (397)
T PRK14281         82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK  161 (397)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence            11    111244665   47787421       1111101111 1 1  1224689999999999999999999999999


Q ss_pred             eeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEE
Q psy4972         139 KSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLE  218 (349)
Q Consensus       139 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~  218 (349)
                      +.+.|++|+|+|...+...+|+.|+|+|.+...+++++|+++ .+++|+.|+|+|+++  +++|+.|+|++++...++++
T Consensus       162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~  238 (397)
T PRK14281        162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFV-NITACPTCGGEGRVV--KDRCPACYGEGIKQGEVTVK  238 (397)
T ss_pred             eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEE-EEEecCCCcceeeee--CCCCCCCCCCccEecceEEE
Confidence            999999999999988778899999999999888889998885 477999999999998  78999999999999999999


Q ss_pred             EEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEE
Q psy4972         219 VNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLIT  297 (349)
Q Consensus       219 v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~  297 (349)
                      |+||+|+++|++|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||++++.|+|.+||+|++++|+||||+ +.|+
T Consensus       239 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~  317 (397)
T PRK14281        239 VTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLT  317 (397)
T ss_pred             EecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEE
Confidence            999999999999999999999864 68999999999999999999999999999999999999999999999996 8899


Q ss_pred             cCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972         298 HPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  349 (349)
Q Consensus       298 ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~  349 (349)
                      ||++  +++|++++|+|+|||..+. ..+|||||+|+|.||+.  ||++|++
T Consensus       318 ip~g--~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~--Ls~~qk~  364 (397)
T PRK14281        318 IPAG--TQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKE--VSHQDKE  364 (397)
T ss_pred             eCCc--cCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCC--CCHHHHH
Confidence            9998  8999999999999997654 36899999999999999  9998853

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-77  Score=582.85  Aligned_cols=332  Identities=32%  Similarity=0.568  Sum_probs=277.7

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccc-----
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK-----   74 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~-----   74 (349)
                      .+|||+||||+++|+.+|||+|||+||++||||+|+   +|+++|++|++||+|||||+||+.||+||+++..++     
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~   87 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR   87 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence            479999999999999999999999999999999997   467999999999999999999999999997432111     


Q ss_pred             --c-CC-CCC--------CChhhHHHhhhcCC------CCC--CCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcce
Q psy4972          75 --A-GG-GGA--------DFSDDLISQLFGGR------LFG--MGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTK  134 (349)
Q Consensus        75 --~-~~-~g~--------~~~~d~f~~~fg~~------~~~--~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~  134 (349)
                        + ++ ++|        .+++++|+..++++      +|+  |++..+..+...+.+++|+.+.|.|||+|+|+|++++
T Consensus        88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~  167 (392)
T PRK14279         88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMP  167 (392)
T ss_pred             ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEE
Confidence              0 00 111        11122221110000      010  1110000112234578999999999999999999999


Q ss_pred             eeeeeeEeccCCCCCCCCCC-CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEe
Q psy4972         135 LQLTKSVICSTCNGKGSKSG-ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSV  213 (349)
Q Consensus       135 i~~~~~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~  213 (349)
                      +.+.+.+.|++|+|+|...+ ...+|+.|+|+|++...+    |++ +++++|+.|+|+|+++  +++|..|.|++++.+
T Consensus       168 v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~i--~~~C~~C~G~g~v~~  240 (392)
T PRK14279        168 LRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAF-GFSEPCTDCRGTGSII--EDPCEECKGTGVTTR  240 (392)
T ss_pred             EeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cce-EEEEecCCCCceeEEe--CCcCCCCCCCeEEEE
Confidence            99999999999999999876 478999999999876543    333 5779999999999998  789999999999999


Q ss_pred             eEEEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCc
Q psy4972         214 KKVLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDR  292 (349)
Q Consensus       214 ~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~  292 (349)
                      .+.++|.||||+++|++|+|+|+|++.++ +.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|+||+
T Consensus       241 ~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~  320 (392)
T PRK14279        241 TRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP  320 (392)
T ss_pred             eeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCce
Confidence            99999999999999999999999999864 56799999999999999999999999999999999999999999999996


Q ss_pred             EEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         293 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       293 ~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                       +.|+||++  +++|++++|+|+|||...  +.+|||||+|+|.||++  ||++|+
T Consensus       321 -i~v~Ip~g--~~~g~~iri~g~G~p~~~--~~~GDL~I~~~v~~P~~--Ls~~q~  369 (392)
T PRK14279        321 -VGVKVPAG--TADGRILRVRGRGVPKRS--GGAGDLLVTVKVAVPPN--LDGAAA  369 (392)
T ss_pred             -EEEEECCC--CCCCCEEEECCCCCCCCC--CCCCCEEEEEEEECCCC--CCHHHH
Confidence             88999998  899999999999999643  46899999999999999  999885

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.9e-77  Score=576.94  Aligned_cols=329  Identities=36%  Similarity=0.657  Sum_probs=287.0

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG   77 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~   77 (349)
                      |..+|||++|||+++||.+|||+|||+||++||||+|+.   ++++|++|++||+||+||.+|+.||+||++++.++++.
T Consensus         1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~   80 (373)
T PRK14301          1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGF   80 (373)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCC
Confidence            567899999999999999999999999999999999863   67899999999999999999999999999877532211


Q ss_pred             CCC-------CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCC
Q psy4972          78 GGA-------DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG  150 (349)
Q Consensus        78 ~g~-------~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G  150 (349)
                      +++       ..+.|+|++|||.+     +. ++.+..++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|
T Consensus        81 ~g~~~~~~~~~~f~d~f~~~fg~g-----~~-~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G  154 (373)
T PRK14301         81 GGFSSAEDIFSHFSDIFGDLFGFS-----GG-GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG  154 (373)
T ss_pred             CCcccccccccchHHHHHHHhhcc-----Cc-ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence            222       22346676666521     11 001122345789999999999999999999999999999999999999


Q ss_pred             CCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCc
Q psy4972         151 SKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQ  229 (349)
Q Consensus       151 ~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~  229 (349)
                      ...+. ..+|+.|+|+|.+...  .  |++ +++.+|+.|+|.|+++  .++|+.|+|.+++.+.+.++|+||+|+++|+
T Consensus       155 ~~~~~~~~~C~~C~G~G~v~~~--~--G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  227 (373)
T PRK14301        155 AAPGTSPETCRHCGGSGQVRQS--Q--GFF-QIAVPCPVCRGEGRVI--THPCPKCKGSGIVQQTRELKVRIPAGVDTGS  227 (373)
T ss_pred             cCCCCCCcccCCccCeeEEEEE--e--eeE-EEEEeCCCCCceeeec--CCCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence            98764 7899999999987643  2  454 5699999999999998  7899999999999999999999999999999


Q ss_pred             EEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCc
Q psy4972         230 KIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPED  308 (349)
Q Consensus       230 ~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~  308 (349)
                      +|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+||||+ +.|+||++  +++|+
T Consensus       228 ~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~  304 (373)
T PRK14301        228 RLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGE  304 (373)
T ss_pred             EEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCc
Confidence            999999999875 467899999999999999999999999999999999999999999999997 89999998  89999


Q ss_pred             EEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         309 IKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       309 ~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +++|+|+|||..+. ..+|||||+|+|.||+.  |+++|+
T Consensus       305 ~~ri~g~G~p~~~~-~~~GDL~I~~~V~~P~~--l~~~q~  341 (373)
T PRK14301        305 VFRLRGKGLPYLGS-SQKGDLLVEVSVVTPTK--LTKRQE  341 (373)
T ss_pred             EEEEcCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence            99999999998654 36899999999999999  999885

>KOG0712|consensus

Probab=100.00  E-value=3.7e-78  Score=560.35  Aligned_cols=330  Identities=52%  Similarity=0.936  Sum_probs=308.4

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCC
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGA   80 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~   80 (349)
                      +.++.||+||+|+++||.+|||||||+||++||||+||.+.++|++|+.||||||||++|++||+||++++.++++++|+
T Consensus         1 ~~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~   80 (337)
T KOG0712|consen    1 VKNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF   80 (337)
T ss_pred             CcccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999776665555


Q ss_pred             CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCC
Q psy4972          81 DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCA  160 (349)
Q Consensus        81 ~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~  160 (349)
                      +.    |++||+.+   ++      ..++..|++|+.+.+.|||+|+|.|.++++.++++.+|+.|.|+|..+++...|+
T Consensus        81 ~~----f~~~F~~g---~~------~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~  147 (337)
T KOG0712|consen   81 GG----FSQFFGFG---GN------GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCT  147 (337)
T ss_pred             cc----HHHhccCC---Cc------CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCC
Confidence            43    88888722   11      1223344999999999999999999999999999999999999999999888999


Q ss_pred             CCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCC
Q psy4972         161 SCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ  240 (349)
Q Consensus       161 ~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~  240 (349)
                      .|+|+|..+.+++++|||+++++.+|..|+|.|.+++..+.|+.|.|++++...+.++|.|++|+++++++.+.|++++.
T Consensus       148 ~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea  227 (337)
T KOG0712|consen  148 TCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEA  227 (337)
T ss_pred             CCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeec
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             CCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCC
Q psy4972         241 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIY  320 (349)
Q Consensus       241 ~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~  320 (349)
                      ++..+||+++.|..++|+.|.|.|+||++..+|+|.+|++|+.+.+.||||+.+.+.++||+|++|+.+++|+|+|||+.
T Consensus       228 ~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~  307 (337)
T KOG0712|consen  228 PGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIF  307 (337)
T ss_pred             CCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccc
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         321 KNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       321 ~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +++  +|||||+|+|+||+   |+++++
T Consensus       308 ~~~--~g~lyi~~~v~fp~---~~~~~~  330 (337)
T KOG0712|consen  308 RNP--KGDLYIKFEVKFPK---LSPSQL  330 (337)
T ss_pred             cCC--CCcEEEEEEEEcCC---CChHHH
Confidence            876  99999999999999   576664

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4e-77  Score=579.66  Aligned_cols=330  Identities=34%  Similarity=0.626  Sum_probs=283.3

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccccccc---CC
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKA---GG   77 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~---~~   77 (349)
                      .|||+||||+++||.+|||+|||+||++||||+|+   .++++|++|++||++|+||++|+.||+||++++..+.   ++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            48999999999999999999999999999999996   3678999999999999999999999999988763221   11


Q ss_pred             CCCCC------------------hhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeee
Q psy4972          78 GGADF------------------SDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTK  139 (349)
Q Consensus        78 ~g~~~------------------~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~  139 (349)
                      +++..                  +.|+|++||++....|++   .....++.++.|+.+.|.|||+|+|+|+++++.+.+
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~---~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r  157 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM---RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSG  157 (391)
T ss_pred             CCcCcccchhhhccccccccccccccchhhhccCccccccc---cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEee
Confidence            11111                  135555565431100111   001123457899999999999999999999999999


Q ss_pred             eEeccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEE
Q psy4972         140 SVICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLE  218 (349)
Q Consensus       140 ~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~  218 (349)
                      .+.|++|+|+|+..+. ..+|+.|+|+|.+...+    |++ +++.+|+.|+|.|+++  .++|+.|+|.+++.+.++++
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~  230 (391)
T PRK14284        158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFF-SMASTCPECGGEGRVI--TDPCSVCRGQGRIKDKRSVH  230 (391)
T ss_pred             eccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceE-EEEEECCCCCCCCccc--CCcCCCCCCcceecceEEEE
Confidence            9999999999998764 78999999999876533    455 5788999999999998  78999999999999999999


Q ss_pred             EEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCC-CcEEEE
Q psy4972         219 VNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD-DRQLLI  296 (349)
Q Consensus       219 v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~-g~~i~v  296 (349)
                      |+||||+++|++|+|+|+|+++++ +.+|||+|+|++++|+.|+|+|+||++++.|||++|++|++++|+||| |+.+.|
T Consensus       231 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v  310 (391)
T PRK14284        231 VHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRL  310 (391)
T ss_pred             EEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEE
Confidence            999999999999999999999874 678999999999999999999999999999999999999999999998 668999


Q ss_pred             EcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         297 THPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       297 ~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +||++  +++|++++|+|+|||..++ ..+|||||+|+|.+|+.  |+++|+
T Consensus       311 ~Ip~g--~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~--l~~~q~  357 (391)
T PRK14284        311 TIPEG--IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQN--LSEEQK  357 (391)
T ss_pred             EECCc--cCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCC--CCHHHH
Confidence            99998  8999999999999997654 36899999999999999  999875

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.6e-77  Score=573.46  Aligned_cols=330  Identities=33%  Similarity=0.616  Sum_probs=288.1

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-   76 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-   76 (349)
                      |+.+|||+||||+++|+.+|||+|||+||++||||+|+   +++++|++|++||+||+||.+|+.||+||++++..++. 
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~   80 (366)
T PRK14294          1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS   80 (366)
T ss_pred             CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC
Confidence            77899999999999999999999999999999999986   36789999999999999999999999999988753211 


Q ss_pred             C-CCC----CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCC
Q psy4972          77 G-GGA----DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGS  151 (349)
Q Consensus        77 ~-~g~----~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~  151 (349)
                      + +++    .++.|+|++|||.+     +..++.......+++|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|.
T Consensus        81 ~~~~~~~~~~~~~d~f~~~fg~g-----~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~  155 (366)
T PRK14294         81 GFSGFDDIFSSFGDIFEDFFGFG-----GGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGC  155 (366)
T ss_pred             CcCccccchhhhhhhHHHhhccC-----CCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccc
Confidence            1 122    23457888888611     1000011123457899999999999999999999999999999999999999


Q ss_pred             CCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcE
Q psy4972         152 KSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK  230 (349)
Q Consensus       152 ~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~  230 (349)
                      .... ...|+.|+|+|.+...  .  |++ +++++|+.|+|+|+++  ..+|+.|+|.+++.+.+.++|.||+|+++|++
T Consensus       156 ~~~~~~~~C~~C~G~G~~~~~--~--G~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  228 (366)
T PRK14294        156 EPGTSPTTCPQCGGSGQVTQS--Q--GFF-SIRTTCPRCRGMGKVI--VSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSR  228 (366)
T ss_pred             cCCCCcccCCCcCCeEEEEEE--e--eeE-EEEeeCCCCCCcCeec--CcCCCCCCCceEeecceeEEEecCCCCcCCcE
Confidence            8764 7899999999987643  2  555 5789999999999998  78999999999999999999999999999999


Q ss_pred             EEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcE
Q psy4972         231 IYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI  309 (349)
Q Consensus       231 i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~  309 (349)
                      |+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|||.+||+|++++|+||||+ +.|+||++  +++|++
T Consensus       229 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~  305 (366)
T PRK14294        229 LRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDI  305 (366)
T ss_pred             EEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCE
Confidence            99999999874 567899999999999999999999999999999999999999999999996 68999998  899999


Q ss_pred             EEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         310 KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       310 ~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      ++|+|+|||..+. ..+|||||+|+|.+|+.  |+++|+
T Consensus       306 iri~G~G~p~~~~-~~~GDL~V~~~v~~P~~--l~~~q~  341 (366)
T PRK14294        306 FRFKGKGIPSLRG-GGRGDQIIEVEVKVPTR--LTKKQE  341 (366)
T ss_pred             EEECCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence            9999999997654 36899999999999999  998874

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9e-77  Score=575.97  Aligned_cols=333  Identities=35%  Similarity=0.624  Sum_probs=281.7

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhc----cccccccccc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDR----YGIQGIKEKA   75 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~----~G~~~~~~~~   75 (349)
                      .+|||+||||+++|+.+|||+|||+||++||||+|+   +++++|++|++||+||+||.+|+.||+    ||++++..+.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~   87 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP   87 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence            469999999999999999999999999999999986   467999999999999999999999999    9988775321


Q ss_pred             C---CCCCC-ChhhHHHhhhcCCC-------CC--CCCCCCC-CCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeE
Q psy4972          76 G---GGGAD-FSDDLISQLFGGRL-------FG--MGGPFGG-HSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSV  141 (349)
Q Consensus        76 ~---~~g~~-~~~d~f~~~fg~~~-------~~--~g~~~~~-~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~  141 (349)
                      +   ++++. +++++|..+++++.       |.  |+.++++ ++..++.++.|+.+.|.|||+|+|+|+++++.+.+.+
T Consensus        88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~  167 (389)
T PRK14295         88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQA  167 (389)
T ss_pred             CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccc
Confidence            1   11221 11233322110000       00  1111110 1122345789999999999999999999999999999


Q ss_pred             eccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEE
Q psy4972         142 ICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVN  220 (349)
Q Consensus       142 ~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~  220 (349)
                      .|++|+|+|...+. ..+|+.|+|+|.+....    |++ +++.+|+.|+|+|+++  .++|..|.|++++.+.+.++|.
T Consensus       168 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~~~~~~~l~V~  240 (389)
T PRK14295        168 PCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGF-SLSEPCPDCKGRGLIA--DDPCLVCKGSGRAKSSRTMQVR  240 (389)
T ss_pred             cCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cce-EEEEecCCCcceeEEe--ccCCCCCCCCceEeeeeEEEEE
Confidence            99999999998874 78999999999876543    334 5778999999999998  7899999999999999999999


Q ss_pred             ecCCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcC
Q psy4972         221 VDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHP  299 (349)
Q Consensus       221 Ip~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip  299 (349)
                      ||+|+++|++|+|+|+|++.+ +..+|||+|+|++++|+.|+|+|+||++++.|||++|++|++++|+||||+++.|+||
T Consensus       241 Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip  320 (389)
T PRK14295        241 IPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLP  320 (389)
T ss_pred             eCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEEC
Confidence            999999999999999999875 4678999999999999999999999999999999999999999999999988999999


Q ss_pred             CCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         300 PGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       300 ~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      ++  +++|++++|+|+|||..+  +.+|||||+|+|.||+.  ||++|+
T Consensus       321 ~g--~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~--Ls~~qk  363 (389)
T PRK14295        321 PG--TPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKD--LSGKAR  363 (389)
T ss_pred             Cc--cCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCC--CCHHHH
Confidence            98  899999999999999643  35899999999999999  999885

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.6e-76  Score=571.41  Aligned_cols=327  Identities=36%  Similarity=0.668  Sum_probs=284.6

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG   77 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~   77 (349)
                      |+.+|||+||||+++||.+|||+|||+||++||||+|+   .++++|++|++||++|+||.+|+.||+||++++..+.++
T Consensus         1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~   80 (371)
T PRK10767          1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGG   80 (371)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCC
Confidence            67789999999999999999999999999999999986   367899999999999999999999999999877532211


Q ss_pred             CC------CCC-hhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCC
Q psy4972          78 GG------ADF-SDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG  150 (349)
Q Consensus        78 ~g------~~~-~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G  150 (349)
                      ++      +.+ +.|+|+.|||++     +  + ....++.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus        81 ~~~~~~~~~~~~f~~~f~~~fgg~-----~--~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G  152 (371)
T PRK10767         81 GGFGGGGGFGDIFGDIFGDIFGGG-----R--G-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSG  152 (371)
T ss_pred             CCCCCccccccchhhhhhhhccCC-----c--c-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcc
Confidence            11      111 234555555421     0  0 1122346789999999999999999999999999999999999999


Q ss_pred             CCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCc
Q psy4972         151 SKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQ  229 (349)
Q Consensus       151 ~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~  229 (349)
                      ...+. ...|+.|+|+|++...+    |++ +++.+|+.|+|+|+++  .++|+.|+|++++.+.+.++|.||+|+++|+
T Consensus       153 ~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  225 (371)
T PRK10767        153 AKPGTSPKTCPTCHGAGQVRMQQ----GFF-TVQQTCPTCHGRGKII--KDPCKKCHGQGRVEKEKTLSVKIPAGVDTGD  225 (371)
T ss_pred             cCCCCCCccCCCCCCeeEEEEee----ceE-EEEEeCCCCCCceeEC--CCCCCCCCCCceEeeeeeEEEecCCCCCCCc
Confidence            88764 67999999999866543    555 5788999999999998  7899999999999999999999999999999


Q ss_pred             EEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCc
Q psy4972         230 KIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPED  308 (349)
Q Consensus       230 ~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~  308 (349)
                      +|+|+|+|++.. ++.+|||+|+|++++|+.|+|+|+||++++.|+|++||+|++++|+|||| .+.|+||++  +++|+
T Consensus       226 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~  302 (371)
T PRK10767        226 RIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEG--TQTGK  302 (371)
T ss_pred             EEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCC--CCCCC
Confidence            999999999864 56789999999999999999999999999999999999999999999999 589999998  89999


Q ss_pred             EEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         309 IKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       309 ~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +++|+|+|||..+. ..+|||||+|+|.||+.  |+++|+
T Consensus       303 ~~~i~g~G~p~~~~-~~~GDL~v~~~v~~P~~--l~~~~~  339 (371)
T PRK10767        303 LFRLRGKGVKSVRS-GARGDLYCQVVVETPVN--LTKRQK  339 (371)
T ss_pred             EEEECCCCcCCCCC-CCCCCEEEEEEEECCCC--CCHHHH
Confidence            99999999997654 36899999999999999  998874

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1e-75  Score=568.16  Aligned_cols=329  Identities=35%  Similarity=0.650  Sum_probs=283.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC----
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG----   76 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~----   76 (349)
                      .+|||++|||+++|+.+|||+|||+||++||||+|+  +++++|++|++||++|+||.+|+.||+||++++..+..    
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~   81 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG   81 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence            479999999999999999999999999999999995  57899999999999999999999999999987653211    


Q ss_pred             CCC-----CCChhhHHHhhhcCCCCC----CCCCCC-CCC---CCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEec
Q psy4972          77 GGG-----ADFSDDLISQLFGGRLFG----MGGPFG-GHS---RGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVIC  143 (349)
Q Consensus        77 ~~g-----~~~~~d~f~~~fg~~~~~----~g~~~~-~~~---~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C  143 (349)
                      .++     +.++.|+|++||+.  |+    |++..+ .++   ...+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|
T Consensus        82 ~~~~~~~~~~~~~d~f~~~f~~--fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C  159 (382)
T PRK14291         82 QEGFSDFGGGNIEDILEDVFDI--FGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPC  159 (382)
T ss_pred             ccccccccCCCHHHHHHHHHHh--ccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccC
Confidence            011     12456788888542  11    121100 011   1224478999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEec
Q psy4972         144 STCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD  222 (349)
Q Consensus       144 ~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip  222 (349)
                      +.|+|+|...+. ...|+.|+|+|.+....    ++ ++++++|+.|+|.|. +  .++|+.|+|.+++.+.++++|+||
T Consensus       160 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~-~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip  231 (382)
T PRK14291        160 EACGGTGYDPGSGEKVCPTCGGSGEIYQRG----GF-FRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIP  231 (382)
T ss_pred             CCCccccCCCCCCCccCCCCCCceEEEEec----ce-EEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeC
Confidence            999999998764 78999999999876541    33 467899999999995 4  688999999999999999999999


Q ss_pred             CCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCC
Q psy4972         223 KGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPG  301 (349)
Q Consensus       223 ~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~  301 (349)
                      ||+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||+.+.|+||++
T Consensus       232 ~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g  311 (382)
T PRK14291        232 PGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG  311 (382)
T ss_pred             CCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc
Confidence            9999999999999999975 678999999999999999999999999999999999999999999999998899999999


Q ss_pred             CCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCC
Q psy4972         302 EVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNN  344 (349)
Q Consensus       302 ~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls  344 (349)
                        +++|++++|+|+|||..+. ..+|||||+|+|.||+...||
T Consensus       312 --~~~G~~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls  351 (382)
T PRK14291        312 --TKEGDKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLS  351 (382)
T ss_pred             --cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcC
Confidence              8999999999999998654 368999999999999732388

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=1.1e-75  Score=564.32  Aligned_cols=330  Identities=35%  Similarity=0.655  Sum_probs=293.7

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--CC--
Q psy4972           5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG--GG--   78 (349)
Q Consensus         5 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--~~--   78 (349)
                      |||++|||+++|+.+|||+|||+||++||||+|+  ++.++|++|++||++|+|+.+|+.||+||++++..+.+  ++  
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~   80 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF   80 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence            7999999999999999999999999999999995  57899999999999999999999999999987653211  11  


Q ss_pred             ------CCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCC
Q psy4972          79 ------GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSK  152 (349)
Q Consensus        79 ------g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~  152 (349)
                            ++.++.|+|++|||++.   +++  ..+...+.+++|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|..
T Consensus        81 ~~~~~~~~~~~~~~f~~~fg~~~---g~~--~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~  155 (354)
T TIGR02349        81 NGFDIGFFGDFGDIFGDFFGGGG---GSG--RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAK  155 (354)
T ss_pred             CCccccCcCchhhhHHHHhccCc---ccC--ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCC
Confidence                  13345688999997531   111  0112335678999999999999999999999999999999999999988


Q ss_pred             CCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEE
Q psy4972         153 SGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKI  231 (349)
Q Consensus       153 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i  231 (349)
                      .+. ...|+.|+|+|.++..++++||++++ +++|+.|.|+|+++  .++|+.|+|++++.+.+.++|+||+|+++|++|
T Consensus       156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  232 (354)
T TIGR02349       156 PGTDPKTCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKII--KEPCSTCKGKGRVKERKTITVKIPAGVDTGQRL  232 (354)
T ss_pred             CCCCCccCCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceec--CCCCCCCCCCcEecccceEEEEECCCCCCCCEE
Confidence            764 78999999999999999999999865 77999999999998  778999999999999999999999999999999


Q ss_pred             EEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEE
Q psy4972         232 YFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIK  310 (349)
Q Consensus       232 ~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~  310 (349)
                      +|+|+|++.. ++.+|||+|+|++++|+.|+|+|+||++.+.|+|++||+|+++.|+|||| .+.|.||++  +++|+++
T Consensus       233 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~  309 (354)
T TIGR02349       233 RVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVF  309 (354)
T ss_pred             EEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEE
Confidence            9999999864 46789999999999999999999999999999999999999999999999 689999988  8999999


Q ss_pred             EEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         311 GIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       311 ~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +|+|+|||..++. .+|||||+|+|.||+.  |+++|+
T Consensus       310 ~i~g~G~p~~~~~-~~GDL~i~~~v~~P~~--l~~~~~  344 (354)
T TIGR02349       310 RLKGKGVPRLRGN-GRGDLLVTVKVETPKN--LSKEQK  344 (354)
T ss_pred             EECCCCcCCCCCC-CCCCEEEEEEEECCCC--CCHHHH
Confidence            9999999976543 6899999999999999  998875

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.8e-76  Score=568.68  Aligned_cols=335  Identities=33%  Similarity=0.604  Sum_probs=288.7

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCC
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGG   78 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~   78 (349)
                      |+++|||++|||+++|+.+|||+|||+||++||||+|+  +++++|++|++||++|+||.+|++||+||++++......+
T Consensus         2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~   81 (378)
T PRK14283          2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQED   81 (378)
T ss_pred             CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccc
Confidence            56799999999999999999999999999999999995  5789999999999999999999999999988764211100


Q ss_pred             CC--CChhhHHHhhhcC--CC---CCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCC
Q psy4972          79 GA--DFSDDLISQLFGG--RL---FGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGS  151 (349)
Q Consensus        79 g~--~~~~d~f~~~fg~--~~---~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~  151 (349)
                      .+  ..+.++|..|+++  ..   |+|++    ++...++++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~f~~~~fgg----~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~  157 (378)
T PRK14283         82 IFNNINFEDIFQGFGFGIGNIFDMFGFGG----GSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRA  157 (378)
T ss_pred             cccccCccccccccccchhhhccccccCC----CCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCcccc
Confidence            00  0112222222210  00   11221    11223457899999999999999999999999999999999999998


Q ss_pred             CCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcE
Q psy4972         152 KSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK  230 (349)
Q Consensus       152 ~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~  230 (349)
                      ..+. ...|+.|+|+|++...+++++|+++ .+.+|+.|.|.|+.+  .++|..|+|++++.+.+.++|.||+|+++|++
T Consensus       158 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~  234 (378)
T PRK14283        158 EPGSEVKTCPTCGGTGQVKQVRNTILGQMM-NVTTCPDCQGEGKIV--EKPCSNCHGKGVVRETKTISVKIPAGVETGSR  234 (378)
T ss_pred             CCCCCCccCCCcCCccEEEEEEeccCceEE-EEEECCCCCccceec--CCCCCCCCCceeeccceeEEEEECCCCCCCcE
Confidence            8764 7889999999999999999999874 567999999999998  78999999999999999999999999999999


Q ss_pred             EEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcE
Q psy4972         231 IYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI  309 (349)
Q Consensus       231 i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~  309 (349)
                      |+|+|+|++.+ ++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|+|| ++.|+||++  +++|++
T Consensus       235 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~~g~~  311 (378)
T PRK14283        235 LRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQSGTT  311 (378)
T ss_pred             EEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CCCCCE
Confidence            99999999875 46789999999999999999999999999999999999999999999999 689999998  799999


Q ss_pred             EEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         310 KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       310 ~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +||+|+|||.... ..+|||||+|+|.||++  ||++|+
T Consensus       312 ~ri~g~G~p~~~~-~~~GdL~v~~~v~~P~~--l~~~q~  347 (378)
T PRK14283        312 FRLKGHGMPSLRW-SGKGNLYVKVKVVVPKK--LSPKQK  347 (378)
T ss_pred             EEECCCCCCCCCC-CCCCCEEEEEEEEeCCC--CCHHHH
Confidence            9999999997653 36899999999999999  999885

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.2e-75  Score=563.05  Aligned_cols=332  Identities=31%  Similarity=0.587  Sum_probs=288.2

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC--
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG--   77 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~--   77 (349)
                      +|||+||||+++|+.+|||+|||+||++||||+|+    ++.++|++|++||++|+||.+|+.||+||+.++.+++++  
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~   82 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN   82 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence            79999999999999999999999999999999986    366999999999999999999999999999876532111  


Q ss_pred             -CC---CCChhhHHHhhhcCCCCC--CCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCC
Q psy4972          78 -GG---ADFSDDLISQLFGGRLFG--MGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGS  151 (349)
Q Consensus        78 -~g---~~~~~d~f~~~fg~~~~~--~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~  151 (349)
                       ++   +.++.|+|+.|||+.+.+  +++. + ......+++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus        83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~-~-~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~  160 (365)
T PRK14290         83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGF-G-NQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGA  160 (365)
T ss_pred             ccccccccchhHHHHHHhcCcccccccccc-c-cccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccC
Confidence             11   235678999999753100  0110 0 01111234789999999999999999999999999999999999998


Q ss_pred             CCCCcccCCCCCccceEEEEEEecCccc-eEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcE
Q psy4972         152 KSGATFTCASCRGCGFKIHHRIIGPNMT-QQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK  230 (349)
Q Consensus       152 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~  230 (349)
                      ......+|+.|+|+|++...++  +|++ ++.+.+|+.|.|.|+++  +++|+.|+|++++.+.+.++|.||||+.+|++
T Consensus       161 ~~~~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  236 (365)
T PRK14290        161 KNGKLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIP--EEKCPRCNGTGTVVVNEDISVKIPKGATDNLR  236 (365)
T ss_pred             CCCCCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEc--cCCCCCCCCceeEEEeeEEEEEECCCCCCCcE
Confidence            8777789999999998766554  4554 45678999999999998  78999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEE
Q psy4972         231 IYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIK  310 (349)
Q Consensus       231 i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~  310 (349)
                      |+|+|+|++ +++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|++++|+|++|. +.|+||++  +++|+++
T Consensus       237 i~~~g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~i  312 (365)
T PRK14290        237 LRVKGKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVL  312 (365)
T ss_pred             EEEccccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEE
Confidence            999999996 6788999999999999999999999999999999999999999999999984 89999988  8999999


Q ss_pred             EEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         311 GIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       311 ~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +|+|+|||..+.. .+|||||+|+|.+|+.  |+++|+
T Consensus       313 ri~g~G~p~~~~~-~~GDL~V~~~V~~P~~--l~~~~~  347 (365)
T PRK14290        313 KIKGAGMPHLNGH-GSGDLLVRINVEVPKR--LTSKQK  347 (365)
T ss_pred             EECCCCCCCCCCC-CCCCEEEEEEEECCCC--CCHHHH
Confidence            9999999976543 5899999999999999  998874

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-75  Score=564.53  Aligned_cols=331  Identities=32%  Similarity=0.615  Sum_probs=286.9

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccc---c-CC
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK---A-GG   77 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~---~-~~   77 (349)
                      +|||+||||+++||.+|||+|||+||++||||+|+  .++++|++|++||++|+|+.+|+.||+||++++..+   + ++
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g   82 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG   82 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence            79999999999999999999999999999999985  477899999999999999999999999999876532   1 11


Q ss_pred             --CCCC-ChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCC
Q psy4972          78 --GGAD-FSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSG  154 (349)
Q Consensus        78 --~g~~-~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~  154 (349)
                        +++. ++.++|++||+. +|  +++........+.++.|+.+.|.+||+|+|+|+++++.+.+.+.|++|+|+|...+
T Consensus        83 ~~~~~~~~~~~~f~~~f~~-~~--gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~  159 (372)
T PRK14300         83 NHGGFHPDINDIFGDFFSD-FM--GGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKG  159 (372)
T ss_pred             CCCccccchhhhHHHHHHh-hc--CCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCC
Confidence              1221 234667777753 12  21100001112347899999999999999999999999999999999999999876


Q ss_pred             C-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEE
Q psy4972         155 A-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYF  233 (349)
Q Consensus       155 ~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~  233 (349)
                      . ..+|+.|+|+|.+...    .|++ +++.+|+.|+|.|+++  .++|+.|+|++++.+.+.++|.||+|+++|++|+|
T Consensus       160 ~~~~~C~~C~G~G~~~~~----~g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l  232 (372)
T PRK14300        160 ETVTTCDACSGVGATRMQ----QGFF-TIEQACHKCQGNGQII--KNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRH  232 (372)
T ss_pred             CCCccCCCccCeEEEEEe----eceE-EEEEeCCCCCccceEe--CCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEE
Confidence            4 7899999999987542    2566 4788999999999998  78999999999999999999999999999999999


Q ss_pred             cCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEE
Q psy4972         234 RGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGI  312 (349)
Q Consensus       234 ~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l  312 (349)
                      +|+|++.. ++.+|||+|+|++++|+.|+|+|+||++++.|+|++|++|+++.|+|+||+.+.|+||++  +++|++++|
T Consensus       233 ~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri  310 (372)
T PRK14300        233 TGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRL  310 (372)
T ss_pred             eccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEE
Confidence            99999874 567899999999999999999999999999999999999999999999998899999999  899999999


Q ss_pred             cCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972         313 VGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  349 (349)
Q Consensus       313 ~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~  349 (349)
                      +|+|||..++ ..+|||||+|+|.||++  ||++|++
T Consensus       311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~--ls~~qk~  344 (372)
T PRK14300        311 RSKGMSKMRS-TIRGDMLTHIHVEVPKN--LSKRQRE  344 (372)
T ss_pred             CCCCCCCCCC-CCCCCEEEEEEEECCCC--CCHHHHH
Confidence            9999997653 36899999999999999  9999863

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.3e-75  Score=560.77  Aligned_cols=337  Identities=34%  Similarity=0.625  Sum_probs=294.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC--C-
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG--G-   77 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~--~-   77 (349)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+  .++++|++|++||++|+||.+|+.||+||++++.++.+  + 
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~   81 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM   81 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence            479999999999999999999999999999999985  47899999999999999999999999999987653211  1 


Q ss_pred             CCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-c
Q psy4972          78 GGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-T  156 (349)
Q Consensus        78 ~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~  156 (349)
                      +++..+.|+|++||++. .++++.....+..++.++.|+.+.|.|||+|+|.|+++++.+.+.+.|++|+|+|...+. .
T Consensus        82 ~~~~~~~d~f~~~fg~~-~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~  160 (374)
T PRK14293         82 GDMGGFADIFETFFSGF-GGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGP  160 (374)
T ss_pred             ccccchHHHHHHHhccc-CCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCC
Confidence            12233468899998641 011110000111234578899999999999999999999999999999999999998764 7


Q ss_pred             ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCC
Q psy4972         157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGE  236 (349)
Q Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~  236 (349)
                      ..|+.|+|+|++...+++++|++++ +.+|+.|.|.|+++  +++|+.|.|.+++.+.+.++|+||||+++|++|+|+|+
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~  237 (374)
T PRK14293        161 TTCSTCGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVI--EDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGE  237 (374)
T ss_pred             eeCCCCCCcceEEEEEecCcceEEE-EeeCCCCCcceeEe--ccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccC
Confidence            7899999999999999999998854 68999999999998  78999999999999999999999999999999999999


Q ss_pred             CCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCC
Q psy4972         237 GDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGE  315 (349)
Q Consensus       237 G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~  315 (349)
                      |++.. +..+|||+|+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|+||+ +.|+||++  +++|++++|+|+
T Consensus       238 G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~  314 (374)
T PRK14293        238 GDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENK  314 (374)
T ss_pred             ccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCC
Confidence            99864 467899999999999999999999999999999999999999999999996 78899988  899999999999


Q ss_pred             CcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         316 GMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       316 G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      |||..++.+.+|||||+|+|.||+.  |+++|+
T Consensus       315 G~p~~~~~~~~GDL~v~~~v~~P~~--l~~~~~  345 (374)
T PRK14293        315 GVPRLGNPVARGDHLITVKVKIPTR--ISDEER  345 (374)
T ss_pred             CCCCCCCCCCcCCEEEEEEEECCCC--CCHHHH
Confidence            9998765446899999999999999  998875

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-74  Score=561.06  Aligned_cols=340  Identities=34%  Similarity=0.636  Sum_probs=292.6

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG   77 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~   77 (349)
                      |+.+|||++|||+++|+.+|||+|||+||++||||+|+   ++.++|++|++||++|+||.+|+.||+||+++++.+.+.
T Consensus         2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~   81 (386)
T PRK14289          2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG   81 (386)
T ss_pred             CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence            45689999999999999999999999999999999986   467999999999999999999999999999876532111


Q ss_pred             CCC----CChhhHHHhh---hcCCCCCCCCC--CC-CCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCC
Q psy4972          78 GGA----DFSDDLISQL---FGGRLFGMGGP--FG-GHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCN  147 (349)
Q Consensus        78 ~g~----~~~~d~f~~~---fg~~~~~~g~~--~~-~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~  147 (349)
                      +++    .++.++|+.|   |++.+.+++++  ++ +.....+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+
T Consensus        82 ~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~  161 (386)
T PRK14289         82 GGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH  161 (386)
T ss_pred             CCCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence            111    1234555443   54311011110  00 01112245789999999999999999999999999999999999


Q ss_pred             CCCCCCC-CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCc
Q psy4972         148 GKGSKSG-ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMK  226 (349)
Q Consensus       148 G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~  226 (349)
                      |+|.... ....|+.|+|+|.+...+++++|+++ .+.+|+.|+|.|+++  ..+|..|.|++++.+.+.++|+||+|++
T Consensus       162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~  238 (386)
T PRK14289        162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQ-TQSTCPTCNGEGKII--KKKCKKCGGEGIVYGEEVITVKIPAGVA  238 (386)
T ss_pred             CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEE-EEEecCCCCcccccc--CcCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence            9998875 47899999999999999999999985 589999999999998  7899999999999999999999999999


Q ss_pred             cCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcC
Q psy4972         227 EMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIK  305 (349)
Q Consensus       227 ~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~  305 (349)
                      +|++|+|+|+|++.. ++.+|||+|+|++++|+.|+|+++||++++.|+|.+|++|+++.|+|++|+ +.|+||++  ++
T Consensus       239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~  315 (386)
T PRK14289        239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--TQ  315 (386)
T ss_pred             CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--cC
Confidence            999999999999874 567899999999999999999999999999999999999999999999996 89999998  79


Q ss_pred             CCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972         306 PEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  349 (349)
Q Consensus       306 ~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~  349 (349)
                      +|+++||+|+|||..++ ..+|||||+|+|.||++  ||++|++
T Consensus       316 ~g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~--l~~~q~~  356 (386)
T PRK14289        316 PGKVLRLRNKGLPSVNG-YGTGDLLVNVSVYIPET--LSKEEKQ  356 (386)
T ss_pred             CCcEEEECCCCcCCCCC-CCCCcEEEEEEEEeCCC--CCHHHHH
Confidence            99999999999997654 36899999999999999  9998863

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-73  Score=552.90  Aligned_cols=331  Identities=34%  Similarity=0.625  Sum_probs=291.4

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC---
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG---   77 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~---   77 (349)
                      +.|||++|||+++|+.+|||+|||+||++||||+|+  +++++|++|++||++|+||.+|+.||+||+++..+..++   
T Consensus         1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~   80 (371)
T PRK14292          1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPF   80 (371)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCccc
Confidence            369999999999999999999999999999999996  478999999999999999999999999998764221111   


Q ss_pred             CCC-CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-
Q psy4972          78 GGA-DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-  155 (349)
Q Consensus        78 ~g~-~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-  155 (349)
                      +++ .+++|+|+.|||++.+  ++.   ....++.++.|+.+.+.+||+|+|+|+++++.+.+.+.|++|+|+|..... 
T Consensus        81 ~~~~~d~~d~f~~~fg~~~~--~~~---~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~  155 (371)
T PRK14292         81 GGMGFDPMDIFEQLFGGAGF--GGG---RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGK  155 (371)
T ss_pred             CccCCChHHHHHHhhCCCCc--CCC---CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCC
Confidence            111 1346899999975321  110   011234578999999999999999999999999999999999999987753 


Q ss_pred             -cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEc
Q psy4972         156 -TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR  234 (349)
Q Consensus       156 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~  234 (349)
                       ..+|+.|+|+|++...+++.+|+++ .+.+|+.|+|.|+.+  ..+|..|.|++++...+.++|.||+|+++|++|+|+
T Consensus       156 ~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~  232 (371)
T PRK14292        156 PPKTCPTCRGAGAVRAQARTIFGVVE-TQQPCPTCRGEGQII--TDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA  232 (371)
T ss_pred             CCccCCCCCCccEEEEEEeccCceEE-EeeecCCCcccceec--CCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence             6889999999999888888888884 578999999999998  789999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcC
Q psy4972         235 GEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVG  314 (349)
Q Consensus       235 g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g  314 (349)
                      |+|++.+++. |||+|+|++++|+.|+|+|+||++.+.|+|.+|++|+++.|+||||+. .|+||++  ++++++++|+|
T Consensus       233 G~G~~~~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g  308 (371)
T PRK14292        233 GMGNEGPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRG  308 (371)
T ss_pred             cCcCCCCCCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECC
Confidence            9999987665 999999999999999999999999999999999999999999999974 7999998  89999999999


Q ss_pred             CCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         315 EGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       315 ~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +|||..++. .+|||||+|+|.||+.  ||++|+
T Consensus       309 ~G~p~~~~~-~~GDL~V~~~v~~P~~--l~~~q~  339 (371)
T PRK14292        309 QGMPRLQGA-GTGDLIVEYEIAVPKQ--LSPEAR  339 (371)
T ss_pred             CCCCCCCCC-CCCCEEEEEEEECCCC--CCHHHH
Confidence            999976543 5799999999999999  999885

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-58  Score=432.45  Aligned_cols=260  Identities=36%  Similarity=0.591  Sum_probs=218.8

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccc---c
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK---A   75 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~---~   75 (349)
                      |..+|||+||||+++||.+|||+|||+||++||||+|+  .++++|++|++||++|+||.+|+.||+||++++..+   .
T Consensus         1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~   80 (291)
T PRK14299          1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGP   80 (291)
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCC
Confidence            66789999999999999999999999999999999985  578999999999999999999999999998754321   0


Q ss_pred             -----CCCC-----CCChhhHHHhhhcCC-CC-CCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEec
Q psy4972          76 -----GGGG-----ADFSDDLISQLFGGR-LF-GMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVIC  143 (349)
Q Consensus        76 -----~~~g-----~~~~~d~f~~~fg~~-~~-~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C  143 (349)
                           +.++     +.+++|+|++|||+. .+ +++..... ....++++.|+.+.+.|||+|+|.|+++++.+.     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~-~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-----  154 (291)
T PRK14299         81 PPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGS-VGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-----  154 (291)
T ss_pred             CCCCCCCCCccccCcCCHHHHHHHHhCCCCCCCCccccccc-ccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-----
Confidence                 0011     134568899999742 11 11110000 012245789999999999999999999887542     


Q ss_pred             cCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecC
Q psy4972         144 STCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDK  223 (349)
Q Consensus       144 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~  223 (349)
                                                                                            .+.++|+||+
T Consensus       155 ----------------------------------------------------------------------g~~~~V~Ip~  164 (291)
T PRK14299        155 ----------------------------------------------------------------------GERLSVRIPP  164 (291)
T ss_pred             ----------------------------------------------------------------------CEEEEEecCC
Confidence                                                                                  1368899999


Q ss_pred             CCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCC
Q psy4972         224 GMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEV  303 (349)
Q Consensus       224 G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v  303 (349)
                      |+++|++|+|+|+|++.     |||+|+|++++|+.|+|+|+||+++++||+.+|++|++++|+|+||. +.|+||++  
T Consensus       165 G~~~G~~ir~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--  236 (291)
T PRK14299        165 GVREGQVIRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--  236 (291)
T ss_pred             CcCCCcEEEECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--
Confidence            99999999999999874     99999999999999999999999999999999999999999999996 88999988  


Q ss_pred             cCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         304 IKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       304 ~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +++|+++||+|+|||..  .+.+|||||+|+|.||+.  |+++|+
T Consensus       237 ~~~g~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~--l~~~~~  277 (291)
T PRK14299        237 TQAGRKLRLKGKGWPRG--PAGRGDQYAEVRITIPTR--PTPEEE  277 (291)
T ss_pred             cCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCC--CCHHHH
Confidence            89999999999999963  246899999999999999  998874

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=1.6e-56  Score=422.49  Aligned_cols=272  Identities=28%  Similarity=0.488  Sum_probs=225.7

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhccccc----ccccc
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQ----GIKEK   74 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~----~~~~~   74 (349)
                      |+.+|||++|||+++|+.+|||+|||+||++||||+|+  .++++|++|++||++|+||.+|+.||+||..    ++.+.
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~   80 (306)
T PRK10266          1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQ   80 (306)
T ss_pred             CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccc
Confidence            67789999999999999999999999999999999985  5789999999999999999999999999854    22211


Q ss_pred             --cCCC---CCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCC
Q psy4972          75 --AGGG---GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGK  149 (349)
Q Consensus        75 --~~~~---g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~  149 (349)
                        .+++   ++.++.++|+.|||++    ++.   .+....+++.|+.+.+.|||+|++.|+.+++.+.+.+    |   
T Consensus        81 ~~~~~~~~~~~~~~~~~f~~~~g~~----~~~---~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~---  146 (306)
T PRK10266         81 FQHGDGQSFNAEDFDDIFSSIFGQH----ARQ---SRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y---  146 (306)
T ss_pred             cccCCCCCCCCCCHHHHHHHHhCCC----CCC---CCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c---
Confidence              0111   1234568888888742    110   1112345689999999999999999999999887642    1   


Q ss_pred             CCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCc
Q psy4972         150 GSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQ  229 (349)
Q Consensus       150 G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~  229 (349)
                                   .|.|..                           .              ....+.++|+||+|+++|+
T Consensus       147 -------------~g~G~~---------------------------~--------------~~~~~~~~V~Ip~G~~~G~  172 (306)
T PRK10266        147 -------------NAFGMI---------------------------E--------------QEIPKTLNVKIPAGVGNGQ  172 (306)
T ss_pred             -------------cCCCeE---------------------------E--------------EeeeEEEEEEECCCCcCCc
Confidence                         122210                           0              0123579999999999999


Q ss_pred             EEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCc
Q psy4972         230 KIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPED  308 (349)
Q Consensus       230 ~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~  308 (349)
                      +|+|+|+|++..+ ..+|||+|+|++++|+.|+|+|+||++++.||+++|++|++++|+|++|+ +.|+||++  +++|+
T Consensus       173 ~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~  249 (306)
T PRK10266        173 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQ  249 (306)
T ss_pred             EEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCC
Confidence            9999999998754 57899999999999999999999999999999999999999999999996 89999998  79999


Q ss_pred             EEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         309 IKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       309 ~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +++|+|+|||..+   .+|||||+|+|.+|++  ||++|+
T Consensus       250 ~~ri~g~G~p~~~---~~GdL~v~~~v~~P~~--l~~~q~  284 (306)
T PRK10266        250 RLRVKGKGLVSKK---QTGDLYAVLKIVMPPK--PDEKTA  284 (306)
T ss_pred             EEEECCCCCCCCC---CCCCEEEEEEEECCCC--CCHHHH
Confidence            9999999999643   5899999999999999  999885

>KOG0713|consensus

Probab=100.00  E-value=4.7e-45  Score=334.99  Aligned_cols=306  Identities=40%  Similarity=0.648  Sum_probs=245.9

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccccccc--C
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKA--G   76 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~--~   76 (349)
                      +.+|||++|||+++|+..|||+||||||++||||+||   .|.+.|++|+.||||||||++|+.||+||++++...+  +
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~   93 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDG   93 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccccc
Confidence            4699999999999999999999999999999999996   4789999999999999999999999999999997543  1


Q ss_pred             CCCCCChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCc
Q psy4972          77 GGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT  156 (349)
Q Consensus        77 ~~g~~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~  156 (349)
                      .++.+. .++|+.||+.-++.+++.   ......+++.++...++.++++.|.+...+....+.+.|+. .|+  .    
T Consensus        94 ~~g~~~-~~~f~~~f~dfg~~~~g~---~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~--~----  162 (336)
T KOG0713|consen   94 EGGGGG-NDIFSAFFGDFGVTVGGN---PLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGT--R----  162 (336)
T ss_pred             ccCCcc-cchHHHhhcccccccCCC---cccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Ccc--c----
Confidence            112111 478888887422222221   22334678999999999999999999998888877776652 111  1    


Q ss_pred             ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCC
Q psy4972         157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGE  236 (349)
Q Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~  236 (349)
                          .|+-. ..+..++.++|.++.++               ...|.+|.+.+.......+++.+..|...+....+..+
T Consensus       163 ----~~~~~-~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~  222 (336)
T KOG0713|consen  163 ----KCNCR-LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELE  222 (336)
T ss_pred             ----ccCCh-hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeecc
Confidence                11111 11223344444443332               34577777777788889999999999999999999999


Q ss_pred             CCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCC
Q psy4972         237 GDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEG  316 (349)
Q Consensus       237 G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G  316 (349)
                      |.+...+.+||+.+.+...+|+.|.|+++++++.+.+++.+++.|...++.++|+..+.+.-..  +..|+..++..++|
T Consensus       223 ~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~--~~~p~~~~~~~~~~  300 (336)
T KOG0713|consen  223 GEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKK--ITWPGARTRKKGEG  300 (336)
T ss_pred             CCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhh--ccccchhhhhhhcc
Confidence            9998889999999999999999999999999999999999999999999999999766554333  36789999999999


Q ss_pred             cCCCCCCCCCCcEEEEEEEEcCCC
Q psy4972         317 MPIYKNPYEKGTLYIKFDVQFPES  340 (349)
Q Consensus       317 ~p~~~~~~~~Gdl~v~~~v~~P~~  340 (349)
                      ||..+.....|++|++|.+.+|.+
T Consensus       301 ~~~l~~~~~~~~~~~t~~~~~~~~  324 (336)
T KOG0713|consen  301 MPLLKNRNEKGNLYVTFDVEFPKS  324 (336)
T ss_pred             chhhhccchhcceeEEecccCccc
Confidence            998887778899999999999965

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=1.5e-41  Score=338.72  Aligned_cols=124  Identities=20%  Similarity=0.213  Sum_probs=113.1

Q ss_pred             EEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCC
Q psy4972         211 LSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLD  290 (349)
Q Consensus       211 ~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~  290 (349)
                      +.+.+.++|+||+|+++|++|+|+|+|++++++. |||+|+|++++|+.|+|+|+||++.+.|+|.+||+|+++.|+|||
T Consensus       693 vkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLD  771 (871)
T TIGR03835       693 TNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPN  771 (871)
T ss_pred             eeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCC
Confidence            3456799999999999999999999999876664 999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEE-cCCC
Q psy4972         291 DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ-FPES  340 (349)
Q Consensus       291 g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~-~P~~  340 (349)
                      |+ +.|+||++  +++|+++||+|+|||..+  +.||||||+|+|. ++++
T Consensus       772 Gr-VkLkIPpg--TqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~  817 (871)
T TIGR03835       772 KL-FNVRIPGG--IKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK  817 (871)
T ss_pred             CC-EEEeeCCC--CCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence            97 88999988  899999999999999543  4689999999997 5655

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0715|consensus

Probab=100.00  E-value=1.8e-40  Score=308.60  Aligned_cols=244  Identities=33%  Similarity=0.606  Sum_probs=208.6

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCC
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGA   80 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~   80 (349)
                      ..|||+||||+++|+..|||+||++||++||||.|.  ++.++|++|.+|||+|+|+++|+.||++|..+..     +..
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~-----~~~  116 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG-----EFG  116 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc-----ccc
Confidence            348999999999999999999999999999999985  6889999999999999999999999999886511     111


Q ss_pred             CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-cccC
Q psy4972          81 DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-TFTC  159 (349)
Q Consensus        81 ~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C  159 (349)
                      +++.++|..+|++.            ......+.+..+++.++|+++..|+.+.+.+.....|.+|.|.|...+. ...|
T Consensus       117 g~~~~~~~~~~~~~------------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~  184 (288)
T KOG0715|consen  117 GNPFDVFLEFFGGK------------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESC  184 (288)
T ss_pred             CCccchHHHhhccc------------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccc
Confidence            25668888887641            1112234577788999999999999999999999999999999977774 7899


Q ss_pred             CCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCC
Q psy4972         160 ASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ  239 (349)
Q Consensus       160 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~  239 (349)
                      +.|.|+|.........+.    .. +|+.|.|.|.+.  .+.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+.+..
T Consensus       185 ~~~~~~~~~~~~~~~~f~----~~-~~~~c~~~~~~~--~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~  257 (288)
T KOG0715|consen  185 KTCSGRGLVSNPKEDPFI----LY-TCSYCLGRGLVL--RDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND  257 (288)
T ss_pred             hhhhCcccccccccCCcc----ee-ecccccccceec--cchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc
Confidence            999999965543333321    12 899999999998  56699999999999999999999999999999999998865


Q ss_pred             CCCCCCccEEEEEEEccCCccccccceeEEEeecCHHH
Q psy4972         240 QPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTE  277 (349)
Q Consensus       240 ~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~  277 (349)
                             ||.|.+.|.+++.|+|+|.|++++..|++.+
T Consensus       258 -------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  258 -------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             -------eEEEEEEeccCcccccccCcccccccccccC
Confidence                   8999999999999999999999999998753

>KOG0714|consensus

Probab=99.91  E-value=3.7e-23  Score=193.66  Aligned_cols=254  Identities=41%  Similarity=0.662  Sum_probs=191.6

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhcccccccccccC-C
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG-G   77 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~-~   77 (349)
                      ..|||++|+|.++|+.++|++||+++|++||||+|+.    +.++|++|.+||++|+|+.+|..||+||+++..+... .
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~   81 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS   81 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence            4799999999999999999999999999999999864    3457999999999999999999999999866654211 1


Q ss_pred             ----C-----CCCChhhHHHhhhcCC-CCC-C-------------------CCCCCC--C----------CCCCCCCCCC
Q psy4972          78 ----G-----GADFSDDLISQLFGGR-LFG-M-------------------GGPFGG--H----------SRGRPHRGED  115 (349)
Q Consensus        78 ----~-----g~~~~~d~f~~~fg~~-~~~-~-------------------g~~~~~--~----------~~~~~~~~~d  115 (349)
                          .     .+..+.+.|.+|||.. .+. +                   +.....  .          ......+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (306)
T KOG0714|consen   82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP  161 (306)
T ss_pred             CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence                1     1234467888888831 111 0                   000000  0          0011122233


Q ss_pred             eeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceE
Q psy4972         116 TVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEV  195 (349)
Q Consensus       116 ~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~  195 (349)
                      +.+.+.+++++.+.++.+...+.+...=.                                         ..        
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~--------  192 (306)
T KOG0714|consen  162 VEHPLRVSLEDLYKGESKKMKISRQSFTS-----------------------------------------NG--------  192 (306)
T ss_pred             ccCCcceeHHHhccccceeeecccccccC-----------------------------------------Cc--------
Confidence            45555568888888888877776543100                                         00        


Q ss_pred             EcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEE--eec
Q psy4972         196 MNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTT--ETI  273 (349)
Q Consensus       196 ~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~--l~I  273 (349)
                                  .........+.+.+.+++..|+.+....+|+..++..|-++++.+..++|..|.+.+.+|...  ..|
T Consensus       193 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~  260 (306)
T KOG0714|consen  193 ------------REGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI  260 (306)
T ss_pred             ------------ccccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceeccccee
Confidence                        001224567899999999999999999999988777889999999999999999999999999  999


Q ss_pred             CHHHHhCCcEEEEecCCCcEEEEEcCCC-CCcCCCcEEEEcCCCcCC
Q psy4972         274 TLTEALCGFTKVIKHLDDRQLLITHPPG-EVIKPEDIKGIVGEGMPI  319 (349)
Q Consensus       274 ~l~~al~G~~~~i~~l~g~~i~v~ip~~-~v~~~g~~~~l~g~G~p~  319 (349)
                      ++.+|++|....++++++..+.+.  .. .++.++...+++++|||.
T Consensus       261 s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  305 (306)
T KOG0714|consen  261 SLKEALLGVTVFVPTLDGRSYSLS--INKDLIEPGEEDVIPGEGLPC  305 (306)
T ss_pred             ehhhhhcCcceeeecccCccccCc--ccccccCCCceeeecCCCCCC
Confidence            999999999999999999765543  44 568999999999999985

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.84  E-value=2.9e-21  Score=146.97  Aligned_cols=80  Identities=38%  Similarity=0.567  Sum_probs=69.3

Q ss_pred             eeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCc
Q psy4972         266 NLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNND  345 (349)
Q Consensus       266 dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~  345 (349)
                      ||+++++|++++|++|++++|+|+||+++.|++|++  +++|++++|+|+|||...+++.+|||||+|+|.||++  ||+
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~--ls~   76 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKK--LSP   76 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SS--TSH
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCC--CCH
Confidence            799999999999999999999999999999999998  8999999999999999887768999999999999999  999


Q ss_pred             cccC
Q psy4972         346 AKLK  349 (349)
Q Consensus       346 ~q~~  349 (349)
                      +|+|
T Consensus        77 ~qk~   80 (81)
T PF01556_consen   77 EQKE   80 (81)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8864

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.77  E-value=3.7e-19  Score=182.58  Aligned_cols=72  Identities=42%  Similarity=0.711  Sum_probs=67.1

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE   73 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   73 (349)
                      .+++||++|||+++|+..+||+|||+||++||||+|+  .+.++|++|++||+|||||.+|+.||+||..++..
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            4689999999999999999999999999999999997  46789999999999999999999999999987653

>KOG0716|consensus

Probab=99.77  E-value=2.3e-19  Score=160.57  Aligned_cols=70  Identities=61%  Similarity=0.963  Sum_probs=65.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK   72 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   72 (349)
                      ..|+|+||||+++|+.++||||||+|+++||||+++   ++.++|++||+||++|+||.+|..||.||+.++.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~  102 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK  102 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence            357999999999999999999999999999999985   4789999999999999999999999999987753

>KOG0718|consensus

Probab=99.76  E-value=5.7e-19  Score=167.84  Aligned_cols=74  Identities=54%  Similarity=0.889  Sum_probs=68.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHhccchhhhhhhhcccccccccccC
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAG   76 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~   76 (349)
                      +.|||.+|+|+++||.+||++|||++++-||||++-      .|++.|+.|.+||||||||.+|++||.||++|++-.+.
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gw   87 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGW   87 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccCc
Confidence            569999999999999999999999999999999973      36889999999999999999999999999999984333

>KOG0691|consensus

Probab=99.76  E-value=8.1e-19  Score=162.33  Aligned_cols=89  Identities=52%  Similarity=0.829  Sum_probs=77.3

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCC
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGG   79 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g   79 (349)
                      +.|||++|||+.+|+..||++|||+.|++||||+||   .|.++|+.+.+||+||+|+.+|+.||.+|..+....    +
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----~   79 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----G   79 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch----h
Confidence            689999999999999999999999999999999996   478999999999999999999999999998765332    3


Q ss_pred             CCChhhHHHhhhcCCC
Q psy4972          80 ADFSDDLISQLFGGRL   95 (349)
Q Consensus        80 ~~~~~d~f~~~fg~~~   95 (349)
                      +.+..++|.+.|++..
T Consensus        80 ~~d~~~~~r~~f~~dl   95 (296)
T KOG0691|consen   80 REDQADGFRKKFGSDL   95 (296)
T ss_pred             hhhHHHHHHHHhhhhh
Confidence            4456688888887543

>KOG0717|consensus

Probab=99.74  E-value=1.3e-18  Score=165.29  Aligned_cols=71  Identities=55%  Similarity=0.798  Sum_probs=65.0

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK   72 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   72 (349)
                      .++.||++|||.++|+..+||++||+|||+||||+||    ++.++|+.|+.||+|||||..|++||..-++-+.
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~   80 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR   80 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence            4688999999999999999999999999999999997    4789999999999999999999999987664443

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=8.3e-17  Score=144.17  Aligned_cols=191  Identities=30%  Similarity=0.384  Sum_probs=125.1

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccc-ccccccccC
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYG-IQGIKEKAG   76 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G-~~~~~~~~~   76 (349)
                      ...+||+||||+++|+..||++|||++|++||||+++.    +.++|+.|++||++|+|+.+|+.||.++ .........
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~~~~~~~~~~~   83 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIGADNYFPGKSY   83 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhcccccCccccc
Confidence            35799999999999999999999999999999999974    5699999999999999999999999973 322211110


Q ss_pred             --CC---CC--CChhhHHHhhhcCCC-----CC----CCCCCCC-----------CCCCCCCCCC-CeeeeEEeChhhhh
Q psy4972          77 --GG---GA--DFSDDLISQLFGGRL-----FG----MGGPFGG-----------HSRGRPHRGE-DTVHPLKVSLEDLY  128 (349)
Q Consensus        77 --~~---g~--~~~~d~f~~~fg~~~-----~~----~g~~~~~-----------~~~~~~~~~~-d~~~~l~vsl~e~~  128 (349)
                        ..   ..  ....+++...++...     ..    +......           .......... +....+.+++.+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (237)
T COG2214          84 RESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSRGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEAL  163 (237)
T ss_pred             cccccccccccccHHHHHHhhcccccccccccchhhhcccccccccccccccccccccccccccccceeeeeeccHHHHh
Confidence              00   01  123344444433210     00    0000000           0000000000 23333444444444


Q ss_pred             cCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCc
Q psy4972         129 NGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGR  208 (349)
Q Consensus       129 ~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~  208 (349)
                      .+....+.+.                                                                      
T Consensus       164 ~~~~~~~~~~----------------------------------------------------------------------  173 (237)
T COG2214         164 AGVKKAVARL----------------------------------------------------------------------  173 (237)
T ss_pred             cCcceeeecc----------------------------------------------------------------------
Confidence            4433332221                                                                      


Q ss_pred             cEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCcccccccee
Q psy4972         209 KTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINL  267 (349)
Q Consensus       209 g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL  267 (349)
                          ......+.+|.++..+..+++.+.+.... +..++.+..+..++|+.|..++.++
T Consensus       174 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  227 (237)
T COG2214         174 ----LGKALKSTIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKRHPPFALEGDDK  227 (237)
T ss_pred             ----ccccccccCCcccccCceeeecccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence                11122378999999999999999998877 7789999999999999999999998

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.72  E-value=7.7e-18  Score=122.23  Aligned_cols=60  Identities=57%  Similarity=0.951  Sum_probs=56.9

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhh
Q psy4972           5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYD   64 (349)
Q Consensus         5 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD   64 (349)
                      |||+||||+++++.++|++||+++++++|||+++.    +.+.|+.|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            68999999999999999999999999999999864    4599999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0719|consensus

Probab=99.70  E-value=1.4e-17  Score=145.61  Aligned_cols=67  Identities=57%  Similarity=0.902  Sum_probs=62.7

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc-----chHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP-----EAGDKFKEISFAYEVLSDEKKRATYDRYGIQ   69 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~-----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~   69 (349)
                      .+|+|+||||.++|+..+|++||++||++||||+++     ++.++|+.++.||+||+|.++|+.||..|.-
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            469999999999999999999999999999999996     3678999999999999999999999998864

>PHA03102 Small T antigen; Reviewed

Probab=99.70  E-value=2.5e-17  Score=138.53  Aligned_cols=85  Identities=28%  Similarity=0.438  Sum_probs=72.6

Q ss_pred             cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCCC
Q psy4972           4 TKLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGAD   81 (349)
Q Consensus         4 ~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~~   81 (349)
                      +.+|++|||+++|  |.++||+|||++|+++|||+++ +.++|++|++||++|+|+.+|..||.+|........     .
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg-~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~-----~   78 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG-DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE-----D   78 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc-hhHHHHHHHHHHHHHhhHHHhccccccCCccccccc-----c
Confidence            5789999999999  9999999999999999999975 468999999999999999999999999976543221     2


Q ss_pred             ChhhHHHhhhcCC
Q psy4972          82 FSDDLISQLFGGR   94 (349)
Q Consensus        82 ~~~d~f~~~fg~~   94 (349)
                      .+.++|.++||+.
T Consensus        79 ~~~~~f~~~fg~~   91 (153)
T PHA03102         79 VPSGYVGATFGDR   91 (153)
T ss_pred             cHHHHhhhhcCCc
Confidence            2667788888654

>KOG0624|consensus

Probab=99.69  E-value=2.8e-17  Score=151.82  Aligned_cols=70  Identities=47%  Similarity=0.743  Sum_probs=62.7

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK   72 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   72 (349)
                      ..+|||+||||.++|+..||.||||+||.+||||...      .|+++|-.|..|-|||+||++|+.||. |++.+.
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD  467 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD  467 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence            3689999999999999999999999999999999864      367889999999999999999999998 455443

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.62  E-value=8e-16  Score=109.99  Aligned_cols=55  Identities=67%  Similarity=0.984  Sum_probs=51.8

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchh
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEK   58 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~   58 (349)
                      ++||++|||+++++.++|++||+++++++|||+++.    +.+.|+.|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999873    6789999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.59  E-value=1.9e-15  Score=106.00  Aligned_cols=52  Identities=69%  Similarity=1.076  Sum_probs=49.6

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHHHHhccc
Q psy4972           5 KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---AGDKFKEISFAYEVLSD   56 (349)
Q Consensus         5 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~d   56 (349)
                      |||++|||+++++.++|+++|++|+++||||+++.   +.+.|+.|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999975   78999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721|consensus

Probab=99.59  E-value=1.5e-15  Score=131.91  Aligned_cols=68  Identities=43%  Similarity=0.800  Sum_probs=63.0

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQ   69 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~   69 (349)
                      ..-|+|+||||++.|+.+|||||||+|++++|||++|   +.++.|.+|++||+.|+|+..|..|..||+.
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P  167 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP  167 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence            3468999999999999999999999999999999984   4678899999999999999999999999874

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.52  E-value=4.1e-14  Score=103.13  Aligned_cols=65  Identities=38%  Similarity=0.891  Sum_probs=52.5

Q ss_pred             ccCCCCCCCCCC-CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCcc
Q psy4972         143 CSTCNGKGSKSG-ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRK  209 (349)
Q Consensus       143 C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g  209 (349)
                      |+.|+|+|+.++ ...+|+.|+|+|++...++ .++++++++++|+.|+|+|+++ ..++|+.|+|+|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence            899999999665 5889999999999998888 6677779999999999999999 899999999975

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=8.7e-14  Score=132.10  Aligned_cols=119  Identities=23%  Similarity=0.487  Sum_probs=86.3

Q ss_pred             eeEeccCCCCCCCCC-----C---CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcC-----CCCCCcC
Q psy4972         139 KSVICSTCNGKGSKS-----G---ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNE-----KDRCGSC  205 (349)
Q Consensus       139 ~~~~C~~C~G~G~~~-----~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~-----~~~C~~C  205 (349)
                      ..++|++|+|+|...     +   ..++|+.|+|+|.             .+..+|+.|+|.|++...     ..+--..
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~-------------~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~  224 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGK-------------IIKDPCGKCKGKGRVKKKKSISVNIPAGVD  224 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCcccee-------------ECCCCCCCCCCCCeEeeeeEEEEECCCCCc
Confidence            567899999999642     2   2578999999998             457899999999996411     1111111


Q ss_pred             CCccEEEeeE--------------------------------------------------------EEEEEecCCCccCc
Q psy4972         206 AGRKTLSVKK--------------------------------------------------------VLEVNVDKGMKEMQ  229 (349)
Q Consensus       206 ~g~g~~~~~~--------------------------------------------------------~~~v~Ip~G~~~G~  229 (349)
                      .|......-.                                                        .++|+||||+++|+
T Consensus       225 ~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~  304 (371)
T COG0484         225 DGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGE  304 (371)
T ss_pred             cCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCc
Confidence            1111100000                                                        67999999999999


Q ss_pred             EEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEE
Q psy4972         230 KIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTT  270 (349)
Q Consensus       230 ~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~  270 (349)
                      +++|+|+|.+.. +...|||||.|+|.-+..+......|+.+
T Consensus       305 ~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~  346 (371)
T COG0484         305 VFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE  346 (371)
T ss_pred             EEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence            999999999974 45579999999999999887766655443

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.45  E-value=1.3e-13  Score=118.56  Aligned_cols=64  Identities=27%  Similarity=0.408  Sum_probs=56.6

Q ss_pred             ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcchH------HHHHHHHHHHHhccchhhhhhhhcc
Q psy4972           3 DTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPEAG------DKFKEISFAYEVLSDEKKRATYDRY   66 (349)
Q Consensus         3 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~~~------~~f~~i~~Ay~~L~d~~~r~~YD~~   66 (349)
                      +.|||++|||++.  ++..+|+++||+|++++|||++....      +.+..|++||++|+||.+|+.|+.-
T Consensus         1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356          1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3699999999997  78999999999999999999986432      3477999999999999999999853

>KOG0550|consensus

Probab=99.45  E-value=9.2e-14  Score=131.37  Aligned_cols=65  Identities=55%  Similarity=0.811  Sum_probs=60.6

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRATYDRY   66 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~----~~~~~f~~i~~Ay~~L~d~~~r~~YD~~   66 (349)
                      +.+|||.||||+++|+..|||+|||++|+.||||+|.    +++.+|+++-+||.+|+||.+|..||..
T Consensus       371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            3589999999999999999999999999999999985    4678999999999999999999999973

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.41  E-value=3e-13  Score=117.06  Aligned_cols=62  Identities=29%  Similarity=0.476  Sum_probs=55.6

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972           4 TKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR   65 (349)
Q Consensus         4 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~   65 (349)
                      .|||++|||++.  ++..+|+++||+|++++|||+.+.        +.+.|..|++||++|+||.+|+.|+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            489999999996  688999999999999999999642        34679999999999999999999984

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.41  E-value=2e-13  Score=109.16  Aligned_cols=54  Identities=26%  Similarity=0.419  Sum_probs=49.6

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLS   55 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~   55 (349)
                      |...++|+||||+++|+.+||++|||+|++++|||++ ++.+.|++|++||++|.
T Consensus        62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence            4567999999999999999999999999999999985 56789999999999985

>KOG0722|consensus

Probab=99.41  E-value=8e-14  Score=123.55  Aligned_cols=64  Identities=45%  Similarity=0.771  Sum_probs=59.5

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRY   66 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~   66 (349)
                      ..|+|++|||+++|+.+||.+|||+||+++|||+++  ++.+.|..|.+|||+|.|.+.|..||-+
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence            368999999999999999999999999999999985  4567899999999999999999999965

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.41  E-value=4.5e-13  Score=115.77  Aligned_cols=65  Identities=26%  Similarity=0.446  Sum_probs=58.9

Q ss_pred             CCccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972           1 MADTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR   65 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~   65 (349)
                      |...+||++|||++.  .+..+|+++||+|++++|||++..        +.+.|..||+||++|+||.+|+.|+.
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            678999999999997  568999999999999999999742        34679999999999999999999995

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=3.4e-13  Score=130.82  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=49.9

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEe
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTE  271 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l  271 (349)
                      .++|+||+|+++|++++|+|+|.+.. ++.+|||||+|++..|+.|++++.+|+.++
T Consensus       304 ~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l  360 (369)
T PRK14282        304 TTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL  360 (369)
T ss_pred             EEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999999999864 356899999999999999999998876653

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=1e-12  Score=114.01  Aligned_cols=63  Identities=25%  Similarity=0.411  Sum_probs=55.8

Q ss_pred             ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972           3 DTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR   65 (349)
Q Consensus         3 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~   65 (349)
                      ..|||++|||++.  ++..+|+++||+|++++|||+++.        +.+.+..||+||++|+||.+|+.|+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            5799999999995  689999999999999999999752        23446899999999999999999994

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.35  E-value=9.7e-13  Score=127.47  Aligned_cols=56  Identities=13%  Similarity=0.310  Sum_probs=50.6

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE  271 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l  271 (349)
                      .++|+||+|+++|++++|+|+|.+.++ ..+|||||+|+|..|+.|++++.+|+.++
T Consensus       297 ~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~  353 (365)
T PRK14290        297 KYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF  353 (365)
T ss_pred             eEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999999998755 46899999999999999999999887764

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=1e-12  Score=127.42  Aligned_cols=57  Identities=26%  Similarity=0.336  Sum_probs=49.9

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEee
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTET  272 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~  272 (349)
                      .++|.||+|+++|++++|+|+|++.++ ..+|||||+|+|..|+.|++++.+|+.++.
T Consensus       291 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~  348 (366)
T PRK14294        291 ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA  348 (366)
T ss_pred             cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999998754 468999999999999999999887776543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=2.6e-12  Score=124.42  Aligned_cols=55  Identities=18%  Similarity=0.416  Sum_probs=48.3

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCCC-CCccEEEEEEEccCCccccccceeEEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDRFQRQGINLVTT  270 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~  270 (349)
                      .++|+||+|+++|++++|+|+|.+.++. ..|||+|+|++..|+.|++++..|+.+
T Consensus       294 ~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~  349 (365)
T PRK14285        294 KIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN  349 (365)
T ss_pred             EEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            6899999999999999999999987554 469999999999999999988765544

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.33  E-value=1.1e-12  Score=127.52  Aligned_cols=56  Identities=13%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE  271 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l  271 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ...|||||+++|..++.|++++.+|+.++
T Consensus       292 ~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l  348 (377)
T PRK14298        292 KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF  348 (377)
T ss_pred             CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999998654 45799999999999999999998776654

>KOG0720|consensus

Probab=99.33  E-value=8.8e-13  Score=126.04  Aligned_cols=64  Identities=44%  Similarity=0.698  Sum_probs=61.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYDRY   66 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~--~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~   66 (349)
                      .+|+|.+|||+.+++.++|||.||++|+.-|||||  +.|+|.|+.+..|||+|+|+.+|..||.-
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            47999999999999999999999999999999998  57899999999999999999999999974

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.28  E-value=4.1e-12  Score=123.48  Aligned_cols=56  Identities=13%  Similarity=0.223  Sum_probs=49.6

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE  271 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l  271 (349)
                      .++|+||+|+++|++++|+|+|.+..+ +..|||||+|+|..++.|++++.+|+.++
T Consensus       289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l  345 (371)
T PRK10767        289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF  345 (371)
T ss_pred             cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999998653 46799999999999999999998877654

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.28  E-value=6.1e-12  Score=122.85  Aligned_cols=118  Identities=24%  Similarity=0.499  Sum_probs=82.9

Q ss_pred             eeEeccCCCCCCCCC------CCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCC-------------
Q psy4972         139 KSVICSTCNGKGSKS------GATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK-------------  199 (349)
Q Consensus       139 ~~~~C~~C~G~G~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~-------------  199 (349)
                      ....|+.|+|+|...      ....+|+.|+|+|..             +..+|+.|.|.|.+...+             
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  255 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSI-------------IEDPCEECKGTGVTTRTRTINVRIPPGVEDG  255 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEE-------------eCCcCCCCCCCeEEEEeeeeEEEeCCCCCCC
Confidence            346799999999653      125789999999983             456899999998773100             


Q ss_pred             ---------CCCCcC--CCccEEEee-------------------------------------EEEEEEecCCCccCcEE
Q psy4972         200 ---------DRCGSC--AGRKTLSVK-------------------------------------KVLEVNVDKGMKEMQKI  231 (349)
Q Consensus       200 ---------~~C~~C--~g~g~~~~~-------------------------------------~~~~v~Ip~G~~~G~~i  231 (349)
                               +.-...  .|.-++.-.                                     ..++|+||+|+++|++|
T Consensus       256 ~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~i  335 (392)
T PRK14279        256 QRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRIL  335 (392)
T ss_pred             cEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEE
Confidence                     000000  011011000                                     05789999999999999


Q ss_pred             EEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEE
Q psy4972         232 YFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       232 ~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      +|+|+|.+..++..|||||+|+|.-++.++.+...++.
T Consensus       336 ri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~~~l~  373 (392)
T PRK14279        336 RVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAAEALE  373 (392)
T ss_pred             EECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            99999999766678999999999988877666554443

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.28  E-value=7.4e-12  Score=121.55  Aligned_cols=55  Identities=11%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTT  270 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~  270 (349)
                      .++|+||+|+++|++++|+|+|.+.++ ..+|||||+++|..+..|+.+...++.+
T Consensus       293 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~  348 (372)
T PRK14300        293 KVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEE  348 (372)
T ss_pred             EEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999999998754 5689999999999998887776554433

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.27  E-value=6.9e-12  Score=121.79  Aligned_cols=55  Identities=15%  Similarity=0.327  Sum_probs=47.2

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTT  270 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~  270 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ...|||||+++|..|+.++.+..+++.+
T Consensus       291 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~  346 (373)
T PRK14301        291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE  346 (373)
T ss_pred             cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999999998754 4579999999999998888777655544

>PHA02624 large T antigen; Provisional

Probab=99.25  E-value=5.7e-12  Score=126.20  Aligned_cols=59  Identities=32%  Similarity=0.531  Sum_probs=56.2

Q ss_pred             cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhh
Q psy4972           4 TKLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATY   63 (349)
Q Consensus         4 ~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~Y   63 (349)
                      +++|++|||+++|  +.++||+|||++|++||||++ +++++|++|++||++|+|+.+|..|
T Consensus        11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            6899999999999  999999999999999999997 4678999999999999999999999

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.24  E-value=1.3e-11  Score=120.56  Aligned_cols=56  Identities=13%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE  271 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l  271 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ..+|||||+|+|..++.++.++..|+.++
T Consensus       307 ~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l  363 (391)
T PRK14284        307 TCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF  363 (391)
T ss_pred             EEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999998754 46899999999999998888777665443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.24  E-value=1.9e-11  Score=118.59  Aligned_cols=54  Identities=22%  Similarity=0.436  Sum_probs=46.0

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCCC-CCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      .++|+||+|+++|++++|+|+|.+.++. ..|||||+++|..|+.|+.+...++.
T Consensus       286 ~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~  340 (369)
T PRK14288        286 ELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLE  340 (369)
T ss_pred             EEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999999987654 46999999999999988877654443

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.23  E-value=6.2e-12  Score=116.45  Aligned_cols=54  Identities=54%  Similarity=0.734  Sum_probs=49.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc----------chHHHHHHHHHHHHhccc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----------EAGDKFKEISFAYEVLSD   56 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~----------~~~~~f~~i~~Ay~~L~d   56 (349)
                      ..++|++|||+++||.+|||+|||+|+++||||++.          .++++|++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999952          256899999999999975

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.23  E-value=1.4e-11  Score=119.58  Aligned_cols=56  Identities=13%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEEe
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTE  271 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~l  271 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ...|||||+|+|..++.++++...|+.++
T Consensus       289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l  345 (371)
T PRK14287        289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF  345 (371)
T ss_pred             CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999999998654 45799999999999999988876655443

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.22  E-value=1.8e-11  Score=118.38  Aligned_cols=53  Identities=11%  Similarity=0.328  Sum_probs=46.3

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLV  268 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~  268 (349)
                      .++|.||+|+++|++++|+|+|.+..+ ..+|||||+++|..++.+++++.+++
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l  347 (354)
T TIGR02349       294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL  347 (354)
T ss_pred             eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            578999999999999999999998754 36899999999999998888776554

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=2.1e-11  Score=118.93  Aligned_cols=55  Identities=16%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTT  270 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~  270 (349)
                      .++|+||+|+++|++++|+|+|.+..++.+|||||+++|.-+..++.....++.+
T Consensus       314 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~  368 (389)
T PRK14295        314 PVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREALEA  368 (389)
T ss_pred             EEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            6899999999999999999999987666789999999999887766665544433

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=3e-11  Score=117.51  Aligned_cols=54  Identities=22%  Similarity=0.311  Sum_probs=44.8

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      .++|.||+|+++|++++|+|+|.+..+ ...|||||+++|.-+..++.+...++.
T Consensus       291 ~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~  345 (378)
T PRK14278        291 PSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLR  345 (378)
T ss_pred             eEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence            679999999999999999999998643 467999999999988777666554443

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=2.4e-11  Score=118.20  Aligned_cols=56  Identities=16%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCCC--CCccEEEEEEEccCCccccccceeEEEe
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQ--EPGDVIIVLEQKPHDRFQRQGINLVTTE  271 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~--~~GDl~v~i~v~~~~~f~r~g~dL~~~l  271 (349)
                      .++|+||+|+++|++++|+|+|.+..++  ..|||||.++|..++.+++++.+++.++
T Consensus       294 ~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l  351 (374)
T PRK14293        294 PVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL  351 (374)
T ss_pred             CEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999999986543  5799999999999999999998776654

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=3e-11  Score=117.28  Aligned_cols=54  Identities=15%  Similarity=0.272  Sum_probs=45.7

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ...|||||+|+|.-++.++.+..+++.
T Consensus       298 ~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~  352 (372)
T PRK14286        298 KAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIE  352 (372)
T ss_pred             EEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence            589999999999999999999998654 457999999999988877776665443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=2.3e-11  Score=119.08  Aligned_cols=54  Identities=13%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ...|||||+++|.-+..++.+...++.
T Consensus       313 ~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~  367 (397)
T PRK14281        313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLK  367 (397)
T ss_pred             cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence            578999999999999999999998654 467999999999988777666654443

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.19  E-value=3.2e-11  Score=117.49  Aligned_cols=54  Identities=15%  Similarity=0.273  Sum_probs=45.0

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ..+|||||+|+|..+..++.+...++.
T Consensus       297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~  351 (380)
T PRK14276        297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALK  351 (380)
T ss_pred             cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            578999999999999999999998754 467999999999988877666554443

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.18  E-value=1.4e-11  Score=117.23  Aligned_cols=67  Identities=43%  Similarity=0.807  Sum_probs=61.6

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRYGIQG   70 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   70 (349)
                      -|+|+||||+.+++..+||++||+|++++|||+-+.        -+|++.+|++||+.|+|...|+.|-.||...
T Consensus        98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd  172 (610)
T COG5407          98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD  172 (610)
T ss_pred             CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence            489999999999999999999999999999999652        4688999999999999999999999998643

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.18  E-value=4.9e-11  Score=116.00  Aligned_cols=54  Identities=13%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ...|||||+++|..++.++.+...++.
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~  348 (376)
T PRK14280        294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLR  348 (376)
T ss_pred             eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            578999999999999999999998653 467999999999988777665554443

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=6.5e-11  Score=115.36  Aligned_cols=53  Identities=9%  Similarity=0.191  Sum_probs=44.2

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLV  268 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~  268 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ...|||||+|+|.-++.++.+...++
T Consensus       299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l  352 (380)
T PRK14297        299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL  352 (380)
T ss_pred             cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence            578999999999999999999998654 46799999999998877766555443

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.14  E-value=6.3e-11  Score=115.75  Aligned_cols=52  Identities=12%  Similarity=0.247  Sum_probs=43.3

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCcccccccee
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINL  267 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL  267 (349)
                      .++|.||+|+++|++++++|+|.+.++ +..|||||+|+|.-+..++.+...|
T Consensus       305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~  357 (386)
T PRK14289        305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQT  357 (386)
T ss_pred             eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHH
Confidence            689999999999999999999998654 4689999999999776666555433

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.14  E-value=8.6e-11  Score=114.05  Aligned_cols=53  Identities=15%  Similarity=0.285  Sum_probs=43.6

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCC--CCCCccEEEEEEEccCCccccccceeE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQP--DQEPGDVIIVLEQKPHDRFQRQGINLV  268 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~--~~~~GDl~v~i~v~~~~~f~r~g~dL~  268 (349)
                      .++|+||+++++|++++|+|+|.+..  .+..|||||+++|.-++.++.+...|+
T Consensus       301 ~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l  355 (372)
T PRK14296        301 DIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELI  355 (372)
T ss_pred             CEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHH
Confidence            58899999999999999999999743  245799999999998877766655443

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.12  E-value=9.6e-11  Score=113.90  Aligned_cols=54  Identities=17%  Similarity=0.249  Sum_probs=46.2

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      ..+|.||+|+++|++++|+|+|.+..+ ..+|||||+++|..++.|+.+...|+.
T Consensus       289 ~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~  343 (371)
T PRK14292        289 PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE  343 (371)
T ss_pred             CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            357999999999999999999998754 467999999999999988877765554

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.12  E-value=1.2e-10  Score=113.68  Aligned_cols=54  Identities=17%  Similarity=0.301  Sum_probs=44.0

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      .++|.||+|+++|++++|+|+|.+..+ ...|||||+++|.-++.++.+..+++.
T Consensus       306 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~  360 (386)
T PRK14277        306 KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLR  360 (386)
T ss_pred             CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHH
Confidence            468999999999999999999998644 457999999999977766666554443

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.10  E-value=1.2e-10  Score=114.43  Aligned_cols=53  Identities=19%  Similarity=0.232  Sum_probs=43.5

Q ss_pred             EEEEEecCC--CccCcEEEEcCCCCCCCC--CCCccEEEEEEEccC--CccccccceeE
Q psy4972         216 VLEVNVDKG--MKEMQKIYFRGEGDQQPD--QEPGDVIIVLEQKPH--DRFQRQGINLV  268 (349)
Q Consensus       216 ~~~v~Ip~G--~~~G~~i~~~g~G~~~~~--~~~GDl~v~i~v~~~--~~f~r~g~dL~  268 (349)
                      .+.|+||+|  +++|++++|+|+|.+..+  +..|||||+++|.-+  ..++.+...++
T Consensus       302 ~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll  360 (421)
T PTZ00037        302 KLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEIL  360 (421)
T ss_pred             eEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHH
Confidence            689999999  999999999999998643  357999999999977  66666554433

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.08  E-value=4e-10  Score=109.86  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=38.4

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCC
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHD  258 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~  258 (349)
                      .++|+||+|+++|++++|+|+|.+..+ ..+|||||+++|.-+.
T Consensus       303 ~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~  346 (382)
T PRK14291        303 KEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK  346 (382)
T ss_pred             EEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence            589999999999999999999998754 4679999999998765

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.06  E-value=3.2e-10  Score=110.42  Aligned_cols=55  Identities=11%  Similarity=0.248  Sum_probs=44.5

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCCccccccceeEEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTT  270 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~  270 (349)
                      .++|.||+|+++|++++|+|+|.+..+ ...|||||+++|.-++.++.+...++.+
T Consensus       297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~  352 (378)
T PRK14283        297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLRE  352 (378)
T ss_pred             eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence            578999999999999999999998643 4679999999998777666655544433

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.96  E-value=1.4e-09  Score=94.12  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=55.1

Q ss_pred             ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972           3 DTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR   65 (349)
Q Consensus         3 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~   65 (349)
                      +.|||++|||++.  .+..+++++|++|.+++|||+...        +.+.-..||+||.+|+||.+|+.|=-
T Consensus         1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            4799999999997  899999999999999999999632        23456789999999999999998853

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.89  E-value=2.6e-09  Score=91.22  Aligned_cols=51  Identities=29%  Similarity=0.448  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972          16 ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRY   66 (349)
Q Consensus        16 a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~   66 (349)
                      .+..+|+++||+|++++|||+.+.        +.+.|..||+||++|+||.+|+.|+.-
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            477899999999999999998532        457899999999999999999999964

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.86  E-value=9e-09  Score=96.85  Aligned_cols=71  Identities=27%  Similarity=0.427  Sum_probs=63.6

Q ss_pred             cccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCC
Q psy4972         260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE  339 (349)
Q Consensus       260 f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~  339 (349)
                      +.|.|.|+++.+.|||.||++|++++| +++++++.|+||+|  +++|++++++|+|++.       |||||+|+|.-+.
T Consensus       125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~  194 (291)
T PRK14299        125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP  194 (291)
T ss_pred             CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence            357899999999999999999999998 67888899999999  8999999999999862       9999999998554


Q ss_pred             C
Q psy4972         340 S  340 (349)
Q Consensus       340 ~  340 (349)
                      .
T Consensus       195 ~  195 (291)
T PRK14299        195 V  195 (291)
T ss_pred             C
Confidence            4

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.83  E-value=8.8e-09  Score=81.94  Aligned_cols=61  Identities=26%  Similarity=0.698  Sum_probs=49.4

Q ss_pred             eeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEe
Q psy4972         139 KSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSV  213 (349)
Q Consensus       139 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~  213 (349)
                      ..+.|..|+|+|..     +|+.|+|+|.+....  ++  .++.+.+|+.|+|.|+.     +|+.|+|++++..
T Consensus        40 ~~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~  100 (111)
T PLN03165         40 NTQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR  100 (111)
T ss_pred             cCCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence            45789999999973     899999999876433  32  24688999999999975     4999999988754

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=8.1e-09  Score=92.77  Aligned_cols=65  Identities=42%  Similarity=0.559  Sum_probs=58.5

Q ss_pred             ccccccccCCCC---CCCHHHHHHHHHHHHHHhCCCCC-----cchHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972           3 DTKLYEVLGVSK---SASDQEIKKAYRKLAKEFHPDKN-----PEAGDKFKEISFAYEVLSDEKKRATYDRYG   67 (349)
Q Consensus         3 ~~~~y~iLgv~~---~a~~~~Ik~ayr~l~~~~hPd~~-----~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   67 (349)
                      ..|+|.+|||+.   .|++.+|.+|.++...+||||+.     .+..+-|+.|+.||++|+|+.+|.+||.--
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            368999999997   58899999999999999999997     345788999999999999999999999754

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.76  E-value=7.7e-09  Score=78.47  Aligned_cols=49  Identities=20%  Similarity=0.480  Sum_probs=37.6

Q ss_pred             EEEEEEecCCCccCcEEEEcCCCCCCCC--CCCccEEEEEEEccCCccccc
Q psy4972         215 KVLEVNVDKGMKEMQKIYFRGEGDQQPD--QEPGDVIIVLEQKPHDRFQRQ  263 (349)
Q Consensus       215 ~~~~v~Ip~G~~~G~~i~~~g~G~~~~~--~~~GDl~v~i~v~~~~~f~r~  263 (349)
                      +.++|+||+|+++|++++++|+|.+...  ...|||+|+++|.-+..++.+
T Consensus        27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~   77 (81)
T PF01556_consen   27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPE   77 (81)
T ss_dssp             -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHH
T ss_pred             CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHH
Confidence            4788889999999999999999997543  368999999999977766544

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>KOG1150|consensus

Probab=98.72  E-value=1.5e-08  Score=87.28  Aligned_cols=60  Identities=40%  Similarity=0.686  Sum_probs=54.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhh
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRAT   62 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~   62 (349)
                      +-++|++|.|.+..+.++||+.||+|++..|||+||.    |...|.-+.+||..|-|+.-|..
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            3578999999999999999999999999999999985    56789999999999999885543

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.67  E-value=8e-08  Score=91.09  Aligned_cols=75  Identities=19%  Similarity=0.362  Sum_probs=62.6

Q ss_pred             cccceeEEEeecCHHHHhCCcEEEE----ecCC--C-------cEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCc
Q psy4972         262 RQGINLVTTETITLTEALCGFTKVI----KHLD--D-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGT  328 (349)
Q Consensus       262 r~g~dL~~~l~I~l~~al~G~~~~i----~~l~--g-------~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gd  328 (349)
                      +.|.|+++.+.|+|.|++.|+..+|    ..++  |       +++.|.||+|  +++|++++++|+|+|..++ ..+||
T Consensus       115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GD  191 (306)
T PRK10266        115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGENG-GPNGD  191 (306)
T ss_pred             CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCCCC-CCCcc
Confidence            4688999999999999999996655    3343  3       4689999999  8999999999999996543 35899


Q ss_pred             EEEEEEEEcCCC
Q psy4972         329 LYIKFDVQFPES  340 (349)
Q Consensus       329 l~v~~~v~~P~~  340 (349)
                      |||+|+|. |..
T Consensus       192 l~v~i~v~-ph~  202 (306)
T PRK10266        192 LWLVIHIA-PHP  202 (306)
T ss_pred             EEEEEEEc-CCC
Confidence            99999998 765

>KOG1789|consensus

Probab=98.57  E-value=5.8e-08  Score=100.82  Aligned_cols=56  Identities=39%  Similarity=0.664  Sum_probs=49.0

Q ss_pred             CCccccccccCCCCCC----CHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccc
Q psy4972           1 MADTKLYEVLGVSKSA----SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSD   56 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a----~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d   56 (349)
                      |..-+.|+||.|+-+-    ..+.||++|++||.+|||||||+-.++|..+++|||.|+.
T Consensus      1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence            3446789999998642    4478999999999999999999999999999999999984

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=98.38  E-value=4.6e-07  Score=78.84  Aligned_cols=51  Identities=20%  Similarity=0.492  Sum_probs=44.4

Q ss_pred             eeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEc
Q psy4972         183 QARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFR  234 (349)
Q Consensus       183 ~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~  234 (349)
                      ..+|+.|+|+|+++...++|+.|+|+|++..+....+++ .|+.+|++|++.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            457888888888885558899999999999999999999 999999999876

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0568|consensus

Probab=98.18  E-value=1.6e-06  Score=76.46  Aligned_cols=54  Identities=31%  Similarity=0.655  Sum_probs=48.4

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHH-hccch
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYE-VLSDE   57 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~-~L~d~   57 (349)
                      +.||.+|||...|+.++++.||..|++++|||...  .+.++|.+|.+||. ||+..
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999875  35789999999998 77643

>KOG0723|consensus

Probab=98.18  E-value=2.1e-06  Score=66.68  Aligned_cols=56  Identities=27%  Similarity=0.343  Sum_probs=47.1

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccch
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDE   57 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~   57 (349)
                      |..++.-.||||++.++.+.||+|+|++....|||+... .-.-..||||+++|...
T Consensus        53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-PYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-PYLASKINEAKDLLEGT  108 (112)
T ss_pred             cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-HHHHHHHHHHHHHHhcc
Confidence            556677789999999999999999999999999999743 33345699999999754

>KOG0712|consensus

Probab=98.03  E-value=1.2e-05  Score=76.08  Aligned_cols=43  Identities=23%  Similarity=0.282  Sum_probs=38.5

Q ss_pred             EEEEEecCC--CccCcEEEEcCCCCCCCCCCCccEEEEEEEccCC
Q psy4972         216 VLEVNVDKG--MKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHD  258 (349)
Q Consensus       216 ~~~v~Ip~G--~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~  258 (349)
                      .+++.++||  +.+|++.++.|+|++..+...|||||.+.|+-++
T Consensus       280 ~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  280 LLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK  324 (337)
T ss_pred             eEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence            788999999  9999999999999997655599999999998666

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.85  E-value=8.4e-06  Score=80.79  Aligned_cols=12  Identities=42%  Similarity=1.174  Sum_probs=6.4

Q ss_pred             eeCCCCCCcceE
Q psy4972         184 ARCSDCQGEGEV  195 (349)
Q Consensus       184 ~~C~~C~G~G~~  195 (349)
                      .+|+.|+|+|++
T Consensus        69 ~~c~~c~G~gkv   80 (715)
T COG1107          69 DTCPECGGTGKV   80 (715)
T ss_pred             eecccCCCceeE
Confidence            355555555554

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=97.82  E-value=9.1e-05  Score=76.28  Aligned_cols=86  Identities=49%  Similarity=0.856  Sum_probs=73.1

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCCCCCC
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGGGGAD   81 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~~g~~   81 (349)
                      +|||+||||+++|+.++||+|||+||++||||+++  .+.++|++|++||++|+||.+|+.||+||..+....   +++.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~e---~gf~   78 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDRE---DDFD   78 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccccc---cccc
Confidence            69999999999999999999999999999999986  567899999999999999999999999998765321   2344


Q ss_pred             ChhhHHHhhhc
Q psy4972          82 FSDDLISQLFG   92 (349)
Q Consensus        82 ~~~d~f~~~fg   92 (349)
                      +..++|.+||+
T Consensus        79 f~~DIF~sfFe   89 (871)
T TIGR03835        79 FQADVFNSFFE   89 (871)
T ss_pred             hhHHHHHHHhh
Confidence            44567777665

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG2813|consensus

Probab=97.77  E-value=2.9e-05  Score=71.68  Aligned_cols=60  Identities=33%  Similarity=0.825  Sum_probs=41.6

Q ss_pred             eEeccCCCCCCCCC--------------------CCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCC
Q psy4972         140 SVICSTCNGKGSKS--------------------GATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK  199 (349)
Q Consensus       140 ~~~C~~C~G~G~~~--------------------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~  199 (349)
                      ...|+.|+|+|...                    ++...|..|+|+|.                .+|++|.|+|.     
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~----------------~~C~tC~grG~-----  256 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI----------------KECHTCKGRGK-----  256 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc----------------ccCCcccCCCC-----
Confidence            46688999888422                    12345777777775                37899999985     


Q ss_pred             CCCCcCCCccEEEeeEEEEEE
Q psy4972         200 DRCGSCAGRKTLSVKKVLEVN  220 (349)
Q Consensus       200 ~~C~~C~g~g~~~~~~~~~v~  220 (349)
                      .+|.+|.|.|.......+.|.
T Consensus       257 k~C~TC~gtgsll~~t~~vV~  277 (406)
T KOG2813|consen  257 KPCTTCSGTGSLLNYTRIVVY  277 (406)
T ss_pred             cccccccCccceeeeEEEEEE
Confidence            469999998877766555444

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.57  E-value=3.3e-05  Score=56.09  Aligned_cols=42  Identities=38%  Similarity=0.890  Sum_probs=29.8

Q ss_pred             eeEeccCCCCCCCCCC----------CcccCCCCCccceEEEEEEecCccceEe-eeeCCCCCCcc
Q psy4972         139 KSVICSTCNGKGSKSG----------ATFTCASCRGCGFKIHHRIIGPNMTQQI-QARCSDCQGEG  193 (349)
Q Consensus       139 ~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~~C~~C~G~G  193 (349)
                      ....|+.|+|+|....          ...+|+.|+|+|.             .+ ..+|+.|+|.|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~-------------~i~~~~C~~C~G~g   66 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGK-------------IIEKDPCKTCKGSG   66 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSE-------------E-TSSB-SSSTTSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceee-------------EECCCCCCCCCCcC
Confidence            3468999999996531          2568999999998             34 67999999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.15  E-value=0.00041  Score=69.17  Aligned_cols=73  Identities=26%  Similarity=0.589  Sum_probs=53.3

Q ss_pred             EeccCCCCCCCCCCCcccCCCCCccceEEEEEEe--------cCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEE
Q psy4972         141 VICSTCNGKGSKSGATFTCASCRGCGFKIHHRII--------GPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLS  212 (349)
Q Consensus       141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~--------~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~  212 (349)
                      ..|+.|+|+|...-....|+.|+|+|.+......        +.-++.....+|+.|.|+|.+. -...|+.|.|+|.+.
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~-v~~~c~~c~G~gkv~   81 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT-VYDTCPECGGTGKVL   81 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE-EEeecccCCCceeEE
Confidence            4699999999877677889999999986433211        1112223467999999999885 367899999987765


Q ss_pred             ee
Q psy4972         213 VK  214 (349)
Q Consensus       213 ~~  214 (349)
                      .-
T Consensus        82 ~c   83 (715)
T COG1107          82 TC   83 (715)
T ss_pred             ee
Confidence            43

>KOG2813|consensus

Probab=97.03  E-value=0.00037  Score=64.53  Aligned_cols=80  Identities=25%  Similarity=0.615  Sum_probs=52.3

Q ss_pred             hhhhcCCcceeeeeee---EeccCCCCCCCCCCCcccCCCCCccc--------eEEEEEEec-CccceEeeeeCCCCCCc
Q psy4972         125 EDLYNGKTTKLQLTKS---VICSTCNGKGSKSGATFTCASCRGCG--------FKIHHRIIG-PNMTQQIQARCSDCQGE  192 (349)
Q Consensus       125 ~e~~~G~~~~i~~~~~---~~C~~C~G~G~~~~~~~~C~~C~G~G--------~~~~~~~~~-~g~~~~~~~~C~~C~G~  192 (349)
                      --++.|....+.+...   ..|..|.|.|.     ..|+.|+|.|        .+......| +----.....|..|+|+
T Consensus       169 p~mf~~~~~~~~vphs~~v~~ch~c~gRG~-----~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~  243 (406)
T KOG2813|consen  169 PGMFSGVAHPAVVPHSMIVTFCHACLGRGA-----MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGR  243 (406)
T ss_pred             CCcccccccceeccchHhhhhhhcccCCCc-----eeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCC
Confidence            3455555555555543   56999999995     5799999999        332233333 11111245679999999


Q ss_pred             ceEEcCCCCCCcCCCccEEEee
Q psy4972         193 GEVMNEKDRCGSCAGRKTLSVK  214 (349)
Q Consensus       193 G~~~~~~~~C~~C~g~g~~~~~  214 (349)
                      |.     .+|++|+|.|.+.-.
T Consensus       244 G~-----~~C~tC~grG~k~C~  260 (406)
T KOG2813|consen  244 GI-----KECHTCKGRGKKPCT  260 (406)
T ss_pred             Cc-----ccCCcccCCCCcccc
Confidence            94     569999998876543

>KOG3192|consensus

Probab=96.63  E-value=0.0022  Score=53.61  Aligned_cols=63  Identities=25%  Similarity=0.574  Sum_probs=50.4

Q ss_pred             ccccccccCCCC--CCCHHHHHHHHHHHHHHhCCCCC--c------chHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972           3 DTKLYEVLGVSK--SASDQEIKKAYRKLAKEFHPDKN--P------EAGDKFKEISFAYEVLSDEKKRATYDR   65 (349)
Q Consensus         3 ~~~~y~iLgv~~--~a~~~~Ik~ayr~l~~~~hPd~~--~------~~~~~f~~i~~Ay~~L~d~~~r~~YD~   65 (349)
                      .++||.++|...  ...+.....-|.-..+++|||+.  +      -+.+.-.++++||.+|.||.+|+.|=.
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            368999987544  45666677689999999999983  2      256778999999999999999999863

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.42  E-value=0.0019  Score=51.57  Aligned_cols=39  Identities=36%  Similarity=0.895  Sum_probs=31.3

Q ss_pred             eccCCCCCCCCC----C---CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972         142 ICSTCNGKGSKS----G---ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM  196 (349)
Q Consensus       142 ~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~  196 (349)
                      .|+.|+|+|...    +   ...+|+.|+|+|..                .|+.|.|+|.+.
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------------~C~~C~G~G~~~   99 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------------TCTTCQGSGIQP   99 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------------eCCCCCCCEEEe
Confidence            799999999643    1   15689999999961                499999999875

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.86  E-value=0.0053  Score=53.64  Aligned_cols=29  Identities=31%  Similarity=0.665  Sum_probs=16.0

Q ss_pred             eEeccCCCCCCCCCCCcccCCCCCccceE
Q psy4972         140 SVICSTCNGKGSKSGATFTCASCRGCGFK  168 (349)
Q Consensus       140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~  168 (349)
                      ...|+.|+|+|.......+|+.|+|+|.+
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v  127 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF  127 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence            55666666666543323456666665554

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=0.022  Score=49.53  Aligned_cols=62  Identities=27%  Similarity=0.435  Sum_probs=48.7

Q ss_pred             ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972           5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRY   66 (349)
Q Consensus         5 ~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~   66 (349)
                      +++...+..+.+  ..+..+..|+.+.+.+|||+...        +.+.+..++.||.+|.||-+|+.|=.-
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la   73 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA   73 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            455566666654  34568999999999999999742        235788999999999999999998753

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=94.75  E-value=0.039  Score=45.27  Aligned_cols=54  Identities=28%  Similarity=0.285  Sum_probs=38.5

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchh
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEK   58 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~   58 (349)
                      .....||+|++..+.++|.+.|.+|....+|++. ++.-.-..|..|.|.|..+.
T Consensus        58 ~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   58 DEARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999976 44444455777888887554

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0431|consensus

Probab=93.03  E-value=0.11  Score=51.89  Aligned_cols=28  Identities=36%  Similarity=0.528  Sum_probs=23.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCc
Q psy4972          11 GVSKSASDQEIKKAYRKLAKEFHPDKNP   38 (349)
Q Consensus        11 gv~~~a~~~~Ik~ayr~l~~~~hPd~~~   38 (349)
                      .+..=.+.++|||||||..+..||||.+
T Consensus       395 sltDLVtp~~VKKaYrKA~L~VHPDKlq  422 (453)
T KOG0431|consen  395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQ  422 (453)
T ss_pred             chhhccCHHHHHHHHHhhhheeCccccc
Confidence            3444568999999999999999999975

>KOG2824|consensus

Probab=92.66  E-value=0.17  Score=46.57  Aligned_cols=65  Identities=25%  Similarity=0.545  Sum_probs=43.9

Q ss_pred             ChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCC
Q psy4972         123 SLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRC  202 (349)
Q Consensus       123 sl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C  202 (349)
                      -|..++.|..    -...-.|..|.|.+.     .+|..|+|+=++... ....    ..-.+|+.|+-.|-+.     |
T Consensus       216 kL~~lL~~~p----~~~~~~C~~CGg~rF-----lpC~~C~GS~kv~~~-~~~~----~~~~rC~~CNENGLvr-----C  276 (281)
T KOG2824|consen  216 KLGKLLKGIP----CEGGGVCESCGGARF-----LPCSNCHGSCKVHEE-EEDD----GGVLRCLECNENGLVR-----C  276 (281)
T ss_pred             hHHHHHhcCC----CCCCCcCCCcCCcce-----EecCCCCCceeeeee-ccCC----CcEEECcccCCCCcee-----C
Confidence            3666666665    223356999998874     579999999876542 0111    2345899999999765     8


Q ss_pred             CcCC
Q psy4972         203 GSCA  206 (349)
Q Consensus       203 ~~C~  206 (349)
                      +.|.
T Consensus       277 p~Cs  280 (281)
T KOG2824|consen  277 PVCS  280 (281)
T ss_pred             CccC
Confidence            8885

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=91.18  E-value=0.083  Score=45.89  Aligned_cols=34  Identities=53%  Similarity=0.729  Sum_probs=32.2

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN   37 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~   37 (349)
                      .+.|.+|++...++..+|+++|+++....|||+-
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a  146 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKA  146 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHH
Confidence            5789999999999999999999999999999984

>KOG0715|consensus

Probab=90.42  E-value=0.35  Score=45.53  Aligned_cols=34  Identities=24%  Similarity=0.549  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEc
Q psy4972         293 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQF  337 (349)
Q Consensus       293 ~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~  337 (349)
                      .+.|.+|++  +..+.++++++.|-         .||+|++.|.-
T Consensus       234 ~i~i~~~~g--~~~~~~l~~~~~~~---------~~l~v~~~v~~  267 (288)
T KOG0715|consen  234 DIMIVLPAG--VRSADTLRFAGHGN---------DDLFVRLIVAK  267 (288)
T ss_pred             eEEeecCcc--cccccEEEEecCCc---------ceEEEEEEecc
Confidence            467788888  78999999998863         29999998874

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=90.28  E-value=0.27  Score=41.50  Aligned_cols=38  Identities=24%  Similarity=0.592  Sum_probs=21.9

Q ss_pred             hhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEE
Q psy4972         124 LEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKI  169 (349)
Q Consensus       124 l~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~  169 (349)
                      |.+++.+....   .....|..|.|.+.     .+|..|+|+=++.
T Consensus        86 L~~lL~~~~~~---~~~~~C~~Cgg~rf-----v~C~~C~Gs~k~~  123 (147)
T cd03031          86 LRKLLKGIRAR---AGGGVCEGCGGARF-----VPCSECNGSCKVF  123 (147)
T ss_pred             HHHHHhhcccc---cCCCCCCCCCCcCe-----EECCCCCCcceEE
Confidence            56666665221   12345777777763     4577777776653

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=89.17  E-value=0.74  Score=40.69  Aligned_cols=40  Identities=28%  Similarity=0.338  Sum_probs=32.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccch
Q psy4972          13 SKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDE   57 (349)
Q Consensus        13 ~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~   57 (349)
                      +++||.+||.+|+.++..+|     .++++.-.+|..||+.+.-.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y-----~gd~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY-----AGDEKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHH
Confidence            57999999999999999988     34455667799999876543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=89.15  E-value=0.39  Score=34.07  Aligned_cols=48  Identities=23%  Similarity=0.418  Sum_probs=34.1

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccc
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSD   56 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d   56 (349)
                      |.-.++|+.|||+++.+.+.|-.+|+.... -    +|   .....+.+|..++.+
T Consensus         2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~----~P---~~~~~~r~AL~~Ia~   49 (62)
T PF13446_consen    2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN-D----DP---SQKDTLREALRVIAE   49 (62)
T ss_pred             CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-c----Ch---HhHHHHHHHHHHHHH
Confidence            344678999999999999999999999777 2    22   223344555555543

>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1

Probab=86.28  E-value=3.2  Score=35.55  Aligned_cols=20  Identities=15%  Similarity=0.119  Sum_probs=16.2

Q ss_pred             EEEEEecCCCccCcEEEEcC
Q psy4972         216 VLEVNVDKGMKEMQKIYFRG  235 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g  235 (349)
                      .+.++||||...|..-.+.|
T Consensus        81 El~~ei~pg~~~g~itTVEG  100 (160)
T smart00709       81 ELDLEIPPGPLGGFITTVEG  100 (160)
T ss_pred             eeeEEecCCCCCcEEEehHH
Confidence            67888888888888877766

Also present in archaeal proteins.

>KOG2824|consensus

Probab=85.48  E-value=0.81  Score=42.20  Aligned_cols=40  Identities=33%  Similarity=0.684  Sum_probs=27.6

Q ss_pred             ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEc------CCCCCCcCCCccEEE
Q psy4972         157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMN------EKDRCGSCAGRKTLS  212 (349)
Q Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~g~g~~~  212 (349)
                      ..|..|+|.+.+                +|..|+|+-++..      .-..|..|+-.|.+.
T Consensus       230 ~~C~~CGg~rFl----------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr  275 (281)
T KOG2824|consen  230 GVCESCGGARFL----------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR  275 (281)
T ss_pred             CcCCCcCCcceE----------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence            468888877753                6888888877764      234688887766654

>TIGR00310 ZPR1_znf ZPR1 zinc finger domain

Probab=84.84  E-value=3.4  Score=36.42  Aligned_cols=20  Identities=15%  Similarity=0.245  Sum_probs=16.0

Q ss_pred             EEEEEecCC-CccCcEEEEcC
Q psy4972         216 VLEVNVDKG-MKEMQKIYFRG  235 (349)
Q Consensus       216 ~~~v~Ip~G-~~~G~~i~~~g  235 (349)
                      .+.++|||| +..|..-++.|
T Consensus        80 El~lei~pg~~~~G~iTTVEG  100 (192)
T TIGR00310        80 ELGLDIEPGPTSGGFITNLEG  100 (192)
T ss_pred             ceEEEECCCccCCceEEeeHh
Confidence            678888888 68888888865

>PRK04023 DNA polymerase II large subunit; Validated

Probab=84.30  E-value=1.1  Score=48.23  Aligned_cols=65  Identities=22%  Similarity=0.470  Sum_probs=45.3

Q ss_pred             Chhhhhc-CCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCC
Q psy4972         123 SLEDLYN-GKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDR  201 (349)
Q Consensus       123 sl~e~~~-G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~  201 (349)
                      ++.+|+. +...++.+.. ..|+.|+-.+    ....|+.|+..-              .....|+.|+-...    ...
T Consensus       609 ~i~~A~~~~g~~eVEVg~-RfCpsCG~~t----~~frCP~CG~~T--------------e~i~fCP~CG~~~~----~y~  665 (1121)
T PRK04023        609 DINKAAKYKGTIEVEIGR-RKCPSCGKET----FYRRCPFCGTHT--------------EPVYRCPRCGIEVE----EDE  665 (1121)
T ss_pred             cHHHHHhcCCceeecccC-ccCCCCCCcC----CcccCCCCCCCC--------------CcceeCccccCcCC----CCc
Confidence            5788887 6777777665 4599998875    346899998762              12347999965543    356


Q ss_pred             CCcCCCccE
Q psy4972         202 CGSCAGRKT  210 (349)
Q Consensus       202 C~~C~g~g~  210 (349)
                      |++|.-...
T Consensus       666 CPKCG~El~  674 (1121)
T PRK04023        666 CEKCGREPT  674 (1121)
T ss_pred             CCCCCCCCC
Confidence            999986533

>KOG0724|consensus

Probab=83.47  E-value=1.1  Score=42.86  Aligned_cols=51  Identities=37%  Similarity=0.623  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCc-------chHHHHHHHHHHHHhccchhhhhhhhcc
Q psy4972          16 ASDQEIKKAYRKLAKEFHPDKNP-------EAGDKFKEISFAYEVLSDEKKRATYDRY   66 (349)
Q Consensus        16 a~~~~Ik~ayr~l~~~~hPd~~~-------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~   66 (349)
                      ++..+|..+|+..++..||++..       ...+.|+.|.+||++|++..+|..+|..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~   61 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW   61 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence            56788999999999999999874       2457799999999999997766666654

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=82.69  E-value=1.9  Score=47.70  Aligned_cols=69  Identities=17%  Similarity=0.367  Sum_probs=44.0

Q ss_pred             Chhhhh--------cCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcce
Q psy4972         123 SLEDLY--------NGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE  194 (349)
Q Consensus       123 sl~e~~--------~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~  194 (349)
                      ++.+|+        .+...++.+. ...|+.|......    ..|+.|+..=.              ....|+.|+..=.
T Consensus       643 ~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGaev~  703 (1337)
T PRK14714        643 DVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAEVP  703 (1337)
T ss_pred             cHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCccC
Confidence            578888        5556666665 4679999986432    48999987632              1237999988410


Q ss_pred             E-EcCCCCCCcCCCccE
Q psy4972         195 V-MNEKDRCGSCAGRKT  210 (349)
Q Consensus       195 ~-~~~~~~C~~C~g~g~  210 (349)
                      . .+....|+.|...-.
T Consensus       704 ~des~a~~CP~CGtplv  720 (1337)
T PRK14714        704 PDESGRVECPRCDVELT  720 (1337)
T ss_pred             CCccccccCCCCCCccc
Confidence            0 000237999986543

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=82.23  E-value=1.5  Score=36.92  Aligned_cols=39  Identities=33%  Similarity=0.789  Sum_probs=30.6

Q ss_pred             ccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCC-------CCCCcCCCccEE
Q psy4972         157 FTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEK-------DRCGSCAGRKTL  211 (349)
Q Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~g~g~~  211 (349)
                      ..|..|.|.+.+                +|+.|+|+-++....       ..|+.|+-.|.+
T Consensus       100 ~~C~~Cgg~rfv----------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~  145 (147)
T cd03031         100 GVCEGCGGARFV----------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV  145 (147)
T ss_pred             CCCCCCCCcCeE----------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence            469999998863                799999998887544       489999877654

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=80.13  E-value=1.2  Score=48.62  Aligned_cols=33  Identities=21%  Similarity=0.537  Sum_probs=16.8

Q ss_pred             cCCCCCccceEEEEEEecCccceEeeeeCCCCCCcce
Q psy4972         158 TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE  194 (349)
Q Consensus       158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~  194 (349)
                      .|+.|.|.|.+....+    ++.....+|+.|+|+.+
T Consensus       738 ~C~~C~G~G~~~~~~~----f~~~~~~~C~~C~G~R~  770 (924)
T TIGR00630       738 RCEACQGDGVIKIEMH----FLPDVYVPCEVCKGKRY  770 (924)
T ss_pred             CCCCCccceEEEEEcc----CCCCcccCCCCcCCcee
Confidence            4777777776543211    22233445555555544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	349
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		3e-50
3agz_A	190	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		4e-21
2qld_A	183	Human Hsp40 Hdj1 Length = 183		5e-21
3agx_A	181	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		5e-21
2q2g_A	180	Crystal Structure Of Dimerization Domain Of Hsp40 F		4e-20
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-17
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-17
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		7e-16
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		8e-16
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		8e-16
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		9e-16
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-15
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-15
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-15
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		2e-15
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-15
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		5e-15
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		1e-14
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		3e-14
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		5e-14
1c3g_A	170	S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1		5e-14
2b26_A	173	The Crystal Structure Of The Protein Complex Of Yea		5e-14
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		6e-14
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-13
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		8e-11
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		1e-09
1xao_A	121	Hsp40-Ydj1 Dimerization Domain Length = 121		3e-08
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		3e-07
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		2e-06
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		3e-06
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-06
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		8e-05
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		3e-04
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		6e-04

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 144/237 (60%), Gaps = 4/237 (1%)
Query: 114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRI 173
           +D  H +  SLE+LY G+T KL L K ++C  C G+G K GA   C SC G G K   R 
Sbjct: 12  KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 174 IGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYF 233
           +GP M Q+ Q  C  C G G++++ KDRC SC G+K  + +K+LEV+V+ GMK+ Q+I F
Sbjct: 72  MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 234 RGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQ 293
           +GE DQ PD  PGDV+ ++ ++PH  F+R G +LV    I L  A+ G    ++H+    
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 294 LLITHPPGEVIKPEDIKGIVGEGMPIYK-NPYEKGTLYIKFDVQFPESYFNNDAKLK 349
           L +   PGEVI P   K I G+GMPI K   Y  G L IKF ++ PE++F ++  LK
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY--GNLIIKFTIKDPENHFTSEENLK 245

>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETIT 274
           K+L + V KG KE  KI F  EGDQ  +  P D++ VL+ KPH+ F+R G +++    I+
Sbjct: 52  KILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARIS 111
Query: 275 LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334
           L EALCG T  +  LD R + +     +VI+P   + + GEG+P+ K P ++G L I+F+
Sbjct: 112 LREALCGCTVNVPTLDGRTIPVVF--KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFE 169
Query: 335 VQFPE 339
           V FPE
Sbjct: 170 VIFPE 174

>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETIT 274
           K+L + V KG KE  KI F  EGDQ  +  P D++ VL+ KPH+ F+R G +++    I+
Sbjct: 45  KILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARIS 104
Query: 275 LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334
           L EALCG T  +  LD R + +     +VI+P   + + GEG+P+ K P ++G L I+F+
Sbjct: 105 LREALCGCTVNVPTLDGRTIPVVF--KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFE 162
Query: 335 VQFPE 339
           V FPE
Sbjct: 163 VIFPE 167

>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETIT 274
           K+L + V KG KE  KI F  EGDQ  +  P D++ VL+ KPH+ F+R G +++    I+
Sbjct: 43  KILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARIS 102
Query: 275 LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334
           L EALCG T  +  LD R + +     +VI+P   + + GEG+P+ K P ++G L I+F+
Sbjct: 103 LREALCGCTVNVPTLDGRTIPVVF--KDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFE 160
Query: 335 VQFPE 339
           V FPE
Sbjct: 161 VIFPE 165

>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 216 VLEVNVDKGMKEMQKIYFRGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETIT 274
           ++EV +  G K+  K+ + GEGDQ+ P   PGD++++++ K H RF R   +L+   TI 
Sbjct: 43  IVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIP 102
Query: 275 LTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD 334
           L  AL GFT  +  LD+R L I  P  E++ P+  K +  EG PI   P +KG L ++FD
Sbjct: 103 LVRALTGFTCPVTTLDNRNLQI--PIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFD 160
Query: 335 VQFPESYFNNDAKL 348
           + FP+S      KL
Sbjct: 161 ICFPKSLTPEQKKL 174

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 52/65 (80%)
Query: 3  DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
          +T  Y+VLGV   ASD E+KKAYRK+A +FHPDKNP+  ++FK+IS AYEVLSDEKKR  
Sbjct: 7  ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQI 66
Query: 63 YDRYG 67
          YD+ G
Sbjct: 67 YDQGG 71

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
          + +T  Y+VLGV  +A+ +E+KKAYRKLA ++HPDKNP  G+KFK+IS AYEVLSD KKR
Sbjct: 3  VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKR 62
Query: 61 ATYDRYGIQ 69
            YD+ G Q
Sbjct: 63 ELYDKGGEQ 71

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEKKRATYD 64
          Y+ LG+++ ASD+EIK+AYR+ A  +HPDKN E G  +KFKEI+ AY+VLSD +KR  +D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65
Query: 65 RYGIQGIK 72
          RYG +G+K
Sbjct: 66 RYGEEGLK 73

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 49/65 (75%), Gaps = 4/65 (6%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRAT 62
          YEVLGV  SAS ++IKKAYRKLA  +HPDKNP    EA  KFK +S AYEVLSD KKR+ 
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 63 YDRYG 67
          YDR G
Sbjct: 72 YDRAG 76

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 3  DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKR 60
          D   Y VLGVS++AS  +IKKAY+KLA+E+HPDKN  P A D+F +IS AYE+LS+E+KR
Sbjct: 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKR 75
Query: 61 ATYDRYG 67
            YD YG
Sbjct: 76 TNYDHYG 82

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 55/70 (78%)
Query: 3  DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
          +TKLY++LGVS SA++QE+KK YRK A ++HPDK     +KFKEIS A+E+L+D +KR  
Sbjct: 7  ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66
Query: 63 YDRYGIQGIK 72
          YD+YG++  +
Sbjct: 67 YDQYGLEAAR 76

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 2  ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEK 58
          A    YE+LGVSK+A ++EI+KAY++LA ++HPD+N    EA  KFKEI  AYEVL+D +
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 59 KRATYDRYG 67
          KRA YD+YG
Sbjct: 61 KRAAYDQYG 69

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 2  ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEK 58
          A    YE+LGVSK+A ++EI+KAY++LA ++HPD+N    EA  KFKEI  AYEVL+D +
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 59 KRATYDRYGIQGIKE-----KAGGGGADFSD 84
          KRA YD+YG    ++        GGGADFSD
Sbjct: 61 KRAAYDQYGHAAFEQGGMGGGGFGGGADFSD 91

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 8/91 (8%)
Query: 2  ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEK 58
          A    YE+LGVSK+A ++EI+KAY++LA ++HPD+N    EA  KFKEI  AYEVL+D +
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 59 KRATYDRYGIQGIKE-----KAGGGGADFSD 84
          KRA YD+YG    ++        GGGADFSD
Sbjct: 61 KRAAYDQYGHAAFEQGGMGGGGFGGGADFSD 91

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 6  LYEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKKRAT 62
          LY VLG+ K+A+  +IKK+YRKLA ++HPDK   NPEA DKFKEI+ A+ +L+D  KR  
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 63 YDRYGIQGI 71
          YD+YG  G+
Sbjct: 79 YDKYGSLGL 87

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 3   DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKK 59
           D   Y +LGVSK+AS +EI++A++KLA + HPDK   NP A   F +I+ AYEVL DE  
Sbjct: 20  DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 60  RATYDRYGIQGIKEKAGGGGADFS 83
           R  YD+YG +G+++  GG    +S
Sbjct: 80  RKKYDKYGEKGLEDNQGGQYESWS 103

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 12/85 (14%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRAT 62
          YE+L V +SAS  +IKKAYR+ A ++HPDKNP+    A  KFKE++ AYEVLSD+ KR  
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 63 YDRYGIQGI--------KEKAGGGG 79
          YDRYG +G+        + +AG GG
Sbjct: 65 YDRYGREGLTGTGTGPSRAEAGSGG 89

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 4/65 (6%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKRAT 62
          YEVL V + AS + IKKAYRKLA ++HPDKNP    EA  +FK+++ AYEVLSD KKR  
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 63 YDRYG 67
          YDRYG
Sbjct: 72 YDRYG 76

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Query: 6  LYEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKKRAT 62
           Y +LGVSK+AS +EI++A++KLA + HPDK   NP A   F +I+ AYEVL DE  R  
Sbjct: 4  FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 63 YDRYGIQGIKEKAGG 77
          YD+YG +G+++  GG
Sbjct: 64 YDKYGEKGLEDNQGG 78

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 2/63 (3%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
          YE+LGVS+ ASD+++KKAYR+LA +FHPDKN  P A + FK I  AY VLS+ +KR  YD
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69
Query: 65 RYG 67
          ++G
Sbjct: 70 QFG 72

>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 212 SVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVI-IVLEQKPHDRFQRQGINLVTT 270
           S K  +++ +  G K   KI ++ +GD  P       +  V+++K H  F+R G +L+ T
Sbjct: 33  SEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYT 92
Query: 271 ETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY 330
             ++  E+L GF+K I+ +D R L ++    + ++P       G+GMP  KNP ++G L 
Sbjct: 93  LPLSFKESLLGFSKTIQTIDGRTLPLSR--VQPVQPSQTSTYPGQGMPTPKNPSQRGNLI 150
Query: 331 IKFDVQFPESYFNNDAK 347
           +K+ V +P S   NDA+
Sbjct: 151 VKYKVDYPISL--NDAQ 165

>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 212 SVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVI-IVLEQKPHDRFQRQGINLVTT 270
           S K  +++ +  G K   KI ++ +GD  P       +  V+++K H  F+R G +L+ T
Sbjct: 33  SEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYT 92
Query: 271 ETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY 330
             ++  E+L GF+K I+ +D R L ++    + ++P       G+GMP  KNP ++G L 
Sbjct: 93  LPLSFKESLLGFSKTIQTIDGRTLPLSR--VQPVQPSQTSTYPGQGMPTPKNPSQRGNLI 150
Query: 331 IKFDVQFPESYFNNDAK 347
           +K+ V +P S   NDA+
Sbjct: 151 VKYKVDYPISL--NDAQ 165

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 3/65 (4%)
Query: 6  LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN---PEAGDKFKEISFAYEVLSDEKKRAT 62
           Y++LGV ++AS +EIKKAY +LAK++HPD N   P+A +KF +++ AYEVLSDE KR  
Sbjct: 9  YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 63 YDRYG 67
          YD YG
Sbjct: 69 YDAYG 73

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
          Y++LGV KSAS+++IKKA+ KLA ++HPDKN  P+A  KF+EI+ AYE LSD  +R  YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
Query: 65 RYGIQGIKEKAGGGG 79
            G        G  G
Sbjct: 70 TLGHSAFTSGKGQSG 84

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEKKRATYD 64
          Y ++GV  +   + IK AYR+LA+++HPD  K P+A  +FKE++ A+EVLSDE++RA YD
Sbjct: 8  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 67
Query: 65 R 65
          +
Sbjct: 68 Q 68

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPD--KNPEAGDKFKEISFAYEVLSDEKKRATYD 64
          Y +LGV  +   + IK AYR+LA+++HPD  K  +A  KFK+++ A+EVL DE++RA YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90
Query: 65 R 65
          +
Sbjct: 91 Q 91

>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain Length = 121

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319
           F+R G +LV    I L  A+ G    ++H+    L +   PGEVI P   K I G+GMPI
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 320 YKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
            K     G L IKF ++FPE++F ++  LK
Sbjct: 62  PKY-GGYGNLIIKFTIKFPENHFTSEENLK 90

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 4  TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKR 60
          T LY++LGV  +A+  +IK AY +    +HPD+N    EA ++F  IS AY VL     R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 61 ATYDR 65
            YDR
Sbjct: 77 RKYDR 81

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 7  YEVLGVSKSASD-QEIKKAYRKLAKEFHPD--KNPE----AGDKFKEISFAYEVLSDEKK 59
          Y+VL V++   D Q++ KAYR LA++ HPD  KN E    A ++F+ I+ AYE L D++ 
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 60 RATYDRY 66
          +  YD Y
Sbjct: 78 KTNYDYY 84

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDK------NPEAGDKFKEISFAYEVLSDEKKR 60
           Y++LGV ++A  QEI KAYRKLA ++HPD         +A  KF +I+ A EVLSD + R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 61  ATYD 64
             +D
Sbjct: 445 KKFD 448

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDK------NPEAGDKFKEISFAYEVLSDEKKR 60
           Y++LGV ++A  QEI KAYRKLA ++HPD         +A  KF +I+ A EVLSD + R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 61  ATYD 64
             +D
Sbjct: 445 KKFD 448

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDK---NPEAGDKFKEISFAYEVLSDEKKRATY 63
          Y +LG  + +S ++I   ++  A E HPDK   NP+A + F+++  A E+L++E+ RA Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82
Query: 64 DRY 66
          D +
Sbjct: 83 DHW 85

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAY 51
          M     Y +LG   SA+  ++K+ Y+KL   +HPDK           E   KF EI  A+
Sbjct: 7  MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66
Query: 52 EVLSDEKKRATYD 64
          ++L +E+ +  YD
Sbjct: 67 KILGNEETKREYD 79

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 6  LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAYEVLSD 56
           Y +LG   SA+  ++K+ Y+KL   +HPDK           E   KF EI  A+++L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 57 EKKRATYD 64
          E+ +  YD
Sbjct: 78 EETKKKYD 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	1e-116
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	3e-75
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	2e-67
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	8e-62
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	4e-59
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-41
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	5e-41
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-40
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	6e-40
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	1e-39
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	9e-38
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-37
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-37
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-37
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	5e-37
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-36
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	6e-36
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-35
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-35
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-35
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-34
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	1e-34
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	3e-32
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-31
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	4e-29
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	7e-29
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-29
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	9e-28
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-20
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	4e-18
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	1e-15
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-15
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-15
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-15
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-15
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-12
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	1e-11
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-11
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-10
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  337 bits (866), Expect = e-116
 Identities = 106/247 (42%), Positives = 147/247 (59%), Gaps = 2/247 (0%)

Query: 103 GGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASC 162
           G      P RG+D  H +  SLE+LY G+T KL L K ++C  C G+G K GA   C SC
Sbjct: 1   GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSC 60

Query: 163 RGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVD 222
            G G K   R +GP M Q+ Q  C  C G G++++ KDRC SC G+K  + +K+LEV+V+
Sbjct: 61  NGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVE 119

Query: 223 KGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGF 282
            GMK+ Q+I F+GE DQ PD  PGDV+ ++ ++PH  F+R G +LV    I L  A+ G 
Sbjct: 120 PGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGG 179

Query: 283 TKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYF 342
              ++H+    L +   PGEVI P   K I G+GMPI K     G L IKF ++ PE++F
Sbjct: 180 EFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHF 238

Query: 343 NNDAKLK 349
            ++  LK
Sbjct: 239 TSEENLK 245

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score =  229 bits (585), Expect = 3e-75
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 3/168 (1%)

Query: 174 IGPNMTQQIQARCSD-CQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY 232
           + P +T  ++    +   G  + M    +  +  G+   +  K+L + V KG KE  KI 
Sbjct: 1   MDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKIT 60

Query: 233 FRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDR 292
           F  EGDQ  +  P D++ VL+ KPH+ F+R G +++    I+L EALCG T  +  LD R
Sbjct: 61  FPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 120

Query: 293 QLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
            + +     +VI+P   + + GEG+P+ K P ++G L I+F+V FPE 
Sbjct: 121 TIPV--VFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPER 166

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  209 bits (534), Expect = 2e-67
 Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 189 CQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ-PDQEPGD 247
             G+ + +  K         K  + + ++EV +  G K+  K+ + GEGDQ+ P   PGD
Sbjct: 18  YLGKRKKI--KVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGD 75

Query: 248 VIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPE 307
           ++++++ K H RF R   +L+   TI L  AL GFT  +  LD+R L I  P  E++ P+
Sbjct: 76  LVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQI--PIKEIVNPK 133

Query: 308 DIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
             K +  EGMPI   P +KG L ++FD+ FP+S
Sbjct: 134 TRKIVPNEGMPIKNQPGQKGDLILEFDICFPKS 166

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  199 bits (509), Expect = 8e-62
 Identities = 78/350 (22%), Positives = 125/350 (35%), Gaps = 95/350 (27%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYD 64
           Y +LGV  +   + IK AYR+LA+++HPD +   +A  KFK+++ A+EVL DE++RA YD
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

Query: 65  RYGIQGIKEKAGGG---------GADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGED 115
           +          G             DF  D+ S +FG +            R    RG D
Sbjct: 91  QLWQHRNDPGFGRQRQTHEQSYSQQDFD-DIFSSMFGQQ-------AHQRRRQHAARGHD 142

Query: 116 TVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIG 175
               + V LE+    +T  +                                        
Sbjct: 143 LEIEVAVFLEETLAEQTRTISY-------------------------------------- 164

Query: 176 PNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRG 235
                       +  G  E    K                 L V +  G+ + Q+I  +G
Sbjct: 165 -------NLPVYNVFGMIESETPK----------------TLNVKIPAGVVDGQRIRLKG 201

Query: 236 EGDQQPD-QEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQL 294
           +G    +    GD+ +V+   PH  F   G NL     +   EA  G    +  L +  +
Sbjct: 202 QGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-I 260

Query: 295 LITHPP----GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPES 340
           L+T PP    G+ ++   IK   G+G+    +    G L+    +  P  
Sbjct: 261 LLTVPPGSQAGQRLR---IK---GKGLV---SKTHTGDLFAVIKIVMPTK 301

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  187 bits (477), Expect = 4e-59
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 204 SCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDRFQR 262
              G    S K  +++ +  G K   KI ++ +GD  P       +  V+++K H  F+R
Sbjct: 25  GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84

Query: 263 QGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKN 322
            G +L+ T  ++  E+L GF+K I+ +D R L ++    + ++P       G+GMP  KN
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV--QPVQPSQTSTYPGQGMPTPKN 142

Query: 323 PYEKGTLYIKFDVQFPES 340
           P ++G L +K+ V +P S
Sbjct: 143 PSQRGNLIVKYKVDYPIS 160

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  142 bits (360), Expect = 3e-41
 Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 21/143 (14%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
           Y +LGVSK+AS +EI++A++KLA + HPDKNP    A   F +I+ AYEVL DE  R  Y
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

Query: 64  DRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVS 123
           D+YG +G+++  GG    +S       +              +  R              
Sbjct: 65  DKYGEKGLEDNQGGQYESWSY------YRYDFGIYDDDPEIITLERR------------E 106

Query: 124 LEDLYNGKTTKLQLTKSVICSTC 146
            +   N          S  CS C
Sbjct: 107 FDAAVNSGELWFVNFYSPGCSHC 129

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  137 bits (348), Expect = 5e-41
 Identities = 39/80 (48%), Positives = 57/80 (71%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
          + +TKLY++LGVS SA++QE+KK YRK A ++HPDK     +KFKEIS A+E+L+D +KR
Sbjct: 5  VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKR 64

Query: 61 ATYDRYGIQGIKEKAGGGGA 80
            YD+YG++  +      G 
Sbjct: 65 EIYDQYGLEAARSGGPSFGP 84

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  136 bits (345), Expect = 2e-40
 Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
            +   LY VLG+ K+A+  +IKK+YRKLA ++HPDKNP   EA DKFKEI+ A+ +L+D 
Sbjct: 14  TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDA 73

Query: 58  KKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGG 93
            KR  YD+YG  G+      G  + +   +S    G
Sbjct: 74  TKRNIYDKYGSLGLYVAEQFGEENVNTYFVSGPSSG 109

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  134 bits (340), Expect = 6e-40
 Identities = 42/67 (62%), Positives = 53/67 (79%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
          + +T  Y+VLGV   ASD E+KKAYRK+A +FHPDKNP+  ++FK+IS AYEVLSDEKKR
Sbjct: 5  VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64

Query: 61 ATYDRYG 67
            YD+ G
Sbjct: 65 QIYDQGG 71

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score =  135 bits (342), Expect = 1e-39
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319
           F+R G +LV    I L  A+ G    ++H+    L +   PGEVI P   K I G+GMPI
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 320 YKNPYEKGTLYIKFDVQFPESYFNNDAKLK 349
            K     G L IKF ++FPE++F ++  LK
Sbjct: 62  PKYG-GYGNLIIKFTIKFPENHFTSEENLK 90

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  130 bits (328), Expect = 9e-38
 Identities = 51/98 (52%), Positives = 68/98 (69%), Gaps = 11/98 (11%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
           YE+LGVSK+A ++EI+KAY++LA ++HPD+N    EA  KFKEI  AYEVL+D +KRA Y
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 64  DRYGIQGIKEKAGGGG-----ADFSD---DLISQLFGG 93
           D+YG    ++   GGG     ADFSD   D+   +FGG
Sbjct: 66  DQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGG 103

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  131 bits (330), Expect = 1e-37
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAY 51
           M     Y +LG   SA+  ++K+ Y+KL   +HPDK           E   KF EI  A+
Sbjct: 7   MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66

Query: 52  EVLSDEKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGG 104
           ++L +E+ +  YD    +      G   A    + +S   G   F +    GG
Sbjct: 67  KILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGG 119

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  128 bits (324), Expect = 2e-37
 Identities = 46/85 (54%), Positives = 52/85 (61%), Gaps = 4/85 (4%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSD 56
                YEVLGV  SAS ++IKKAYRKLA  +HPDKNP    EA  KFK +S AYEVLSD
Sbjct: 6  SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65

Query: 57 EKKRATYDRYGIQGIKEKAGGGGAD 81
           KKR+ YDR G    +   G  G  
Sbjct: 66 SKKRSLYDRAGCDSWRAGGGASGPS 90

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  128 bits (324), Expect = 3e-37
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
           + T LY++LGV  +A+  +IK AY +    +HPD+N    EA ++F  IS AY VL   
Sbjct: 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSA 73

Query: 58 KKRATYDRYGIQGIKEKAGGGG 79
            R  YDR  +     +  G G
Sbjct: 74 TLRRKYDRGLLSDEDLRGPGSG 95

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  127 bits (322), Expect = 5e-37
 Identities = 49/115 (42%), Positives = 60/115 (52%), Gaps = 20/115 (17%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSD 56
           MA    YE+L V +SAS  +IKKAYR+ A ++HPDKNP     A  KFKE++ AYEVLSD
Sbjct: 1   MAS--YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSD 58

Query: 57  EKKRATYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGGHSRGRPH 111
           + KR  YDRYG +G+     G                   G GGP   H     H
Sbjct: 59  KHKREIYDRYGREGLTGTGTGPSRAE-------------AGSGGPGLEHH-HHHH 99

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  126 bits (319), Expect = 1e-36
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEK 58
           +    Y++LGV KSAS+++IKKA+ KLA ++HPDKN   +A  KF+EI+ AYE LSD  
Sbjct: 4  GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDAN 63

Query: 59 KRATYDRYGIQGIKEKAGGGG 79
          +R  YD  G        G  G
Sbjct: 64 RRKEYDTLGHSAFTSGKGQSG 84

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  124 bits (313), Expect = 6e-36
 Identities = 40/74 (54%), Positives = 55/74 (74%), Gaps = 5/74 (6%)

Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYD 64
          Y+ LG+++ ASD+EIK+AYR+ A  +HPDKN    A +KFKEI+ AY+VLSD +KR  +D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

Query: 65 RYGIQGIKEKAGGG 78
          RYG +G+K   G G
Sbjct: 66 RYGEEGLK---GSG 76

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  123 bits (311), Expect = 2e-35
 Identities = 41/76 (53%), Positives = 49/76 (64%), Gaps = 4/76 (5%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSD 56
                YEVL V + AS + IKKAYRKLA ++HPDKNP    EA  +FK+++ AYEVLSD
Sbjct: 6  SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65

Query: 57 EKKRATYDRYGIQGIK 72
           KKR  YDRYG     
Sbjct: 66 AKKRDIYDRYGSGPSS 81

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  124 bits (313), Expect = 2e-35
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 14/101 (13%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATY 63
           Y +LG  + +S ++I   ++  A E HPDK+P   +A + F+++  A E+L++E+ RA Y
Sbjct: 23  YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82

Query: 64  DRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFGMGGPFGG 104
           D +    +           +D               GP  G
Sbjct: 83  DHWRRSQM-SMPFQQWEALNDS----------VKTSGPSSG 112

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  121 bits (307), Expect = 4e-35
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEK 58
           +    YE+LGVS+ ASD+++KKAYR+LA +FHPDKN    A + FK I  AY VLS+ +
Sbjct: 4  GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63

Query: 59 KRATYDRYGIQGIK 72
          KR  YD++G     
Sbjct: 64 KRKQYDQFGSGPSS 77

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  121 bits (305), Expect = 1e-34
 Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 2/68 (2%)

Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG--DKFKEISFAYEVLSDEKKRATYD 64
          Y VLGVS++AS  +IKKAY+KLA+E+HPDKN + G  D+F +IS AYE+LS+E+KR  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

Query: 65 RYGIQGIK 72
           YG     
Sbjct: 80 HYGSGPSS 87

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  120 bits (304), Expect = 1e-34
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
           +    Y++LGV ++AS +EIKKAY +LAK++HPD N    +A +KF +++ AYEVLSDE
Sbjct: 4  GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63

Query: 58 KKRATYDRYG 67
           KR  YD YG
Sbjct: 64 VKRKQYDAYG 73

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  115 bits (289), Expect = 3e-32
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAY 51
                Y +LG   SA+  ++K+ Y+KL   +HPDK           E   KF EI  A+
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 52 EVLSDEKKRATYDRYG 67
          ++L +E+ +  YD   
Sbjct: 73 KILGNEETKKKYDLQR 88

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  113 bits (285), Expect = 2e-31
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 1  MADTKLYEVLGVSKSASDQ-EIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEV 53
                Y+VL V++   D+ ++ KAYR LA++ HPD+         A ++F+ I+ AYE 
Sbjct: 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYET 71

Query: 54 LSDEKKRATYDRYG 67
          L D++ +  YD Y 
Sbjct: 72 LKDDEAKTNYDYYL 85

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score =  107 bits (269), Expect = 4e-29
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 4   TKLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRA 61
            +L ++LG+ +SA  +   ++KAY K  KEFHPDK  +  +K K+++  Y+ + D  K A
Sbjct: 8   LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVKYA 66

Query: 62  TYDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLFG 97
               +G      +    G D  +   +      LF 
Sbjct: 67  HQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFC 102

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score =  106 bits (266), Expect = 7e-29
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 1  MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEK 58
                +++LGV   AS  E+ KAYRKLA   HPDK   P + D FK +  A   L    
Sbjct: 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNI 83

Query: 59 KRATYD 64
          K     
Sbjct: 84 KSGPSS 89

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  116 bits (291), Expect = 8e-29
 Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 15/170 (8%)

Query: 1   MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDE 57
             D   Y +LGVSK+AS +EI++A++KLA + HPDKNP    A   F +I+ AYEVL DE
Sbjct: 18  RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDE 77

Query: 58  KKRATYDRYGIQGIKEKAGGGGADF-----------SDDLISQLFGGRLFGMGGPFGGHS 106
             R  YD+YG +G+++  GG    +            D  I  L                
Sbjct: 78  DLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWF 137

Query: 107 RGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGAT 156
                 G    H L  +  +        L++   V C          G  
Sbjct: 138 VNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGA-VNCGDDRMLCRMKGVN 186

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  106 bits (265), Expect = 9e-28
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 5  KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
          +L ++LG+ +SA  +   ++KAY K  KEFHPDK  +  +K K+++  Y+ + D  K A 
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVKYAH 70

Query: 63 YDRYGIQGIKEK--AGGGGADFSDDLISQ 89
             +G      +  A             Q
Sbjct: 71 QPDFGGFWDATEVFASSLNPGVDAIYCKQ 99

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  102 bits (255), Expect = 2e-27
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 5  KLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP----EAGDKFKEISFAYEVLSDEKKR 60
          ++  V+  +    + E KK  R+L  ++HPDKNP     A + FK +      L    K+
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQ 73

Query: 61 ATYDRYGIQGIK 72
          A  D+   +  +
Sbjct: 74 AFLDQNADRASR 85

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 6/65 (9%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDEKKR 60
           Y++LGV ++A  QEI KAYRKLA ++HPD         +A  KF +I+ A EVLSD + R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 61  ATYDR 65
             +D 
Sbjct: 445 KKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 80.0 bits (197), Expect = 4e-18
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 7  YEVLGVSKSA-------SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKK 59
          YE+   +              ++K YR+L  + HPD   +  ++   ++ AY  L D  +
Sbjct: 14 YELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLR 73

Query: 60 RATYDRYGIQGIKEKAGGGGADFS 83
          R+ Y    ++ I         + +
Sbjct: 74 RSQYMLKLLRNIDLTQEQTSNEVT 97

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 14/112 (12%)

Query: 113 GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHH 171
           G      ++++      G   +  +     C  CNGKG++ G     C  C G G     
Sbjct: 1   GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG-MET- 58

Query: 172 RIIGPNMTQ---QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVN 220
                 +      +++ C  C G G ++     C  C G      KK    +
Sbjct: 59  ------INTGPFVMRSTCRRCGGRGSII--ISPCVVCRGAGQAKQKKRSGPS 102

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 72.6 bits (177), Expect = 2e-15
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDEKKR 60
           ++ +G++   + +++KK YRK     HPDK         A   F E++ A+    ++ ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179

Query: 61  ATY 63
             Y
Sbjct: 180 PLY 182

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 71.9 bits (176), Expect = 2e-15
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 7  YEVLGVSKSAS--DQEIKKAYRKLAKEFHPDKNP--------EAGDKFKEISFAYEVLSD 56
          + + G+        Q +   ++ L +++HPDK           A  +   I+ A++ L  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 57 EKKRATYDRY 66
             RA Y   
Sbjct: 64 PLMRAEYLLS 73

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 69.2 bits (169), Expect = 2e-15
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 5  KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGD--KFKEISFAYEVLSDEKKR 60
          +L E+L + +        +++AY++ +   HPDK    G     +E++  +     E   
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYN 68

Query: 61 ATYDRYG 67
             +  G
Sbjct: 69 LRMNLGG 75

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 65.5 bits (159), Expect = 1e-12
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 7   YEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNP--------EAGDKFKEISFAYEVLSD 56
           + ++  ++S      +++  Y++L +  HPD            +      ++ AY+ L  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 57  EKKRATYDRYGIQGIKEKAGGGGADFSDDLISQL 90
              R  Y    + GI+             LI  +
Sbjct: 106 PLSRGLYL-LKLHGIEIPERTDYEMDRQFLIEIM 138

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 14/83 (16%)

Query: 130 GKTTKLQLTKSVICSTCNGKGSKSGATF-TCASCRGCGFKIHHRIIGPNMTQ---QIQAR 185
           G T ++++     C  C+G G+K G    TC +C G G ++        M Q    +Q  
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG-QVQ-------MRQGFFAVQQT 52

Query: 186 CSDCQGEGEVMNEKDRCGSCAGR 208
           C  CQG G ++  KD C  C G 
Sbjct: 53  CPHCQGRGTLI--KDPCNKCHGH 73

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 7  YEVLGVSKSA-SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR 60
           ++L ++++  + +++K+ +RK+    HPDK         +I+ A + L      
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP-FLATKINEAKDFLEKRGIS 70

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP------EAGDKFKEISFAYEVLSDE 57
          ++ +G++   + +++KK YRK     HP K         A   F E++ A+    ++
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 7   YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----------AGDKFKEISFAYEVLSD 56
           ++ + +        ++K+Y++     HPDK  +          A   F+ +  A++  + 
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102

Query: 57  E 57
            
Sbjct: 103 L 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 56/420 (13%), Positives = 107/420 (25%), Gaps = 147/420 (35%)

Query: 20  EIKKAYRKLAKEFHPD--KNPEAGDKFKEIS-FAYEVLSDE--------KKRATYDRYGI 68
           E +  Y+ +   F      N +     K++      +LS E        K   +      
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFD----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 69  QGIKEKAGGGGADFSDDLISQLFGGRLFGMG-------GPFGG-----HSRGRPHRGEDT 116
             +  K       F ++++   +    F M         P          R R +     
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 117 VHPLKVSLEDLYNGKTTKLQLTKSVICSTCNG-KGS-KSGATFTCASCRGCGFKIHHRII 174
                VS    Y      L   +       +G  GS K+        C    +K+     
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDVCL--SYKVQ---- 177

Query: 175 GPNMTQQIQARCSDCQGEGEV--MNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIY 232
                         C+ + ++  +N      +C   +T+             ++ +QK+ 
Sbjct: 178 --------------CKMDFKIFWLN----LKNCNSPETV-------------LEMLQKLL 206

Query: 233 FR--GEGDQQPDQEPGDVIIVLEQKPHDR---FQRQGIN--------------------- 266
           ++       + D      + +   +   R     +   N                     
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 267 --LVTTETITLTEALCGFTKVIKHLDDRQLLITHP-----------------PGEVIK-- 305
             L+TT    +T+ L   T     LD   + +T                   P EV+   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 306 PEDIKGIVGEGMPIYKN-------------------------PYEKGTLYIKFDVQFPES 340
           P  +  I+ E +                              P E   ++ +  V FP S
Sbjct: 327 PRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPS 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.91
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.9
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.86
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.86
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.86
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.85
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.84
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.84
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.84
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.84
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.83
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.83
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.82
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.82
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.82
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.81
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.79
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.77
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.74
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.73
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.73
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.72
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.72
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.7
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.64
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.64
2guz_A	71	Mitochondrial import inner membrane translocase su	99.64
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.63
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.63
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.63
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.61
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.61
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.6
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.49
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.3
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.03
2guz_B	65	Mitochondrial import inner membrane translocase su	98.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.94
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	98.88
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.69
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.68
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.62
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.56
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.75
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.65
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.64
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	97.5
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.04
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.99
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.97

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=2.3e-63  Score=454.29  Aligned_cols=239  Identities=44%  Similarity=0.816  Sum_probs=219.5

Q ss_pred             CCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCC
Q psy4972         109 RPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSD  188 (349)
Q Consensus       109 ~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~  188 (349)
                      +++++.|+.+.|.|||+|||+|+++++.+.+.+.|++|+|+|+.+++..+|+.|+|+|++...+++++ |+++.+.+|+.
T Consensus         7 ~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~   85 (248)
T 1nlt_A            7 GPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV   85 (248)
T ss_dssp             -CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred             CCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence            34678999999999999999999999999999999999999999887899999999999998899998 88889999999


Q ss_pred             CCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeE
Q psy4972         189 CQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLV  268 (349)
Q Consensus       189 C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~  268 (349)
                      |+|+|+++...++|+.|+|.+++.+.+.++|+||||+++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+||+
T Consensus        86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~  165 (248)
T 1nlt_A           86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLV  165 (248)
T ss_dssp             CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEE
T ss_pred             CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEE
Confidence            99999999889999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             EEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         269 TTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       269 ~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      ++++|+|+|||+|++++|+||||+.+.|+||+|+++++|++++|+|+|||..+++ .+|||||+|+|+||++.|||++|+
T Consensus       166 ~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q~  244 (248)
T 1nlt_A          166 YEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEENL  244 (248)
T ss_dssp             EEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC---------
T ss_pred             EEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHHH
Confidence            9999999999999999999999988999999999999999999999999987665 689999999999999989999986


Q ss_pred             C
Q psy4972         349 K  349 (349)
Q Consensus       349 ~  349 (349)
                      +
T Consensus       245 ~  245 (248)
T 1nlt_A          245 K  245 (248)
T ss_dssp             -
T ss_pred             H
Confidence            4

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=2.7e-64  Score=476.94  Aligned_cols=272  Identities=28%  Similarity=0.433  Sum_probs=150.6

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccc----
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK----   74 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~----   74 (349)
                      |+.+|||++|||+++|+.+|||+|||+||++||||+|+  .++++|++|++||++|+||.+|+.||+|+..+...+    
T Consensus        25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~  104 (329)
T 3lz8_A           25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQ  104 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccc
Confidence            56689999999999999999999999999999999985  468999999999999999999999999954321111    


Q ss_pred             cC--CCCC--CChhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCC
Q psy4972          75 AG--GGGA--DFSDDLISQLFGGRLFGMGGPFGGHSRGRPHRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKG  150 (349)
Q Consensus        75 ~~--~~g~--~~~~d~f~~~fg~~~~~~g~~~~~~~~~~~~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G  150 (349)
                      ..  +++|  .++.|+|++|||++.    .  + ++.+++.++.|+.+.|.|||+|+|.|+++++.+.+.+.|    +  
T Consensus       105 ~~~~~~~f~~~~f~diF~~~Fg~~g----~--~-~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g--  171 (329)
T 3lz8_A          105 RQTHEQSYSQQDFDDIFSSMFGQQA----H--Q-RRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----V--  171 (329)
T ss_dssp             ---------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----S--
T ss_pred             cccccCCcCCCchhhhhHhhhcCcC----C--C-CCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----C--
Confidence            00  1122  235688888886421    1  0 112235679999999999999999999999999876632    1  


Q ss_pred             CCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcE
Q psy4972         151 SKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQK  230 (349)
Q Consensus       151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~  230 (349)
                                    .|.                                         ..+...+.++|+||||+++|++
T Consensus       172 --------------~G~-----------------------------------------v~~~~~~~l~V~IP~Gv~~G~~  196 (329)
T 3lz8_A          172 --------------FGM-----------------------------------------IESETPKTLNVKIPAGVVDGQR  196 (329)
T ss_dssp             --------------CC------------------------------------------CCEEEEEEEEEEECTTCCTTCE
T ss_pred             --------------CeE-----------------------------------------EEEecceEEEEeCCCCCCCCCE
Confidence                          111                                         1123356899999999999999


Q ss_pred             EEEcCCCCCCC-CCCCccEEEEEEEccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcE
Q psy4972         231 IYFRGEGDQQP-DQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI  309 (349)
Q Consensus       231 i~~~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~  309 (349)
                      |+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||+++++|++++|++|++++|+||||+ +.|+||++  +++|++
T Consensus       197 Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~g--t~~g~~  273 (329)
T 3lz8_A          197 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPG--SQAGQR  273 (329)
T ss_dssp             EEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTT--CCTTCE
T ss_pred             EEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCC--CCCCCE
Confidence            99999999985 578999999999999999999999999999999999999999999999997 78999999  799999


Q ss_pred             EEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         310 KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       310 ~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      +||+|+|||..   ..+|||||+|+|.||++  ||++|+
T Consensus       274 ~rl~G~GmP~~---~~rGDL~v~~~V~~P~~--l~~~q~  307 (329)
T 3lz8_A          274 LRIKGKGLVSK---THTGDLFAVIKIVMPTK--PDEKAR  307 (329)
T ss_dssp             EEETTCSCBCS---SCBCCEEEEEEECCCSS--CCHHHH
T ss_pred             EEEcCCCCCCC---CCCCCEEEEEEEECCCC--CCHHHH
Confidence            99999999975   36899999999999999  999875

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=6.1e-45  Score=317.38  Aligned_cols=171  Identities=36%  Similarity=0.630  Sum_probs=152.0

Q ss_pred             CCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCc
Q psy4972         113 GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGE  192 (349)
Q Consensus       113 ~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~  192 (349)
                      ++|+.+.|+|||+|||+|+++++.+.+.                                                    
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~----------------------------------------------------   29 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHK----------------------------------------------------   29 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEE----------------------------------------------------
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecc----------------------------------------------------
Confidence            3688999999999999999999987631                                                    


Q ss_pred             ceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEEEee
Q psy4972         193 GEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVTTET  272 (349)
Q Consensus       193 G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~  272 (349)
                               |..|+|.+++.+.+.++|+||||+++|++|+|+|+|++++++.+|||||+|++++|+.|+|+|+||+++++
T Consensus        30 ---------c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~  100 (181)
T 3agx_A           30 ---------RLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPAR  100 (181)
T ss_dssp             ---------EECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred             ---------cCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEEEEE
Confidence                     33333444456788999999999999999999999999988999999999999999999999999999999


Q ss_pred             cCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         273 ITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       273 I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      ||+++|++|++++|+||||+.+.|++|++  +++|+++||+|+|||..++++.+|||||+|+|.||++  ||++|+
T Consensus       101 Isl~eAllG~~i~v~tldG~~~~i~i~~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~--ls~~q~  172 (181)
T 3agx_A          101 ISLREALCGCTVNVPTLDGRTIPVVFKDV--IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPER--IPQTSR  172 (181)
T ss_dssp             EEHHHHHHCEEEEEECTTSCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSC--CCHHHH
T ss_pred             cCHHHHhCCCEEEeECCCCCEEEEECCCc--cCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCC--CCHHHH
Confidence            99999999999999999998899999887  8999999999999998765567899999999999999  999885

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.9e-43  Score=305.85  Aligned_cols=170  Identities=36%  Similarity=0.616  Sum_probs=155.8

Q ss_pred             CCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCC
Q psy4972         112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQG  191 (349)
Q Consensus       112 ~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G  191 (349)
                      ++.|+.+.|.|||+|||+|+++++.+.+.+.|++                                              
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------   35 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------   35 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence            3679999999999999999999999999888741                                              


Q ss_pred             cceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCC-CCCCCCccEEEEEEEccCCccccccceeEEE
Q psy4972         192 EGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQ-QPDQEPGDVIIVLEQKPHDRFQRQGINLVTT  270 (349)
Q Consensus       192 ~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~-~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~  270 (349)
                                       +++.+.+.++|+||||+++|++|+|+|+|++ .+++.+|||||+|++++|+.|+|+|+||+++
T Consensus        36 -----------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~   98 (180)
T 2q2g_A           36 -----------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMK   98 (180)
T ss_dssp             -----------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEE
T ss_pred             -----------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEE
Confidence                             1234568899999999999999999999999 5788999999999999999999999999999


Q ss_pred             eecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCcccc
Q psy4972         271 ETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL  348 (349)
Q Consensus       271 l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~  348 (349)
                      ++||+++|++|++++|+||||+.+.|++|++  +++|+++||+|+|||..++++.+|||||+|+|.||++  ||++|+
T Consensus        99 ~~Isl~eAllG~~i~v~tldG~~v~i~ip~~--t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~--Ls~~q~  172 (180)
T 2q2g_A           99 VTIPLVRALTGFTCPVTTLDNRNLQIPIKEI--VNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKS--LTPEQK  172 (180)
T ss_dssp             EEEEHHHHHHCEEEEEECTTCCEEEEEECSC--CCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSC--CCHHHH
T ss_pred             EEcCHHHHhCCCEEEeeCCCCCEEEEECCCc--cCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCC--CCHHHH
Confidence            9999999999999999999998899999988  8999999999999998766567899999999999999  999885

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=3.9e-41  Score=290.62  Aligned_cols=166  Identities=31%  Similarity=0.544  Sum_probs=150.2

Q ss_pred             CCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcc
Q psy4972         114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEG  193 (349)
Q Consensus       114 ~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G  193 (349)
                      +|+.+.|.|||+|||+|+++++.+.+..    +                                               
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-----------------------------------------------   29 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-----------------------------------------------   29 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-----------------------------------------------
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-----------------------------------------------
Confidence            3788999999999999999999998651    0                                               


Q ss_pred             eEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCC-CCCCCccEEEEEEEccCCccccccceeEEEee
Q psy4972         194 EVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQ-PDQEPGDVIIVLEQKPHDRFQRQGINLVTTET  272 (349)
Q Consensus       194 ~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~-~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~l~  272 (349)
                                    .|.+ +.+.++|+||||+++|++|+|+|+|+++ +++.+|||||+|++++|+.|+|+|+||+++++
T Consensus        30 --------------~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~   94 (170)
T 1c3g_A           30 --------------HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP   94 (170)
T ss_dssp             --------------TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEEC
T ss_pred             --------------CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEE
Confidence                          1123 4678999999999999999999999964 67889999999999999999999999999999


Q ss_pred             cCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcCCCCCCCccccC
Q psy4972         273 ITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK  349 (349)
Q Consensus       273 I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P~~~~ls~~q~~  349 (349)
                      |++++|++|++++|+||||+.+.|++|++  +++|+++||+|+|||..++++.+|||||+|+|.||++  ||++|++
T Consensus        95 Isl~eAllG~~~~v~tldG~~~~i~i~~~--t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~--Ls~~q~~  167 (170)
T 1c3g_A           95 LSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS--LNDAQKR  167 (170)
T ss_dssp             CBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS--CCTTHHH
T ss_pred             cCHHHHhCCCeEEeeCCCCCEEEEECCCc--cCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCC--CCHHHHH
Confidence            99999999999999999998889999988  8999999999999998766657899999999999999  9999853

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.5e-24  Score=176.30  Aligned_cols=89  Identities=39%  Similarity=0.594  Sum_probs=79.9

Q ss_pred             ccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcC
Q psy4972         259 RFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP  338 (349)
Q Consensus       259 ~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P  338 (349)
                      .|+|+|+||+++++|+|++|++|++++|+||||+++.|+||+|+++++|+++||+|+|||..+++ .+|||||+|+|.||
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P   79 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP   79 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence            48999999999999999999999999999999998999999999999999999999999987665 68999999999999


Q ss_pred             CCCCCCcccc
Q psy4972         339 ESYFNNDAKL  348 (349)
Q Consensus       339 ~~~~ls~~q~  348 (349)
                      ++.|||++|+
T Consensus        80 ~~~~ls~~q~   89 (121)
T 1xao_A           80 ENHFTSEENL   89 (121)
T ss_dssp             CTTCSCHHHH
T ss_pred             CCCCCCHHHH
Confidence            9989998875

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.90  E-value=4.4e-24  Score=170.21  Aligned_cols=86  Identities=23%  Similarity=0.374  Sum_probs=79.7

Q ss_pred             ccCCccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEE
Q psy4972         255 KPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFD  334 (349)
Q Consensus       255 ~~~~~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~  334 (349)
                      ++|+.|+|+|+||+++++|+|.||++|++++|+|+|| .+.|+||+|  +++|+++||+|+|||.. +  .+|||||+|+
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG-~~~v~ip~g--~~~G~~~rl~G~G~p~~-~--~~GDL~v~~~   75 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILLTVPPG--SQAGQRLRIKGKGLVSK-T--HTGDLFAVIK   75 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSS-CEEEEECTT--CCTTCEEEETTCSCBCS-S--CBCCEEEEEE
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCC-CEEEeeCCC--cCcCeEEEECCccCCCC-C--CCcCEEEEEE
Confidence            6899999999999999999999999999999999999 589999999  89999999999999973 2  6999999999


Q ss_pred             EEcCCCCCCCcccc
Q psy4972         335 VQFPESYFNNDAKL  348 (349)
Q Consensus       335 v~~P~~~~ls~~q~  348 (349)
                      |.||++  ||++|+
T Consensus        76 V~~P~~--Ls~~q~   87 (109)
T 3i38_A           76 IVMPTK--PDEKAR   87 (109)
T ss_dssp             ECCCSS--CCHHHH
T ss_pred             EECCCC--CCHHHH
Confidence            999999  999885

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.86  E-value=2.6e-22  Score=148.73  Aligned_cols=68  Identities=62%  Similarity=0.968  Sum_probs=63.7

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQ   69 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~   69 (349)
                      ...+||+||||+++|+.++||+|||+|+++||||+++++.++|++|++||++|+||.+|+.||++|++
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            45799999999999999999999999999999999998889999999999999999999999999863

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.2e-22  Score=155.86  Aligned_cols=72  Identities=53%  Similarity=0.894  Sum_probs=68.4

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE   73 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   73 (349)
                      ...|||+||||+++|+.++||+|||+|+++||||+++.+.++|++|++||++|+||.+|+.||++|++++..
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            568999999999999999999999999999999999988899999999999999999999999999887764

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.86  E-value=1.2e-22  Score=160.61  Aligned_cols=91  Identities=49%  Similarity=0.852  Sum_probs=67.4

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccccCC-C
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEKAGG-G   78 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~~~~-~   78 (349)
                      ..|||+||||+++|+.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||++|++++..++.+ +
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~   81 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG   81 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence            479999999999999999999999999999999985   467899999999999999999999999999887653221 1


Q ss_pred             CCC---ChhhHHHhhhcC
Q psy4972          79 GAD---FSDDLISQLFGG   93 (349)
Q Consensus        79 g~~---~~~d~f~~~fg~   93 (349)
                      ++.   ++.++|+.+|+.
T Consensus        82 ~~~~~~~~~~~f~~~f~~   99 (103)
T 1bq0_A           82 GFGGGADFSDIFGDVFGD   99 (103)
T ss_dssp             ------------------
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            111   234667777653

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.85  E-value=6.4e-22  Score=148.13  Aligned_cols=70  Identities=54%  Similarity=0.932  Sum_probs=65.9

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE   73 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   73 (349)
                      .|||+||||+++|+.++||+|||+|+++||||+++  .+.++|+.|++||++|+||.+|+.||++|.+++.+
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   74 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence            69999999999999999999999999999999985  57899999999999999999999999999887653

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.4e-21  Score=150.05  Aligned_cols=73  Identities=48%  Similarity=0.794  Sum_probs=67.2

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK   74 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~   74 (349)
                      ...|||+||||+++|+.++||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||++|..++..+
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   79 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG   79 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence            4679999999999999999999999999999999986  467899999999999999999999999998776543

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=2.7e-21  Score=145.48  Aligned_cols=69  Identities=52%  Similarity=0.853  Sum_probs=64.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQG   70 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   70 (349)
                      ...|||+||||+++|+.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||++|..+
T Consensus         5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            4679999999999999999999999999999999985   46899999999999999999999999998754

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=2.1e-21  Score=147.14  Aligned_cols=70  Identities=59%  Similarity=0.878  Sum_probs=64.8

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGI   71 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~   71 (349)
                      ...|||+||||+++|+.++||+|||+|+++||||+++.    +.++|++|++||++|+||.+|+.||++|+.++
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            35799999999999999999999999999999999974    46799999999999999999999999998654

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.2e-21  Score=155.23  Aligned_cols=102  Identities=23%  Similarity=0.534  Sum_probs=89.8

Q ss_pred             CCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCC
Q psy4972         113 GEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQG  191 (349)
Q Consensus       113 ~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G  191 (349)
                      +.|+.++|.|||+|||+|.++++.+.+.+.|+.|+|+|+.+++ ..+|+.|+|+|++...+  +  ++ +.+.+|+.|+|
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G--~~-~~~~~C~~C~G   75 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--G--PF-VMRSTCRRCGG   75 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--T--TE-EEEEECSSSSS
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--C--CE-EEEEECCcCCC
Confidence            3578889999999999999999999999999999999998875 68999999999876543  3  33 46789999999


Q ss_pred             cceEEcCCCCCCcCCCccEEEeeEEEEEEe
Q psy4972         192 EGEVMNEKDRCGSCAGRKTLSVKKVLEVNV  221 (349)
Q Consensus       192 ~G~~~~~~~~C~~C~g~g~~~~~~~~~v~I  221 (349)
                      .|+++  .++|+.|+|.|++.+.+.|+|++
T Consensus        76 ~G~~i--~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           76 RGSII--ISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SSEEC--SSCCSSSSSCSEECCCCSSCCSC
T ss_pred             cceEC--CCcCCCCCCeeEEEEEEEEEEEc
Confidence            99999  78999999999999888877764

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.84  E-value=1.9e-21  Score=152.30  Aligned_cols=71  Identities=56%  Similarity=0.921  Sum_probs=63.6

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE   73 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   73 (349)
                      ++|||+||||+++|+.++||+|||+|+++||||+++.    +.++|++|++||++|+||.+|+.||++|.+++..
T Consensus         1 M~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~   75 (99)
T 2lgw_A            1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG   75 (99)
T ss_dssp             CCCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            4799999999999999999999999999999999974    5789999999999999999999999999877653

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.3e-21  Score=145.43  Aligned_cols=69  Identities=52%  Similarity=0.863  Sum_probs=64.8

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQG   70 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   70 (349)
                      ...|||+||||+++|+.++||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||++|..+
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4689999999999999999999999999999999985  57899999999999999999999999998764

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=3.1e-21  Score=149.39  Aligned_cols=72  Identities=60%  Similarity=0.863  Sum_probs=66.3

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE   73 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   73 (349)
                      ...|||+||||+++|+.++||+|||+|+++||||+++.    +.++|++|++||++|+||.+|+.||++|..++..
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   82 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA   82 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            35799999999999999999999999999999999864    5789999999999999999999999999877654

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=7.1e-21  Score=146.08  Aligned_cols=69  Identities=58%  Similarity=0.902  Sum_probs=64.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQG   70 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   70 (349)
                      ...|||+||||+++|+.++||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||++|+..
T Consensus        15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            3579999999999999999999999999999999985  57899999999999999999999999998753

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=9.5e-21  Score=148.59  Aligned_cols=67  Identities=40%  Similarity=0.640  Sum_probs=62.2

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---AGDKFKEISFAYEVLSDEKKRATYDRYG   67 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   67 (349)
                      |...+||+||||+++|+.++||+|||+|+++||||+++.   +.++|++|++||++|+||.+|+.||++.
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            456899999999999999999999999999999999863   6889999999999999999999999853

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=7.4e-21  Score=152.56  Aligned_cols=70  Identities=31%  Similarity=0.557  Sum_probs=65.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGI   71 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~   71 (349)
                      ...|||+||||+++|+.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||++|..++
T Consensus        18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            4589999999999999999999999999999999986   368999999999999999999999999998765

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=1.8e-20  Score=149.48  Aligned_cols=71  Identities=54%  Similarity=0.918  Sum_probs=65.9

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---AGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK   72 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   72 (349)
                      ...+||+||||+++|+.++||+|||+|+++||||+++.   +.++|++|++||++|+||.+|+.||++|..++.
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            45799999999999999999999999999999999864   578999999999999999999999999987654

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.79  E-value=2e-20  Score=145.38  Aligned_cols=68  Identities=34%  Similarity=0.574  Sum_probs=62.5

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---------chHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAYEVLSDEKKRATYDRYGI   68 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---------~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~   68 (349)
                      |...|||+||||+++|+.+|||+|||+|+++||||+++         .+.++|++|++||++|+||.+|+.||.+..
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            35689999999999999999999999999999999975         356899999999999999999999998754

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=3.2e-19  Score=158.24  Aligned_cols=71  Identities=51%  Similarity=0.896  Sum_probs=66.3

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccc
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK   74 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~   74 (349)
                      +|||++|||+++|+.++||+|||+|+++||||+++   ++.++|++|++||++|+||.+|+.||++|+.++...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~   75 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   75 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc
Confidence            69999999999999999999999999999999985   478899999999999999999999999998877543

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.77  E-value=1.8e-19  Score=143.78  Aligned_cols=68  Identities=37%  Similarity=0.654  Sum_probs=63.1

Q ss_pred             CccccccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972           2 ADTKLYEVLGVSKSA-SDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSDEKKRATYDRYGIQ   69 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a-~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~   69 (349)
                      ...|||+||||+++| +.++||+|||+|++++|||+++.      +.++|++|++||++|+||.+|+.||+++..
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            357999999999999 99999999999999999999864      578999999999999999999999998763

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.2e-18  Score=134.06  Aligned_cols=61  Identities=39%  Similarity=0.572  Sum_probs=57.0

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHhccchhhhhh
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRAT   62 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~--~~~~~~f~~i~~Ay~~L~d~~~r~~   62 (349)
                      ...|||+||||+++|+.+|||+|||+|+++||||++  +.+.++|++|++||++|+||.+|+.
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            357999999999999999999999999999999999  4688999999999999999999874

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=1.7e-18  Score=146.83  Aligned_cols=68  Identities=34%  Similarity=0.589  Sum_probs=62.2

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---------hHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972           1 MADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---------AGDKFKEISFAYEVLSDEKKRATYDRYGI   68 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~   68 (349)
                      |..+|||+||||+++|+.++||+|||+|++++|||+++.         +.++|++|++||++|+||.+|+.||.++.
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            356899999999999999999999999999999999853         35899999999999999999999998754

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.73  E-value=2.5e-19  Score=143.46  Aligned_cols=65  Identities=35%  Similarity=0.560  Sum_probs=61.1

Q ss_pred             ccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972           3 DTKLYEVLGVSKSASD--QEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGI   68 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~   68 (349)
                      ..+||+||||+++|+.  ++||+|||+|++++|||+++. .++|++|++||++|+||.+|+.||.+|.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            3689999999999999  999999999999999999976 5899999999999999999999999875

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.72  E-value=2.5e-18  Score=128.95  Aligned_cols=65  Identities=20%  Similarity=0.342  Sum_probs=59.0

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccccc
Q psy4972           4 TKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQG   70 (349)
Q Consensus         4 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~   70 (349)
                      .++|+||||+++  |+.++||+|||+|++++|||+++ +.++|++|++||++|+|+.+|+. |.||..+
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~-~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~   77 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLR-MNLGGTG   77 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CHHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence            579999999999  99999999999999999999985 46899999999999999999988 5577654

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.72  E-value=5.4e-19  Score=151.05  Aligned_cols=64  Identities=36%  Similarity=0.546  Sum_probs=57.9

Q ss_pred             cccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhcccc
Q psy4972           4 TKLYEVLGVSKSAS--DQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGI   68 (349)
Q Consensus         4 ~~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~   68 (349)
                      .|||++|||+++|+  .+|||+|||+||+++|||++++ +++|++|++||++|+||.+|+.||+||.
T Consensus        11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            68999999999998  6999999999999999999976 4789999999999999999999999985

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.70  E-value=3.3e-18  Score=130.66  Aligned_cols=61  Identities=28%  Similarity=0.365  Sum_probs=55.8

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhh
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRAT   62 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~   62 (349)
                      ...++|+||||+++|+.+|||+|||+|+++||||++++    +.++|++|++||++|+|...|..
T Consensus        14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            45789999999999999999999999999999999975    57999999999999999877743

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.64  E-value=7.4e-17  Score=138.57  Aligned_cols=63  Identities=22%  Similarity=0.367  Sum_probs=58.5

Q ss_pred             ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972           5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDRYG   67 (349)
Q Consensus         5 ~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   67 (349)
                      |||++|||++++  +.++||+|||+|+++||||+++.        +.++|+.|++||++|+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            899999999999  99999999999999999999863        3468999999999999999999999864

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.64  E-value=5.5e-17  Score=119.11  Aligned_cols=59  Identities=20%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             CCccccccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhh
Q psy4972           1 MADTKLYEVLGVSK-SASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKR   60 (349)
Q Consensus         1 ~~~~~~y~iLgv~~-~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r   60 (349)
                      |...++|+||||++ +|+.++||+|||+|+++||||++ ++.++|++|++||++|+|+..|
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhc
Confidence            44578999999999 79999999999999999999997 5668999999999999998665

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.63  E-value=8.5e-17  Score=138.27  Aligned_cols=60  Identities=25%  Similarity=0.453  Sum_probs=56.6

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccchhhhhhh
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSDEKKRATY   63 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d~~~r~~Y   63 (349)
                      .|||++|||+++|+.++||+|||+|+++||||+++.      +.++|++|++||++|+|+.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            589999999999999999999999999999999853      578999999999999999999987

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.63  E-value=1.7e-16  Score=140.22  Aligned_cols=63  Identities=17%  Similarity=0.329  Sum_probs=57.7

Q ss_pred             ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972           3 DTKLYEVLGVSKS--ASDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR   65 (349)
Q Consensus         3 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~   65 (349)
                      ..|||++|||+++  ++.++||+|||+|+++||||+++.        +.++|+.|++||++|+||.+|+.||.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            4799999999996  799999999999999999999863        34689999999999999999999995

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.63  E-value=7.4e-17  Score=123.61  Aligned_cols=53  Identities=25%  Similarity=0.390  Sum_probs=49.2

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccc
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSD   56 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d   56 (349)
                      .++|++|||++.|+.+|||+|||++|++||||+|++      ++++|++|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999864      57899999999999975

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.61  E-value=1.5e-16  Score=137.70  Aligned_cols=65  Identities=23%  Similarity=0.468  Sum_probs=60.2

Q ss_pred             cccccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972           3 DTKLYEVL------GVSK-SASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYG   67 (349)
Q Consensus         3 ~~~~y~iL------gv~~-~a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   67 (349)
                      .+|||++|      |+++ +|+.++||+|||+|+++||||+++.+.++|+.|++||++|+||.+|+.||...
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            57999999      4665 89999999999999999999999888899999999999999999999999843

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.61  E-value=1.5e-16  Score=125.77  Aligned_cols=55  Identities=18%  Similarity=0.261  Sum_probs=50.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----------hHHHHHHHHHHHHhccchh
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----------AGDKFKEISFAYEVLSDEK   58 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----------~~~~f~~i~~Ay~~L~d~~   58 (349)
                      +.|||++|+++. |+.++||+|||+|+++||||+|+.          ++++|++|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            469999999996 999999999999999999999852          4789999999999999985

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.60  E-value=6.7e-17  Score=169.67  Aligned_cols=73  Identities=51%  Similarity=0.889  Sum_probs=40.9

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKEK   74 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~~   74 (349)
                      .++|||++|||+++|+.+|||+|||+|+++||||+++   ++.++|++|++||++|+||.+|+.||+||++++...
T Consensus        19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~   94 (780)
T 3apo_A           19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   94 (780)
T ss_dssp             ----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence            3579999999999999999999999999999999985   467899999999999999999999999999887644

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.49  E-value=5.5e-14  Score=105.25  Aligned_cols=77  Identities=31%  Similarity=0.768  Sum_probs=66.3

Q ss_pred             CCcceeeeeeeEeccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCc
Q psy4972         130 GKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGR  208 (349)
Q Consensus       130 G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~  208 (349)
                      |.+++|.+.+.+.|+.|+|+|..... ..+|+.|+|+|.++..+    |++ +.+.+|+.|+|.|+++  .++|+.|+|.
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~--~~~C~~C~G~   73 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFF-AVQQTCPHCQGRGTLI--KDPCNKCHGH   73 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTE-EEEEECTTTTTSSEEC--SSBCGGGTTS
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCC-EEeeECcCCCCccEEC--CCcCCCCCCe
Confidence            67889999999999999999987764 57999999999876533    455 5778999999999998  7899999999


Q ss_pred             cEEEe
Q psy4972         209 KTLSV  213 (349)
Q Consensus       209 g~~~~  213 (349)
                      |++.+
T Consensus        74 G~~~~   78 (79)
T 1exk_A           74 GRVER   78 (79)
T ss_dssp             SEEEC
T ss_pred             EEEee
Confidence            98853

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.30  E-value=3.2e-12  Score=116.13  Aligned_cols=52  Identities=19%  Similarity=0.294  Sum_probs=38.4

Q ss_pred             EEEEEecCC--CccCcEEEEcCCCCCCCCC-CCccEEEEEEEccCCc--ccccccee
Q psy4972         216 VLEVNVDKG--MKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDR--FQRQGINL  267 (349)
Q Consensus       216 ~~~v~Ip~G--~~~G~~i~~~g~G~~~~~~-~~GDl~v~i~v~~~~~--f~r~g~dL  267 (349)
                      .++|+||+|  +++|++++|+|+|.+..+. ..|||||+++|.-+..  ++.+...|
T Consensus       190 ~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~  246 (248)
T 1nlt_A          190 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK  246 (248)
T ss_dssp             EEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred             EEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence            589999999  9999999999999986433 5799999999997776  66665544

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=2e-10  Score=91.07  Aligned_cols=53  Identities=17%  Similarity=0.262  Sum_probs=44.8

Q ss_pred             EEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCCccccccceeEE
Q psy4972         216 VLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHDRFQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~  269 (349)
                      .++|+||+|+++|++++++|+|.+..+ ..|||||+++|.-+..++.+..+++.
T Consensus        39 ~~~v~ip~g~~~G~~~rl~G~G~p~~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~   91 (109)
T 3i38_A           39 SILLTVPPGSQAGQRLRIKGKGLVSKT-HTGDLFAVIKIVMPTKPDEKARELWQ   91 (109)
T ss_dssp             CEEEEECTTCCTTCEEEETTCSCBCSS-CBCCEEEEEEECCCSSCCHHHHHHHH
T ss_pred             CEEEeeCCCcCcCeEEEECCccCCCCC-CCcCEEEEEEEECCCCCCHHHHHHHH
Confidence            368999999999999999999998744 78999999999988877766655443

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.95  E-value=3.7e-10  Score=80.57  Aligned_cols=56  Identities=18%  Similarity=0.105  Sum_probs=49.6

Q ss_pred             CCccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccch
Q psy4972           1 MADTKLYEVLGVSKS---ASDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDE   57 (349)
Q Consensus         1 ~~~~~~y~iLgv~~~---a~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~   57 (349)
                      |...+.|.||||++.   ++.++|++|||+|...+|||+. ++.-....|++|++.|...
T Consensus         1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence            566789999999999   9999999999999999999996 5667788899999999643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.94  E-value=5.2e-10  Score=107.48  Aligned_cols=63  Identities=48%  Similarity=0.722  Sum_probs=54.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSDEKKRATYDR   65 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d~~~r~~YD~   65 (349)
                      ..++|.+||+.++++.++|+++|+++++++|||+.+.      +.++|++|.+||++|+||++|+.||+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            3589999999999999999999999999999999863      56799999999999999999999997

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=98.88  E-value=1.4e-09  Score=87.75  Aligned_cols=54  Identities=19%  Similarity=0.275  Sum_probs=42.3

Q ss_pred             EEEEEecCC--CccCcEEEEcCCCCCCCCC-CCccEEEEEEEccCCc--cccccceeEE
Q psy4972         216 VLEVNVDKG--MKEMQKIYFRGEGDQQPDQ-EPGDVIIVLEQKPHDR--FQRQGINLVT  269 (349)
Q Consensus       216 ~~~v~Ip~G--~~~G~~i~~~g~G~~~~~~-~~GDl~v~i~v~~~~~--f~r~g~dL~~  269 (349)
                      .+.|+||+|  +++|++++++|+|.+..++ ..|||||+++|.-+..  ++.+..+++.
T Consensus        35 ~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l~   93 (121)
T 1xao_A           35 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKLE   93 (121)
T ss_dssp             EEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHHH
T ss_pred             EEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH
Confidence            578999999  9999999999999986543 6899999999998876  7766655443

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.69  E-value=3.6e-08  Score=84.26  Aligned_cols=68  Identities=18%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             eeEEEeecCHHHHhCCcEEEEecC----CC----cEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEE
Q psy4972         266 NLVTTETITLTEALCGFTKVIKHL----DD----RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ  336 (349)
Q Consensus       266 dL~~~l~I~l~~al~G~~~~i~~l----~g----~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~  336 (349)
                      |+.+.+.|||.||+.|++++|...    .|    +++.|+||+|  +.+|+++|++|+|-+...+ +..|||||.+++.
T Consensus         2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~   77 (170)
T 1c3g_A            2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG--WKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK   77 (170)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT--CCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred             CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCC--ccCCCEEEEeccccCCCCC-CccccEEEEEEEc
Confidence            789999999999999999988643    23    6899999999  8999999999999864333 3579999999996

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.68  E-value=3.9e-08  Score=84.82  Aligned_cols=69  Identities=22%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             cceeEEEeecCHHHHhCCcEEEEecC-----------CCcEEEEEcCCCCCcCCCcEEEEcCCCcC-CCCCCCCCCcEEE
Q psy4972         264 GINLVTTETITLTEALCGFTKVIKHL-----------DDRQLLITHPPGEVIKPEDIKGIVGEGMP-IYKNPYEKGTLYI  331 (349)
Q Consensus       264 g~dL~~~l~I~l~~al~G~~~~i~~l-----------~g~~i~v~ip~~~v~~~g~~~~l~g~G~p-~~~~~~~~Gdl~v  331 (349)
                      +.|+.+.+.|||.||+.|++++|...           ..+++.|+||+|  +.+|+++|++|+|-+ ..+  +..|||||
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G--~~~G~~ir~~g~G~~g~~g--g~~GDl~v   78 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPG--WKDGTKLTYSGEGDQESPG--TSPGDLVL   78 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTT--CCTTCEEEETTCSCCSSTT--SCCCEEEE
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCC--CcCCcEEEEeeccCCCCCC--CccccEEE
Confidence            67999999999999999999988643           246799999999  899999999999987 332  35899999


Q ss_pred             EEEEE
Q psy4972         332 KFDVQ  336 (349)
Q Consensus       332 ~~~v~  336 (349)
                      .+++.
T Consensus        79 ~i~~~   83 (180)
T 2q2g_A           79 IIQTK   83 (180)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99986

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.62  E-value=8.3e-08  Score=82.83  Aligned_cols=69  Identities=19%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             cceeEEEeecCHHHHhCCcEEEEecC------CC-------cEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEE
Q psy4972         264 GINLVTTETITLTEALCGFTKVIKHL------DD-------RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLY  330 (349)
Q Consensus       264 g~dL~~~l~I~l~~al~G~~~~i~~l------~g-------~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~  330 (349)
                      +.|+.+.+.|||.||+.|++++|...      .|       +++.|+||+|  +.+|+++|++|+|-+..+  +..||||
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G--~~~G~~ir~~G~G~~~~~--g~~GDl~   77 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKG--WKEGTKITFPKEGDQTSN--NIPADIV   77 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTT--CCTTCEEEETTCSCCCSS--SCCCCEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCC--ccCCcEEEEeeccccCCC--CCcccEE
Confidence            56899999999999999999888632      24       5789999999  899999999999988654  3689999


Q ss_pred             EEEEEE
Q psy4972         331 IKFDVQ  336 (349)
Q Consensus       331 v~~~v~  336 (349)
                      |.+++.
T Consensus        78 v~i~~~   83 (181)
T 3agx_A           78 FVLKDK   83 (181)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999987

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.56  E-value=7.5e-08  Score=90.69  Aligned_cols=72  Identities=21%  Similarity=0.300  Sum_probs=56.2

Q ss_pred             cccceeEEEeecCHHHHhCCcEEEEecC------C-------CcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCc
Q psy4972         262 RQGINLVTTETITLTEALCGFTKVIKHL------D-------DRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGT  328 (349)
Q Consensus       262 r~g~dL~~~l~I~l~~al~G~~~~i~~l------~-------g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gd  328 (349)
                      +.|.||.+.+.|+|.||+.|.+..|..-      .       .+++.|+||+|  +++|+++|++|+|.|..++ +..||
T Consensus       138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~G--v~~G~~Irl~G~G~~g~~g-g~~GD  214 (329)
T 3lz8_A          138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAG--VVDGQRIRLKGQGTPGENG-GPNGD  214 (329)
T ss_dssp             CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTT--CCTTCEEEESSCSCCC----CCCCC
T ss_pred             CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCC--CCCCCEEEEcccccCCCCC-CCCCc
Confidence            4577888888888888888877766432      2       34688999999  8999999999999986543 35899


Q ss_pred             EEEEEEEE
Q psy4972         329 LYIKFDVQ  336 (349)
Q Consensus       329 l~v~~~v~  336 (349)
                      |||+|+|.
T Consensus       215 L~v~I~v~  222 (329)
T 3lz8_A          215 LWLVIHIA  222 (329)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEEEe
Confidence            99999886

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.75  E-value=7e-06  Score=55.76  Aligned_cols=32  Identities=22%  Similarity=0.750  Sum_probs=26.4

Q ss_pred             EeeeeCCCCCCcceEEcCCCCCCcCCCccEEEee
Q psy4972         181 QIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSVK  214 (349)
Q Consensus       181 ~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~~  214 (349)
                      +++.+|+.|+|+|+++  .++|+.|+|.|++.+.
T Consensus         7 q~~~~C~~C~GsG~~i--~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            7 DLETTCPNCNGSGREE--PEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HHEEECTTTTTSCEET--TEECTTTTTSSEEECH
T ss_pred             ceeccCcCCcccccCC--CCcCCCCCCcEEEEEE
Confidence            5677899999999888  6889999999887654

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.65  E-value=1.7e-05  Score=58.60  Aligned_cols=45  Identities=36%  Similarity=0.829  Sum_probs=35.9

Q ss_pred             eeEeccCCCCCCCCCC------CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972         139 KSVICSTCNGKGSKSG------ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM  196 (349)
Q Consensus       139 ~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~  196 (349)
                      ....|+.|+|+|....      ...+|+.|+|+|.+             +..+|+.|+|.|++.
T Consensus        27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~G~~~   77 (79)
T 1exk_A           27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL-------------IKDPCNKCHGHGRVE   77 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE-------------CSSBCGGGTTSSEEE
T ss_pred             cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE-------------CCCcCCCCCCeEEEe
Confidence            3568999999996531      13589999999973             457899999999875

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.64  E-value=2.5e-05  Score=60.90  Aligned_cols=44  Identities=34%  Similarity=0.762  Sum_probs=35.7

Q ss_pred             eEeccCCCCCCCCC---C---CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972         140 SVICSTCNGKGSKS---G---ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM  196 (349)
Q Consensus       140 ~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~  196 (349)
                      ...|+.|+|+|...   +   ...+|+.|+|+|.             .+..+|+.|+|.|++.
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~-------------~i~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGS-------------IIISPCVVCRGAGQAK   94 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSE-------------ECSSCCSSSSSCSEEC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcce-------------ECCCcCCCCCCeeEEE
Confidence            46799999999542   1   2468999999997             3467999999999886

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=97.50  E-value=8e-07  Score=90.32  Aligned_cols=78  Identities=14%  Similarity=0.217  Sum_probs=56.9

Q ss_pred             eeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCC----cccCCCCCccceEEEE--------EEecCccceEeee
Q psy4972         117 VHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGA----TFTCASCRGCGFKIHH--------RIIGPNMTQQIQA  184 (349)
Q Consensus       117 ~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~----~~~C~~C~G~G~~~~~--------~~~~~g~~~~~~~  184 (349)
                      .+.++++|+|++.|.++++.+.+.+.|..|+|+|+..+.    ..+|+.|+|+......        ...=.|.+.+...
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~  247 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS  247 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence            467889999999999999999999999999999998874    6799999999421000        0000011113345


Q ss_pred             eCCCCCCcce
Q psy4972         185 RCSDCQGEGE  194 (349)
Q Consensus       185 ~C~~C~G~G~  194 (349)
                      .|..|+..+.
T Consensus       248 ~C~~CH~~~~  257 (669)
T 3pmq_A          248 NCQTCHADNP  257 (669)
T ss_dssp             CCTTTSCCCT
T ss_pred             cchhhcCCcc
Confidence            7888888774

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.04  E-value=0.00029  Score=47.70  Aligned_cols=11  Identities=27%  Similarity=0.809  Sum_probs=5.8

Q ss_pred             ccCCCCCccce
Q psy4972         157 FTCASCRGCGF  167 (349)
Q Consensus       157 ~~C~~C~G~G~  167 (349)
                      .+|+.|+|+|.
T Consensus        10 ~~C~~C~GsG~   20 (53)
T 2bx9_A           10 VACPKCERAGE   20 (53)
T ss_dssp             EECTTTTTSSE
T ss_pred             ccCCCCcceec
Confidence            34555555554

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.99  E-value=0.00035  Score=47.29  Aligned_cols=26  Identities=35%  Similarity=0.866  Sum_probs=14.5

Q ss_pred             EeccCCCCCCCCCCCcccCCCCCccceE
Q psy4972         141 VICSTCNGKGSKSGATFTCASCRGCGFK  168 (349)
Q Consensus       141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~  168 (349)
                      ..|+.|+|+|....  .+|+.|+|+|.+
T Consensus        10 ~~C~~C~GsG~~~~--~~C~~C~G~G~v   35 (53)
T 2bx9_A           10 VACPKCERAGEIEG--TPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEETT--EECTTTTTSSEE
T ss_pred             ccCCCCcceeccCC--CCCccCCCCccE
Confidence            45666666665432  456666666654

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.97  E-value=0.00037  Score=47.15  Aligned_cols=13  Identities=31%  Similarity=1.020  Sum_probs=6.8

Q ss_pred             eeCCCCCCcceEE
Q psy4972         184 ARCSDCQGEGEVM  196 (349)
Q Consensus       184 ~~C~~C~G~G~~~  196 (349)
                      .+|+.|+|.|.+.
T Consensus        24 ~~C~~C~G~G~v~   36 (53)
T 3lcz_A           24 EPCPKCLGKGVIL   36 (53)
T ss_dssp             EECTTTTTSSEEE
T ss_pred             CcCCCCCCcEEEE
Confidence            4555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	349
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	5e-21
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	2e-20
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	4e-19
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	6e-19
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	8e-19
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	8e-19
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-18
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	1e-18
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	3e-17
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-16
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	4e-16
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	3e-10
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	4e-10
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	5e-10
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	8e-05

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 83.5 bits (206), Expect = 5e-21
 Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 3/75 (4%)

Query: 2  ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAG---DKFKEISFAYEVLSDEK 58
          A    YE+LGVSK+A ++EI+KAY++LA ++HPD+N        KFKEI  AYEVL+D +
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 59 KRATYDRYGIQGIKE 73
          KRA YD+YG    ++
Sbjct: 61 KRAAYDQYGHAAFEQ 75

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.9 bits (202), Expect = 2e-20
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319
           F+R G +LV    I L  A+ G    ++H+    L +   PGEVI P   K I G+GMPI
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 320 YKNPYEKGTLYIKFDVQFPE 339
            K     G L IKF ++ PE
Sbjct: 62  PKYG-GYGNLIIKFTIKDPE 80

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.6 bits (193), Expect = 4e-19
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 139 KSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNE 198
           K ++C  C G+G K GA   C SC G G K   R +GP M Q+ Q  C  C G G++++ 
Sbjct: 1   KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDP 59

Query: 199 KDRCGSCAGRKT 210
           KDRC SC G+K 
Sbjct: 60  KDRCKSCNGKKV 71

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.4 bits (193), Expect = 6e-19
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPEAGDK------FKEISFAYEVLSDEKKR 60
          ++ +G++   + +++KK YRK     HPDK      +      F E++ A+    ++ ++
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 95

Query: 61 ATY 63
            Y
Sbjct: 96 PLY 98

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 77.7 bits (191), Expect = 8e-19
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 5  KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
          +L E+L + +        +++AY++ +   HPDK   +    +E++  +     E     
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLR 70

Query: 63 YDRYG 67
           +  G
Sbjct: 71 MNLGG 75

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 8e-19
 Identities = 41/74 (55%), Positives = 56/74 (75%), Gaps = 5/74 (6%)

Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKN--PEAGDKFKEISFAYEVLSDEKKRATYD 64
          Y+ LG+++ ASD+EIK+AYR+ A  +HPDKN  P A +KFKEI+ AY+VLSD +KR  +D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

Query: 65 RYGIQGIKEKAGGG 78
          RYG +G+K   G G
Sbjct: 66 RYGEEGLK---GSG 76

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (191), Expect = 1e-18
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 7  YEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---------EAGDKFKEISFAYEVLSDE 57
          Y +LG   SA+  ++K+ Y+KL   +HPDK           E   KF EI  A+++L +E
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 58 KKRATYDRYG 67
          + +  YD   
Sbjct: 79 ETKKKYDLQR 88

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.3 bits (190), Expect = 1e-18
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 260 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 319
           F+R G +L+ T  ++  E+L GF+K I+ +D R L ++      ++P       G+GMP 
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQ--PVQPSQTSTYPGQGMPT 59

Query: 320 YKNPYEKGTLYIKFDVQFPES 340
            KNP ++G L +K+ V +P S
Sbjct: 60  PKNPSQRGNLIVKYKVDYPIS 80

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 73.1 bits (179), Expect = 3e-17
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 7  YEVLGVSKSAS--DQEIKKAYRKLAKEFHPDKNPEAGD--------KFKEISFAYEVLSD 56
          + + G+        Q +   ++ L +++HPDK              +   I+ A++ L  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 57 EKKRATYD 64
             RA Y 
Sbjct: 64 PLMRAEYL 71

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 71.7 bits (175), Expect = 3e-16
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 5   KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRAT 62
           +L ++LG+ +SA  +   ++KAY K  KEFHPDK  +  +K K+++  Y+ + D  K A 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAH 67

Query: 63  YDRYGIQGIKEKAGGGGADFSDDLISQLFGGRLF 96
              +G      +    G D  +   +      LF
Sbjct: 68  QPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLF 101

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 4e-16
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 6  LYEVLGVSKSASDQEIKKAYRKLAKEFHPDKN----PEAGDKFKEISFAYEVLSDEKKRA 61
          +  V+  +    + E KK  R+L  ++HPDKN      A + FK +      L   +K+A
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQA 74

Query: 62 TYDRYG 67
            D+  
Sbjct: 75 FLDQNA 80

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (128), Expect = 3e-10
 Identities = 23/43 (53%), Positives = 34/43 (79%)

Query: 215 KVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPH 257
           K+LEV+V+ GMK+ Q+I F+GE DQ PD  PGDV+ ++ ++PH
Sbjct: 31  KILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPH 73

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 53.6 bits (128), Expect = 4e-10
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 130 GKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDC 189
           G T ++++     C  C+G G+K G                 ++        +Q  C  C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQT----CPTCHGSGQVQMRQGFFAVQQTCPHC 56

Query: 190 QGEGEVMNEKDRCGSCAGR 208
           QG G ++  KD C  C G 
Sbjct: 57  QGRGTLI--KDPCNKCHGH 73

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (128), Expect = 5e-10
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 193 GEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQP-DQEPGDVIIV 251
           G+  + K       G      K  +++ +  G K   KI ++ +GD  P       +  V
Sbjct: 17  GKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFV 73

Query: 252 LEQKPH 257
           +++K H
Sbjct: 74  IQEKSH 79

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 38.6 bits (89), Expect = 8e-05
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 139 KSVICSTCNGKGSKSGATF----TCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGE 194
           +S  C +C+  G+ S         C SC G   ++       +      A C        
Sbjct: 10  ESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLV-CADCHAVHDMNV 68

Query: 195 VMNEKDRCGSC--AGRKTLSVKK 215
               K  C SC   GR + SV K
Sbjct: 69  GQ--KPTCESCHDDGRTSASVLK 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.9
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.9
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.86
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.83
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.8
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.72
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.7
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.68
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.67
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.65
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.63
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.59
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.36
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.88
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.86
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.71
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.79
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.34
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.46
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	84.78
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	83.22

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=9.1e-25  Score=166.60  Aligned_cols=86  Identities=36%  Similarity=0.668  Sum_probs=82.0

Q ss_pred             ccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcC
Q psy4972         259 RFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP  338 (349)
Q Consensus       259 ~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P  338 (349)
                      .|+|+|+||+++++||++||++|++++|+|+||+.+.|++|++  +++|++++|+|+|||..++++.+|||||+|+|.+|
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P   78 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYP   78 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCC
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccc--cccccccccCCCCCCcCCCCCCcCCEEEEEEEEcC
Confidence            4999999999999999999999999999999999999999988  89999999999999998777789999999999999


Q ss_pred             CCCCCCcccc
Q psy4972         339 ESYFNNDAKL  348 (349)
Q Consensus       339 ~~~~ls~~q~  348 (349)
                      ++  ||++|+
T Consensus        79 ~~--ls~~qk   86 (90)
T d1c3ga2          79 IS--LNDAQK   86 (90)
T ss_dssp             SS--CCTTHH
T ss_pred             CC--CCHHHH
Confidence            99  999985

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3e-24  Score=157.84  Aligned_cols=71  Identities=56%  Similarity=0.945  Sum_probs=65.5

Q ss_pred             CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHHHHhccchhhhhhhhcccccccc
Q psy4972           2 ADTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP---EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIK   72 (349)
Q Consensus         2 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~   72 (349)
                      +.+|||+||||+++||.+|||+|||+|+++||||+++   .+.++|+.|++||+||+||.+|+.||+||+.++.
T Consensus         1 ak~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            4689999999999999999999999999999999985   3568899999999999999999999999987653

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.5e-23  Score=152.40  Aligned_cols=70  Identities=54%  Similarity=0.932  Sum_probs=65.8

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhccchhhhhhhhccccccccc
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNP--EAGDKFKEISFAYEVLSDEKKRATYDRYGIQGIKE   73 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~~~   73 (349)
                      +|||+||||+++||.++|++||++|++++|||+++  .+.++|+.|++||+||+||.+|+.||+||++++++
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            59999999999999999999999999999999974  57789999999999999999999999999988753

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.4e-22  Score=149.72  Aligned_cols=80  Identities=40%  Similarity=0.543  Sum_probs=75.9

Q ss_pred             ccccccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEEcC
Q psy4972         259 RFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFP  338 (349)
Q Consensus       259 ~f~r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~~P  338 (349)
                      .|+|+|+||+++++|+++||++|++++|+|+||+.+.|+||+++++++|++++|+|+|||..++ +.+|||||+|+|++|
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~V~~P   79 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-GGYGNLIIKFTIKDP   79 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS-CSBCCEEEEEEEECC
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCc-CCcCcEEEEEEEEcC
Confidence            4999999999999999999999999999999999999999999889999999999999999875 479999999999999


Q ss_pred             C
Q psy4972         339 E  339 (349)
Q Consensus       339 ~  339 (349)
                      +
T Consensus        80 k   80 (80)
T d1nlta2          80 E   80 (80)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.83  E-value=4.6e-22  Score=158.10  Aligned_cols=67  Identities=34%  Similarity=0.491  Sum_probs=61.6

Q ss_pred             cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhccccccc
Q psy4972           4 TKLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYGIQGI   71 (349)
Q Consensus         4 ~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~~~   71 (349)
                      .+||+||||+++|  +.++||+|||+||+++|||+++. .++|++|++||+||+|+.+|+.||.++....
T Consensus         8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~-~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~~   76 (114)
T d1gh6a_           8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   76 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh-HHHHHHHHHHHHHhCCHHHHHHHhccCCCCc
Confidence            6899999999999  78899999999999999999974 5789999999999999999999999886543

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.1e-20  Score=144.60  Aligned_cols=65  Identities=34%  Similarity=0.600  Sum_probs=60.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc---------hHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972           3 DTKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE---------AGDKFKEISFAYEVLSDEKKRATYDRYG   67 (349)
Q Consensus         3 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~---------~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   67 (349)
                      .+|||+||||+++|+.+|||+||++|+++||||+++.         ++++|+.|++||++|+||.+|+.||...
T Consensus        15 ~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             ccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            4799999999999999999999999999999999852         4678999999999999999999999763

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.72  E-value=6.9e-19  Score=129.39  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=58.9

Q ss_pred             ccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhccchhhhhhhhccc
Q psy4972           3 DTKLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPEAGDKFKEISFAYEVLSDEKKRATYDRYG   67 (349)
Q Consensus         3 ~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~d~~~r~~YD~~G   67 (349)
                      ..+||+||||++++  +.++||+|||+++++||||++. +.++|++|++||++|+|+.+|..||..+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g-~~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC-CHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            36899999999988  9999999999999999999984 5688999999999999999999999754

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=2.9e-17  Score=119.77  Aligned_cols=73  Identities=51%  Similarity=0.947  Sum_probs=66.5

Q ss_pred             CCCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCC
Q psy4972         111 HRGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQ  190 (349)
Q Consensus       111 ~~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~  190 (349)
                      +++.|+.++|.|||+|||.|+++++.+.                                                    
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~----------------------------------------------------   29 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN----------------------------------------------------   29 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE----------------------------------------------------
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec----------------------------------------------------
Confidence            5688999999999999999999886643                                                    


Q ss_pred             CcceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCCCCCccEEEEEEEccCC
Q psy4972         191 GEGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPDQEPGDVIIVLEQKPHD  258 (349)
Q Consensus       191 G~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~  258 (349)
                                             .+.++|+||+|+++|++|+|+|+|++.+++.+|||+|+|++++|+
T Consensus        30 -----------------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          30 -----------------------RKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             -----------------------EEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCS
T ss_pred             -----------------------CccEEEEecccccCCeEEEecCCcCCCCCCCCCCEEEEEEecCCC
Confidence                                   247899999999999999999999999988999999999999995

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=8.6e-17  Score=119.10  Aligned_cols=79  Identities=29%  Similarity=0.491  Sum_probs=66.8

Q ss_pred             CCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcc
Q psy4972         114 EDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEG  193 (349)
Q Consensus       114 ~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G  193 (349)
                      +++.+.|.|||||+|+|+++++.+.|..    |+|                                           . 
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~----~~g-------------------------------------------~-   32 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----PHG-------------------------------------------A-   32 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE----TTT-------------------------------------------E-
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceec----ccC-------------------------------------------C-
Confidence            3688999999999999999999887532    111                                           1 


Q ss_pred             eEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCCC-CCCccEEEEEEEccCC
Q psy4972         194 EVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPHD  258 (349)
Q Consensus       194 ~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~~  258 (349)
                                        .+.+.++|+||||+++|++|+|+|+|++.++ +.+|||+|+|++++||
T Consensus        33 ------------------~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          33 ------------------SEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             ------------------EEEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             ------------------CceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence                              1345799999999999999999999999875 5789999999999997

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.2e-17  Score=122.48  Aligned_cols=61  Identities=23%  Similarity=0.414  Sum_probs=54.9

Q ss_pred             ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCcc--------hHHHHHHHHHHHHhccchhhhhhhhc
Q psy4972           5 KLYEVLGVSKSA--SDQEIKKAYRKLAKEFHPDKNPE--------AGDKFKEISFAYEVLSDEKKRATYDR   65 (349)
Q Consensus         5 ~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~d~~~r~~YD~   65 (349)
                      |||++|||++.+  +.+||++|||+++++||||+...        +.+.|+.|++||++|+||.+|+.|+.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            899999999964  58999999999999999999642        45779999999999999999999985

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-17  Score=123.37  Aligned_cols=63  Identities=32%  Similarity=0.441  Sum_probs=56.5

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHHHHhccchhhhhhhhccccc
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE----AGDKFKEISFAYEVLSDEKKRATYDRYGIQ   69 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~d~~~r~~YD~~G~~   69 (349)
                      +++|+||+|+.+||.+|||+|||+|+++||||+|++    +.++|+.|++||++|+   +++.||++...
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~~   82 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNADR   82 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSSC
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccchH
Confidence            689999999999999999999999999999999974    5789999999999996   46778876553

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2.6e-16  Score=114.50  Aligned_cols=74  Identities=42%  Similarity=0.977  Sum_probs=66.7

Q ss_pred             eeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEEe
Q psy4972         139 KSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLSV  213 (349)
Q Consensus       139 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~~  213 (349)
                      |.++|++|+|+|+..++..+|+.|+|+|++....++++++ +++..+|+.|+|+|+++..+++|+.|+|++++++
T Consensus         1 r~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~-~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           1 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMI-QRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEE-EEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             CccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcE-EEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            5789999999999887778999999999999999999854 5788999999999999988899999999998764

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1e-16  Score=122.87  Aligned_cols=60  Identities=25%  Similarity=0.453  Sum_probs=55.6

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhccchhhhhhh
Q psy4972           4 TKLYEVLGVSKSASDQEIKKAYRKLAKEFHPDKNPE------AGDKFKEISFAYEVLSDEKKRATY   63 (349)
Q Consensus         4 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~d~~~r~~Y   63 (349)
                      .+.|++||++..++.++||+|||++++.+|||+++.      +.+.|+.|++||++|+||.+|+.|
T Consensus        33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            478999999999999999999999999999998753      467899999999999999999988

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=8.3e-16  Score=113.29  Aligned_cols=77  Identities=31%  Similarity=0.748  Sum_probs=65.9

Q ss_pred             CCcceeeeeeeEeccCCCCCCCCCCC-cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCc
Q psy4972         130 GKTTKLQLTKSVICSTCNGKGSKSGA-TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGR  208 (349)
Q Consensus       130 G~~~~i~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~  208 (349)
                      |.+++|.|++.+.|+.|+|+|+..+. ..+|+.|+|+|++..  .  ++++ +++++|+.|+|+|+++  .++|+.|+|+
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~--~--~g~~-~~~~~C~~C~G~G~~i--~~~C~~C~G~   73 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM--R--QGFF-AVQQTCPHCQGRGTLI--KDPCNKCHGH   73 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE--E--ETTE-EEEEECTTTTTSSEEC--SSBCGGGTTS
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEE--e--cccc-eeeEECcccCcceeEC--CCCCCCCCCc
Confidence            68899999999999999999998874 788999999998632  2  2333 5677999999999998  7899999999


Q ss_pred             cEEEe
Q psy4972         209 KTLSV  213 (349)
Q Consensus       209 g~~~~  213 (349)
                      |++.+
T Consensus        74 G~v~k   78 (79)
T d1exka_          74 GRVER   78 (79)
T ss_dssp             SEEEC
T ss_pred             eEeec
Confidence            99865

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=5.8e-13  Score=96.49  Aligned_cols=70  Identities=17%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             cccceeEEEeecCHHHHhCCcEEEEecCCCcEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEE
Q psy4972         262 RQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ  336 (349)
Q Consensus       262 r~g~dL~~~l~I~l~~al~G~~~~i~~l~g~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~  336 (349)
                      |+|.|+++++.|||.||+.|+++.|.+ +.+.+.|+||+|  +.+|+++|++|+|.+..+  +.+|||+|++++.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~-~~~~~~i~Ip~G--~~~G~~ir~~g~G~~~~~--~~~GDl~v~i~~~   71 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLAL-NRKILEVHVEPG--MKDGQRIVFKGEADQAPD--VIPGDVVFIVSER   71 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEE-EEEEEEEEECTT--CCTTCEEEETTCSCCCTT--CBCCCEEEEEEEC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceee-cCccEEEEeccc--ccCCeEEEecCCcCCCCC--CCCCCEEEEEEec
Confidence            679999999999999999999999986 455899999999  899999999999998754  3589999999874

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=2.7e-09  Score=77.90  Aligned_cols=69  Identities=17%  Similarity=0.129  Sum_probs=57.3

Q ss_pred             ceeEEEeecCHHHHhCCcEEEEec----CCC----cEEEEEcCCCCCcCCCcEEEEcCCCcCCCCCCCCCCcEEEEEEEE
Q psy4972         265 INLVTTETITLTEALCGFTKVIKH----LDD----RQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQ  336 (349)
Q Consensus       265 ~dL~~~l~I~l~~al~G~~~~i~~----l~g----~~i~v~ip~~~v~~~g~~~~l~g~G~p~~~~~~~~Gdl~v~~~v~  336 (349)
                      .++..++.|||.||+.|++..|..    .+|    +++.|.||||  +.+|++++++|+|....++ +.+|||+|.+++.
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G--~~~G~~i~~~g~G~~~~~~-~~~GDl~~~i~~~   77 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPG--WKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK   77 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTT--CCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCC--CCCCcEEEECCccccCcCC-CCCCCEEEEEEeC
Confidence            378899999999999999877753    344    3689999999  8999999999999876553 3579999999875

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=7.8e-10  Score=82.73  Aligned_cols=81  Identities=16%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             CCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCC
Q psy4972         112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQG  191 (349)
Q Consensus       112 ~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G  191 (349)
                      +|.|+.+.+.|||.||+.|+++++..-                                                     
T Consensus         5 ~G~DL~~~~~I~~~eal~G~~~~i~~~-----------------------------------------------------   31 (90)
T d1c3ga2           5 DGDDLIYTLPLSFKESLLGFSKTIQTI-----------------------------------------------------   31 (90)
T ss_dssp             ETTEEEEEECCBHHHHHHCEEEEEECS-----------------------------------------------------
T ss_pred             eCCeEEEEEEeCHHHHhcCCeEEEecc-----------------------------------------------------
Confidence            578999999999999999999886632                                                     


Q ss_pred             cceEEcCCCCCCcCCCccEEEeeEEEEEEecCCCccCcEEEEcCCCCCCC--CCCCccEEEEEEEccCCccccccce
Q psy4972         192 EGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKGMKEMQKIYFRGEGDQQP--DQEPGDVIIVLEQKPHDRFQRQGIN  266 (349)
Q Consensus       192 ~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~--~~~~GDl~v~i~v~~~~~f~r~g~d  266 (349)
                                           .-+.++|+||+|+++|++++++|+|.+..  .+..|||+|++++.-+..++.+..+
T Consensus        32 ---------------------dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls~~qk~   87 (90)
T d1c3ga2          32 ---------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKR   87 (90)
T ss_dssp             ---------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHH
T ss_pred             ---------------------cccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCCHHHHH
Confidence                                 01368899999999999999999999753  3567999999999977767665443

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=9.7e-09  Score=74.84  Aligned_cols=72  Identities=22%  Similarity=0.294  Sum_probs=58.6

Q ss_pred             CCCCeeeeEEeChhhhhcCCcceeeeeeeEeccCCCCCCCCCCCcccCCCCCccceEEEEEEecCccceEeeeeCCCCCC
Q psy4972         112 RGEDTVHPLKVSLEDLYNGKTTKLQLTKSVICSTCNGKGSKSGATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQG  191 (349)
Q Consensus       112 ~~~d~~~~l~vsl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G  191 (349)
                      ++.|+.++++|||.||+.|+++++....                                                    
T Consensus         5 ~G~dL~~~~~I~~~eal~G~~~~i~~~d----------------------------------------------------   32 (80)
T d1nlta2           5 DGDDLVYEAEIDLLTAIAGGEFALEHVS----------------------------------------------------   32 (80)
T ss_dssp             ETTEEEEEEEEEHHHHHHCBCCEEECSS----------------------------------------------------
T ss_pred             eCCEEEEEEEeCHHHHhCCCEEEEEecC----------------------------------------------------
Confidence            5789999999999999999988776421                                                    


Q ss_pred             cceEEcCCCCCCcCCCccEEEeeEEEEEEecCC--CccCcEEEEcCCCCCCCC-CCCccEEEEEEEccC
Q psy4972         192 EGEVMNEKDRCGSCAGRKTLSVKKVLEVNVDKG--MKEMQKIYFRGEGDQQPD-QEPGDVIIVLEQKPH  257 (349)
Q Consensus       192 ~G~~~~~~~~C~~C~g~g~~~~~~~~~v~Ip~G--~~~G~~i~~~g~G~~~~~-~~~GDl~v~i~v~~~  257 (349)
                                            ...++|+||++  +++|++++++|+|.+..+ +..|||+|+++|.-+
T Consensus        33 ----------------------g~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~P   79 (80)
T d1nlta2          33 ----------------------GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDP   79 (80)
T ss_dssp             ----------------------SCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECC
T ss_pred             ----------------------cceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcC
Confidence                                  12566667766  999999999999998754 568999999998743

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=3.5e-06  Score=60.68  Aligned_cols=44  Identities=39%  Similarity=0.917  Sum_probs=35.6

Q ss_pred             eEeccCCCCCCCCC---C---CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972         140 SVICSTCNGKGSKS---G---ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM  196 (349)
Q Consensus       140 ~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~  196 (349)
                      ...|+.|+|+|...   +   ...+|+.|+|+|.             .+..+|+.|+|+|++.
T Consensus        28 ~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~-------------~i~~~C~~C~G~G~v~   77 (79)
T d1exka_          28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGT-------------LIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSE-------------ECSSBCGGGTTSSEEE
T ss_pred             ceeCCCccceeEEEEecccceeeEECcccCccee-------------ECCCCCCCCCCceEee
Confidence            46799999999543   1   2468999999998             3457899999999886

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=1.8e-05  Score=55.98  Aligned_cols=45  Identities=33%  Similarity=0.689  Sum_probs=33.7

Q ss_pred             EeccCCCCCCCCCC----------CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEE
Q psy4972         141 VICSTCNGKGSKSG----------ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVM  196 (349)
Q Consensus       141 ~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~  196 (349)
                      ..|+.|+|+|....          ...+|+.|+|+|.++           ....+|+.|+|+|.+.
T Consensus        19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i-----------~~~~~C~~C~G~g~v~   73 (74)
T d1nlta3          19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII-----------DPKDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC-----------CTTSBCSSSTTSCEEE
T ss_pred             CCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEe-----------CCCCCCCCCCCeeEeC
Confidence            45999999996431          145799999999732           2345899999999763

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.46  E-value=2.1e-05  Score=57.73  Aligned_cols=68  Identities=22%  Similarity=0.359  Sum_probs=47.4

Q ss_pred             eccCCCCCCCCCCC----cccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceEEcCCCCCCcCCCccEEE
Q psy4972         142 ICSTCNGKGSKSGA----TFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEVMNEKDRCGSCAGRKTLS  212 (349)
Q Consensus       142 ~C~~C~G~G~~~~~----~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~g~g~~~  212 (349)
                      .|.+|+|.|.....    ...|..|+|.|.........++.. ..-..|..|+|.|+.+  .+.|..|++.++..
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~-~~c~~CH~~H~~~~~~--~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGN-LVCADCHAVHDMNVGQ--KPTCESCHDDGRTS   84 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTT-CCGGGTCCTTTSBTTC--CCCSTTTCSSCCCH
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCc-cccccCccccCCCCcC--CCccccccCCCccc
Confidence            59999999875532    357999999997433222222222 3456788888988766  78899999987653

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.78  E-value=0.68  Score=29.62  Aligned_cols=48  Identities=21%  Similarity=0.292  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcchHHHHHHH---HHHHHhc-cch-hhhhhhhccc
Q psy4972          20 EIKKAYRKLAKEFHPDKNPEAGDKFKEI---SFAYEVL-SDE-KKRATYDRYG   67 (349)
Q Consensus        20 ~Ik~ayr~l~~~~hPd~~~~~~~~f~~i---~~Ay~~L-~d~-~~r~~YD~~G   67 (349)
                      |.++||++|.+..+=+-.-.=++..++|   ..-|.+| +|| ++++.||.|-
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~   53 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL   53 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHh
Confidence            5789999999987655443334555543   2689999 577 7999999883

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=83.22  E-value=0.078  Score=37.57  Aligned_cols=42  Identities=21%  Similarity=0.591  Sum_probs=30.3

Q ss_pred             EeccCCCCCCCCCC----------CcccCCCCCccceEEEEEEecCccceEeeeeCCCCCCcceE
Q psy4972         141 VICSTCNGKGSKSG----------ATFTCASCRGCGFKIHHRIIGPNMTQQIQARCSDCQGEGEV  195 (349)
Q Consensus       141 ~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~  195 (349)
                      ..|..|+|++....          .-..|..|+|.|.             .+...|..|++.|+.
T Consensus        32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~-------------~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNV-------------GQKPTCESCHDDGRT   83 (90)
T ss_dssp             HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBT-------------TCCCCSTTTCSSCCC
T ss_pred             CcCcccCCCceeEeeccccccCccccccCccccCCCC-------------cCCCccccccCCCcc
Confidence            46999999986531          1246777888775             345689999999864