Psyllid ID: psy5015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccEEEEcccccEEEEccccccHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEcccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdgyacglkqdqfvlredgygqVVGRIKDMIIrggeniypkEIEEFIQTHPNVLEayaygvpdermgeeVGISIKLKENAKLNADDIRTFCKGK
Flexible Loop (DISEMBL)
mdgyacglkqdqfvlredgygqvvGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISiklkenaklnaddirtfckgk
Low Complexity Region (SEG)
MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK
Disordered region (IsUnstruct)
***YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE****************
Disordered Region (DISOPRED)
MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG*
Disordered Region (DISEMBL)
MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK
Disordered Region (DISPRO)
MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q0P4F7	606	Acyl-CoA synthetase famil	yes	N/A	0.840	0.130	0.571	3e-22
O31826	549	Putative acyl-CoA synthet	yes	N/A	0.893	0.153	0.535	5e-22
Q4R4Z9	618	Acyl-CoA synthetase famil	N/A	N/A	0.893	0.135	0.523	2e-21
Q96CM8	615	Acyl-CoA synthetase famil	yes	N/A	0.893	0.136	0.523	2e-21
Q8VCW8	615	Acyl-CoA synthetase famil	yes	N/A	0.893	0.136	0.547	3e-21
Q5R9G9	615	Acyl-CoA synthetase famil	yes	N/A	0.893	0.136	0.523	3e-21
Q499N5	615	Acyl-CoA synthetase famil	yes	N/A	0.851	0.130	0.537	3e-20
Q17QJ1	615	Acyl-CoA synthetase famil	yes	N/A	0.893	0.136	0.559	6e-20
Q9SMT7	514	4-coumarate--CoA ligase-l	yes	N/A	0.797	0.145	0.466	2e-16
Q0K844	509	Probable sulfoacetate--Co	no	N/A	0.787	0.145	0.459	7e-14

>sp|Q0P4F7|ACSF2_DANRE Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 5/84 (5%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQF      Y ++ GRIKD+IIRGGENIYP EIE+F+ THP +LEA   GV DERMGEEV
Sbjct: 489 DQF-----AYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEV 543

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              I+LKE  +   ++I+ +CKGK
Sbjct: 544 CACIRLKEGQECTVEEIKAYCKGK 567

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|O31826|YNGI_BACSU Putative acyl-CoA synthetase YngI OS=Bacillus subtilis (strain 168) GN=yngI PE=3 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 61/84 (72%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V+ EDGY ++ GR+KDM+IRGGENIYP+EIEEF+  HP VL+    GVPD + GEE 
Sbjct: 423 DLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKFGEEA 482

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              IKLK+   ++ D+++ +CKGK
Sbjct: 483 AAWIKLKDGKSVSPDELKAYCKGK 506

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q4R4Z9|ACSF2_MACFA Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 59/84 (70%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct: 496 DIATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEI 555

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              I+LK+  +  A++++ FCKGK
Sbjct: 556 CACIRLKDGEETTAEEMKAFCKGK 579

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q96CM8|ACSF2_HUMAN Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 58/84 (69%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct: 493 DVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEI 552

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              I+LK+  +   ++I+ FCKGK
Sbjct: 553 CACIRLKDGEETTVEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VCW8|ACSF2_MOUSE Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  ++ E G+ ++VGR KDMIIRGGENIYP E+E+F   HP V EA   GV DERMGEE+
Sbjct: 493 DIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEI 552

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              I+LK      A++I+ FCKGK
Sbjct: 553 CACIRLKSGETTTAEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9G9|ACSF2_PONAB Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 58/84 (69%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct: 493 DVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEI 552

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              I+LK+  +   ++I+ FCKGK
Sbjct: 553 CACIRLKDGEETTVEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q499N5|ACSF2_RAT Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 55/80 (68%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           + E G+ ++VGR KDMIIRGGENIYP E+E+F   HP V EA   GV D+RMGEE+   I
Sbjct: 497 MDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHPQVQEAQVVGVKDDRMGEEICACI 556

Query: 75  KLKENAKLNADDIRTFCKGK 94
           +LK       ++I+ FCKGK
Sbjct: 557 RLKSGETTTEEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q17QJ1|ACSF2_BOVIN Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 60/84 (71%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  ++ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct: 493 DIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEI 552

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              I+LKE  K  A++I+ FCKGK
Sbjct: 553 CACIRLKEGEKTTAEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SMT7|4CLLA_ARATH 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 52/75 (69%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
           DGY  +VGRIK++I RGGE I P E++  + THP+V +  A+GVPDE+ GEE+  ++  +
Sbjct: 401 DGYLHLVGRIKELINRGGEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPR 460

Query: 78  ENAKLNADDIRTFCK 92
           E   +  +DI+ FCK
Sbjct: 461 EGTTVTEEDIKAFCK 475

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q0K844|SAUT_CUPNH Probable sulfoacetate--CoA ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauT PE=2 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 49/74 (66%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
           DGY  + GR K++II+GGENI P+EI+E +  HP VLEA A GVPD   G+E+   + ++
Sbjct: 400 DGYFYISGRAKELIIKGGENIAPREIDEALLRHPGVLEAAAVGVPDPAYGQEIVAYVVMR 459

Query: 78  ENAKLNADDIRTFC 91
           E A+ +   +R  C
Sbjct: 460 EAARCDDAALRAHC 473

Catalyzes the CoA- and ATP-dependent conversion of sulfoacetate to sulfoacetyl-CoA and AMP.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
189240709	575	PREDICTED: similar to CG12512 CG12512-PA	0.893	0.146	0.630	8e-27
157130154	1017	AMP dependent coa ligase [Aedes aegypti]	0.893	0.082	0.635	3e-26
242010698	582	firefly luciferase, putative [Pediculus	0.893	0.144	0.607	4e-25
157106378	586	AMP dependent coa ligase [Aedes aegypti]	0.893	0.143	0.588	5e-25
157106380	382	AMP dependent coa ligase [Aedes aegypti]	0.882	0.217	0.630	1e-24
170028425	853	acetyl-coenzyme A synthetase [Culex quin	0.893	0.098	0.588	1e-24
403183212	894	AAEL017299-PA [Aedes aegypti]	0.893	0.093	0.586	2e-24
170028419	574	2-succinylbenzoate-CoA ligase [Culex qui	0.893	0.146	0.6	2e-24
157106384	597	AMP dependent coa ligase [Aedes aegypti]	0.893	0.140	0.586	2e-24
328718816	595	PREDICTED: acyl-CoA synthetase family me	0.893	0.141	0.583	3e-24

>gi|189240709|ref|XP_001813711.1| PREDICTED: similar to CG12512 CG12512-PA [Tribolium castaneum] gi|270013541|gb|EFA09989.1| hypothetical protein TcasGA2_TC012154 [Tribolium castaneum]

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/84 (63%), Positives = 69/84 (82%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQF+L EDGYG+VVGR+K+MIIRGGENI+PKEIEEF+ +HPN+LE +  G+P ER+GEEV
Sbjct: 457 DQFILEEDGYGKVVGRLKEMIIRGGENIFPKEIEEFLNSHPNILETHVIGLPHERLGEEV 516

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              I++K   K+  DD+ +FCKGK
Sbjct: 517 CACIRVKPGTKVTFDDMVSFCKGK 540

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130154|ref|XP_001661845.1| AMP dependent coa ligase [Aedes aegypti] gi|108872001|gb|EAT36226.1| AAEL011676-PA [Aedes aegypti]

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/85 (63%), Positives = 70/85 (82%), Gaps = 1/85 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQFVLREDGYG++VGRIK++IIRGGENI+P+EIE+++ THP VLE +  GVPD RMGEE+
Sbjct: 892 DQFVLREDGYGKIVGRIKEIIIRGGENIFPREIEDYLNTHPKVLETHCVGVPDSRMGEEI 951

Query: 71  GISIKLKENAK-LNADDIRTFCKGK 94
              ++LKE  + L  D+I+ FCKGK
Sbjct: 952 CAFVRLKEEWQMLTFDEIKDFCKGK 976

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010698|ref|XP_002426097.1| firefly luciferase, putative [Pediculus humanus corporis] gi|212510130|gb|EEB13359.1| firefly luciferase, putative [Pediculus humanus corporis]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 68/84 (80%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQFVL E+GYG++VGR KD+IIRGGENIYP +IEEF+ THP++LEA   G+PD R+GE+V
Sbjct: 457 DQFVLLENGYGKIVGRKKDLIIRGGENIYPADIEEFLSTHPDILEAQVVGLPDPRLGEQV 516

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              I+LK N+ L  ++++ FCKGK
Sbjct: 517 CACIRLKPNSFLTEEEVKEFCKGK 540

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106378|ref|XP_001649296.1| AMP dependent coa ligase [Aedes aegypti] gi|108868852|gb|EAT33077.1| AAEL014664-PA [Aedes aegypti]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 71/85 (83%), Gaps = 1/85 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQF LREDGYG++VGR+K+M+IRGGENIYPKE+E+F+ THP +LE +  GVPDERMGEE+
Sbjct: 459 DQFQLREDGYGKIVGRMKEMVIRGGENIYPKELEDFLCTHPKILETHCIGVPDERMGEEI 518

Query: 71  GISIKLKENA-KLNADDIRTFCKGK 94
              ++L++++  L+  +++ FCKGK
Sbjct: 519 CAYVRLQDSSMSLDHAEMKAFCKGK 543

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106380|ref|XP_001649297.1| AMP dependent coa ligase [Aedes aegypti] gi|108868853|gb|EAT33078.1| AAEL014663-PA [Aedes aegypti]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 69/84 (82%), Gaps = 1/84 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQFVLREDGYG++VGRIK++IIRGGENI+P+EIE+++ THP VLE +  GVPD RMGEE+
Sbjct: 257 DQFVLREDGYGKIVGRIKEIIIRGGENIFPREIEDYLNTHPKVLETHCVGVPDSRMGEEI 316

Query: 71  GISIKLKENAK-LNADDIRTFCKG 93
              ++LKE  + L  D+I+ FCKG
Sbjct: 317 CAFVRLKEEGQMLTFDEIKDFCKG 340

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028425|ref|XP_001842096.1| acetyl-coenzyme A synthetase [Culex quinquefasciatus] gi|167874251|gb|EDS37634.1| acetyl-coenzyme A synthetase [Culex quinquefasciatus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 73/85 (85%), Gaps = 1/85 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQFVLREDGYG++VGRIK+M+IRGGENIYPKEIE+F+ +HP +LE +  GVPDERMGEE+
Sbjct: 731 DQFVLREDGYGKIVGRIKEMVIRGGENIYPKEIEDFLNSHPKILETHCVGVPDERMGEEI 790

Query: 71  GISIKLKENAK-LNADDIRTFCKGK 94
              ++L+++++ ++  +++ FC+GK
Sbjct: 791 CAFVRLRDSSQTMDRAELKDFCQGK 815

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403183212|gb|EJY57933.1| AAEL017299-PA [Aedes aegypti]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 70/87 (80%), Gaps = 3/87 (3%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQFVL ++GYG VVGRIK++IIRGGEN+YPKEIE+ + THP++LEAY  GVPDER+ EE+
Sbjct: 769 DQFVLSQNGYGTVVGRIKEVIIRGGENVYPKEIEDILNTHPHLLEAYCIGVPDERLVEEI 828

Query: 71  GISIKLKENA---KLNADDIRTFCKGK 94
              +++KE A    ++ D+I+ FC+GK
Sbjct: 829 CAFVRVKETAPKGAIDLDEIKQFCQGK 855

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028419|ref|XP_001842093.1| 2-succinylbenzoate-CoA ligase [Culex quinquefasciatus] gi|167874248|gb|EDS37631.1| 2-succinylbenzoate-CoA ligase [Culex quinquefasciatus]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/85 (60%), Positives = 71/85 (83%), Gaps = 1/85 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQFVLR DGYG++VGRIK++IIRGGENIYP+EIE+ + THP +LE++  GVP+ER+GEEV
Sbjct: 448 DQFVLRPDGYGRIVGRIKELIIRGGENIYPREIEDVLNTHPAILESHCIGVPNERLGEEV 507

Query: 71  GISIKLKE-NAKLNADDIRTFCKGK 94
              I+LK+ +  ++ ++IR+FCK K
Sbjct: 508 CAYIRLKDSDGMIDMEEIRSFCKFK 532

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106384|ref|XP_001649299.1| AMP dependent coa ligase [Aedes aegypti] gi|108868855|gb|EAT33080.1| AAEL014662-PA [Aedes aegypti]

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 70/87 (80%), Gaps = 3/87 (3%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQFVL ++GYG VVGRIK++IIRGGEN+YPKEIE+ + THP++LEAY  GVPDER+ EE+
Sbjct: 473 DQFVLSQNGYGTVVGRIKEVIIRGGENVYPKEIEDILNTHPHLLEAYCIGVPDERLVEEI 532

Query: 71  GISIKLKENA---KLNADDIRTFCKGK 94
              +++KE A    ++ D+I+ FC+GK
Sbjct: 533 CAFVRVKETAPKGAIDLDEIKQFCQGK 559

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718816|ref|XP_001945665.2| PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like [Acyrthosiphon pisum]

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 66/84 (78%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQFVL EDGYG  VGR+K+MIIRGGEN++PKEIE F+++HP++ +   YG+PD+RMGEEV
Sbjct: 470 DQFVLYEDGYGNHVGRLKEMIIRGGENLFPKEIEYFLESHPSISQVQVYGIPDDRMGEEV 529

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
             S+ +KE A +   DI+ + KGK
Sbjct: 530 CASVIVKEGAAVTEADIKAYSKGK 553

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
FB|FBgn0031703	593	CG12512 [Drosophila melanogast	0.893	0.141	0.551	2e-22
UNIPROTKB|G1K208	614	ACSF2 "Acyl-CoA synthetase fam	0.893	0.136	0.559	9.3e-21
UNIPROTKB|Q17QJ1	615	ACSF2 "Acyl-CoA synthetase fam	0.893	0.136	0.559	9.3e-21
TIGR_CMR|GSU_1103	552	GSU_1103 "long-chain-fatty-aci	0.893	0.152	0.523	1.2e-20
UNIPROTKB|Q5LQG2	571	SPO2528 "AMP-binding enzyme" [	0.893	0.147	0.523	1.3e-20
TIGR_CMR|SPO_2528	571	SPO_2528 "AMP-binding enzyme"	0.893	0.147	0.523	1.3e-20
UNIPROTKB|E1BS15	589	ACSF2 "Uncharacterized protein	0.893	0.142	0.583	1.4e-20
UNIPROTKB|E1BVI3	593	ACSF2 "Uncharacterized protein	0.893	0.141	0.583	1.4e-20
ZFIN|ZDB-GENE-060825-7	606	acsf2 "acyl-CoA synthetase fam	0.851	0.132	0.575	3.1e-20
UNIPROTKB|F1RT96	609	ACSF2 "Uncharacterized protein	0.893	0.137	0.547	3.2e-20

FB|FBgn0031703 CG12512 [Drosophila melanogaster (taxid:7227)]

 Score = 268 (99.4 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 48/87 (55%), Positives = 67/87 (77%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             DQFVL  +GYG++VGR+K+M+IRGGENI+PKEIE+F+  HP V+EA+  GVPDER+GEEV
Sbjct:   462 DQFVLEANGYGRIVGRLKEMLIRGGENIFPKEIEDFLNAHPQVIEAHVIGVPDERLGEEV 521

Query:    71 GISIKLKEN---AKLNADDIRTFCKGK 94
                ++L+E    A   A+ ++ + KGK
Sbjct:   522 CAYVRLEEGVDPASFTAETLKAYAKGK 548

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|G1K208 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 253 (94.1 bits), Expect = 9.3e-21, P = 9.3e-21
 Identities = 47/84 (55%), Positives = 60/84 (71%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             D  ++ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct:   492 DIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEI 551

Query:    71 GISIKLKENAKLNADDIRTFCKGK 94
                I+LKE  K  A++I+ FCKGK
Sbjct:   552 CACIRLKEGEKTTAEEIKAFCKGK 575

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q17QJ1 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 253 (94.1 bits), Expect = 9.3e-21, P = 9.3e-21
 Identities = 47/84 (55%), Positives = 60/84 (71%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             D  ++ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct:   493 DIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEI 552

Query:    71 GISIKLKENAKLNADDIRTFCKGK 94
                I+LKE  K  A++I+ FCKGK
Sbjct:   553 CACIRLKEGEKTTAEEIKAFCKGK 576

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

TIGR_CMR|GSU_1103 GSU_1103 "long-chain-fatty-acid--CoA ligase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 251 (93.4 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 44/84 (52%), Positives = 62/84 (73%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             D  V+ E+GY ++ GRIK+MIIRGGENIYP+EIEEF+ THP + +   YGVPD + GE+V
Sbjct:   423 DLAVMDENGYCKITGRIKNMIIRGGENIYPREIEEFLYTHPKISDVQIYGVPDRKYGEQV 482

Query:    71 GISIKLKENAKLNADDIRTFCKGK 94
               ++ LK+   +  +D+R FC+GK
Sbjct:   483 MAAVILKKGDTMTEEDVRDFCRGK 506

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

UNIPROTKB|Q5LQG2 SPO2528 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 251 (93.4 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 44/84 (52%), Positives = 62/84 (73%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             D  VL  DG+  + GR+KDMIIRGGENIYP+EIEEF+  HP++ E   +G+PD RMGEEV
Sbjct:   444 DLAVLDADGFCTITGRVKDMIIRGGENIYPREIEEFLFGHPDIKEVQVFGIPDARMGEEV 503

Query:    71 GISIKLKENAKLNADDIRTFCKGK 94
                +  K   +++A+D+RT+C+G+
Sbjct:   504 CAWVVAKPGCEISAEDVRTYCRGQ 527

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2528 SPO_2528 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 251 (93.4 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 44/84 (52%), Positives = 62/84 (73%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             D  VL  DG+  + GR+KDMIIRGGENIYP+EIEEF+  HP++ E   +G+PD RMGEEV
Sbjct:   444 DLAVLDADGFCTITGRVKDMIIRGGENIYPREIEEFLFGHPDIKEVQVFGIPDARMGEEV 503

Query:    71 GISIKLKENAKLNADDIRTFCKGK 94
                +  K   +++A+D+RT+C+G+
Sbjct:   504 CAWVVAKPGCEISAEDVRTYCRGQ 527

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016208 "AMP binding" evidence=ISS

UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 49/84 (58%), Positives = 57/84 (67%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             D   L E GY +++GR KDMIIRGGENIYP EIE+F+ THP V E    GV D RMGEEV
Sbjct:   467 DIATLDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGVKDSRMGEEV 526

Query:    71 GISIKLKENAKLNADDIRTFCKGK 94
                I+L+      ADDI+ FCKGK
Sbjct:   527 CACIRLRAGQSCAADDIKAFCKGK 550

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BVI3 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 49/84 (58%), Positives = 57/84 (67%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             D   L E GY +++GR KDMIIRGGENIYP EIE+F+ THP V E    GV D RMGEEV
Sbjct:   467 DIATLDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGVKDSRMGEEV 526

Query:    71 GISIKLKENAKLNADDIRTFCKGK 94
                I+L+      ADDI+ FCKGK
Sbjct:   527 CACIRLRAGQSCAADDIKAFCKGK 550

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-060825-7 acsf2 "acyl-CoA synthetase family member 2" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 46/80 (57%), Positives = 59/80 (73%)

Query:    15 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
             L +  Y ++ GRIKD+IIRGGENIYP EIE+F+ THP +LEA   GV DERMGEEV   I
Sbjct:   488 LDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACI 547

Query:    75 KLKENAKLNADDIRTFCKGK 94
             +LKE  +   ++I+ +CKGK
Sbjct:   548 RLKEGQECTVEEIKAYCKGK 567

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

UNIPROTKB|F1RT96 ACSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 248 (92.4 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 46/84 (54%), Positives = 59/84 (70%)

Query:    11 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
             D  V+ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V +    GV D RMGEE+
Sbjct:   487 DIAVMDEQGFCRIVGRAKDMIIRGGENIYPAELEDFFHTHPQVQDVQVVGVKDNRMGEEI 546

Query:    71 GISIKLKENAKLNADDIRTFCKGK 94
                I+LK+  K  A++I+ FCKGK
Sbjct:   547 CACIRLKKGEKTTAEEIKAFCKGK 570

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96CM8	ACSF2_HUMAN	6, ., 2, ., 1, ., -	0.5238	0.8936	0.1365	yes	N/A
Q8VCW8	ACSF2_MOUSE	6, ., 2, ., 1, ., -	0.5476	0.8936	0.1365	yes	N/A
Q0P4F7	ACSF2_DANRE	6, ., 2, ., 1, ., -	0.5714	0.8404	0.1303	yes	N/A
Q17QJ1	ACSF2_BOVIN	6, ., 2, ., 1, ., -	0.5595	0.8936	0.1365	yes	N/A
O31826	YNGI_BACSU	6, ., 2, ., 1, ., -	0.5357	0.8936	0.1530	yes	N/A
Q499N5	ACSF2_RAT	6, ., 2, ., 1, ., -	0.5375	0.8510	0.1300	yes	N/A
Q5R9G9	ACSF2_PONAB	6, ., 2, ., 1, ., -	0.5238	0.8936	0.1365	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	94
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	9e-42
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	4e-40
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-29
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-29
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-28
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	8e-28
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	8e-28
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	3e-27
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	5e-27
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-24
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-23
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-23
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-23
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-22
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-21
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-21
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	9e-21
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	1e-20
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-20
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-20
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	6e-20
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-19
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	5e-19
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-18
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-18
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-18
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-18
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-18
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	5e-18
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-17
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-17
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-17
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	3e-17
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-17
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-17
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	5e-17
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-16
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	1e-16
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-16
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-16
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-16
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	4e-16
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	7e-16
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-15
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-15
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-15
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	3e-15
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-15
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-15
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	4e-15
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-15
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	5e-15
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	7e-15
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-14
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	4e-14
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-14
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	6e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	7e-14
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-13
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	8e-13
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-12
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-12
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-12
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	5e-12
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	9e-12
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-11
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-11
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-10
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-10
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-10
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	3e-10
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-10
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-10
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	5e-10
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-10
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-09
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-09
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-09
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-09
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-09
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	3e-09
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-09
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	4e-09
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	4e-09
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	6e-09
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	6e-09
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	6e-09
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	8e-09
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-08
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-08
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-08
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-08
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-08
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	4e-08
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	5e-08
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	6e-08
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	7e-08
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	9e-08
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	9e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	1e-07
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-07
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-07
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	7e-07
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	1e-06
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	6e-05
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-04
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	4e-04
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	4e-04
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-04
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	5e-04
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	7e-04
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	7e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	0.001
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	0.003
TIGR02155	422	TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase	0.004

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  142 bits (361), Expect = 9e-42
 Identities = 48/81 (59%), Positives = 60/81 (74%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
           V+ E+GY  +VGRIKDMIIRGGENIYP+EIEEF+ THP + +    GVPDE+ GEEV   
Sbjct: 436 VMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAW 495

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           I L+  A L  +D+R FC+GK
Sbjct: 496 IILRPGATLTEEDVRDFCRGK 516

Length = 559

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  134 bits (341), Expect = 4e-40
 Identities = 48/84 (57%), Positives = 59/84 (70%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   + EDGY ++VGRIKDMIIRGGENIYP EIEE + THP V EA   GVPDER+GE V
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVV 293

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              + LK  A L  +++  FC+G+
Sbjct: 294 AAFVVLKPGATLTEEELIAFCRGR 317

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  108 bits (273), Expect = 1e-29
 Identities = 40/76 (52%), Positives = 50/76 (65%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY  +V R KDMII GG N+YP+EIEE + +HP VLEA   GVPD   GE V   + L
Sbjct: 361 EDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVL 420

Query: 77  KENAKLNADDIRTFCK 92
           KE A L  +++  FC+
Sbjct: 421 KEGASLTEEELIAFCR 436

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  109 bits (273), Expect = 2e-29
 Identities = 42/84 (50%), Positives = 58/84 (69%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   + E GY ++VGR KDMIIRGGENIYP+EIEEF+ THP V +   +GVPDE+ GEE+
Sbjct: 434 DLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI 493

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              ++L      + +++R FCK +
Sbjct: 494 VAWVRLHPGHAASEEELREFCKAR 517

Length = 558

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  103 bits (260), Expect = 3e-28
 Identities = 37/78 (47%), Positives = 49/78 (62%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY  +V R KDMII GGENIYP E+E  +  HP V +    GVPDE  GE V   + L
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294

Query: 77  KENAKLNADDIRTFCKGK 94
           +  A L+A+++  FC+ +
Sbjct: 295 RPGATLDAEELIAFCRER 312

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  104 bits (261), Expect = 8e-28
 Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 2/86 (2%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   + EDGY  +VGR+KD+II GGENIYP+EIE  +  HP V EA   GVPDER GE V
Sbjct: 407 DLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERV 466

Query: 71  GISIKLKE--NAKLNADDIRTFCKGK 94
              + LK   +A+L A+++R F + +
Sbjct: 467 VAVVVLKPGGDAELTAEELRAFLRKR 492

Length = 534

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  102 bits (256), Expect = 8e-28
 Identities = 38/82 (46%), Positives = 55/82 (67%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   L EDGY  + GRIK++I RGGE I P+E+EE +  HP V EA  +GVPDE  GEEV
Sbjct: 231 DLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEV 290

Query: 71  GISIKLKENAKLNADDIRTFCK 92
             ++ L+ ++K+  +++R F +
Sbjct: 291 AAAVVLRADSKVTIEELRDFAR 312

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  102 bits (256), Expect = 3e-27
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   +  DGY +VVGRIKD I RGGE I P+EIE  + +HP V +A   G+PDE +GE +
Sbjct: 370 DLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERI 429

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              +  +  A     ++R F + +
Sbjct: 430 CAFVVPRGGAAPTLAELRAFLREQ 453

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  101 bits (255), Expect = 5e-27
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
            + EDGY  +  RIKD+II GGENIYP+E+E+ +  HP V E    GVPDE+ GE     
Sbjct: 404 YIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV 463

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           + LK  A L+A ++R F +G+
Sbjct: 464 VVLKPGATLDAKELRAFLRGR 484

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 94.6 bits (236), Expect = 2e-24
 Identities = 36/79 (45%), Positives = 49/79 (62%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
            L E+GY  +V R KDM I GG N+YP E+EE +  HP V EA   GVPDER+GE     
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY 460

Query: 74  IKLKENAKLNADDIRTFCK 92
           + LK  A+L  +++  +C+
Sbjct: 461 VVLKPGAELTEEELIAYCR 479

Length = 513

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 92.3 bits (230), Expect = 1e-23
 Identities = 32/81 (39%), Positives = 44/81 (54%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
            L  DGY ++ GR KD+IIRGGENI  +EIE+ +  HP V E     +PDER+GE V   
Sbjct: 325 RLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAV 384

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           +     A L   ++      +
Sbjct: 385 VVPAPGASLTLAELTEHLAAQ 405

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 90.8 bits (226), Expect = 2e-23
 Identities = 33/82 (40%), Positives = 47/82 (57%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   L E+GY  + GR KD+I  GGEN+YP E+E  +  HP V EA   GVPDE  GE +
Sbjct: 230 DLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERI 289

Query: 71  GISIKLKENAKLNADDIRTFCK 92
              + L+  A   A++++   +
Sbjct: 290 VAFVVLRPGADALAEELKAHLR 311

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 90.4 bits (225), Expect = 5e-23
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 14  VLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 72
           V+ EDGY +++GR  D II+ GG  +   EIEE +  HP V E    GVPD   GE V  
Sbjct: 323 VVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVA 382

Query: 73  SIKLKENAKLNADDIRTFCKGK 94
            +  +  A L   ++R + + K
Sbjct: 383 VVVPEAGAALTLAELRAWAREK 404

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 88.8 bits (221), Expect = 2e-22
 Identities = 31/84 (36%), Positives = 42/84 (50%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D+    EDG+   V R KD I R GENI   E+E  I  HP V EA    VP E   +EV
Sbjct: 308 DRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEV 367

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              + L+    L+ + +  FC+ +
Sbjct: 368 KAVVVLRPGETLDPEALLEFCRDR 391

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 87.0 bits (216), Expect = 1e-21
 Identities = 34/84 (40%), Positives = 54/84 (64%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V+ EDG+ ++V RIK++II GG N+YP E+EE ++ HP V +A   G+P E   EEV
Sbjct: 451 DVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEV 510

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
             ++ L+  A L+ + +R +C+  
Sbjct: 511 VAAVVLEPGAALDPEGLRAYCREH 534

Length = 573

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.6 bits (215), Expect = 2e-21
 Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
           V+ E GY ++V R KDMI+  G N+YP EIEE + +HP VLE  A GVPDE  GE V + 
Sbjct: 444 VMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLF 503

Query: 74  IKLKENAKLNADDIRTFCK 92
           + +K++  L  +D++ FCK
Sbjct: 504 V-VKKDPALTEEDVKAFCK 521

Length = 557

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 84.9 bits (210), Expect = 5e-21
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 18  DGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 75
           D  G V   GR+ DMII GGENI+P E+E  +   P V E    G+PDER G+ V   + 
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVV 446

Query: 76  LKENAKLNADDIRTFC 91
            +E   L+AD + TFC
Sbjct: 447 PREGETLSADALDTFC 462

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 84.2 bits (209), Expect = 9e-21
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
            +GY  V+GR  D+II GGENIYP+EIE  +  HP V EA   GVPD+  G+     +  
Sbjct: 300 AEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVP 359

Query: 77  KENAKLNADDIRTFCKGK 94
             +  ++ ++++ F   K
Sbjct: 360 -NDDPVSVEELQAFLADK 376

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 84.2 bits (209), Expect = 1e-20
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDG   V GR  DMI+ GGEN++P E+E+ +  HP+V+EA   GV DE  G+ +   +  
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498

Query: 77  KENAKLNADDIRTFCKGK 94
              A L+ D I+ + +  
Sbjct: 499 APGAALDEDAIKDYVRDN 516

Length = 549

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.9 bits (205), Expect = 3e-20
 Identities = 30/82 (36%), Positives = 49/82 (59%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  +++EDGY ++V R KDMI+  G N+YP E+E+ +   P VL+  A GVPDE+ GE +
Sbjct: 439 DIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAI 498

Query: 71  GISIKLKENAKLNADDIRTFCK 92
            + + +K    L  + +    +
Sbjct: 499 KVFVVVKPGETLTKEQVMEHMR 520

Length = 562

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 82.6 bits (204), Expect = 4e-20
 Identities = 30/76 (39%), Positives = 41/76 (53%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDG+  +VGR K+MII GGENIYP E+E+ I    +V E    G    + GE     I  
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442

Query: 77  KENAKLNADDIRTFCK 92
           K ++ L   D+   C+
Sbjct: 443 KSSSVLIEKDVIEHCR 458

Length = 496

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 82.0 bits (203), Expect = 6e-20
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDG+  +V R KDMI+ GG N++P+E+E+ +  HP V +    GVPDE+ GE V   + L
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVL 464

Query: 77  KENAKLNADDIRTFCK 92
           +  A ++A +++   K
Sbjct: 465 RPGAAVDAAELQAHVK 480

Length = 524

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 81.5 bits (202), Expect = 1e-19
 Identities = 32/81 (39%), Positives = 46/81 (56%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
           V+  DGY ++  R KD+II GGENI   E+E  +  HP VLEA     PDE+ GE     
Sbjct: 410 VVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           + LK  A +  +++  +C+ K
Sbjct: 470 VVLKPGASVTEEELIEYCREK 490

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 81.5 bits (202), Expect = 1e-19
 Identities = 32/81 (39%), Positives = 46/81 (56%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
           V+ E+GY  VV R KDMI  GGEN+  +E+EE + THP V E    G+PD +  E V   
Sbjct: 404 VMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAV 463

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           +  K  A +  D++   C+ +
Sbjct: 464 VVPKAGATVTEDELIAHCRAR 484

Length = 523

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 79.5 bits (196), Expect = 5e-19
 Identities = 33/80 (41%), Positives = 50/80 (62%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L   G   + GRIK++I RGGE I P+ +E  + +HPNV+EA  +GVPD+  GE V   I
Sbjct: 418 LSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477

Query: 75  KLKENAKLNADDIRTFCKGK 94
             +E+A   A+++  FC+ +
Sbjct: 478 VPRESAPPTAEELVQFCRER 497

Length = 534

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 78.1 bits (193), Expect = 2e-18
 Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 2/80 (2%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L E+G+  V+ R  D+II GGENIYP EIEE + +HP V EA   GVPD++ G +V ++ 
Sbjct: 370 LDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWG-QVPVAF 428

Query: 75  KLKENAKLNADDIRTFCKGK 94
            + ++ ++  +++R FC+ K
Sbjct: 429 -VVKSGEVTEEELRHFCEEK 447

Length = 483

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L   G+  + GR  DM I GG N+YP+EIEE + THP V E    GVPD   G EVG+++
Sbjct: 404 LDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAV 462

Query: 75  -KLKENAKLNADDIRTFCKGK 94
              ++ A ++  ++  +  GK
Sbjct: 463 CVARDGAPVDEAELLAWLDGK 483

Length = 528

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
            DGY  +V R KDMII GG N+YP+ IE+ I  HP V E    G+PD+  GE     +KL
Sbjct: 433 TDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKL 492

Query: 77  KENAK-LNADDIRTFCKGK 94
           +  AK  + D++R F  GK
Sbjct: 493 RPGAKPFSLDELRAFLAGK 511

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 77.6 bits (192), Expect = 2e-18
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L EDGY  +  R  DMII GG NIYP+EIE  + THP V +   +GVPDE MGE V   +
Sbjct: 379 LDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVV 438

Query: 75  KLKENAKLN---ADDIRTFCKGK 94
           +  + A      A ++  + +G+
Sbjct: 439 QPADGADAGDALAAELIAWLRGR 461

Length = 502

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 77.3 bits (191), Expect = 3e-18
 Identities = 32/76 (42%), Positives = 40/76 (52%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
            DGY  + GR KD+IIRGG NI P  IEE +  HP V  A A G PD   GE     ++L
Sbjct: 457 ADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQL 516

Query: 77  KENAKLNADDIRTFCK 92
           K  A     ++  F +
Sbjct: 517 KPGASATEAELLAFAR 532

Length = 632

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 76.6 bits (189), Expect = 5e-18
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 5/92 (5%)

Query: 2   DGY-ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60
           DG+ A G   D  V+ E+G+ ++V R KDMI+  G N+YP EIE+ +  HP VLE  A G
Sbjct: 431 DGWLATG---DIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVG 487

Query: 61  VPDERMGEEVGISIKLKENAKLNADDIRTFCK 92
           VP E  GE V I + +K++  L  +++ T C+
Sbjct: 488 VPSEVSGEAVKIFV-VKKDPSLTEEELITHCR 518

Length = 560

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 30/77 (38%), Positives = 43/77 (55%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
           DG+  VV R KDM I GGEN+YP EIE  +  HP + E    G+ D + GE   ++I   
Sbjct: 374 DGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPA 433

Query: 78  ENAKLNADDIRTFCKGK 94
           + A L+ + IR+    +
Sbjct: 434 DGAPLDLERIRSHLSTR 450

Length = 488

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 29/82 (35%), Positives = 41/82 (50%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   + E+GY   VGR  DMI   G  + P EIEE I  HP V EA   GVPD  +G+ +
Sbjct: 237 DLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAI 296

Query: 71  GISIKLKENAKLNADDIRTFCK 92
              +   +   L+  ++   C+
Sbjct: 297 VAVVVSADGESLDEKELLKHCR 318

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 29/84 (34%), Positives = 45/84 (53%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D+ V   DG+ + V RIKD I R GENI   E+E+ + +HP V  A  + VP E   +EV
Sbjct: 406 DRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEV 465

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
             ++ L++   L    +   C+ +
Sbjct: 466 MAAVVLRDGTALEPVALVRHCEPR 489

Length = 542

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 74.9 bits (184), Expect = 3e-17
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V+  DG+ ++V R KD+II  G N+YP EIE+ +  HP V    A GVPDER GE V
Sbjct: 447 DIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAV 506

Query: 71  GISIKLKENAKLNADDIRTFCK 92
            + +  ++   L+ ++++ +CK
Sbjct: 507 KLFVVARD-PGLSVEELKAYCK 527

Length = 562

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.3 bits (183), Expect = 3e-17
 Identities = 33/76 (43%), Positives = 42/76 (55%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
            DGY  + GR KD+IIRGG NI P+ IEE +  HP V  A A G PD   GE     ++L
Sbjct: 246 ADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQL 305

Query: 77  KENAKLNADDIRTFCK 92
           K  A +   ++  F K
Sbjct: 306 KPGATVTEGELLAFVK 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 74.1 bits (182), Expect = 4e-17
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E G+  +V R KDMI+  G N+YP EIE+ I   P VLE  A GVPDE+ GE V + I +
Sbjct: 449 EQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-V 507

Query: 77  KENAKLNADDIRTFCK 92
           K++  L A+D++   +
Sbjct: 508 KKDPALTAEDVKAHAR 523

Length = 560

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 73.8 bits (182), Expect = 5e-17
 Identities = 34/78 (43%), Positives = 43/78 (55%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E GY  +VGR KD+II GG N+YPKE+E  I   P V+E+   GVP    GE V   +  
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448

Query: 77  KENAKLNADDIRTFCKGK 94
           K  A L+   I    KG+
Sbjct: 449 KPGAALDEAAILAALKGR 466

Length = 504

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 73.1 bits (180), Expect = 1e-16
 Identities = 31/79 (39%), Positives = 44/79 (55%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
           VL  DGY ++  R KD+II GGENI   E+E+ +  HP VL A     PD + GE     
Sbjct: 425 VLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAF 484

Query: 74  IKLKENAKLNADDIRTFCK 92
           ++LK+ A    ++I   C+
Sbjct: 485 VELKDGASATEEEIIAHCR 503

Length = 545

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 72.7 bits (178), Expect = 1e-16
 Identities = 31/84 (36%), Positives = 45/84 (53%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   L   G   +VGR  DMII GGEN+YP+ +E  +  HP V +    GVPDER G  +
Sbjct: 402 DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL 461

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              + L   + ++A  +R + K +
Sbjct: 462 AAFVVLHPGSGVDAAQLRDYLKDR 485

Length = 516

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 29/54 (53%), Positives = 36/54 (66%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  +  R   MII GG NIYP+E E  + THP V +A  +GVP+E +GEEV
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEV 447

Length = 511

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 71.9 bits (177), Expect = 2e-16
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 2   DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
           +G+ C    D   +  DGY  VVGR KD I RGGE I  +EIE  +  HP V+ A    +
Sbjct: 408 NGFYC--SGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSM 465

Query: 62  PDERMGE 68
            DE MGE
Sbjct: 466 EDELMGE 472

Length = 536

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 29/79 (36%), Positives = 48/79 (60%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           +  DG   ++GR    I  GGE ++P+E+EE ++ HP+V +A   GVPDER G+ V   +
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVV 315

Query: 75  KLKENAKLNADDIRTFCKG 93
           +L+  A L+  ++R  C+ 
Sbjct: 316 QLRAGAGLDLAELRDHCRQ 334

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 71.3 bits (175), Expect = 4e-16
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+G+  +VGR K+MI+ GG NI+P+EIE  +  HP V E    GVPD   GE+    IK 
Sbjct: 373 EEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG 432

Query: 77  KENAKLNADDIRTFCKGK 94
               +     +++FC  +
Sbjct: 433 SATKQ----QLKSFCLQR 446

Length = 487

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 70.6 bits (173), Expect = 7e-16
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 10/98 (10%)

Query: 2   DGYACGLKQD---QFV-------LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 51
           DGY  G  +D    F+       L E+G   VVGR  +MI+ GGEN+YP E+E+ + THP
Sbjct: 403 DGYTSGSTKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHP 462

Query: 52  NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT 89
           +V EA   GV DE+ G+ +   + LK  A    + ++ 
Sbjct: 463 DVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQ 500

Length = 537

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V   DGY ++  R KD+II GGENI   E+E  + THP VLEA     PDER GE  
Sbjct: 436 DLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESP 495

Query: 71  GISIKLKENAKLN-----ADDIRTFCKGK 94
              + LK     +     A+DI  FC+ +
Sbjct: 496 CAFVTLKPGVDKSDEAALAEDIMKFCRER 524

Length = 567

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 75
           E+GY  VV R KDMII GGENIY  E+E  + +HP+++E    G  DE+ GE  V ++  
Sbjct: 411 EEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Query: 76  LKENAKLNADDIRTFCKGK 94
             ++A L  +D+  F   +
Sbjct: 471 RNDDAALTLEDLAEFLTDR 489

Length = 542

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 58
           D     EDGY +++GR  D +   GE I P EIE  +  HP V EA  
Sbjct: 365 DLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L  +G+  V+GR  D+II GGENIYP+EIE  +  HP + EA     PD   G +V ++ 
Sbjct: 330 LDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWG-QVPVAY 388

Query: 75  KLKENAKLNADDIRTFCKGK 94
            +   + ++   +  +   K
Sbjct: 389 -IVSESDISQAKLIAYLTEK 407

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E GY ++ GR KD+I+RGGENI  +E+E+ +  HP + +A    +PDER+GE     + L
Sbjct: 422 EAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVL 481

Query: 77  KEN 79
           K  
Sbjct: 482 KAP 484

Length = 547

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 68.5 bits (168), Expect = 4e-15
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+GY   + R+K MI   G  ++P E+E  +  HP VLE    G PD R GE V   + L
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381

Query: 77  KENA--KLNADDIRTFCKG 93
           K +   K+  +DI  +C+ 
Sbjct: 382 KPDYRGKVTEEDIIEWCRE 400

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 68.3 bits (167), Expect = 4e-15
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 18  DGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 75
           D  G +  +GR  D I  GGEN+YP+E+E  +  HP V      GVPD R+ E V   ++
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVR 484

Query: 76  LKEN 79
           L++ 
Sbjct: 485 LRDG 488

Length = 563

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L  DGY  +  R +DM+I GG NIYP EIE  +   P V +   +G+PD   GE +   +
Sbjct: 389 LDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVV 448

Query: 75  KLKENAKLNADDIRTFCKG 93
           + +  A L+  DIR   K 
Sbjct: 449 EPQPGATLDEADIRAQLKA 467

Length = 509

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 68.0 bits (167), Expect = 5e-15
 Identities = 26/78 (33%), Positives = 40/78 (51%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDG   +V R K++I   G  + P E+E  +  HP V +A   G+PDE  GE     + L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443

Query: 77  KENAKLNADDIRTFCKGK 94
           K  +KL   +++ +   K
Sbjct: 444 KPGSKLTEQEVKDYVAKK 461

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 67.6 bits (166), Expect = 7e-15
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           +  DG   ++GR    I  GGE ++P+E+EE ++ HP+V +A   GVPDER G+EV   +
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477

Query: 75  KLKENAKLNADDIRTFC 91
           +L+E A+ +  ++R  C
Sbjct: 478 QLREGARPDLAELRAHC 494

Length = 533

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 67.2 bits (164), Expect = 1e-14
 Identities = 31/80 (38%), Positives = 42/80 (52%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L E+G+  +  R KDMII GGENI   E+E  I   P V EA   GV D+R GE +   +
Sbjct: 383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442

Query: 75  KLKENAKLNADDIRTFCKGK 94
            L   A L  + +   C+ +
Sbjct: 443 VLNPGATLTLEALDRHCRQR 462

Length = 497

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 65.7 bits (161), Expect = 4e-14
 Identities = 31/78 (39%), Positives = 41/78 (52%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY Q+  R KD+I  GGE I   E+E  +  HP V EA   GVP E+ GE     + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468

Query: 77  KENAKLNADDIRTFCKGK 94
           K  AK+  +++      K
Sbjct: 469 KPGAKVTEEELLEHLAKK 486

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
           DGY ++ GR KD+IIRGGENI   EIE  +  HP + +      PDER+GE     +  +
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491

Query: 78  ENAKLNADDIRTFCKGK 94
               L+ +++  F K +
Sbjct: 492 PGQSLDFEEMVEFLKAQ 508

Length = 547

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 65.1 bits (159), Expect = 6e-14
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D      DGY  V GR+KD I RGGE I  +E+E  +  HP V +A    +PDE +GE+ 
Sbjct: 420 DLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKS 479

Query: 71  GISIKLKENAKLNADDIRTF 90
              I +KE   L A  +R F
Sbjct: 480 CAFIVVKE-PPLRAAQLRRF 498

Length = 542

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 64.9 bits (158), Expect = 7e-14
 Identities = 30/77 (38%), Positives = 41/77 (53%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
           +GY ++ GR KD+IIRGGENI   EIE  +  HP V +      PDER+GE     +  K
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489

Query: 78  ENAKLNADDIRTFCKGK 94
               L+   +  F K +
Sbjct: 490 PGCTLDFAAMVAFLKAQ 506

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 63.6 bits (154), Expect = 2e-13
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 10  QDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 69
            D  V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E 
Sbjct: 394 GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER 453

Query: 70  VGISIKLKENAKLNADDIRTFCKGK 94
               +  +   K   +++       
Sbjct: 454 PLAVVVPRG-EKPTPEELNEHLLKA 477

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+GY  +  R+K MI   G  ++P E+E  +  HP + EA     PD R GE V   + L
Sbjct: 428 EEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVL 487

Query: 77  KENA--KLNADDIRTFCKG 93
           +  A  K   ++I  + + 
Sbjct: 488 RPEARGKTTEEEIIAWARE 506

Length = 546

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.0 bits (150), Expect = 8e-13
 Identities = 30/78 (38%), Positives = 44/78 (56%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           + EDG+  V  R KDMI+  G N+YP+E+EE +  H  V E    GVPD   GE V   +
Sbjct: 441 MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV 500

Query: 75  KLKENAKLNADDIRTFCK 92
            LKE  + + +++  F +
Sbjct: 501 VLKEGTECSEEELNQFAR 518

Length = 563

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   L  +GY  VVGR KD I RGGE I  +EIE  +  HP V +A    +PDE +GE+ 
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKS 472

Query: 71  GISIKLKENAKLNADDIRTFCKG 93
              I +++ A L A  +R F + 
Sbjct: 473 CAFIVVRDPA-LKAAQLRRFLRE 494

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 29/62 (46%), Positives = 32/62 (51%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
            DGY    GR  D+I   G  I P EIEE +  HP VLEA   GVPD   GE V   + L
Sbjct: 328 ADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVL 387

Query: 77  KE 78
            E
Sbjct: 388 AE 389

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 60.6 bits (147), Expect = 2e-12
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D F   EDGY   V R  DMI+  G NI   E+E+ + THP+V E    GVPDE  G+ V
Sbjct: 371 DIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIV 430

Query: 71  GISIKLKENAK---LNADDIRTFCK 92
              I L++  K   L A+ ++ F K
Sbjct: 431 CAHIVLRDGTKATELLAERLQDFVK 455

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 59.6 bits (144), Expect = 5e-12
 Identities = 30/62 (48%), Positives = 36/62 (58%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY  +  R   MII GG NIYP+E E  +  HP V +    GVPD  MGE+V   I+L
Sbjct: 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQL 450

Query: 77  KE 78
            E
Sbjct: 451 VE 452

Length = 501

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 58.9 bits (143), Expect = 9e-12
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           L   GY  ++GR    II GGEN+YP E+E  I     V +    G+PD   GE V
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV 389

Length = 452

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 4   YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 63
           Y  G   D     EDGY  + GR  D+I   G+ I P EIE  +  HP V EA   GVPD
Sbjct: 398 YRTG---DWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPD 454

Query: 64  ERMGEEVGISIKLKENAKLN--ADDIRTFCK 92
              G+ V   + L    + N  A++IR    
Sbjct: 455 PGKGQIVLAFVVLAAGVEPNELAEEIRRHVA 485

Length = 528

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 25/75 (33%), Positives = 38/75 (50%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+G+   V R  +MI RGGEN+   E+E  I THP + +    G+ D    E +   + L
Sbjct: 410 EEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469

Query: 77  KENAKLNADDIRTFC 91
            E   L+ ++   FC
Sbjct: 470 NEGETLSEEEFFAFC 484

Length = 517

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E G+   +GR K+M+   G +++P E+E  +  HP VL +   G PD   G+     ++L
Sbjct: 454 EQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL 513

Query: 77  KENAKLNADDIRTFCK 92
           K  A L A  ++ +C+
Sbjct: 514 KPGADLTAAALQAWCR 529

Length = 567

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 55.8 bits (134), Expect = 1e-10
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 16  REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           REDG+  + GR  +MII GG NI P E++   +    V EA  Y +PDE  G  VG+++
Sbjct: 413 REDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAV 471

Length = 540

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D++   EDGY    GR  DM+   G  + P E+E+ +  HP VLEA   G  DE    + 
Sbjct: 390 DKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKP 449

Query: 71  GISIKLKENAKLN---ADDIRTFCKGK 94
              + LK+  + +     +++ F K K
Sbjct: 450 KAFVVLKDGYQPSPELETELKDFVKDK 476

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 54.4 bits (131), Expect = 3e-10
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY   +GR  D+II  G  I P ++E  +  HP V EA   GVPD   GE V   + L
Sbjct: 329 EDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVL 388

Query: 77  KENAKLN---ADDIRTFCKGK 94
           KE    +   A++++ F K +
Sbjct: 389 KEGYAGSDELAEELQLFVKKR 409

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 25/54 (46%), Positives = 28/54 (51%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY   VGR  D+I   G  I P E+E  +  HP V EA   G PD   GE V
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVV 372

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 24/74 (32%), Positives = 36/74 (48%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
            DGY    GR+ D +   GEN+    IE  +  +P+  E   Y VPD  +G++V  ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452

Query: 77  KENAKLNADDIRTF 90
              AK + D    F
Sbjct: 453 APGAKFDPDAFAEF 466

Length = 529

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 65
           D+F    DG+ +  GR  DMI   G+ + P E+E  +  HP V EA    VPDE 
Sbjct: 320 DRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDED 374

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 23  VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE---AYAYGVPDERMGEEVGI 72
           V GR+KD+II  G N YP++IE  ++     L    A A+ V  +   E + +
Sbjct: 434 VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG-EERLVV 485

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 38/80 (47%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V+  DG+ ++  R KD+II GGENI   E+E  +  +P VLE     +P    GE  
Sbjct: 426 DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETP 485

Query: 71  GISIKLKENAKLNADDIRTF 90
              + L++      D +   
Sbjct: 486 CAFVVLEKGETTKEDRVDKL 505

Length = 579

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 27/63 (42%), Positives = 33/63 (52%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY   VGR  D+I   G  I P E+E  +  HP VLE    GVPD   G+ V  +I L
Sbjct: 424 EDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVL 483

Query: 77  KEN 79
            + 
Sbjct: 484 TKG 486

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 23  VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE-VGISIKLKENAK 81
           ++GR+ ++   GGE I P+EIE  I  HP V + +   V D   G+  V +   ++ +++
Sbjct: 349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAV---VESDSE 405

Query: 82  LNADDIRTFCKGK 94
               ++  + + K
Sbjct: 406 AAVVNLAEWLQDK 418

Length = 458

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 24/78 (30%), Positives = 36/78 (46%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
             GY ++  R KD+I  GGE I   ++E     HP V EA   GV   +  E   + ++L
Sbjct: 422 AYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQL 481

Query: 77  KENAKLNADDIRTFCKGK 94
           K       ++I  +  GK
Sbjct: 482 KPGETATREEILKYMDGK 499

Length = 542

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEV 70
           DGY  + GR KD+II  G NI+P++IE   +  P +   +A A+ +  E  GE++
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504

Length = 579

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E G    +GR+ D+I   G N+YP E+E+ +   P V EA  Y   D   GE V    K 
Sbjct: 303 ERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERV----KA 358

Query: 77  KENAKLNAD--DIRTFC 91
           K  +    D   +R +C
Sbjct: 359 KVISHEEIDPVQLREWC 375

Length = 414

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY  V+GR  D+I   G  +   E+EE +  HP+V E    GV DE  G+     + L
Sbjct: 473 EDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVL 532

Query: 77  KENAKLNADDIRT 89
           K++ K++AD +  
Sbjct: 533 KDDCKIDADQLEN 545

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY   VGR  D+I   G  + P E+E  +  HP V EA   G PD   GE V   + L
Sbjct: 332 EDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSL 391

Query: 77  KENAKLNAD---DIRTFCKGK 94
           +   + + +   ++ TF + +
Sbjct: 392 RPGFEPSEELRRELLTFARQR 412

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DG   V+GR  D I  GG  + P+ +E  + THP V +   +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298

Length = 358

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 50.6 bits (122), Expect = 6e-09
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 17  EDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 65
           EDG+  +  R KD+I+  GG+NI P+ IE  ++  P + +A   G  D+R
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG--DDR 370

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
            DG+    GR  D +   GEN+    IE  +  HP +     Y VPDER+G++V  ++ L
Sbjct: 392 ADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVL 451

Query: 77  KENAKLNADDIRTF 90
           ++ A  + D    F
Sbjct: 452 RDGATFDPDAFAAF 465

Length = 540

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY  +V R+K++I   G  + P E+E  + +HP + +A     PDE  GE     +  
Sbjct: 398 EDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVR 457

Query: 77  KENAKLNADDIRTF 90
           +  ++L+ D++  F
Sbjct: 458 QPGSELSEDEVMQF 471

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 50.3 bits (121), Expect = 8e-09
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM-GEE 69
           D       GY   V R+ D     GEN+   E+EE +  HP V EA  YGV      G  
Sbjct: 324 DLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRA 383

Query: 70  VGISIKLKENAKLNAD 85
              ++ L   A  +  
Sbjct: 384 GMAALTLAPGAAFDPQ 399

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 11  DQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG--------- 60
           D   L EDGY  + GR K++I    G+NI P+ IE  +   P + +    G         
Sbjct: 455 DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVAL 514

Query: 61  -VPDERMGEEVGISIKLKENA 80
            VPD    E+   S+    +A
Sbjct: 515 IVPDFDALEKWAESLNKVISA 535

Length = 613

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+G+   VGR  +MI   G  + P E+EE       V EA A+GVPD  +G+ + + +  
Sbjct: 408 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

Query: 77  KENAKLNADDIRTFCK 92
               +L+   +   C+
Sbjct: 468 PGGEELDRAALLAECR 483

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D+ ++ EDGY   VGR  D+I   G  I P E+E  +  HP V+E+     PD   GE V
Sbjct: 408 DRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVV 467

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 28/73 (38%), Positives = 37/73 (50%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY  ++GR  D I   G+ + P EIE  + +HP V EA A GVPD   GE +   + L
Sbjct: 347 EDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVL 406

Query: 77  KENAKLNADDIRT 89
           K     +A     
Sbjct: 407 KPGVTPSAALEAE 419

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
            DG+  +  R +D+I  GGE IY  ++E +I   P V+E    G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493

Length = 576

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY  ++GR  D+I   G  +  +EIEE + +HP+V E    GV DE  G+   +   L
Sbjct: 484 EDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL 543

Query: 77  KENAKLNADDIR 88
           KE+         
Sbjct: 544 KESDSAGDAHDP 555

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 11  DQFVLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 69
           D  V+  DG  ++VGR   D+I  GG  I   EIE  +  HP V EA   GVPD+ +G+ 
Sbjct: 356 DVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR 415

Query: 70  V 70
           +
Sbjct: 416 I 416

Length = 471

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 48.3 bits (115), Expect = 5e-08
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
           EDGY  +V R+K++I   G  I P ++E  + +HP +++A    VPD+  GE
Sbjct: 442 EDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGE 493

Length = 560

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 24/62 (38%), Positives = 32/62 (51%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY    GR+ D+I   GE + P E+E  +  HP V EA   G PD   GE +   + L
Sbjct: 444 EDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL 503

Query: 77  KE 78
           + 
Sbjct: 504 RP 505

Length = 570

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           +DGY  + GR+ D+I   G  +   EIE  + +HP V EA   G+PD+  G+ +   + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546

Query: 77  KENAKLNAD 85
           K+  + + +
Sbjct: 547 KDGYEPDDE 555

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMG-EEVGIS 73
            +G   + GR KD+II  G+N YP +IE   +    +      A GV DE+   EEV I 
Sbjct: 380 RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439

Query: 74  IKLKENAK 81
           ++ +++  
Sbjct: 440 VEYRQSLD 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
            DGY  ++GR  D+I   G  +  +EIEE I +HP V E    GV D   G+
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536

Length = 629

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
           DG+ Q+  R KD+I  GGE I   +IE     HP V EA        +  E   + +  +
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481

Query: 78  ENAKLNADDIRTFCKGK 94
             A++  +++  F +GK
Sbjct: 482 PGAEVTREELLAFYEGK 498

Length = 539

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 6/33 (18%)

Query: 19  GY----GQVV--GRIKDMIIRGGENIYPKEIEE 45
           GY    G+VV  GR+KD+II  G NIYP +IE 
Sbjct: 422 GYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454

Length = 545

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           +DG   +V RIK++I   G  + P E+E  + THP+V +A    +PDE  GE     + +
Sbjct: 429 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI 488

Query: 77  KENAKLNADDIRTF 90
              AK + +DI  F
Sbjct: 489 NPKAKESEEDILNF 502

Length = 546

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY  ++GR+ D+I   G  +   E+E  + +HP V EA   G PDE  GE +   + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534

Query: 77  KENAK 81
           K+  +
Sbjct: 535 KDGVE 539

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 23  VVGRIKDMIIRGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 80
           +VGRIKD++I  G N YP +IE  IQ  T   V    A  VPD+   + V I I+LK+  
Sbjct: 454 IVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509

Query: 81  KLNADDIRTFC 91
             + + +    
Sbjct: 510 DSDEEAMDRLR 520

Length = 578

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 23/54 (42%), Positives = 29/54 (53%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 64
           D++V  +DG     GR  DM+   G  + P EIE  +  HP VLEA   GV DE
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDE 443

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 15/71 (21%)

Query: 14  VLREDGY-----------GQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--A 58
              EDG+           G++   GR KDMII  G N Y  EIE  ++  P V  ++  A
Sbjct: 424 AFTEDGWFRTGDLGFLHDGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAA 483

Query: 59  YGVPDERMGEE 69
             V D   G +
Sbjct: 484 CAVRDAGSGTD 494

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 16  REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL---EAYAYGVPDERMGEEVGI 72
             DG   V GR+KDM+I  G N+YP++IE+ ++    V+      A+ V  +  GEE GI
Sbjct: 439 LRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQ--GEE-GI 495

Query: 73  SI 74
            I
Sbjct: 496 GI 497

Length = 4334

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
             EDGY   VGR  D+       I P E+E  +  HP V EA     PD          I
Sbjct: 318 RDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYI 377

Query: 75  KLKENAKLNAD---DIRTFCKGK 94
            LK   + + +   ++    + +
Sbjct: 378 VLKPGYEPSRELALELFAHVRER 400

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 70
           DG   + GRI D+I+  G N YP++IE  + +  P V   Y  A+ VP E     V
Sbjct: 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543

Length = 612

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 15  LREDGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
           LR+D  G+   + R+ D      EN+   E+ + +   P+V EA  YGV
Sbjct: 346 LRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGV 394

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 15  LREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQT 49
           L +DG+  + GRIK++II  GGEN+ P  IEE ++ 
Sbjct: 429 LDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKK 464

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP V EA   G PD+  G+ +
Sbjct: 495 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI 548

Length = 637

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           +DGY  + GR+ D+I   G  I   E+E  + +HP   EA   G+  E  G+ +   + L
Sbjct: 525 KDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTL 584

Query: 77  KENAKLNAD 85
            E    + +
Sbjct: 585 VEGVPYSEE 593

Length = 666

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAY--AYGVPDERMGEEV 70
           DG   + GR+KD++I  G N YP+++E   Q     +   Y  A+ VP  ++ + V
Sbjct: 476 DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVV 531

Length = 631

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 23/47 (48%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD 63
           E+GY  +V R  D I   G  +    IE  I  HP VLE  + G+ D
Sbjct: 504 ENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYD 550

Length = 647

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 14  VLREDGYG--QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 62
           ++R+DG+G  Q V R+ D     GEN+   E+E  +   P V EA  YGV 
Sbjct: 446 LMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVE 496

Length = 600

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 1   MDGY---ACGLKQDQFVLREDGY----GQVV-GRIKDMIIRGGENIYPKEIE 44
           M GY   A     D F   + GY    G VV GR K++I   G NI+P EIE
Sbjct: 383 MSGYLGQAPIDPDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIE 434

Length = 525

>gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 22  QVVGRIKDMIIRGGENIYPKEIEEFI 47
           ++ GR  DM+I  G N++P ++EE I
Sbjct: 312 RITGRSDDMLIIRGVNVFPTQLEEVI 337

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions [Energy metabolism, Other]. Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG1176|consensus	537		99.97
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.94
PLN03051	499	acyl-activating enzyme; Provisional	99.93
KOG1177|consensus	596		99.93
PRK07529	632	AMP-binding domain protein; Validated	99.93
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.93
PLN02654	666	acetate-CoA ligase	99.92
PRK07868	994	acyl-CoA synthetase; Validated	99.92
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.92
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.92
KOG1175|consensus	626		99.92
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.92
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.91
PRK00174	637	acetyl-CoA synthetase; Provisional	99.91
PRK07788	549	acyl-CoA synthetase; Validated	99.91
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.91
PLN02574	560	4-coumarate--CoA ligase-like	99.91
PLN02860	563	o-succinylbenzoate-CoA ligase	99.91
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.91
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.91
PRK07867	529	acyl-CoA synthetase; Validated	99.9
PRK09274	552	peptide synthase; Provisional	99.9
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.9
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.9
PRK09188	365	serine/threonine protein kinase; Provisional	99.9
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.9
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.9
PLN03052	728	acetate--CoA ligase; Provisional	99.9
PRK13382	537	acyl-CoA synthetase; Provisional	99.9
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.9
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.9
PRK09088	488	acyl-CoA synthetase; Validated	99.89
PLN03102	579	acyl-activating enzyme; Provisional	99.89
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.89
PRK13388	540	acyl-CoA synthetase; Provisional	99.89
PLN02246	537	4-coumarate--CoA ligase	99.89
PLN02736	651	long-chain acyl-CoA synthetase	99.89
PRK06060	705	acyl-CoA synthetase; Validated	99.89
PRK06839	496	acyl-CoA synthetase; Validated	99.89
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.89
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.89
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.89
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.89
PRK05852	534	acyl-CoA synthetase; Validated	99.89
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.89
PLN02330	546	4-coumarate--CoA ligase-like 1	99.88
PRK08308	414	acyl-CoA synthetase; Validated	99.88
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.88
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.88
PRK06164	540	acyl-CoA synthetase; Validated	99.88
PRK12583	558	acyl-CoA synthetase; Provisional	99.88
PRK13383	516	acyl-CoA synthetase; Provisional	99.88
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.88
PRK06145	497	acyl-CoA synthetase; Validated	99.88
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.88
PRK04319	570	acetyl-CoA synthetase; Provisional	99.88
PRK06178	567	acyl-CoA synthetase; Validated	99.88
PRK07798	533	acyl-CoA synthetase; Validated	99.88
PRK08162	545	acyl-CoA synthetase; Validated	99.88
PRK07470	528	acyl-CoA synthetase; Validated	99.87
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.87
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.87
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.87
PRK13390	501	acyl-CoA synthetase; Provisional	99.87
PLN02614	666	long-chain acyl-CoA synthetase	99.87
PRK07514	504	malonyl-CoA synthase; Validated	99.87
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.87
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.87
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.87
PRK07787	471	acyl-CoA synthetase; Validated	99.87
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.87
PRK07638	487	acyl-CoA synthetase; Validated	99.87
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.87
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.87
PRK08315	559	AMP-binding domain protein; Validated	99.87
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.87
PTZ00342	746	acyl-CoA synthetase; Provisional	99.87
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.87
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.86
PRK08316	523	acyl-CoA synthetase; Validated	99.86
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.86
PRK06188	524	acyl-CoA synthetase; Validated	99.86
PRK05857	540	acyl-CoA synthetase; Validated	99.86
PRK09192	579	acyl-CoA synthetase; Validated	99.85
PLN02479	567	acetate-CoA ligase	99.85
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.85
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.85
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.85
PRK12316	5163	peptide synthase; Provisional	99.85
PRK13391	511	acyl-CoA synthetase; Provisional	99.85
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.85
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.85
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.85
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.84
PRK12316	5163	peptide synthase; Provisional	99.84
PRK12467	3956	peptide synthase; Provisional	99.84
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.84
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.84
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.84
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.84
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.84
PTZ00216	700	acyl-CoA synthetase; Provisional	99.83
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.83
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.82
PRK05850	578	acyl-CoA synthetase; Validated	99.82
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.81
PRK12467	3956	peptide synthase; Provisional	99.81
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.81
PRK05691	4334	peptide synthase; Validated	99.81
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.81
PRK05691	4334	peptide synthase; Validated	99.8
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.79
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.79
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.77
PRK12582	624	acyl-CoA synthetase; Provisional	99.74
KOG1256|consensus	691		99.71
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.69
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.66
KOG1179|consensus	649		99.62
KOG1180|consensus	678		99.57
KOG1178|consensus	1032		99.4
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.15
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.15
PTZ00297	1452	pantothenate kinase; Provisional	99.06
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.05
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.96
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	98.91
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.31
KOG3628|consensus	1363		98.09
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	97.67
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.54
PLN02249	597	indole-3-acetic acid-amido synthetase	96.81
PLN02620	612	indole-3-acetic acid-amido synthetase	94.58
PLN02247	606	indole-3-acetic acid-amido synthetase	93.38
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	87.57
PF09580	177	Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ	84.58

>KOG1176|consensus

Probab=99.97  E-value=1.3e-31  Score=185.96  Aligned_cols=94  Identities=39%  Similarity=0.560  Sum_probs=90.6

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |+++|||+|||+|++|+||+|+|++|.+|+||.+|++|+|.|||++|.+||.|.||+|++.+++..|+.++|+|+.+++.
T Consensus       404 ~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~  483 (537)
T KOG1176|consen  404 FDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS  483 (537)
T ss_pred             cccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhcC
Q psy5015          81 KLNADDIRTFCKGK   94 (94)
Q Consensus        81 ~~~~~~l~~~l~~~   94 (94)
                      ..++++|.++|+++
T Consensus       484 ~lte~di~~~v~k~  497 (537)
T KOG1176|consen  484 TLTEKDIIEYVRKK  497 (537)
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999875

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=5.5e-26  Score=158.12  Aligned_cols=91  Identities=47%  Similarity=0.710  Sum_probs=85.4

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC--C
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN--A   80 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~   80 (94)
                      ++|||+|||+|++|++|+++|.||.+|+|+++|++|+|.|||.++.+||.|.+++|++++++..|+.++++++++++  .
T Consensus       399 ~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~  478 (534)
T COG0318         399 EDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDA  478 (534)
T ss_pred             cCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCC
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999876  3


Q ss_pred             CCCHHHHHHHHhc
Q psy5015          81 KLNADDIRTFCKG   93 (94)
Q Consensus        81 ~~~~~~l~~~l~~   93 (94)
                      ..+.++|.++|++
T Consensus       479 ~~~~~~i~~~~~~  491 (534)
T COG0318         479 ELTAEELRAFLRK  491 (534)
T ss_pred             CCCHHHHHHHHHh
Confidence            4588999999875

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.93  E-value=1.1e-25  Score=155.04  Aligned_cols=90  Identities=22%  Similarity=0.213  Sum_probs=79.6

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCeeeEEEEEeeCCCCC-ceEEEEE---EEcC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMG-EEVGISI---KLKE   78 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~   78 (94)
                      .+||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+ ||.|.+|+|++++++..+ +.++++|   ++++
T Consensus       356 ~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~  435 (499)
T PLN03051        356 MPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKK  435 (499)
T ss_pred             cceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecc
Confidence            3589999999999999999999999999999999999999999996 999999999999998888 6788888   7776


Q ss_pred             CC-CCCHHHHHHHHhc
Q psy5015          79 NA-KLNADDIRTFCKG   93 (94)
Q Consensus        79 ~~-~~~~~~l~~~l~~   93 (94)
                      +. ..+.++|+++|++
T Consensus       436 ~~~~~~~~~l~~~~~~  451 (499)
T PLN03051        436 GFDQARPEALQKKFQE  451 (499)
T ss_pred             cccccchHHHHHHHHH
Confidence            54 4667788877753

>KOG1177|consensus

Probab=99.93  E-value=4.1e-25  Score=150.02  Aligned_cols=93  Identities=48%  Similarity=0.798  Sum_probs=87.7

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.+.||+|||++.++++|.++++||.+|||+.+|++|||.|||+.|.+||.|.++.|+++++...|+.++|+|.++++..
T Consensus       458 ~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e  537 (596)
T KOG1177|consen  458 GNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAE  537 (596)
T ss_pred             ccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999988755


Q ss_pred             --CCHHHHHHHHhcC
Q psy5015          82 --LNADDIRTFCKGK   94 (94)
Q Consensus        82 --~~~~~l~~~l~~~   94 (94)
                        .+.++|+.+|+.+
T Consensus       538 ~~~t~E~lKa~Ck~k  552 (596)
T KOG1177|consen  538 GKTTAETLKAMCKGK  552 (596)
T ss_pred             ccccHHHHHHHHhcc
Confidence              5889999999864

>PRK07529 AMP-binding domain protein; Validated

Probab=99.93  E-value=8.5e-25  Score=154.40  Aligned_cols=92  Identities=36%  Similarity=0.462  Sum_probs=86.5

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      ++|||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.+||.|.+|+|++.+++..++.++++|++.++...
T Consensus       443 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~  522 (632)
T PRK07529        443 EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASA  522 (632)
T ss_pred             CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999998889999999999988778


Q ss_pred             CHHHHHHHHhcC
Q psy5015          83 NADDIRTFCKGK   94 (94)
Q Consensus        83 ~~~~l~~~l~~~   94 (94)
                      +.++|+++|+++
T Consensus       523 ~~~~l~~~~~~~  534 (632)
T PRK07529        523 TEAELLAFARDH  534 (632)
T ss_pred             CHHHHHHHHHHh
Confidence            888999988753

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.93  E-value=3.2e-25  Score=153.81  Aligned_cols=84  Identities=33%  Similarity=0.366  Sum_probs=78.4

Q ss_pred             eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHH
Q psy5015           6 CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD   85 (94)
Q Consensus         6 ~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~   85 (94)
                      ||.|||.+++|+||+++|+||.||+||+.|+||.|.|||++|.+||.|.||+|++.+++..|+.+.+||+++++...+  
T Consensus       397 ~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~--  474 (528)
T COG0365         397 WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN--  474 (528)
T ss_pred             eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987555  


Q ss_pred             HHHHHH
Q psy5015          86 DIRTFC   91 (94)
Q Consensus        86 ~l~~~l   91 (94)
                      +|++.+
T Consensus       475 ~L~~ei  480 (528)
T COG0365         475 ELAEEI  480 (528)
T ss_pred             HHHHHH
Confidence            554444

>PLN02654 acetate-CoA ligase

Probab=99.92  E-value=1.5e-24  Score=154.11  Aligned_cols=90  Identities=23%  Similarity=0.328  Sum_probs=81.6

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||++++|+||+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..++.++++|+++++...+
T Consensus       512 ~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~  591 (666)
T PLN02654        512 AGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYS  591 (666)
T ss_pred             CCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999998899999999998876554


Q ss_pred             H---HHHHHHHhc
Q psy5015          84 A---DDIRTFCKG   93 (94)
Q Consensus        84 ~---~~l~~~l~~   93 (94)
                      .   ++|+++|++
T Consensus       592 ~~l~~~l~~~~~~  604 (666)
T PLN02654        592 EELRKSLILTVRN  604 (666)
T ss_pred             HHHHHHHHHHHHH
Confidence            3   356666654

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.92  E-value=1.8e-24  Score=159.05  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=83.2

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      ++|||+|||+|++|+||+|+|+||.||+||++|.+|+|.|||++|.+||.|.+|+|++.+++. ++.++++|+++++...
T Consensus       834 ~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~  912 (994)
T PRK07868        834 ADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAI  912 (994)
T ss_pred             CCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcC
Confidence            579999999999999999999999999999999999999999999999999999999998865 5788999999887778


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++|+++|++
T Consensus       913 ~~~~L~~~l~~  923 (994)
T PRK07868        913 TAADLTEALAS  923 (994)
T ss_pred             CHHHHHHHHHh
Confidence            88999999863

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.92  E-value=2.2e-24  Score=152.87  Aligned_cols=90  Identities=20%  Similarity=0.187  Sum_probs=82.4

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+|++++||+++|.||.||+||++|+||+|.|||++|.+||.|.+++|++++++..++.++++|+++++...+
T Consensus       498 ~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~  577 (652)
T TIGR01217       498 PGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLD  577 (652)
T ss_pred             CCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999998899999999998876555


Q ss_pred             H---HHHHHHHhc
Q psy5015          84 A---DDIRTFCKG   93 (94)
Q Consensus        84 ~---~~l~~~l~~   93 (94)
                      .   ++|+++|++
T Consensus       578 ~~~~~~l~~~~~~  590 (652)
T TIGR01217       578 DALLDRIKRTIRA  590 (652)
T ss_pred             HHHHHHHHHHHHh
Confidence            4   477777764

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.92  E-value=3.4e-24  Score=146.63  Aligned_cols=90  Identities=30%  Similarity=0.436  Sum_probs=82.8

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .+|||+|||++++++||+++|.||.||+||++|++|+|.+||++|.+||.|.+|+|++.+++..++.+++++++.++ ..
T Consensus       322 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~  400 (452)
T PRK07445        322 SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SI  400 (452)
T ss_pred             CCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CC
Confidence            46899999999999999999999999999999999999999999999999999999999998888999999988765 45


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++++++|++
T Consensus       401 ~~~~l~~~~~~  411 (452)
T PRK07445        401 SLEELKTAIKD  411 (452)
T ss_pred             CHHHHHHHHHH
Confidence            67888888875

>KOG1175|consensus

Probab=99.92  E-value=1.3e-24  Score=152.20  Aligned_cols=88  Identities=30%  Similarity=0.344  Sum_probs=81.3

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      .|+|+|||.+++|++|++++.||.||+||++|+|+++.|||+++.+||.|.|++|++.+++..|+.+.+||+++++ ..+
T Consensus       474 pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g-~~~  552 (626)
T KOG1175|consen  474 PGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG-SHD  552 (626)
T ss_pred             CceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC-CCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999998 455


Q ss_pred             HHHHHHHHh
Q psy5015          84 ADDIRTFCK   92 (94)
Q Consensus        84 ~~~l~~~l~   92 (94)
                      .++|.+.|+
T Consensus       553 ~~~L~kel~  561 (626)
T KOG1175|consen  553 PEQLTKELV  561 (626)
T ss_pred             hHHHHHHHH
Confidence            555555554

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.92  E-value=5.2e-24  Score=150.91  Aligned_cols=75  Identities=28%  Similarity=0.240  Sum_probs=72.5

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE   78 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   78 (94)
                      +|||+|||+|+++++|+++|+||.||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++|++++
T Consensus       491 ~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~  565 (647)
T PTZ00237        491 PGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQ  565 (647)
T ss_pred             CCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEecc
Confidence            689999999999999999999999999999999999999999999999999999999999988999999999874

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.91  E-value=3.9e-24  Score=150.86  Aligned_cols=91  Identities=29%  Similarity=0.325  Sum_probs=81.0

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++...
T Consensus       470 ~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~  549 (628)
T TIGR02316       470 KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSA  549 (628)
T ss_pred             CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCccc
Confidence            36799999999999999999999999999999999999999999999999999999999999889999999998765432


Q ss_pred             --------CHHHHHHHHhc
Q psy5015          83 --------NADDIRTFCKG   93 (94)
Q Consensus        83 --------~~~~l~~~l~~   93 (94)
                              ..++|+++|++
T Consensus       550 ~~~~~~~~~~~~i~~~~~~  568 (628)
T TIGR02316       550 GDAHDPHAVETGMMDCVVR  568 (628)
T ss_pred             ccccchHHHHHHHHHHHHH
Confidence                    23567777764

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.91  E-value=8.6e-24  Score=149.13  Aligned_cols=91  Identities=26%  Similarity=0.388  Sum_probs=82.7

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .+|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|++.++...
T Consensus       481 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~  560 (637)
T PRK00174        481 FKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEP  560 (637)
T ss_pred             CCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCC
Confidence            36899999999999999999999999999999999999999999999999999999999998889999999999876554


Q ss_pred             C---HHHHHHHHhc
Q psy5015          83 N---ADDIRTFCKG   93 (94)
Q Consensus        83 ~---~~~l~~~l~~   93 (94)
                      +   .++|+++|++
T Consensus       561 ~~~~~~~l~~~l~~  574 (637)
T PRK00174        561 SDELRKELRNWVRK  574 (637)
T ss_pred             CHHHHHHHHHHHHh
Confidence            4   4678887765

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.91  E-value=6.4e-24  Score=147.35  Aligned_cols=91  Identities=34%  Similarity=0.545  Sum_probs=85.5

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.++|.|.+++|++.+++..++.++++|+++++...+
T Consensus       426 ~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~  505 (549)
T PRK07788        426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALD  505 (549)
T ss_pred             CCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999988899999999998877788


Q ss_pred             HHHHHHHHhcC
Q psy5015          84 ADDIRTFCKGK   94 (94)
Q Consensus        84 ~~~l~~~l~~~   94 (94)
                      .++|+++|+++
T Consensus       506 ~~~l~~~~~~~  516 (549)
T PRK07788        506 EDAIKDYVRDN  516 (549)
T ss_pred             HHHHHHHHHHh
Confidence            88999998763

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.91  E-value=1e-23  Score=148.45  Aligned_cols=90  Identities=27%  Similarity=0.420  Sum_probs=82.3

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++|+++++...+
T Consensus       474 ~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~  553 (625)
T TIGR02188       474 PGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPD  553 (625)
T ss_pred             CCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999998899999999998876544


Q ss_pred             H---HHHHHHHhc
Q psy5015          84 A---DDIRTFCKG   93 (94)
Q Consensus        84 ~---~~l~~~l~~   93 (94)
                      .   ++|+++|++
T Consensus       554 ~~~~~~l~~~~~~  566 (625)
T TIGR02188       554 DELRKELRKHVRK  566 (625)
T ss_pred             HHHHHHHHHHHHh
Confidence            3   577777764

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.91  E-value=6.4e-24  Score=147.91  Aligned_cols=92  Identities=25%  Similarity=0.401  Sum_probs=85.2

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.+|||+|||+|+++++|++++.||.+|+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++|+.+++..
T Consensus       427 ~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  506 (560)
T PLN02574        427 DKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGST  506 (560)
T ss_pred             cCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCC
Confidence            45799999999999999999999999999999999999999999999999999999999998888888999999887767


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++|.+++++
T Consensus       507 ~~~~~l~~~~~~  518 (560)
T PLN02574        507 LSQEAVINYVAK  518 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            778889988875

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.91  E-value=9.8e-24  Score=147.07  Aligned_cols=92  Identities=30%  Similarity=0.523  Sum_probs=82.9

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC-
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-   80 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-   80 (94)
                      +.+|||+|||+|+++++|+++|.||.+|+||++|++|+|.+||+++.+||.|.+++|++.++...++.++++|+++++. 
T Consensus       411 ~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~  490 (563)
T PLN02860        411 SNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWI  490 (563)
T ss_pred             cCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccc
Confidence            3579999999999999999999999999999999999999999999999999999999999988889999999987652 


Q ss_pred             -------------CCCHHHHHHHHhc
Q psy5015          81 -------------KLNADDIRTFCKG   93 (94)
Q Consensus        81 -------------~~~~~~l~~~l~~   93 (94)
                                   ..+.++|++++++
T Consensus       491 ~~~~~~~~~~~~~~~~~~~l~~~~~~  516 (563)
T PLN02860        491 WSDNEKENAKKNLTLSSETLRHHCRE  516 (563)
T ss_pred             cccccchhhcccccccHHHHHHHHhh
Confidence                         3456778888764

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.91  E-value=1.1e-23  Score=149.09  Aligned_cols=90  Identities=23%  Similarity=0.248  Sum_probs=81.5

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||++++++||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++...+
T Consensus       497 ~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~  576 (655)
T PRK03584        497 PGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLD  576 (655)
T ss_pred             CCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCc
Confidence            47999999999999999999999999999999999999999999999999999999999988899999999998765554


Q ss_pred             H---HHHHHHHhc
Q psy5015          84 A---DDIRTFCKG   93 (94)
Q Consensus        84 ~---~~l~~~l~~   93 (94)
                      .   ++|+++|++
T Consensus       577 ~~~~~~l~~~~~~  589 (655)
T PRK03584        577 DALRARIRTTIRT  589 (655)
T ss_pred             HHHHHHHHHHHHh
Confidence            3   467777764

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.91  E-value=1.7e-23  Score=138.91  Aligned_cols=90  Identities=27%  Similarity=0.436  Sum_probs=82.7

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .+|||+|||++++ ++|.+++.||.||+||++|.+|+|.+||++|.+||.|.+|+|++.+++..++.++++++...+...
T Consensus       232 ~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~  310 (358)
T PRK07824        232 EPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAP  310 (358)
T ss_pred             CCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCc
Confidence            4679999999999 799999999999999999999999999999999999999999999988888999999988776667


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++|++++++
T Consensus       311 ~~~~i~~~~~~  321 (358)
T PRK07824        311 TLEALRAHVAR  321 (358)
T ss_pred             CHHHHHHHHHh
Confidence            88889888875

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.90  E-value=4e-23  Score=143.33  Aligned_cols=90  Identities=28%  Similarity=0.410  Sum_probs=84.8

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.+++++++.++...+
T Consensus       380 ~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~  459 (529)
T PRK07867        380 GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD  459 (529)
T ss_pred             CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999988899999999998877788


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++++++|++
T Consensus       460 ~~~l~~~~~~  469 (529)
T PRK07867        460 PDAFAEFLAA  469 (529)
T ss_pred             HHHHHHHHHh
Confidence            8899888864

>PRK09274 peptide synthase; Provisional

Probab=99.90  E-value=4.3e-23  Score=143.24  Aligned_cols=88  Identities=17%  Similarity=0.163  Sum_probs=76.9

Q ss_pred             CC--eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           4 YA--CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         4 ~~--~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +|  ||+|||+|+++++|++++.||.||+||++|.+|+|.+||++|.+||.|.+|+|++.+++ .++.++++|++.++..
T Consensus       417 ~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-~~~~~~~~v~~~~~~~  495 (552)
T PRK09274        417 QGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP-GAQRPVLCVELEPGVA  495 (552)
T ss_pred             CCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC-CCceEEEEEEccCccc
Confidence            45  99999999999999999999999999999999999999999999999999999999875 4567888888887766


Q ss_pred             CCHHHHHHHHh
Q psy5015          82 LNADDIRTFCK   92 (94)
Q Consensus        82 ~~~~~l~~~l~   92 (94)
                      .+.++|.++|+
T Consensus       496 ~~~~~l~~~l~  506 (552)
T PRK09274        496 CSKSALYQELR  506 (552)
T ss_pred             cchHHHhhhhH
Confidence            66555555554

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.90  E-value=7.1e-23  Score=141.02  Aligned_cols=92  Identities=28%  Similarity=0.438  Sum_probs=85.1

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|.|.+++|++.+++..++.+.++|+++++..
T Consensus       395 ~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~  474 (517)
T PRK08008        395 EADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET  474 (517)
T ss_pred             cCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC
Confidence            35789999999999999999999999999999999999999999999999999999999998887888999999988766


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++|+++|++
T Consensus       475 ~~~~~l~~~~~~  486 (517)
T PRK08008        475 LSEEEFFAFCEQ  486 (517)
T ss_pred             CCHHHHHHHHHh
Confidence            778889998875

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.90  E-value=3e-23  Score=146.27  Aligned_cols=89  Identities=28%  Similarity=0.338  Sum_probs=78.8

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCeee--EEEEEeeC-----------------
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--AYAYGVPD-----------------   63 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~-----------------   63 (94)
                      +|||+|||+|+++ +|+|+|+||.||+||++|++|+|.|||++|.+ ||.|.+  ++|+++++                 
T Consensus       463 ~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~  541 (631)
T PRK07769        463 ALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKF  541 (631)
T ss_pred             CCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEeccccccccccccccccccc
Confidence            5899999999995 99999999999999999999999999999996 899997  88998887                 


Q ss_pred             --CCCCceEEEEEEEcCCC-CCCHHHHHHHHhc
Q psy5015          64 --ERMGEEVGISIKLKENA-KLNADDIRTFCKG   93 (94)
Q Consensus        64 --~~~~~~~~~~v~~~~~~-~~~~~~l~~~l~~   93 (94)
                        +..++.++++|++.++. ..+.++|.++|++
T Consensus       542 ~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~  574 (631)
T PRK07769        542 DPEDTSEQLVIVAERAPGAHKLDPQPIADDIRA  574 (631)
T ss_pred             ccCCCCccEEEEEEecCccccccHHHHHHHHHH
Confidence              45778899999988763 4677888888875

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.90  E-value=7.3e-23  Score=137.26  Aligned_cols=84  Identities=12%  Similarity=0.037  Sum_probs=76.8

Q ss_pred             CCCeEEcCceEEE-ecCCeEEEEeecCCeEEeCc---EEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015           3 GYACGLKQDQFVL-REDGYGQVVGRIKDMIIRGG---ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE   78 (94)
Q Consensus         3 ~~~~~~TGD~~~~-~~~G~~~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   78 (94)
                      .+|||+|||+|++ |++|+|+|.||.+     +|   ++|+|. ||++|.+||+|.+|+|++++++..++.++|+|++.+
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~  280 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL  280 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence            5799999999998 6999999999998     88   899999 999999999999999999999999999999999864


Q ss_pred             CCCCCHHHHHHHHhcC
Q psy5015          79 NAKLNADDIRTFCKGK   94 (94)
Q Consensus        79 ~~~~~~~~l~~~l~~~   94 (94)
                        ..+.++|+++|+++
T Consensus       281 --~~~~~el~~~l~~~  294 (365)
T PRK09188        281 --PADEKSLRARLAGA  294 (365)
T ss_pred             --CCCHHHHHHHHHhh
Confidence              46778999999864

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.90  E-value=4.5e-23  Score=144.53  Aligned_cols=92  Identities=26%  Similarity=0.265  Sum_probs=80.2

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCC-CCceEEEEEEEcCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIKLKENAK   81 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~   81 (94)
                      +++||+|||+|+++++|++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++++.+. .+...++++++.++..
T Consensus       437 ~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~  516 (600)
T PRK08279        437 GDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAE  516 (600)
T ss_pred             CCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCcc
Confidence            468999999999999999999999999999999999999999999999999999999998664 3445566666665556


Q ss_pred             CCHHHHHHHHhcC
Q psy5015          82 LNADDIRTFCKGK   94 (94)
Q Consensus        82 ~~~~~l~~~l~~~   94 (94)
                      .+.++++++|+++
T Consensus       517 ~~~~~l~~~l~~~  529 (600)
T PRK08279        517 FDLAALAAHLYER  529 (600)
T ss_pred             CCHHHHHHHHHhh
Confidence            7888999998763

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.90  E-value=7e-23  Score=144.29  Aligned_cols=91  Identities=29%  Similarity=0.364  Sum_probs=80.4

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++++++++...
T Consensus       471 ~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~  550 (629)
T PRK10524        471 GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSL  550 (629)
T ss_pred             CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCcc
Confidence            35899999999999999999999999999999999999999999999999999999999998888999999998765432


Q ss_pred             C--------HHHHHHHHhc
Q psy5015          83 N--------ADDIRTFCKG   93 (94)
Q Consensus        83 ~--------~~~l~~~l~~   93 (94)
                      +        .++|++++++
T Consensus       551 ~~~~~~~~~~~~i~~~~~~  569 (629)
T PRK10524        551 ADREARLALEKEIMALVDS  569 (629)
T ss_pred             ccccchHHHHHHHHHHHHh
Confidence            2        3566666654

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.90  E-value=8.9e-23  Score=146.40  Aligned_cols=90  Identities=28%  Similarity=0.394  Sum_probs=79.1

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHh-cCCCeeeEEEEEeeCCCCC-ceEEEEEEEc--C
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAYAYGVPDERMG-EEVGISIKLK--E   78 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~--~   78 (94)
                      +++||+|||+++++++|+++|+||.||+||++|+||+|.|||++|. .||.|.+++|++++++..+ +.++++|+++  +
T Consensus       587 g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~  666 (728)
T PLN03052        587 GKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPP  666 (728)
T ss_pred             CCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCC
Confidence            3459999999999999999999999999999999999999999995 7999999999999988665 7899999987  5


Q ss_pred             CCCCCHHHHHHHHh
Q psy5015          79 NAKLNADDIRTFCK   92 (94)
Q Consensus        79 ~~~~~~~~l~~~l~   92 (94)
                      +...+.++|+++++
T Consensus       667 g~~~~~~~L~~~i~  680 (728)
T PLN03052        667 GSNPDLNELKKIFN  680 (728)
T ss_pred             CCCCCHHHHHHHHH
Confidence            55566677777654

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.90  E-value=8.2e-23  Score=141.81  Aligned_cols=90  Identities=36%  Similarity=0.536  Sum_probs=84.0

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|+++|.||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.++++|++.++...+
T Consensus       415 ~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~  494 (537)
T PRK13382        415 DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASAT  494 (537)
T ss_pred             CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999888888999999988776677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++++++|++
T Consensus       495 ~~~l~~~l~~  504 (537)
T PRK13382        495 PETLKQHVRD  504 (537)
T ss_pred             HHHHHHHHHH
Confidence            7889888875

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.90  E-value=9.9e-23  Score=141.94  Aligned_cols=92  Identities=34%  Similarity=0.590  Sum_probs=84.8

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      .++|||+|||+++++++|++++.||.+|+||++|.+|+|.+||+.|.+||.|.+++|+++++...++.+++++++.++..
T Consensus       430 ~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~  509 (562)
T PRK05677        430 DSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGET  509 (562)
T ss_pred             CCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCC
Confidence            45789999999999999999999999999999999999999999999999999999999998888888999998877666


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++|++++++
T Consensus       510 ~~~~~l~~~~~~  521 (562)
T PRK05677        510 LTKEQVMEHMRA  521 (562)
T ss_pred             CCHHHHHHHHHH
Confidence            788888888875

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.90  E-value=1.1e-22  Score=140.67  Aligned_cols=91  Identities=37%  Similarity=0.547  Sum_probs=83.8

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|.+||+|.+++|++.++...++.+++++++.++ .
T Consensus       405 ~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~  483 (527)
T TIGR02275       405 DAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-A  483 (527)
T ss_pred             CcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-C
Confidence            457999999999999999999999999999999999999999999999999999999999998888899999988765 4


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+..+|+++|++
T Consensus       484 ~~~~~l~~~l~~  495 (527)
T TIGR02275       484 LKAAQLRRFLRE  495 (527)
T ss_pred             CCHHHHHHHHHh
Confidence            678899999875

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.89  E-value=1.4e-22  Score=138.69  Aligned_cols=92  Identities=35%  Similarity=0.481  Sum_probs=83.4

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +++|||+|||+++++++|.+++.||.+|+||.+|.+|+|.+||++|.++|.|.++++++.+++..++...+++++.++..
T Consensus       358 ~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~  437 (488)
T PRK09088        358 TGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP  437 (488)
T ss_pred             cCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC
Confidence            35799999999999999999999999999999999999999999999999999999999988777788888888877655


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.+++.++|++
T Consensus       438 ~~~~~l~~~~~~  449 (488)
T PRK09088        438 LDLERIRSHLST  449 (488)
T ss_pred             CCHHHHHHHHHh
Confidence            677888888875

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.89  E-value=1.1e-22  Score=142.36  Aligned_cols=90  Identities=29%  Similarity=0.421  Sum_probs=80.9

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC-
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL-   82 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-   82 (94)
                      +|||+|||+|+++++|+++|.||.+|+||++|++|+|.+||++|.+||.|.+++|++.+++..++.++++|++.++... 
T Consensus       419 ~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~  498 (579)
T PLN03102        419 HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK  498 (579)
T ss_pred             cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc
Confidence            5899999999999999999999999999999999999999999999999999999999998888899999998765432 


Q ss_pred             ---------CHHHHHHHHhc
Q psy5015          83 ---------NADDIRTFCKG   93 (94)
Q Consensus        83 ---------~~~~l~~~l~~   93 (94)
                               +..+++++|++
T Consensus       499 ~~~~~~~~~~~~~l~~~~~~  518 (579)
T PLN03102        499 EDRVDKLVTRERDLIEYCRE  518 (579)
T ss_pred             ccccccccccHHHHHHHHHh
Confidence                     35677887765

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.89  E-value=8.9e-23  Score=139.04  Aligned_cols=89  Identities=22%  Similarity=0.393  Sum_probs=81.2

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      ++|||+|||+|+++ +|.++|.||.+|+||++|.+|+|.+||+.|.++|+|.+++|++.+++..++.++++|++..  ..
T Consensus       330 ~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~  406 (458)
T PRK09029        330 DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EA  406 (458)
T ss_pred             CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--cc
Confidence            57899999999999 9999999999999999999999999999999999999999999999888889999988763  35


Q ss_pred             CHHHHHHHHhcC
Q psy5015          83 NADDIRTFCKGK   94 (94)
Q Consensus        83 ~~~~l~~~l~~~   94 (94)
                      +.++|+++|+++
T Consensus       407 ~~~~l~~~~~~~  418 (458)
T PRK09029        407 AVVNLAEWLQDK  418 (458)
T ss_pred             CHHHHHHHHHhh
Confidence            778899888763

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.89  E-value=1.6e-22  Score=140.51  Aligned_cols=90  Identities=28%  Similarity=0.448  Sum_probs=83.4

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.+|+||++|++|+|.+||++|.+||.|.+|+|++.++...++.+++++++.++...+
T Consensus       379 ~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~  458 (540)
T PRK13388        379 HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD  458 (540)
T ss_pred             cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC
Confidence            58999999999999999999999999999999999999999999999999999999999888888888889888877778


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++++++|+.
T Consensus       459 ~~~l~~~l~~  468 (540)
T PRK13388        459 PDAFAAFLAA  468 (540)
T ss_pred             HHHHHHHHHh
Confidence            8888888863

>PLN02246 4-coumarate--CoA ligase

Probab=99.89  E-value=1.7e-22  Score=139.96  Aligned_cols=92  Identities=23%  Similarity=0.314  Sum_probs=84.6

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.++||+|||+++++++|++++.||.+|+||++|.+|+|.+||+.|.++|+|.+++|++.++...++.++++++..++..
T Consensus       409 ~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  488 (537)
T PLN02246        409 DKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE  488 (537)
T ss_pred             cCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC
Confidence            45789999999999999999999999999999999999999999999999999999999988888888999999887766


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++|+++|++
T Consensus       489 ~~~~~l~~~l~~  500 (537)
T PLN02246        489 ITEDEIKQFVAK  500 (537)
T ss_pred             CCHHHHHHHHHh
Confidence            778889988875

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.89  E-value=4.2e-23  Score=146.19  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE   78 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   78 (94)
                      |+++|||+|||+|++++||+++|.||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.   ..++.++|+|++++
T Consensus       483 ~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~  558 (651)
T PLN02736        483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDP  558 (651)
T ss_pred             hccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCH
Confidence            346899999999999999999999999999997 7999999999999999999999999973   34678999999865

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.89  E-value=2.1e-22  Score=143.62  Aligned_cols=91  Identities=20%  Similarity=0.242  Sum_probs=80.2

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      ++|||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++.++...
T Consensus       363 ~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~  442 (705)
T PRK06060        363 NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATI  442 (705)
T ss_pred             CCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCc
Confidence            46899999999999999999999999999999999999999999999999999999999988778889999998765444


Q ss_pred             CH---HHHHHHHhc
Q psy5015          83 NA---DDIRTFCKG   93 (94)
Q Consensus        83 ~~---~~l~~~l~~   93 (94)
                      +.   .+++++|++
T Consensus       443 ~~~~~~~i~~~l~~  456 (705)
T PRK06060        443 DGSVMRDLHRGLLN  456 (705)
T ss_pred             ChHHHHHHHHHHHH
Confidence            43   466666654

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.89  E-value=2.8e-22  Score=137.17  Aligned_cols=90  Identities=34%  Similarity=0.450  Sum_probs=84.5

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.+|+||.+|.+|+|.+||++|.++|+|.++++++.+++..++.++++|+++++...+
T Consensus       370 ~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~  449 (496)
T PRK06839        370 DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLI  449 (496)
T ss_pred             CCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999988889999999998877778


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++++++|++
T Consensus       450 ~~~l~~~~~~  459 (496)
T PRK06839        450 EKDVIEHCRL  459 (496)
T ss_pred             HHHHHHHHHh
Confidence            8889988865

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.89  E-value=3.3e-22  Score=139.00  Aligned_cols=90  Identities=32%  Similarity=0.444  Sum_probs=83.9

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+++++++|+++|.||.+|+||++|.+|+|.+||++|.++|+|.+++|+++++...++.+.+++++.++...+
T Consensus       399 ~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~  478 (542)
T PRK06155        399 NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALE  478 (542)
T ss_pred             CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999887788888899888777788


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      ..+++++|++
T Consensus       479 ~~~~~~~~~~  488 (542)
T PRK06155        479 PVALVRHCEP  488 (542)
T ss_pred             HHHHHHHHHh
Confidence            8899988875

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.89  E-value=3.7e-22  Score=138.30  Aligned_cols=91  Identities=34%  Similarity=0.460  Sum_probs=84.3

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      ++|||+|||+++++++|.+++.||.+|+||++|++|+|.+||++|.+||.|.+++|++.++...++.+.+++++.++...
T Consensus       415 ~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  494 (538)
T TIGR03208       415 AEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTL  494 (538)
T ss_pred             CCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999988788899999999877677


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.+++.+++++
T Consensus       495 ~~~~l~~~~~~  505 (538)
T TIGR03208       495 DFAAMVAFLKA  505 (538)
T ss_pred             CHHHHHHHHHh
Confidence            88888888863

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.89  E-value=1.1e-22  Score=144.39  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=65.2

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      +|||+|||+|++|+||+++|.||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+   .++.++|+|++.
T Consensus       492 dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~  563 (660)
T PLN02861        492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPD  563 (660)
T ss_pred             ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcC
Confidence            689999999999999999999999999996 79999999999999999999999999876   235788888864

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.89  E-value=3e-23  Score=138.90  Aligned_cols=93  Identities=37%  Similarity=0.519  Sum_probs=87.5

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |+.+|||+|||+++++++|++.+.||.+|+|+.+|++|..+|||+.|..||.|.+|++++.++.--|+..+++|+.++. 
T Consensus       410 F~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~-  488 (542)
T COG1021         410 FDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP-  488 (542)
T ss_pred             cCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC-
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999999999764 


Q ss_pred             CCCHHHHHHHHhcC
Q psy5015          81 KLNADDIRTFCKGK   94 (94)
Q Consensus        81 ~~~~~~l~~~l~~~   94 (94)
                      ..+..+|+++|.++
T Consensus       489 ~~~~~qlr~~L~~~  502 (542)
T COG1021         489 PLRAAQLRRFLRER  502 (542)
T ss_pred             CCCHHHHHHHHHHc
Confidence            37888999998753

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.89  E-value=2.6e-22  Score=138.94  Aligned_cols=90  Identities=38%  Similarity=0.600  Sum_probs=83.2

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|.++|+|.+|+|++.++...++.++++|+..+....+
T Consensus       407 ~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~  486 (534)
T PRK05852        407 DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT  486 (534)
T ss_pred             CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999888888899999987665577


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|.++|++
T Consensus       487 ~~~i~~~~~~  496 (534)
T PRK05852        487 AEELVQFCRE  496 (534)
T ss_pred             HHHHHHHHHH
Confidence            8889888875

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.89  E-value=3.4e-22  Score=138.37  Aligned_cols=91  Identities=30%  Similarity=0.476  Sum_probs=82.1

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC--
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA--   80 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--   80 (94)
                      +++||+|||+++++++|++++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.++...++.++++++++++.  
T Consensus       414 ~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~  493 (546)
T PRK08314        414 GKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG  493 (546)
T ss_pred             CCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC
Confidence            456999999999999999999999999999999999999999999999999999999999888888999999987653  


Q ss_pred             CCCHHHHHHHHhc
Q psy5015          81 KLNADDIRTFCKG   93 (94)
Q Consensus        81 ~~~~~~l~~~l~~   93 (94)
                      ..+.++++++|++
T Consensus       494 ~~~~~~l~~~~~~  506 (546)
T PRK08314        494 KTTEEEIIAWARE  506 (546)
T ss_pred             CCCHHHHHHHHHH
Confidence            3456788888875

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.88  E-value=1.9e-22  Score=140.06  Aligned_cols=92  Identities=30%  Similarity=0.399  Sum_probs=84.6

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.+|||+|||+++++++|++++.||.+|+||++|++|+|.+||++|.++|.|.+++|+++++...++.++++|++.++..
T Consensus       414 ~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~  493 (546)
T PLN02330        414 DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK  493 (546)
T ss_pred             cCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCC
Confidence            45799999999999999999999999999999999999999999999999999999999998888889999999887666


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++|++++++
T Consensus       494 ~~~~~l~~~~~~  505 (546)
T PLN02330        494 ESEEDILNFVAA  505 (546)
T ss_pred             CCHHHHHHHHHH
Confidence            777888888875

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.88  E-value=5.2e-22  Score=134.05  Aligned_cols=89  Identities=29%  Similarity=0.432  Sum_probs=81.1

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+++++++|++++.||.|++||++|++|+|.+||+++.++|+|.+++|++.+++..++.+.++++..+  ..
T Consensus       289 ~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~  366 (414)
T PRK08308        289 GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EI  366 (414)
T ss_pred             CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CC
Confidence            3689999999999999999999999999999999999999999999999999999999998888888888888654  46


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++++++|++
T Consensus       367 ~~~~l~~~l~~  377 (414)
T PRK08308        367 DPVQLREWCIQ  377 (414)
T ss_pred             CHHHHHHHHHH
Confidence            77888888875

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=4e-22  Score=138.36  Aligned_cols=90  Identities=26%  Similarity=0.361  Sum_probs=83.2

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|.|.++++++.++...++.++++|+..++...+
T Consensus       408 ~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  487 (539)
T PRK07008        408 DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVT  487 (539)
T ss_pred             CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccC
Confidence            58999999999999999999999999999999999999999999999999999999999887788888888887766677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++++++|++
T Consensus       488 ~~~l~~~~~~  497 (539)
T PRK07008        488 REELLAFYEG  497 (539)
T ss_pred             HHHHHHHHHh
Confidence            8889888875

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.88  E-value=4.1e-22  Score=138.03  Aligned_cols=88  Identities=25%  Similarity=0.201  Sum_probs=72.5

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .+|||+|||+++++ +|+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..++.+.++++.... ..
T Consensus       394 ~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~-~~  471 (525)
T PRK05851        394 PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFR-GP  471 (525)
T ss_pred             CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEec-Cc
Confidence            46899999999997 79999999999999999999999999999999999999999999988777777666654321 23


Q ss_pred             CHHHHHHHHh
Q psy5015          83 NADDIRTFCK   92 (94)
Q Consensus        83 ~~~~l~~~l~   92 (94)
                      +.++++++|+
T Consensus       472 ~~~~~~~~~~  481 (525)
T PRK05851        472 DEAGARSEVV  481 (525)
T ss_pred             chHHHHHHHH
Confidence            4444444443

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.88  E-value=8.5e-22  Score=136.38  Aligned_cols=91  Identities=20%  Similarity=0.151  Sum_probs=81.9

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.++||+|||+|+++++|.+++.||.+++||++|.+|+|.+||+.|.++|.|.+++|++.+. .++..+++++++.++..
T Consensus       403 ~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~~~~~  481 (540)
T PRK06164        403 TDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPTDGAS  481 (540)
T ss_pred             cCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeCCCCC
Confidence            35789999999999999999999999999999999999999999999999999999999874 45567889998877766


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.+++.++|++
T Consensus       482 ~~~~~l~~~~~~  493 (540)
T PRK06164        482 PDEAGLMAACRE  493 (540)
T ss_pred             CCHHHHHHHHHh
Confidence            788889888875

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.88  E-value=1.1e-21  Score=136.09  Aligned_cols=92  Identities=47%  Similarity=0.820  Sum_probs=84.3

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.++||+|||+++++++|++++.||.+++||++|.+|+|.+||++|.++|.|.+++|++.++...++.+++++++.++..
T Consensus       425 ~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  504 (558)
T PRK12583        425 DEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA  504 (558)
T ss_pred             CCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC
Confidence            35789999999999999999999999999999999999999999999999999999999998877888999999887666


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++++++|++
T Consensus       505 ~~~~~i~~~~~~  516 (558)
T PRK12583        505 ASEEELREFCKA  516 (558)
T ss_pred             CCHHHHHHHHHh
Confidence            778888888765

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.88  E-value=7.6e-22  Score=136.19  Aligned_cols=90  Identities=34%  Similarity=0.577  Sum_probs=83.3

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|.++|.|.++++++.++...++.+.++|++.++...+
T Consensus       395 ~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~  474 (516)
T PRK13383        395 DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVD  474 (516)
T ss_pred             cCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999888888999999988776677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .+++++++++
T Consensus       475 ~~~l~~~~~~  484 (516)
T PRK13383        475 AAQLRDYLKD  484 (516)
T ss_pred             HHHHHHHHHH
Confidence            7888888775

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.88  E-value=1.2e-21  Score=136.16  Aligned_cols=90  Identities=33%  Similarity=0.487  Sum_probs=83.3

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.++++|++|.+|+|.+||++|.++|.|.+++|++.+++..++.+++++++.++...+
T Consensus       418 ~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~  497 (547)
T PRK13295        418 DGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLD  497 (547)
T ss_pred             CCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999888888999999988776677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .+++.+++++
T Consensus       498 ~~~l~~~~~~  507 (547)
T PRK13295        498 FEEMVEFLKA  507 (547)
T ss_pred             HHHHHHHHHh
Confidence            7888888764

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.88  E-value=8.1e-22  Score=135.14  Aligned_cols=90  Identities=36%  Similarity=0.489  Sum_probs=83.4

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+++++++|++++.||.|++||++|.+++|.+||+.|.++|+|.+++|++.+++..++.+.+++++.+....+
T Consensus       372 ~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  451 (497)
T PRK06145        372 GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLT  451 (497)
T ss_pred             CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999888888899999988766677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|+++|++
T Consensus       452 ~~~l~~~~~~  461 (497)
T PRK06145        452 LEALDRHCRQ  461 (497)
T ss_pred             HHHHHHHHHH
Confidence            8888888875

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=1.4e-21  Score=134.06  Aligned_cols=91  Identities=41%  Similarity=0.622  Sum_probs=84.1

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+++++++|.+++.||.+|++|++|.+++|.+||++|.++|+|.++++++.++...++.+.++++.+++...
T Consensus       390 ~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~  469 (513)
T PRK07656        390 ADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAEL  469 (513)
T ss_pred             cCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999888888889999998876677


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++|+++|++
T Consensus       470 ~~~~l~~~~~~  480 (513)
T PRK07656        470 TEEELIAYCRE  480 (513)
T ss_pred             CHHHHHHHHHh
Confidence            88889888875

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.88  E-value=9.1e-22  Score=137.31  Aligned_cols=90  Identities=32%  Similarity=0.445  Sum_probs=80.8

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.+|+||++|++|+|.+||+.|.+||.|.+++|++.+++..++.+++++++.++...+
T Consensus       431 ~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~  510 (570)
T PRK04319        431 GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPS  510 (570)
T ss_pred             CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999988899999999988764433


Q ss_pred             H---HHHHHHHhc
Q psy5015          84 A---DDIRTFCKG   93 (94)
Q Consensus        84 ~---~~l~~~l~~   93 (94)
                      .   ++|+++|++
T Consensus       511 ~~~~~~l~~~~~~  523 (570)
T PRK04319        511 EELKEEIRGFVKK  523 (570)
T ss_pred             HHHHHHHHHHHHH
Confidence            2   567777764

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.88  E-value=1e-21  Score=136.82  Aligned_cols=91  Identities=27%  Similarity=0.474  Sum_probs=83.9

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|+++++||.+|+||++|.+|+|.+||+++.++|.|.++++++.++...++.+++++++.++...+
T Consensus       441 dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~  520 (567)
T PRK06178        441 DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLT  520 (567)
T ss_pred             CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCC
Confidence            58999999999999999999999999999999999999999999999999999999998887788899999988776678


Q ss_pred             HHHHHHHHhcC
Q psy5015          84 ADDIRTFCKGK   94 (94)
Q Consensus        84 ~~~l~~~l~~~   94 (94)
                      .++|+++++++
T Consensus       521 ~~~l~~~~~~~  531 (567)
T PRK06178        521 AAALQAWCREN  531 (567)
T ss_pred             HHHHHHHHHhc
Confidence            88899888763

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.88  E-value=1.4e-21  Score=134.47  Aligned_cols=91  Identities=35%  Similarity=0.659  Sum_probs=83.8

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +.+||+|||+++++++|++++.||.++++|.+|.+|+|.+||+++.++|.|.++++++.+++..++.+.+++++.++...
T Consensus       406 ~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  485 (533)
T PRK07798        406 GVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARP  485 (533)
T ss_pred             CCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCC
Confidence            45799999999999999999999999999999999999999999999999999999999888778889999998877667


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.+++++++++
T Consensus       486 ~~~~l~~~l~~  496 (533)
T PRK07798        486 DLAELRAHCRS  496 (533)
T ss_pred             CHHHHHHHHhh
Confidence            88889888875

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.88  E-value=1.2e-21  Score=135.75  Aligned_cols=90  Identities=36%  Similarity=0.512  Sum_probs=83.2

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.++++|++|.+|+|.+||++|.++|.|.+++|++.+++..++.+++++++.++...+
T Consensus       415 ~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~  494 (545)
T PRK08162        415 GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASAT  494 (545)
T ss_pred             CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCC
Confidence            57999999999999999999999999999999999999999999999999999999998887788899999988776677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|+++|++
T Consensus       495 ~~~l~~~~~~  504 (545)
T PRK08162        495 EEEIIAHCRE  504 (545)
T ss_pred             HHHHHHHHHH
Confidence            8889888865

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.4e-21  Score=135.02  Aligned_cols=90  Identities=33%  Similarity=0.475  Sum_probs=82.9

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+++++++|++++.||.||++|++|.+|+|.+||++|.++|.|.+++|++.+++..++.++++++..++...+
T Consensus       393 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  472 (528)
T PRK07470        393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVD  472 (528)
T ss_pred             CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999887788888888887766678


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++++++|++
T Consensus       473 ~~~~~~~l~~  482 (528)
T PRK07470        473 EAELLAWLDG  482 (528)
T ss_pred             HHHHHHHHHH
Confidence            8888888875

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.87  E-value=1.3e-21  Score=136.41  Aligned_cols=90  Identities=38%  Similarity=0.670  Sum_probs=83.6

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.||++|++|.+|+|.+||+++.++|.|.++++++.++...++.+++++++.++...+
T Consensus       444 ~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~  523 (573)
T PRK05605        444 DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD  523 (573)
T ss_pred             CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC
Confidence            46999999999999999999999999999999999999999999999999999999999888888999999988776778


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|++++++
T Consensus       524 ~~~l~~~~~~  533 (573)
T PRK05605        524 PEGLRAYCRE  533 (573)
T ss_pred             HHHHHHHHHH
Confidence            8888888875

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.87  E-value=1.1e-21  Score=136.02  Aligned_cols=90  Identities=39%  Similarity=0.531  Sum_probs=82.5

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.++||+|||+++++++|++++.||.+|++|++|.+|+|.+||+.|.++|+|.++++++.++...++.+++++++.++  
T Consensus       406 ~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--  483 (536)
T PRK10946        406 DANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--  483 (536)
T ss_pred             ccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--
Confidence            457999999999999999999999999999999999999999999999999999999999988888889999988764  


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.+++++++++
T Consensus       484 ~~~~~l~~~~~~  495 (536)
T PRK10946        484 LKAVQLRRFLRE  495 (536)
T ss_pred             CCHHHHHHHHHh
Confidence            677888888864

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.87  E-value=1.2e-21  Score=140.15  Aligned_cols=87  Identities=16%  Similarity=0.195  Sum_probs=77.2

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+|++++||+++|.||.||+||++|++|+|.|||+++.+|+.+.++++++.+++..++.+++++.   +...+
T Consensus       590 ~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~~  666 (718)
T PRK08043        590 RGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSELT  666 (718)
T ss_pred             CCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---CcccC
Confidence            689999999999999999999999999999999999999999999999888888888888878888877653   33467


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++++++|++
T Consensus       667 ~~~l~~~~~~  676 (718)
T PRK08043        667 REKLQQYARE  676 (718)
T ss_pred             HHHHHHHHHh
Confidence            7889988875

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.87  E-value=1.6e-21  Score=134.07  Aligned_cols=90  Identities=36%  Similarity=0.504  Sum_probs=79.8

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+++++++|++++.||.|++||++|.+|+|.+||++|.+||.|.++++++.+++..++.+++++++.++...+
T Consensus       378 ~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~  457 (501)
T PRK13390        378 PFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGS  457 (501)
T ss_pred             CceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999988888999999887654333


Q ss_pred             ---HHHHHHHHhc
Q psy5015          84 ---ADDIRTFCKG   93 (94)
Q Consensus        84 ---~~~l~~~l~~   93 (94)
                         .++|++++++
T Consensus       458 ~~~~~~l~~~~~~  470 (501)
T PRK13390        458 DELARELIDYTRS  470 (501)
T ss_pred             hhhHHHHHHHHHH
Confidence               3467776654

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.87  E-value=6.9e-22  Score=140.63  Aligned_cols=72  Identities=17%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE   78 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   78 (94)
                      +|||+|||+|++|+||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+++|++....   ..++|+|++..
T Consensus       495 dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~  567 (666)
T PLN02614        495 DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQ  567 (666)
T ss_pred             cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCH
Confidence            689999999999999999999999999996 7999999999999999999999999987532   25888888643

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.87  E-value=2.2e-21  Score=133.09  Aligned_cols=91  Identities=38%  Similarity=0.538  Sum_probs=83.6

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .++||+|||+++++++|.+++.||.||+||++|.+|+|.+||+++.++++|.++++++.++...++.++++++..++...
T Consensus       375 ~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  454 (504)
T PRK07514        375 ADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAAL  454 (504)
T ss_pred             cCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999888778889999998876667


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.+++++++++
T Consensus       455 ~~~~l~~~~~~  465 (504)
T PRK07514        455 DEAAILAALKG  465 (504)
T ss_pred             CHHHHHHHHHh
Confidence            77888888775

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.87  E-value=1.1e-21  Score=136.97  Aligned_cols=91  Identities=26%  Similarity=0.398  Sum_probs=82.3

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC-
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-   81 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-   81 (94)
                      .+|||+|||+++++++|.++|.||.+|+||++|.+|+|.+||++|.+||.|.+++|++.++...++.+++++++.++.. 
T Consensus       428 ~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~  507 (576)
T PRK05620        428 ADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEP  507 (576)
T ss_pred             cCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCc
Confidence            4689999999999999999999999999999999999999999999999999999999999888888999998877643 


Q ss_pred             --CCHHHHHHHHhc
Q psy5015          82 --LNADDIRTFCKG   93 (94)
Q Consensus        82 --~~~~~l~~~l~~   93 (94)
                        .+.++|+++|++
T Consensus       508 ~~~~~~~l~~~l~~  521 (576)
T PRK05620        508 TRETAERLRDQLRD  521 (576)
T ss_pred             ccccHHHHHHHHHh
Confidence              346788888875

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.87  E-value=2.6e-21  Score=134.30  Aligned_cols=92  Identities=27%  Similarity=0.365  Sum_probs=84.8

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.+|||+|||+++++++|++++.||.+|+|+++|.+|+|.+||+++.+||.|.+|+|++.+++..++.+.+++++.++..
T Consensus       407 ~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  486 (542)
T PRK06018        407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET  486 (542)
T ss_pred             cCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC
Confidence            35789999999999999999999999999999999999999999999999999999999998887888999999888777


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.+++++++++
T Consensus       487 ~~~~~l~~~~~~  498 (542)
T PRK06018        487 ATREEILKYMDG  498 (542)
T ss_pred             CCHHHHHHHHHh
Confidence            788888888875

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.87  E-value=1.8e-21  Score=135.53  Aligned_cols=90  Identities=34%  Similarity=0.509  Sum_probs=83.7

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|.+++.||.||+||++|.+|+|.+||++|.++|.|.+++|++.++...++.++++++..++...+
T Consensus       430 ~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~  509 (563)
T PRK06710        430 DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS  509 (563)
T ss_pred             cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999888888999999988876677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .+++++++++
T Consensus       510 ~~~l~~~~~~  519 (563)
T PRK06710        510 EEELNQFARK  519 (563)
T ss_pred             HHHHHHHHHH
Confidence            8888888865

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.87  E-value=2e-21  Score=132.92  Aligned_cols=89  Identities=31%  Similarity=0.440  Sum_probs=80.1

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeec-CCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +++||+|||+++++++|++++.||. |+++|++|.+|+|.+||++|.++|.|.+++|++.++...++.+++++++.+  .
T Consensus       348 ~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~  425 (471)
T PRK07787        348 ADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGAD--D  425 (471)
T ss_pred             CCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCC--C
Confidence            4789999999999999999999996 899999999999999999999999999999999988877889999988743  3


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.+++.++|++
T Consensus       426 ~~~~~l~~~l~~  437 (471)
T PRK07787        426 VAADELIDFVAQ  437 (471)
T ss_pred             CCHHHHHHHHHh
Confidence            677788888765

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.87  E-value=1e-21  Score=138.23  Aligned_cols=88  Identities=26%  Similarity=0.318  Sum_probs=74.2

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCeee--EEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--AYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      ++||+|||+|+++ +|+|+|.||.||+||++|++|+|.|||++|.+ ||.|.+  +++++.+++. ++.++++++++++.
T Consensus       475 ~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~  552 (612)
T PRK12476        475 GTWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGT  552 (612)
T ss_pred             CCeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCc
Confidence            4699999999985 99999999999999999999999999999985 899999  6677777765 78889999887764


Q ss_pred             C-CCHHHHHHHHhc
Q psy5015          81 K-LNADDIRTFCKG   93 (94)
Q Consensus        81 ~-~~~~~l~~~l~~   93 (94)
                      . .+.++|.++|++
T Consensus       553 ~~~~~~~l~~~~~~  566 (612)
T PRK12476        553 SRADPAPAIDAIRA  566 (612)
T ss_pred             ccccHHHHHHHHHH
Confidence            2 566666666653

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.8e-21  Score=133.43  Aligned_cols=87  Identities=36%  Similarity=0.526  Sum_probs=78.4

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .+|||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|+|.+++|++.+++..++.+++++..    ..
T Consensus       359 ~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~  434 (487)
T PRK07638        359 ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SA  434 (487)
T ss_pred             cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CC
Confidence            46899999999999999999999999999999999999999999999999999999999988788888888763    35


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++++++|++
T Consensus       435 ~~~~l~~~~~~  445 (487)
T PRK07638        435 TKQQLKSFCLQ  445 (487)
T ss_pred             CHHHHHHHHHH
Confidence            66778887764

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.87  E-value=3.2e-21  Score=134.40  Aligned_cols=91  Identities=37%  Similarity=0.665  Sum_probs=81.4

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +++|||+|||+++++++|.++|.||.+++||++|.+|+|.+||+.|.+||.|.++++++.++...++.+.+++++.+. .
T Consensus       438 ~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~  516 (562)
T PRK12492        438 DAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-G  516 (562)
T ss_pred             cCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-C
Confidence            357899999999999999999999999999999999999999999999999999999999888788888888887543 3


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.+++++++++
T Consensus       517 ~~~~~i~~~~~~  528 (562)
T PRK12492        517 LSVEELKAYCKE  528 (562)
T ss_pred             CCHHHHHHHHHH
Confidence            567788888765

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.87  E-value=4e-21  Score=132.28  Aligned_cols=91  Identities=34%  Similarity=0.527  Sum_probs=83.2

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .++||+|||+++++++|.+++.||.+|+||++|.+|+|.+||+.|.++|.|.++++++.++...++.+++++++.++...
T Consensus       377 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  456 (509)
T PRK12406        377 RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATL  456 (509)
T ss_pred             CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999988778889999998776666


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++|++++++
T Consensus       457 ~~~~l~~~l~~  467 (509)
T PRK12406        457 DEADIRAQLKA  467 (509)
T ss_pred             CHHHHHHHHHH
Confidence            77888888765

>PRK08315 AMP-binding domain protein; Validated

Probab=99.87  E-value=3.9e-21  Score=133.45  Aligned_cols=91  Identities=53%  Similarity=0.895  Sum_probs=83.3

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .++||+|||+++++++|.+++.||.++++|++|.+|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...
T Consensus       425 ~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  504 (559)
T PRK08315        425 ADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATL  504 (559)
T ss_pred             CCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999888777888899988776667


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.+++++++++
T Consensus       505 ~~~~l~~~l~~  515 (559)
T PRK08315        505 TEEDVRDFCRG  515 (559)
T ss_pred             CHHHHHHHHHh
Confidence            78888888875

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.87  E-value=2.3e-21  Score=134.92  Aligned_cols=86  Identities=14%  Similarity=0.168  Sum_probs=69.8

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeee------EEEEEeeCCCCCceEEEEEE
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE------AYAYGVPDERMGEEVGISIK   75 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~   75 (94)
                      +++|||+|||+|+++++|+++|.||.+|+||++|++|+|.|||++|.+||+|.+      ++|++.++.  ...++++++
T Consensus       407 ~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~  484 (539)
T PRK06334        407 GGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTT  484 (539)
T ss_pred             CCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEe
Confidence            357899999999999999999999999999999999999999999999999987      677766643  223444444


Q ss_pred             EcCCCCCCHHHHHHHHhc
Q psy5015          76 LKENAKLNADDIRTFCKG   93 (94)
Q Consensus        76 ~~~~~~~~~~~l~~~l~~   93 (94)
                      ..    .+.++++++|++
T Consensus       485 ~~----~~~~~~~~~l~~  498 (539)
T PRK06334        485 FP----TSISEVNDILKN  498 (539)
T ss_pred             cc----CChHHHHHHHHh
Confidence            21    356778888765

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.87  E-value=1.5e-21  Score=140.50  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=65.8

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      |+.+|||+|||+|++++||+|+|+||.+|+||+ +|++|+|.+||+++.+||.|.+|+|++..   ....++|+|++.
T Consensus       566 f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~---~~~~~~Alvv~d  640 (746)
T PTZ00342        566 FTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD---SMDGPLAIISVD  640 (746)
T ss_pred             cCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC---CccccEEEEECC
Confidence            456899999999999999999999999999995 79999999999999999999999999863   233688888864

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.87  E-value=2.2e-21  Score=145.75  Aligned_cols=75  Identities=21%  Similarity=0.099  Sum_probs=70.3

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      +++||+|||+|++++||.++|.||.||+||++|+||+|.|||++|.+||.|.+++|++.++...+..+++++++.
T Consensus       676 ~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~  750 (1389)
T TIGR03443       676 RDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQ  750 (1389)
T ss_pred             ccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEecc
Confidence            368999999999999999999999999999999999999999999999999999999888877778899999876

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.86  E-value=4.1e-21  Score=131.90  Aligned_cols=90  Identities=27%  Similarity=0.420  Sum_probs=82.7

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|.|.+++|++.+++..++.++++++..++...+
T Consensus       393 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~  472 (515)
T TIGR03098       393 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELD  472 (515)
T ss_pred             ccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCC
Confidence            45899999999999999999999999999999999999999999999999999999999888889999998876666678


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|+++|++
T Consensus       473 ~~~l~~~l~~  482 (515)
T TIGR03098       473 RAALLAECRA  482 (515)
T ss_pred             HHHHHHHHHh
Confidence            8888888875

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.86  E-value=4.2e-21  Score=131.97  Aligned_cols=90  Identities=37%  Similarity=0.516  Sum_probs=83.0

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+|+++++|.+++.||.+++||++|.+|+|.+||+.|.++|.|.++++++.+++..++.+++++++.++...+
T Consensus       394 ~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  473 (523)
T PRK08316        394 GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVT  473 (523)
T ss_pred             CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999888888999999988766677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .+++.+++++
T Consensus       474 ~~~l~~~~~~  483 (523)
T PRK08316        474 EDELIAHCRA  483 (523)
T ss_pred             HHHHHHHHHH
Confidence            7788887764

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.86  E-value=4.4e-21  Score=133.42  Aligned_cols=91  Identities=40%  Similarity=0.595  Sum_probs=80.0

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +++|||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|..+|.|.+++|++.++...++.+.++++.. +..
T Consensus       434 ~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~  512 (560)
T PRK08751        434 DADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPA  512 (560)
T ss_pred             ccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCC
Confidence            3578999999999999999999999999999999999999999999999999999999999887787777777654 345


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.+++++++++
T Consensus       513 ~~~~~l~~~~~~  524 (560)
T PRK08751        513 LTAEDVKAHARA  524 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            677788887764

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.86  E-value=8e-21  Score=131.16  Aligned_cols=90  Identities=34%  Similarity=0.571  Sum_probs=83.1

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|++++.||.+++++++|.+|+|.+||++|.++|+|.+++|++.+++..++.+.+++++.+....+
T Consensus       392 ~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  471 (524)
T PRK06188        392 DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVD  471 (524)
T ss_pred             CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999998887788999999988766677


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|+++|++
T Consensus       472 ~~~l~~~~~~  481 (524)
T PRK06188        472 AAELQAHVKE  481 (524)
T ss_pred             HHHHHHHHHH
Confidence            7888888865

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.86  E-value=4.9e-21  Score=133.04  Aligned_cols=76  Identities=34%  Similarity=0.522  Sum_probs=70.4

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN   79 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~   79 (94)
                      +|||+|||+|+++++|++++.||.+++||++|.+|+|.+||++|..||.|.+|+|++.++...++.++++++..+.
T Consensus       401 ~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~  476 (540)
T PRK05857        401 DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAE  476 (540)
T ss_pred             CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCC
Confidence            5899999999999999999999999999999999999999999999999999999999987777788888876543

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.85  E-value=5.1e-21  Score=133.87  Aligned_cols=89  Identities=26%  Similarity=0.390  Sum_probs=76.6

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCee--eEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      .++||+|||++++ ++|+++|+||.||+||++|++|+|.+||++|++||.|.  ++++++.+++. ++.++++++..++.
T Consensus       437 ~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~  514 (579)
T PRK09192        437 ADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISD  514 (579)
T ss_pred             CCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCC
Confidence            4789999999999 89999999999999999999999999999999999998  89999988875 45788888776554


Q ss_pred             CCCHHHHHHHHhc
Q psy5015          81 KLNADDIRTFCKG   93 (94)
Q Consensus        81 ~~~~~~l~~~l~~   93 (94)
                      ..+.++|++++++
T Consensus       515 ~~~~~~l~~~~~~  527 (579)
T PRK09192        515 EERRGQLIHALAA  527 (579)
T ss_pred             hHHHHHHHHHHHH
Confidence            5566677777654

>PLN02479 acetate-CoA ligase

Probab=99.85  E-value=5.8e-21  Score=133.31  Aligned_cols=90  Identities=41%  Similarity=0.551  Sum_probs=79.3

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC--
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK--   81 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--   81 (94)
                      +|||+|||+++++++|+++|.||.+|+||++|.+|+|.+||++|.+||.|.+++|++.++...++.+++++++.++..  
T Consensus       429 ~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  508 (567)
T PLN02479        429 NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKS  508 (567)
T ss_pred             CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccccc
Confidence            579999999999999999999999999999999999999999999999999999999988777888999999876532  


Q ss_pred             ---CCHHHHHHHHhc
Q psy5015          82 ---LNADDIRTFCKG   93 (94)
Q Consensus        82 ---~~~~~l~~~l~~   93 (94)
                         ...++|.+++++
T Consensus       509 ~~~~~~~~l~~~~~~  523 (567)
T PLN02479        509 DEAALAEDIMKFCRE  523 (567)
T ss_pred             chhhhHHHHHHHHHh
Confidence               234567777654

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.85  E-value=7.2e-21  Score=135.99  Aligned_cols=71  Identities=17%  Similarity=0.120  Sum_probs=63.5

Q ss_pred             CeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015           5 ACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE   78 (94)
Q Consensus         5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   78 (94)
                      |||+|||+|++++||+++|.||.||+||+ +|++|+|.+||++|.+||.|.+++|++.+.   ...++++|++.+
T Consensus       535 ~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~~  606 (696)
T PLN02387        535 RWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF---HSYCVALVVPSQ  606 (696)
T ss_pred             ceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEEeCH
Confidence            49999999999999999999999999997 699999999999999999999999998653   235778888643

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.85  E-value=1.2e-20  Score=129.64  Aligned_cols=91  Identities=38%  Similarity=0.611  Sum_probs=79.9

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+++++++|.+++.||.|+++|++|.+|+|.+||.+|.++|.|.++++++..++..++.++++++++++...
T Consensus       367 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  446 (502)
T PRK08276        367 PHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADA  446 (502)
T ss_pred             CCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCC
Confidence            35999999999999999999999999999999999999999999999999999999999988888899999998765443


Q ss_pred             CH---HHHHHHHhc
Q psy5015          83 NA---DDIRTFCKG   93 (94)
Q Consensus        83 ~~---~~l~~~l~~   93 (94)
                      +.   +++++++++
T Consensus       447 ~~~~~~~i~~~~~~  460 (502)
T PRK08276        447 GDALAAELIAWLRG  460 (502)
T ss_pred             ChhhHHHHHHHHHh
Confidence            33   356666654

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.85  E-value=1.8e-20  Score=130.34  Aligned_cols=91  Identities=43%  Similarity=0.692  Sum_probs=81.2

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      ..+|||+|||+++++++|.+++.||.+++||++|.+|+|.+||+++.++|+|.++++++.++...++.++++++..+ ..
T Consensus       432 ~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~~  510 (557)
T PRK07059        432 TADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PA  510 (557)
T ss_pred             ccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-CC
Confidence            35799999999999999999999999999999999999999999999999999999999998888888888888654 34


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++++++|++
T Consensus       511 ~~~~~l~~~~~~  522 (557)
T PRK07059        511 LTEEDVKAFCKE  522 (557)
T ss_pred             CCHHHHHHHHHH
Confidence            667788887765

>PRK12316 peptide synthase; Provisional

Probab=99.85  E-value=8.3e-21  Score=153.52  Aligned_cols=90  Identities=24%  Similarity=0.247  Sum_probs=82.6

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+|++++||.++|+||.|++||++|+||+|.|||++|.++|+|.+++|++.++. .++.++++|++.++...
T Consensus      2379 ~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~ 2457 (5163)
T PRK12316       2379 GERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAED 2457 (5163)
T ss_pred             CCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCcc
Confidence            45799999999999999999999999999999999999999999999999999999988765 77889999998877677


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++|+++|++
T Consensus      2458 ~~~~l~~~l~~ 2468 (5163)
T PRK12316       2458 LLAELRAWLAA 2468 (5163)
T ss_pred             CHHHHHHHHHh
Confidence            88889998875

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.85  E-value=1.8e-20  Score=129.21  Aligned_cols=90  Identities=37%  Similarity=0.586  Sum_probs=79.9

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC-
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL-   82 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-   82 (94)
                      ++||+|||+++++++|.+++.||.+|++|++|.+|+|.+||++|.+||.|.++++++.++...++.+++++++.++... 
T Consensus       381 ~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~  460 (511)
T PRK13391        381 GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPG  460 (511)
T ss_pred             CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcc
Confidence            4899999999999999999999999999999999999999999999999999999999988888889888887664332 


Q ss_pred             --CHHHHHHHHhc
Q psy5015          83 --NADDIRTFCKG   93 (94)
Q Consensus        83 --~~~~l~~~l~~   93 (94)
                        ..++++++|++
T Consensus       461 ~~~~~~l~~~~~~  473 (511)
T PRK13391        461 PALAAELIAFCRQ  473 (511)
T ss_pred             cchHHHHHHHHHh
Confidence              24678888765

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.85  E-value=1.4e-20  Score=139.38  Aligned_cols=88  Identities=20%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      ++|||+|||++++++||++++.||.||+||++|++|+|.|||+++.+||.+.+++|++.+++..++.+++++.   +...
T Consensus      1008 ~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~ 1084 (1140)
T PRK06814       1008 ADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDA 1084 (1140)
T ss_pred             CCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCc
Confidence            4789999999999999999999999999999999999999999999999999999999998888888776654   2345


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.+++.+++++
T Consensus      1085 ~~~~l~~~~~~ 1095 (1140)
T PRK06814       1085 TRAAFLAHAKA 1095 (1140)
T ss_pred             CHHHHHHHHHH
Confidence            67788888764

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.85  E-value=1.5e-20  Score=130.45  Aligned_cols=91  Identities=34%  Similarity=0.602  Sum_probs=81.6

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC-CC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE-NA   80 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~   80 (94)
                      +.++||+|||+++++++|++++.||.+|+|+.+|.+|+|.+||++|.++|+|.++++++.+++..++.+++++++.+ ..
T Consensus       407 ~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~  486 (547)
T PRK06087        407 DEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH  486 (547)
T ss_pred             CCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC
Confidence            35789999999999999999999999999999999999999999999999999999999998888889999999875 34


Q ss_pred             CCCHHHHHHHHh
Q psy5015          81 KLNADDIRTFCK   92 (94)
Q Consensus        81 ~~~~~~l~~~l~   92 (94)
                      ..+.+++.++++
T Consensus       487 ~~~~~~~~~~~~  498 (547)
T PRK06087        487 SLTLEEVVAFFS  498 (547)
T ss_pred             CCCHHHHHHHHH
Confidence            466777877764

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.85  E-value=2e-20  Score=139.67  Aligned_cols=91  Identities=18%  Similarity=0.154  Sum_probs=77.7

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEee------CCCCCceEEEEEEE
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP------DERMGEEVGISIKL   76 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~------~~~~~~~~~~~v~~   76 (94)
                      +++||+|||+|+++++|.++++||.|++||++|++|+|.|||++|.+||+|.+++|+...      .......++++++.
T Consensus       835 ~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~  914 (1296)
T PRK10252        835 GERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVS  914 (1296)
T ss_pred             CCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEc
Confidence            456999999999999999999999999999999999999999999999999999877653      11122478899998


Q ss_pred             cCCCCCCHHHHHHHHhc
Q psy5015          77 KENAKLNADDIRTFCKG   93 (94)
Q Consensus        77 ~~~~~~~~~~l~~~l~~   93 (94)
                      .++...+.++|++++++
T Consensus       915 ~~~~~~~~~~l~~~l~~  931 (1296)
T PRK10252        915 QSGLPLDTSALQAQLRE  931 (1296)
T ss_pred             CCCCCCCHHHHHHHHHh
Confidence            77666778889988875

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.84  E-value=3e-20  Score=128.92  Aligned_cols=90  Identities=40%  Similarity=0.583  Sum_probs=81.5

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC-CC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-KL   82 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~   82 (94)
                      ++||+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|.|.+++|++.+++..++.+++++++.++. ..
T Consensus       420 ~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  499 (541)
T TIGR03205       420 GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPF  499 (541)
T ss_pred             cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcC
Confidence            47999999999999999999999999999999999999999999999999999999999887788899999987654 35


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.+++++++++
T Consensus       500 ~~~~l~~~~~~  510 (541)
T TIGR03205       500 SLDELRAFLAG  510 (541)
T ss_pred             CHHHHHHHHHh
Confidence            67888888765

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK12316 peptide synthase; Provisional

Probab=99.84  E-value=1.3e-20  Score=152.51  Aligned_cols=88  Identities=24%  Similarity=0.211  Sum_probs=80.2

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+|++++||.++|+||.|++||++|+||+|.|||++|.+||.|.+|+|++.+    ++.++++|++.++...
T Consensus       884 ~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~  959 (5163)
T PRK12316        884 GERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGD  959 (5163)
T ss_pred             CCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCC
Confidence            567999999999999999999999999999999999999999999999999999999886    5689999998876667


Q ss_pred             CHHHHHHHHhcC
Q psy5015          83 NADDIRTFCKGK   94 (94)
Q Consensus        83 ~~~~l~~~l~~~   94 (94)
                      ..++|+++|+++
T Consensus       960 ~~~~l~~~l~~~  971 (5163)
T PRK12316        960 WREALKAHLAAS  971 (5163)
T ss_pred             CHHHHHHHHHhh
Confidence            788899988753

>PRK12467 peptide synthase; Provisional

Probab=99.84  E-value=1.4e-20  Score=150.53  Aligned_cols=91  Identities=22%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+|++++||+++|+||.|++||++|+||+|.|||++|.++|+|.+|+|++... ..++.+++++++......
T Consensus      3469 g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~ 3547 (3956)
T PRK12467       3469 GGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGD 3547 (3956)
T ss_pred             CceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcc
Confidence            4578999999999999999999999999999999999999999999999999999998754 467789999998765556


Q ss_pred             CHHHHHHHHhcC
Q psy5015          83 NADDIRTFCKGK   94 (94)
Q Consensus        83 ~~~~l~~~l~~~   94 (94)
                      ..++++++|+++
T Consensus      3548 ~~~~l~~~l~~~ 3559 (3956)
T PRK12467       3548 WRETLRDHLAAS 3559 (3956)
T ss_pred             cHHHHHHHHhcc
Confidence            678888888753

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.84  E-value=5.3e-20  Score=126.22  Aligned_cols=90  Identities=43%  Similarity=0.667  Sum_probs=83.0

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+++++++|.+++.||.++++|++|.+++|.+||+.|.++|+|.++++++.+++..++.+.+++++.++...+
T Consensus       394 ~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  473 (521)
T PRK06187        394 GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLD  473 (521)
T ss_pred             CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCC
Confidence            46999999999999999999999999999999999999999999999999999999998887788999999988877778


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .+++++++++
T Consensus       474 ~~~l~~~l~~  483 (521)
T PRK06187        474 AKELRAFLRG  483 (521)
T ss_pred             HHHHHHHHHH
Confidence            8888888765

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.84  E-value=5.9e-20  Score=125.98  Aligned_cols=90  Identities=16%  Similarity=0.011  Sum_probs=73.5

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEee-CCCCCceEEEEEEEcCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP-DERMGEEVGISIKLKENAK   81 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.+||+|||+|+++++ ++++.||.+|+||++|.+|+|.+||+.+.++|.|.++++++.. .....+.+++++++.+...
T Consensus       372 ~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~  450 (502)
T TIGR01734       372 GQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDF  450 (502)
T ss_pred             CcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccccc
Confidence            3469999999999976 9999999999999999999999999999999999999999876 3445677888888765432


Q ss_pred             CCH----HHHHHHHhc
Q psy5015          82 LNA----DDIRTFCKG   93 (94)
Q Consensus        82 ~~~----~~l~~~l~~   93 (94)
                      ...    .++++++++
T Consensus       451 ~~~~~~~~~i~~~~~~  466 (502)
T TIGR01734       451 EKEFQLTKAIKKELKK  466 (502)
T ss_pred             ccchhhHHHHHHHHhh
Confidence            221    455666553

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.84  E-value=5.4e-20  Score=127.75  Aligned_cols=90  Identities=34%  Similarity=0.510  Sum_probs=80.4

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC-CC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-KL   82 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~   82 (94)
                      ++||+|||+++++++|.+++.||.+|+||++|.+|+|.+||++|.++|.|.+++|++.++...++.+++++++.+.. ..
T Consensus       398 ~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  477 (542)
T PRK07786        398 GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAAL  477 (542)
T ss_pred             CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999998877788888888877543 35


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      ..+++.++|++
T Consensus       478 ~~~~l~~~l~~  488 (542)
T PRK07786        478 TLEDLAEFLTD  488 (542)
T ss_pred             CHHHHHHHHHh
Confidence            66788888765

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.84  E-value=4.4e-20  Score=124.69  Aligned_cols=89  Identities=30%  Similarity=0.435  Sum_probs=79.5

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .++||+|||+++++++|.+++.||.+|++|++|.+|+|.+||++|.++|.|.++++++.++...+..+.+++++.++  .
T Consensus       318 ~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~  395 (436)
T TIGR01923       318 QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--I  395 (436)
T ss_pred             cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--C
Confidence            36899999999999999999999999999999999999999999999999999999998877777788888887653  5


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.+++.++|++
T Consensus       396 ~~~~l~~~l~~  406 (436)
T TIGR01923       396 SQAKLIAYLTE  406 (436)
T ss_pred             CHHHHHHHHHH
Confidence            67778877764

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.84  E-value=2.7e-20  Score=137.40  Aligned_cols=88  Identities=22%  Similarity=0.266  Sum_probs=77.5

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCC--CeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      ++|||+|||++++++||++++.||.||+||++|++|+|.|||++|.+||  .+.+++|++.+++..++.++++++..   
T Consensus      1017 ~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~--- 1093 (1146)
T PRK08633       1017 GIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG--- 1093 (1146)
T ss_pred             CCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC---
Confidence            4599999999999999999999999999999999999999999999998  46679999999988888888888762   


Q ss_pred             CCCHHHHHHHHhc
Q psy5015          81 KLNADDIRTFCKG   93 (94)
Q Consensus        81 ~~~~~~l~~~l~~   93 (94)
                      ..+.+++++++++
T Consensus      1094 ~~~~~~l~~~~~~ 1106 (1146)
T PRK08633       1094 AEDVEELKRAIKE 1106 (1146)
T ss_pred             ccCHHHHHHHHHh
Confidence            3566778877753

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.84  E-value=3.3e-20  Score=132.00  Aligned_cols=72  Identities=18%  Similarity=0.188  Sum_probs=65.2

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEe-CcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE   78 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   78 (94)
                      +|||+|||+|++++||+++|.||.+|+||. +|++|+|.+||+++.+||.|.+++|++..   .++.++|+|++++
T Consensus       492 dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~  564 (660)
T PLN02430        492 DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNE  564 (660)
T ss_pred             ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCH
Confidence            799999999999999999999999999996 79999999999999999999999999842   3467889998754

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.83  E-value=3.8e-20  Score=132.28  Aligned_cols=74  Identities=16%  Similarity=0.138  Sum_probs=62.8

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeE--EEEEeeCCCCCceEEEEEEEc
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEA--YAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      |+.+|||+|||+|++++||+++|+||.||+|| .+|++|+|.+||+++.+||.|.++  +|+..++   ...++++|++.
T Consensus       532 f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~  608 (700)
T PTZ00216        532 LDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTD  608 (700)
T ss_pred             ccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecC
Confidence            45689999999999999999999999999999 899999999999999999999973  3433322   34688888764

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.83  E-value=9.8e-20  Score=124.42  Aligned_cols=88  Identities=38%  Similarity=0.596  Sum_probs=78.8

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+++++++|.+++.||.+|++|++|.+|+|.+||+.+.++|.|.++++++.++...+..++++++..  ...+
T Consensus       359 ~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~  436 (483)
T PRK03640        359 DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVT  436 (483)
T ss_pred             cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCC
Confidence            57999999999999999999999999999999999999999999999999999999988877777787877754  3577


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++++++|++
T Consensus       437 ~~~l~~~~~~  446 (483)
T PRK03640        437 EEELRHFCEE  446 (483)
T ss_pred             HHHHHHHHHH
Confidence            7888888865

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.82  E-value=1.8e-19  Score=125.44  Aligned_cols=89  Identities=39%  Similarity=0.626  Sum_probs=78.5

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+++++++|.+++.||.+|+|+++|.+++|.+||++|.++|.|.+++|++.++...++.++++++..+ ...+
T Consensus       431 ~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~  509 (560)
T PRK08974        431 DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSLT  509 (560)
T ss_pred             cCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCCC
Confidence            589999999999999999999999999999999999999999999999999999999998877877777776543 3456


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .+++++++++
T Consensus       510 ~~~l~~~l~~  519 (560)
T PRK08974        510 EEELITHCRR  519 (560)
T ss_pred             HHHHHHHHHh
Confidence            6778777764

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.82  E-value=1e-19  Score=127.04  Aligned_cols=75  Identities=33%  Similarity=0.399  Sum_probs=67.0

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      ++||+|||+|+++ +|+++|.||.+|+||++|++|+|.|||++|.+||.+ .++++++++. .++.++++|+++++..
T Consensus       436 ~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~  510 (578)
T PRK05850        436 GPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGD  510 (578)
T ss_pred             CCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccC
Confidence            5799999999998 999999999999999999999999999999999985 4778888876 6788999999876543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.81  E-value=3.4e-19  Score=122.06  Aligned_cols=90  Identities=23%  Similarity=0.112  Sum_probs=75.0

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +.+||+|||++++ ++|++++.||.+|+||++|.+++|.+||+.+.++|.|.++++++.++...++.+++++++.++...
T Consensus       374 g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  452 (503)
T PRK04813        374 GQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE  452 (503)
T ss_pred             CceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc
Confidence            3469999999999 899999999999999999999999999999999999999999998776667888888887654211


Q ss_pred             C----HHHHHHHHhc
Q psy5015          83 N----ADDIRTFCKG   93 (94)
Q Consensus        83 ~----~~~l~~~l~~   93 (94)
                      .    ..+++++|++
T Consensus       453 ~~~~~~~~l~~~~~~  467 (503)
T PRK04813        453 REFELTKAIKKELKE  467 (503)
T ss_pred             ccchhHHHHHHHHHh
Confidence            1    1346666653

>PRK12467 peptide synthase; Provisional

Probab=99.81  E-value=2.6e-19  Score=143.39  Aligned_cols=90  Identities=20%  Similarity=0.151  Sum_probs=76.9

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +.+||+|||++++++||.++|+||.|++||++|++|+|.|||++|.++|+|.+|+|++.+ ...+..++++++.......
T Consensus      1952 ~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~ 2030 (3956)
T PRK12467       1952 GSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLV 2030 (3956)
T ss_pred             CccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccc
Confidence            457999999999999999999999999999999999999999999999999999999886 4456789999987654221


Q ss_pred             --------CHHHHHHHHhc
Q psy5015          83 --------NADDIRTFCKG   93 (94)
Q Consensus        83 --------~~~~l~~~l~~   93 (94)
                              ..++|+++|++
T Consensus      2031 ~~~~~~~~~~~~l~~~l~~ 2049 (3956)
T PRK12467       2031 DDDEAQVALRAILKNHLKA 2049 (3956)
T ss_pred             cccccccccHHHHHHHHHh
Confidence                    34567777764

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.81  E-value=4.7e-19  Score=119.79  Aligned_cols=84  Identities=21%  Similarity=0.289  Sum_probs=71.6

Q ss_pred             CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC-
Q psy5015           5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-   83 (94)
Q Consensus         5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-   83 (94)
                      .|++|||+++++++|+|+|.||.||+||++|++|+|.+||++|.+||.|.+++|..     .++.+.++|+++++...+ 
T Consensus       275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~  349 (386)
T TIGR02372       275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAE  349 (386)
T ss_pred             ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHH
Confidence            47999999999999999999999999999999999999999999999999998852     356788999887654333 


Q ss_pred             -HHHHHHHHhc
Q psy5015          84 -ADDIRTFCKG   93 (94)
Q Consensus        84 -~~~l~~~l~~   93 (94)
                       .++|++++++
T Consensus       350 ~~~~l~~~~~~  360 (386)
T TIGR02372       350 LEIELRATAAR  360 (386)
T ss_pred             HHHHHHHHHHH
Confidence             4577777764

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK05691 peptide synthase; Validated

Probab=99.81  E-value=3.8e-19  Score=143.05  Aligned_cols=90  Identities=17%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +.+||+|||++++++||.++|+||.|++||++|++|+|.|||++|.+||+|.+++|+..... .+..++++++..++...
T Consensus      1503 ~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~ 1581 (4334)
T PRK05691       1503 GARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEA 1581 (4334)
T ss_pred             CceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCC
Confidence            34699999999999999999999999999999999999999999999999999999866544 45788999988776666


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++|+++|++
T Consensus      1582 ~~~~l~~~l~~ 1592 (4334)
T PRK05691       1582 EAERLKAALAA 1592 (4334)
T ss_pred             CHHHHHHHHHH
Confidence            77889888875

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.81  E-value=6.4e-19  Score=121.34  Aligned_cols=90  Identities=29%  Similarity=0.333  Sum_probs=78.7

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC--
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK--   81 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--   81 (94)
                      ++||+|||+++++++|.+++.||.+|+||++|.+++|.+||+.|.++|+|.++++++.++......+.+++++.++..  
T Consensus       383 ~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  462 (508)
T TIGR02262       383 GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDID  462 (508)
T ss_pred             cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccc
Confidence            589999999999999999999999999999999999999999999999999999999887777778888888766542  


Q ss_pred             -CCHHHHHHHHhc
Q psy5015          82 -LNADDIRTFCKG   93 (94)
Q Consensus        82 -~~~~~l~~~l~~   93 (94)
                       ...+++++++++
T Consensus       463 ~~~~~~i~~~~~~  475 (508)
T TIGR02262       463 TALETELKEHVKD  475 (508)
T ss_pred             cccHHHHHHHHHH
Confidence             235677777664

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK05691 peptide synthase; Validated

Probab=99.80  E-value=6.7e-19  Score=141.68  Aligned_cols=90  Identities=24%  Similarity=0.236  Sum_probs=76.1

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC--
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA--   80 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--   80 (94)
                      +++||+|||+|++++||+++|+||.|++||++|++|+|.|||++|.+||+|.+|+|++... ..++.++++++.....  
T Consensus      2566 ~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~-~~~~~lva~vv~~~~~~~ 2644 (4334)
T PRK05691       2566 GGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDT-PSGKQLAGYLVSAVAGQD 2644 (4334)
T ss_pred             CCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeC-CCCcEEEEEEEecccccc
Confidence            4579999999999999999999999999999999999999999999999999999998854 3567888888864321  


Q ss_pred             ----CCCHHHHHHHHhc
Q psy5015          81 ----KLNADDIRTFCKG   93 (94)
Q Consensus        81 ----~~~~~~l~~~l~~   93 (94)
                          ....++|+++|++
T Consensus      2645 ~~~~~~~~~~l~~~l~~ 2661 (4334)
T PRK05691       2645 DEAQAALREALKAHLKQ 2661 (4334)
T ss_pred             cccccccHHHHHHHHHh
Confidence                2234678888765

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.79  E-value=1.3e-19  Score=127.78  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=63.2

Q ss_pred             CCCCeEEcCceEEE----ecCCeEEEEeecCCeEE-eCcEEeC--hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEE
Q psy5015           2 DGYACGLKQDQFVL----REDGYGQVVGRIKDMII-RGGENIY--PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI   74 (94)
Q Consensus         2 ~~~~~~~TGD~~~~----~~~G~~~~~GR~~d~i~-~~G~~v~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v   74 (94)
                      +++|||+|||+|++    +++|+++|.||.+|+|| .+|++|+  |.|+|.++.+||.|.+++|++.+++    .+.++|
T Consensus       437 ~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V  512 (614)
T PRK08180        437 DEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLV  512 (614)
T ss_pred             ccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEE
Confidence            46899999999999    46899999999999888 5798766  7888999999999999999998765    467888


Q ss_pred             EEcCC
Q psy5015          75 KLKEN   79 (94)
Q Consensus        75 ~~~~~   79 (94)
                      +++++
T Consensus       513 ~~~~~  517 (614)
T PRK08180        513 FPNLD  517 (614)
T ss_pred             EcCHH
Confidence            87654

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.79  E-value=9e-19  Score=123.49  Aligned_cols=74  Identities=26%  Similarity=0.249  Sum_probs=66.4

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE   78 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   78 (94)
                      |+.||||+|||+|.++++|+|++.||.+++|| .+|++|.|+.||+.+.++|.|.+.+|++...    ..+.|+|++..
T Consensus       445 f~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k----~~~~AlIvp~~  519 (613)
T COG1022         445 FTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDK----KFLVALIVPDF  519 (613)
T ss_pred             ccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCC----cceEEEEeCCH
Confidence            67899999999999999999999999999999 6999999999999999999999999998322    25788888643

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.77  E-value=5.3e-18  Score=117.72  Aligned_cols=75  Identities=29%  Similarity=0.336  Sum_probs=63.6

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEee--CCCCCceEEEEEEEc
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP--DERMGEEVGISIKLK   77 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~--~~~~~~~~~~~v~~~   77 (94)
                      .+|||+|||+++++++|.++++||.+|+||++|.+|+|.+||+.|.++|+|.+++|++.+  +...++.+++++...
T Consensus       412 ~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~  488 (545)
T PRK07768        412 ADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESN  488 (545)
T ss_pred             CCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEec
Confidence            468999999999999999999999999999999999999999999999999998777665  333444555555443

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.74  E-value=3.6e-18  Score=120.63  Aligned_cols=65  Identities=12%  Similarity=0.026  Sum_probs=56.8

Q ss_pred             CCCCCeEEcCceEEE-e---cCCeEEEEeecCCeEEe-CcEEeChHHHH--HHHhcCCCeeeEEEEEeeCCC
Q psy5015           1 MDGYACGLKQDQFVL-R---EDGYGQVVGRIKDMIIR-GGENIYPKEIE--EFIQTHPNVLEAYAYGVPDER   65 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~-~---~~G~~~~~GR~~d~i~~-~G~~v~~~~iE--~~l~~~~~v~~~~v~~~~~~~   65 (94)
                      |+++|||+|||+|++ +   ++|+++|.||.||+||+ +|++|+|.+||  .++.+||.|.+|+|++.+++.
T Consensus       448 f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~  519 (624)
T PRK12582        448 FDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF  519 (624)
T ss_pred             cCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc
Confidence            346899999999998 4   46999999999999995 79999999885  688899999999999987664

>KOG1256|consensus

Probab=99.71  E-value=2.4e-17  Score=116.54  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN   79 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~   79 (94)
                      ||++||++|||+|+++++|.|.|.||.++++| .+|++|.|+.||++..+.+.|.+.+|.+-..   ...++++|++++.
T Consensus       523 ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~---~~~LvaiVvpd~e  599 (691)
T KOG1256|consen  523 IDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSL---RSFLVAIVVPDPE  599 (691)
T ss_pred             hccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcc---hhcEEEEEecChh
Confidence            57899999999999999999999999999999 5899999999999999999999999986643   3468899998653

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.69  E-value=4.1e-16  Score=106.00  Aligned_cols=76  Identities=22%  Similarity=0.354  Sum_probs=62.8

Q ss_pred             CCeEEcCceEEEecC-C-----eEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           4 YACGLKQDQFVLRED-G-----YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~-G-----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      .+||+|||+++++++ |     .+++.||.+|+|+++|.+|+|.+||.+|.+||.|...+.+........+.+.+.|+..
T Consensus       288 ~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~  367 (422)
T TIGR02155       288 VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELK  367 (422)
T ss_pred             eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEe
Confidence            469999999999875 4     4689999999999999999999999999999999865655565555556777777776


Q ss_pred             CC
Q psy5015          78 EN   79 (94)
Q Consensus        78 ~~   79 (94)
                      ++
T Consensus       368 ~~  369 (422)
T TIGR02155       368 PE  369 (422)
T ss_pred             cC
Confidence            43

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.66  E-value=1.8e-16  Score=106.18  Aligned_cols=53  Identities=32%  Similarity=0.305  Sum_probs=51.3

Q ss_pred             eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEE
Q psy5015           6 CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA   58 (94)
Q Consensus         6 ~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v   58 (94)
                      ||+|||+++++++|++++.||.+|+++++|.+++|.+||+++..+|.|.+|+|
T Consensus       356 ~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       356 LYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             EEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            99999999999999999999999999999999999999999999999998764

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>KOG1179|consensus

Probab=99.62  E-value=4.7e-15  Score=102.97  Aligned_cols=91  Identities=21%  Similarity=0.232  Sum_probs=82.6

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCC-CCceEEEEEEEcCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIKLKENAK   81 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~   81 (94)
                      ||-||.|||+-.+|+.|++||.+|+.|.+.++|+||+..|||.+|.....++++.|+++.-+. .|..-+|.|++.|..+
T Consensus       486 GD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~  565 (649)
T KOG1179|consen  486 GDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTE  565 (649)
T ss_pred             CcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCccc
Confidence            678999999999999999999999999999999999999999999999999999999998765 4677788888888888


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.+.+-+++++
T Consensus       566 ~d~~~l~~~l~~  577 (649)
T KOG1179|consen  566 KDLEKLYQHLRE  577 (649)
T ss_pred             chHHHHHHHHHh
Confidence            888888777764

>KOG1180|consensus

Probab=99.57  E-value=4.6e-15  Score=102.95  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=65.0

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE   78 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~   78 (94)
                      .+||+|||+|.+.+||+|.|++|.+|++| .+|+.|+++-+|.++...|.|...+|++...   ...++++|++++
T Consensus       514 ~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~---~s~~VaiVVPn~  586 (678)
T KOG1180|consen  514 QRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSN---KSKPVAIVVPNQ  586 (678)
T ss_pred             cEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccc---cceeEEEEcCCc
Confidence            34999999999999999999999999999 6999999999999999999999999986644   346899999865

>KOG1178|consensus

Probab=99.40  E-value=1.3e-12  Score=96.44  Aligned_cols=90  Identities=21%  Similarity=0.235  Sum_probs=79.7

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC-C
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-L   82 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~   82 (94)
                      +..|+|||.++..++|.+.+.||.|++||.+|.|+.+.+|++++..||.|.++.+....+..-++.+.++++.....+ .
T Consensus       453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~  532 (1032)
T KOG1178|consen  453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV  532 (1032)
T ss_pred             hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch
Confidence            468999999999999999999999999999999999999999999999999999999998888899999999876543 3


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      ....|++++..
T Consensus       533 ~~~~i~~~l~~  543 (1032)
T KOG1178|consen  533 LIRDIRNYLKK  543 (1032)
T ss_pred             hHHHHHHhhcc
Confidence            34667777764

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.15  E-value=3.7e-11  Score=80.93  Aligned_cols=31  Identities=35%  Similarity=0.309  Sum_probs=29.4

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRG   34 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~   34 (94)
                      +|||+|||+|+++++|++++.||.||+||++
T Consensus       387 ~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  387 DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            5799999999999999999999999999975

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.15  E-value=5.9e-10  Score=76.84  Aligned_cols=73  Identities=15%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             EEcCceEEEec-C----Ce----EEEEeecCCeEEeCcEEeChHHHHHHHhcC---CCeeeEEEEEeeCCCC-CceEEEE
Q psy5015           7 GLKQDQFVLRE-D----GY----GQVVGRIKDMIIRGGENIYPKEIEEFIQTH---PNVLEAYAYGVPDERM-GEEVGIS   73 (94)
Q Consensus         7 ~~TGD~~~~~~-~----G~----~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~~v~~~~v~~~~~~~~-~~~~~~~   73 (94)
                      |+|||++++.. +    |.    +...||.|||++++|.+|+|.+||++|.++   +.+...+-+....... ...+.+.
T Consensus       300 YrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  379 (445)
T TIGR03335       300 YDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVS  379 (445)
T ss_pred             eecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEE
Confidence            89999999732 2    32    445699999999999999999999999994   6665444333333322 3356666


Q ss_pred             EEEcCC
Q psy5015          74 IKLKEN   79 (94)
Q Consensus        74 v~~~~~   79 (94)
                      +...+.
T Consensus       380 ~e~~~~  385 (445)
T TIGR03335       380 LECEDK  385 (445)
T ss_pred             EEecCc
Confidence            666554

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PTZ00297 pantothenate kinase; Provisional

Probab=99.06  E-value=6.4e-10  Score=85.17  Aligned_cols=67  Identities=12%  Similarity=0.148  Sum_probs=56.9

Q ss_pred             EEcCce-EEEecCCeEEEEeecCCeEE-eCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           7 GLKQDQ-FVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         7 ~~TGD~-~~~~~~G~~~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      -.|++. +.|.+||+|.|+||++++|| .+|++|+|+.||+.+.++|.|.+++|++...+    .++|+|+++
T Consensus       837 e~T~e~~~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd  905 (1452)
T PTZ00297        837 RRTLPIAAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPN  905 (1452)
T ss_pred             HHHHHhhCcCccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeC
Confidence            346665 35668999999999999999 69999999999999999999999999987544    378888864

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.05  E-value=3.1e-09  Score=72.98  Aligned_cols=73  Identities=26%  Similarity=0.419  Sum_probs=59.2

Q ss_pred             EEcCceEEEecC----Ce-----EEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           7 GLKQDQFVLRED----GY-----GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         7 ~~TGD~~~~~~~----G~-----~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      |+|||++.+.++    |+     ..+.||.||++++.|.+|+|..||.+|.+.+.+..-+.+.....+..+.+.+.|++.
T Consensus       304 YrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~  383 (438)
T COG1541         304 YRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELE  383 (438)
T ss_pred             EEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEec
Confidence            999999999763    32     469999999999999999999999999999999844433343455667888888887


Q ss_pred             CC
Q psy5015          78 EN   79 (94)
Q Consensus        78 ~~   79 (94)
                      +.
T Consensus       384 ~~  385 (438)
T COG1541         384 NE  385 (438)
T ss_pred             Cc
Confidence            54

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.96  E-value=2.3e-09  Score=56.93  Aligned_cols=46  Identities=39%  Similarity=0.637  Sum_probs=41.6

Q ss_pred             HHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          42 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        42 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      |||++|.+||+|.+|+|++.+++..|+.+++++++      +.++|+++|++
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~   46 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRD   46 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHH
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhh
Confidence            79999999999999999999998889999999998      44888888875

...

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.91  E-value=1.9e-09  Score=76.58  Aligned_cols=47  Identities=23%  Similarity=0.145  Sum_probs=44.8

Q ss_pred             CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCC
Q psy5015           5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP   51 (94)
Q Consensus         5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~   51 (94)
                      ++|+|||++++..+|.+.+.||.|.++|++|++|.+.|||..+.++|
T Consensus       596 ~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         596 RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            38999999999999999999999999999999999999999998875

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.31  E-value=8.4e-06  Score=45.47  Aligned_cols=46  Identities=28%  Similarity=0.514  Sum_probs=37.6

Q ss_pred             cEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015          35 GENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus        35 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |.||+|.+||++|.++|++...+.+.+......+.+.+.|.+.++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~   46 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF   46 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc
Confidence            7899999999999999999966666666556678888999988764

>KOG3628|consensus

Probab=98.09  E-value=2e-05  Score=59.42  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=57.1

Q ss_pred             CCCeEEcCceEEEec------CC----eEEEEeecCCeEEeCcEEeChHHHHHHHhc-CCCeeeEEEEEeeCCCCCceEE
Q psy5015           3 GYACGLKQDQFVLRE------DG----YGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMGEEVG   71 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~------~G----~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~~   71 (94)
                      +.+|-||||+|++..      ++    .||++|-.+..+-++|.+-+|.+||+.+.. ||.|..|+|+-...     .++
T Consensus      1217 ~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvV 1291 (1363)
T KOG3628|consen 1217 GKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVV 1291 (1363)
T ss_pred             cccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEE
Confidence            568999999999842      22    489999999999999999999999988876 99999999985533     355


Q ss_pred             EEEEEcC
Q psy5015          72 ISIKLKE   78 (94)
Q Consensus        72 ~~v~~~~   78 (94)
                      .++++..
T Consensus      1292 vviE~~g 1298 (1363)
T KOG3628|consen 1292 VVIECHG 1298 (1363)
T ss_pred             EEEEecC
Confidence            5555543

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=97.67  E-value=0.00037  Score=48.45  Aligned_cols=66  Identities=20%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             EEcCceEEEecC----Ce----E-EEEeecCCeEEe---C--cEEeChHHHHHHHh-cCCCeeeEEEEEeeCCCCCceEE
Q psy5015           7 GLKQDQFVLRED----GY----G-QVVGRIKDMIIR---G--GENIYPKEIEEFIQ-THPNVLEAYAYGVPDERMGEEVG   71 (94)
Q Consensus         7 ~~TGD~~~~~~~----G~----~-~~~GR~~d~i~~---~--G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~~~~~   71 (94)
                      |+|||++.+.++    |.    + .+.||.+|++++   +  +.+++|..++.++. ..+.+.+..++..    ....+.
T Consensus       297 YrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~----~~~~l~  372 (430)
T TIGR02304       297 YRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT----GSAQLE  372 (430)
T ss_pred             eeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc----cCCeEE
Confidence            899999887543    32    2 388999999986   3  45669999998755 5788888776632    123455


Q ss_pred             EEEEE
Q psy5015          72 ISIKL   76 (94)
Q Consensus        72 ~~v~~   76 (94)
                      +.++.
T Consensus       373 v~~~~  377 (430)
T TIGR02304       373 LIADC  377 (430)
T ss_pred             EEEEe
Confidence            55554

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.54  E-value=0.00074  Score=48.07  Aligned_cols=73  Identities=12%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             EEcCceEEEec--CC--eEEEEeecCCeEEeCcEEeChHHHHHHHhcC---C--CeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           7 GLKQDQFVLRE--DG--YGQVVGRIKDMIIRGGENIYPKEIEEFIQTH---P--NVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         7 ~~TGD~~~~~~--~G--~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~--~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      |+.||++++..  ++  .+.|+||.+.++++.|++++-.++++++.+.   .  .+.+..+.+.........-..++.+.
T Consensus       371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~  450 (528)
T PF03321_consen  371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE  450 (528)
T ss_dssp             EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred             eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence            89999999853  34  6899999999999999999999999999874   2  34555555443222333555666665


Q ss_pred             CC
Q psy5015          78 EN   79 (94)
Q Consensus        78 ~~   79 (94)
                      ..
T Consensus       451 ~~  452 (528)
T PF03321_consen  451 GE  452 (528)
T ss_dssp             S-
T ss_pred             CC
Confidence            43

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=96.81  E-value=0.028  Score=40.86  Aligned_cols=43  Identities=5%  Similarity=-0.017  Sum_probs=38.2

Q ss_pred             EEcCceEEEecC----CeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015           7 GLKQDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   49 (94)
Q Consensus         7 ~~TGD~~~~~~~----G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~   49 (94)
                      |+.||++++..-    -.+.|+||.+.++++.|++++-.+++.++.+
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            899999998532    3588999999999999999999999998877

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=94.58  E-value=0.49  Score=34.75  Aligned_cols=44  Identities=7%  Similarity=-0.017  Sum_probs=37.9

Q ss_pred             EEcCceEEEec----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015           7 GLKQDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   50 (94)
Q Consensus         7 ~~TGD~~~~~~----~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~   50 (94)
                      |+.||+.++..    .-.+.|++|.+.+..+.|.+++-.++..++.+.
T Consensus       423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA  470 (612)
T ss_pred             EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence            89999998852    346899999999999999999999998887763

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=93.38  E-value=0.2  Score=36.70  Aligned_cols=44  Identities=7%  Similarity=0.008  Sum_probs=38.2

Q ss_pred             EEcCceEEEe----cCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015           7 GLKQDQFVLR----EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   50 (94)
Q Consensus         7 ~~TGD~~~~~----~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~   50 (94)
                      |+.||+.++.    ..-.+.|++|.+.+..+.|.+++-.++..++.+.
T Consensus       417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence            8999999884    2346899999999999999999999999888773

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=87.57  E-value=2.3  Score=21.07  Aligned_cols=46  Identities=11%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ...|++.|.+.|+|..+.+-..    .+   .+.|...+.. .+.++|.+.+++
T Consensus        13 ~~~v~~~l~~~~GV~~v~vd~~----~~---~v~v~~~~~~-~~~~~i~~~i~~   58 (62)
T PF00403_consen   13 AKKVEKALSKLPGVKSVKVDLE----TK---TVTVTYDPDK-TSIEKIIEAIEK   58 (62)
T ss_dssp             HHHHHHHHHTSTTEEEEEEETT----TT---EEEEEESTTT-SCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEEECC----CC---EEEEEEecCC-CCHHHHHHHHHH
Confidence            4678999999999977655311    11   2344444443 677888887764

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis

Probab=84.58  E-value=6.9  Score=23.82  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=19.5

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeC
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPD   63 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~   63 (94)
                      ...|++.+.+.|+|.+|.|+...+
T Consensus        77 a~~i~~~v~~~~~V~~A~vvv~~~  100 (177)
T PF09580_consen   77 ADRIANRVKKVPGVEDATVVVTDD  100 (177)
T ss_pred             HHHHHHHHhcCCCceEEEEEEECC
Confidence            456778888899999999997744

Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	94
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		6e-13
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		6e-13
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		6e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-13
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		6e-13
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		3e-12
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-10
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-09
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		6e-09
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-08
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-08
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-08
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		6e-08
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-07
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-07
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-07
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-06
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-06
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-06
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		4e-06
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		9e-06
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-05
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-05
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-05
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		4e-05
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		6e-05
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		1e-04
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-04
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		1e-04
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-04
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-04
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-04
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-04
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-04
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		4e-04
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		6e-04

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71  GISIKLKENAKLNADDIRTFCK 92
              +  +    L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71  GISIKLKENAKLNADDIRTFCK 92
              +  +    L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71  GISIKLKENAKLNADDIRTFCK 92
              +  +    L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71  GISIKLKENAKLNADDIRTFCK 92
              +  +    L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71  GISIKLKENAKLNADDIRTFCK 92
              +  +    L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V   +G  +++GR+ D II GGENI+P EIE  + T P V E    G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 71  GISIKLKENAKLNADDIRTFCK 92
              +  +    L+AD + TFC+
Sbjct: 445 TACVVPRLGETLSADALDTFCR 466

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           ++GY  +  R+KDMII GGEN+YP EIE  I   P V E    G+PDE+ G E+  +I +
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG-EIAAAIVV 460
Query: 77  KENAKLNADDIRTFC 91
            +  +++   I  +C
Sbjct: 461 ADQNEVSEQQIVEYC 475

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           E GY  ++GR KD++I GG N+YPKEIE  I   P V+E+   GVP    GE V
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGV 441

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 77
           DG  +VVGRIKD I RGGE I  +EIE+ I  HP V+ A    + DE+ GE+   +  + 
Sbjct: 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK-SCAFIVS 487
Query: 78  ENAKLNADDIR 88
            N +L A  +R
Sbjct: 488 RNPELKAVVLR 498

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           E GY  ++GR  D++I GG N+YP EIE  I   P V+E+   GVP    GE V
Sbjct: 388 ERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           E GY  ++GR  D++I GG N+YP EIE  I   P V+E+   GVP    GE V
Sbjct: 388 ERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           E GY  ++GR  D++I GG N+YP EIE  I   P V+E+   GVP    GE V
Sbjct: 388 ERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 2   DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
           +G+ C    D   +  +GY  V GR KD I RGGE I  +EIE  +  HP V+ A    +
Sbjct: 410 NGFYC--SGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSM 467
Query: 62  PDERMGEEVGISIKLKENAKLNADDIRTFCK 92
            DE MGE+    + +KE   L A  +R F +
Sbjct: 468 EDELMGEKSCAYLVVKE--PLRAVQVRRFLR 496

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 18  DGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 75
           DGY    GR   K++I  GGEN+YP E+E  ++ HP + +A   GVPD +  E +     
Sbjct: 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCV 447
Query: 76  LKENAKLNADDIRTF 90
            K    + AD +  F
Sbjct: 448 CKPGESIAADALAEF 462

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE   + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI 476
Query: 75  KLKENAKLNADDIRTFCK 92
             ++ A   A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 15  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
           L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A     PD+ +GE   + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFI 476
Query: 75  KLKENAKLNADDIRTFCK 92
             ++ A   A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
           +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+
Sbjct: 388 EGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D   + EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD   G+ +
Sbjct: 458 DMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517
Query: 71  GISIKLKEN 79
             +I L ++
Sbjct: 518 KATIVLTKD 526

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           +DGY  +V R+K +I   G  + P E+E  +  HP + +A   G+PD   GE     + L
Sbjct: 463 KDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVL 522
Query: 77  KENAKLNADDIRTFCKGK 94
           +E   +   ++  +  G+
Sbjct: 523 EEGKTMTEQEVMDYVAGQ 540

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 11  DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 69
           D  V   DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G PD  +GE 
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447
Query: 70  V 70
           +
Sbjct: 448 I 448

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 77  KENAKLNADDI 87
           +    +   +I
Sbjct: 488 EHGKTMTEKEI 498

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 77  KENAKLNADDI 87
           +    +   +I
Sbjct: 493 EHGKTMTEKEI 503

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 77  KENAKLNADDI 87
           +    +   +I
Sbjct: 488 EHGKTMTEKEI 498

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 77  KENAKLNADDI 87
           +    +   +I
Sbjct: 493 EHGKTMTEKEI 503

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 18  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERM 66
           DGY  V GRIKD+II  G NI+P++IE   +  P +   +A A+    E++
Sbjct: 450 DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI 500

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 68
           D  V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E
Sbjct: 418 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 475

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 77  KENAKLNADDIRTFCKGK 94
           +    +   ++  +   +
Sbjct: 490 ESGKNMTEKEVMDYVASQ 507

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 77  KENAKLNADDIRTFCKGK 94
           +    +   ++  +   +
Sbjct: 490 ESGKNMTEKEVMDYVASQ 507

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 77  KENAKLNADDIRTFCKGK 94
           +    +   ++  +   +
Sbjct: 490 ESGKNMTEKEVMDYVASQ 507

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 23  VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 82
           +V R+K++I   G  + P E+E  +  HP + +A   G+ DE  GE     +   E ++ 
Sbjct: 429 IVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQA 488
Query: 83  NADDIRTF 90
             D+I+ +
Sbjct: 489 TEDEIKQY 496

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 23  VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIKLKENAK 81
           +V R+K++I   G  + P E+E  +  HP++ +     + +E  GE  V   +K K+ ++
Sbjct: 476 IVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD-SE 534
Query: 82  LNADDIRTF 90
           L+ DD++ F
Sbjct: 535 LSEDDVKQF 543

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-37
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-36
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	6e-36
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	8e-36
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-35
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-31
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	8e-31
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-30
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-30
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-26
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-25
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-24
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-24
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	4e-24
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	4e-20
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-19
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	6e-13
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-12
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	4e-10
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-09
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	7e-06
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	8e-06
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	9e-06
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	1e-05
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-05
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	4e-05

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  129 bits (327), Expect = 3e-37
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
            L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE   + 
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           I  ++ A   A +++ F + +
Sbjct: 476 IIPRDEA-PKAAELKAFLRER 495

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  127 bits (322), Expect = 1e-36
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
           V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447

Query: 74  IKLKENAKLNADDIRTFCKG 93
           +  +    L+AD + TFC+ 
Sbjct: 448 VVPRLGETLSADALDTFCRS 467

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  126 bits (318), Expect = 6e-36
 Identities = 29/81 (35%), Positives = 38/81 (46%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
               DG  +VVGRIKD I RGGE I  +EIE+ I  HP V+ A    + DE+ GE+    
Sbjct: 425 QRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           I  +          R   +  
Sbjct: 485 IVSRNPELKAVVLRRHLMELG 505

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  125 bits (316), Expect = 8e-36
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E GY  ++GR KD++I GG N+YPKEIE  I   P V+E+   GVP    GE V   +  
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVR 447

Query: 77  KENAKLNADDIRTFCKGK 94
            + A ++   +     G+
Sbjct: 448 DKGATIDEAQVLHGLDGQ 465

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  125 bits (317), Expect = 1e-35
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
            +  +GY  V GR KD I RGGE I  +EIE  +  HP V+ A    + DE MGE+    
Sbjct: 420 SIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           + +KE  +  A  +R F + +
Sbjct: 480 LVVKEPLR--AVQVRRFLREQ 498

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  114 bits (287), Expect = 1e-31
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
            +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+   +    
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446

Query: 77  KENAKLNADDIRTFCKGK 94
           + +  ++   +  +    
Sbjct: 447 ESD--ISKAQLIAYLSKH 462

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  111 bits (281), Expect = 8e-31
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 17  EDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 74
            DGY    GR   K++I  GGEN+YP E+E  ++ HP + +A   GVPD +  E +    
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVC 446

Query: 75  KLKENAKLNADDIRTFCKGK 94
             K    + AD +  F    
Sbjct: 447 VCKPGESIAADALAEFVASL 466

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  110 bits (277), Expect = 2e-30
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 11  DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 69
           D  V   DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G PD  +GE 
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447

Query: 70  VGISIKLKE-NAKLNADDIRTFCKGK 94
           +   I   +  A      +      +
Sbjct: 448 IVAWIVPADPAAPPALGTLADHVAAR 473

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  109 bits (276), Expect = 4e-30
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           ++GY  +  R+KDMII GGEN+YP EIE  I   P V E    G+PDE+ GE     +  
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461

Query: 77  KENAKLNADDIRTFCKGK 94
            +  +++   I  +C  +
Sbjct: 462 DQ-NEVSEQQIVEYCGTR 478

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  100 bits (252), Expect = 1e-26
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+G+     R+K++I   G  I P E+E  +  H  V++    G PDE  GE     I L
Sbjct: 428 EEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL 487

Query: 77  KEN--AKLNADDIRTFCKGK 94
           K     K++ +DI  + + +
Sbjct: 488 KPEYRGKVDEEDIIEWVRER 507

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 97.3 bits (243), Expect = 2e-25
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D++    +G     GR  DM+   G+ + P E+E  +  H  VLEA   GV       + 
Sbjct: 412 DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKT 470

Query: 71  GISIKLKENAK---LNADDIRTFCKGK 94
              + LK       + A++++ F K +
Sbjct: 471 RAFVVLKREFAPSEILAEELKAFVKDR 497

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 94.9 bits (237), Expect = 1e-24
 Identities = 20/78 (25%), Positives = 38/78 (48%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           +D    +V R+K++I   G  + P E+E  +  HP + +A   G+ DE  GE     +  
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482

Query: 77  KENAKLNADDIRTFCKGK 94
            E ++   D+I+ +   +
Sbjct: 483 SEKSQATEDEIKQYISKQ 500

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 94.6 bits (236), Expect = 1e-24
 Identities = 20/78 (25%), Positives = 38/78 (48%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489

Query: 77  KENAKLNADDIRTFCKGK 94
           +    +   ++  +   +
Sbjct: 490 ESGKNMTEKEVMDYVASQ 507

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 21/78 (26%), Positives = 38/78 (48%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487

Query: 77  KENAKLNADDIRTFCKGK 94
           +    +   +I  +   +
Sbjct: 488 EHGKTMTEKEIVDYVASQ 505

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 82.0 bits (203), Expect = 4e-20
 Identities = 18/78 (23%), Positives = 40/78 (51%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           +D    +V R+K++I   G  + P E+E  +  HP++ +     + +E  GE     +  
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529

Query: 77  KENAKLNADDIRTFCKGK 94
            ++++L+ DD++ F   +
Sbjct: 530 SKDSELSEDDVKQFVSKQ 547

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 79.9 bits (198), Expect = 2e-19
 Identities = 21/81 (25%), Positives = 34/81 (41%)

Query: 14  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 73
           V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E     
Sbjct: 421 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480

Query: 74  IKLKENAKLNADDIRTFCKGK 94
           +  +       +      K  
Sbjct: 481 VVPRGEKPTPEELNEHLLKAG 501

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 59.2 bits (144), Expect = 4e-12
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

Query: 71  GISIKLKENAKLN-----ADDIRTFCK 92
              + L      +       +++   K
Sbjct: 499 KAFVVLASQFLSHDPEQLTKELQQHVK 525

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 23  VVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 70
           V GRIKD+II  G+N YP++IE  +  +  + +     A+ + +E   +  
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 76
           EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD   G+ +  +I L
Sbjct: 464 EDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVL 523

Query: 77  KENAKLN---ADDIRTFCK 92
            ++   +    ++++   K
Sbjct: 524 TKDYTPSDSLKNELQDHVK 542

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 41.4 bits (98), Expect = 7e-06
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 41.1 bits (97), Expect = 9e-06
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 21  GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 80
            ++ GR  DM+I  G N++P +IEE +     +   Y   +  E   + + ++++     
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385

Query: 81  KLNADDIRTFCK 92
             +   I+   +
Sbjct: 386 APDTAAIQVAKQ 397

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 17  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           +DGY  ++GR+ D++   G  +   EIE  I   P V E    G  D+  G+ V
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 568

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 23  VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 57
           + GR  DM I  G NI+P ++E+ +   P +   Y
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 23  VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 57
           + GR  DM+I  G N++P +IEE +   P +   +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.95
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.95
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.94
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.94
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.94
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.94
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.93
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.93
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.93
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.93
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.93
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.93
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.92
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.92
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.92
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.92
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.92
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.92
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.91
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.91
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.91
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.91
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.91
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.91
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.9
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.89
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.89
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.88
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.88
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.87
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.87
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.86
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.86
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.85
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.71
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.67
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.36
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.3
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.17
2cvi_A	83	75AA long hypothetical regulatory protein ASNC; st	83.54
2djw_A	92	Probable transcriptional regulator, ASNC family; s	83.45

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.95  E-value=2.9e-27  Score=162.85  Aligned_cols=94  Identities=23%  Similarity=0.341  Sum_probs=88.5

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |+++|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|+..++.
T Consensus       407 ~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~  486 (536)
T 3ni2_A          407 IDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS  486 (536)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             ccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999988899999999998887


Q ss_pred             CCCHHHHHHHHhcC
Q psy5015          81 KLNADDIRTFCKGK   94 (94)
Q Consensus        81 ~~~~~~l~~~l~~~   94 (94)
                      ..+.++|+++|+++
T Consensus       487 ~~~~~~l~~~l~~~  500 (536)
T 3ni2_A          487 QATEDEIKQYISKQ  500 (536)
T ss_dssp             CCCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHh
Confidence            88899999999864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.95  E-value=4.6e-27  Score=160.96  Aligned_cols=94  Identities=32%  Similarity=0.502  Sum_probs=88.3

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |..+|||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|++.++.
T Consensus       372 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~  451 (503)
T 4fuq_A          372 FRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA  451 (503)
T ss_dssp             BCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             hCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC
Confidence            34689999999999999999999999999999999999999999999999999999999999998899999999998888


Q ss_pred             CCCHHHHHHHHhcC
Q psy5015          81 KLNADDIRTFCKGK   94 (94)
Q Consensus        81 ~~~~~~l~~~l~~~   94 (94)
                      ..+.++++++|+++
T Consensus       452 ~~~~~~l~~~l~~~  465 (503)
T 4fuq_A          452 TIDEAQVLHGLDGQ  465 (503)
T ss_dssp             CCCHHHHHHHHBTT
T ss_pred             CCCHHHHHHHHHhh
Confidence            88999999998764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.94  E-value=1.3e-26  Score=158.57  Aligned_cols=90  Identities=37%  Similarity=0.593  Sum_probs=85.7

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|+++++...+
T Consensus       378 ~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~  457 (504)
T 1t5h_X          378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS  457 (504)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC
T ss_pred             CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC
Confidence            68999999999999999999999999999999999999999999999999999999999988899999999998877788


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|+++|++
T Consensus       458 ~~~l~~~~~~  467 (504)
T 1t5h_X          458 ADALDTFCRS  467 (504)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            8999999975

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.94  E-value=9.3e-27  Score=160.85  Aligned_cols=93  Identities=24%  Similarity=0.353  Sum_probs=87.2

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +.+|||+|||+|+++++|+++|.||.||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+++++..
T Consensus       415 ~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~  494 (548)
T 2d1s_A          415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN  494 (548)
T ss_dssp             CTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred             cCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999888899999999988777


Q ss_pred             CCHHHHHHHHhcC
Q psy5015          82 LNADDIRTFCKGK   94 (94)
Q Consensus        82 ~~~~~l~~~l~~~   94 (94)
                      .+.++|+++|+++
T Consensus       495 ~~~~~l~~~~~~~  507 (548)
T 2d1s_A          495 MTEKEVMDYVASQ  507 (548)
T ss_dssp             CCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHh
Confidence            8889999998764

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.94  E-value=2e-26  Score=158.81  Aligned_cols=93  Identities=30%  Similarity=0.467  Sum_probs=85.1

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |..+|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|++++ .
T Consensus       403 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~  481 (539)
T 1mdb_A          403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-E  481 (539)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-S
T ss_pred             ccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-C
Confidence            346899999999999999999999999999999999999999999999999999999999999888889999999874 4


Q ss_pred             CCCHHHHHHHHhcC
Q psy5015          81 KLNADDIRTFCKGK   94 (94)
Q Consensus        81 ~~~~~~l~~~l~~~   94 (94)
                      ..+.++|+++|+++
T Consensus       482 ~~~~~~l~~~l~~~  495 (539)
T 1mdb_A          482 APKAAELKAFLRER  495 (539)
T ss_dssp             CCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhC
Confidence            57788999998763

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.94  E-value=6.3e-26  Score=155.50  Aligned_cols=93  Identities=30%  Similarity=0.360  Sum_probs=85.0

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeec-CCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcC-
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE-   78 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-   78 (94)
                      |..+|||+|||+|+++++|+++|.||. |++||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|++.+ 
T Consensus       378 f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~  457 (505)
T 3nyq_A          378 FTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP  457 (505)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST
T ss_pred             hcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC
Confidence            346899999999999999999999998 599999999999999999999999999999999999988999999999876 


Q ss_pred             CCCCCHHHHHHHHhc
Q psy5015          79 NAKLNADDIRTFCKG   93 (94)
Q Consensus        79 ~~~~~~~~l~~~l~~   93 (94)
                      ....+.++|+++|++
T Consensus       458 ~~~~~~~~l~~~l~~  472 (505)
T 3nyq_A          458 AAPPALGTLADHVAA  472 (505)
T ss_dssp             TSCCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHh
Confidence            445678899998875

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.93  E-value=2.8e-26  Score=158.34  Aligned_cols=92  Identities=27%  Similarity=0.399  Sum_probs=68.1

Q ss_pred             CCC--eEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC-
Q psy5015           3 GYA--CGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN-   79 (94)
Q Consensus         3 ~~~--~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-   79 (94)
                      .+|  ||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++ 
T Consensus       412 ~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~  491 (549)
T 3g7s_A          412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY  491 (549)
T ss_dssp             TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT
T ss_pred             CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc
Confidence            445  99999999999999999999999999999999999999999999999999999999998888999999999876 


Q ss_pred             -CCCCHHHHHHHHhcC
Q psy5015          80 -AKLNADDIRTFCKGK   94 (94)
Q Consensus        80 -~~~~~~~l~~~l~~~   94 (94)
                       ...+.++|+++|+++
T Consensus       492 ~~~~~~~~l~~~l~~~  507 (549)
T 3g7s_A          492 RGKVDEEDIIEWVRER  507 (549)
T ss_dssp             TTSCCHHHHHHHHHTT
T ss_pred             cCcCCHHHHHHHHHHh
Confidence             567889999999864

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.93  E-value=9.2e-26  Score=158.66  Aligned_cols=91  Identities=23%  Similarity=0.371  Sum_probs=83.1

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .+|||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++...
T Consensus       492 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~  571 (652)
T 1pg4_A          492 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP  571 (652)
T ss_dssp             STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred             CCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC
Confidence            36899999999999999999999999999999999999999999999999999999999998888999999999877555


Q ss_pred             C---HHHHHHHHhc
Q psy5015          83 N---ADDIRTFCKG   93 (94)
Q Consensus        83 ~---~~~l~~~l~~   93 (94)
                      +   .++|+++|++
T Consensus       572 ~~~~~~~l~~~l~~  585 (652)
T 1pg4_A          572 SPELYAEVRNWVRK  585 (652)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            4   4678888764

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.93  E-value=1.2e-25  Score=156.32  Aligned_cols=90  Identities=30%  Similarity=0.424  Sum_probs=82.7

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+|++++||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.+.++|++.++...+
T Consensus       451 ~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~  530 (580)
T 3etc_A          451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPS  530 (580)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred             CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999998999999999998875544


Q ss_pred             H---HHHHHHHhc
Q psy5015          84 A---DDIRTFCKG   93 (94)
Q Consensus        84 ~---~~l~~~l~~   93 (94)
                      .   ++|+++|++
T Consensus       531 ~~~~~~l~~~l~~  543 (580)
T 3etc_A          531 DSLKNELQDHVKN  543 (580)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            3   578887764

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.93  E-value=9.1e-26  Score=154.96  Aligned_cols=89  Identities=34%  Similarity=0.567  Sum_probs=82.5

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+++++ +.++...+
T Consensus       389 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~  467 (517)
T 3r44_A          389 NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVS  467 (517)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCC
T ss_pred             CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999988888888888 66666788


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|+++|++
T Consensus       468 ~~~l~~~l~~  477 (517)
T 3r44_A          468 EQQIVEYCGT  477 (517)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8999999875

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.93  E-value=2.1e-25  Score=154.63  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=82.2

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++++...  ..
T Consensus       405 g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~  482 (563)
T 1amu_A          405 GEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HI  482 (563)
T ss_dssp             TSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CC
T ss_pred             CCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CC
Confidence            4679999999999999999999999999999999999999999999999999999999998888889999998764  46


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++|+++|++
T Consensus       483 ~~~~l~~~l~~  493 (563)
T 1amu_A          483 PLEQLRQFSSE  493 (563)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHh
Confidence            78899998875

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.93  E-value=4.8e-27  Score=162.16  Aligned_cols=93  Identities=25%  Similarity=0.378  Sum_probs=22.3

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |+.+|||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|++.++.
T Consensus       412 ~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~  491 (550)
T 3rix_A          412 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK  491 (550)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEC--------------------------------------------------------
T ss_pred             cCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999988899999999988877


Q ss_pred             CCCHHHHHHHHhc
Q psy5015          81 KLNADDIRTFCKG   93 (94)
Q Consensus        81 ~~~~~~l~~~l~~   93 (94)
                      ..+.++|+++|++
T Consensus       492 ~~~~~~l~~~~~~  504 (550)
T 3rix_A          492 TMTEKEIVDYVAS  504 (550)
T ss_dssp             -------------
T ss_pred             CCCHHHHHHHHHH
Confidence            7777888888765

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.92  E-value=4.7e-26  Score=157.07  Aligned_cols=91  Identities=24%  Similarity=0.319  Sum_probs=60.2

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      ..+|||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|++. +..
T Consensus       409 ~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~  487 (541)
T 1v25_A          409 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEK  487 (541)
T ss_dssp             CTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------
T ss_pred             cCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCC
Confidence            3479999999999999999999999999999999999999999999999999999999999988889999999876 344


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++++++|++
T Consensus       488 ~~~~~l~~~~~~  499 (541)
T 1v25_A          488 PTPEELNEHLLK  499 (541)
T ss_dssp             ------------
T ss_pred             CCHHHHHHHHHh
Confidence            566778887765

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.92  E-value=1.1e-24  Score=152.24  Aligned_cols=91  Identities=36%  Similarity=0.502  Sum_probs=84.0

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |++++||+|||+|++++||.++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+++++++.+  
T Consensus       407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--  484 (617)
T 3rg2_A          407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--  484 (617)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--
T ss_pred             cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--
Confidence            456899999999999999999999999999999999999999999999999999999999998888889999999876  


Q ss_pred             CCCHHHHHHHHhc
Q psy5015          81 KLNADDIRTFCKG   93 (94)
Q Consensus        81 ~~~~~~l~~~l~~   93 (94)
                      ..+.+++++++++
T Consensus       485 ~~~~~~l~~~l~~  497 (617)
T 3rg2_A          485 PLRAVQVRRFLRE  497 (617)
T ss_dssp             CCCHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHh
Confidence            4678889998875

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.92  E-value=7.8e-25  Score=149.46  Aligned_cols=88  Identities=26%  Similarity=0.442  Sum_probs=81.8

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+|+++++|+++|.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++...  ..+
T Consensus       374 ~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~--~~~  451 (501)
T 3ipl_A          374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES--DIS  451 (501)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCC
T ss_pred             CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC--CCC
Confidence            689999999999999999999999999999999999999999999999999999999999888889999988643  467


Q ss_pred             HHHHHHHHhc
Q psy5015          84 ADDIRTFCKG   93 (94)
Q Consensus        84 ~~~l~~~l~~   93 (94)
                      .++|+++|++
T Consensus       452 ~~~l~~~l~~  461 (501)
T 3ipl_A          452 KAQLIAYLSK  461 (501)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8899998875

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.92  E-value=2.5e-26  Score=159.18  Aligned_cols=92  Identities=22%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCC-CC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN-AK   81 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~   81 (94)
                      ++|||+|||+|++++||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|++.+. ..
T Consensus       444 ~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~  523 (570)
T 4gr5_A          444 GERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP  523 (570)
T ss_dssp             CCEEEEEEEEEEECTTSCEEEEEC--------------------------------------------------------
T ss_pred             CCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC
Confidence            45899999999999999999999999999999999999999999999999999999999888888889999987653 34


Q ss_pred             CCHHHHHHHHhcC
Q psy5015          82 LNADDIRTFCKGK   94 (94)
Q Consensus        82 ~~~~~l~~~l~~~   94 (94)
                      .+.++|+++|+++
T Consensus       524 ~~~~~l~~~l~~~  536 (570)
T 4gr5_A          524 PDAAELRRHVAEA  536 (570)
T ss_dssp             -------------
T ss_pred             cCHHHHHHHHHhh
Confidence            5677888888753

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.92  E-value=1.4e-24  Score=148.65  Aligned_cols=91  Identities=18%  Similarity=0.070  Sum_probs=80.5

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +++|||+|||+|++ ++|+++|.||.||+||++|++|+|.+||++|.+||.|.+|+|++.++...++.++++|++.++..
T Consensus       374 ~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~  452 (512)
T 3fce_A          374 DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF  452 (512)
T ss_dssp             TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC
T ss_pred             CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc
Confidence            45789999999999 79999999999999999999999999999999999999999999998888889999999877654


Q ss_pred             CCH----HHHHHHHhc
Q psy5015          82 LNA----DDIRTFCKG   93 (94)
Q Consensus        82 ~~~----~~l~~~l~~   93 (94)
                      .+.    ++|+++|++
T Consensus       453 ~~~~~~~~~l~~~l~~  468 (512)
T 3fce_A          453 EKEFKLTSAIKKELNE  468 (512)
T ss_dssp             SSHHHHHHHHHHHHHT
T ss_pred             cchhhhHHHHHHHHHh
Confidence            443    467777765

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.92  E-value=5.4e-26  Score=156.83  Aligned_cols=92  Identities=36%  Similarity=0.441  Sum_probs=26.3

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |+++|||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|++.+ .
T Consensus       412 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~  490 (544)
T 3o83_A          412 FDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-P  490 (544)
T ss_dssp             BCTTCCEEEEEEEEECTTSCEEEEEEEC----------------------------------------------------
T ss_pred             CCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-C
Confidence            357899999999999999999999999999999999999999999999999999999999999888999999998765 3


Q ss_pred             CCCHHHHHHHHhc
Q psy5015          81 KLNADDIRTFCKG   93 (94)
Q Consensus        81 ~~~~~~l~~~l~~   93 (94)
                      ..+.++++++|++
T Consensus       491 ~~~~~~l~~~~~~  503 (544)
T 3o83_A          491 ELKAVVLRRHLME  503 (544)
T ss_dssp             -------------
T ss_pred             CCCHHHHHHHHHh
Confidence            4556677777654

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.91  E-value=6.7e-25  Score=154.65  Aligned_cols=90  Identities=23%  Similarity=0.328  Sum_probs=78.5

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC--
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK--   81 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--   81 (94)
                      +|||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++..  
T Consensus       502 ~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~  581 (663)
T 1ry2_A          502 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS  581 (663)
T ss_dssp             TTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred             CCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc
Confidence            689999999999999999999999999999999999999999999999999999999998888899999999987643  


Q ss_pred             -C-C------HHHHHHHHhc
Q psy5015          82 -L-N------ADDIRTFCKG   93 (94)
Q Consensus        82 -~-~------~~~l~~~l~~   93 (94)
                       . +      .++|+++|++
T Consensus       582 ~~~~~~~~~l~~~l~~~l~~  601 (663)
T 1ry2_A          582 TATDDELQDIKKHLVFTVRK  601 (663)
T ss_dssp             ------CCSHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHH
Confidence             2 1      4677777764

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.91  E-value=1.4e-24  Score=150.76  Aligned_cols=90  Identities=30%  Similarity=0.391  Sum_probs=79.9

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC-C
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-L   82 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~   82 (94)
                      ++||+|||+|+++++|+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|++.++.. .
T Consensus       432 ~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~  511 (570)
T 3c5e_A          432 GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSH  511 (570)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTS
T ss_pred             CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCc
Confidence            589999999999999999999999999999999999999999999999999999999999888889999999876531 1


Q ss_pred             C----HHHHHHHHhc
Q psy5015          83 N----ADDIRTFCKG   93 (94)
Q Consensus        83 ~----~~~l~~~l~~   93 (94)
                      +    .++|+++|++
T Consensus       512 ~~~~~~~~l~~~l~~  526 (570)
T 3c5e_A          512 DPEQLTKELQQHVKS  526 (570)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHh
Confidence            2    4567777754

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.91  E-value=1.2e-25  Score=163.37  Aligned_cols=94  Identities=21%  Similarity=0.343  Sum_probs=27.4

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |+++|||+|||+|+++++|+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..++.++++|++.++.
T Consensus       454 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~  533 (979)
T 3tsy_A          454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS  533 (979)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------------------------
T ss_pred             ccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999888889999999988776


Q ss_pred             CCCHHHHHHHHhcC
Q psy5015          81 KLNADDIRTFCKGK   94 (94)
Q Consensus        81 ~~~~~~l~~~l~~~   94 (94)
                      ..+.++|+++|+++
T Consensus       534 ~~~~~~l~~~l~~~  547 (979)
T 3tsy_A          534 ELSEDDVKQFVSKQ  547 (979)
T ss_dssp             --------------
T ss_pred             CCCHHHHHHHHHHh
Confidence            77778888888753

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.91  E-value=1e-23  Score=144.41  Aligned_cols=88  Identities=18%  Similarity=0.042  Sum_probs=78.0

Q ss_pred             CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCH
Q psy5015           5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA   84 (94)
Q Consensus         5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~   84 (94)
                      +||+|||+|++ +||+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.+++++++.++...+.
T Consensus       376 ~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~  454 (511)
T 3e7w_A          376 WAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKE  454 (511)
T ss_dssp             EEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSH
T ss_pred             EEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccch
Confidence            38999999999 59999999999999999999999999999999999999999999998888899999999987654443


Q ss_pred             ----HHHHHHHhc
Q psy5015          85 ----DDIRTFCKG   93 (94)
Q Consensus        85 ----~~l~~~l~~   93 (94)
                          ++|+++|++
T Consensus       455 ~~~~~~l~~~l~~  467 (511)
T 3e7w_A          455 FQLTSAIKKELAA  467 (511)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHh
Confidence                566766654

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.91  E-value=1.3e-24  Score=148.87  Aligned_cols=92  Identities=21%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCC-CCceEEEEEEEcCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIKLKENA   80 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~   80 (94)
                      +++|||+|||+|+++++|+++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.++.. .++.++++|+++++.
T Consensus       377 ~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~  456 (521)
T 3l8c_A          377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV  456 (521)
T ss_dssp             TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred             CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence            4678999999999999999999999999999999999999999999999999999999887554 457889999998764


Q ss_pred             CCC-------HHHHHHHHhc
Q psy5015          81 KLN-------ADDIRTFCKG   93 (94)
Q Consensus        81 ~~~-------~~~l~~~l~~   93 (94)
                      ..+       .++|+++|++
T Consensus       457 ~~~~~~~~~~~~~l~~~l~~  476 (521)
T 3l8c_A          457 KERFDRELELTKAIKASVKD  476 (521)
T ss_dssp             GGGCSSHHHHHHHHHHHSGG
T ss_pred             ccccccchhhHHHHHHHHHh
Confidence            321       4678887765

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.91  E-value=1.8e-25  Score=153.00  Aligned_cols=91  Identities=31%  Similarity=0.494  Sum_probs=23.4

Q ss_pred             CCeEEcCceEEEecCCeEEEEeec--CCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +|||+|||+|+++++|+++|.||.  +|+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.+++++++.++..
T Consensus       374 ~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~  453 (509)
T 3ivr_A          374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES  453 (509)
T ss_dssp             GGSEEEEEEEEECTTSCEEEEEEC--------------------------------------------------------
T ss_pred             cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC
Confidence            689999999999999999999999  999999999999999999999999999999999999888899999999888777


Q ss_pred             CCHHHHHHHHhcC
Q psy5015          82 LNADDIRTFCKGK   94 (94)
Q Consensus        82 ~~~~~l~~~l~~~   94 (94)
                      .+.++|+++|+++
T Consensus       454 ~~~~~l~~~l~~~  466 (509)
T 3ivr_A          454 IAADALAEFVASL  466 (509)
T ss_dssp             -------------
T ss_pred             CCHHHHHHHHHhh
Confidence            7778888888753

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.90  E-value=1.9e-23  Score=155.25  Aligned_cols=89  Identities=25%  Similarity=0.259  Sum_probs=81.8

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      +++||+|||+|++++||.++|+||.|++||++|+||+|.|||++|.+||+|.+|+|++.++..++..++++++..+  ..
T Consensus       836 g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~  913 (1304)
T 2vsq_A          836 GETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QL  913 (1304)
T ss_dssp             TCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SS
T ss_pred             CCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CC
Confidence            5679999999999999999999999999999999999999999999999999999999988878889999998754  46


Q ss_pred             CHHHHHHHHhc
Q psy5015          83 NADDIRTFCKG   93 (94)
Q Consensus        83 ~~~~l~~~l~~   93 (94)
                      +.++|+++|++
T Consensus       914 ~~~~l~~~l~~  924 (1304)
T 2vsq_A          914 SAEDVKAHLKK  924 (1304)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            78889998875

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.89  E-value=3e-23  Score=142.53  Aligned_cols=90  Identities=26%  Similarity=0.321  Sum_probs=75.1

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      ++||+|||+++++++|+++|.||.||+||++|++|+|.+||++|.+||+|.+++|++. ++..++.+++++++.++...+
T Consensus       405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~  483 (529)
T 2v7b_A          405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS  483 (529)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC
T ss_pred             cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc
Confidence            5899999999999999999999999999999999999999999999999999999999 556777889999987654322


Q ss_pred             ---HHHHHHHHhcC
Q psy5015          84 ---ADDIRTFCKGK   94 (94)
Q Consensus        84 ---~~~l~~~l~~~   94 (94)
                         .++|+++|+++
T Consensus       484 ~~~~~~l~~~l~~~  497 (529)
T 2v7b_A          484 EILAEELKAFVKDR  497 (529)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhh
Confidence               35788888753

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.89  E-value=6.7e-24  Score=140.63  Aligned_cols=90  Identities=19%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHh---cCCCeeeEEEE-EeeCCCCCceEEEEEEEc
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPNVLEAYAY-GVPDERMGEEVGISIKLK   77 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~   77 (94)
                      ..+|||+|||+|+++++| ++|+||.||+||++|+||+|.|||++|.   +||.|.+++|+ +.+++..++.++++|+..
T Consensus       225 ~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~  303 (358)
T 4gs5_A          225 TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENA  303 (358)
T ss_dssp             GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESC
T ss_pred             ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECC
Confidence            357999999999999888 6678999999999999999999998774   58999998776 667887888888888754


Q ss_pred             CCCCCCHHHHHHHHhc
Q psy5015          78 ENAKLNADDIRTFCKG   93 (94)
Q Consensus        78 ~~~~~~~~~l~~~l~~   93 (94)
                      .. ..+.++|+++|++
T Consensus       304 ~~-~~~~~~l~~~l~~  318 (358)
T 4gs5_A          304 MP-EALTERLTAEIRS  318 (358)
T ss_dssp             CC-HHHHHHHHHHHHH
T ss_pred             CC-CcCHHHHHHHHHh
Confidence            32 3455778888875

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.88  E-value=8.8e-23  Score=137.48  Aligned_cols=90  Identities=19%  Similarity=0.267  Sum_probs=78.9

Q ss_pred             CCCeEEcCceEEEecCC------e---EEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEE
Q psy5015           3 GYACGLKQDQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS   73 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G------~---~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~   73 (94)
                      ..+||+|||+++++++|      +   ++|.||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..++.+.++
T Consensus       297 ~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~  376 (436)
T 3qov_A          297 PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVE  376 (436)
T ss_dssp             CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEE
Confidence            36899999999999998      5   69999999999999999999999999999999999999999888788899999


Q ss_pred             EEEcCCCCCC----HHHHHHHHhc
Q psy5015          74 IKLKENAKLN----ADDIRTFCKG   93 (94)
Q Consensus        74 v~~~~~~~~~----~~~l~~~l~~   93 (94)
                      |++. +...+    .++++++|++
T Consensus       377 v~~~-~~~~~~~~~~~~l~~~l~~  399 (436)
T 3qov_A          377 VELS-DLSTDNYIELEKIRRDIIR  399 (436)
T ss_dssp             EEEC-TTCCCCHHHHHHHHHHHHH
T ss_pred             EEEc-CccccchhhHHHHHHHHHH
Confidence            9998 55554    5666666653

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.88  E-value=5.8e-24  Score=146.90  Aligned_cols=91  Identities=15%  Similarity=0.224  Sum_probs=23.3

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC-CCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +++||+|||+|++++||+++|.||.||+||++|++|+|.|||++|.+| |.+.+++|++.+++..++..++.++..++..
T Consensus       402 g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~  481 (562)
T 3ite_A          402 GRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAA  481 (562)
T ss_dssp             TEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------------------
T ss_pred             CCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccc
Confidence            345999999999999999999999999999999999999999999998 7788888888888877766665555443322


Q ss_pred             CC-------------HHHHHHHHhc
Q psy5015          82 LN-------------ADDIRTFCKG   93 (94)
Q Consensus        82 ~~-------------~~~l~~~l~~   93 (94)
                      ..             .++|+++|++
T Consensus       482 ~~~~~~~~~~~~~~~~~~l~~~~~~  506 (562)
T 3ite_A          482 VRGELRWINENYKEINNSLRQACEQ  506 (562)
T ss_dssp             -------------------------
T ss_pred             ccccccccccchhhHHHHHHHHHHh
Confidence            21             2467777765

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.87  E-value=1.2e-22  Score=137.08  Aligned_cols=90  Identities=18%  Similarity=0.290  Sum_probs=77.1

Q ss_pred             CCeEEcCceEEEecC-CeE-----EEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           4 YACGLKQDQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~-G~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      .+||+|||+++++++ |++     +|.||.||+||++|.+|+|.+||++|.+||+|.++++++++++..++.+.++|++.
T Consensus       305 ~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~  384 (443)
T 2y4o_A          305 VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELR  384 (443)
T ss_dssp             CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEEC
Confidence            589999999999999 986     89999999999999999999999999999999999999988776778899999987


Q ss_pred             C--CC---CCCHHHHHHHHhc
Q psy5015          78 E--NA---KLNADDIRTFCKG   93 (94)
Q Consensus        78 ~--~~---~~~~~~l~~~l~~   93 (94)
                      +  +.   ..+.++++++|++
T Consensus       385 ~~~~~~~~~~~~~~l~~~l~~  405 (443)
T 2y4o_A          385 SEAAASVTDGERAALARELQH  405 (443)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHH
T ss_pred             CcccccchhhHHHHHHHHHHH
Confidence            5  21   2334567766654

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.87  E-value=7.9e-23  Score=137.76  Aligned_cols=90  Identities=17%  Similarity=0.180  Sum_probs=77.6

Q ss_pred             CCeEEcCceEEEec-CCeE-----EEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEc
Q psy5015           4 YACGLKQDQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK   77 (94)
Q Consensus         4 ~~~~~TGD~~~~~~-~G~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~   77 (94)
                      ++||+|||++++++ +|++     +|.||.||+||++|.+|+|.+||++|.+||.|.++++++++++..++.++++|++.
T Consensus       303 ~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~  382 (437)
T 2y27_A          303 IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPC  382 (437)
T ss_dssp             CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBC
T ss_pred             hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEEC
Confidence            58999999999999 6985     89999999999999999999999999999999999999888777778899999987


Q ss_pred             CCCC---CCHHHHHHHHhc
Q psy5015          78 ENAK---LNADDIRTFCKG   93 (94)
Q Consensus        78 ~~~~---~~~~~l~~~l~~   93 (94)
                      ++..   .+.++++++|++
T Consensus       383 ~~~~~~~~~~~~l~~~l~~  401 (437)
T 2y27_A          383 PETAPDTAAIQVAKQALAY  401 (437)
T ss_dssp             TTTTTCHHHHHHHHHHHHH
T ss_pred             CCccchhhhHHHHHHHHHH
Confidence            6543   234566666654

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.86  E-value=6.4e-23  Score=142.06  Aligned_cols=87  Identities=23%  Similarity=0.268  Sum_probs=74.3

Q ss_pred             CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHH-hcCCCee--eEEEEEeeCCCCCceEEEEEEEcCCC-
Q psy5015           5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA-   80 (94)
Q Consensus         5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~-   80 (94)
                      +||+|||+|+++ +|.++|.||.||+||++|++|+|.|||++| ..+|.|.  +|+|++++++. ++.+++++++.++. 
T Consensus       436 ~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~  513 (590)
T 3kxw_A          436 IYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM  513 (590)
T ss_dssp             CBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC
T ss_pred             cEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc
Confidence            499999999999 999999999999999999999999999999 7899998  79999988765 67788888887653 


Q ss_pred             -CCCHHHHHHHHhc
Q psy5015          81 -KLNADDIRTFCKG   93 (94)
Q Consensus        81 -~~~~~~l~~~l~~   93 (94)
                       ..+.++|.++|++
T Consensus       514 ~~~~~~~l~~~l~~  527 (590)
T 3kxw_A          514 DDVAQDNLFNEIFE  527 (590)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHH
Confidence             2345667776654

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.86  E-value=1.5e-21  Score=136.81  Aligned_cols=84  Identities=12%  Similarity=0.090  Sum_probs=68.2

Q ss_pred             CeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCH
Q psy5015           5 ACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA   84 (94)
Q Consensus         5 ~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~   84 (94)
                      +||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+++..+. ++++++...  ....
T Consensus       396 ~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~--~~~~  472 (620)
T 4dg8_A          396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKA--DASP  472 (620)
T ss_dssp             EEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECT--TCCC
T ss_pred             eEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecCh--HHHH
Confidence            7999999999999999999999999999999999999999999999999999999988764444 444444332  2233


Q ss_pred             HHHHHHH
Q psy5015          85 DDIRTFC   91 (94)
Q Consensus        85 ~~l~~~l   91 (94)
                      +++++.|
T Consensus       473 ~~l~~~L  479 (620)
T 4dg8_A          473 QALLRQL  479 (620)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            4454443

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.71  E-value=7.1e-17  Score=91.17  Aligned_cols=60  Identities=22%  Similarity=0.349  Sum_probs=54.8

Q ss_pred             eecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCH
Q psy5015          25 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA   84 (94)
Q Consensus        25 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~   84 (94)
                      .|.|||||++|.|+||.+||++|.+||+|.++++++++++.+++.+.++|++.++...+.
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~   60 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY   60 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc
Confidence            389999999999999999999999999999999999999888999999999988765554

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.36  E-value=1.6e-06  Score=61.24  Aligned_cols=43  Identities=9%  Similarity=0.023  Sum_probs=39.4

Q ss_pred             EEcCceEEEec----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015           7 GLKQDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   49 (94)
Q Consensus         7 ~~TGD~~~~~~----~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~   49 (94)
                      |++||++++..    ...+.|.||.++++++.|.++++.+||+++.+
T Consensus       412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence            99999999974    45799999999999999999999999999884

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.30  E-value=1.4e-06  Score=61.27  Aligned_cols=44  Identities=7%  Similarity=-0.012  Sum_probs=40.1

Q ss_pred             EEcCceEEEec----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q psy5015           7 GLKQDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   50 (94)
Q Consensus         7 ~~TGD~~~~~~----~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~   50 (94)
                      |++||++++..    ..++.|.||.++++++.|+++++.+||+++.+.
T Consensus       400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred             EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence            99999999985    357899999999999999999999999999853

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.17  E-value=2e-05  Score=55.51  Aligned_cols=81  Identities=10%  Similarity=0.033  Sum_probs=54.4

Q ss_pred             EEcCceEEEecC----CeEEEEeecCCeEEeCcEEeChHHHHHHHhc------CC--CeeeEEEEEeeCCCCCceEEEEE
Q psy5015           7 GLKQDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT------HP--NVLEAYAYGVPDERMGEEVGISI   74 (94)
Q Consensus         7 ~~TGD~~~~~~~----G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~------~~--~v~~~~v~~~~~~~~~~~~~~~v   74 (94)
                      |++||++++..-    ..+.|.||.++++++.|.++++.+||+++.+      ..  .+.+..+........+ +-+.+.
T Consensus       407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~w  485 (581)
T 4epl_A          407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFW  485 (581)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEE
T ss_pred             EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEE
Confidence            999999998742    4689999999999999999999999999875      12  3556555543222223 333445


Q ss_pred             EEcCCCCCCHHHHHHH
Q psy5015          75 KLKENAKLNADDIRTF   90 (94)
Q Consensus        75 ~~~~~~~~~~~~l~~~   90 (94)
                      ++..  ..+.+.+.+.
T Consensus       486 E~~~--~~~~~~l~~~  499 (581)
T 4epl_A          486 EISG--ETNEDVLQDC  499 (581)
T ss_dssp             EESS--CCCHHHHHHH
T ss_pred             eecC--CCCHHHHHHH
Confidence            6642  2344444443

>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A

Probab=83.54  E-value=3.1  Score=21.19  Aligned_cols=43  Identities=21%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK   92 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~   92 (94)
                      ..++++.|.++|.|.+|..+.-+.     ...+.+..     .+.+++.+++.
T Consensus        15 ~~~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~-----~d~~~l~~~i~   57 (83)
T 2cvi_A           15 EREVMEKLLAMPEVKEAYVVYGEY-----DLIVKVET-----DTLKDLDQFIT   57 (83)
T ss_dssp             HHHHHHHHHTSTTEEEEEECBSSC-----SEEEEEEE-----SSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeeEEEEEcccC-----CEEEEEEE-----CCHHHHHHHHH
Confidence            478999999999999988763322     24455543     45666666654

>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}

Probab=83.45  E-value=2.6  Score=21.89  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.1

Q ss_pred             hHHHHHHHhcCCCeeeEEEEE
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYG   60 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~   60 (94)
                      ..++.+.|.++|.|.+|..+.
T Consensus        15 ~~~~~~~l~~~peV~~~~~vt   35 (92)
T 2djw_A           15 VQALGEAIAELPQVAEVYSVT   35 (92)
T ss_dssp             HHHHHHHHTTSTTEEEEEEES
T ss_pred             HHHHHHHHhcCCCeEEEEEee
Confidence            578889999999999998773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-26
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-24
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	3e-23
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-22
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-22
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-22
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-20

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 98.2 bits (243), Expect = 3e-26
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 2   DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 61
           DG+      D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+
Sbjct: 378 DGWYR--TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435

Query: 62  PDERMGEEVGISIKLKENAKLNADDIRTFCKGK 94
            D+R G+ V   +  +    L+AD + TFC+  
Sbjct: 436 ADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 92.3 bits (228), Expect = 3e-24
 Identities = 22/84 (26%), Positives = 39/84 (46%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D     ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE  
Sbjct: 419 DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP 478

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              + L+    +   +I  +   +
Sbjct: 479 AAVVVLEHGKTMTEKEIVDYVASQ 502

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 89.7 bits (222), Expect = 3e-23
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 496 DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 555

Query: 71  GISIKLKENAKLNAD---DIRTFCKGK 94
              + L    + + +   ++R + + +
Sbjct: 556 YAYVTLNHGEEPSPELYAEVRNWVRKE 582

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 88.1 bits (217), Expect = 1e-22
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 1   MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 60
                     D   L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462

Query: 61  VPDERMGEEVGISIKLKENAKLNADDIRTFCKGK 94
           +PD+ +GE   + I  ++ A   A +++ F + +
Sbjct: 463 MPDQFLGERSCVFIIPRDEA-PKAAELKAFLRER 495

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 87.3 bits (215), Expect = 2e-22
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           DQ     DG  + +GRI + +   G  +  +E+E  +  H  + E       D +    +
Sbjct: 397 DQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL 456

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
                 +++  +  + +R F   +
Sbjct: 457 CAYFVSEKH--IPLEQLRQFSSEE 478

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 86.5 bits (213), Expect = 4e-22
 Identities = 22/84 (26%), Positives = 35/84 (41%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D  V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E  
Sbjct: 411 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP 470

Query: 71  GISIKLKENAKLNADDIRTFCKGK 94
              +  +       +      K  
Sbjct: 471 LAVVVPRGEKPTPEELNEHLLKAG 494

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (201), Expect = 2e-20
 Identities = 21/74 (28%), Positives = 33/74 (44%)

Query: 11  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 70
           D     +DGY  ++GR+ D++   G  +   EIE  I   P V E    G  D+  G+ V
Sbjct: 486 DGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 545

Query: 71  GISIKLKENAKLNA 84
              + LK  +  + 
Sbjct: 546 AAFVVLKNKSSWST 559

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.94
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.94
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.94
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.93
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.93
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.92
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.91
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	91.03
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	89.15
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	88.31
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	88.2
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	87.95
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	84.11
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	83.47
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	83.02
d2cg4a2	86	Regulatory protein AsnC {Escherichia coli [TaxId:	81.74
d1i1ga2	80	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.53
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	80.92

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.94  E-value=6e-27  Score=162.85  Aligned_cols=91  Identities=23%  Similarity=0.380  Sum_probs=84.5

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL   82 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~   82 (94)
                      .+|||+|||+|+++++|+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++++|+++++...
T Consensus       488 ~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~  567 (643)
T d1pg4a_         488 FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP  567 (643)
T ss_dssp             STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred             CCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999889999999999988777


Q ss_pred             CH---HHHHHHHhc
Q psy5015          83 NA---DDIRTFCKG   93 (94)
Q Consensus        83 ~~---~~l~~~l~~   93 (94)
                      +.   ++|+++|++
T Consensus       568 ~~~~~~~i~~~~~~  581 (643)
T d1pg4a_         568 SPELYAEVRNWVRK  581 (643)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            65   368888765

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.94  E-value=5.8e-27  Score=158.02  Aligned_cols=92  Identities=25%  Similarity=0.373  Sum_probs=82.3

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      .+++||+|||+|+++++|.+++.||.+|+||++|++|+|.+||++|.+||.|.+|+|++.+++..++.++++|+++++..
T Consensus       410 ~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  489 (541)
T d1lcia_         410 DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT  489 (541)
T ss_dssp             CTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred             cCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999888999999999998888


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++|+++|++
T Consensus       490 ~~~~~l~~~~~~  501 (541)
T d1lcia_         490 MTEKEIVDYVAS  501 (541)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            899999999875

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.94  E-value=2.1e-26  Score=153.03  Aligned_cols=89  Identities=37%  Similarity=0.598  Sum_probs=85.2

Q ss_pred             CCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy5015           4 YACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN   83 (94)
Q Consensus         4 ~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~   83 (94)
                      +|||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+++++...+
T Consensus       378 ~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~  457 (503)
T d3cw9a1         378 DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS  457 (503)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred             CCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999988889999999999888899


Q ss_pred             HHHHHHHHh
Q psy5015          84 ADDIRTFCK   92 (94)
Q Consensus        84 ~~~l~~~l~   92 (94)
                      .++|+++++
T Consensus       458 ~~~l~~~~~  466 (503)
T d3cw9a1         458 ADALDTFCR  466 (503)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999885

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.93  E-value=4.3e-26  Score=153.25  Aligned_cols=90  Identities=18%  Similarity=0.189  Sum_probs=83.8

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +++|||+|||+|+++++|+|+|.||.+|+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++++++++  
T Consensus       388 ~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~--  465 (514)
T d1amua_         388 PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--  465 (514)
T ss_dssp             TTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--
T ss_pred             CCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC--
Confidence            458999999999999999999999999999999999999999999999999999999999999899999999998765  


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++|++++++
T Consensus       466 ~~~~~l~~~~~~  477 (514)
T d1amua_         466 IPLEQLRQFSSE  477 (514)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh
Confidence            578889998875

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6e-27  Score=162.00  Aligned_cols=79  Identities=27%  Similarity=0.358  Sum_probs=72.8

Q ss_pred             CCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           3 GYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         3 ~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      .+|||+|||+|++|++|+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++++..
T Consensus       478 ~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~  556 (640)
T d1ry2a_         478 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS  556 (640)
T ss_dssp             STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----
T ss_pred             CCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCC
Confidence            4699999999999999999999999999999999999999999999999999999999999989999999999987654

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=6e-25  Score=147.77  Aligned_cols=91  Identities=31%  Similarity=0.465  Sum_probs=84.4

Q ss_pred             CCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCC
Q psy5015           2 DGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK   81 (94)
Q Consensus         2 ~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~   81 (94)
                      +++|||+|||++++++||+|++.||.||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+++++ .
T Consensus       404 ~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~  482 (536)
T d1mdba_         404 TEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-A  482 (536)
T ss_dssp             CTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-C
T ss_pred             cccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-C
Confidence            467999999999999999999999999999999999999999999999999999999999998888899999998765 4


Q ss_pred             CCHHHHHHHHhc
Q psy5015          82 LNADDIRTFCKG   93 (94)
Q Consensus        82 ~~~~~l~~~l~~   93 (94)
                      .+.++|+++|++
T Consensus       483 ~~~~~l~~~l~~  494 (536)
T d1mdba_         483 PKAAELKAFLRE  494 (536)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh
Confidence            678889999875

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2e-25  Score=150.79  Aligned_cols=80  Identities=26%  Similarity=0.349  Sum_probs=61.0

Q ss_pred             CCCCCeEEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCC
Q psy5015           1 MDGYACGLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA   80 (94)
Q Consensus         1 ~~~~~~~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~   80 (94)
                      |+.+|||+|||+|++++||.+++.||.+++||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++|+|+++.+.
T Consensus       401 ~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~  480 (534)
T d1v25a_         401 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK  480 (534)
T ss_dssp             BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred             cccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999998899999999886543

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=91.03  E-value=0.36  Score=22.92  Aligned_cols=46  Identities=15%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ..-||..|.++|+|..+-+-..    .+   .+.+...++ ..+.++|.+.+++
T Consensus        17 ~~~Ie~~l~~~~GV~~v~v~~~----~~---~v~v~~d~~-~~~~~~i~~~i~~   62 (69)
T d2qifa1          17 VKAVETSVGELDGVSAVHVNLE----AG---KVDVSFDAD-KVSVKDIADAIED   62 (69)
T ss_dssp             HHHHHHHHHTSTTEEEEEEETT----TT---EEEEEECTT-TCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEEECC----CC---EEEEEECCC-CCCHHHHHHHHHH
Confidence            4579999999999988766322    11   244555543 4788888888764

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=89.15  E-value=0.58  Score=22.10  Aligned_cols=46  Identities=17%  Similarity=0.105  Sum_probs=31.8

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ..-||+.|.+.|+|..+.|-..    .+   .+.|...+. ..+.++|.+.+++
T Consensus        15 ~~~Ie~~l~~~~GV~~v~V~~~----~~---~v~v~~d~~-~~~~~~i~~~i~~   60 (68)
T d1cpza_          15 VARIEEAVGRISGVKKVKVQLK----KE---KAVVKFDEA-NVQATEICQAINE   60 (68)
T ss_dssp             HHHHHHHHHTSTTEEEEEEETT----TT---EEEEEECTT-TCCHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCcEEEEEECC----CC---EEEEEECCC-CCCHHHHHHHHHh
Confidence            4679999999999988776322    11   244555443 4788899888764

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.59  Score=22.27  Aligned_cols=46  Identities=13%  Similarity=0.105  Sum_probs=31.2

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ..-||+.|.+.|+|.++.|-..    .+   .+.|...+. ..+.++|.+.+++
T Consensus        18 ~~~Ie~~l~~~~GV~~v~v~~~----~~---~v~v~~d~~-~~~~~~i~~~i~~   63 (72)
T d2aw0a_          18 VQSIEGVISKKPGVKSIRVSLA----NS---NGTVEYDPL-LTSPETLRGAIED   63 (72)
T ss_dssp             HHHHHHHHHTSTTCCCEEEETT----TT---EEEEEECTT-TCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEEEECC----CC---EEEEEECCC-CCCHHHHHHHHHh
Confidence            4679999999999998766321    11   244555443 4678888887753

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=88.20  E-value=0.69  Score=22.06  Aligned_cols=46  Identities=9%  Similarity=0.070  Sum_probs=31.1

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ..-||+.|.++|+|..+-|-..    .+   .+.|...++ ..+.++|.+.+++
T Consensus        18 ~~~Ie~~l~~~~gV~~v~v~~~----~~---~~~v~~~~~-~~~~~~i~~~i~~   63 (72)
T d1osda_          18 PITVKKAISKVEGVSKVDVTFE----TR---QAVVTFDDA-KTSVQKLTKATAD   63 (72)
T ss_dssp             HHHHHHHHHTSTTEEEEEEETT----TT---EEEEEEETT-TCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEEEcC----CC---EEEEEECCC-CCCHHHHHHHHHh
Confidence            4579999999999998877321    22   233444443 4778888888764

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=87.95  E-value=0.74  Score=21.89  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=32.3

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ..-||+.|.+.|+|.++.|-....       .+.+...++ ..+.++|.+.+++
T Consensus        21 ~~~Ie~~l~~~~gV~~v~v~~~~~-------~~~v~~d~~-~~~~~~i~~~i~~   66 (72)
T d1p6ta1          21 AARIEKGLKRMPGVTDANVNLATE-------TVNVIYDPA-ETGTAAIQEKIEK   66 (72)
T ss_dssp             HHHHHHHHTTSSSEEEEEEEGGGT-------EEEEEECTT-TSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEEEcCCC-------EEEEEECCC-CCCHHHHHHHHHH
Confidence            567999999999998877743322       255555544 4678888888764

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=1.4  Score=21.34  Aligned_cols=46  Identities=11%  Similarity=-0.052  Sum_probs=31.7

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ..-||++|.+.|+|..+.+-..    .+   .+.|...+. ..+.++|.+.+++
T Consensus        23 ~~~ie~~l~~~~gv~~v~v~~~----~~---~v~v~~d~~-~~~~~~i~~~i~~   68 (79)
T d1kvja_          23 VWTIEQQIGKVNGVHHIKVSLE----EK---NATIIYDPK-LQTPKTLQEAIDD   68 (79)
T ss_dssp             HHHHHHHHHTTTTCSEEEEETT----TT---EEEEEECTT-TCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEEECC----CC---EEEEEECCC-CCCHHHHHHHHHh
Confidence            4679999999999999766322    22   244555443 4788888888764

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.47  E-value=1.1  Score=21.28  Aligned_cols=45  Identities=11%  Similarity=0.145  Sum_probs=30.5

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ..-||..|.+.|+|.++-|-.    ..+   .+.|...+  ..+.++|.+.+++
T Consensus        17 ~~~Ie~~l~~~~gV~~v~V~~----~~~---~~~v~~~~--~~~~~~i~~~i~~   61 (72)
T d2ggpb1          17 TNTINTQLRALKGVTKCDISL----VTN---ECQVTYDN--EVTADSIKEIIED   61 (72)
T ss_dssp             THHHHHHHTTSTTEEEEEECT----TTC---EEEEEECS--SCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEEEC----CCC---EEEEEECC--CCCHHHHHHHHHH
Confidence            567999999999998866631    122   24455544  3678888887764

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.02  E-value=1.5  Score=21.49  Aligned_cols=47  Identities=11%  Similarity=0.077  Sum_probs=31.5

Q ss_pred             ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHhc
Q psy5015          39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG   93 (94)
Q Consensus        39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~   93 (94)
                      ...-||..|.++|+|..+.+-    ...+   .+.|...++ ..+.++|.+.+++
T Consensus        23 C~~~Ie~~l~~~~GV~~v~vn----~~~~---~v~v~~~~~-~~~~~~i~~~I~~   69 (84)
T d1q8la_          23 CTSTIEGKIGKLQGVQRIKVS----LDNQ---EATIVYQPH-LISVEEMKKQIEA   69 (84)
T ss_dssp             SCHHHHHHHHTCTTEEEEEEC----STTT---EEEEEECTT-TCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCceEEEEE----CCCC---EEceeeccc-ccCHHHHHHHHHH
Confidence            457899999999999887662    1122   244555553 4677888887753

>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Lrp/AsnC-like transcriptional regulator C-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=81.74  E-value=1.8  Score=21.14  Aligned_cols=44  Identities=14%  Similarity=0.001  Sum_probs=29.6

Q ss_pred             ChHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015          39 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK   92 (94)
Q Consensus        39 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~   92 (94)
                      ...++.+.|.++|.|.+|..+.-..     -+.+.+..     .+.+++.+++.
T Consensus        15 ~~~~~~~~l~~~peV~~~~~vtG~~-----D~i~~v~~-----~d~~~l~~~i~   58 (86)
T d2cg4a2          15 DYPSALAKLESLDEVTEAYYTTGHY-----SIFIKVMC-----RSIDALQHVLI   58 (86)
T ss_dssp             GHHHHHHHHHTCTTEEEEEEESSSC-----SEEEEEEE-----SCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEEEEecCCc-----eEEEEEEE-----CCHHHHHHHHH
Confidence            4567889999999999998873322     24555554     35566666654

>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Lrp/AsnC-like transcriptional regulator C-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.53  E-value=1.5  Score=20.97  Aligned_cols=43  Identities=16%  Similarity=0.080  Sum_probs=25.9

Q ss_pred             hHHHHHHHhcCCCeeeEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHh
Q psy5015          40 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK   92 (94)
Q Consensus        40 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~   92 (94)
                      ..++.+.|.++|+|.+|..+.-.     ..+.+.+..     .+.+++.+++.
T Consensus        16 ~~~v~~~l~~~peV~~~~~vtG~-----~D~~~~v~~-----~d~~~l~~~l~   58 (80)
T d1i1ga2          16 LFEVAEKLKEYDFVKELYLSSGD-----HMIMAVIWA-----KDGEDLAEIIS   58 (80)
T ss_dssp             HHHHHHHHHHSTTEEEECCCSSS-----SSEEEEEEE-----SSHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEeEEEEECCC-----CCEEEEEEE-----CCHHHHHHHHH
Confidence            34555677779999987765222     235555554     35566666654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=80.92  E-value=0.44  Score=27.10  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             EEcCceEEEecCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q psy5015           7 GLKQDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   49 (94)
Q Consensus         7 ~~TGD~~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~   49 (94)
                      ..|-....+|++|.+.+.||.||.-. ...++.-.+++++|.+
T Consensus       114 ~~~P~~~liD~~G~i~y~G~idd~~~-~~~~~~~~~L~~Ai~~  155 (187)
T d2cvba1         114 LRTPEVFLFDERRLLRYHGRVNDNPK-DPSKVQSHDLEAAIEA  155 (187)
T ss_dssp             CEESEEEEECTTCBEEEEECSSSCTT-CGGGCCCCHHHHHHHH
T ss_pred             cceeeEEEEcCCCeEEEEeeecCCCC-CCCCCCHHHHHHHHHH
Confidence            45667788999999999999998632 1223444456555544