Psyllid ID: psy4

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MVRRGRSPSPVSSFHKMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGACAWEIKQFLQCANTQSDLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccHHcccccccccccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccEEccHHHHHHHHHHHcccccccccccccccccccccHHccccccccccccccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mvrrgrspspvssfhkmvrrgrspspvsrghsraspapaprptpatpapvqaqptmpapmaapqqgpGLMAQMAATAGGVAIGSAVGHtighavtgmfsgsdskeaapaapaapapayqqgsqsaaeptGACAWEIKQFLQCantqsdls
Flexible Loop (DISEMBL)
mvrrgrspspvssfhkmvrrgrspspvsrghsraspapaprptPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGACAWEIKQFLQCantqsdls
Low Complexity Region (SEG)
MvrrgrspspvssFHKMvrrgrspspvsrghsraspapaprptpatpapvqaqptmpapmaapqqgpgLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEaapaapaapapaYQQGSQSAAEPTGACAWEIKQFLQCANTQSDLS
Disordered region (IsUnstruct)
**************************************************************************ATAGGVAIGSAVGHTIGHAVTGM*****************************************************
Disordered Region (DISOPRED)
************************************************************************MAATAGGVAIGSAVGHTIGH*****************************************WEIKQFLQCANT*****
Disordered Region (DISEMBL)
*****************************************************PTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFS******************************GACAWEIKQFLQC********
Disordered Region (DISPRO)
**********************************************************************AQ***TA***AIGSA*GHTI***************************************GACAWEIKQFLQCANT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRRGRSPSPVSSFHKMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGACAWEIKQFLQCANTQSDLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q9D1L0	153	Coiled-coil-helix-coiled-	no	N/A	0.573	0.562	0.589	1e-19
Q8WYQ3	142	Coiled-coil-helix-coiled-	yes	N/A	0.526	0.556	0.595	5e-18
Q9Y6H1	151	Coiled-coil-helix-coiled-	no	N/A	0.553	0.549	0.555	5e-18
Q5T1J5	151	Putative coiled-coil-heli	no	N/A	0.553	0.549	0.566	8e-17
Q09254	154	Hemiasterlin resistant pr	yes	N/A	0.586	0.571	0.557	2e-15
Q03667	156	Mitochondrial intermembra	yes	N/A	0.753	0.724	0.374	3e-10
Q10307	172	Uncharacterized protein C	yes	N/A	0.513	0.447	0.372	5e-08

>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial OS=Mus musculus GN=Chchd2 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 67/95 (70%), Gaps = 9/95 (9%)

Query: 58  APMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPA 117
           +P AAP+Q PGLMAQMA TA GVA+GSAVGHT+GHA+TG FSG  S E     PA P   
Sbjct: 45  SPAAAPRQ-PGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAE-----PAKPDIT 98

Query: 118 YQ--QGSQSAAEPT-GACAWEIKQFLQCANTQSDL 149
           YQ  QG+Q   + + G C+ EIKQFL+CA  QSD+
Sbjct: 99  YQEPQGAQLQNQQSFGPCSLEIKQFLECAQNQSDV 133

Mus musculus (taxid: 10090)

>sp|Q8WYQ3|CHC10_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial OS=Homo sapiens GN=CHCHD10 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 58/84 (69%), Gaps = 5/84 (5%)

Query: 67  PGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAA 126
           PGLMAQMA TA GVA+GSAVGH +G A+TG FSG  S+ + PA   AP PA  Q  Q   
Sbjct: 42  PGLMAQMATTAAGVAVGSAVGHVMGSALTGAFSGGSSEPSQPAVQQAPTPAAPQPLQ--- 98

Query: 127 EPTGACAWEIKQFLQCANTQSDLS 150
              G CA+EI+QFL C+ TQSDLS
Sbjct: 99  --MGPCAYEIRQFLDCSTTQSDLS 120

Homo sapiens (taxid: 9606)

>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial OS=Homo sapiens GN=CHCHD2 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 7/90 (7%)

Query: 61  AAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQ 120
           AAP+Q PGLMAQMA TA GVA+GSAVGHT+GHA+TG FSG  + E     PA P   YQ+
Sbjct: 48  AAPRQ-PGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAE-----PARPDITYQE 101

Query: 121 -GSQSAAEPTGACAWEIKQFLQCANTQSDL 149
                 A+    C +EIKQFL+CA  Q D+
Sbjct: 102 PQGTQPAQQQQPCLYEIKQFLECAQNQGDI 131

Homo sapiens (taxid: 9606)

>sp|Q5T1J5|CHCH9_HUMAN Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial OS=Homo sapiens GN=CHCHD2P9 PE=5 SV=1

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 59/90 (65%), Gaps = 7/90 (7%)

Query: 61  AAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQ 120
           AAP+Q PGLMAQMA TA GVA+GSAVGHT GHAVTG FSG  + E     PA P  AYQ+
Sbjct: 48  AAPRQ-PGLMAQMATTAAGVAVGSAVGHTQGHAVTGGFSGGSNAE-----PARPDIAYQE 101

Query: 121 -GSQSAAEPTGACAWEIKQFLQCANTQSDL 149
                 A+    C + IKQFL+CA  Q D+
Sbjct: 102 PQGTQPAQQQQPCFYGIKQFLECAQNQGDI 131

Homo sapiens (taxid: 9606)

>sp|Q09254|HAR1_CAEEL Hemiasterlin resistant protein 1 OS=Caenorhabditis elegans GN=har-1 PE=4 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 7/95 (7%)

Query: 56  MPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPA 115
           M APM AP QGPGLM QMAATAGGVAIGSAVGH +G    GMF+G  S  A  A  AA A
Sbjct: 50  MGAPMGAPSQGPGLMKQMAATAGGVAIGSAVGHAVG----GMFTGGGSSHAEQAPAAAAA 105

Query: 116 PAYQQGSQSAAEPTGACAWEIKQFLQCANTQSDLS 150
           PA    +   ++P   C +E +QF+ CA  QSD+S
Sbjct: 106 PAGAPQASGYSQP---CEFEWRQFVDCAQNQSDVS 137

Caenorhabditis elegans (taxid: 6239)

>sp|Q03667|MIC17_YEAST Mitochondrial intermembrane space cysteine motif-containing protein MIC17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIC17 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 63/131 (48%), Gaps = 18/131 (13%)

Query: 28  SRGHSRASPAPAPRPTPATPAPVQAQPTM-------------PAPMAAPQQGPGLMAQMA 74
           SRG SR  P    RPT    A   A P               PA  A  +Q PG+ AQMA
Sbjct: 4   SRGSSR--PISRSRPTQTRSASTMAAPVHPQQQQQPNAYSHPPAAGAQTRQ-PGMFAQMA 60

Query: 75  ATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTG-ACA 133
           +TA GVA+GS +GHT+G  +TGMFSGS S ++AP        A   G     +  G  C 
Sbjct: 61  STAAGVAVGSTIGHTLGAGITGMFSGSGS-DSAPVEQQQQNMANTSGQTQTDQQLGRTCE 119

Query: 134 WEIKQFLQCAN 144
            + + F +C +
Sbjct: 120 IDARNFTRCLD 130

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10307|YD52_SCHPO Uncharacterized protein C6C3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6C3.02c PE=4 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 17/94 (18%)

Query: 67  PGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAA 126
           PG    + +TA GV IGSA+GHT+G  +TG FSGS S   APA  + P  +Y      AA
Sbjct: 55  PGFFGNLVSTAAGVGIGSAIGHTVGSVITGGFSGSGSNN-APADTSVPQSSYSNSVPEAA 113

Query: 127 ----------------EPTGACAWEIKQFLQCAN 144
                           E   AC  + K F  C N
Sbjct: 114 YGSAPPSTFASSAISEEAKNACKGDAKMFADCIN 147

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
157141896	139	hypothetical protein AaeL_AAEL015379 [Ae	0.606	0.654	0.744	3e-26
94468774	158	conserved possible Golgi protein [Aedes	0.613	0.582	0.741	3e-26
157134036	158	gamma-subunit,methylmalonyl-CoA decarbox	0.606	0.575	0.755	3e-25
170067752	158	conserved hypothetical protein [Culex qu	0.613	0.582	0.698	2e-24
322799693	141	hypothetical protein SINV_05574 [Solenop	0.806	0.858	0.566	2e-23
332372870	155	unknown [Dendroctonus ponderosae]	0.553	0.535	0.744	2e-22
240848675	145	coiled-coil-helix-coiled-coil-helix doma	0.826	0.855	0.558	3e-22
357620893	145	coiled-coil-helix-coiled-coil-helix doma	0.813	0.841	0.517	7e-22
347964707	154	AGAP000897-PA [Anopheles gambiae str. PE	0.573	0.558	0.689	1e-21
380015577	145	PREDICTED: coiled-coil-helix-coiled-coil	0.84	0.868	0.544	2e-21

>gi|157141896|ref|XP_001647767.1| hypothetical protein AaeL_AAEL015379 [Aedes aegypti] gi|108868088|gb|EAT32435.1| AAEL015379-PA [Aedes aegypti]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 76/94 (80%), Gaps = 3/94 (3%)

Query: 59  PMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAY 118
           PMAAP QGPGLMAQMAATAGGVAIGSAVGHT+GHA+TGMFSGSDSKEA P   AAP   Y
Sbjct: 29  PMAAPSQGPGLMAQMAATAGGVAIGSAVGHTVGHALTGMFSGSDSKEAVPQQQAAPVQQY 88

Query: 119 Q--QGSQSAAEPTGACAWEIKQFLQCANTQSDLS 150
               GS++ A P+G CAWEIKQFL CA  QSDL+
Sbjct: 89  APVAGSEAQA-PSGPCAWEIKQFLSCAQNQSDLT 121

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94468774|gb|ABF18236.1| conserved possible Golgi protein [Aedes aegypti]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 75/93 (80%), Gaps = 1/93 (1%)

Query: 59  PMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAY 118
           PMAAP QGPGLMAQMAATAGGVAIGSAVGHT+GHA+TGMFSGSDSKEA P   AAP   Y
Sbjct: 48  PMAAPSQGPGLMAQMAATAGGVAIGSAVGHTVGHALTGMFSGSDSKEAVPQQQAAPVQQY 107

Query: 119 QQGSQSAAE-PTGACAWEIKQFLQCANTQSDLS 150
              + S A+ P+G CAWEIKQFL CA  QSDL+
Sbjct: 108 APVAGSEAQAPSGPCAWEIKQFLSCAQNQSDLT 140

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134036|ref|XP_001656310.1| gamma-subunit,methylmalonyl-CoA decarboxylase, putative [Aedes aegypti] gi|108870637|gb|EAT34862.1| AAEL012939-PA [Aedes aegypti]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 77/94 (81%), Gaps = 3/94 (3%)

Query: 59  PMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAY 118
           PMAAP QGPGLMAQMAATAGGVAIGSAVGHT+GHA+TGMFSGSDSKEAAP   AAP   Y
Sbjct: 48  PMAAPSQGPGLMAQMAATAGGVAIGSAVGHTVGHALTGMFSGSDSKEAAPQQQAAPVQQY 107

Query: 119 Q--QGSQSAAEPTGACAWEIKQFLQCANTQSDLS 150
               GS++ A P+G CAWEIKQFL CA  QSDL+
Sbjct: 108 APVAGSETQA-PSGPCAWEIKQFLSCAQNQSDLT 140

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170067752|ref|XP_001868606.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167863826|gb|EDS27209.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 59  PMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKE-AAPAAPAAPAPA 117
           PMAAP QGPGLMAQMAATAGGVAIGSAVGHTIGHA+TGMFSGSDSKE A  A   AP P 
Sbjct: 48  PMAAPSQGPGLMAQMAATAGGVAIGSAVGHTIGHAMTGMFSGSDSKEAAPVAQAPAPVPQ 107

Query: 118 YQQGSQSAAEPTGACAWEIKQFLQCANTQSDLS 150
           Y   + + +   G C+WEIKQFL CA  Q DL+
Sbjct: 108 YAAAAPAESNAGGPCSWEIKQFLSCAQNQHDLT 140

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799693|gb|EFZ20925.1| hypothetical protein SINV_05574 [Solenopsis invicta]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 86/136 (63%), Gaps = 15/136 (11%)

Query: 17  MVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQ--QGPGLMAQMA 74
           M RRGR+  P  R           RP P T + V A     +PM APQ  Q P LM QMA
Sbjct: 1   MPRRGRAAPPPPR---------TVRPAPVTTSRVPAHAPPASPMVAPQAPQQPSLMGQMA 51

Query: 75  ATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGACAW 134
           ATAGGVAIGSAVGHTIGHA+TG+FSGS   EAAP    AP  + Q    SAA   GAC+W
Sbjct: 52  ATAGGVAIGSAVGHTIGHAMTGLFSGSG--EAAPDTAVAPQVSAQ--GTSAAPAAGACSW 107

Query: 135 EIKQFLQCANTQSDLS 150
           E+KQFL+CAN QSDLS
Sbjct: 108 ELKQFLECANNQSDLS 123

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372870|gb|AEE61577.1| unknown [Dendroctonus ponderosae]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 68/86 (79%), Gaps = 3/86 (3%)

Query: 65  QGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQS 124
           QGPGL  QMAATAGGVAIGSAVGHTIGHAVTGMFSG  S+ AAPAA  A   A   G   
Sbjct: 55  QGPGLFGQMAATAGGVAIGSAVGHTIGHAVTGMFSGGSSEAAAPAAAQAAPVA---GQSQ 111

Query: 125 AAEPTGACAWEIKQFLQCANTQSDLS 150
           A EP+G CAWEIKQFLQCA+TQSDL+
Sbjct: 112 AGEPSGPCAWEIKQFLQCASTQSDLT 137

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848675|ref|NP_001155450.1| coiled-coil-helix-coiled-coil-helix domain containing 2-like [Acyrthosiphon pisum] gi|239789256|dbj|BAH71264.1| ACYPI001924 [Acyrthosiphon pisum]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 84/136 (61%), Gaps = 12/136 (8%)

Query: 17  MVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPT-MPAPMAAPQQGPGLMAQMAA 75
           M RRGRSPSP  R     S  PA R     PAP QAQPT +     A  Q PGL AQMAA
Sbjct: 1   MARRGRSPSPAPR----RSSVPA-RTQQRAPAP-QAQPTQVAQAPQAQPQQPGLFAQMAA 54

Query: 76  TAGGVAIGSAVGHTIGHAVTGMFSGSDSK-EAAPAAPAAPAPAYQQGSQSAAEPTGACAW 134
           TAGGVA+GSA+GHT+GHAVTGMF G  S+ E  P    AP    +Q SQ      GACA+
Sbjct: 55  TAGGVAVGSAIGHTVGHAVTGMFGGGGSRDEVQPQVQQAPLMPMEQSSQQG----GACAF 110

Query: 135 EIKQFLQCANTQSDLS 150
           EIKQFLQCA    D+S
Sbjct: 111 EIKQFLQCAQNNDDIS 126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620893|gb|EHJ72917.1| coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like protein [Danaus plexippus]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 81/139 (58%), Gaps = 17/139 (12%)

Query: 17  MVRRGRSPSPVSRGHSRASPAPAPR----PTPATPAPVQAQPTMPAPMAAPQ-QGPGLMA 71
           M RRGRS          ASP PAP+    P P+   P QA P+ PAPMAA Q Q P L  
Sbjct: 1   MPRRGRS----------ASPPPAPQRRAAPPPSRNVPAQAPPSSPAPMAAAQPQQPSLFG 50

Query: 72  QMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGA 131
           QMAATAGGVA+GSAVGH  G A+TGMFSG  S+ A           Y Q      +P G 
Sbjct: 51  QMAATAGGVAVGSAVGHVAGSALTGMFSGGSSEPAQQQQAQPAQATYSQYQNQ--QPQGP 108

Query: 132 CAWEIKQFLQCANTQSDLS 150
           CAWEIKQF++CA  Q DLS
Sbjct: 109 CAWEIKQFIECAQQQHDLS 127

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964707|ref|XP_316875.5| AGAP000897-PA [Anopheles gambiae str. PEST] gi|333469471|gb|EAA12081.6| AGAP000897-PA [Anopheles gambiae str. PEST]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 65/87 (74%), Gaps = 1/87 (1%)

Query: 65  QGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQS 124
           QGPGLMAQMAATAGGVAIGSAVGHT+GHA+TGMFSGSDSKEAAP A A    A       
Sbjct: 50  QGPGLMAQMAATAGGVAIGSAVGHTVGHALTGMFSGSDSKEAAPVAAAPQQYAPAPAYPQ 109

Query: 125 AAE-PTGACAWEIKQFLQCANTQSDLS 150
                TG C+WE+KQFL CA  QSDL+
Sbjct: 110 QQAGETGPCSWEMKQFLSCAQNQSDLT 136

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015577|ref|XP_003691776.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like [Apis florea]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 81/134 (60%), Gaps = 8/134 (5%)

Query: 17  MVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAAT 76
           M RRGR+ +P  R   RA+      P      P    P     MA PQQ P LM QMAAT
Sbjct: 1   MPRRGRAANPPPRTVRRAAA-----PVATPAQPPAHAPAATPMMAQPQQ-PSLMGQMAAT 54

Query: 77  AGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGACAWEI 136
           AGGVAIGSAVGHTIGHAVTG+FSG  S E+A A  A           SAA   GACAWE+
Sbjct: 55  AGGVAIGSAVGHTIGHAVTGLFSGGGSSESAVAPAAPAVAQSA--PVSAAPIGGACAWEV 112

Query: 137 KQFLQCANTQSDLS 150
           KQFL+CAN QSDL+
Sbjct: 113 KQFLECANNQSDLT 126

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
UNIPROTKB|Q3ZCI0	153	CHCHD9 "Coiled-coil-helix-coil	0.506	0.496	0.547	1.1e-16
MGI|MGI:1261428	153	Chchd2 "coiled-coil-helix-coil	0.506	0.496	0.547	6e-16
UNIPROTKB|F1RIU9	153	CHCHD2 "Uncharacterized protei	0.506	0.496	0.547	7.7e-16
UNIPROTKB|Q9Y6H1	151	CHCHD2 "Coiled-coil-helix-coil	0.5	0.496	0.530	1.6e-15
UNIPROTKB|F1RL20	142	CHCHD10 "Uncharacterized prote	0.5	0.528	0.511	3.3e-15
UNIPROTKB|F1P0Q1	147	CHCHD2 "Uncharacterized protei	0.54	0.551	0.5	4.2e-15
UNIPROTKB|F1P579	131	CHCHD2 "Uncharacterized protei	0.54	0.618	0.5	4.2e-15
UNIPROTKB|A4IF72	143	CHCHD10 "Uncharacterized prote	0.493	0.517	0.517	6.9e-15
UNIPROTKB|E2RJF9	144	CHCHD10 "Uncharacterized prote	0.513	0.534	0.512	6.9e-15
RGD|1309819	154	Chchd2 "coiled-coil-helix-coil	0.506	0.493	0.523	6.9e-15

UNIPROTKB|Q3ZCI0 CHCHD9 "Coiled-coil-helix-coiled-coil-helix domain containing 9" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 46/84 (54%), Positives = 55/84 (65%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXXXXYQ--QGSQSAA 126
             LMAQMA TA GVA+GSAVGHT+GHA+TG FSG  S E            YQ  QG+Q A 
Sbjct:    55 LMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSSAEPSRPDIT-----YQEPQGTQPAQ 109

Query:   127 -EPTGACAWEIKQFLQCANTQSDL 149
              +  G C +E+KQFL+CA +Q DL
Sbjct:   110 LQQNGPCFYEVKQFLECAQSQGDL 133

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1261428 Chchd2 "coiled-coil-helix-coiled-coil-helix domain containing 2" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 46/84 (54%), Positives = 55/84 (65%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXXXXYQ--QGSQSAA 126
             LMAQMA TA GVA+GSAVGHT+GHA+TG FSG  S E            YQ  QG+Q   
Sbjct:    55 LMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDIT-----YQEPQGAQLQN 109

Query:   127 EPT-GACAWEIKQFLQCANTQSDL 149
             + + G C+ EIKQFL+CA  QSD+
Sbjct:   110 QQSFGPCSLEIKQFLECAQNQSDV 133

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1RIU9 CHCHD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 46/84 (54%), Positives = 53/84 (63%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXXXXYQ--QGSQSAA 126
             LMAQMA TA GVA+GSAVGHTIGHA+TG F G  S E            YQ  QG+Q A 
Sbjct:    55 LMAQMATTAAGVAVGSAVGHTIGHAITGGFGGGSSAEPSRPDIT-----YQEPQGAQPAQ 109

Query:   127 EPTGA-CAWEIKQFLQCANTQSDL 149
             +   A C +E+KQFL+CA  Q DL
Sbjct:   110 QQQMAPCFYEVKQFLECAQNQGDL 133

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9Y6H1 CHCHD2 "Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 44/83 (53%), Positives = 53/83 (63%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXXXXYQ--QGSQSAA 126
             LMAQMA TA GVA+GSAVGHT+GHA+TG FSG  + E            YQ  QG+Q A 
Sbjct:    55 LMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDIT-----YQEPQGTQPAQ 109

Query:   127 EPTGACAWEIKQFLQCANTQSDL 149
             +    C +EIKQFL+CA  Q D+
Sbjct:   110 QQQ-PCLYEIKQFLECAQNQGDI 131

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1RL20 CHCHD10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXXXXYQQGSQSAAEP 128
             LMAQMA+TA GVA+GSAVGH +G A+TG FSG  S+              Q  + +A +P
Sbjct:    44 LMAQMASTAAGVAVGSAVGHVVGSALTGAFSGGSSEPAQPAAQ-------QAPAHAAPQP 96

Query:   129 T--GACAWEIKQFLQCANTQSDLS 150
                G CA+EI+QFL C+ TQSDLS
Sbjct:    97 MQMGPCAYEIRQFLDCSTTQSDLS 120

GO:2000984 "negative regulation of ATP citrate synthase activity" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1P0Q1 CHCHD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/82 (50%), Positives = 48/82 (58%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXX-XXYQQGSQSAAE 127
             LMAQMA TA GVA+GSAVGHTIGHA+TG F G  S E              Q   Q   +
Sbjct:    47 LMAQMATTAAGVAVGSAVGHTIGHALTGGFGGGSSAEAARPDITYQEPQAAQPAYQQQQQ 106

Query:   128 PTGACAWEIKQFLQCANTQSDL 149
                 C +E+KQFL+CA  Q+DL
Sbjct:   107 QFAPCQYEMKQFLECAQNQTDL 128

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1P579 CHCHD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/82 (50%), Positives = 48/82 (58%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXX-XXYQQGSQSAAE 127
             LMAQMA TA GVA+GSAVGHTIGHA+TG F G  S E              Q   Q   +
Sbjct:    47 LMAQMATTAAGVAVGSAVGHTIGHALTGGFGGGSSAEAARPDITYQEPQAAQPAYQQQQQ 106

Query:   128 PTGACAWEIKQFLQCANTQSDL 149
                 C +E+KQFL+CA  Q+DL
Sbjct:   107 QFAPCQYEMKQFLECAQNQTDL 128

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A4IF72 CHCHD10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 44/85 (51%), Positives = 54/85 (63%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXXXXYQQGSQSAA-E 127
             LMAQMA TA GVA+GSAVGH +G A+TG FSG  S+              QQ  + AA +
Sbjct:    45 LMAQMATTAAGVAVGSAVGHVVGSALTGAFSGGSSEPAQPAA--------QQAPERAAPQ 96

Query:   128 PT--GACAWEIKQFLQCANTQSDLS 150
             P   G CA+EI+QFL C+ TQSDL+
Sbjct:    97 PLQMGPCAYEIRQFLDCSTTQSDLT 121

GO:2000984 "negative regulation of ATP citrate synthase activity" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RJF9 CHCHD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 42/82 (51%), Positives = 50/82 (60%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXXXXYQQGSQSAAEP 128
             LMAQMA+TA GVA+GSAVGH +G A+TG FSG  S+               Q  Q     
Sbjct:    46 LMAQMASTAAGVAVGSAVGHVVGSALTGAFSGGSSEPAQPAAQQAPTRTGPQPLQM---- 101

Query:   129 TGACAWEIKQFLQCANTQSDLS 150
              G CA+EI+QFL C+ TQSDLS
Sbjct:   102 -GPCAYEIRQFLDCSTTQSDLS 122

GO:2000984 "negative regulation of ATP citrate synthase activity" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1309819 Chchd2 "coiled-coil-helix-coiled-coil-helix domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 44/84 (52%), Positives = 54/84 (64%)

Query:    69 LMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEXXXXXXXXXXXXYQ--QGSQSAA 126
             LMAQMA TA GVA+GSAVGHT+GHA+TG FSG  + E            YQ  QG+    
Sbjct:    56 LMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGANAEPARPDIT-----YQEPQGAPLQN 110

Query:   127 EPT-GACAWEIKQFLQCANTQSDL 149
             + + G C+ EIKQFL+CA  QSD+
Sbjct:   111 QQSFGPCSLEIKQFLECAQNQSDV 134

GO:0005739 "mitochondrion" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09254	HAR1_CAEEL	No assigned EC number	0.5578	0.5866	0.5714	yes	N/A
Q03667	MIC17_YEAST	No assigned EC number	0.3740	0.7533	0.7243	yes	N/A
Q8WYQ3	CHC10_HUMAN	No assigned EC number	0.5952	0.5266	0.5563	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 23/109 (21%), Positives = 30/109 (27%), Gaps = 14/109 (12%)

Query: 30  GHSRASPAPAPRPTPATPA--------PVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVA 81
           G +   P  AP   P  P             Q     P  A       +   A TA GVA
Sbjct: 89  GGAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPGSFLGGAAQTAAGVA 148

Query: 82  IGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTG 130
            G  +G+ +      +F G      A    A        G   A +   
Sbjct: 149 GGMLLGNGL----ENLFGGHSQ--PAEIVDAIGEGGDGSGPAPADDTGI 191

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 26/111 (23%), Positives = 34/111 (30%)

Query: 21  GRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGV 80
               +  +   +  +PA A     A PAP  A    PAP  AP          A  A   
Sbjct: 397 AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456

Query: 81  AIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGA 131
              +A       A       + +   AP A  APA A    +  AA     
Sbjct: 457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 30/111 (27%), Positives = 40/111 (36%)

Query: 21  GRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGV 80
           G + +P +   S A+ APA  P PA  AP  A    PA    P   P       + AG  
Sbjct: 389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNA 448

Query: 81  AIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGA 131
             G A       A +   + + +    P A  APAP       +A     A
Sbjct: 449 PAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 28/116 (24%), Positives = 35/116 (30%)

Query: 16  KMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAA 75
                   P+P S G    +  PA    PA PA         AP  A       +A    
Sbjct: 593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEH 652

Query: 76  TAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGA 131
               VA+  A     G       +   +   APA  A  APA    +Q A  P   
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 32  SRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIG 91
           +   P P   P  A PA        P    AP Q P +    A+             T  
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Query: 92  -----HAVTGMFSGSDSKEAAPAAPAAPAPA 117
                  +      + +K++ PAA +   P 
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPV 452

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 39/115 (33%), Positives = 43/115 (37%), Gaps = 2/115 (1%)

Query: 3    RRGRSPSPVSSFHKMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAA 62
            R GR+    S   +  RR   P+  S       P P P P PA  A V A P  P P AA
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728

Query: 63   PQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPA 117
             Q  P L A  A  A  V  G A             +      A PAAPAA  P 
Sbjct: 2729 RQASPALPAAPAPPA--VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG4090|consensus	157		100.0
KOG4090|consensus	157		99.54
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	96.48
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	91.39
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	86.38

>KOG4090|consensus

Probab=100.00  E-value=2.4e-33  Score=218.30  Aligned_cols=95  Identities=52%  Similarity=0.710  Sum_probs=74.0

Q ss_pred             CCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhHhhhhhhccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCc
Q psy4             53 QPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGAC  132 (150)
Q Consensus        53 ~p~~~~~~a~~~~gpGl~~qmAstAaGvAvGsaVgH~ig~aitg~fsg~s~~~~~~~~q~~~~~~~~~~~q~~q~~~~~C  132 (150)
                      +|+..+.....+.+||||.|||+|++||+|||+|||+||++|||+|+|++++|++.++  ++|++++...+. .+++++|
T Consensus        42 ~Ps~~G~~~~~p~qPgl~aqMAtTaaGvavGsaVGHt~G~~iTg~Fsg~~~~ea~~~~--~~~~~p~g~~q~-~q~~~~C  118 (157)
T KOG4090|consen   42 APSAGGSPAFAPRQPGLMAQMATTAAGVAVGSAVGHTMGPAITGGFSGGSSHEAAVPD--ITYQAPAGSTQP-AQQQQPC  118 (157)
T ss_pred             CCCCCCCCCCCCCccHHHHHHHhhccchhccccccccccccccccccCCCCCCCCCcc--ccccccccccch-hhhcCch
Confidence            3444333333444599999999999999999999999999999999999888887776  455554432121 3456899


Q ss_pred             HHHHHHHHHHHHhc-CCCC
Q psy4            133 AWEIKQFLQCANTQ-SDLS  150 (150)
Q Consensus       133 ~~~~kqF~~C~~n~-~Di~  150 (150)
                      +||+|+|+||++|+ +||+
T Consensus       119 ~~e~kqF~dCa~~~~~d~s  137 (157)
T KOG4090|consen  119 FIEIKQFLDCAQNQGSDIS  137 (157)
T ss_pred             HHHHHHHHHHHHhcCcchH
Confidence            99999999999997 8985

>KOG4090|consensus

Probab=99.54  E-value=8.3e-15  Score=114.66  Aligned_cols=90  Identities=22%  Similarity=0.246  Sum_probs=63.1

Q ss_pred             CCCCCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhHhhhhhhccccCCCCCCCCCCCCCCCCCCCcccccccccc----
Q psy4             50 VQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSA----  125 (150)
Q Consensus        50 ~~~~p~~~~~~a~~~~gpGl~~qmAstAaGvAvGsaVgH~ig~aitg~fsg~s~~~~~~~~q~~~~~~~~~~~q~~----  125 (150)
                      .+.+|++|++|+.+..|         +++|++|||+|||.|+++|+|+++.+...+....++.+..+...+.++.|    
T Consensus        52 ~p~qPgl~aqMAtTaaG---------vavGsaVGHt~G~~iTg~Fsg~~~~ea~~~~~~~~~p~g~~q~~q~~~~C~~e~  122 (157)
T KOG4090|consen   52 APRQPGLMAQMATTAAG---------VAVGSAVGHTMGPAITGGFSGGSSHEAAVPDITYQAPAGSTQPAQQQQPCFIEI  122 (157)
T ss_pred             CCCccHHHHHHHhhccc---------hhccccccccccccccccccCCCCCCCCCccccccccccccchhhhcCchHHHH
Confidence            33447887777777666         99999999999999999999999887665444433222111222222223    


Q ss_pred             ---------C-CCCCCcHHHHHHHHHHHHhcCC
Q psy4            126 ---------A-EPTGACAWEIKQFLQCANTQSD  148 (150)
Q Consensus       126 ---------q-~~~~~C~~~~kqF~~C~~n~~D  148 (150)
                               + .++..|+||+++|++|.++.+.
T Consensus       123 kqF~dCa~~~~~d~slC~~f~e~Lk~Ck~~~~~  155 (157)
T KOG4090|consen  123 KQFLDCAQNQGSDISLCEGYNEMLKQCKKNSGL  155 (157)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcc
Confidence                     2 4678899999999999997643

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=96.48  E-value=0.019  Score=48.38  Aligned_cols=30  Identities=30%  Similarity=0.341  Sum_probs=25.4

Q ss_pred             CCChhHHHHHHhhhhhhhhhhHhhhhhhcc
Q psy4             65 QGPGLMAQMAATAGGVAIGSAVGHTIGHAV   94 (150)
Q Consensus        65 ~gpGl~~qmAstAaGvAvGsaVgH~ig~ai   94 (150)
                      +++|+|++++.||+|||-|..|+..|.++|
T Consensus       133 ~~ggFLg~A~~TAAGVAGG~lL~n~i~~lF  162 (247)
T PF09849_consen  133 APGGFLGGAAQTAAGVAGGMLLANGIESLF  162 (247)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            558999999999999999998888666544

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=91.39  E-value=0.24  Score=28.90  Aligned_cols=18  Identities=39%  Similarity=0.750  Sum_probs=14.1

Q ss_pred             cHHHHHHHHHHHHh-cCCC
Q psy4            132 CAWEIKQFLQCANT-QSDL  149 (150)
Q Consensus       132 C~~~~kqF~~C~~n-~~Di  149 (150)
                      |..++++|++|++. ++|+
T Consensus         1 C~~e~~~~~~Cl~~n~~~~   19 (35)
T PF06747_consen    1 CAEEMKAYLACLKENNFDW   19 (35)
T ss_dssp             THHHHHHHHHHHHCH-SST
T ss_pred             CHHHHHHHHHHHHHCCCcH
Confidence            88999999999984 4544

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.38  E-value=2.5  Score=35.42  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=26.2

Q ss_pred             CCCCCChhHHHHHHhhhhhhhhhhHhhhhhhcc
Q psy4             62 APQQGPGLMAQMAATAGGVAIGSAVGHTIGHAV   94 (150)
Q Consensus        62 ~~~~gpGl~~qmAstAaGvAvGsaVgH~ig~ai   94 (150)
                      ....+.|.+++.+.||+|||=|-.|+..|.+.|
T Consensus       131 ~~~r~ssFLG~AlqTAAGVAGGMlL~n~L~~mF  163 (233)
T COG3416         131 ANTRSSSFLGGALQTAAGVAGGMLLANGLEGMF  163 (233)
T ss_pred             cccccchhHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence            345678999999999999999988877665444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 14/113 (12%), Positives = 23/113 (20%)

Query: 19  RRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAG 78
           ++   P    +    A+P   P        P  A  +       PQ     M Q      
Sbjct: 5   KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64

Query: 79  GVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGA 131
                         ++  M   +       A      P          +   A
Sbjct: 65  AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
1ei0_A	38	P8MTCP1; helix-turn-helix, disulfide bridges, cell	95.47
1hp8_A	68	HU-P8; leukemia, cysteine motif; NMR {Homo sapiens	91.33

>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1

Probab=95.47  E-value=0.008  Score=36.16  Aligned_cols=21  Identities=14%  Similarity=0.265  Sum_probs=17.5

Q ss_pred             CCcHHHHHHHHHHHHh-cCCCC
Q psy4            130 GACAWEIKQFLQCANT-QSDLS  150 (150)
Q Consensus       130 ~~C~~~~kqF~~C~~n-~~Di~  150 (150)
                      ++|..+.+.|++||+. +.|++
T Consensus         1 dpC~~~a~a~q~CL~~n~~d~s   22 (38)
T 1ei0_A            1 DPCQKQAAEIQKCLQANSYLES   22 (38)
T ss_dssp             CCSHHHHHHHHHHHHHTTTCGG
T ss_pred             CchHHHHHHHHHHHHHCCCcHH
Confidence            4799999999999985 57764

>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A

Probab=91.33  E-value=0.085  Score=35.60  Aligned_cols=21  Identities=10%  Similarity=0.210  Sum_probs=17.6

Q ss_pred             CCCcHHHHHHHHHHHHh-cCCC
Q psy4            129 TGACAWEIKQFLQCANT-QSDL  149 (150)
Q Consensus       129 ~~~C~~~~kqF~~C~~n-~~Di  149 (150)
                      .++|..+.+.|++||+. +.|+
T Consensus         4 ~dPC~~~AcaiQ~CL~~N~yd~   25 (68)
T 1hp8_A            4 KDPCQKQACEIQKCLQANSYME   25 (68)
T ss_dssp             CCTTHHHHHHHHHHHHHTTTCH
T ss_pred             CCchHHHHHHHHHHHHHcCCcH
Confidence            36999999999999985 4664

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00