Psyllid ID: psy5037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAPMA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAElennnhsldGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAdtenyktkesapma
Flexible Loop (DISEMBL)
etlnlnkrsereaklatteidrfkyelnnlelernraQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETaelennnhsldGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRlqladtenyktkesapma
Low Complexity Region (SEG)
ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAPMA
Disordered region (IsUnstruct)
**********************FKYEL********************************************VKLQLQHYCCEVQRIEEILSK****RLDLLKHLKFI**********************************LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD****************************
Disordered Region (DISOPRED)
********************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*************KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY*********
Disordered Region (DISPRO)
*****NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ETLNLNKRSERExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQHYCCEVQRIEEILSKKESERLDLLKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVQDKDCSxxxxxxxxxxxxxxxxxxxxxxxxxxxxKYRLGEExxxxxxxxxxxxxxxxxxxxxxxxxxxxKTKESAPMA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q5RG45	1164	Centrosomal protein of 13	yes	N/A	0.825	0.158	0.273	4e-10
Q66GS9	1140	Centrosomal protein of 13	yes	N/A	0.821	0.161	0.272	3e-07
Q6P5D4	1140	Centrosomal protein of 13	yes	N/A	0.821	0.161	0.261	6e-06

>sp|Q5RG45|CP135_DANRE Centrosomal protein of 135 kDa OS=Danio rerio GN=cep135 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 108/194 (55%), Gaps = 9/194 (4%)

Query: 9   SEREAKLAT--TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
           S RE ++A+   ++D+ + EL ++  +R  A  E RRLQ +L  M + N  +  E++ + 
Sbjct: 791 SSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEAL 850

Query: 67  TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMK 126
            E +++KL++  Y  EV RIE +++ KE E  D+L+  + I  E+ + E      +G   
Sbjct: 851 NERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNN 910

Query: 127 SCK--NLLAESEKKVMKLEALVQDKDC-----SIKSLEAKLEELSHVTAQLETQVQCCQE 179
           S +   L +++E++ ++    +QD++      ++++ EA++  L+   ++LE +VQ  + 
Sbjct: 911 SIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARA 970

Query: 180 EKYRLGEELAGCQE 193
           EK  +  +LA  +E
Sbjct: 971 EKASVLADLASVRE 984

Centrosomal protein involved in centriole biogenesis. Acts as a scaffolding protein during early centriole biogenesis. Also required for centriole-centriole cohesion during interphase by acting as a platform protein for cep250 at the centriole.
Danio rerio (taxid: 7955)

>sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sapiens GN=CEP135 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 7/191 (3%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
           +RE      ++D    EL+ +   R  A  E RRLQ +L  M + N  I  ELEA+  E 
Sbjct: 789 DREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEK 848

Query: 70  EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
           E++K ++  Y  EV R E +++ KE E  DLL   + +     + E   H  +GE  S +
Sbjct: 849 EEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVR 908

Query: 130 -NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY 182
             LL+ ++E++ ++     LE  +Q+   +  + E+++  ++   ++LE +++  ++EK 
Sbjct: 909 LELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKA 968

Query: 183 RLGEELAGCQE 193
            +  +L+  +E
Sbjct: 969 TVLNDLSSLRE 979

Centrosomal protein involved in centriole biogenesis. Acts as a scaffolding protein during early centriole biogenesis. Also required for centriole-centriole cohesion during interphase by acting as a platform protein for CEP250 at the centriole.

Homo sapiens (taxid: 9606)

>sp|Q6P5D4|CP135_MOUSE Centrosomal protein of 135 kDa OS=Mus musculus GN=Cep135 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 98/191 (51%), Gaps = 7/191 (3%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
           +RE      ++D    EL+++   R  +  E RRLQ +L  M + N  I  ELEA+  E 
Sbjct: 789 DREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQEISLELEAAVQEK 848

Query: 70  EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
           E++K ++  Y  EV R E +++ KE E  DLL   + +     + E      +GE  S +
Sbjct: 849 EEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQQAEGENSSVR 908

Query: 130 -NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY 182
             LL+ ++E++ ++     LE  +Q+   +  + E+++  ++   +QLE +++  + EK 
Sbjct: 909 LELLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKA 968

Query: 183 RLGEELAGCQE 193
            +  +++  +E
Sbjct: 969 TMLGDVSSLRE 979

Centrosomal protein involved in centriole biogenesis. Acts as a scaffolding protein during early centriole biogenesis. Also required for centriole-centriole cohesion during interphase by acting as a platform protein for CEP250 at the centriole.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
328791605	397	PREDICTED: centrosomal protein of 135 kD	0.892	0.503	0.36	2e-23
380017057	676	PREDICTED: centrosomal protein of 135 kD	0.919	0.304	0.354	6e-23
328713843	1032	PREDICTED: hypothetical protein LOC10016	0.883	0.191	0.380	1e-22
345484545	868	PREDICTED: centrosomal protein of 135 kD	0.933	0.240	0.349	1e-22
332026529	393	Centrosomal protein of 135 kDa [Acromyrm	0.825	0.470	0.372	2e-22
350417848	1119	PREDICTED: hypothetical protein LOC10074	0.933	0.186	0.334	8e-21
307208304	446	Centrosomal protein of 135 kDa [Harpegna	0.857	0.430	0.354	1e-20
242005075	1136	hypothetical protein Phum_PHUM055770 [Pe	0.848	0.167	0.368	2e-19
307167225	388	Centrosomal protein of 135 kDa [Camponot	0.825	0.476	0.356	8e-17
357608405	297	putative centrosomal protein 135 [Danaus	0.633	0.478	0.394	8e-15

>gi|328791605|ref|XP_003251598.1| PREDICTED: centrosomal protein of 135 kDa-like [Apis mellifera]

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 117/200 (58%)

Query: 19  EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH 78
           E++  + +L  +  +R+ A  E RR Q +L  +      +Q+ELE SR E+ D+K QLQ 
Sbjct: 40  EMENLQRQLQTVSYDRDNAIQENRRTQDDLAAVTSEVRNLQRELETSRGESFDLKRQLQT 99

Query: 79  YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK 138
           Y  EV+R EE+L++KE+ER ++L H + +S E   LENNNHSL+ E    +  L  +  +
Sbjct: 100 YVSEVRRAEELLNRKENERSEMLNHFRSLSLEATVLENNNHSLESEAAEARGALKSARDR 159

Query: 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198
           ++ LE  + DKD  I+  E ++ EL+   A LETQ++   E+K+R   +L   ++    +
Sbjct: 160 LLDLERQLADKDSLIRGYETQISELTQNVASLETQLRQQGEQKHRAEADLTAVRDLCMKL 219

Query: 199 LRQKEELRLQLADTENYKTK 218
             QK+ L  QL D ++ KT+
Sbjct: 220 DEQKDTLMAQLDDKDSLKTQ 239

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017057|ref|XP_003692482.1| PREDICTED: centrosomal protein of 135 kDa-like [Apis florea]

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 117/206 (56%)

Query: 19  EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH 78
           E++  + +L  +  +R+ A  E RR Q +L         +Q+ELE SR E+ D+K QLQ 
Sbjct: 348 EMENLQRQLQTVSYDRDNAIQENRRTQDDLAAATSEVRNLQRELETSRGESFDLKRQLQT 407

Query: 79  YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK 138
           Y  EV+R EE+L++KE+ER ++L H + +S E   LENNNHSL+ E    +  L  +  +
Sbjct: 408 YVSEVRRAEELLNRKENERSEMLNHFRSLSLEATVLENNNHSLESEAAEARGALKSARDR 467

Query: 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198
           ++ LE  + DKD  I+  E ++ EL+   A LETQ++   E+K+R   +L   ++    +
Sbjct: 468 LLDLERQLADKDSLIRGYETQISELTQNVASLETQLRQQGEQKHRAEADLTAVRDLCMKL 527

Query: 199 LRQKEELRLQLADTENYKTKESAPMA 224
             QK+ L  QL D +  KT+    +A
Sbjct: 528 DEQKDTLMAQLDDKDTLKTQYDMQIA 553

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713843|ref|XP_001945549.2| PREDICTED: hypothetical protein LOC100163804 [Acyrthosiphon pisum]

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 122/205 (59%), Gaps = 7/205 (3%)

Query: 21  DRFKYELNNLE-----LERNRA--QSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVK 73
           D  K EL+N++     +E N    Q E +RLQ +L  + Q N  ++ ELEAS+ +AED+K
Sbjct: 710 DSLKLELSNIKAEYKLIESNSGSQQKEKKRLQNDLDMVVQDNKVLRAELEASKKQAEDLK 769

Query: 74  LQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLA 133
           +QLQ Y  E++R+EEIL  KESER ++L+  K ++ E  +LE+NN+SL+ E KS K LL 
Sbjct: 770 MQLQVYVLEIRRVEEILEVKESERDEILEQFKTLNCEATQLESNNYSLESEAKSTKTLLR 829

Query: 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQE 193
           E E ++  LE  + DK+  I S E+++  L+H    LE+Q+    +   +L ++L  C+E
Sbjct: 830 EKEHRMSDLERKLVDKEDLISSYESQISNLTHQIVSLESQLSSGNDRISKLEQDLHACRE 889

Query: 194 TLDTMLRQKEELRLQLADTENYKTK 218
              ++   K  L  +L   EN + K
Sbjct: 890 ICSSVDSAKFNLNERLGHVENLQHK 914

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484545|ref|XP_001605637.2| PREDICTED: centrosomal protein of 135 kDa-like [Nasonia vitripennis]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 126/209 (60%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
           ER+ +    ++D  + +L++  L+R  A  E RRLQ +L  ++    +I ++LEAS+ E+
Sbjct: 531 ERQMRSMQLDMDNLQRQLSSATLDRESAIQENRRLQDDLAAVSCEVRSILKDLEASKAES 590

Query: 70  EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
           +D+K QLQ Y  EV+R EE++S+KE+ER ++L H + +S E   LENNNHSL+ E    +
Sbjct: 591 QDLKRQLQTYVSEVRRAEELISEKENERTEMLNHFRSLSLEATVLENNNHSLESEAAEAR 650

Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
             L  +  +++ L+  + DKDC ++  EA++ EL+   A LE Q+Q   E++    E+L 
Sbjct: 651 GALQSARDQILDLQRQLSDKDCLVRGYEAQITELTQNVASLEIQLQQATEQRLCAEEDLR 710

Query: 190 GCQETLDTMLRQKEELRLQLADTENYKTK 218
             +    T+ +QKE +  +L +  + KT+
Sbjct: 711 TVRNLCMTLEQQKECISQRLNENTDLKTQ 739

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026529|gb|EGI66649.1| Centrosomal protein of 135 kDa [Acromyrmex echinatior]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 109/185 (58%)

Query: 32  LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91
           ++R  A  E R+LQ +L  +      +Q+ELE SR E  D+K QLQ Y  EV+R EE+L+
Sbjct: 13  VDRENAIHENRKLQDDLAALTCEMRNMQRELETSRAECYDLKRQLQTYVSEVRRAEELLN 72

Query: 92  KKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDC 151
           +KE+ER ++L H + +S E   LENNNHSL+ E    +  L  +  +++ LE  + DKDC
Sbjct: 73  RKENERTEMLNHFRSLSLEATVLENNNHSLESEAAEVRGALQTARHQILDLERQLADKDC 132

Query: 152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211
            IK  E+++  L+   A +E Q+Q   E+K+R+  +L   ++    + +QK+ L  QL D
Sbjct: 133 LIKGYESQISSLTQSVASMEMQLQQQIEQKHRIDTDLMAVRDLCVKLDQQKDTLTEQLGD 192

Query: 212 TENYK 216
            +  K
Sbjct: 193 KDTMK 197

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417848|ref|XP_003491609.1| PREDICTED: hypothetical protein LOC100747105 [Bombus impatiens]

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 119/209 (56%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
           +R+ +    E++  + +L     ++  A  E RR+Q +L         +Q E+EASR E+
Sbjct: 29  DRQLRSMQLEVENLQRQLQTASYDKENAIQENRRIQDDLAAATCEVRNLQCEIEASRAES 88

Query: 70  EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
            D+K QLQ Y  EV+R EE+L++KE+ER ++L H + +S E   LENNNHSL+ E    +
Sbjct: 89  YDLKRQLQTYVSEVRRAEELLNRKENERTEMLNHFRSLSLEATVLENNNHSLESEAAEAR 148

Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
             L  +  +++ LE  + DKD  I+  E ++ EL+   A +ETQ++   E+++R   +L 
Sbjct: 149 GALQSARDRLLDLERQLADKDSLIRGYETQISELTQSVASIETQLRQQGEQRHRAEADLT 208

Query: 190 GCQETLDTMLRQKEELRLQLADTENYKTK 218
             ++    + +QK+ L  QL D +  KT+
Sbjct: 209 AVRDLCMKLDQQKDTLMQQLDDKDALKTQ 237

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208304|gb|EFN85729.1| Centrosomal protein of 135 kDa [Harpegnathos saltator]

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 109/192 (56%)

Query: 26  ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQR 85
           + +   ++R  A  E R+LQ +L         +Q+ELEASR EA D+K QLQ Y  EV+R
Sbjct: 7   QFDAASIDRENAIQENRKLQDDLAAATCEVRNMQRELEASRAEAYDLKRQLQTYVSEVRR 66

Query: 86  IEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEAL 145
            EE+L++KE+ER ++L H + +S E   LE NNHSL+ E    +  L  +  +++ LE  
Sbjct: 67  AEELLNRKENERTEMLNHFRSLSLEATVLETNNHSLESEAAEARGALQTARHQMLDLERQ 126

Query: 146 VQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL 205
           + D+DC IK  E ++ +L+   A +ETQ++   E+K     +L   ++    + +QK+ L
Sbjct: 127 LADRDCLIKGYETQISKLTQSVANMETQLRQQTEQKLHAESDLMAIRDLCVKLDQQKDAL 186

Query: 206 RLQLADTENYKT 217
             QL D  + K 
Sbjct: 187 LEQLGDKNSAKA 198

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005075|ref|XP_002423400.1| hypothetical protein Phum_PHUM055770 [Pediculus humanus corporis] gi|212506444|gb|EEB10662.1| hypothetical protein Phum_PHUM055770 [Pediculus humanus corporis]

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 114/190 (60%)

Query: 19   EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH 78
            EIDR K EL   EL++     E RRLQ +L    +  +T ++EL+  + + E++K QLQ 
Sbjct: 827  EIDRLKEELEQCELQKEALIRENRRLQDDLASAAKDCLTARRELDLEKEDCENLKKQLQQ 886

Query: 79   YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK 138
            Y  EV++ EE+L+KKESER  +L H + +S E   LE+NNH+L+  +++ K+ L  +  K
Sbjct: 887  YVSEVKKAEELLTKKESERNQMLDHFRSLSIEATALESNNHTLESTVENTKSQLIAANNK 946

Query: 139  VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198
            +M LE  +  KD  + + E ++ EL+   A+LE++++   E K R  ++L   ++   T+
Sbjct: 947  IMDLEHQIASKDSLLYNYEKQIAELTAQIAELESKLRQQTEMKIRSEQDLKALRDLCSTL 1006

Query: 199  LRQKEELRLQ 208
              QKE LR Q
Sbjct: 1007 DGQKEALRRQ 1016

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167225|gb|EFN60929.1| Centrosomal protein of 135 kDa [Camponotus floridanus]

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 104/185 (56%)

Query: 32  LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91
           ++R  A  E R+LQ +L  M      +Q+E E SR E  D+K QLQ Y  EV+R EE+L+
Sbjct: 13  IDRENAIQENRKLQDDLAAMTCEVQNLQREQETSRAECYDLKRQLQTYVSEVRRAEELLN 72

Query: 92  KKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDC 151
           +KE+ER ++L H + +S E   LEN+NHSL+ E    K  L  +  ++  LE  + D +C
Sbjct: 73  RKENERTEMLNHFRSLSLEATVLENSNHSLESEAAEAKAALQTARHQIADLERQLTDAEC 132

Query: 152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211
            IK  E ++  L+   A +ETQ++   E+++R   +L   ++    + +QK+ L  QL D
Sbjct: 133 LIKGYETQISNLTQNVASMETQLRQQIEQRHRAETDLLAVRDLCVKLDQQKDTLVEQLGD 192

Query: 212 TENYK 216
               K
Sbjct: 193 KNTIK 197

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608405|gb|EHJ65983.1| putative centrosomal protein 135 [Danaus plexippus]

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 82/142 (57%)

Query: 40  EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99
           E + LQ  L D N H    + ELE S+ + + +K QLQHY  E++RIEE+LS+KE+ER D
Sbjct: 2   ENKHLQNSLADANGHLKITRIELEKSKKDVDGLKQQLQHYVAEIRRIEELLSQKEAERSD 61

Query: 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAK 159
           +L+H   +S E   LEN NHSL+ E  S    L     K+  LE  + DK+  I S  A+
Sbjct: 62  MLEHFASLSVEANILENTNHSLESESASKSMQLQSYVSKIQNLEEKLVDKEHIIDSQSAR 121

Query: 160 LEELSHVTAQLETQVQCCQEEK 181
           +  ++   + LE +++   EEK
Sbjct: 122 IAAMTCKISSLENEIKLMTEEK 143

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0036480	1059	Cep135 [Drosophila melanogaste	0.959	0.203	0.269	3.1e-17
ZFIN|ZDB-GENE-041210-325	1170	cep135 "centrosomal protein 13	0.888	0.170	0.277	1.2e-16
UNIPROTKB|Q66GS9	1140	CEP135 "Centrosomal protein of	0.937	0.184	0.271	2e-14
UNIPROTKB|F1ME99	1139	CEP135 "Uncharacterized protei	0.937	0.184	0.262	2.6e-14
UNIPROTKB|J9P569	919	CEP135 "Uncharacterized protei	0.937	0.228	0.262	1.1e-13
UNIPROTKB|F1PRN4	1137	CEP135 "Uncharacterized protei	0.937	0.184	0.262	1.4e-13
UNIPROTKB|I3LUU4	1107	CEP135 "Uncharacterized protei	0.919	0.186	0.263	2.3e-13
UNIPROTKB|E1BS91	1147	CEP135 "Uncharacterized protei	0.915	0.178	0.244	4.9e-13
UNIPROTKB|E1C7U7	1155	CEP135 "Uncharacterized protei	0.915	0.177	0.244	5e-13
RGD|1310726	1140	Cep135 "centrosomal protein 13	0.848	0.166	0.27	1.3e-12

FB|FBgn0036480 Cep135 [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 58/215 (26%), Positives = 108/215 (50%)

Query:     4 NLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELE 63
             N N++ + E    +TE    + ++  L+  R+ A +E RRL  +L D      T+Q++L 
Sbjct:   730 NRNRQRDSELTETSTESKTLRQQIVALKASRDEAIAENRRLMDKLSDAQVEARTLQKKLT 789

Query:    64 ASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDG 123
              S  +  ++K QL  Y  EV++ E++L +KE ER D+L     ++Q  A LE NN SL+ 
Sbjct:   790 DSELQVANMKQQLHKYVQEVKKAEDLLIQKEKERDDMLDQYHCLTQGQATLEGNNQSLEC 849

Query:   124 EMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYR 183
             E    +  + E E +V  L+  +Q + C++  +E +L         LE +++  +++   
Sbjct:   850 EAVEFRRQICELECEVHSLKEQLQLRQCALHDMEVQLTAARASVRCLERELENARDDIRV 909

Query:   184 LGEELAGCQETLDTMLRQKEELRLQLADTENYKTK 218
                +L   +E  D +  ++ +L  +L D    + K
Sbjct:   910 QKVDLEARKELCDKLDVERSKLNAELNDVNEIRKK 944

GO:0007099 "centriole replication" evidence=IMP

GO:0005814 "centriole" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0007288 "sperm axoneme assembly" evidence=IMP

GO:0032053 "microtubule basal body organization" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0051297 "centrosome organization" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IMP

GO:0008017 "microtubule binding" evidence=IDA

ZFIN|ZDB-GENE-041210-325 cep135 "centrosomal protein 135" [Danio rerio (taxid:7955)]

 Score = 219 (82.2 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 58/209 (27%), Positives = 116/209 (55%)

Query:     9 SEREAKLATT--EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
             S RE ++A+   ++D+ + EL ++  +R  A  E RRLQ +L  M + N  +  E++ + 
Sbjct:   791 SSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEAL 850

Query:    67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMK 126
              E +++KL++  Y  EV RIE +++ KE E  D+L+  + I  E+ + E      +G   
Sbjct:   851 NERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNN 910

Query:   127 SCK-NLLA-ESEKKVMKLEALVQDKDC-----SIKSLEAKLEELSHVTAQLETQVQCCQE 179
             S +  LL+ ++E++ ++    +QD++      ++++ EA++  L+   ++LE +VQ  + 
Sbjct:   911 SIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARA 970

Query:   180 EKYRLGEELAGCQETLDTMLRQKEELRLQ 208
             EK  +  +LA  +E L   L   +EL ++
Sbjct:   971 EKASVLADLASVRE-LCVKLDSSKELTVR 998

GO:0010457 "centriole-centriole cohesion" evidence=IEA

GO:0007099 "centriole replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|Q66GS9 CEP135 "Centrosomal protein of 135 kDa" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 60/221 (27%), Positives = 115/221 (52%)

Query:     1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ 60
             ETL +N+  +RE      ++D    EL+ +   R  A  E RRLQ +L  M + N  I  
Sbjct:   783 ETL-VNR--DREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISL 839

Query:    61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
             ELEA+  E E++K ++  Y  EV R E +++ KE E  DLL   + +     + E   H 
Sbjct:   840 ELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQ 899

Query:   121 LDGEMKSCK-NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173
              +GE  S +  LL+ ++E++ ++     LE  +Q+   +  + E+++  ++   ++LE +
Sbjct:   900 AEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEE 959

Query:   174 VQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
             ++  ++EK  +  +L+  +E L   L   +++  Q  +++N
Sbjct:   960 LRHQEDEKATVLNDLSSLRE-LCIKLDSGKDIMTQQLNSKN 999

GO:0007099 "centriole replication" evidence=IMP

GO:0005814 "centriole" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0010457 "centriole-centriole cohesion" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1ME99 CEP135 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 58/221 (26%), Positives = 116/221 (52%)

Query:     1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ 60
             ETL +N+  +RE      ++D    EL+ +   +  +  E RRLQ +L  M + N  I  
Sbjct:   783 ETL-INR--DREISSLRRQLDAAHKELDEVGRSKEMSFKENRRLQDDLATMARENQQISL 839

Query:    61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
             ELEA+  E E++K ++ +Y  EV R E +++ KE E  DLL   + +     + E   H 
Sbjct:   840 ELEAAVQEKEEMKSRVHNYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQ 899

Query:   121 LDGEMKSCK-NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173
              +GE  S +  LL+ ++E++ ++     LE  +Q+   +  + E+++  ++   ++LE +
Sbjct:   900 AEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHMNAHHAYESQISSMAKAISRLEEE 959

Query:   174 VQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
             ++  ++EK  +  +L+  +E L   L   +++  Q  +++N
Sbjct:   960 LRHQEDEKAAVLNDLSSLRE-LCIKLDSGKDIMTQQLNSKN 999

GO:0010457 "centriole-centriole cohesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007099 "centriole replication" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|J9P569 CEP135 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 58/221 (26%), Positives = 114/221 (51%)

Query:     1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ 60
             ETL  N+  ERE      ++D    EL+ +   +  +  E RRLQ +L  M + N  I  
Sbjct:   562 ETLT-NR--EREISSLRRQLDAAHKELDEVGKSKEVSFKENRRLQEDLNTMARENQEISL 618

Query:    61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
             ELEA+  E E++K ++ +Y  EV R E +++ KE E  DLL   + +     + E   H 
Sbjct:   619 ELEAAVQEKEEMKSRVHNYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQ 678

Query:   121 LDGEMKSCK-NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173
              +GE  S +  LL+ ++E++ ++     LE  +Q+   +  + E+++  ++   ++LE +
Sbjct:   679 AEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEE 738

Query:   174 VQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
             ++  ++ K  +  +L+  +E L   L   +++  Q  +++N
Sbjct:   739 LRHQEDAKAAVLNDLSSLRE-LCIKLDSGKDIMTQQLNSKN 778

GO:0010457 "centriole-centriole cohesion" evidence=IEA

GO:0007099 "centriole replication" evidence=IEA

UNIPROTKB|F1PRN4 CEP135 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 58/221 (26%), Positives = 114/221 (51%)

Query:     1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ 60
             ETL  N+  ERE      ++D    EL+ +   +  +  E RRLQ +L  M + N  I  
Sbjct:   783 ETLT-NR--EREISSLRRQLDAAHKELDEVGKSKEVSFKENRRLQEDLNTMARENQEISL 839

Query:    61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
             ELEA+  E E++K ++ +Y  EV R E +++ KE E  DLL   + +     + E   H 
Sbjct:   840 ELEAAVQEKEEMKSRVHNYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQ 899

Query:   121 LDGEMKSCK-NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173
              +GE  S +  LL+ ++E++ ++     LE  +Q+   +  + E+++  ++   ++LE +
Sbjct:   900 AEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEE 959

Query:   174 VQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
             ++  ++ K  +  +L+  +E L   L   +++  Q  +++N
Sbjct:   960 LRHQEDAKAAVLNDLSSLRE-LCIKLDSGKDIMTQQLNSKN 999

GO:0010457 "centriole-centriole cohesion" evidence=IEA

GO:0007099 "centriole replication" evidence=IEA

UNIPROTKB|I3LUU4 CEP135 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 57/216 (26%), Positives = 112/216 (51%)

Query:     1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ 60
             ETL L++  +RE      ++D    EL+ +   +  +  E RRLQ +L  + + N  I  
Sbjct:   783 ETL-LHR--DREISSLQRQLDAAHKELDEVGRAKEISFKENRRLQDDLATVARENQQISL 839

Query:    61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
             ELEA+  E E++K ++ +Y  EV R E +++ KE E  DLL   + +     + E   H 
Sbjct:   840 ELEAAVQEKEEMKSRVHNYITEVSRWESLMAAKEKENQDLLDRFQMLHHRAEDWEVKAHQ 899

Query:   121 LDGEMKSCK-NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173
              +GE  S +  LL+ ++E++ ++     LE  +Q+   +  + E+++  ++   ++LE +
Sbjct:   900 AEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAVSRLEEE 959

Query:   174 VQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL 209
             ++  +EEK  +  +L+  +E    +   K+ +  QL
Sbjct:   960 LRQQEEEKAAVLNDLSSLRELCIKLDSGKDIMTQQL 995

GO:0010457 "centriole-centriole cohesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007099 "centriole replication" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|E1BS91 CEP135 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 52/213 (24%), Positives = 107/213 (50%)

Query:     5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64
             L+ R +RE      ++D    E+      +  A  E RRLQ +L  M + N  +  ELE 
Sbjct:   786 LSSR-DREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELED 844

Query:    65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124
             +  E E++K ++ +Y  EV R E +++ KE E  +LL+  + +  +  + E   H  +GE
Sbjct:   845 AIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGE 904

Query:   125 MKSCK-NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177
               S +  LL+ +++++ ++     LE  +Q+   + ++ E+++  ++   ++LE  ++  
Sbjct:   905 SSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKRE 964

Query:   178 QEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210
              ++K  +  +L   +E    +   K+ L  QLA
Sbjct:   965 HQDKSSVLADLTSVRELCVKLEASKDLLSRQLA 997

GO:0007099 "centriole replication" evidence=IEA

GO:0010457 "centriole-centriole cohesion" evidence=IEA

UNIPROTKB|E1C7U7 CEP135 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 52/213 (24%), Positives = 107/213 (50%)

Query:     5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64
             L+ R +RE      ++D    E+      +  A  E RRLQ +L  M + N  +  ELE 
Sbjct:   789 LSSR-DREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELED 847

Query:    65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124
             +  E E++K ++ +Y  EV R E +++ KE E  +LL+  + +  +  + E   H  +GE
Sbjct:   848 AIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGE 907

Query:   125 MKSCK-NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177
               S +  LL+ +++++ ++     LE  +Q+   + ++ E+++  ++   ++LE  ++  
Sbjct:   908 SSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKRE 967

Query:   178 QEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210
              ++K  +  +L   +E    +   K+ L  QLA
Sbjct:   968 HQDKSSVLADLTSVRELCVKLEASKDLLSRQLA 1000

GO:0005814 "centriole" evidence=IEA

GO:0007099 "centriole replication" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0010457 "centriole-centriole cohesion" evidence=IEA

RGD|1310726 Cep135 "centrosomal protein 135" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 54/200 (27%), Positives = 103/200 (51%)

Query:     1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ 60
             ETL  N+  +RE      ++D    EL+++   R  +  E RRLQ +L  M + N  I  
Sbjct:   783 ETLT-NR--DREINSLRRQLDATHKELDDVGKSREISYKENRRLQDDLATMARENQEISL 839

Query:    61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
             ELEA+  E E++K ++  Y  EV R E +++ KE E  DLL   + +     + E     
Sbjct:   840 ELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHNRAEDWEIKAQQ 899

Query:   121 LDGEMKSCK-NLLA-ESEKKVMK-----LEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173
              +GE  S +  LL+ ++E++ ++     LE  +Q+   +  + E+++  ++   +QLE +
Sbjct:   900 AEGENSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSQLEEE 959

Query:   174 VQCCQEEKYRLGEELAGCQE 193
             ++  + EK  +  +++  +E
Sbjct:   960 LRRHESEKATVLGDVSSLRE 979

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=IEA;ISO

GO:0007099 "centriole replication" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0010457 "centriole-centriole cohesion" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.003

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 51/228 (22%), Positives = 105/228 (46%), Gaps = 14/228 (6%)

Query: 6   NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTEL--------------YDM 51
            +  E E  L    ++  + EL  L+ E   A+ E+  L  EL               ++
Sbjct: 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279

Query: 52  NQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQET 111
            +    +Q+EL A   E   ++ Q Q     +  +E  L + E++  +L   L  +++E 
Sbjct: 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339

Query: 112 AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE 171
           AELE     L  E++S +  L E E ++ +LE+ +++ +  +++L +K+ +L    A L 
Sbjct: 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399

Query: 172 TQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE 219
            +++  +    RL +     Q+ ++ +L++ EE  L+    E  + +E
Sbjct: 400 NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 50/210 (23%), Positives = 105/210 (50%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
           ER+ +    E+   + EL  L+      + E+  L+ EL ++ +    +++ELE+     
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 70  EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
             +K +++    + Q ++E L + E E  +  + L  + +E   LE     L+ E++  +
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
             + E E+K+ +LE  +++ +  ++ L+ +LEEL     +LE +++  +EEK  L EEL 
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 190 GCQETLDTMLRQKEELRLQLADTENYKTKE 219
             +  L  +  + E+LR +L + E    + 
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERL 924

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 40/215 (18%), Positives = 96/215 (44%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
            RE +    +I+  + ++  LE      + E+  L+ EL  + +    + +++ A R + 
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 70  EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
             ++ +++     + ++ + L++ E+E  +L + L+   +E AE E     L+ +++  K
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
             L    + + +L A +   +    +L  +LE L    A  E +++  +E+   L E++ 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 190 GCQETLDTMLRQKEELRLQLADTENYKTKESAPMA 224
                ++ +    EEL  +L    N +      +A
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERASLEEALA 890

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 3/205 (1%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
           E +A+L   E+     +L  L  E    + E+ RL+ EL ++ +     ++E+E  ++E 
Sbjct: 217 ELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSEL 276

Query: 70  EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
           E+++ +L+    E+  ++E + + E E   L + L+ +  E  ELE     L  ++++ K
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336

Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
             L E E  + +LE L+ + + + + LE KL  L     +LE   +  +EE   L  ELA
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALL---EELEELFEALREELAELEAELA 393

Query: 190 GCQETLDTMLRQKEELRLQLADTEN 214
             +  L+ + R+ E L  +L     
Sbjct: 394 EIRNELEELKREIESLEERLERLSE 418

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 47/209 (22%), Positives = 102/209 (48%), Gaps = 7/209 (3%)

Query: 8   RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
           R++R +     E+   + EL  LE +  + + E++ L+ EL  +      ++++LE    
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 68  EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127
           + E++K +L     E+++++  L + E E  +L + L+ + +   ELE    SL+  +  
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 128 CKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEE 187
            K  + E E+K   L+         ++ LE +LEE       LE +++  ++ + RL +E
Sbjct: 777 LKEEIEELEEKRQALQE-------ELEELEEELEEAERRLDALERELESLEQRRERLEQE 829

Query: 188 LAGCQETLDTMLRQKEELRLQLADTENYK 216
           +   +E ++ +  + +EL  +L + E   
Sbjct: 830 IEELEEEIEELEEKLDELEEELEELEKEL 858

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 43/214 (20%), Positives = 96/214 (44%), Gaps = 7/214 (3%)

Query: 7   KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
           ++ +   +    E++  + EL  L+      + E+  L+  L  + +    ++++ +A +
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792

Query: 67  TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELEN-------NNH 119
            E E+++ +L+     +  +E  L   E  R  L + ++ + +E  ELE           
Sbjct: 793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852

Query: 120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179
            L+ E++  K  L E E +  +LE  +++ +   + LE +L EL    A+L+ +++  +E
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRE 912

Query: 180 EKYRLGEELAGCQETLDTMLRQKEELRLQLADTE 213
               L  +L   +  L  +  + EE      +TE
Sbjct: 913 RLEELEAKLERLEVELPELEEELEEEYEDTLETE 946

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 52/205 (25%), Positives = 107/205 (52%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
           E + +    E+   K EL +LE      + ++  L+ +L ++ +    +++ELE  ++  
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 70  EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
           E+++ +L+    E++ ++E L + E E   L + L  + +E  ELE    +L  E++  +
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799

Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
             L E+E+++  LE  ++  +   + LE ++EEL     +LE ++   +EE   L +EL 
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELE 859

Query: 190 GCQETLDTMLRQKEELRLQLADTEN 214
             +E L+ +  +KEEL  +L + E 
Sbjct: 860 ELKEELEELEAEKEELEDELKELEE 884

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 11/215 (5%)

Query: 5   LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64
           L  RSE        E+ R +  L  L+ E +  QSE+RR++  L +++Q      +++  
Sbjct: 667 LFSRSEPA------ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720

Query: 65  SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124
              E E ++ + +     ++ +EE LS  E E  ++   LK +     ELE + H L+  
Sbjct: 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780

Query: 125 MKSCKNLLAES-----EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179
           +   +  L+ S     + ++ KLE  V   +  ++ +E KL  L+     LE ++Q  QE
Sbjct: 781 LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840

Query: 180 EKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
           ++  L E++   ++ ++ +  +KEEL  +L + E 
Sbjct: 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 38/212 (17%), Positives = 97/212 (45%), Gaps = 12/212 (5%)

Query: 8   RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
           R E      + E+     ++  +E E  + + E  +L+  L ++ +   +++QE+E  ++
Sbjct: 699 RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758

Query: 68  EAEDVKLQLQHYCCEVQRIEEILSKKESERLD-----LLKHLKFISQETAELENNNHSLD 122
           E ++++ +++    ++ ++EE L+  E+         +   L  + +E + +E     ++
Sbjct: 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818

Query: 123 GEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY 182
            ++          EK++ +L+    D    IKS+E ++E L+    +LE +++  +    
Sbjct: 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878

Query: 183 RLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
            L   L   +       ++++EL  QL + E 
Sbjct: 879 DLESRLGDLK-------KERDELEAQLRELER 903

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 35/209 (16%), Positives = 88/209 (42%)

Query: 5   LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64
           L + +++   L   E  R K ++  LE E    +  +   + EL D  +    ++ E++ 
Sbjct: 274 LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK 333

Query: 65  SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124
              E E+++ +++       ++ E  ++ + E  DL   L+ + +E AE  +       +
Sbjct: 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393

Query: 125 MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL 184
           ++  K  + E ++++ +L+  +Q     +  L A +  +     +LE + +    E  + 
Sbjct: 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453

Query: 185 GEELAGCQETLDTMLRQKEELRLQLADTE 213
             +L      L    ++  +L+ +    E
Sbjct: 454 EWKLEQLAADLSKYEQELYDLKEEYDRVE 482

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 14/211 (6%)

Query: 7   KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
            R E E +     I +   EL  LE E    +  +   + EL +       ++ ++E  +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 67  TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL-------KHLKFISQETAELENNNH 119
            E + ++  L     E+  + E  +        L        + L+ + ++  EL  +  
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179
           SL  E++  + L+ E E ++  L       + ++  L ++LEELS    +LE++      
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS---- 911

Query: 180 EKYRLGEELAGCQETLDTMLRQKEELRLQLA 210
               L  EL   +E L  +  + E L +++ 
Sbjct: 912 ---ELRRELEELREKLAQLELRLEGLEVRID 939

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 4/211 (1%)

Query: 10  EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
           E E  L    ++  + EL  LE      + ++  L+ EL +       ++Q L       
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAK 360

Query: 70  EDVKLQLQHYCCEV----QRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
           E+++ +L     E+    + + E L++ E+E  ++   L+ + +E   LE     L   +
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 126 KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
           +  K  L E E ++ +L+  +++ +  ++ LE +LEEL     +LE ++   QEE  RL 
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480

Query: 186 EELAGCQETLDTMLRQKEELRLQLADTENYK 216
           +EL+  +  LD +  ++   +   A  E  +
Sbjct: 481 KELSSLEARLDRLEAEQRASQGVRAVLEALE 511

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 45/199 (22%), Positives = 85/199 (42%)

Query: 8   RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
             ER       E++  +  L  LE E ++  +E+  L+ E+ +  +    + +E    + 
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364

Query: 68  EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127
           E ED++ +L+    E     + L     +   L + +  + +E   L+     L  E+  
Sbjct: 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD 424

Query: 128 CKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEE 187
               +A  E K+ +LE   +DK   IK  E KLE+L+   ++ E ++   +EE  R+ +E
Sbjct: 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484

Query: 188 LAGCQETLDTMLRQKEELR 206
           L+  Q  L     Q     
Sbjct: 485 LSKLQRELAEAEAQARASE 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/180 (17%), Positives = 89/180 (49%)

Query: 35  NRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94
           +R +      + EL ++ +    ++ +LE    E + +K +L+     ++ +   L + E
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 95  SERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK 154
            +  +L + L  + +E  +L++    L+ E++  +  L E ++++ +LE  ++  + ++ 
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 155 SLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
            L+ ++EEL      L+ +++  +EE       L   +  L+++ +++E L  ++ + E 
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 23/209 (11%)

Query: 7   KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
           +  E E + A   +D  + EL +LE  R R + E+  L+ E+ ++ +    +++ELE   
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855

Query: 67  TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMK 126
            E E++K +L+    E + +E+ L + E E+               ELE     L+ E+ 
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEK--------------EELEEELRELESELA 901

Query: 127 SCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEEL--SHVTAQLETQVQCCQEEKYRL 184
             K  + +  +++ +LEA ++  +  +  LE +LEE     +  +LE +++  +EE   L
Sbjct: 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961

Query: 185 G-------EELAGCQETLDTMLRQKEELR 206
           G       EE    +E  + +  Q+E+L 
Sbjct: 962 GPVNLRAIEEYEEVEERYEELKSQREDLE 990

Length = 1163

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 40/208 (19%), Positives = 82/208 (39%), Gaps = 16/208 (7%)

Query: 8   RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
            +EREA  A +E+ + + E   +  E   A+  + + Q EL  + +    +Q  L+    
Sbjct: 101 ETEREA--ARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE 158

Query: 68  EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127
           +   ++ Q Q      ++++   ++ +S+ LDL      I QE   L             
Sbjct: 159 QRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR---------- 208

Query: 128 CKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEE 187
             N      +++ +  A  Q    +I+  +A++ + +   A    Q++  + +  RL   
Sbjct: 209 -ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETA 267

Query: 188 LAGCQ---ETLDTMLRQKEELRLQLADT 212
            A  +     L+   +    LR Q A T
Sbjct: 268 QARLEQEVAQLEAYYQAYVRLRQQAAAT 295

Length = 499

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.0
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.98
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.95
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.93
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.93
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.92
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.82
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.77
PRK02224	880	chromosome segregation protein; Provisional	98.72
PRK02224	880	chromosome segregation protein; Provisional	98.7
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.52
PHA02562	562	46 endonuclease subunit; Provisional	98.5
KOG0161|consensus	1930		98.5
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.48
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.44
PRK11637	428	AmiB activator; Provisional	98.44
PHA02562	562	46 endonuclease subunit; Provisional	98.41
PRK11637	428	AmiB activator; Provisional	98.4
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.38
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.35
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.32
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.3
KOG0161|consensus	1930		98.3
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.29
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.29
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.29
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.24
KOG0250|consensus	1074		98.23
PRK03918	880	chromosome segregation protein; Provisional	98.22
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.13
KOG0996|consensus	1293		98.13
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.11
KOG0250|consensus	1074		98.1
KOG0996|consensus	1293		98.04
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	98.02
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.02
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.99
KOG4674|consensus	1822		97.93
PRK04778	569	septation ring formation regulator EzrA; Provision	97.91
KOG0964|consensus	1200		97.9
KOG0933|consensus	1174		97.89
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.88
KOG0977|consensus	546		97.82
PRK01156	895	chromosome segregation protein; Provisional	97.79
KOG0933|consensus	1174		97.79
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.74
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.74
PRK01156	895	chromosome segregation protein; Provisional	97.73
KOG0964|consensus	1200		97.72
PRK04863	1486	mukB cell division protein MukB; Provisional	97.69
PRK09039	343	hypothetical protein; Validated	97.68
KOG0977|consensus	546		97.67
PRK09039	343	hypothetical protein; Validated	97.61
KOG0976|consensus	1265		97.6
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.58
KOG4674|consensus	1822		97.58
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.55
PRK04863	1486	mukB cell division protein MukB; Provisional	97.51
PRK04778	569	septation ring formation regulator EzrA; Provision	97.48
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.46
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.46
KOG0980|consensus	980		97.43
KOG0971|consensus	1243		97.41
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.4
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.39
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.3
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.28
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.26
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	97.24
KOG0018|consensus	1141		97.2
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.13
KOG0971|consensus	1243		97.08
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	97.06
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.06
KOG0612|consensus	1317		97.05
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.05
KOG0946|consensus	970		97.04
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.0
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.97
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.95
KOG0018|consensus	1141		96.93
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.91
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.89
KOG1003|consensus	205		96.87
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.86
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.85
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.84
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.62
KOG4643|consensus	1195		96.62
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.61
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.57
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.55
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.52
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.51
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.4
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	96.4
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.34
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.31
KOG0978|consensus	698		96.3
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	96.15
KOG0995|consensus	581		96.03
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	96.02
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.99
KOG1029|consensus	1118		95.92
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.88
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.87
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.84
KOG0978|consensus	698		95.8
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.78
KOG0994|consensus	1758		95.78
KOG0963|consensus	629		95.73
KOG0612|consensus	1317		95.72
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.63
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.62
KOG0995|consensus	581		95.56
KOG0963|consensus	629		95.55
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.51
KOG0976|consensus	1265		95.5
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.49
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.45
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.43
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.43
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.37
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	95.34
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	95.32
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	95.32
KOG0980|consensus	980		95.26
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	95.24
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.2
KOG0243|consensus	1041		95.07
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.05
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	95.0
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.99
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.91
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.88
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.77
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.74
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.74
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.72
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.58
PF13514	1111	AAA_27: AAA domain	94.56
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.56
PRK10246	1047	exonuclease subunit SbcC; Provisional	94.5
KOG0994|consensus	1758		94.5
PRK11281	1113	hypothetical protein; Provisional	94.5
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	94.48
KOG0962|consensus	1294		94.47
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	94.47
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.45
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.44
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.43
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	94.41
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.38
PRK11281	1113	hypothetical protein; Provisional	94.35
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	94.3
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	94.28
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.28
COG4372	499	Uncharacterized protein conserved in bacteria with	94.19
COG4372	499	Uncharacterized protein conserved in bacteria with	94.08
KOG0962|consensus	1294		94.0
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.97
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	93.92
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.89
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.83
KOG0979|consensus	1072		93.82
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.81
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.72
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.65
KOG0243|consensus	1041		93.64
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.58
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.42
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	93.4
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.37
COG2433	652	Uncharacterized conserved protein [Function unknow	93.31
PRK09343	121	prefoldin subunit beta; Provisional	93.13
KOG0946|consensus	970		93.08
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.96
COG2433	652	Uncharacterized conserved protein [Function unknow	92.96
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.91
PRK10698	222	phage shock protein PspA; Provisional	92.91
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	92.73
KOG1029|consensus	1118		92.72
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	92.56
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	92.54
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	92.26
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	92.09
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.08
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.91
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.86
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	91.77
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	91.65
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.59
KOG0979|consensus	1072		91.46
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	91.42
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	91.37
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	91.22
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.17
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.15
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	91.12
PF13166	712	AAA_13: AAA domain	91.05
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	90.93
COG4477	570	EzrA Negative regulator of septation ring formatio	90.86
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.72
KOG4360|consensus	596		90.61
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	90.59
PRK10884	206	SH3 domain-containing protein; Provisional	90.49
KOG1937|consensus	521		90.49
KOG1003|consensus	205		90.47
KOG4673|consensus	961		90.33
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	90.29
PF02994	370	Transposase_22: L1 transposable element; InterPro:	90.27
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	90.24
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	90.17
PRK03947	140	prefoldin subunit alpha; Reviewed	89.87
PRK10884	206	SH3 domain-containing protein; Provisional	89.83
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	89.5
KOG4643|consensus	1195		89.44
KOG1853|consensus	333		89.39
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	89.13
PRK10246	1047	exonuclease subunit SbcC; Provisional	88.89
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	88.68
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	88.63
KOG4673|consensus	961		88.51
PRK10698	222	phage shock protein PspA; Provisional	88.4
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	88.01
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.91
KOG4360|consensus	596		87.78
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	87.55
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.51
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.36
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	86.98
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	86.87
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.73
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	86.29
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	86.25
KOG1899|consensus	861		86.16
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.12
KOG1962|consensus	216		86.12
PRK10929	1109	putative mechanosensitive channel protein; Provisi	85.98
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	85.92
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	85.92
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	85.9
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	85.88
KOG0249|consensus	916		85.81
KOG4302|consensus	660		85.71
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.66
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	85.55
PF15294	278	Leu_zip: Leucine zipper	85.23
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	84.69
KOG4809|consensus	654		84.57
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	84.52
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	84.33
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.9
PRK00736	68	hypothetical protein; Provisional	83.87
PRK02793	72	phi X174 lysis protein; Provisional	83.86
PRK00295	68	hypothetical protein; Provisional	83.85
KOG1853|consensus	333		83.62
KOG0999|consensus	772		83.56
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	83.54
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	83.49
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.36
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	82.95
TIGR02231	525	conserved hypothetical protein. This family consis	82.76
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	82.68
PRK02119	73	hypothetical protein; Provisional	82.52
KOG2991|consensus	330		82.1
KOG0247|consensus	809		81.93
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.68
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	81.52
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	81.3
PF04859	131	DUF641: Plant protein of unknown function (DUF641)	81.23
KOG2991|consensus	330		81.12
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	80.99
PF02994	370	Transposase_22: L1 transposable element; InterPro:	80.89
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	80.83
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	80.54
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	80.38
PRK01203	130	prefoldin subunit alpha; Provisional	80.29
PRK04406	75	hypothetical protein; Provisional	80.18

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.00  E-value=9.5e-07  Score=90.68  Aligned_cols=58  Identities=19%  Similarity=0.278  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037         156 LEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE  213 (224)
Q Consensus       156 ~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~  213 (224)
                      ++..+..+...+..+..++..+..+...+...+..+......+....+.+...+..+.
T Consensus       873 ~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  930 (1164)
T TIGR02169       873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE  930 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333334444444444444444443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.98  E-value=1.3e-06  Score=89.72  Aligned_cols=69  Identities=16%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQ  208 (224)
Q Consensus       140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~q  208 (224)
                      ..+...+......+..++.++..+......+..++..++.+...+...+..+...+..+...+..+..+
T Consensus       416 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~  484 (1164)
T TIGR02169       416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE  484 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.95  E-value=1.5e-06  Score=75.82  Aligned_cols=205  Identities=18%  Similarity=0.207  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037          16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKES   95 (224)
Q Consensus        16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~   95 (224)
                      +...+..+..+|.........+..++..|+..+..+......+...+......+.++.........-+..++.....-+.
T Consensus        13 ~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~ee   92 (237)
T PF00261_consen   13 AEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEE   92 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34444555555555555555555555555555555544444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q psy5037          96 ERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA  168 (224)
Q Consensus        96 E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~  168 (224)
                      .+..|..++..+...+...+.++..+...+..+...+       ..+..++..++..|....+.+.+++..-.....+..
T Consensus        93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~  172 (237)
T PF00261_consen   93 RIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERED  172 (237)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence            4444444444444444444444444444444444444       555666666677777777777777777777777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhc
Q psy5037         169 QLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKES  220 (224)
Q Consensus       169 ~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~  220 (224)
                      .++..++.|......+..-...+...|.+|...++.|...|.........+.
T Consensus       173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~  224 (237)
T PF00261_consen  173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ  224 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888877666655443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.93  E-value=2.2e-06  Score=89.64  Aligned_cols=116  Identities=27%  Similarity=0.368  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         104 LKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYR  183 (224)
Q Consensus       104 ~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~  183 (224)
                      +..+..++..|..+.+.+..++..+..+...+..++..+...+..+...+.....++..+...+..++..+..++.++..
T Consensus       809 ~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~  888 (1163)
T COG1196         809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE  888 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444445555555555555666666666666666666666666677777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhh
Q psy5037         184 LGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE  219 (224)
Q Consensus       184 l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l  219 (224)
                      +...+..+......+...++.+...++.+......+
T Consensus       889 l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  924 (1163)
T COG1196         889 LEEELRELESELAELKEEIEKLRERLEELEAKLERL  924 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777776654444433

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.93  E-value=3.2e-06  Score=86.51  Aligned_cols=36  Identities=8%  Similarity=0.279  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHY   79 (224)
Q Consensus        44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~   79 (224)
                      ++.++..+..+...+..++.....++..+..++..+
T Consensus       731 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~  766 (1179)
T TIGR02168       731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL  766 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.92  E-value=2.5e-06  Score=89.23  Aligned_cols=120  Identities=24%  Similarity=0.320  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      +...+..+..++..+..++..+.+++++.......+...+..+..++..+...+..+...+..+......+..++..++.
T Consensus       791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  870 (1163)
T COG1196         791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEA  870 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666677777777777666677777777777777777777777777777777777888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhh
Q psy5037         180 EKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE  219 (224)
Q Consensus       180 er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l  219 (224)
                      ++..+...+...+.....++..+..+...+.........+
T Consensus       871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  910 (1163)
T COG1196         871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL  910 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888887777777777666554443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.82  E-value=1.3e-05  Score=69.81  Aligned_cols=197  Identities=18%  Similarity=0.194  Sum_probs=117.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037          13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK   92 (224)
Q Consensus        13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~   92 (224)
                      ...+...+......+..+......+...+..+.++|+.+..++..+..+|.......++....+..+-......++.|..
T Consensus        17 ~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~   96 (237)
T PF00261_consen   17 LEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEE   96 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34455555556666666666666666666666666666666666666666666666665555555555555554444444


Q ss_pred             HHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHH
Q psy5037          93 KESERLD--------------LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEA  158 (224)
Q Consensus        93 kE~E~~~--------------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~  158 (224)
                      ++.....              ...++..+...+.+.+.|+..+++.+..+.-++..+.+.+.+++..-..+......|+.
T Consensus        97 lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~  176 (237)
T PF00261_consen   97 LEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEE  176 (237)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence            4444443              55555666667777777777777777777777766666666655555555555455555


Q ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         159 KLEELSH-------VTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL  209 (224)
Q Consensus       159 qL~~l~~-------~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL  209 (224)
                      +|..|..       +....+..+..|....+.+..+|...+.....+...++..-..|
T Consensus       177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444       44455555666666666666666666666666666555544443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.77  E-value=5e-05  Score=68.05  Aligned_cols=82  Identities=17%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037          13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK   92 (224)
Q Consensus        13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~   92 (224)
                      ..+.+.+|..||++||.+...+..+.-++..+..+++++..............+.++..++..+.....--..++..|..
T Consensus        49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~  128 (312)
T PF00038_consen   49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS  128 (312)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence            44567777777777777666666666665555555555555444444444444444444444444333333333333333


Q ss_pred             HH
Q psy5037          93 KE   94 (224)
Q Consensus        93 kE   94 (224)
                      +.
T Consensus       129 L~  130 (312)
T PF00038_consen  129 LK  130 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK02224 chromosome segregation protein; Provisional

Probab=98.72  E-value=4.1e-05  Score=77.52  Aligned_cols=151  Identities=18%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037          19 EIDRFKYELNNLELERNRAQSE------VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK   92 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E------~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~   92 (224)
                      ++..|..+++.++...+.+...      +..++..++.+..........++.....+..+..++..+..++..+...-..
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~  562 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAE  562 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555444433332222      2233333333333333333333333333333333333333333333332233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy5037          93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQL  170 (224)
Q Consensus        93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~l  170 (224)
                      ++.+..++.+.+..++..+..++..+..++ .+.++.-++..+...+..++..+..+......+..+|.+++..+..+
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        563 AEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444333333 23333333333344444444444444333334444444444444443

>PRK02224 chromosome segregation protein; Provisional

Probab=98.70  E-value=5e-05  Score=76.96  Aligned_cols=74  Identities=22%  Similarity=0.256  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRL  207 (224)
Q Consensus       134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~  207 (224)
                      .+..++..++..+..+...+..+......+......++..+..++.+...+..++..+......+...+..+..
T Consensus       318 ~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~  391 (880)
T PRK02224        318 ELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE  391 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444333333333333344444444444444444443333333333333333333333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.52  E-value=0.00013  Score=73.36  Aligned_cols=100  Identities=15%  Similarity=0.205  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037          27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF  106 (224)
Q Consensus        27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~  106 (224)
                      |+-++............||.|++.+..+....+.-++.....+..+......|.+||..+.+.+..++.++..|-..|+.
T Consensus       324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~  403 (775)
T PF10174_consen  324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIEN  403 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33355555666666667777777777777777777777777777788888888888888888888888888887777777


Q ss_pred             HHHHHHHHHhhhhhhhhhhh
Q psy5037         107 ISQETAELENNNHSLDGEMK  126 (224)
Q Consensus       107 l~~e~~~lE~r~~~lE~e~n  126 (224)
                      |...+..-+..+..+...++
T Consensus       404 Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  404 LEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            77766665555555555555

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.50  E-value=0.0003  Score=67.61  Aligned_cols=59  Identities=15%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      +..++..++.+......+..++...+.++.++...+..|...+..++..+...+.....
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~  273 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ  273 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555555544444

>KOG0161|consensus

Probab=98.50  E-value=0.00032  Score=76.11  Aligned_cols=206  Identities=23%  Similarity=0.331  Sum_probs=94.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          10 EREAKLATTEIDRFKYELNNL-------ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCE   82 (224)
Q Consensus        10 ~~~~~~~~~e~~~lr~ql~~l-------r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E   82 (224)
                      ++.++....++.-|+.+++..       ..++..+...|+.++..+......+..+.++-...+..+.++...++.-...
T Consensus       928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek 1007 (1930)
T KOG0161|consen  928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEK 1007 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556666666666643       3333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037          83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE  162 (224)
Q Consensus        83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~  162 (224)
                      +..+.......+....+|...+..-..-...+|...+.++|++..++-....+...+..+..........+..+.+++..
T Consensus      1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            33333333344444444444443333334445555555555554333333334444444444444444555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037         163 LSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY  215 (224)
Q Consensus       163 l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~  215 (224)
                      ...-++.+...+++|......+..+|..-|....+++..+..+...+.++...
T Consensus      1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555554443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.48  E-value=0.00074  Score=60.48  Aligned_cols=86  Identities=17%  Similarity=0.266  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037          23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK  102 (224)
Q Consensus        23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle  102 (224)
                      +..+|..++...+++..++.+++.+++.+..++..+..+++........++..+.....++...-.....++..+..|.+
T Consensus        52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e  131 (312)
T PF00038_consen   52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE  131 (312)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence            34444456677777777777777777777777777777777666666666666666666666666666666666666666


Q ss_pred             HHHHHH
Q psy5037         103 HLKFIS  108 (224)
Q Consensus       103 ~~~~l~  108 (224)
                      ++.++.
T Consensus       132 El~fl~  137 (312)
T PF00038_consen  132 ELEFLK  137 (312)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR00606 rad50 rad50

Probab=98.44  E-value=0.00031  Score=74.59  Aligned_cols=71  Identities=8%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy5037         139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC--QETLDTMLRQKEELRLQL  209 (224)
Q Consensus       139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~--re~~~kld~~~e~l~~qL  209 (224)
                      +..++..+......+..++..+..++..+..+..++..++..+..+...|.-.  ...+..+...+..|..++
T Consensus       972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606       972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444555555555555555555555555555555555555444  333344444444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11637 AmiB activator; Provisional

Probab=98.44  E-value=0.00045  Score=64.98  Aligned_cols=82  Identities=10%  Similarity=0.170  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037          18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER   97 (224)
Q Consensus        18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~   97 (224)
                      .++..+++++..+...+..+.++.+.++..+..+...+..+...|.....++..+..++.....++..++..|.......
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444443333


Q ss_pred             HH
Q psy5037          98 LD   99 (224)
Q Consensus        98 ~~   99 (224)
                      ..
T Consensus       127 ~~  128 (428)
T PRK11637        127 AA  128 (428)
T ss_pred             HH
Confidence            33

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.41  E-value=0.00029  Score=67.64  Aligned_cols=14  Identities=7%  Similarity=0.463  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHH
Q psy5037          17 TTEIDRFKYELNNL   30 (224)
Q Consensus        17 ~~e~~~lr~ql~~l   30 (224)
                      ..++..+..++..+
T Consensus       180 ~~~i~~l~~~i~~l  193 (562)
T PHA02562        180 NQQIQTLDMKIDHI  193 (562)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444433

>PRK11637 AmiB activator; Provisional

Probab=98.40  E-value=0.0014  Score=61.70  Aligned_cols=88  Identities=9%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037          21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDL  100 (224)
Q Consensus        21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~L  100 (224)
                      +.++.+|+++...+....+++..++..+..+...+..+..+|......+..+..++.....++..++..|...+..+...
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777777777777777777777777777777777777777776776666666666666666666666666666665


Q ss_pred             HHHHHHHH
Q psy5037         101 LKHLKFIS  108 (224)
Q Consensus       101 le~~~~l~  108 (224)
                      .+.+...-
T Consensus       123 ~~~l~~rl  130 (428)
T PRK11637        123 ERLLAAQL  130 (428)
T ss_pred             HHHHHHHH
Confidence            55554443

>TIGR00606 rad50 rad50

Probab=98.38  E-value=0.00036  Score=74.04  Aligned_cols=161  Identities=15%  Similarity=0.162  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHH--
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTI-------------QQELEASRTEAEDVKLQLQHYCC--   81 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l-------------~~ele~~e~eleeLk~~~~~~~~--   81 (224)
                      ..++..++.++..+......+..+...+...+..+..+...+             ..++..+...++.+...+..+.+  
T Consensus       743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~  822 (1311)
T TIGR00606       743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR  822 (1311)
T ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence            345555555555555555555555555555555555544444             67777777777777777766654  


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------hHHHHHHHHHHHHHHhHHh
Q psy5037          82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------AESEKKVMKLEALVQDKDC  151 (224)
Q Consensus        82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------~~~~~ri~~le~~I~e~~~  151 (224)
                      .+..+++.+..+..++..+...+..+..+...+...+..+...++.+.-..          ..+..++..+...+..+..
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677777777666655555555555555555555544443333333          3334444444444444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         152 SIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       152 ~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      .|..++.+|..+...+..+..++..+
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~  928 (1311)
T TIGR00606       903 EIKDAKEQDSPLETFLEKDQQEKEEL  928 (1311)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            44444545544444444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.35  E-value=0.0018  Score=62.72  Aligned_cols=198  Identities=15%  Similarity=0.191  Sum_probs=108.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q psy5037          13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ-----------HYCC   81 (224)
Q Consensus        13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~-----------~~~~   81 (224)
                      -..+..|+..+|++++.+-..+..+.........-..........|..+|..+...++.......           ....
T Consensus       132 L~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~  211 (522)
T PF05701_consen  132 LDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQ  211 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666555555555555544444444444444444444444444333322111           1123


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHH------------------HHHHHHH
Q psy5037          82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESE------------------KKVMKLE  143 (224)
Q Consensus        82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~------------------~ri~~le  143 (224)
                      +...++..+...+.+...|..+|    ..+..++.++...-..+..++-++..+.                  ..+.+..
T Consensus       212 ~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~  287 (522)
T PF05701_consen  212 DAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAK  287 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHH
Confidence            33444455555555555555555    3445566666666666666666653332                  2245555


Q ss_pred             HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037         144 ALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN  214 (224)
Q Consensus       144 ~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~  214 (224)
                      .++.+....+......+..+...+..|..+|...+.+...+......+...+..|...+..+..+|.+...
T Consensus       288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~  358 (522)
T PF05701_consen  288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA  358 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence            66666666666666666666666666666666666666666666666666666666666666666655433

Several sequences in this family are described as being myosin heavy chain-like.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.32  E-value=0.00063  Score=68.60  Aligned_cols=167  Identities=23%  Similarity=0.325  Sum_probs=100.9

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037           9 SEREAKLATTEIDRFKYELNNL-------ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC   81 (224)
Q Consensus         9 ~~~~~~~~~~e~~~lr~ql~~l-------r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~   81 (224)
                      .+-++.+.-.|+..||..|+..       ......+..+.++++.+|.++.........+|..+...++.|...+.+-..
T Consensus       334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~  413 (775)
T PF10174_consen  334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDR  413 (775)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667778888888888863       334444555555555555555555555555555555555555554444444


Q ss_pred             HHHHHHHHHh--------------------hHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy5037          82 EVQRIEEILS--------------------KKESERLD-----------LLKHLKFISQETAELENNNHSLDGEMKSCKN  130 (224)
Q Consensus        82 E~~rlE~~i~--------------------~kE~E~~~-----------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~l  130 (224)
                      .+..+...+.                    .++.-+..           ..++++....++..|...++.+.+++.+..+
T Consensus       414 ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~  493 (775)
T PF10174_consen  414 QLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKEL  493 (775)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3333333332                    22222222           5677788888888999999999999999888


Q ss_pred             hHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         131 LLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ  175 (224)
Q Consensus       131 e~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~  175 (224)
                      .+..+++.+.++-....-..+.|+.++..++..+.....|+.+|.
T Consensus       494 ~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~  538 (775)
T PF10174_consen  494 QLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLE  538 (775)
T ss_pred             HHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            887776666666655555555555555555555555555555553

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.30  E-value=0.001  Score=66.59  Aligned_cols=209  Identities=16%  Similarity=0.211  Sum_probs=158.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037          15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE   94 (224)
Q Consensus        15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE   94 (224)
                      ..+.||.+||..|.+.|-.=.++...+..+...=-.+..++..++.+.+.++..+..|...+|.-..-|..+|-.|..--
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888777766666666666555555444556666666666667777777777777777777777777776665


Q ss_pred             HHHHHHHHHHHHHH----------------------HHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhH---
Q psy5037          95 SERLDLLKHLKFIS----------------------QETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDK---  149 (224)
Q Consensus        95 ~E~~~Lle~~~~l~----------------------~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~---  149 (224)
                      .-+..+..++..-+                      +-.+.+-.|.+++|.++--++.++...++++..++.++.++   
T Consensus       502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555444443322                      22334677889999999999999999999999999988533   


Q ss_pred             ----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCCC
Q psy5037         150 ----DCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAPM  223 (224)
Q Consensus       150 ----~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~~  223 (224)
                          ...++.+-+.|+.|...-..||.-|..-.-=+-.|-..|..+|....-+++.+-.-..++..++.+.+++-+-|
T Consensus       582 ~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~  659 (697)
T PF09726_consen  582 EKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM  659 (697)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                33577778888899999999999999988888899999999999999999999999999999999988886644

; GO: 0016021 integral to membrane

>KOG0161|consensus

Probab=98.30  E-value=0.0013  Score=71.55  Aligned_cols=202  Identities=21%  Similarity=0.271  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL   98 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~   98 (224)
                      ++.-+.-++........++..+.+.++..+..+...+..+...+..+..+......++..+..+|..+++.++.+.++..
T Consensus       909 ~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk  988 (1930)
T KOG0161|consen  909 ELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKK  988 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444455555555555555555555555555555554


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhh-------hhhhhhhhhhH-------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q psy5037          99 DLLKHLKFISQETAELENNNHSL-------DGEMKSCKNLL-------AESEKKVMKLEALVQDKDCSIKSLEAKLEELS  164 (224)
Q Consensus        99 ~Lle~~~~l~~e~~~lE~r~~~l-------E~e~nel~le~-------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~  164 (224)
                      .+.+..+.+...+...+.++.++       ++.+.++...+       ..++-.+..++.+...+...|..+..+.+.+.
T Consensus       989 ~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~ 1068 (1930)
T KOG0161|consen  989 ELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELD 1068 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            44443333333333333322222       22222222211       22334444556666666666666677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhc
Q psy5037         165 HVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKES  220 (224)
Q Consensus       165 ~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~  220 (224)
                      ......+.+|..++.+.+.....+..+...+..|.+.+..+...|..-...++.++
T Consensus      1069 ~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1069 NQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777776666666555443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.29  E-value=0.004  Score=60.45  Aligned_cols=71  Identities=14%  Similarity=0.123  Sum_probs=52.8

Q ss_pred             HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037         140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA  210 (224)
Q Consensus       140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~  210 (224)
                      ..+..+.......+...+.++.+-.....-|-.+|..+..-|+....+|..+|-.+..+..++.....+|-
T Consensus       279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lk  349 (546)
T PF07888_consen  279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELK  349 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            34455556666667777777777788888888888888888888888888888777777766666555553

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.29  E-value=0.0019  Score=62.68  Aligned_cols=187  Identities=16%  Similarity=0.245  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037          23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK  102 (224)
Q Consensus        23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle  102 (224)
                      |..+|..+-..+.++.+.+..|+.....+..++..+...+.....+.+.|+.+.+++......+....+.+.....++..
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~  220 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ  220 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666666666666666666666666666666666666666666555555555555554444555555


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhh---hhHhH----HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         103 HLKFISQETAELENNNHSLDGEMKSCK---NLLAE----SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ  175 (224)
Q Consensus       103 ~~~~l~~e~~~lE~r~~~lE~e~nel~---le~~~----~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~  175 (224)
                      ++..+..++..+..+....+.....++   .+++.    +..++...-.++.+.......+..++..+...+..+++.|.
T Consensus       221 ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lq  300 (546)
T PF07888_consen  221 RIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQ  300 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            555555555444444433322222221   11111    11222222222222223333455555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         176 CCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL  209 (224)
Q Consensus       176 ~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL  209 (224)
                      .-+.+..-+..+|+++....|..-+.....+-+.
T Consensus       301 aSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~  334 (546)
T PF07888_consen  301 ASQQEAELLRKELSDAVNVRDRTMAELHQARLEA  334 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            5555556666666666665555555444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.29  E-value=0.0018  Score=55.01  Aligned_cols=156  Identities=15%  Similarity=0.177  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHH
Q psy5037          21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHY---CCEVQRIEEILSKKESER   97 (224)
Q Consensus        21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~---~~E~~rlE~~i~~kE~E~   97 (224)
                      +.|=-++..+-....-+..+|..++..++.+..-+..|..+|.++...+..+..-++.|   ..|+..+...+...+.+.
T Consensus         4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~   83 (193)
T PF14662_consen    4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEEN   83 (193)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666677777788999999999999999999999999999999999999999999   899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC  176 (224)
Q Consensus        98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~  176 (224)
                      ..|..+.+-+..+...|...++.+.-+..-+..+...+..++..|-.........+..|+.-+.-....+.+-......
T Consensus        84 ~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e  162 (193)
T PF14662_consen   84 RSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE  162 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999998888888877766666665555555555555555555544444444433333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.24  E-value=0.00069  Score=59.46  Aligned_cols=106  Identities=19%  Similarity=0.261  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037          22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL  101 (224)
Q Consensus        22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll  101 (224)
                      .|.-+++-+...+......+...+..++++.....++..++++.+.++..++..+++....+.+++..++...     =.
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~-----~~   88 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK-----DE   88 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cH
Confidence            3333444444444444444444444444444444444444444333333333333333333333333332221     22


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037         102 KHLKFISQETAELENNNHSLDGEMKSCKNLL  132 (224)
Q Consensus       102 e~~~~l~~e~~~lE~r~~~lE~e~nel~le~  132 (224)
                      .+|..|..++..|..+..+++.++..+.-+.
T Consensus        89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~  119 (239)
T COG1579          89 RELRALNIEIQIAKERINSLEDELAELMEEI  119 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666665555555553333

>KOG0250|consensus

Probab=98.23  E-value=0.0035  Score=64.50  Aligned_cols=155  Identities=18%  Similarity=0.300  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHH
Q psy5037          59 QQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK  138 (224)
Q Consensus        59 ~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~r  138 (224)
                      +.+++.....+.++...+.+.-+.+..+.+.-+....|+..+-.-++.+..+...++..++...+.+...+-....++..
T Consensus       301 ~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~  380 (1074)
T KOG0250|consen  301 QEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQ  380 (1074)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444555555555556666666777777777777777777777777777777777666666


Q ss_pred             HHHHHHHH-HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037         139 VMKLEALV-QDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE  213 (224)
Q Consensus       139 i~~le~~I-~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~  213 (224)
                      |++++++. ......+...+-.++.|...+..++..+..|+.+...+..++....+......+.+..+...+...+
T Consensus       381 I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~  456 (1074)
T KOG0250|consen  381 IADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS  456 (1074)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666 5556666666666677777777777777777777777777777776666666666666655554444

>PRK03918 chromosome segregation protein; Provisional

Probab=98.22  E-value=0.0038  Score=63.26  Aligned_cols=27  Identities=30%  Similarity=0.534  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRR   43 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~r   43 (224)
                      ..++..|..++..+......+..++..
T Consensus       458 ~~ei~~l~~~~~~l~~~~~~l~~~~~~  484 (880)
T PRK03918        458 TAELKRIEKELKEIEEKERKLRKELRE  484 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.13  E-value=0.00089  Score=54.39  Aligned_cols=138  Identities=19%  Similarity=0.236  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      +.+||-..+.+-.+.+.+...+..+.........++..|..++..++.+++.+...++.+..-+...+......+    .
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~   77 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----Q   77 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----H
Confidence            346666677777777777777777777777777777777777666666666666666666655555544443333    5


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLE  161 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~  161 (224)
                      |...+..|..+++..+.++..+...+......-..+..++..++.+....+..+..+..++.
T Consensus        78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen   78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            77777777777777777776666666555444444444444444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0996|consensus

Probab=98.13  E-value=0.003  Score=65.37  Aligned_cols=107  Identities=16%  Similarity=0.225  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHH
Q psy5037          26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK-------KESERL   98 (224)
Q Consensus        26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~-------kE~E~~   98 (224)
                      .+.+++....++..+..+.+..|..++..+..+.++|+.....+.+++.-...+..++......|..       .+.+..
T Consensus       385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~  464 (1293)
T KOG0996|consen  385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD  464 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777777777777777777777777777777777777777766555555555544444443       333333


Q ss_pred             H----HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037          99 D----LLKHLKFISQETAELENNNHSLDGEMKSCKNLL  132 (224)
Q Consensus        99 ~----Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~  132 (224)
                      +    +...-..+++++..++..+..+...+|..+-++
T Consensus       465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~  502 (1293)
T KOG0996|consen  465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSEL  502 (1293)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    222223344444444444444444444444444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.11  E-value=0.01  Score=57.59  Aligned_cols=117  Identities=16%  Similarity=0.203  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037          16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKES   95 (224)
Q Consensus        16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~   95 (224)
                      ..+++.+.|.|+...-.....+.+++.+++.+++.+.......-...++...-...-...+..+..||.++.+.+.....
T Consensus       114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~  193 (522)
T PF05701_consen  114 WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKL  193 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777777777777788888888888888888887777777888888888888888888888888888888776544


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037          96 ERLDLLKHLKFI----SQETAELENNNHSLDGEMKSCKNLL  132 (224)
Q Consensus        96 E~~~Lle~~~~l----~~e~~~lE~r~~~lE~e~nel~le~  132 (224)
                      ...+-.++...+    ......|+..+...+..+..++.++
T Consensus       194 a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~  234 (522)
T PF05701_consen  194 AHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL  234 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322222211    2444566666666666666665555

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0250|consensus

Probab=98.10  E-value=0.0047  Score=63.62  Aligned_cols=60  Identities=17%  Similarity=0.250  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037         152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD  211 (224)
Q Consensus       152 ~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~  211 (224)
                      .+..+..+++.+...++.|..++.+++.+-.....++...+.....+..+++.....|..
T Consensus       402 k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~  461 (1074)
T KOG0250|consen  402 KLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKD  461 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333334444444444444444444433

>KOG0996|consensus

Probab=98.04  E-value=0.0039  Score=64.58  Aligned_cols=192  Identities=16%  Similarity=0.210  Sum_probs=122.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037          14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK   93 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k   93 (224)
                      |.|-+-+.-|..+++..+..++++.+........+..+..++..|...+...+.++++..   .++..+-..+.+.+..+
T Consensus       408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~---~~l~~~t~~~~~e~~~~  484 (1293)
T KOG0996|consen  408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL---DSLKQETEGIREEIEKL  484 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhHHHHHHH
Confidence            334444444444444455555555555555555555555555555555555544444433   33444445566666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037          94 ESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQ  173 (224)
Q Consensus        94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~E  173 (224)
                      +.+...++.++-.++++++..++.+..+-..-+.......+++.+.......+.+....+.+.+..|..+.....+.+.+
T Consensus       485 ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~  564 (1293)
T KOG0996|consen  485 EKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKE  564 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            77777778888888888888888777777777777766677777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         174 VQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQ  208 (224)
Q Consensus       174 L~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~q  208 (224)
                      |..++.+-..+...+..+|.....+.++....+.+
T Consensus       565 l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~  599 (1293)
T KOG0996|consen  565 LPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR  599 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            77777766666666666666666666655554433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=98.02  E-value=0.0099  Score=58.57  Aligned_cols=193  Identities=15%  Similarity=0.233  Sum_probs=159.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy5037          11 REAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ----HYCCEVQRI   86 (224)
Q Consensus        11 ~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~----~~~~E~~rl   86 (224)
                      .+..-..+|+..|..||+.+......+..++..+...+..+..+...........+.++. ++.+..    +-..-|.+|
T Consensus       321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL  399 (594)
T PF05667_consen  321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKL  399 (594)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHH
Confidence            445567899999999999999999999999999999999999999999999988888877 444443    345668999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037          87 EEILSKKESERLDLLKHLKFIS----QETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE  162 (224)
Q Consensus        87 E~~i~~kE~E~~~Lle~~~~l~----~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~  162 (224)
                      ++.+..-...+..|..+....+    .++..|.....+.+++.....-++..++..+..+..+|...+..+..+...+..
T Consensus       400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~  479 (594)
T PF05667_consen  400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK  479 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999887777655    455677888888888888877777888888989998888888888888887765


Q ss_pred             H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         163 L---------SHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE  204 (224)
Q Consensus       163 l---------~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~  204 (224)
                      +         +.++-++-.-++..+.+..++..|...+......+.+++++
T Consensus       480 ~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R  530 (594)
T PF05667_consen  480 LPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR  530 (594)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5         67788888999999999999999999888888877766554

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.02  E-value=0.0033  Score=55.21  Aligned_cols=160  Identities=20%  Similarity=0.271  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELE  115 (224)
Q Consensus        36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE  115 (224)
                      .+..++.++.-.+.........+..+++.....+.+++..+.++..+|.+++..|......+.........         
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~---------   84 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA---------   84 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            33344444444444444444444444444455555555555555555555544444433333332222211         


Q ss_pred             hhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         116 NNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL  195 (224)
Q Consensus       116 ~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~  195 (224)
                         -.-.-+++.+..+...+..+..+++.+|.+....++.++.++..+..++..++..+..++.   .+...+..+++..
T Consensus        85 ---v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~---~~e~e~~~i~e~~  158 (239)
T COG1579          85 ---VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA---RLEEEVAEIREEG  158 (239)
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence               1223345666666677788888888888888888888888888888888888877766554   4555555555555


Q ss_pred             HHHHHHHHHHHHHHh
Q psy5037         196 DTMLRQKEELRLQLA  210 (224)
Q Consensus       196 ~kld~~~e~l~~qL~  210 (224)
                      -.+.+....|...++
T Consensus       159 ~~~~~~~~~L~~~l~  173 (239)
T COG1579         159 QELSSKREELKEKLD  173 (239)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            555555555554443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.99  E-value=0.011  Score=53.19  Aligned_cols=176  Identities=14%  Similarity=0.232  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------
Q psy5037          34 RNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD--------------   99 (224)
Q Consensus        34 r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~--------------   99 (224)
                      -+.+.+-+..+...|..++.++..|..+|+.-..-.+-|+.++++|.+.++.+-...+.--.-..+              
T Consensus        51 eE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~  130 (305)
T PF14915_consen   51 EETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVR  130 (305)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHH
Confidence            355667777888899999999999999999999999999999999999988875554432211111              


Q ss_pred             -----------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-------hHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037         100 -----------LLKHLKFISQETAELENNNHSLDGEMKSCKNLL-------AESEKKVMKLEALVQDKDCSIKSLEAKLE  161 (224)
Q Consensus       100 -----------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-------~~~~~ri~~le~~I~e~~~~i~~~e~qL~  161 (224)
                                 |.+....|+..+...|+++.+++.++.-.+-.+       ++++.-.....-+|.+.+.....-+.+++
T Consensus       131 lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~  210 (305)
T PF14915_consen  131 LQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN  210 (305)
T ss_pred             HHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence                       444445555555555555555555444433333       33444444444444444444445556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL  209 (224)
Q Consensus       162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL  209 (224)
                      .-......+++.|.+++.+.-=|...|..+...-+-.+..+-.++.+.
T Consensus       211 k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f  258 (305)
T PF14915_consen  211 KYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF  258 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            666777777888888888887777777777766665554444444333

>KOG4674|consensus

Probab=97.93  E-value=0.013  Score=63.40  Aligned_cols=152  Identities=18%  Similarity=0.295  Sum_probs=103.2

Q ss_pred             HHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037          43 RLQTELYDMN---QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH  119 (224)
Q Consensus        43 rlq~dL~~~~---~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~  119 (224)
                      -+......+.   .-|..|..+.+.....+.+|...+..+..++..+...+..+..++.........+..+..+|=.|++
T Consensus      1216 ~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q 1295 (1822)
T KOG4674|consen 1216 EILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ 1295 (1822)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444   7788899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhhh-hhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         120 SLDGEMKSC-KNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELS-----------HVTAQLETQVQCCQEEKYRLGEE  187 (224)
Q Consensus       120 ~lE~e~nel-~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~-----------~~~~~lE~EL~~lk~er~~l~~d  187 (224)
                      ++-...... .-+...+...|..|+.++...+..|.++...+..++           .....+..++.++..-...+.+.
T Consensus      1296 ~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~ 1375 (1822)
T KOG4674|consen 1296 DLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAA 1375 (1822)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887661111 111233344555555555555555555555555555           44444444444444444444444


Q ss_pred             HHHHHHH
Q psy5037         188 LAGCQET  194 (224)
Q Consensus       188 L~~~re~  194 (224)
                      +......
T Consensus      1376 ~~e~~~q 1382 (1822)
T KOG4674|consen 1376 LSEKNAQ 1382 (1822)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.91  E-value=0.02  Score=56.02  Aligned_cols=202  Identities=14%  Similarity=0.147  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          16 ATTEIDRFKYELNN------------LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEV   83 (224)
Q Consensus        16 ~~~e~~~lr~ql~~------------lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~   83 (224)
                      .+.+|..|+.++..            +....+.+...+..+-+.|+.-..-...+.........-+..+....+.+..++
T Consensus       254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei  333 (569)
T PRK04778        254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI  333 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666554            233344444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHH----------HhhHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037          84 QRIEEI----------LSKKESERLDLLKHLKFISQ-------ETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALV  146 (224)
Q Consensus        84 ~rlE~~----------i~~kE~E~~~Lle~~~~l~~-------e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I  146 (224)
                      .++...          ....+.++..+...|..+..       ..+.+...+..+...++.+..+...+.+.+.++....
T Consensus       334 ~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E  413 (569)
T PRK04778        334 DRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE  413 (569)
T ss_pred             HHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333          22222222222222222222       2233344444444444444444444455555555555


Q ss_pred             HhHHhhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037         147 QDKDCSIKSLEAKLEELSHVTAQ----------------LETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA  210 (224)
Q Consensus       147 ~e~~~~i~~~e~qL~~l~~~~~~----------------lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~  210 (224)
                      .++...+..+...+......+..                +..++..+..+....--++.++..........++.+..+..
T Consensus       414 ~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~  493 (569)
T PRK04778        414 LEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETE  493 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555544433322                24444555554444444455555555555555555555555


Q ss_pred             chHHHHH
Q psy5037         211 DTENYKT  217 (224)
Q Consensus       211 ~~~~~~~  217 (224)
                      ++.....
T Consensus       494 dL~~~a~  500 (569)
T PRK04778        494 ELVENAT  500 (569)
T ss_pred             HHHHHHH
Confidence            5544443

>KOG0964|consensus

Probab=97.90  E-value=0.015  Score=59.53  Aligned_cols=48  Identities=13%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037          81 CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC  128 (224)
Q Consensus        81 ~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel  128 (224)
                      ..+..+++.|..+..|...+.-.|.++..+-.++-.++..++.....+
T Consensus       328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l  375 (1200)
T KOG0964|consen  328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL  375 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777777777777777777777666654443

>KOG0933|consensus

Probab=97.89  E-value=0.026  Score=58.00  Aligned_cols=208  Identities=17%  Similarity=0.196  Sum_probs=146.6

Q ss_pred             HHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------------
Q psy5037          12 EAKLATTEIDRFKYELNN-----LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKL------------   74 (224)
Q Consensus        12 ~~~~~~~e~~~lr~ql~~-----lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~------------   74 (224)
                      |-....++++.|+|-.-+     +...+..+..++....+.+..+.........+|+..+.++.+|..            
T Consensus       219 E~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~  298 (1174)
T KOG0933|consen  219 EYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKA  298 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence            445667788888887665     667778888888888888888888888888888888888888777            


Q ss_pred             ---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-------hhhhH------------
Q psy5037          75 ---QLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS-------CKNLL------------  132 (224)
Q Consensus        75 ---~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ne-------l~le~------------  132 (224)
                         ++.+...+|.+.+..+.-+...+....+..+.++..+...+..+..-+.+...       ++-+.            
T Consensus       299 L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~  378 (1174)
T KOG0933|consen  299 LEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEE  378 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence               45566667777777777777766666666666666666555444444333333       22211            


Q ss_pred             ----------------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 ----------------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD  196 (224)
Q Consensus       133 ----------------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~  196 (224)
                                      -++...+.+....+.+....|+.....+.-++..+...+.++.....+.......+......|+
T Consensus       379 ~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve  458 (1174)
T KOG0933|consen  379 LVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVE  458 (1174)
T ss_pred             HHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence                            2246666777777777777777778888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHH---HHhchHHHHHhh
Q psy5037         197 TMLRQKEELRL---QLADTENYKTKE  219 (224)
Q Consensus       197 kld~~~e~l~~---qL~~~~~~~~~l  219 (224)
                      ++..+...+.-   +..++...+.+|
T Consensus       459 ~l~~~l~~l~~~~~~~e~l~q~~~~l  484 (1174)
T KOG0933|consen  459 KLKKRLQSLGYKIGQEEALKQRRAKL  484 (1174)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHH
Confidence            88877777663   333444444444

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.88  E-value=0.018  Score=51.90  Aligned_cols=177  Identities=19%  Similarity=0.265  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Q psy5037          22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS----------   91 (224)
Q Consensus        22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~----------   91 (224)
                      -|+.+++.++..|+++...++.+.............+..++.++....+++-..++....++..+...++          
T Consensus        31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~  110 (294)
T COG1340          31 ELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIK  110 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHH
Confidence            3445555555566666666665555555555555555555555555555555544444444444433333          


Q ss_pred             hHHHHHHH-----------------HHHHHHHHHHHHHHHHhhh------hhhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Q psy5037          92 KKESERLD-----------------LLKHLKFISQETAELENNN------HSLDGEMKSCKNLLAESEKKVMKLEALVQD  148 (224)
Q Consensus        92 ~kE~E~~~-----------------Lle~~~~l~~e~~~lE~r~------~~lE~e~nel~le~~~~~~ri~~le~~I~e  148 (224)
                      .++.++..                 +-..+..|+..+..|...+      ..+-+++-.++.....+.++|..+-.+++.
T Consensus       111 ~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe  190 (294)
T COG1340         111 SLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQE  190 (294)
T ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444433                 5555555666666555322      222233344444444444455444444444


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM  198 (224)
Q Consensus       149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kl  198 (224)
                      +-..+-.+=..+.++++..-.+-.++-.+......+...+..+....-.+
T Consensus       191 ~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~  240 (294)
T COG1340         191 YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL  240 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            44444444344444444444444444333333333333333333333333

>KOG0977|consensus

Probab=97.82  E-value=0.02  Score=55.61  Aligned_cols=150  Identities=17%  Similarity=0.249  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ--------HYCCEVQRIEEILSKKESERLDLL  101 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~--------~~~~E~~rlE~~i~~kE~E~~~Ll  101 (224)
                      ++..+.---+++..|-+.|+.....+.-|+.+=..+..++..++.-++        -|..|+..+...|+.-.+++..+.
T Consensus        33 ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e  112 (546)
T KOG0977|consen   33 IRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLE  112 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555555555555555555555555555555443        245566666666666666666666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         102 KHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       102 e~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      -.+..+..++..+..++..+.......+..+-....+++.++.++.-....|..++..+..++.....|..+|..++.
T Consensus       113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            666666666666666666666665555555555555555555555555555555555555555555555555444443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.79  E-value=0.058  Score=55.12  Aligned_cols=17  Identities=18%  Similarity=0.425  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5037          19 EIDRFKYELNNLELERN   35 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~   35 (224)
                      +|..+..++..+...+.
T Consensus       477 ~i~~l~~~i~~l~~~~~  493 (895)
T PRK01156        477 KKSRLEEKIREIEIEVK  493 (895)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334344433333333

>KOG0933|consensus

Probab=97.79  E-value=0.035  Score=57.09  Aligned_cols=167  Identities=19%  Similarity=0.214  Sum_probs=121.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037          45 QTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK----ESERLDLLKHLKFISQETAELENNNHS  120 (224)
Q Consensus        45 q~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k----E~E~~~Lle~~~~l~~e~~~lE~r~~~  120 (224)
                      ++..-....++..+...+++++.++.+...-+......+..+|..+..-    +++..+|...+..+...++.-...+..
T Consensus       733 ~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek  812 (1174)
T KOG0933|consen  733 QNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEK  812 (1174)
T ss_pred             cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666677777777788888777777778888887777777654    444455888888777777777777777


Q ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLR  200 (224)
Q Consensus       121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~  200 (224)
                      .+.+...+.++.+.+...+.+++....++...|.+|.+++..+...+...+.++..++.+......-+...-.....+-.
T Consensus       813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~  892 (1174)
T KOG0933|consen  813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT  892 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence            77777788888888888888888888888888888888888888888888888877777776666666555555544444


Q ss_pred             HHHHHHHHHhc
Q psy5037         201 QKEELRLQLAD  211 (224)
Q Consensus       201 ~~e~l~~qL~~  211 (224)
                      ..+.+......
T Consensus       893 ~~e~~~~e~~~  903 (1174)
T KOG0933|consen  893 SQEKCLSEKSD  903 (1174)
T ss_pred             HHHHHHHHhhc
Confidence            44444444443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.74  E-value=0.017  Score=49.32  Aligned_cols=169  Identities=21%  Similarity=0.275  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQT-------ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS   91 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~-------dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~   91 (224)
                      -|..|+.+|..+.....++..||+-|..       .|..+.+....+-.-|..-..++..|+..+..+......++..+.
T Consensus        13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk   92 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK   92 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777777777777777764432       233333333444444444444444444444444444444444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy5037          92 KKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK-NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQL  170 (224)
Q Consensus        92 ~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~-le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~l  170 (224)
                      .++.++..+.+.+..+..              -+..-. .+...+..++..+...+.+....|..++.++.-...   .+
T Consensus        93 ~~~~el~k~~~~l~~L~~--------------L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k---~~  155 (194)
T PF15619_consen   93 DKDEELLKTKDELKHLKK--------------LSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENK---SF  155 (194)
T ss_pred             HHHHHHHHHHHHHHHHHH--------------HHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HH
Confidence            444444443333333222              111111 113444555555555555555555555554443332   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         171 ETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE  204 (224)
Q Consensus       171 E~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~  204 (224)
                      -.+|.........+...+..+...|..|...+..
T Consensus       156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555555554443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.74  E-value=0.011  Score=47.95  Aligned_cols=118  Identities=18%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh---HhHHHHHHHHHHH
Q psy5037          68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNL---LAESEKKVMKLEA  144 (224)
Q Consensus        68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le---~~~~~~ri~~le~  144 (224)
                      +.++.-.....+.+.+..++.....++.++..|......+..+++.++.++..+...+...-..   .+++..||..++.
T Consensus         8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe   87 (143)
T PF12718_consen    8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE   87 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence            3333333334444444444444444444444444444444444444444444333332222111   1234444444444


Q ss_pred             HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG  185 (224)
Q Consensus       145 ~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~  185 (224)
                      ++......+......|.........++..++.+..++....
T Consensus        88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E  128 (143)
T PF12718_consen   88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE  128 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence            44444444444444444444444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK01156 chromosome segregation protein; Provisional

Probab=97.73  E-value=0.073  Score=54.40  Aligned_cols=26  Identities=15%  Similarity=0.259  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037         188 LAGCQETLDTMLRQKEELRLQLADTE  213 (224)
Q Consensus       188 L~~~re~~~kld~~~e~l~~qL~~~~  213 (224)
                      +..+.....++...+..+...++.+.
T Consensus       418 ~~~l~~~i~~l~~~i~~l~~~~~el~  443 (895)
T PRK01156        418 LQDISSKVSSLNQRIRALRENLDELS  443 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444433

>KOG0964|consensus

Probab=97.72  E-value=0.066  Score=55.02  Aligned_cols=163  Identities=15%  Similarity=0.219  Sum_probs=134.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------HHHHHHHHHHHHHHhh
Q psy5037          51 MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL-------------KHLKFISQETAELENN  117 (224)
Q Consensus        51 ~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll-------------e~~~~l~~e~~~lE~r  117 (224)
                      ....++.+..+|.+...++..++-...+++.+-.++...|...++...+|.             +.=.-++.++..+-+-
T Consensus       326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~  405 (1200)
T KOG0964|consen  326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRG  405 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHH
Confidence            445667888899999999999999999999999999999999999888854             3334577888888888


Q ss_pred             hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         118 NHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDT  197 (224)
Q Consensus       118 ~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~k  197 (224)
                      +.+.-...+-+..++.+++......-.+|..+...|.+...+++.+......+..++..+...|-.+=.+=..++.....
T Consensus       406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~  485 (1200)
T KOG0964|consen  406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIAN  485 (1200)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhchH
Q psy5037         198 MLRQKEELRLQLADTE  213 (224)
Q Consensus       198 ld~~~e~l~~qL~~~~  213 (224)
                      +...+...+..|.+..
T Consensus       486 ~~~dl~~~~~~L~~~~  501 (1200)
T KOG0964|consen  486 LEEDLSRAEKNLRATM  501 (1200)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8888877777776543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.69  E-value=0.066  Score=57.92  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037          21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT   67 (224)
Q Consensus        21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~   67 (224)
                      ...+.....+.+........+.++.+.+..+......|..+++....
T Consensus       289 ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k  335 (1486)
T PRK04863        289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD  335 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444433

>PRK09039 hypothetical protein; Validated

Probab=97.68  E-value=0.018  Score=53.06  Aligned_cols=45  Identities=11%  Similarity=0.155  Sum_probs=19.1

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      ..++..|+.|+.++...+.+|.+.+.+..+....+..+...|..+
T Consensus       140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444333

>KOG0977|consensus

Probab=97.67  E-value=0.024  Score=55.13  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDM   51 (224)
Q Consensus        16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~   51 (224)
                      .+.|+.++|+-|+.+.+.+..+..++.++..++..+
T Consensus        90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~el  125 (546)
T KOG0977|consen   90 YEAELATARKLLDETARERAKLEIEITKLREELKEL  125 (546)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            344444445444444444444444444444444443

>PRK09039 hypothetical protein; Validated

Probab=97.61  E-value=0.03  Score=51.63  Aligned_cols=20  Identities=20%  Similarity=0.209  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNR   36 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~   36 (224)
                      +++|+.+..+|+.+...+.+
T Consensus        45 s~~i~~~~~eL~~L~~qIa~   64 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAE   64 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHH
Confidence            34455555555555444444

>KOG0976|consensus

Probab=97.60  E-value=0.1  Score=52.77  Aligned_cols=118  Identities=17%  Similarity=0.283  Sum_probs=86.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037          15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE   94 (224)
Q Consensus        15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE   94 (224)
                      -.-++...+|+-..-+....-....+++-||..+.+...+.+.++.-|..++..+.+-+.++....++.-.++..++.+-
T Consensus        82 vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~  161 (1265)
T KOG0976|consen   82 VSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKA  161 (1265)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence            34455566666666677777777888888888888888888888888888888888888888888888888888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037          95 SERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL  132 (224)
Q Consensus        95 ~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~  132 (224)
                      .+|--..+.++.-...+.+++..+..+-+++|+....+
T Consensus       162 ~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~l  199 (1265)
T KOG0976|consen  162 HDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKAL  199 (1265)
T ss_pred             HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            77777666666666666666666666666666655544

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.58  E-value=0.055  Score=48.88  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037          22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL  101 (224)
Q Consensus        22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll  101 (224)
                      -|+.-++.+...++.+.++++.+-..-+........+...+.....+.+++=.+++.|...-..+-+.+..+=++..++.
T Consensus        17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~   96 (294)
T COG1340          17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK   96 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666777777777777777777777777766666666666666666666666666665555555555555555444


Q ss_pred             HHHH
Q psy5037         102 KHLK  105 (224)
Q Consensus       102 e~~~  105 (224)
                      ....
T Consensus        97 e~~~  100 (294)
T COG1340          97 EKRN  100 (294)
T ss_pred             HHhh
Confidence            4333

>KOG4674|consensus

Probab=97.58  E-value=0.11  Score=56.65  Aligned_cols=112  Identities=23%  Similarity=0.182  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----HHH
Q psy5037          94 ESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV----TAQ  169 (224)
Q Consensus        94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~----~~~  169 (224)
                      ..++..|.+++.+++.-...++.+....-+...+++.....+...+.-+...+.-....+.+.-.++..++..    +..
T Consensus       142 ~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~  221 (1822)
T KOG4674|consen  142 ESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQ  221 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            3333334444444444444444444433333333333333333333333333333333333333333333333    333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         170 LETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL  205 (224)
Q Consensus       170 lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l  205 (224)
                      |+..|.+++.....+...+..++.....|...++.+
T Consensus       222 L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~  257 (1822)
T KOG4674|consen  222 LEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESL  257 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444433333333333333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.55  E-value=0.022  Score=46.22  Aligned_cols=98  Identities=27%  Similarity=0.329  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037          27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF  106 (224)
Q Consensus        27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~  106 (224)
                      |..++...+.+...|-.+..+|+.+......+...-+.+.+++..|+.++..+..+...++..+...-.++..|....+.
T Consensus        12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~   91 (140)
T PF10473_consen   12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK   91 (140)
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555556666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhhhhhhhhh
Q psy5037         107 ISQETAELENNNHSLDGE  124 (224)
Q Consensus       107 l~~e~~~lE~r~~~lE~e  124 (224)
                      ....+..||....++..-
T Consensus        92 ~q~kv~eLE~~~~~~~~~  109 (140)
T PF10473_consen   92 KQEKVSELESLNSSLENL  109 (140)
T ss_pred             HHHHHHHHHHHhHHHHHH
Confidence            666666666555444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.51  E-value=0.13  Score=55.69  Aligned_cols=13  Identities=8%  Similarity=0.151  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q psy5037          35 NRAQSEVRRLQTE   47 (224)
Q Consensus        35 ~~a~~E~~rlq~d   47 (224)
                      .++...+..|+.+
T Consensus       317 ~ELe~rL~kLEkQ  329 (1486)
T PRK04863        317 AELNEAESDLEQD  329 (1486)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.48  E-value=0.12  Score=50.51  Aligned_cols=200  Identities=15%  Similarity=0.177  Sum_probs=149.0

Q ss_pred             HHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHH
Q psy5037          14 KLATTEIDRFKYELNN-------LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTE----------AEDVKLQL   76 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~-------lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~e----------leeLk~~~   76 (224)
                      +.+...+..+..++|+       --..+..+.+...++...|..+...+..+..+|+.+...          ...+..++
T Consensus       278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL  357 (569)
T PRK04778        278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQL  357 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHH
Confidence            3445555555556655       345566777888889999999999999999999988888          88888888


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHH--
Q psy5037          77 QHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK--  154 (224)
Q Consensus        77 ~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~--  154 (224)
                      +.+...+..+...+.........+.+++..+...+..++.....+...+++++..-..+++++..+...+......+.  
T Consensus       358 ~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~  437 (569)
T PRK04778        358 ESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS  437 (569)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            888888888888888888888888999999999998888888888888888888888888888888887777665443  


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037         155 -------SLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE  213 (224)
Q Consensus       155 -------~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~  213 (224)
                             .|-..+......+..+...|....=--..+..++..+....+.+..+.+.|......+.
T Consensus       438 ~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE  503 (569)
T PRK04778        438 NLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTE  503 (569)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   46777777778888888877764434444444666666666666666665554444433

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.46  E-value=0.056  Score=46.11  Aligned_cols=171  Identities=17%  Similarity=0.228  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5037          39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN  118 (224)
Q Consensus        39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~  118 (224)
                      -.|..|++.+.++...++.+..+-..+..--.--...+..|.+-=+.+-..|.....|+..|..+++........++.++
T Consensus        12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl   91 (194)
T PF15619_consen   12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL   91 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555444444444444444556677777777777888888899999999999999999999999


Q ss_pred             hhhhhhhhhhhhhHhHHHHH--------HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         119 HSLDGEMKSCKNLLAESEKK--------VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAG  190 (224)
Q Consensus       119 ~~lE~e~nel~le~~~~~~r--------i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~  190 (224)
                      ...++++-..+-.+..+..=        -..|..+++.....+..-+..|..|.+.+.-   .-...+.+-..-..-..+
T Consensus        92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL---~~k~~~rql~~e~kK~~~  168 (194)
T PF15619_consen   92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL---ENKSFRRQLASEKKKHKE  168 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHH
Confidence            99988888776666333221        2444444555554444444444444442221   122223333334444556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhch
Q psy5037         191 CQETLDTMLRQKEELRLQLADT  212 (224)
Q Consensus       191 ~re~~~kld~~~e~l~~qL~~~  212 (224)
                      +...|..+...+..|+..|-.+
T Consensus       169 ~~~~~~~l~~ei~~L~~klkEK  190 (194)
T PF15619_consen  169 AQEEVKSLQEEIQRLNQKLKEK  190 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666665443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.46  E-value=0.032  Score=55.99  Aligned_cols=190  Identities=18%  Similarity=0.133  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE   96 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E   96 (224)
                      --||.-|.+||-++.+.+..+...+.-.|..|+...+.....+.++..+-..+.-|..--.. . +..-..+    .++.
T Consensus       264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~-k-e~~~~~d----~~~~  337 (717)
T PF09730_consen  264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQED-K-EQQSAED----SEKE  337 (717)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-h-hhhhhhh----cccc
Confidence            36899999999999999999999999999999999998888888888887777777651100 0 0000000    0000


Q ss_pred             HHHH--HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          97 RLDL--LKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV  174 (224)
Q Consensus        97 ~~~L--le~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL  174 (224)
                      ....  -..|.---.....|+.++..+..++..++-++..+..+.+.+.....+-   ..-++..+..+...+..++...
T Consensus       338 ~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~e---k~~~~~e~q~L~ekl~~lek~~  414 (717)
T PF09730_consen  338 RDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQE---KDRLESEVQNLKEKLMSLEKSS  414 (717)
T ss_pred             cccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence            0000  0111111112344556666666666665555555555555555533332   2223333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037         175 QCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY  215 (224)
Q Consensus       175 ~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~  215 (224)
                      +.-++....|..+|..+...-....+.+...+-.|.++..-
T Consensus       415 re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEe  455 (717)
T PF09730_consen  415 REDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEE  455 (717)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0980|consensus

Probab=97.43  E-value=0.16  Score=51.73  Aligned_cols=146  Identities=16%  Similarity=0.196  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037          21 DRFKYELNNLELERNRAQSEV---RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER   97 (224)
Q Consensus        21 ~~lr~ql~~lr~~r~~a~~E~---~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~   97 (224)
                      ..||.++.++...+....+-+   .......-......+.+...+......-.+|..+..+..-.+.-.+..|..++.++
T Consensus       389 eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~  468 (980)
T KOG0980|consen  389 EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEEN  468 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            388888888888777777766   45555566666777788888888888888998888888888888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037          98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV  166 (224)
Q Consensus        98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~  166 (224)
                      ..|.+++..+.-+...|+.+.++...-+.+++.++..+..++..+...+..+....-..-.+++.+-+.
T Consensus       469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~  537 (980)
T KOG0980|consen  469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQ  537 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999988889888888777666555555555554443

>KOG0971|consensus

Probab=97.41  E-value=0.2  Score=51.39  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHH-------HHHhhhhhhhhhhhhhhhhH-----------------hHHHHHHHHHHHHHHhHHhhHHH
Q psy5037         100 LLKHLKFISQETA-------ELENNNHSLDGEMKSCKNLL-----------------AESEKKVMKLEALVQDKDCSIKS  155 (224)
Q Consensus       100 Lle~~~~l~~e~~-------~lE~r~~~lE~e~nel~le~-----------------~~~~~ri~~le~~I~e~~~~i~~  155 (224)
                      +-+.+.+.+.|+.       .|-.++.++++.+..++-+.                 ..+++||.-|++.|.+.++.-+-
T Consensus       401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~  480 (1243)
T KOG0971|consen  401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEM  480 (1243)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555554       34456666677777766665                 34588888888888888766554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         156 LEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL  205 (224)
Q Consensus       156 ~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l  205 (224)
                      -+.-++.-+.-+..|-+||..+++-+..+.....++.+-.+..|..+-++
T Consensus       481 ~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~Kf  530 (1243)
T KOG0971|consen  481 NEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKF  530 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            44445555566667777777777666666666666655555444444333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.40  E-value=3.5e-05  Score=78.49  Aligned_cols=205  Identities=20%  Similarity=0.257  Sum_probs=0.0

Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037           8 RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIE   87 (224)
Q Consensus         8 ~~~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE   87 (224)
                      .+.+++...++++..|+.+|+.+....+.+..+|..|+.+|.++..........+.+++..+..|..++..+...+..++
T Consensus       402 ~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E  481 (859)
T PF01576_consen  402 AAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAE  481 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678889999999999999998888888888888888888877655554433333333333333333333333333332


Q ss_pred             HHHh-------hHHHHHHH----------------------HHHHHHHHHHHHHH-------HHhhhhhhhhhhhhhhhh
Q psy5037          88 EILS-------KKESERLD----------------------LLKHLKFISQETAE-------LENNNHSLDGEMKSCKNL  131 (224)
Q Consensus        88 ~~i~-------~kE~E~~~----------------------Lle~~~~l~~e~~~-------lE~r~~~lE~e~nel~le  131 (224)
                      +.+.       +++-++..                      +..+|+.+...++.       +-.--..++++++++...
T Consensus       482 ~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~  561 (859)
T PF01576_consen  482 DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQ  561 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222       22222222                      34444444444421       111123356666666555


Q ss_pred             HhHH-------HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         132 LAES-------EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE  204 (224)
Q Consensus       132 ~~~~-------~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~  204 (224)
                      +..+       ...+..+...|.++...++.-....+.+...+..++..+..|+.+...+..++..+...+-.+......
T Consensus       562 ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e  641 (859)
T PF01576_consen  562 LDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDE  641 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5333       222233333333333333333333333444444555555555555555555555555555555555554


Q ss_pred             HHHHHhch
Q psy5037         205 LRLQLADT  212 (224)
Q Consensus       205 l~~qL~~~  212 (224)
                      +..+++.+
T Consensus       642 ~~~~~~~l  649 (859)
T PF01576_consen  642 LQERLNEL  649 (859)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            44444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.39  E-value=0.052  Score=44.08  Aligned_cols=93  Identities=19%  Similarity=0.273  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELE  115 (224)
Q Consensus        36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE  115 (224)
                      ....+..+.+..-+.+...+..+.++|+.++.....+..+......+|..+++.|.....++..|...+..++++-..|.
T Consensus         7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~   86 (140)
T PF10473_consen    7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD   86 (140)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666667777777777777777777777777777778777777777777777777777777776666665


Q ss_pred             hhhhhhhhhhhhh
Q psy5037         116 NNNHSLDGEMKSC  128 (224)
Q Consensus       116 ~r~~~lE~e~nel  128 (224)
                      .-.+...+.+.++
T Consensus        87 k~lq~~q~kv~eL   99 (140)
T PF10473_consen   87 KELQKKQEKVSEL   99 (140)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555554444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.30  E-value=0.087  Score=44.84  Aligned_cols=123  Identities=17%  Similarity=0.181  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH
Q psy5037          55 NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAE  134 (224)
Q Consensus        55 ~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~  134 (224)
                      ...+..+++++...+..++.+-.+..+.-.-++.....+..++..|.++-..+..+.+-+-.++.+|-.....++..+..
T Consensus        62 aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~  141 (193)
T PF14662_consen   62 AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE  141 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666667777777777776666666666522


Q ss_pred             ---H----HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 ---S----EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       135 ---~----~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                         +    ..-+.+-...|.++...|..|..-...++..++.||+.|.+.
T Consensus       142 ~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  142 FESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               1    333344455666677777777777777777777777766554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.28  E-value=6.1e-05  Score=76.81  Aligned_cols=201  Identities=20%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          15 LATTEIDRFKYELNNLELERNRAQSEVR--------RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI   86 (224)
Q Consensus        15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~--------rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl   86 (224)
                      ..+.|+..||++|.......+....+++        -|...++.+..-...+.+.-..+..++++|...+..+..--..+
T Consensus        99 krE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~  178 (859)
T PF01576_consen   99 KREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEA  178 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3445677777777653333333333322        22222333222222233333333333333333333333333333


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037          87 EEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV  166 (224)
Q Consensus        87 E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~  166 (224)
                      +..+...+..+.++...+......+..+......+.++++++...++.+...+..+..........+..+..++..-+..
T Consensus       179 Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~  258 (859)
T PF01576_consen  179 EKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRA  258 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhh
Confidence            33444444444445555555555555555555555555555555555555555555555555556666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037         167 TAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY  215 (224)
Q Consensus       167 ~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~  215 (224)
                      -..|...|+.+..+...+...+..-..-...+...+..++.++.....+
T Consensus       259 k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K  307 (859)
T PF01576_consen  259 KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK  307 (859)
T ss_dssp             -------------------------------------------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence            6666666666666555555555555555555555555555555544433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.26  E-value=0.13  Score=52.18  Aligned_cols=165  Identities=17%  Similarity=0.130  Sum_probs=109.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------------------HHHHHHHHHHHH
Q psy5037          14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQEL-------------------EASRTEAEDVKL   74 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~el-------------------e~~e~eleeLk~   74 (224)
                      ..++.|+.+|++||+++...+..+...+..|-.-|-..-..+..+..+-                   -+++..+.++..
T Consensus        20 ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~   99 (769)
T PF05911_consen   20 EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSK   99 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999998766665555555544444444333222222111                   134456667777


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHH--HHHHHHHHHHhHHhh
Q psy5037          75 QLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEK--KVMKLEALVQDKDCS  152 (224)
Q Consensus        75 ~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~--ri~~le~~I~e~~~~  152 (224)
                      ++.....|-..+-..+..++.-+.+|.+.......++..+-.++..++-++++++-++..+..  .|...+++..  ..+
T Consensus       100 ~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~--~~~  177 (769)
T PF05911_consen  100 RLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYS--RRA  177 (769)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHH
Confidence            777777777778888888888889999999999999999999999999999999999855432  2333333332  222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         153 IKSLEAKLEELSHVTAQLETQVQCCQEE  180 (224)
Q Consensus       153 i~~~e~qL~~l~~~~~~lE~EL~~lk~e  180 (224)
                      .+....|=-+=-+.++.||.|.+.|+.=
T Consensus       178 ae~a~kqhle~vkkiakLEaEC~rLr~l  205 (769)
T PF05911_consen  178 AEAASKQHLESVKKIAKLEAECQRLRAL  205 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222333333345688888888887763

The function of this family is unknown.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.24  E-value=0.0059  Score=51.68  Aligned_cols=111  Identities=18%  Similarity=0.254  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037          18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER   97 (224)
Q Consensus        18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~   97 (224)
                      .-+.++-..+-.++.....+-+..+.+...|-.+...++.+..++......+..+...+..+..++..++..|..+.+-+
T Consensus        67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~  146 (194)
T PF08614_consen   67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN  146 (194)
T ss_dssp             -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666777778888888888888888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037          98 LDLLKHLKFISQETAELENNNHSLDGEMKSC  128 (224)
Q Consensus        98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel  128 (224)
                      ..|.+++..+.-+...+|.++..++.+...|
T Consensus       147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L  177 (194)
T PF08614_consen  147 EILQDELQALQLQLNMLEEKLRKLEEENREL  177 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997776

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0018|consensus

Probab=97.20  E-value=0.33  Score=50.50  Aligned_cols=115  Identities=13%  Similarity=0.124  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH---HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAE---SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC  176 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~---~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~  176 (224)
                      ....|..|..++...-  ...+++-....+-...+   ..++..+++.+|......+.....++..|...+..+...+..
T Consensus       364 ~~~ey~rlk~ea~~~~--~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e  441 (1141)
T KOG0018|consen  364 QVEEYERLKEEACKEA--LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEE  441 (1141)
T ss_pred             HHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566665554332  33333333333322222   256777888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy5037         177 CQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYK  216 (224)
Q Consensus       177 lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~  216 (224)
                      +..+-..+..++..+.+.-..+-..+..+..|+......+
T Consensus       442 ~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr  481 (1141)
T KOG0018|consen  442 LKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADR  481 (1141)
T ss_pred             HhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            8888888888888888888888887777777776655443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.13  E-value=0.5  Score=50.27  Aligned_cols=63  Identities=16%  Similarity=0.104  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcC
Q psy5037         159 KLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESA  221 (224)
Q Consensus       159 qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~  221 (224)
                      ++..+..++.........+......+...+..++..+++.......++.++..+.....++..
T Consensus       470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~  532 (1201)
T PF12128_consen  470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQR  532 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555555555555555666666666666666666666666666555555543

>KOG0971|consensus

Probab=97.08  E-value=0.22  Score=51.11  Aligned_cols=144  Identities=17%  Similarity=0.270  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------HHHHHH
Q psy5037          43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-----------------LLKHLK  105 (224)
Q Consensus        43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-----------------Lle~~~  105 (224)
                      ||.|-.+..+.+.+.+.++++.+..++.+|+.....+..+++-+|+.|...-..++.                 |.+...
T Consensus       386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVk  465 (1243)
T KOG0971|consen  386 RLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVK  465 (1243)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHH
Confidence            444444555677778888888888888888888888888888887777776655554                 666677


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhH--------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         106 FISQETAELENNNHSLDGEMKSCKNLL--------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       106 ~l~~e~~~lE~r~~~lE~e~nel~le~--------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      -|.+++.++|. +++++-.+.+...++        .-+..-+..+..++......+-.+...|-.++.-++.|-+.|+.+
T Consensus       466 lLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~  544 (1243)
T KOG0971|consen  466 LLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQEL  544 (1243)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766653 233333333322222        334455567778888888888888888888888899999888888


Q ss_pred             HHHHHHHHHH
Q psy5037         178 QEEKYRLGEE  187 (224)
Q Consensus       178 k~er~~l~~d  187 (224)
                      +++-.+...+
T Consensus       545 ~dq~~Sseee  554 (1243)
T KOG0971|consen  545 TDQQESSEEE  554 (1243)
T ss_pred             HhhhhhhHHH
Confidence            8866655443

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=97.06  E-value=0.062  Score=47.33  Aligned_cols=126  Identities=22%  Similarity=0.316  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHH
Q psy5037          63 EASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKL  142 (224)
Q Consensus        63 e~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~l  142 (224)
                      +..+.+..+|..++..+-.++.+....+...+.....|-++.+.+..+...|+.+...++.....+.............|
T Consensus         1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~L   80 (246)
T PF00769_consen    1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQL   80 (246)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999998888877776666667778


Q ss_pred             HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         143 EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL  188 (224)
Q Consensus       143 e~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL  188 (224)
                      ..++.++...|..+.............+..+|...+.........|
T Consensus        81 e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L  126 (246)
T PF00769_consen   81 EQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL  126 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888777777666555554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.06  E-value=0.63  Score=50.17  Aligned_cols=86  Identities=14%  Similarity=0.093  Sum_probs=45.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQH--NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS   91 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e--~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~   91 (224)
                      .-++.+|..|..+++.+...+..+......|......+-.+  .......+......+.....++......+........
T Consensus       745 ~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~  824 (1353)
T TIGR02680       745 AELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWK  824 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777777777777777777766666665444332  2233333444444444444444444444444444444


Q ss_pred             hHHHHHHH
Q psy5037          92 KKESERLD   99 (224)
Q Consensus        92 ~kE~E~~~   99 (224)
                      ........
T Consensus       825 ~a~~~l~~  832 (1353)
T TIGR02680       825 QARRELER  832 (1353)
T ss_pred             HHHHHHHH
Confidence            44444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0612|consensus

Probab=97.05  E-value=0.56  Score=49.46  Aligned_cols=173  Identities=14%  Similarity=0.158  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------
Q psy5037          37 AQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-----------------   99 (224)
Q Consensus        37 a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-----------------   99 (224)
                      +..++...+..++......+.+...+.++..++++++.........+.++..+-..++.-..+                 
T Consensus       492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e  571 (1317)
T KOG0612|consen  492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE  571 (1317)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence            445555555566666666666666666666666666666665555555555544444433332                 


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      +..+++.+.++...++.++..++..-..+-.+...+..-.....+.-.++-..+...+..++++........-++..+++
T Consensus       572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e  651 (1317)
T KOG0612|consen  572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE  651 (1317)
T ss_pred             hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence            33344444444445555555554432222222211222222222222333333333333344444444444444444444


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy5037         180 EKYRLGEELAGCQE--TLDTMLRQKEELRLQL  209 (224)
Q Consensus       180 er~~l~~dL~~~re--~~~kld~~~e~l~~qL  209 (224)
                      .+....+-++....  .-++++..+..+..++
T Consensus       652 l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~  683 (1317)
T KOG0612|consen  652 LKRENQERISDSEKEALEIKLERKLKMLQNEL  683 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333  4444444444444333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.05  E-value=0.00014  Score=72.60  Aligned_cols=196  Identities=20%  Similarity=0.264  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          23 FKYELNNLELERNRAQSEVRRLQTELYDMN-----------QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS   91 (224)
Q Consensus        23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~-----------~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~   91 (224)
                      |-.++..+...++.+..++..++..++...           .....+..+++.+..++..+...+.+|..++..++..|.
T Consensus       198 l~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~  277 (713)
T PF05622_consen  198 LEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEID  277 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444566666666677766666555533           233455666777777777777777778777778888887


Q ss_pred             hHHHHHHHHH---HHHHHHHHHHHHHHh---hhhhhhhhhhhhhhhH----------hHHHHHHHHHHHHHHhHHhhH--
Q psy5037          92 KKESERLDLL---KHLKFISQETAELEN---NNHSLDGEMKSCKNLL----------AESEKKVMKLEALVQDKDCSI--  153 (224)
Q Consensus        92 ~kE~E~~~Ll---e~~~~l~~e~~~lE~---r~~~lE~e~nel~le~----------~~~~~ri~~le~~I~e~~~~i--  153 (224)
                      .+..++.+|.   ..++.++.+++.|-.   ++..+++.+...+.-+          ..+++.+..+-..+..++...  
T Consensus       278 ~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~  357 (713)
T PF05622_consen  278 ELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKK  357 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777744   555566666665533   3334555555444433          333333333333333333322  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037         154 -KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTK  218 (224)
Q Consensus       154 -~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~  218 (224)
                       ..+..++..+++.+..|+..+.........+..++..+.+.+..+...++.+..+...+......
T Consensus       358 ~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ee  423 (713)
T PF05622_consen  358 ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEE  423 (713)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23555666677777777777777777777777777777777777777777776666665554443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0946|consensus

Probab=97.04  E-value=0.44  Score=48.42  Aligned_cols=208  Identities=13%  Similarity=0.112  Sum_probs=103.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy5037          14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ---------   84 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~---------   84 (224)
                      ++++.+...+-++.-..+.-+-...-++..++.+..++..++..+..++.....+...|+.+......++.         
T Consensus       646 ~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~  725 (970)
T KOG0946|consen  646 QLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDL  725 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhH
Confidence            34455555555555555555556666666666666666666666666666665555555555555555544         


Q ss_pred             -HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHH--------------------HHHHHH
Q psy5037          85 -RIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEK--------------------KVMKLE  143 (224)
Q Consensus        85 -rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~--------------------ri~~le  143 (224)
                       ..-+....++.++..++-++.++......+...+..-+..+-+++....++.+                    ..+...
T Consensus       726 ~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~  805 (970)
T KOG0946|consen  726 LQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEES  805 (970)
T ss_pred             HhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhh
Confidence             22222223333444444444444444443333332223332333222222211                    133334


Q ss_pred             HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcC
Q psy5037         144 ALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESA  221 (224)
Q Consensus       144 ~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~  221 (224)
                      .+.+++...+..++.++..+....+..-..+..+..--..+-....-+...|..+.........-+..+.+.+..+.|
T Consensus       806 ~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~  883 (970)
T KOG0946|consen  806 TRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEA  883 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHH
Confidence            445555555555666666555555555555555544444444555555555555555555555444444444444433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.00  E-value=0.35  Score=48.73  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037          22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL  101 (224)
Q Consensus        22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll  101 (224)
                      .|..+|..+......+..++.+.+.+.+++...+..+....+..+.+...|+.++..|...=.|+=.+.+.+|.|+-.|.
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ  110 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ  110 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            35556666666666667777777777777777777777788888888888888888888888888888999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHH
Q psy5037         102 KHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAK  159 (224)
Q Consensus       102 e~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~q  159 (224)
                      .+...|+.....+|           +++.++..+.+.+.-+..++.+...--.=.+.|
T Consensus       111 Kqvs~Lk~sQvefE-----------~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~q  157 (717)
T PF09730_consen  111 KQVSVLKQSQVEFE-----------GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQ  157 (717)
T ss_pred             HHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887766665           344444444455555544444444333333333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.97  E-value=0.35  Score=45.79  Aligned_cols=49  Identities=18%  Similarity=0.167  Sum_probs=22.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         151 CSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML  199 (224)
Q Consensus       151 ~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld  199 (224)
                      .....+...+.+..+.+..+..++..-+..-..|...-.+++..+-.+.
T Consensus       196 ~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         196 AQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444444444444444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.95  E-value=0.48  Score=47.09  Aligned_cols=110  Identities=18%  Similarity=0.263  Sum_probs=71.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHN----------------MTIQQELEASRTEAEDVKLQLQH   78 (224)
Q Consensus        15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~----------------~~l~~ele~~e~eleeLk~~~~~   78 (224)
                      ....-+.-|-.++.+++..+......|..|...|..+....                ..+..++..+..+++.|..+++.
T Consensus        26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa  105 (617)
T PF15070_consen   26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA  105 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555666677777777777777777777765332                36777777888888888888887


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037          79 YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE  124 (224)
Q Consensus        79 ~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e  124 (224)
                      .+.+...+..++..++.-+.+|...++.+.....+...-+..+.++
T Consensus       106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsd  151 (617)
T PF15070_consen  106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSD  151 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            7777777766666666666666666666666555444444444433

>KOG0018|consensus

Probab=96.93  E-value=0.66  Score=48.34  Aligned_cols=36  Identities=11%  Similarity=0.288  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037         183 RLGEELAGCQETLDTMLRQKEELRLQLADTENYKTK  218 (224)
Q Consensus       183 ~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~  218 (224)
                      ....++..++.....+-+.+..|..++.++....++
T Consensus       853 ~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~  888 (1141)
T KOG0018|consen  853 KKEDEINEVKKILRRLVKELTKLDKEITSIESKIER  888 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence            344444444444444444555555555544444433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.91  E-value=0.53  Score=46.80  Aligned_cols=133  Identities=15%  Similarity=0.206  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHH
Q psy5037          31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD---LLKHLKFI  107 (224)
Q Consensus        31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~---Lle~~~~l  107 (224)
                      ......+.+++..|...+......++.+.......+..+.+++..++.+.........++....+....   .+.+=..|
T Consensus        86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eL  165 (617)
T PF15070_consen   86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNREL  165 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHH
Confidence            334444555566666666665566666666666667777777777777776665555555555544444   44455666


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037         108 SQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEEL  163 (224)
Q Consensus       108 ~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l  163 (224)
                      ...+..+.+.+-.+-.+..++...+.+-..-+..|..++.+....+..+..++..+
T Consensus       166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K  221 (617)
T PF15070_consen  166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK  221 (617)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67777777777666666555555555555555566655555554444444444444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.89  E-value=0.2  Score=50.94  Aligned_cols=167  Identities=20%  Similarity=0.259  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037          41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS  120 (224)
Q Consensus        41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~  120 (224)
                      ...+..+++.+..+...+...+..+...++.++.+++..-.-+..+...+.....-...+-.++.....-...+++++..
T Consensus       591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~  670 (769)
T PF05911_consen  591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKD  670 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            33455555555555555555555555555555555555444444444444444444444444445555555555555555


Q ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHH
Q psy5037         121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC---QEE-KYRLGEELAGCQETLD  196 (224)
Q Consensus       121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l---k~e-r~~l~~dL~~~re~~~  196 (224)
                      ++.+++.       +..++..|+.+|..-..-..++....-++...+.....+....   ..+ +..-.-+|+++-....
T Consensus       671 ~e~E~~~-------l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLA  743 (769)
T PF05911_consen  671 LEAEAEE-------LQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLA  743 (769)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHH
Confidence            5555444       4677777777777766666666666666666555555433211   122 2222348889999999


Q ss_pred             HHHHHHHHHHHHHhchHH
Q psy5037         197 TMLRQKEELRLQLADTEN  214 (224)
Q Consensus       197 kld~~~e~l~~qL~~~~~  214 (224)
                      ..+.++-.|..||.++..
T Consensus       744 ECQeTI~sLGkQLksLa~  761 (769)
T PF05911_consen  744 ECQETIASLGKQLKSLAT  761 (769)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999988753

The function of this family is unknown.

>KOG1003|consensus

Probab=96.87  E-value=0.24  Score=42.34  Aligned_cols=174  Identities=17%  Similarity=0.170  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK-------KESERLDLLK  102 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~-------kE~E~~~Lle  102 (224)
                      +++++..+..+..+.+..+..+...+.....--.++.+...-|....+..-..|..++.-+..       -+....++--
T Consensus         9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar   88 (205)
T KOG1003|consen    9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR   88 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555555555555555444455555555544554444444444444443332       2334444555


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH-------HHHHHHH
Q psy5037         103 HLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA-------QLETQVQ  175 (224)
Q Consensus       103 ~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~-------~lE~EL~  175 (224)
                      .+-.+..++.+.+.+..-.++.+-.+--++.-+.+-..++...-..+......|+.+|-.++..+.       -++.-+.
T Consensus        89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVa  168 (205)
T KOG1003|consen   89 KLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVA  168 (205)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            555666667777766666666666665555445555555555555555555555555555554443       3455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         176 CCQEEKYRLGEELAGCQETLDTMLRQKE  203 (224)
Q Consensus       176 ~lk~er~~l~~dL~~~re~~~kld~~~e  203 (224)
                      .|..+++.+...+...+.....+...++
T Consensus       169 kLeke~DdlE~kl~~~k~ky~~~~~eLD  196 (205)
T KOG1003|consen  169 KLEKERDDLEEKLEEAKEKYEEAKKELD  196 (205)
T ss_pred             HHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence            6666666666666666655444433333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.86  E-value=0.35  Score=44.11  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD  196 (224)
Q Consensus       137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~  196 (224)
                      ..+..+..++..+...|......+..++.....+...+..+..++..+..++..+...+.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555555555555555554443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.85  E-value=0.32  Score=43.43  Aligned_cols=60  Identities=18%  Similarity=0.137  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQ  192 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~r  192 (224)
                      ..+......++..+........+++.++..|.....++..=+-.+..+......+..++.
T Consensus       158 ~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~  217 (265)
T COG3883         158 KSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE  217 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            444555555555555555555555555555555555555555555555555555544444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.84  E-value=0.89  Score=48.42  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         160 LEELSHVTAQLETQVQCCQEEKYRLGEE  187 (224)
Q Consensus       160 L~~l~~~~~~lE~EL~~lk~er~~l~~d  187 (224)
                      |..+...+..|+.+|+.....+..+...
T Consensus       773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY  800 (1201)
T PF12128_consen  773 IQQLKQEIEQLEKELKRIEERRAEVIEY  800 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3344444444444444444444444333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.62  E-value=0.37  Score=41.18  Aligned_cols=139  Identities=21%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE   96 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E   96 (224)
                      ..+|..|+.......+...++..+|.+|..-|..+..++..+...+........    .+....+.+..++..+..+.-+
T Consensus        33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~----~L~~~k~rl~~~ek~l~~Lk~e  108 (201)
T PF13851_consen   33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ----SLQNLKARLKELEKELKDLKWE  108 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455666666677777777777776666666666665554433    3344455555566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q psy5037          97 RLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSH  165 (224)
Q Consensus        97 ~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~  165 (224)
                      ...|..+|..+..+-+.|-.+...+=.++.-      -..-+..-|+..+......++..+.||.+.-.
T Consensus       109 ~evL~qr~~kle~ErdeL~~kf~~~i~evqQ------k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~  171 (201)
T PF13851_consen  109 HEVLEQRFEKLEQERDELYRKFESAIQEVQQ------KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA  171 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777776666544333222      23445566666666666666666666665544

>KOG4643|consensus

Probab=96.62  E-value=1.1  Score=46.58  Aligned_cols=116  Identities=16%  Similarity=0.226  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q psy5037          16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYC---------------   80 (224)
Q Consensus        16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~---------------   80 (224)
                      .+.++..++..+..++...++-...+.++...|+.+..++..+..++.+...+..-++.-+..+.               
T Consensus       175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke  254 (1195)
T KOG4643|consen  175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE  254 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence            34556666666666666666666666666666666666666666666655444333222111111               


Q ss_pred             --HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhhhhh
Q psy5037          81 --CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN--HSLDGEMKSCKNL  131 (224)
Q Consensus        81 --~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~--~~lE~e~nel~le  131 (224)
                        .+...+.+....+..-+.-|++.+.++.+++..+..+.  +.++++|--++-.
T Consensus       255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqk  309 (1195)
T KOG4643|consen  255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQK  309 (1195)
T ss_pred             hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHH
Confidence              12222455555555666668888888888888887777  5555555444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.61  E-value=0.81  Score=44.83  Aligned_cols=110  Identities=17%  Similarity=0.267  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhh---hhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEM---KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC  176 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~---nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~  176 (224)
                      +.++.+.+..+++++-.+++=-++++   ..+..++..+..+...+...|.++...-..+...+..+...+..++.+...
T Consensus       318 ~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~  397 (560)
T PF06160_consen  318 AKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEE  397 (560)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455554444443333222   222222334455555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         177 CQEEKYRLGEELAGCQETLDTMLRQKEELRLQL  209 (224)
Q Consensus       177 lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL  209 (224)
                      +.+....+..+-..+|+....+...+..+.+.+
T Consensus       398 ~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l  430 (560)
T PF06160_consen  398 INESLQSLRKDEKEAREKLQKLKQKLREIKRRL  430 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555554444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.57  E-value=0.58  Score=42.65  Aligned_cols=194  Identities=18%  Similarity=0.222  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy5037          16 ATTEIDRFKYELNN------LELER-NRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCE------   82 (224)
Q Consensus        16 ~~~e~~~lr~ql~~------lr~~r-~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E------   82 (224)
                      |--+|+-+-+-|..      +..++ ..+...|+.|....+.+..........+..+.+++.-=..-++-|...      
T Consensus        60 ty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~  139 (306)
T PF04849_consen   60 TYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEP  139 (306)
T ss_pred             chhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhccc
Confidence            34466666666664      22222 356667777777777777777777777777777765444444444411      


Q ss_pred             ----------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHH
Q psy5037          83 ----------------------VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVM  140 (224)
Q Consensus        83 ----------------------~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~  140 (224)
                                            +.-+-..+..++.|+..|..++..|..+...+|.+-+.+   ++.+-.++..+...|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia  216 (306)
T PF04849_consen  140 ESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIA  216 (306)
T ss_pred             ccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHH
Confidence                                  345566666777777777777777777777777777776   4445566778888999


Q ss_pred             HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037         141 KLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT  212 (224)
Q Consensus       141 ~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~  212 (224)
                      .|...++........+..+|+.|...+..+...++.+--+.+.+..-|..+++--..|.+.+..++-.....
T Consensus       217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~  288 (306)
T PF04849_consen  217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC  288 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888888887777766666555443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.55  E-value=0.74  Score=43.65  Aligned_cols=66  Identities=11%  Similarity=0.213  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS   91 (224)
Q Consensus        26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~   91 (224)
                      +|+++........+.+...++....+...+..++.+|....+.+-+....+......|+.+...|.
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~  104 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN  104 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.52  E-value=1.1  Score=45.27  Aligned_cols=94  Identities=17%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      +.+|.+.+..++.+.....+-=..|...|.-...-...+..+|..+..+.+.|+.+++..+.--..=...|..+|+...+
T Consensus       420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e  499 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE  499 (697)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444455555566666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAE  113 (224)
Q Consensus       100 Lle~~~~l~~e~~~  113 (224)
                      ...+-..+..++..
T Consensus       500 E~~~R~~lEkQL~e  513 (697)
T PF09726_consen  500 ERRQRASLEKQLQE  513 (697)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66665555555543

; GO: 0016021 integral to membrane

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.51  E-value=0.63  Score=42.40  Aligned_cols=179  Identities=19%  Similarity=0.172  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------H---
Q psy5037          41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-----------------L---  100 (224)
Q Consensus        41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-----------------L---  100 (224)
                      +.....||.-+..-.+.|-..=..+......|...+......|..+.-.+..+..-..-                 +   
T Consensus        71 LeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~  150 (306)
T PF04849_consen   71 LEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRN  150 (306)
T ss_pred             HHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccc
Confidence            33344555555544444444444445555555555555555555555555444433222                 1   


Q ss_pred             --------HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037         101 --------LKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET  172 (224)
Q Consensus       101 --------le~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~  172 (224)
                              --++..|..-+..||.-+..+-.+.+.+.-+-.+++++-.-|   |.++-....+...++..|...++.=.+
T Consensus       151 ~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~E  227 (306)
T PF04849_consen  151 ESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTE  227 (306)
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence                    123344444444555555555555554444444444443333   555556666777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCC
Q psy5037         173 QVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAP  222 (224)
Q Consensus       173 EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~  222 (224)
                      +....+++...|...+..+...|-.+-...+.+...|........+|.+.
T Consensus       228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE  277 (306)
T PF04849_consen  228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE  277 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777888888888888888888888888888887777766666543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.40  E-value=0.06  Score=45.53  Aligned_cols=114  Identities=21%  Similarity=0.248  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHH
Q psy5037          77 QHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSL  156 (224)
Q Consensus        77 ~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~  156 (224)
                      .++..-+..+...+...-+.+.++-.++-.+..++..++..+......++.+..+...+..++..+...|.+....++.+
T Consensus        70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l  149 (194)
T PF08614_consen   70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL  149 (194)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555666666666666777777777777777777888888888888888888888888888888888899989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         157 EAKLEELSHVTAQLETQVQCCQEEKYRLGEELAG  190 (224)
Q Consensus       157 e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~  190 (224)
                      ...+..+.-....+++.+..++.|...|..-...
T Consensus       150 ~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  150 QDELQALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988999999999999888888765544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=96.40  E-value=0.52  Score=40.25  Aligned_cols=116  Identities=14%  Similarity=0.184  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-hHHHHHHHHHHHHHHhHHh
Q psy5037          73 KLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-AESEKKVMKLEALVQDKDC  151 (224)
Q Consensus        73 k~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-~~~~~ri~~le~~I~e~~~  151 (224)
                      +.-+.++...+.++...+...-.....+..++..+...+..|+.++..+=..-   +-++ ..+-.++..++..+..+..
T Consensus        29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g---~edLAr~al~~k~~~e~~~~~l~~  105 (221)
T PF04012_consen   29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG---REDLAREALQRKADLEEQAERLEQ  105 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444445555566666667777777765542111   1122 2345677778888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC  191 (224)
Q Consensus       152 ~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~  191 (224)
                      .+..+..++..|...+..++..|..++..+..+..-...+
T Consensus       106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a  145 (221)
T PF04012_consen  106 QLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA  145 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888887776655443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.34  E-value=0.83  Score=41.90  Aligned_cols=48  Identities=13%  Similarity=0.117  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          69 AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELEN  116 (224)
Q Consensus        69 leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~  116 (224)
                      ...+..+...|..++..+...+.....++..+..++..+...+...+.
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~  179 (423)
T TIGR01843       132 QSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE  179 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455555555555555555555544444444444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.31  E-value=0.41  Score=38.07  Aligned_cols=73  Identities=23%  Similarity=0.291  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037         137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT  212 (224)
Q Consensus       137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~  212 (224)
                      ..+..++.+.......|..+..........+...+.   ....++..+..++..+...|+.|..+-..|=.||.++
T Consensus        59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   59 KELQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334444444444444444444444444333333332   3455667778888888888888888877777777654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0978|consensus

Probab=96.30  E-value=1.4  Score=44.27  Aligned_cols=15  Identities=20%  Similarity=0.208  Sum_probs=10.0

Q ss_pred             HhHHHHHHHHHHHHH
Q psy5037          15 LATTEIDRFKYELNN   29 (224)
Q Consensus        15 ~~~~e~~~lr~ql~~   29 (224)
                      ..-.|+.++.+++-.
T Consensus       397 ka~~E~e~l~q~l~~  411 (698)
T KOG0978|consen  397 KARAETESLLQRLKA  411 (698)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            456677777777665

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=96.15  E-value=0.75  Score=39.55  Aligned_cols=95  Identities=18%  Similarity=0.220  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037          40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH  119 (224)
Q Consensus        40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~  119 (224)
                      ||+-|.-.|-+...++..--.+|=.+...+.+....+......+..+.+.+..+..+......++.....++.-|-.++.
T Consensus        11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~   90 (202)
T PF06818_consen   11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG   90 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence            45555555555555555555555555555555555555555555555555555555666666666666666666666666


Q ss_pred             hhhhhhhhhhhhHhH
Q psy5037         120 SLDGEMKSCKNLLAE  134 (224)
Q Consensus       120 ~lE~e~nel~le~~~  134 (224)
                      .++.++..++-++..
T Consensus        91 ~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   91 QLEAELAELREELAC  105 (202)
T ss_pred             hhHHHHHHHHHHHHh
Confidence            666666666555533

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0995|consensus

Probab=96.03  E-value=1.7  Score=42.60  Aligned_cols=59  Identities=19%  Similarity=0.346  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE   88 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~   88 (224)
                      ++..+..+...+..+++-+..+.+..+.....++.+..+++.-+.+++.+..+.+.|..
T Consensus       264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~  322 (581)
T KOG0995|consen  264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK  322 (581)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666666666666666666666666666666666666655555543

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=96.02  E-value=0.72  Score=38.23  Aligned_cols=112  Identities=16%  Similarity=0.202  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQ--------TELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE   88 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq--------~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~   88 (224)
                      ..+|+.+|-.+..++.....+...++...        .|++.+.-+|+.+..+|++...++..|+......+.-++-+..
T Consensus         5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke   84 (177)
T PF13870_consen    5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE   84 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777666666666666554        5889999999999999999999999999999988888888888


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037          89 ILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC  128 (224)
Q Consensus        89 ~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel  128 (224)
                      .+.....+...+...+......+..+...+..+..+.+.+
T Consensus        85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~  124 (177)
T PF13870_consen   85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL  124 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777766666665555555555555554444444443333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.99  E-value=1.2  Score=40.74  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         186 EELAGCQETLDTMLRQKEELRLQL  209 (224)
Q Consensus       186 ~dL~~~re~~~kld~~~e~l~~qL  209 (224)
                      .++..+......+......+...+
T Consensus       246 ~~l~~~~~~l~~~~~~l~~~~~~l  269 (423)
T TIGR01843       246 EELTEAQARLAELRERLNKARDRL  269 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG1029|consensus

Probab=95.92  E-value=2.3  Score=43.32  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQ  169 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~  169 (224)
                      ++....+..++....+.|..+..|+.+|+.-+..
T Consensus       548 kdqldelskE~esk~~eidi~n~qlkelk~~~~~  581 (1118)
T KOG1029|consen  548 KDQLDELSKETESKLNEIDIFNNQLKELKEDVNS  581 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4444445555555555555555555555444433

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.88  E-value=1.1  Score=39.13  Aligned_cols=117  Identities=15%  Similarity=0.168  Sum_probs=93.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037          14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK   93 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k   93 (224)
                      +++++-|.-+..+|..++.....+...-++++..+..+......+...=...-.-=+  +.-......++..++..+...
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~al~~~~~le~~~~~~  104 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREALEEKQSLEDLAKAL  104 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence            788888888888888888888888888888888888888877777665443322211  333456778888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037          94 ESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL  132 (224)
Q Consensus        94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~  132 (224)
                      ......+-.....+...+..|+.+|.++....+.+....
T Consensus       105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~  143 (225)
T COG1842         105 EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK  143 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888877666

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.87  E-value=1.4  Score=40.39  Aligned_cols=155  Identities=17%  Similarity=0.163  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHh
Q psy5037          42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE-----SERLDLLKHLKFISQETAELEN  116 (224)
Q Consensus        42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE-----~E~~~Lle~~~~l~~e~~~lE~  116 (224)
                      ..|..-|.+....+..+..++..+...+.+++..+.-++.-+++....-....     .++.+|..++..+...+..|+.
T Consensus        68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~  147 (319)
T PF09789_consen   68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLER  147 (319)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666677777777777777777766666666665555543332221     5667799999999999999999


Q ss_pred             hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         117 NNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD  196 (224)
Q Consensus       117 r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~  196 (224)
                      -++.+-.+..++.-++..+++++.-|..++......-..-=.-|.+|=-.-.=|-+.|..+++|+.-+...+.--+...+
T Consensus       148 d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  148 DLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998899999888777765443311111124444444455666666666666666666666555544

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.84  E-value=1  Score=38.51  Aligned_cols=98  Identities=22%  Similarity=0.331  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      |.+|+.++..++..       -......+..+..++..+..-|..+..++.+|+..+..|...-..+...    ......
T Consensus        29 IksLKeei~emkk~-------e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~----k~rl~~   97 (201)
T PF13851_consen   29 IKSLKEEIAEMKKK-------EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNL----KARLKE   97 (201)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            55566665555543       4445566777788888888889999999999999888888766654433    333445


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSC  128 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel  128 (224)
                      +..++..+.-+.+.|+.++..++.+-.++
T Consensus        98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL  126 (201)
T PF13851_consen   98 LEKELKDLKWEHEVLEQRFEKLEQERDEL  126 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777777777777777777765554

>KOG0978|consensus

Probab=95.80  E-value=2.5  Score=42.64  Aligned_cols=185  Identities=19%  Similarity=0.174  Sum_probs=87.5

Q ss_pred             HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy5037          14 KLATTEIDRFK-YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI------   86 (224)
Q Consensus        14 ~~~~~e~~~lr-~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl------   86 (224)
                      .....+.+-++ +.+|...+++........-|+.......    .+-.++...=...++|..+...+..++..-      
T Consensus       411 ~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k----~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfk  486 (698)
T KOG0978|consen  411 ALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK----CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFK  486 (698)
T ss_pred             HHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34445555566 5666666655555555555554444433    344444444444555555555444444443      


Q ss_pred             ---------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHh
Q psy5037          87 ---------------EEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDC  151 (224)
Q Consensus        87 ---------------E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~  151 (224)
                                     .......+..+..|......+...+..+|.+.+-+-+..+.+-.++......+..+...+.+...
T Consensus       487 lm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~  566 (698)
T KOG0978|consen  487 LMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQ  566 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           44444444444445555555555556666666666666555555554444444444444444433


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK  202 (224)
Q Consensus       152 ~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~  202 (224)
                      ..+.+..+++.....+..+...+.....+.+...-....+.+.|..|....
T Consensus       567 ~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl  617 (698)
T KOG0978|consen  567 SLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL  617 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.78  E-value=1.8  Score=41.02  Aligned_cols=72  Identities=11%  Similarity=0.200  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         138 KVMKLEALVQDKDCSIKSLEAKLEELSH-----VTAQLETQVQCCQEEKY-RLGEELAGCQETLDTMLRQKEELRLQL  209 (224)
Q Consensus       138 ri~~le~~I~e~~~~i~~~e~qL~~l~~-----~~~~lE~EL~~lk~er~-~l~~dL~~~re~~~kld~~~e~l~~qL  209 (224)
                      ....+..+|......|..++.++..+..     ...+.+..+..++.... .+..++..++..+..+...+.....++
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l  314 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDS  314 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555432     22233555555554443 566666666666666666666655554

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0994|consensus

Probab=95.78  E-value=3.3  Score=43.97  Aligned_cols=160  Identities=17%  Similarity=0.226  Sum_probs=96.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHH-------HHHhhhhh
Q psy5037          51 MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD---LLKHLKFISQETA-------ELENNNHS  120 (224)
Q Consensus        51 ~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~---Lle~~~~l~~e~~-------~lE~r~~~  120 (224)
                      .-..++.|..+|.+.-..+.+...=+...+..+++++.+.+...+-+..   +...+.++.+-+.       ...+-|+.
T Consensus      1509 tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1509 TPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred             CHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345667777777777777777777888888888887777766555443   4555555544443       33444445


Q ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLR  200 (224)
Q Consensus       121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~  200 (224)
                      ++..+--.+--+..++++.+..++-....-..+..++.-+++|+.....-..+-+.....-..++..-..++.....|+.
T Consensus      1589 a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~ 1668 (1758)
T KOG0994|consen 1589 ADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQK 1668 (1758)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544444444455555555555555555555556665555555555555555555555556666666666666666666


Q ss_pred             HHHHHHHHHh
Q psy5037         201 QKEELRLQLA  210 (224)
Q Consensus       201 ~~e~l~~qL~  210 (224)
                      ..+.+..-+.
T Consensus      1669 ~~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1669 YYELVDRLLE 1678 (1758)
T ss_pred             HHHHHHHHHH
Confidence            6666555444

>KOG0963|consensus

Probab=95.73  E-value=2.4  Score=41.97  Aligned_cols=168  Identities=20%  Similarity=0.254  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------H--------HHHHH
Q psy5037          44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL-----------D--------LLKHL  104 (224)
Q Consensus        44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~-----------~--------Lle~~  104 (224)
                      +..++..+..+++.+...+++...++.+++.+--.+.....++...-...+-.+.           .        |.++-
T Consensus       112 ~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~  191 (629)
T KOG0963|consen  112 LLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEE  191 (629)
T ss_pred             HhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555666666666666666555554433333322222221111111111           1        66666


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhH-------------------------hHHHHHHHHHHHHHHhHHhhH------
Q psy5037         105 KFISQETAELENNNHSLDGEMKSCKNLL-------------------------AESEKKVMKLEALVQDKDCSI------  153 (224)
Q Consensus       105 ~~l~~e~~~lE~r~~~lE~e~nel~le~-------------------------~~~~~ri~~le~~I~e~~~~i------  153 (224)
                      ..+.+.+..++.++.++.+.+-....++                         ..++.+|-.++++++.+....      
T Consensus       192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~  271 (629)
T KOG0963|consen  192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS  271 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            6666666777777766655554444444                         445777777777776665443      


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037         154 ---------KSLEAKLEELSHVTAQLETQVQCC----QEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD  211 (224)
Q Consensus       154 ---------~~~e~qL~~l~~~~~~lE~EL~~l----k~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~  211 (224)
                               ......|..+..-++.|-.+++.+    ..++......++.+........+.++.+..+|++
T Consensus       272 ~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~  342 (629)
T KOG0963|consen  272 KKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS  342 (629)
T ss_pred             hhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                     333444444444444444444433    2344444555555555555555555555555544

>KOG0612|consensus

Probab=95.72  E-value=3.5  Score=43.82  Aligned_cols=127  Identities=22%  Similarity=0.220  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q psy5037          25 YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI------------------   86 (224)
Q Consensus        25 ~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl------------------   86 (224)
                      +++...+..+..+...|+.++..++.+...+..+....+.+......+.....+++++...+                  
T Consensus       501 ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~  580 (1317)
T KOG0612|consen  501 EKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQEL  580 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHh
Confidence            34455778888888899999999998888888887777766666666665555555554422                  


Q ss_pred             ------HHHHhhHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037          87 ------EEILSKKESERLD--------------LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALV  146 (224)
Q Consensus        87 ------E~~i~~kE~E~~~--------------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I  146 (224)
                            ++.+.-++..-..              .-.+...+.+.+..+.+.+.++++.......++.-++.-.....+.+
T Consensus       581 e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~  660 (1317)
T KOG0612|consen  581 EENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERI  660 (1317)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                  2222222111111              33333444555556666677776666666666655544444444444


Q ss_pred             HhHHh
Q psy5037         147 QDKDC  151 (224)
Q Consensus       147 ~e~~~  151 (224)
                      .+.+.
T Consensus       661 ~~~ek  665 (1317)
T KOG0612|consen  661 SDSEK  665 (1317)
T ss_pred             HHHHH
Confidence            44443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.63  E-value=2.6  Score=41.78  Aligned_cols=181  Identities=16%  Similarity=0.185  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHH
Q psy5037          36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDL---LKHLKFISQETA  112 (224)
Q Consensus        36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~L---le~~~~l~~e~~  112 (224)
                      ...+++..|+..|..+...+..+..++......+..+..++.....+..+++..+.-+++-..=|   -..+..|..-++
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~  404 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE  404 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444443333332222211   133445555555


Q ss_pred             HHHhhhhhhhhhhhhhhhhH----hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy5037         113 ELENNNHSLDGEMKSCKNLL----AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY------  182 (224)
Q Consensus       113 ~lE~r~~~lE~e~nel~le~----~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~------  182 (224)
                      .-..++..+.+.-...+.++    ..++....+...+.......|+.+..++..+...+..-++...+|..+..      
T Consensus       405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~  484 (594)
T PF05667_consen  405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV  484 (594)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            55555555555555555555    33344444333444444444444444444443333333333333333322      


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy5037         183 ----------RLGEELAGCQETLDTMLRQKEELRLQLADTENYK  216 (224)
Q Consensus       183 ----------~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~  216 (224)
                                ++-..+.--+..+.+.-..--.|+.++|++..+.
T Consensus       485 ~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL  528 (594)
T PF05667_consen  485 NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL  528 (594)
T ss_pred             CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      2223333334444555555555556666555544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.62  E-value=4.2  Score=44.04  Aligned_cols=79  Identities=11%  Similarity=0.129  Sum_probs=40.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          12 EAKLATTEIDRFKYELNNLELERNRAQSEVRRLQT--ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEI   89 (224)
Q Consensus        12 ~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~--dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~   89 (224)
                      +..-...+|..+..++.++...+..+..+...+=.  ++...-.........+.....++......+......+..+...
T Consensus       750 ~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~  829 (1353)
T TIGR02680       750 RLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRE  829 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666666666666666554433  3444444444444444444444444444444444444444443


Q ss_pred             H
Q psy5037          90 L   90 (224)
Q Consensus        90 i   90 (224)
                      +
T Consensus       830 l  830 (1353)
T TIGR02680       830 L  830 (1353)
T ss_pred             H
Confidence            3

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0995|consensus

Probab=95.56  E-value=2.7  Score=41.30  Aligned_cols=74  Identities=12%  Similarity=0.161  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT  212 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~  212 (224)
                      ...++..+.+..-.+..+....+-|+++...+..++.+|..+-..-..+..   .++++-.+.+..++.+..++..+
T Consensus       431 ~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~---e~eee~~k~~~E~e~le~~l~~l  504 (581)
T KOG0995|consen  431 SEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKE---EAEEEWKKCRKEIEKLEEELLNL  504 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555555566666666666666666555443333332   23334444445555555554443

>KOG0963|consensus

Probab=95.55  E-value=2.8  Score=41.51  Aligned_cols=58  Identities=16%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQE  193 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re  193 (224)
                      ++.--+++-..+..|-.+|..++.++..+...+.+|+..|..- .+.+.++.+|+-++.
T Consensus       301 i~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~  358 (629)
T KOG0963|consen  301 IERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA  358 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence            3445567788888888999999999999999999999888775 677888888877764

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.51  E-value=2.4  Score=40.42  Aligned_cols=41  Identities=7%  Similarity=0.013  Sum_probs=21.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5037          85 RIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM  125 (224)
Q Consensus        85 rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~  125 (224)
                      .+...+..++.++..+...|..-+-.+..+..++..+...+
T Consensus       251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l  291 (498)
T TIGR03007       251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK  291 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence            34445555666666665555544444444444444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0976|consensus

Probab=95.50  E-value=3.5  Score=42.29  Aligned_cols=83  Identities=16%  Similarity=0.189  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE   96 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E   96 (224)
                      +-+..-+.+||--+..+-.....+...||+-+..+.......+-+|+....++..+...+.....+|-.+=+.+-.+.-+
T Consensus        98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~  177 (1265)
T KOG0976|consen   98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEE  177 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence            33344444444444333344444444444444444444444444444444444444444444444444444444444333


Q ss_pred             HHH
Q psy5037          97 RLD   99 (224)
Q Consensus        97 ~~~   99 (224)
                      +.+
T Consensus       178 lt~  180 (1265)
T KOG0976|consen  178 LNE  180 (1265)
T ss_pred             HhH
Confidence            333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.49  E-value=0.7  Score=36.54  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=16.3

Q ss_pred             HHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHH
Q psy5037         113 ELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKD  150 (224)
Q Consensus       113 ~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~  150 (224)
                      .+-+.++.+||++..++-++..+......+..+|....
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~   57 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM   57 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.45  E-value=0.74  Score=36.40  Aligned_cols=18  Identities=33%  Similarity=0.477  Sum_probs=7.1

Q ss_pred             HHHHHHHHhhHHHHHHHH
Q psy5037          83 VQRIEEILSKKESERLDL  100 (224)
Q Consensus        83 ~~rlE~~i~~kE~E~~~L  100 (224)
                      |.++.+.|..++.|+..+
T Consensus        18 ve~L~s~lr~~E~E~~~l   35 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASL   35 (120)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444443333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.43  E-value=0.004  Score=62.43  Aligned_cols=16  Identities=25%  Similarity=0.511  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5037          17 TTEIDRFKYELNNLEL   32 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~   32 (224)
                      ..++..++.+|+.+..
T Consensus       191 ~~e~~~l~~~le~~~~  206 (722)
T PF05557_consen  191 ESELEELKEQLEELQS  206 (722)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.43  E-value=3.8  Score=42.33  Aligned_cols=119  Identities=24%  Similarity=0.301  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH-----------HHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037          93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAE-----------SEKKVMKLEALVQDKDCSIKSLEAKLE  161 (224)
Q Consensus        93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~-----------~~~ri~~le~~I~e~~~~i~~~e~qL~  161 (224)
                      ....+..+.+.+..+...+..++..+..+...+.++......           +..+...++..+......+..+..++.
T Consensus       313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~  392 (908)
T COG0419         313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQ  392 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            344444455666666666666666666666655555333311           122223333333322223333333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037         162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD  211 (224)
Q Consensus       162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~  211 (224)
                      .+......+...+..+......+...+..+...+..+...+..+...+..
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~  442 (908)
T COG0419         393 ELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ  442 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.37  E-value=2.8  Score=40.46  Aligned_cols=89  Identities=13%  Similarity=0.212  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE   96 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E   96 (224)
                      -++|+.|+-|.+.+-..    .++...+...+..+...-.++.....-.+.-...|+.+.++|-+-|.++...|..+|.+
T Consensus       270 ~~~i~~lk~~n~~l~e~----i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEee  345 (622)
T COG5185         270 NTDIANLKTQNDNLYEK----IQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEE  345 (622)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            45666666666654333    33344455555555566666666666666667777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHH
Q psy5037          97 RLDLLKHLKFISQ  109 (224)
Q Consensus        97 ~~~Lle~~~~l~~  109 (224)
                      +..|..+.+.|+.
T Consensus       346 i~~L~~~~d~L~~  358 (622)
T COG5185         346 IKALQSNIDELHK  358 (622)
T ss_pred             HHHHHhhHHHHHH
Confidence            7664444444333

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=95.34  E-value=0.45  Score=36.61  Aligned_cols=79  Identities=16%  Similarity=0.336  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------------------hHHHHHHHHHHHHHHhHHhhHHHH
Q psy5037          99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------------------AESEKKVMKLEALVQDKDCSIKSL  156 (224)
Q Consensus        99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------------------~~~~~ri~~le~~I~e~~~~i~~~  156 (224)
                      .+..+|..+..++..+-..+..+++.+++..+=+                      .+..+=+..++.+|...+..|..+
T Consensus         7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~l   86 (110)
T TIGR02338         7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTL   86 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555444                      233566678888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy5037         157 EAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       157 e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      +.++..+...+.+++..|+.+
T Consensus        87 ek~~~~l~~~l~e~q~~l~~~  107 (110)
T TIGR02338        87 QRQEERLREQLKELQEKIQEA  107 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888765

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=95.32  E-value=1.7  Score=37.46  Aligned_cols=109  Identities=10%  Similarity=0.142  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037          82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLE  161 (224)
Q Consensus        82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~  161 (224)
                      .+..+...+...-.....+..++..+...+..|+++...+=..=++ -|-+..+ .++......+..+...+.....++.
T Consensus        39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~E-dLAr~Al-~~k~~~~~~~~~l~~~~~~~~~~v~  116 (219)
T TIGR02977        39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRE-DLARAAL-IEKQKAQELAEALERELAAVEETLA  116 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444455556666777777788888887766444332 2333333 3667777777777777777777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQ  192 (224)
Q Consensus       162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~r  192 (224)
                      .+...+..|+..+..++..+..+..-...++
T Consensus       117 ~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~  147 (219)
T TIGR02977       117 KLQEDIAKLQAKLAEARARQKALAIRHQAAS  147 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888777775555554433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=95.32  E-value=0.023  Score=51.98  Aligned_cols=128  Identities=13%  Similarity=0.178  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037          18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER   97 (224)
Q Consensus        18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~   97 (224)
                      -++..++.-|.++......+...++.+...+..+...+..+...|.+....+..|...++.+..-|..+...|...-.-+
T Consensus        28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l  107 (326)
T PF04582_consen   28 GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL  107 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Confidence            35556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHH
Q psy5037          98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEAL  145 (224)
Q Consensus        98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~  145 (224)
                      ......+..|...+..+...+-++.+.++..-+.+-+++.|++.++..
T Consensus       108 s~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~  155 (326)
T PF04582_consen  108 SDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG  155 (326)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence            666666666666666666666666666666666666666666666644

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG0980|consensus

Probab=95.26  E-value=4.3  Score=41.85  Aligned_cols=54  Identities=17%  Similarity=0.141  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL  188 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL  188 (224)
                      +.+.+..+...+.....+-...+...++..+.+..|+.||.-+..+-..++..+
T Consensus       464 ~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~  517 (980)
T KOG0980|consen  464 VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL  517 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444444444444444444444444444444444444443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.24  E-value=1  Score=39.41  Aligned_cols=95  Identities=14%  Similarity=0.068  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037          93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET  172 (224)
Q Consensus        93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~  172 (224)
                      |..+...+..++..--+.++.-+.-+.+...+.+.|..|+....+.+......|...++.|...+++.......+..+.+
T Consensus         9 K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e   88 (230)
T PF10146_consen    9 KTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE   88 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444555555555555555555555555555555555555566556655555555555555


Q ss_pred             HHHHHHHHHHHHHHH
Q psy5037         173 QVQCCQEEKYRLGEE  187 (224)
Q Consensus       173 EL~~lk~er~~l~~d  187 (224)
                      ++.-|+++.+.+..+
T Consensus        89 ey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   89 EYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.20  E-value=0.38  Score=34.41  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHY   79 (224)
Q Consensus        16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~   79 (224)
                      .+.++.+|+..||.+.+..+.....+..|...=+.+...+...-.++..+..+++.++.++..+
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4677888888888877777777777777777766666666666666666666666666665554

>KOG0243|consensus

Probab=95.07  E-value=5.3  Score=41.91  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      +......+..+...++.++++-..++..+.-+...+...+...+.-|............+-..++.....+-..+..+..
T Consensus       474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~  553 (1041)
T KOG0243|consen  474 QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFE  553 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455556666666666666665555555555555544444445554444444444455555555555555555554


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy5037         180 EKYRLGEELAGCQETLDTM  198 (224)
Q Consensus       180 er~~l~~dL~~~re~~~kl  198 (224)
                      ...........-+...+.+
T Consensus       554 kld~~~~~~d~n~~~~~~~  572 (1041)
T KOG0243|consen  554 KLDRKDRLDDDNQEVIDDF  572 (1041)
T ss_pred             HhhhhhccccccHHHHHHH
Confidence            4444444443333333333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.05  E-value=0.023  Score=57.08  Aligned_cols=88  Identities=24%  Similarity=0.262  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037          23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK  102 (224)
Q Consensus        23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle  102 (224)
                      +.+-|.+++...-.+..+++.++.++..+...+..+..++..+...+.+++..+.....-+.+++....-..+|++-|-.
T Consensus       341 l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~  420 (722)
T PF05557_consen  341 LARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRA  420 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666666666666666666666666666666666666666666666666666665555666655554


Q ss_pred             HHHHHHHH
Q psy5037         103 HLKFISQE  110 (224)
Q Consensus       103 ~~~~l~~e  110 (224)
                      ++.+...+
T Consensus       421 ~L~syd~e  428 (722)
T PF05557_consen  421 QLKSYDKE  428 (722)
T ss_dssp             --------
T ss_pred             HHHHhhhh
Confidence            44444443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=95.00  E-value=1.3  Score=34.40  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037          34 RNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAE  113 (224)
Q Consensus        34 r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~  113 (224)
                      +..+..-...++..|..+.+.++...--++.+..+.+.|+..+..+.++-..+...+..+.+.+.++...+..-..--..
T Consensus         4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~   83 (107)
T PF09304_consen    4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLE   83 (107)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555667777777777777777777777777777777777777777777777777777777777777764333347


Q ss_pred             HHhhhhhhhhhhhhhhhhH
Q psy5037         114 LENNNHSLDGEMKSCKNLL  132 (224)
Q Consensus       114 lE~r~~~lE~e~nel~le~  132 (224)
                      +++++-..+.+.+.+.+-+
T Consensus        84 l~~r~~k~~~dka~lel~l  102 (107)
T PF09304_consen   84 LESRLLKAQKDKAILELKL  102 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHH
Confidence            7777777777777665544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.99  E-value=1.8  Score=35.99  Aligned_cols=68  Identities=15%  Similarity=0.328  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI   86 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl   86 (224)
                      ++.....++..+..+.++....+..++..+....................+..++.....+..++..+
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l  149 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL  149 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344443333333333333333333333333333333333333333333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.91  E-value=1.5  Score=34.78  Aligned_cols=42  Identities=19%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037          18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQ   59 (224)
Q Consensus        18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~   59 (224)
                      .++++|.-++..+.....++...+..++.|+..........+
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq   44 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ   44 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555544444433333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.88  E-value=3  Score=38.05  Aligned_cols=157  Identities=16%  Similarity=0.173  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037          40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH  119 (224)
Q Consensus        40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~  119 (224)
                      ...|++..-.=..=+.+-+..-+..+...+..|+.....+...+..+.+.+.........|..++..+..-....+.   
T Consensus       129 ~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~---  205 (325)
T PF08317_consen  129 TYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES---  205 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence            33444444444444444455555555555555555555555555555544444444444444444444333333111   


Q ss_pred             hhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy5037         120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAG----CQETL  195 (224)
Q Consensus       120 ~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~----~re~~  195 (224)
                             .-..++..++.++..+...|......+...+.++..+...+..+..+...+..+...+...+..    .....
T Consensus       206 -------~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev  278 (325)
T PF08317_consen  206 -------CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEV  278 (325)
T ss_pred             -------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence                   0122334445555555555555555555555555555555555555555555554444433332    22334


Q ss_pred             HHHHHHHHHHH
Q psy5037         196 DTMLRQKEELR  206 (224)
Q Consensus       196 ~kld~~~e~l~  206 (224)
                      ..|...++.|+
T Consensus       279 ~~Lk~~~~~Le  289 (325)
T PF08317_consen  279 KRLKAKVDALE  289 (325)
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=94.77  E-value=5.2  Score=40.27  Aligned_cols=78  Identities=14%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE   94 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE   94 (224)
                      +.++--|.-||.++.........+|-.+..+|..-.-.+..+......+.-+...|..+..++..++..+...|....
T Consensus       449 ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k  526 (786)
T PF05483_consen  449 EKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSK  526 (786)
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            344455556666666666666666666666666655555666666666666666666666666666666655554443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.74  E-value=1.8  Score=34.86  Aligned_cols=81  Identities=16%  Similarity=0.222  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus        98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      .+|+...+.-..-.+.|...++.+.+++..+......+..+++.++.++.........+..++..+........+++..+
T Consensus        41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl  120 (151)
T PF11559_consen   41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL  120 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666666666667777777777777777776666666666666666666555555555555555555544444444444


Q ss_pred             H
Q psy5037         178 Q  178 (224)
Q Consensus       178 k  178 (224)
                      +
T Consensus       121 k  121 (151)
T PF11559_consen  121 K  121 (151)
T ss_pred             H
Confidence            4

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.74  E-value=0.4  Score=41.97  Aligned_cols=77  Identities=22%  Similarity=0.312  Sum_probs=51.1

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037          48 LYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE  124 (224)
Q Consensus        48 L~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e  124 (224)
                      +.++......+..++++...+.++|-.++...-+++..+.+.|.+++.++..|.+.|+.+-.+..+|..|+..++-.
T Consensus       130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            33455555555666666666666666666666666666666677777777777777777777777777777766654

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.72  E-value=3  Score=37.32  Aligned_cols=52  Identities=29%  Similarity=0.335  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         155 SLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELR  206 (224)
Q Consensus       155 ~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~  206 (224)
                      ..+..+..+..-..+++..+..|......+..-+..+.....++...+..+.
T Consensus       166 ~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~  217 (265)
T COG3883         166 ALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE  217 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3344444444444444555555555444444444444444444444444444

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.58  E-value=0.81  Score=41.72  Aligned_cols=8  Identities=13%  Similarity=-0.039  Sum_probs=3.0

Q ss_pred             hhhhhhhH
Q psy5037         125 MKSCKNLL  132 (224)
Q Consensus       125 ~nel~le~  132 (224)
                      .|.+.+++
T Consensus       101 ~n~~~~~l  108 (314)
T PF04111_consen  101 YNELQLEL  108 (314)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF13514 AAA_27: AAA domain

Probab=94.56  E-value=7.4  Score=41.17  Aligned_cols=32  Identities=31%  Similarity=0.343  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      .+..+..++..+..++..+...+.....++..
T Consensus       802 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~  833 (1111)
T PF13514_consen  802 ERERLQEQLEELEEELEQAEEELEELEAELAE  833 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555555555555

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.56  E-value=5.1  Score=39.30  Aligned_cols=56  Identities=18%  Similarity=0.163  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI   86 (224)
Q Consensus        31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl   86 (224)
                      ....+.+...+..+=+.|+.-..-...+...+.....-+..++...+.+..++.++
T Consensus       277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v  332 (560)
T PF06160_consen  277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERV  332 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444455555555555555555555555555555

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=94.50  E-value=7.5  Score=40.98  Aligned_cols=25  Identities=16%  Similarity=0.224  Sum_probs=11.5

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037         139 VMKLEALVQDKDCSIKSLEAKLEEL  163 (224)
Q Consensus       139 i~~le~~I~e~~~~i~~~e~qL~~l  163 (224)
                      +..+...|..+...+......+..+
T Consensus       779 ~~~l~~~i~~~~~~~~~~~~~~~~~  803 (1047)
T PRK10246        779 LTQLEQLKQNLENQRQQAQTLVTQT  803 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444433

>KOG0994|consensus

Probab=94.50  E-value=8  Score=41.29  Aligned_cols=53  Identities=11%  Similarity=0.081  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL  188 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL  188 (224)
                      +++...|=..-..+...++.++........++.....+|..|..+-.++..++
T Consensus      1695 ~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33333444444444555555555555555555555555555555555544444

>PRK11281 hypothetical protein; Provisional

Probab=94.50  E-value=7.9  Score=41.22  Aligned_cols=43  Identities=7%  Similarity=0.213  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      .++..+.+....+.+....+..|.+.+..+.....+.-....+
T Consensus       125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lse  167 (1113)
T PRK11281        125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA  167 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            3666666666666666777777766666665555544444444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=94.48  E-value=2.3  Score=39.63  Aligned_cols=132  Identities=12%  Similarity=0.262  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5037          42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL  121 (224)
Q Consensus        42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~l  121 (224)
                      +-+...|+.|..-...+..-+.+....++-|-..+..+...|..-|.-|+   .....+..+|+.+...+..+..++.++
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~  292 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQA  292 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777777766666666666655555555444444443333333332   234448888999999999999999999


Q ss_pred             hhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         122 DGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       122 E~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      .+-+++...++..+-+.....+.+|.+..+.+..- +-+-..+.++..|..|++++
T Consensus       293 s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~kLk~EI~qM  347 (359)
T PF10498_consen  293 SEGVSERTRELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTKLKQEIKQM  347 (359)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHh
Confidence            88888888888777777777777777776666554 55556666666666666654

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0962|consensus

Probab=94.47  E-value=8.4  Score=41.39  Aligned_cols=177  Identities=16%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5037          27 LNNLELERNRAQSEVRRLQTELYDM---NQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKH  103 (224)
Q Consensus        27 l~~lr~~r~~a~~E~~rlq~dL~~~---~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~  103 (224)
                      ||+++.-+-+...++..++..|.-+   ..+-..+..-|......+...+.++..+..+|..+...|..+.....+    
T Consensus       187 ld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~e----  262 (1294)
T KOG0962|consen  187 LDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKE----  262 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence            4446677777777777777665533   334444555555555666666666666666665555555544433322    


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhH--------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         104 LKFISQETAELENNNHSLDGEMKSCKNLL--------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ  175 (224)
Q Consensus       104 ~~~l~~e~~~lE~r~~~lE~e~nel~le~--------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~  175 (224)
                      |+.+-.++..+++.-.++.-+++.+....        ..+.+-..................+..++.+......+-....
T Consensus       263 l~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~  342 (1294)
T KOG0962|consen  263 LEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKT  342 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22223333333333333333333333222        1222333333334444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         176 CCQEEKYRLGEELAGCQETLDTMLRQKEELRL  207 (224)
Q Consensus       176 ~lk~er~~l~~dL~~~re~~~kld~~~e~l~~  207 (224)
                      .+-.+-..++........+.+..++-.+.+..
T Consensus       343 ~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~  374 (1294)
T KOG0962|consen  343 ELDLEQSELQAEAEFHQELKRQRDSLIQELAH  374 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444555555555555555555554433

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=94.47  E-value=3.1  Score=36.34  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus        98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      ..+..+|..+...+..|+.+...+=.--++ .|- ..+-.++.+++..+..+...+.....+...++..+..|+..+.++
T Consensus        55 k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E-~LA-r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~  132 (225)
T COG1842          55 KQLERKLEEAQARAEKLEEKAELALQAGNE-DLA-REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL  132 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555566666777777776655433331 111 234678888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy5037         178 QEEKYRLGEELAGCQ  192 (224)
Q Consensus       178 k~er~~l~~dL~~~r  192 (224)
                      +..+..+.......+
T Consensus       133 ~~~~~~l~ar~~~ak  147 (225)
T COG1842         133 RAKKEALKARKAAAK  147 (225)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988888877665543

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.45  E-value=3.1  Score=36.37  Aligned_cols=87  Identities=14%  Similarity=0.214  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037          41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS  120 (224)
Q Consensus        41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~  120 (224)
                      +..+..++.....++..+...+.....++...+..+......+......+................+...+..+..++..
T Consensus        58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  137 (302)
T PF10186_consen   58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQ  137 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444433333333444444444444444444444


Q ss_pred             hhhhhhh
Q psy5037         121 LDGEMKS  127 (224)
Q Consensus       121 lE~e~ne  127 (224)
                      +...+..
T Consensus       138 l~~~l~~  144 (302)
T PF10186_consen  138 LQSQLAR  144 (302)
T ss_pred             HHHHHHH
Confidence            4444333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.44  E-value=3.9  Score=37.39  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=16.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037          55 NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK   92 (224)
Q Consensus        55 ~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~   92 (224)
                      .+-++.-.+.+..-++.|+.....+...+..+.+.+..
T Consensus       139 ~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~  176 (312)
T smart00787      139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPK  176 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444433333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.43  E-value=6.2  Score=39.73  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDK-DCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       135 ~~~ri~~le~~I~e~-~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      ++.+++.++..|..- ...+.+...++......+..|...+..+
T Consensus       321 l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~  364 (754)
T TIGR01005       321 AKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL  364 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444331 1222333344444444444444444444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=94.41  E-value=0.91  Score=32.43  Aligned_cols=64  Identities=19%  Similarity=0.290  Sum_probs=56.6

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037         149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT  212 (224)
Q Consensus       149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~  212 (224)
                      .+..+.++...+..+...++..+.+++.|..+|+....-|..+-..|.+|...++.+..+|...
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567778888888889999999999999999999999999999999999999999999987654

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.38  E-value=6.4  Score=39.66  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037          83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE  162 (224)
Q Consensus        83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~  162 (224)
                      +..+...+...+.+..+|...|..-+-.+..+..++.+++..+...      +..=+.++...+........+++.++..
T Consensus       290 i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e------~~~~~~~~~~~~~~a~~~~~~L~~~l~~  363 (754)
T TIGR01005       290 IQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSE------LQKITKSLLMQADAAQARESQLVSDVNQ  363 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444555555444444444444444444443321      1111233334444444444455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         163 LSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQ  208 (224)
Q Consensus       163 l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~q  208 (224)
                      ++..+..+-..    ..+-..|..+....+.....+-.+.+.+..+
T Consensus       364 ~~~~~~~~~~~----~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~  405 (754)
T TIGR01005       364 LKAASAQAGEQ----QVDLDALQRDAAAKRQLYESYLTNYRQAASR  405 (754)
T ss_pred             HHHHHHhCcHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55444443222    2233335555555555555555555554443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK11281 hypothetical protein; Provisional

Probab=94.35  E-value=8.6  Score=40.99  Aligned_cols=10  Identities=20%  Similarity=0.328  Sum_probs=5.4

Q ss_pred             HHHHHHHHHH
Q psy5037          23 FKYELNNLEL   32 (224)
Q Consensus        23 lr~ql~~lr~   32 (224)
                      ++.||+++..
T Consensus        41 iq~~l~~~~~   50 (1113)
T PRK11281         41 VQAQLDALNK   50 (1113)
T ss_pred             HHHHHHHhhc
Confidence            4466665544

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.30  E-value=2.7  Score=36.81  Aligned_cols=74  Identities=15%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy5037          58 IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNL  131 (224)
Q Consensus        58 l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le  131 (224)
                      ...-|.++..+.+.|..+.-.+..++.-|-.+|..+|..+.....+-......+.++.+-+.-+-..+|+++.+
T Consensus        30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666666666666666666666666666666666666655555555555566655666666666666555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=94.28  E-value=0.09  Score=48.17  Aligned_cols=116  Identities=15%  Similarity=0.206  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-------hHHHHHHHHHHHHHHhHHhhH
Q psy5037          81 CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-------AESEKKVMKLEALVQDKDCSI  153 (224)
Q Consensus        81 ~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-------~~~~~ri~~le~~I~e~~~~i  153 (224)
                      +.+.-+-+++..+|.-...|.+.+..+...+..++++++++.+.+.+..-.+       ..++..+.++...|...-..+
T Consensus        28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l  107 (326)
T PF04582_consen   28 GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL  107 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Confidence            4455555666666666666666655555555555555555555555544433       333333333334444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD  196 (224)
Q Consensus       154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~  196 (224)
                      ......|+.|...+..++..+-.|+.......-.+..+.....
T Consensus       108 s~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~  150 (326)
T PF04582_consen  108 SDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVK  150 (326)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence            4444444444444444444444444444444444444433333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.28  E-value=1.6  Score=39.74  Aligned_cols=87  Identities=24%  Similarity=0.323  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ  109 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~  109 (224)
                      +......+..+...+...|..+..+...+..+|...+.+...+...-..|-.+...+.-.+.....++..+..+|+....
T Consensus        48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~  127 (314)
T PF04111_consen   48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN  127 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555555555555555555555556666665555566666666666666666666666666666666


Q ss_pred             HHHHHHh
Q psy5037         110 ETAELEN  116 (224)
Q Consensus       110 e~~~lE~  116 (224)
                      .++.|..
T Consensus       128 ~L~~L~k  134 (314)
T PF04111_consen  128 QLDRLRK  134 (314)
T ss_dssp             HHHCHHT
T ss_pred             HHHHHHh
Confidence            6665543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.19  E-value=5.2  Score=37.84  Aligned_cols=155  Identities=15%  Similarity=0.181  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5037          42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL  121 (224)
Q Consensus        42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~l  121 (224)
                      -+-+-++..++.--+.+...+..+-.+...+..+.+++-.+-..|-+-...+..+..+|......+..+...+-++...+
T Consensus       133 ~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~  212 (499)
T COG4372         133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAA  212 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444444444445555444444444444444443333


Q ss_pred             hhh---hhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         122 DGE---MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD  196 (224)
Q Consensus       122 E~e---~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~  196 (224)
                      ++.   +....-........|......|++....|.....+|.+-......+|..+.-+..+-..+...+.+-+++.-
T Consensus       213 q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~  290 (499)
T COG4372         213 QARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQ  290 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332   222222223335556666666666666666666666666666666777777777777777777776666543

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.08  E-value=5.4  Score=37.70  Aligned_cols=68  Identities=28%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI   86 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl   86 (224)
                      +++-++-||-+++....-+..+.+-...+-+.+..+.+....+-+....++..++...-+--.++.++
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~  142 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL  142 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555444444444444444444444444444444444444444444433

>KOG0962|consensus

Probab=94.00  E-value=10  Score=40.71  Aligned_cols=69  Identities=16%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037         140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA  210 (224)
Q Consensus       140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~  210 (224)
                      ..++.++.+....+..+..|+....  ...+.++-..|...+..+......+.-.|-.+.+++..+.++|.
T Consensus      1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            4455555555555555556655555  55556667777777777777777777788888888888888877

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.97  E-value=5  Score=36.87  Aligned_cols=41  Identities=27%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         158 AKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM  198 (224)
Q Consensus       158 ~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kl  198 (224)
                      .||+.++.....|+.+++.+-+++..+..+-..-+..|..|
T Consensus       133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL  173 (319)
T PF09789_consen  133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL  173 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555554444444444433

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=93.92  E-value=1.4  Score=33.54  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ  178 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk  178 (224)
                      .+=+..++.++......|..++.++..+.+.+.++..+|..++
T Consensus        62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445666677777777777777777777777777777776654

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=93.89  E-value=4.7  Score=36.32  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5037          39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN  118 (224)
Q Consensus        39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~  118 (224)
                      ..|..|...++.+..+.+--...|+.+++.+..-+..+.....+.+-|....-.+-..+..|...-++|..++..-|+.+
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv   97 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV   97 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence            33444444455555555555555555555555555555555555554444444444444455555566666666666666


Q ss_pred             hhhhhhhhhhhhhHhHHHHHHHHHHHH
Q psy5037         119 HSLDGEMKSCKNLLAESEKKVMKLEAL  145 (224)
Q Consensus       119 ~~lE~e~nel~le~~~~~~ri~~le~~  145 (224)
                      .-++|.+++.+..++.+...+.-++.+
T Consensus        98 ~~lEgQl~s~Kkqie~Leqelkr~KsE  124 (307)
T PF10481_consen   98 NFLEGQLNSCKKQIEKLEQELKRCKSE  124 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666655444444433333333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.83  E-value=0.017  Score=57.91  Aligned_cols=54  Identities=37%  Similarity=0.424  Sum_probs=0.0

Q ss_pred             HHHHHHhHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         142 LEALVQDKDCSIKSLEAKLEELSHVT-------AQLETQVQCCQEEKYRLGEELAGCQETL  195 (224)
Q Consensus       142 le~~I~e~~~~i~~~e~qL~~l~~~~-------~~lE~EL~~lk~er~~l~~dL~~~re~~  195 (224)
                      +...+..+...|..++..+.......       ..|.+.+..+..++..+..+...+++.+
T Consensus       361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~  421 (713)
T PF05622_consen  361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN  421 (713)
T ss_dssp             -------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443333       3333444444444444444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0979|consensus

Probab=93.82  E-value=9.9  Score=39.82  Aligned_cols=63  Identities=6%  Similarity=0.123  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML  199 (224)
Q Consensus       137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld  199 (224)
                      +++......+..+...+...=..+......+......+..++......+.++..+++.+..++
T Consensus       290 ~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q  352 (1072)
T KOG0979|consen  290 SKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ  352 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333444444444444444444444444444444444444444333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.81  E-value=5.2  Score=36.55  Aligned_cols=54  Identities=24%  Similarity=0.257  Sum_probs=27.2

Q ss_pred             HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL  195 (224)
Q Consensus       142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~  195 (224)
                      ++..|......|......++.+...+..+...+.....++..+..++.+++..+
T Consensus       209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444555555555555555555555555555555555433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.72  E-value=1.9  Score=31.11  Aligned_cols=65  Identities=28%  Similarity=0.313  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKE  203 (224)
Q Consensus       139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e  203 (224)
                      ...|+.+|......|..+...++.|...-..+.++-..|+.+...+..+..+.....+.+=+.++
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45678888888888888888888888888888888888888888888777777776666654443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.65  E-value=1.9  Score=31.03  Aligned_cols=65  Identities=22%  Similarity=0.251  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL   90 (224)
Q Consensus        26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i   90 (224)
                      .|+.+..++..|...|..|+..++.+..++..+..+...+..+...++.....+...+..+=+.|
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35667777777777777777777777777777777777777777777766666666555544443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0243|consensus

Probab=93.64  E-value=9.4  Score=40.16  Aligned_cols=147  Identities=18%  Similarity=0.163  Sum_probs=83.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          14 KLATTEIDRFKYELNNLELERNRAQSEVRR---------LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ   84 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~r---------lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~   84 (224)
                      |-...||.+|++-|.++|.+......+=+-         ....|..+..+++.+...|.....-.-.+...-..+..+..
T Consensus       407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~  486 (1041)
T KOG0243|consen  407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE  486 (1041)
T ss_pred             HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            455689999999999987766554444433         33334444444444444444444444333333337778888


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHhhhhhhhhhhhhhhhhHhHHHH-------HHHHHHHHHH
Q psy5037          85 RIEEILSKKESERLDLLKHLKFISQETA----------ELENNNHSLDGEMKSCKNLLAESEK-------KVMKLEALVQ  147 (224)
Q Consensus        85 rlE~~i~~kE~E~~~Lle~~~~l~~e~~----------~lE~r~~~lE~e~nel~le~~~~~~-------ri~~le~~I~  147 (224)
                      +++..|.....+...+..+|..+...+.          ..|..+.+.   ...++.....+..       ++....+--.
T Consensus       487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d  563 (1041)
T KOG0243|consen  487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDD  563 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            8888888888888887777777766632          223333333   3444444433333       3334444444


Q ss_pred             hHHhhHHHHHHHHHHH
Q psy5037         148 DKDCSIKSLEAKLEEL  163 (224)
Q Consensus       148 e~~~~i~~~e~qL~~l  163 (224)
                      .+...|..+.+++...
T Consensus       564 ~n~~~~~~~~~~l~~~  579 (1041)
T KOG0243|consen  564 DNQEVIDDFQSQLSEN  579 (1041)
T ss_pred             ccHHHHHHHhhhhhHH
Confidence            5556666666655443

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.58  E-value=4.8  Score=35.42  Aligned_cols=109  Identities=26%  Similarity=0.321  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ  109 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~  109 (224)
                      +..+.-.+..++.+.+..|.........|..+....+.+...|.........++.+|.........++..|-.++..+..
T Consensus        10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~   89 (246)
T PF00769_consen   10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA   89 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566666666676777777777777777777777777777777777777777766666666667777777777


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhHhHHHHH
Q psy5037         110 ETAELENNNHSLDGEMKSCKNLLAESEKK  138 (224)
Q Consensus       110 e~~~lE~r~~~lE~e~nel~le~~~~~~r  138 (224)
                      .+..++.-....+.+...++-++..++..
T Consensus        90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~  118 (246)
T PF00769_consen   90 EIARLEEESERKEEEAEELQEELEEARED  118 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666666666666666666666555443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.42  E-value=1.8  Score=31.77  Aligned_cols=39  Identities=23%  Similarity=0.413  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037          27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS   65 (224)
Q Consensus        27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~   65 (224)
                      |+.+..++..|...|.-||..+++....+..+..+....
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~   44 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA   44 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777777777777777766653

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=93.40  E-value=3.9  Score=33.85  Aligned_cols=146  Identities=16%  Similarity=0.183  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHhh
Q psy5037          39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ-ETAELENN  117 (224)
Q Consensus        39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~-e~~~lE~r  117 (224)
                      +-+..+..-...+-.-......+.+....++.+++.++..++.+|+.++..--..-....++...|..-++ ++...=..
T Consensus         6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~   85 (159)
T PF05384_consen    6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEE   85 (159)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHH
Confidence            33445555555666666777888999999999999999999999999988877777777777888876543 34444445


Q ss_pred             hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         118 NHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL  184 (224)
Q Consensus       118 ~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l  184 (224)
                      ++++--.+.-++-.-..++.|=+.|+..+......|+-.+.-++...-.+.=|.+.|.++-...+.+
T Consensus        86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~  152 (159)
T PF05384_consen   86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA  152 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5555555555555556677777888888888888888777777777777777777777766544433

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.37  E-value=5.1  Score=35.03  Aligned_cols=76  Identities=9%  Similarity=0.230  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         105 KFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE  180 (224)
Q Consensus       105 ~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e  180 (224)
                      ..+..++.....++..+...+..++..+...+.++..+...+......+..+..........+..+...+...+..
T Consensus        59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (302)
T PF10186_consen   59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQR  134 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444433333333333333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=93.31  E-value=2  Score=42.50  Aligned_cols=92  Identities=22%  Similarity=0.367  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHH
Q psy5037          76 LQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKS  155 (224)
Q Consensus        76 ~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~  155 (224)
                      ...|..++..++..+..++.++..|...+..+..++..|++++..+.-+.-           -..-...+|......|..
T Consensus       417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----------~~~~~~rei~~~~~~I~~  485 (652)
T COG2433         417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-----------DKVRKDREIRARDRRIER  485 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555554444444433322           112234455555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         156 LEAKLEELSHVTAQLETQVQCCQ  178 (224)
Q Consensus       156 ~e~qL~~l~~~~~~lE~EL~~lk  178 (224)
                      ++..|.+....+..|+..|..++
T Consensus       486 L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         486 LEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666655

>PRK09343 prefoldin subunit beta; Provisional

Probab=93.13  E-value=2.8  Score=32.95  Aligned_cols=45  Identities=13%  Similarity=0.127  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      ..+=+..+..++.-+...|..++.+...+.+.+.+++..|+.+-.
T Consensus        69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~  113 (121)
T PRK09343         69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS  113 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355567777777777888888888888888888888888877643

>KOG0946|consensus

Probab=93.08  E-value=12  Score=38.51  Aligned_cols=40  Identities=10%  Similarity=0.199  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET  172 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~  172 (224)
                      .....+..++..++..++..|..+-..+++....+..+..
T Consensus       802 ~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~  841 (970)
T KOG0946|consen  802 SEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGS  841 (970)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhc
Confidence            3334444445555555555555444444444444444443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.96  E-value=13  Score=38.53  Aligned_cols=114  Identities=26%  Similarity=0.344  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHh----HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQD----KDCSIKSLEAKLEELSHVTAQLETQVQ  175 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e----~~~~i~~~e~qL~~l~~~~~~lE~EL~  175 (224)
                      +..+...+...+..|..++..+...+..+.-....+..........+..    ....+..|+..+...-.....+...+.
T Consensus       313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~  392 (908)
T COG0419         313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQ  392 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4444444444444444444444444444444443332222222222222    222233333333333334444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037         176 CCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE  213 (224)
Q Consensus       176 ~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~  213 (224)
                      .+..+...+...+..+...+.++...+..+...+....
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~  430 (908)
T COG0419         393 ELKEELAELSAALEEIQEELEELEKELEELERELEELE  430 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555554444433

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=2  Score=42.50  Aligned_cols=48  Identities=13%  Similarity=0.104  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037          63 EASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQE  110 (224)
Q Consensus        63 e~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e  110 (224)
                      .....++..+...++.+..+++.|+..+..+.+++..|..++..+..+
T Consensus       418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~  465 (652)
T COG2433         418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE  465 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444444444333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=92.91  E-value=12  Score=37.88  Aligned_cols=183  Identities=17%  Similarity=0.245  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q psy5037          18 TEIDRFKYELNN-------LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH-------YCCEV   83 (224)
Q Consensus        18 ~e~~~lr~ql~~-------lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~-------~~~E~   83 (224)
                      .-+..|+.+|..       +...-..+.-++..+.-+.+.+.-+...+...|..+...-+.|-.+++.       ++.++
T Consensus       471 kQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnel  550 (786)
T PF05483_consen  471 KQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNEL  550 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555553       3444445556666666666666666666666666555544444443333       33444


Q ss_pred             HHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH-------HHHHHHHHHHHHHhHHhh
Q psy5037          84 QRIEEILSKKESERLDL----LKHLKFISQETAELENNNHSLDGEMKSCKNLLAE-------SEKKVMKLEALVQDKDCS  152 (224)
Q Consensus        84 ~rlE~~i~~kE~E~~~L----le~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~-------~~~ri~~le~~I~e~~~~  152 (224)
                      ..+...+..+..+....    -+.++++..++...+..+.-+++.+|.++...+.       ++..+..|...|.--...
T Consensus       551 es~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq  630 (786)
T PF05483_consen  551 ESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQ  630 (786)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444432    2345666666666677777777777777665533       333444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         153 IKSLEAKLEELSHVTAQLETQVQCCQE----EKYRLGEELAGCQETLDTMLRQKEELRL  207 (224)
Q Consensus       153 i~~~e~qL~~l~~~~~~lE~EL~~lk~----er~~l~~dL~~~re~~~kld~~~e~l~~  207 (224)
                      ...|+..       |..|..++..++.    +-..+..+|.+-.-.-..|...++++..
T Consensus       631 ~~~~eik-------Vn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~  682 (786)
T PF05483_consen  631 SNVYEIK-------VNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKL  682 (786)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4444443       4444444444433    3344555555555555555555555543

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK10698 phage shock protein PspA; Provisional

Probab=92.91  E-value=5.8  Score=34.39  Aligned_cols=105  Identities=11%  Similarity=0.122  Sum_probs=70.4

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037          87 EEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV  166 (224)
Q Consensus        87 E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~  166 (224)
                      ...+...-.....+..++..+...+..|+.+..-+=..=++ -|-+..+ .++......+..+...+.....++..|...
T Consensus        44 r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~E-dLAr~AL-~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~  121 (222)
T PRK10698         44 RSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKE-DLARAAL-IEKQKLTDLIATLEHEVTLVDETLARMKKE  121 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444456666777777888888887766544322 2333333 445556677788888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         167 TAQLETQVQCCQEEKYRLGEELAGCQE  193 (224)
Q Consensus       167 ~~~lE~EL~~lk~er~~l~~dL~~~re  193 (224)
                      +..|+..|..++..+..|..-...++.
T Consensus       122 l~~L~~ki~eak~k~~~L~aR~~~A~a  148 (222)
T PRK10698        122 IGELENKLSETRARQQALMLRHQAASS  148 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888776666554

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=92.73  E-value=9.2  Score=36.28  Aligned_cols=25  Identities=8%  Similarity=0.186  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037         190 GCQETLDTMLRQKEELRLQLADTEN  214 (224)
Q Consensus       190 ~~re~~~kld~~~e~l~~qL~~~~~  214 (224)
                      .+....+.+...+..+..++.....
T Consensus       288 ~~~~~l~~~~~~l~~~~~~l~~a~~  312 (457)
T TIGR01000       288 KVKQEITDLNQKLLELESKIKSLKE  312 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555544433

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG1029|consensus

Probab=92.72  E-value=13  Score=38.12  Aligned_cols=120  Identities=23%  Similarity=0.264  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-
Q psy5037          57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD---LLKHLKFISQETAELENNNHSLDGEMKSCKNLL-  132 (224)
Q Consensus        57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~---Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-  132 (224)
                      .-.++|+..++...+|+.+++-- =|-+|....+..+..+-..   +..+...++-++.-|-.+++.|++.+-..+..+ 
T Consensus       390 erkkeie~rEaar~ElEkqRqle-wErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~t  468 (1118)
T KOG1029|consen  390 ERKKEIERREAAREELEKQRQLE-WERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDIT  468 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccc
Confidence            34556777777777877776533 3344556666666666555   666666677777777777777776666666555 


Q ss_pred             ------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 ------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       133 ------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                            .+......-...+|.++...|++|...+-.|.-.-..|...|+..
T Consensus       469 t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~  519 (1118)
T KOG1029|consen  469 TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK  519 (1118)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence                  333333333444555555555555555555544444555554443

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=92.56  E-value=6.5  Score=34.11  Aligned_cols=167  Identities=19%  Similarity=0.197  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQH------------NMTIQQELEASRTEAEDVKLQLQHYCCEVQRI   86 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e------------~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl   86 (224)
                      ++...+...+.+......+-.+++.++..|......            ...|+..|......+.+....+..+.+.+..+
T Consensus        32 ~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~  111 (240)
T PF12795_consen   32 EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEI  111 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555555555555555555443            34444455555555555555555555555555


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q psy5037          87 EEILSKKESERLDLLKHLKFISQETAELENN--NHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELS  164 (224)
Q Consensus        87 E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r--~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~  164 (224)
                      .......-..+.+...+...+...+..+-+.  -.-.++....+..++..+.-++.-++.....+-....-|..++.-+.
T Consensus       112 ~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~  191 (240)
T PF12795_consen  112 QTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLK  191 (240)
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence            4444444444444444444443333322110  11112333334444455677777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy5037         165 HVTAQLETQVQCCQEEKYRLG  185 (224)
Q Consensus       165 ~~~~~lE~EL~~lk~er~~l~  185 (224)
                      ..+..++..+..|++-.....
T Consensus       192 ~~~~~l~~~l~~Lq~~ln~~R  212 (240)
T PF12795_consen  192 ARIQRLQQQLQALQNLLNQKR  212 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777776555444

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=92.54  E-value=5.2  Score=33.03  Aligned_cols=31  Identities=16%  Similarity=0.214  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037         184 LGEELAGCQETLDTMLRQKEELRLQLADTEN  214 (224)
Q Consensus       184 l~~dL~~~re~~~kld~~~e~l~~qL~~~~~  214 (224)
                      +..|+..+.+....+...+..+.+.+..+..
T Consensus       143 ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  143 LLRDYDKTKEEVEELRKEIKELERKVEILEM  173 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666666666666555554443

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=92.26  E-value=7.5  Score=34.16  Aligned_cols=64  Identities=11%  Similarity=0.228  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYC   80 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~   80 (224)
                      +.++.+|-..++++..+-..+......+....+.+....+.+...|......+.++-.++..|.
T Consensus        51 e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~  114 (264)
T PF06008_consen   51 EKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLN  114 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3334444444444444444444444444444444444444444444444444444444444333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=92.09  E-value=3.6  Score=30.16  Aligned_cols=75  Identities=17%  Similarity=0.238  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037          43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS  120 (224)
Q Consensus        43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~  120 (224)
                      |+.+-|+.+..+...+..++.......++++.++..-++||..+...+..++..-..|..+|   .++|.+|-..+++
T Consensus         1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~   75 (79)
T PF08581_consen    1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ   75 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence            46677888888888888888899999999999999999999999999999999999998888   4566665554443

; PDB: 3VP9_B 3VP8_B.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.08  E-value=10  Score=35.34  Aligned_cols=128  Identities=17%  Similarity=0.227  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMT----IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE   94 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~----l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE   94 (224)
                      -+..++...+.+...-.++.....+++.++......+..    |+..++..-.+......++.........+.+-++.+.
T Consensus       221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t  300 (359)
T PF10498_consen  221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT  300 (359)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            355666666667777777777777777766555544443    4444444444444444444444444444455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHH
Q psy5037          95 SERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK  154 (224)
Q Consensus        95 ~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~  154 (224)
                      .+...++++++.+..++++-.+.+-+        --++-.++.-+..|+.+|.+..-.|.
T Consensus       301 ~~L~~IseeLe~vK~emeerg~~mtD--------~sPlv~IKqAl~kLk~EI~qMdvrIG  352 (359)
T PF10498_consen  301 RELAEISEELEQVKQEMEERGSSMTD--------GSPLVKIKQALTKLKQEIKQMDVRIG  352 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCC--------CCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            55555555555555555444444333        24444455555666666665554443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.91  E-value=11  Score=35.25  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         183 RLGEELAGCQETLDTMLRQKEELR  206 (224)
Q Consensus       183 ~l~~dL~~~re~~~kld~~~e~l~  206 (224)
                      .|..++...+.....+-.+.+...
T Consensus       346 ~L~r~~~~~~~~y~~ll~r~~e~~  369 (444)
T TIGR03017       346 VLQRDVENAQRAYDAAMQRYTQTR  369 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555544444444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.86  E-value=3  Score=36.64  Aligned_cols=81  Identities=19%  Similarity=0.166  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037          44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDG  123 (224)
Q Consensus        44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~  123 (224)
                      +..+..++....+.+..+-+.+-.++++++.+...+..++.+++...+.++.....|...+..|..-.+.|+.....++.
T Consensus       133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~  212 (290)
T COG4026         133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE  212 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence            33444444444444444444555555555555555555555555555555555555555555555555555555544443


Q ss_pred             h
Q psy5037         124 E  124 (224)
Q Consensus       124 e  124 (224)
                      .
T Consensus       213 ~  213 (290)
T COG4026         213 E  213 (290)
T ss_pred             H
Confidence            3

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=91.77  E-value=5.5  Score=31.53  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHH----------------HHHHHHHHHHHHhHHhhHHHHHHH
Q psy5037          96 ERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAES----------------EKKVMKLEALVQDKDCSIKSLEAK  159 (224)
Q Consensus        96 E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~----------------~~ri~~le~~I~e~~~~i~~~e~q  159 (224)
                      +...++.+|..+..++..+--+..+++..+++...-+..+                ==+ .+...-+.+....++.++..
T Consensus         7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk-~~k~~~~~eL~er~E~Le~r   85 (119)
T COG1382           7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVK-VSKEEAVDELEERKETLELR   85 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhh-hhHHHHHHHHHHHHHHHHHH
Confidence            3445666677777777776666666666666655544221                000 13444445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         160 LEELSHVTAQLETQVQCCQEEKYRL  184 (224)
Q Consensus       160 L~~l~~~~~~lE~EL~~lk~er~~l  184 (224)
                      +..+.+.+..+.++|..++.....+
T Consensus        86 i~tLekQe~~l~e~l~eLq~~i~~~  110 (119)
T COG1382          86 IKTLEKQEEKLQERLEELQSEIQKA  110 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666666655554443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=91.65  E-value=5.8  Score=36.18  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         103 HLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY  182 (224)
Q Consensus       103 ~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~  182 (224)
                      -++.+...+..+|.+++.+=.-.+-|-.++..+.=.|..|...+.+.+..+-.+...+.++......+...+..++.++.
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~  157 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD  157 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666655555555444444444444444444444444444444444444433333344444444444


Q ss_pred             HHHHHH
Q psy5037         183 RLGEEL  188 (224)
Q Consensus       183 ~l~~dL  188 (224)
                      .++..|
T Consensus       158 ~Lre~L  163 (302)
T PF09738_consen  158 ELREQL  163 (302)
T ss_pred             HHHHHH
Confidence            443333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.59  E-value=16  Score=36.43  Aligned_cols=14  Identities=29%  Similarity=0.413  Sum_probs=5.1

Q ss_pred             HhhHHHHHHHHHHH
Q psy5037         150 DCSIKSLEAKLEEL  163 (224)
Q Consensus       150 ~~~i~~~e~qL~~l  163 (224)
                      ...+...+.+|..+
T Consensus       397 ~~~~~~~e~el~~l  410 (650)
T TIGR03185       397 LKELRELEEELAEV  410 (650)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0979|consensus

Probab=91.46  E-value=21  Score=37.58  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      |.+.+.-+..-...||+..+++.++++....++-.+..++...-..+......+.....++..+..+.......+...+.
T Consensus       267 l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k  346 (1072)
T KOG0979|consen  267 LEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKK  346 (1072)
T ss_pred             HHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444445555555555566665555555545555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHH
Q psy5037         180 EKYRLGEELA  189 (224)
Q Consensus       180 er~~l~~dL~  189 (224)
                      ....++..|.
T Consensus       347 ~i~~~q~el~  356 (1072)
T KOG0979|consen  347 MILDAQAELQ  356 (1072)
T ss_pred             HHHHHHhhhh
Confidence            5555554443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=91.42  E-value=13  Score=35.30  Aligned_cols=12  Identities=17%  Similarity=0.412  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALV  146 (224)
Q Consensus       135 ~~~ri~~le~~I  146 (224)
                      ++.+++.++..+
T Consensus       280 l~~qi~~l~~~l  291 (498)
T TIGR03007       280 TKREIAQLEEQK  291 (498)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=91.37  E-value=4.1  Score=30.18  Aligned_cols=42  Identities=24%  Similarity=0.327  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC  176 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~  176 (224)
                      ..+=+..++..+......|..++.++..+...+..++..|..
T Consensus        60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~  101 (106)
T PF01920_consen   60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE  101 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566677777777777777777777777777777766654

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>TIGR00634 recN DNA repair protein RecN

Probab=91.22  E-value=16  Score=35.78  Aligned_cols=41  Identities=10%  Similarity=0.105  Sum_probs=26.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQ   53 (224)
Q Consensus        13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~   53 (224)
                      ...+-.+...++++|..+........+++..++..++++..
T Consensus       163 ~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~  203 (563)
T TIGR00634       163 YRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE  203 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            34445666666777777766667777777777776666654

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.17  E-value=12  Score=34.28  Aligned_cols=173  Identities=18%  Similarity=0.216  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5037          28 NNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFI  107 (224)
Q Consensus        28 ~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l  107 (224)
                      +.+......+.++++.|...++....++..|..++..+...-..|......--.=|             -..|+..++.+
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i-------------sN~LlKkl~~l   89 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFI-------------SNTLLKKLQQL   89 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence            55777788888888888888888888888888888887777666655443221111             01134444444


Q ss_pred             HHHHHHHHhhhhhh-hhhhhhhhhhHhHHHHHHHHHHHHHHh-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         108 SQETAELENNNHSL-DGEMKSCKNLLAESEKKVMKLEALVQD-KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG  185 (224)
Q Consensus       108 ~~e~~~lE~r~~~l-E~e~nel~le~~~~~~ri~~le~~I~e-~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~  185 (224)
                      ..+-..|=..+..= ++--|.+..-+..++..+..++..+.. .+..+.-+..+|..|..........|..|+.++..+.
T Consensus        90 ~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE  169 (310)
T PF09755_consen   90 KKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLE  169 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence            44433332222211 222244444444455555555555543 4455566666666666666666666667777777766


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHhchH
Q psy5037         186 EELAGCQET-LDTMLRQKEELRLQLADTE  213 (224)
Q Consensus       186 ~dL~~~re~-~~kld~~~e~l~~qL~~~~  213 (224)
                      ..|..-.+. ..+|..+++.|...--.+.
T Consensus       170 n~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq  198 (310)
T PF09755_consen  170 NTLEQEQEALVNRLWKQMDKLEAEKRRLQ  198 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666554433 3344555554444433333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.15  E-value=19  Score=36.49  Aligned_cols=181  Identities=18%  Similarity=0.223  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHHHH
Q psy5037          36 RAQSEVRRLQTELYDMNQHN-------MTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK----------KESERL   98 (224)
Q Consensus        36 ~a~~E~~rlq~dL~~~~~e~-------~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~----------kE~E~~   98 (224)
                      .+...+..|+.+|..+....       ..+..+-+.+...+..+...+..-++-|..+..-|..          -+.|+.
T Consensus       166 sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~  245 (739)
T PF07111_consen  166 SLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPERE  245 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHH
Confidence            33344444444444444433       3333344444444444444444444444444444422          245666


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------------------------------------------
Q psy5037          99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------------------------------------------  132 (224)
Q Consensus        99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------------------------------------------  132 (224)
                      .|++-...|.++-+.|-..+.-+...++++.-=+                                              
T Consensus       246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQ  325 (739)
T PF07111_consen  246 ELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQ  325 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            6777777777776666666666666655533222                                              


Q ss_pred             -hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037         133 -AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD  211 (224)
Q Consensus       133 -~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~  211 (224)
                       ....+-+..+..+|..++....+...+=+-|...+..=..++.--+-....|..+|..+.+.+..+.........+|..
T Consensus       326 eleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~  405 (739)
T PF07111_consen  326 ELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKL  405 (739)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1112333344444444444444444444444444433333333333334456777777777777777777776666665


Q ss_pred             hHHHH
Q psy5037         212 TENYK  216 (224)
Q Consensus       212 ~~~~~  216 (224)
                      +....
T Consensus       406 v~eav  410 (739)
T PF07111_consen  406 VSEAV  410 (739)
T ss_pred             HHHHH
Confidence            55443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=91.12  E-value=6.7  Score=31.30  Aligned_cols=75  Identities=13%  Similarity=0.242  Sum_probs=44.2

Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037          20 IDRFKYELNN----LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE   94 (224)
Q Consensus        20 ~~~lr~ql~~----lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE   94 (224)
                      .+++-.||++    +..-+..+.+.+.++-..|++...-.+.+..+.......+..+...+..+..-|.-|+..|..++
T Consensus        45 ~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie  123 (126)
T PF07889_consen   45 VASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE  123 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567777776    34444455555556666666666655666666666666666666666555555555555555443

The region featured in this family is approximately 100 amino acids long.

>PF13166 AAA_13: AAA domain

Probab=91.05  E-value=18  Score=36.02  Aligned_cols=143  Identities=15%  Similarity=0.202  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHH
Q psy5037          68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLD------LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK  141 (224)
Q Consensus        68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~  141 (224)
                      ...++...+..+...+..+...|..+-.....      +...+..+..-+..+...+......+..+..++..+...+..
T Consensus       323 ~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~  402 (712)
T PF13166_consen  323 DKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWL  402 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433322211      344445555555555555555555555555544444444433


Q ss_pred             HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037         142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT  212 (224)
Q Consensus       142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~  212 (224)
                      +.  +..+...|..|...+..+...+..++..+..++.....+..++..++......+..++.++..|..+
T Consensus       403 ~~--~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  403 HL--IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            21  2344445555555566666666666666666666666666666666666665666666666666554

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=90.93  E-value=11  Score=33.23  Aligned_cols=83  Identities=10%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037          15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE   94 (224)
Q Consensus        15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE   94 (224)
                      .+..++......++..+.....+..++..|..+++.+..................+.+-...+.+...|..+...|...-
T Consensus        28 ~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~  107 (264)
T PF06008_consen   28 DLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELI  107 (264)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555556666666666666666666666666666666666666555555555555555555555444443


Q ss_pred             HHH
Q psy5037          95 SER   97 (224)
Q Consensus        95 ~E~   97 (224)
                      ...
T Consensus       108 ~~~  110 (264)
T PF06008_consen  108 EQV  110 (264)
T ss_pred             HHH
Confidence            333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=90.86  E-value=17  Score=35.63  Aligned_cols=83  Identities=20%  Similarity=0.290  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY  215 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~  215 (224)
                      ..++.++...+.+....+.+-+.-.|.+...+..++.-|.....+-..+.+.|.++|+.=.+.....+.+..++-+..-.
T Consensus       353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~  432 (570)
T COG4477         353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY  432 (570)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777778888888888999999999999999999999999999999998888888888888888776655


Q ss_pred             HHh
Q psy5037         216 KTK  218 (224)
Q Consensus       216 ~~~  218 (224)
                      +..
T Consensus       433 mek  435 (570)
T COG4477         433 MEK  435 (570)
T ss_pred             HHH
Confidence            543

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.72  E-value=11  Score=32.97  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037          69 AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC  128 (224)
Q Consensus        69 leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel  128 (224)
                      ++.+....+....-=......++....+...|..+|+.+..+++.++..+..++..+.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q   82 (251)
T PF11932_consen   23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQ   82 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444555556666666666777777777777777776666666655554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG4360|consensus

Probab=90.61  E-value=13  Score=36.26  Aligned_cols=85  Identities=20%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ  109 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~  109 (224)
                      +........+++.+++..+..+...+-.+..++.....++++|..-++.|+.-=..+.......+....+.+..|+...+
T Consensus       217 ~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee  296 (596)
T KOG4360|consen  217 GQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE  296 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHH
Q psy5037         110 ETAEL  114 (224)
Q Consensus       110 e~~~l  114 (224)
                      ++..+
T Consensus       297 ELk~l  301 (596)
T KOG4360|consen  297 ELKCL  301 (596)
T ss_pred             HHHhh
Confidence            65544

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=90.59  E-value=9.8  Score=32.32  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELYDM   51 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~~~   51 (224)
                      ++.+......+...+...+...
T Consensus       101 lk~~~~~~~e~~k~le~~~~~~  122 (190)
T PF05266_consen  101 LKDDQEKLLEERKKLEKKIEEK  122 (190)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.49  E-value=5.6  Score=34.25  Aligned_cols=24  Identities=13%  Similarity=0.093  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          93 KESERLDLLKHLKFISQETAELEN  116 (224)
Q Consensus        93 kE~E~~~Lle~~~~l~~e~~~lE~  116 (224)
                      +..++..|..++..+..+++.++.
T Consensus       137 L~~~n~~L~~~l~~~~~~~~~l~~  160 (206)
T PRK10884        137 LKEENQKLKNQLIVAQKKVDAANL  160 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>KOG1937|consensus

Probab=90.49  E-value=17  Score=34.98  Aligned_cols=160  Identities=14%  Similarity=0.142  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKL--QLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELEN  116 (224)
Q Consensus        39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~--~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~  116 (224)
                      ..++.+..+|..+..+++.-...-..+..+++.+-.  .+..|...+..+-+-|-..+..+..+++.-+.|..+.+++-.
T Consensus       345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se  424 (521)
T KOG1937|consen  345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE  424 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444333333333333333322  244555566666666666666666666666666666655554


Q ss_pred             hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH-------HHHHHHHHHHHHHH--HH---HHHHHH
Q psy5037         117 NNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE-------LSHVTAQLETQVQC--CQ---EEKYRL  184 (224)
Q Consensus       117 r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~-------l~~~~~~lE~EL~~--lk---~er~~l  184 (224)
                      +++--=+-.-    ++--..-+...+=+..=.+.+.|+.+=++|.+       +++.+..+|.++-.  .+   ---+.+
T Consensus       425 ~L~Rsfavtd----ellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl  500 (521)
T KOG1937|consen  425 ALNRSFAVTD----ELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKL  500 (521)
T ss_pred             HHhhhHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHH
Confidence            4443221111    22112333344444444555666666666654       34555555555443  11   123457


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy5037         185 GEELAGCQETLDTMLRQK  202 (224)
Q Consensus       185 ~~dL~~~re~~~kld~~~  202 (224)
                      ..|+.+.+...+.|.+.+
T Consensus       501 ~~Dyqairqen~~L~~~i  518 (521)
T KOG1937|consen  501 HQDYQAIRQENDQLFSEI  518 (521)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            778888888877776654

>KOG1003|consensus

Probab=90.47  E-value=11  Score=32.49  Aligned_cols=55  Identities=16%  Similarity=0.252  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA  189 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~  189 (224)
                      +.+.+..+-.++-+.+..-+-.+.....|.+.+-.|+..|...+.+...+..+|.
T Consensus       142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD  196 (205)
T KOG1003|consen  142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD  196 (205)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555555555555555444444443

>KOG4673|consensus

Probab=90.33  E-value=23  Score=36.06  Aligned_cols=72  Identities=15%  Similarity=0.154  Sum_probs=33.9

Q ss_pred             HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037         142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL-AGCQETLDTMLRQKEELRLQLADTE  213 (224)
Q Consensus       142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL-~~~re~~~kld~~~e~l~~qL~~~~  213 (224)
                      +.+.|.-|.+.....+.-++..+..+..++..+..++.-.+.+..|| ...|-.-+.+...-..+-.|+.++.
T Consensus       521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR  593 (961)
T KOG4673|consen  521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLR  593 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            33444444444444555555555555555555555555555555554 2333333344444444444444433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=90.29  E-value=11  Score=32.45  Aligned_cols=184  Identities=20%  Similarity=0.219  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE   96 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E   96 (224)
                      .-||+-|++||-.+-....-=..+|-.|...|-...+       .+......+..+....+.-..++...+..+.++-.+
T Consensus         9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~-------~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E   81 (202)
T PF06818_consen    9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRA-------ELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE   81 (202)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence            3589999999987666666656666666555555544       444444444444444444444444555555554444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhh---hhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH----HHHHH
Q psy5037          97 RLDLLKHLKFISQETAELENNNHSL---DGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELS----HVTAQ  169 (224)
Q Consensus        97 ~~~Lle~~~~l~~e~~~lE~r~~~l---E~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~----~~~~~  169 (224)
                      ..-|.+.+..+..++..|-.....+   ......+ .+...+.-.-..-...+......++.|...|...+    .....
T Consensus        82 a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l-~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~  160 (202)
T PF06818_consen   82 AELLREKLGQLEAELAELREELACAGRLKRQCQLL-SESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSS  160 (202)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccc-cccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4444444444444444333333332   0000000 00001110000001112222222222333332222    23346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         170 LETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQ  208 (224)
Q Consensus       170 lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~q  208 (224)
                      |+.|=+--+++++.+...-.-+..-.+.+=..-..|...
T Consensus       161 Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~  199 (202)
T PF06818_consen  161 FEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERE  199 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777777766666555555554444444443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=90.27  E-value=0.83  Score=42.57  Aligned_cols=94  Identities=16%  Similarity=0.287  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQL----QHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL  114 (224)
Q Consensus        39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~----~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~l  114 (224)
                      +++..+...+.++..++..+...+.+....+..+....    .++.+.|..+++.|+..+..+.++......+...+..+
T Consensus        98 k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l  177 (370)
T PF02994_consen   98 KELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKL  177 (370)
T ss_dssp             --------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333333344444444444444444444444444333    24556666667777777666666666666666666666


Q ss_pred             HhhhhhhhhhhhhhhhhH
Q psy5037         115 ENNNHSLDGEMKSCKNLL  132 (224)
Q Consensus       115 E~r~~~lE~e~nel~le~  132 (224)
                      +.++.+++..+.--.+-+
T Consensus       178 ~~kl~DlEnrsRRnNiRI  195 (370)
T PF02994_consen  178 EDKLDDLENRSRRNNIRI  195 (370)
T ss_dssp             HHHHHHHHHHHTTTEEEE
T ss_pred             HHHHHHHHhhccCCceeE
Confidence            666666666544433433

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=90.24  E-value=11  Score=32.34  Aligned_cols=101  Identities=9%  Similarity=0.058  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037          39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH----YCCEVQR-IEEILSKKESERLDLLKHLKFISQETAE  113 (224)
Q Consensus        39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~----~~~E~~r-lE~~i~~kE~E~~~Lle~~~~l~~e~~~  113 (224)
                      ..+......+..+...-..++.++......+.++..+...    ....+++ +=......+.....|..++..+...+..
T Consensus        38 ~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~  117 (219)
T TIGR02977        38 DTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAK  117 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555555555555555444322    2222222 1112222233344466666666666666


Q ss_pred             HHhhhhhhhhhhhhhhhhHhHHHHHH
Q psy5037         114 LENNNHSLDGEMKSCKNLLAESEKKV  139 (224)
Q Consensus       114 lE~r~~~lE~e~nel~le~~~~~~ri  139 (224)
                      +..+++.++..+..++.....+.-|.
T Consensus       118 l~~~l~~L~~ki~~~k~k~~~l~ar~  143 (219)
T TIGR02977       118 LQEDIAKLQAKLAEARARQKALAIRH  143 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666665554443333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=90.17  E-value=6.3  Score=29.43  Aligned_cols=51  Identities=18%  Similarity=0.272  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037         168 AQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTK  218 (224)
Q Consensus       168 ~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~  218 (224)
                      ..++.+++.+..+|..|-.+|..+...|.++...-..+...|.+.......
T Consensus        35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~   85 (89)
T PF13747_consen   35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA   85 (89)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999887666543

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=89.87  E-value=8.5  Score=30.48  Aligned_cols=47  Identities=23%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE  180 (224)
Q Consensus       134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e  180 (224)
                      ++.+-+..+++++......+..+..+|..+...+..+...+..+..+
T Consensus        91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947         91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667777777777777777777777777777766666665543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.83  E-value=11  Score=32.40  Aligned_cols=12  Identities=25%  Similarity=0.493  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q psy5037          18 TEIDRFKYELNN   29 (224)
Q Consensus        18 ~e~~~lr~ql~~   29 (224)
                      +++..|+.+|+.
T Consensus       100 ~el~~l~~~l~~  111 (206)
T PRK10884        100 NQVKTLTDKLNN  111 (206)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=89.50  E-value=21  Score=34.58  Aligned_cols=59  Identities=25%  Similarity=0.192  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHH
Q psy5037          78 HYCCEVQRIEEILSKKESERLDLL------KHLKFISQETAELENNNHSLDGEMKSCKNLLAESE  136 (224)
Q Consensus        78 ~~~~E~~rlE~~i~~kE~E~~~Ll------e~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~  136 (224)
                      .|+.-+..+-..+..++.++..|.      .+|-..-....+|...+.-+-...+..+.++..++
T Consensus       177 ~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk  241 (511)
T PF09787_consen  177 NAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK  241 (511)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            344444444444555555555544      44555555556666666666666666666664443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG4643|consensus

Probab=89.44  E-value=31  Score=36.41  Aligned_cols=147  Identities=16%  Similarity=0.177  Sum_probs=83.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037          47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD---LLKHLKFISQETAELENNNHSLDG  123 (224)
Q Consensus        47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~---Lle~~~~l~~e~~~lE~r~~~lE~  123 (224)
                      ..-.+..+.+.|..+++.++..+.++..+.......-..+--....+..+...   -.+.+...+++.+.+=.-.+++.+
T Consensus       402 K~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~  481 (1195)
T KOG4643|consen  402 KHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEA  481 (1195)
T ss_pred             HHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33444555566666666666666666666666555555555555555444444   223333445555555555555555


Q ss_pred             hhhhhhhhH----hHHHHH---HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         124 EMKSCKNLL----AESEKK---VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQE  193 (224)
Q Consensus       124 e~nel~le~----~~~~~r---i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re  193 (224)
                      ..++++-..    ..+.++   +..+...+......+..+-.++..+......|+..+..+..++..|...+..+..
T Consensus       482 et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  482 ETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            555555443    112222   2334444555555566666666677777777777777777777777777766665

>KOG1853|consensus

Probab=89.39  E-value=16  Score=32.85  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         107 ISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGE  186 (224)
Q Consensus       107 l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~  186 (224)
                      +..++..++.++++++++.+-++.+.+...++-..                 |-...-+.++.|+.+|.+.+.-++.+..
T Consensus        50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~-----------------q~~q~y~q~s~Leddlsqt~aikeql~k  112 (333)
T KOG1853|consen   50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQED-----------------QRVQFYQQESQLEDDLSQTHAIKEQLRK  112 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888999999999988888887776655433                 3333334445555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5037         187 ELAGCQETLDTMLRQK  202 (224)
Q Consensus       187 dL~~~re~~~kld~~~  202 (224)
                      .+..+...-|-|...+
T Consensus       113 yiReLEQaNDdLErak  128 (333)
T KOG1853|consen  113 YIRELEQANDDLERAK  128 (333)
T ss_pred             HHHHHHHhccHHHHhh
Confidence            5555555555554443

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=89.13  E-value=13  Score=31.47  Aligned_cols=105  Identities=17%  Similarity=0.227  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL   98 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~   98 (224)
                      ....++..++.+......+...+..++..|+........- .+=...-.++.+|+.++.....++..+..-   =-..+.
T Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~---Dp~~i~  138 (188)
T PF03962_consen   63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSEN---DPEKIE  138 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHH
Confidence            3444555555555555555555555555555554333222 111222233333333333333333311110   012344


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037          99 DLLKHLKFISQETAELENNNHSLDGEMKS  127 (224)
Q Consensus        99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~ne  127 (224)
                      .+......+...+++|-++|..+.+=+..
T Consensus       139 ~~~~~~~~~~~~anrwTDNI~~l~~~~~~  167 (188)
T PF03962_consen  139 KLKEEIKIAKEAANRWTDNIFSLKSYLKK  167 (188)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            57777888888889998888888776554

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=88.89  E-value=34  Score=36.15  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037         184 LGEELAGCQETLDTMLRQKEELRLQLAD  211 (224)
Q Consensus       184 l~~dL~~~re~~~kld~~~e~l~~qL~~  211 (224)
                      +...+..+...+..+......+..++..
T Consensus       827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~  854 (1047)
T PRK10246        827 IQQELAQLAQQLRENTTRQGEIRQQLKQ  854 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444433333

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=88.68  E-value=24  Score=34.17  Aligned_cols=74  Identities=19%  Similarity=0.230  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037         137 KKVMKLEALVQDKDCSIKSLEAKLEELS--HVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA  210 (224)
Q Consensus       137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~--~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~  210 (224)
                      .-...+..++...+..|.-+..+++...  ..-.++|.-|+.+.+--...+..|..+--....|.=+.+++..++-
T Consensus       355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~  430 (511)
T PF09787_consen  355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK  430 (511)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence            3344455555555555555555555554  3345666666666655555555555555555555555555555553

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=88.63  E-value=4.4  Score=30.60  Aligned_cols=64  Identities=25%  Similarity=0.379  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRT---EAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~---eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      .+..+.+.++..++.+..+...+.+.|.....   +.+.+..+...+..++..++..+...+.++..
T Consensus        33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~   99 (108)
T PF02403_consen   33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE   99 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555555555544444   34444444444444444444444444444433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>KOG4673|consensus

Probab=88.51  E-value=31  Score=35.13  Aligned_cols=132  Identities=16%  Similarity=0.152  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhhhhhhhhhhhhhHhH
Q psy5037          69 AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL--------------KFISQETAELENNNHSLDGEMKSCKNLLAE  134 (224)
Q Consensus        69 leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~--------------~~l~~e~~~lE~r~~~lE~e~nel~le~~~  134 (224)
                      ++..-..+..+-+|..+++..+..|+.--..+-+-+              ...+.-+..+|.++..+.+-.++++..+.-
T Consensus       490 ~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk  569 (961)
T KOG4673|consen  490 EEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQK  569 (961)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            333334555666777777777777765444433333              334444455555555555555555443311


Q ss_pred             HHHHHH--HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVM--KLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE  204 (224)
Q Consensus       135 ~~~ri~--~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~  204 (224)
                       .++..  ++..+=+.+-.++..+...|.......+.=|.   .++++...|+.-|.++...|..+-.++-.
T Consensus       570 -~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd---~~R~Ei~~LqrRlqaaE~R~eel~q~v~~  637 (961)
T KOG4673|consen  570 -ENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRED---MFRGEIEDLQRRLQAAERRCEELIQQVPE  637 (961)
T ss_pred             -HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence             12221  33333333444444444444444444444443   45678888999999999999887665543

>PRK10698 phage shock protein PspA; Provisional

Probab=88.40  E-value=16  Score=31.66  Aligned_cols=45  Identities=18%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037          14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTI   58 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l   58 (224)
                      ++...=|.-++.+|..++...-.+...-.+++..+..+.......
T Consensus        27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~   71 (222)
T PRK10698         27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEW   71 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444443333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=88.01  E-value=4.5  Score=37.13  Aligned_cols=92  Identities=20%  Similarity=0.337  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037          23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK  102 (224)
Q Consensus        23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle  102 (224)
                      ++..+..+......+.......+..|..+...+..+....+....+...++.++......+.+...+++.          
T Consensus       219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~----------  288 (344)
T PF12777_consen  219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG----------  288 (344)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh----------
Confidence            4445555444445555555555555555555555555555555555555555555555555555555544          


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037         103 HLKFISQETAELENNNHSLDGEMKSC  128 (224)
Q Consensus       103 ~~~~l~~e~~~lE~r~~~lE~e~nel  128 (224)
                          |..+..+|...+.+++.....+
T Consensus       289 ----L~~E~~RW~~~~~~l~~~~~~l  310 (344)
T PF12777_consen  289 ----LSGEKERWSEQIEELEEQLKNL  310 (344)
T ss_dssp             ----CHHHHHCCHCHHHHHHHHHHHH
T ss_pred             ----hcchhhhHHHHHHHHHHHhccc
Confidence                4445555555555555544443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.91  E-value=20  Score=32.36  Aligned_cols=109  Identities=20%  Similarity=0.290  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037          60 QELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-------LLKHLKFISQETAELENNNHSLDGEMKSCKNLL  132 (224)
Q Consensus        60 ~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~  132 (224)
                      .+|.+++..++.|+.+.+.--..|..++..+..--+....       |.-.-++|.+..+.+                  
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~l------------------   79 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENL------------------   79 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH------------------
Confidence            3566677777777777777777777666665544333322       222222222222222                  


Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA  189 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~  189 (224)
                         +....-+...+.-.+..+.-++.|++...+.+..|+.+|+.++.+-+..+....
T Consensus        80 ---ek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~  133 (307)
T PF10481_consen   80 ---EKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS  133 (307)
T ss_pred             ---HHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence               333334444555556666667777777777777777777777776666555444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG4360|consensus

Probab=87.78  E-value=29  Score=34.00  Aligned_cols=99  Identities=18%  Similarity=0.169  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037          31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQE  110 (224)
Q Consensus        31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e  110 (224)
                      -++..++...++.++..|...+.++.....++..+...+.+++.++.-.+-|+..+...+-.--.--+.|+.+.+.+...
T Consensus       204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk  283 (596)
T KOG4360|consen  204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK  283 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34445566666677777777777777777777777777777777776666666666655555444444555555555555


Q ss_pred             HHHHHhhhhhhhhhhhhhh
Q psy5037         111 TAELENNNHSLDGEMKSCK  129 (224)
Q Consensus       111 ~~~lE~r~~~lE~e~nel~  129 (224)
                      .-......|.++.+++.++
T Consensus       284 yAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  284 YAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            5555666666666665543

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=87.55  E-value=2.5  Score=27.65  Aligned_cols=41  Identities=17%  Similarity=0.306  Sum_probs=34.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037          15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHN   55 (224)
Q Consensus        15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~   55 (224)
                      -++++-+.|+.+.|.++..-+.+.++|..|...+....+..
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46788899999999999999999999999888887776643

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.51  E-value=17  Score=30.92  Aligned_cols=79  Identities=20%  Similarity=0.309  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD  211 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~  211 (224)
                      ..+.+....++.+|.++......++..|..+...+.+|......+...+.....++..+...|..+......+..+..+
T Consensus       106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~  184 (190)
T PF05266_consen  106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS  184 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555666667777766666777777777777777777777777777777777777777777777666666655543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.36  E-value=13  Score=29.70  Aligned_cols=66  Identities=12%  Similarity=0.215  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE   88 (224)
Q Consensus        23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~   88 (224)
                      |=.+.+.-...++.+...++++..+++.....+..++..++.++.++.............+..+..
T Consensus        43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~  108 (151)
T PF11559_consen   43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA  108 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555555555555555555555555555555555544444444444444433333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=86.98  E-value=19  Score=35.24  Aligned_cols=91  Identities=14%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHH
Q psy5037          31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER----LDLLKHLKF  106 (224)
Q Consensus        31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~----~~Lle~~~~  106 (224)
                      ..+++++..+........-.+..+.+.+...+...+.+...+..++......|.++++.+..-..-.    ..|++|+-+
T Consensus       419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas  498 (518)
T PF10212_consen  419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS  498 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4455566666666666666677777777777777777777777777777777777777665543322    225555555


Q ss_pred             HHHHHHHHHhhhhhh
Q psy5037         107 ISQETAELENNNHSL  121 (224)
Q Consensus       107 l~~e~~~lE~r~~~l  121 (224)
                      +.+.+..-.+.|+.+
T Consensus       499 mNeqL~~Q~eeI~~L  513 (518)
T PF10212_consen  499 MNEQLAKQREEIQTL  513 (518)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555544444433

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=86.87  E-value=38  Score=34.37  Aligned_cols=111  Identities=18%  Similarity=0.217  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHH
Q psy5037         106 FISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE-TQVQ--CCQEEKY  182 (224)
Q Consensus       106 ~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE-~EL~--~lk~er~  182 (224)
                      ++..-+..|+..+.++++.......++..+......|...+......+++.-..+..|++=|.+.- .+.+  .-..+|.
T Consensus       166 sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~  245 (739)
T PF07111_consen  166 SLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPERE  245 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHH
Confidence            444555566666666666655556666667777788888888888888777777888888775554 2222  3457889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy5037         183 RLGEELAGCQETLDTMLRQKEELRLQLADTENYK  216 (224)
Q Consensus       183 ~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~  216 (224)
                      .|...+..+++..+.|....+.|+..++++....
T Consensus       246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL  279 (739)
T PF07111_consen  246 ELLETVQHLQEDRDALQATAELLQVRVQSLTDIL  279 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987654

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.73  E-value=33  Score=34.98  Aligned_cols=7  Identities=14%  Similarity=0.169  Sum_probs=3.0

Q ss_pred             HHHHHHH
Q psy5037          20 IDRFKYE   26 (224)
Q Consensus        20 ~~~lr~q   26 (224)
                      +..||.+
T Consensus       545 ~~vlree  551 (717)
T PF10168_consen  545 TKVLREE  551 (717)
T ss_pred             HHHHHHH
Confidence            3444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=86.29  E-value=7.6  Score=29.76  Aligned_cols=62  Identities=24%  Similarity=0.260  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037         151 CSIKSLEAKLEELSHVTAQLETQVQCC--QEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT  212 (224)
Q Consensus       151 ~~i~~~e~qL~~l~~~~~~lE~EL~~l--k~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~  212 (224)
                      ..+......+.....++..+|.++..+  +++-..+.-.+..++-.+..+..+++.+++++.-+
T Consensus        35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            334444455555666667777777777  77777777777777777777777777777666544

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=86.25  E-value=20  Score=30.46  Aligned_cols=112  Identities=15%  Similarity=0.185  Sum_probs=58.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037          14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTE-AEDVKLQLQHYCCEVQRIEEILSK   92 (224)
Q Consensus        14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~e-leeLk~~~~~~~~E~~rlE~~i~~   92 (224)
                      ++..+-|..+..+|..++.....+.....+++..++................-.. -++|   ...+..+...++..+..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edL---Ar~al~~k~~~e~~~~~  102 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDL---AREALQRKADLEEQAER  102 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHH
Confidence            5666666666666666666666666666666666666666655555554443111 1111   12333444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037          93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSC  128 (224)
Q Consensus        93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel  128 (224)
                      .......+..++..|...+..++.++..+......+
T Consensus       103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l  138 (221)
T PF04012_consen  103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL  138 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444555555555555554444444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG1899|consensus

Probab=86.16  E-value=40  Score=33.97  Aligned_cols=107  Identities=17%  Similarity=0.183  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037          23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK  102 (224)
Q Consensus        23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle  102 (224)
                      +..-|.-+...++.+.=+++.|.++.+.-...+..|+.=|+.....+..-+..+|.----...+|...-.+=.|+.+|.=
T Consensus       109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL  188 (861)
T KOG1899|consen  109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL  188 (861)
T ss_pred             HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH
Confidence            34445557778888888888888888888888888888888888777776666665544456666666666666666666


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037         103 HLKFISQETAELENNNHSLDGEMKSCK  129 (224)
Q Consensus       103 ~~~~l~~e~~~lE~r~~~lE~e~nel~  129 (224)
                      ++-.+..+-...|.+.+..++.+.+++
T Consensus       189 kltalEkeq~e~E~K~R~se~l~qevn  215 (861)
T KOG1899|consen  189 KLTALEKEQNETEKKLRLSENLMQEVN  215 (861)
T ss_pred             HHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence            666666677777777777777666665

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.12  E-value=26  Score=31.93  Aligned_cols=92  Identities=24%  Similarity=0.217  Sum_probs=70.9

Q ss_pred             hhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         125 MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE  204 (224)
Q Consensus       125 ~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~  204 (224)
                      +..++-.+..++++-...----.++.+.-..+--|+.-|+..+.++++.+..++.+......++...+..|+.|...+..
T Consensus        79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~  158 (302)
T PF09738_consen   79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE  158 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555556666666555666677777778888888888888899999888888888888899999999999999999


Q ss_pred             HHHHHhchHHHH
Q psy5037         205 LRLQLADTENYK  216 (224)
Q Consensus       205 l~~qL~~~~~~~  216 (224)
                      |..+|.......
T Consensus       159 Lre~L~~rdeli  170 (302)
T PF09738_consen  159 LREQLKQRDELI  170 (302)
T ss_pred             HHHHHHHHHHHH
Confidence            888886655443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG1962|consensus

Probab=86.12  E-value=17  Score=31.60  Aligned_cols=74  Identities=12%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037          35 NRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETA  112 (224)
Q Consensus        35 ~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~  112 (224)
                      ..+-+++..+...+..-..    +..+.....+++.-++.++++...++..+...-..+.+..+.++.+|+.+-++..
T Consensus       130 ~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~  203 (216)
T KOG1962|consen  130 EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS  203 (216)
T ss_pred             HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3444455555555444322    3333333333333444444444443333333333333333333333333333333

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=85.98  E-value=53  Score=35.20  Aligned_cols=71  Identities=11%  Similarity=0.037  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQ---------HNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL   90 (224)
Q Consensus        20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~---------e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i   90 (224)
                      ++......+++....+++-++.+.++..|+....         -...++..+......+.++...+..+.+....+...+
T Consensus        60 ~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l  139 (1109)
T PRK10929         60 RKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSL  139 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3334444444455555555555555555553221         1355566666666667777777776666664443333

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=85.92  E-value=15  Score=33.17  Aligned_cols=76  Identities=14%  Similarity=0.242  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037         139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN  214 (224)
Q Consensus       139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~  214 (224)
                      |..|+.++.+....+++-+..|.+|+..+..|-+.--+--=.|.+.+-.|.++|.++-.|..-++++..-|..++-
T Consensus        70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDk  145 (305)
T PF15290_consen   70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDK  145 (305)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence            4455555555555555555555555555555555555555556777778888888888888888888877776643

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=85.92  E-value=12  Score=28.24  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          20 IDRFKYELNNLELERNRAQSEVRRLQ   45 (224)
Q Consensus        20 ~~~lr~ql~~lr~~r~~a~~E~~rlq   45 (224)
                      -..+..+++.++..+..+.++++.+.
T Consensus        38 ~r~l~~~~e~lr~~rN~~sk~I~~~~   63 (108)
T PF02403_consen   38 RRELQQELEELRAERNELSKEIGKLK   63 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            33444444444444444444444443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=85.90  E-value=11  Score=27.14  Aligned_cols=57  Identities=19%  Similarity=0.273  Sum_probs=21.1

Q ss_pred             HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         147 QDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKE  203 (224)
Q Consensus       147 ~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e  203 (224)
                      .+....|..+-..-..|....-.+..-++.|+.....+...+..+......+...++
T Consensus         8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~   64 (74)
T PF12329_consen    8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE   64 (74)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=85.88  E-value=11  Score=27.14  Aligned_cols=39  Identities=21%  Similarity=0.279  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQ  192 (224)
Q Consensus       154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~r  192 (224)
                      -.+...|-.|+..+..++..+..++.....+..++..++
T Consensus        29 l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~   67 (74)
T PF12329_consen   29 LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE   67 (74)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG0249|consensus

Probab=85.81  E-value=45  Score=34.15  Aligned_cols=70  Identities=7%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQH-------NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE   88 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e-------~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~   88 (224)
                      ...+|.++.....+.+.+..--+--+...+-...++       +..++..|......+-.+....+.....|.-++.
T Consensus        50 ~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~  126 (916)
T KOG0249|consen   50 MNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEP  126 (916)
T ss_pred             HHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhH
Confidence            344444444444444444444444444444433333       3334444444444444555555555555554443

>KOG4302|consensus

Probab=85.71  E-value=43  Score=33.85  Aligned_cols=139  Identities=15%  Similarity=0.121  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037          25 YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL  104 (224)
Q Consensus        25 ~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~  104 (224)
                      +-++++...+..+.++|...+..+..+...+.....-...+...---|+.++..+..-+..+....+..=++..+|..++
T Consensus        54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi  133 (660)
T KOG4302|consen   54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI  133 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555555444333222222211112225667777777767677777777777778888888


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhh-HhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037         105 KFISQETAELENNNHSLDGEMKSCKNL-LAESEKKVMKLEALVQDKDCSIKSLEAKLEEL  163 (224)
Q Consensus       105 ~~l~~e~~~lE~r~~~lE~e~nel~le-~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l  163 (224)
                      +.|..++..-++-....-++-+.+-++ +..+++++..|+.+.......+.+|...|-.+
T Consensus       134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l  193 (660)
T KOG4302|consen  134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSL  193 (660)
T ss_pred             HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888865544444444443443322 24455555555555555555555555554443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.66  E-value=23  Score=30.81  Aligned_cols=63  Identities=16%  Similarity=0.238  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          37 AQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        37 a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      ..+.+..+.++-..+..+...+..+++.++.....+...+.+...+|..++..|...+.-...
T Consensus        40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~  102 (251)
T PF11932_consen   40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE  102 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444444444444444444444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=85.55  E-value=38  Score=33.16  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=29.5

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG  185 (224)
Q Consensus       149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~  185 (224)
                      .......|+.||+.|+.-+..|-+.|...+++.+.++
T Consensus       478 L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  478 LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677888888888888888888888888877766

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF15294 Leu_zip: Leucine zipper

Probab=85.23  E-value=19  Score=32.52  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCS--IKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~--i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      |...+..|..|-..+-+|+.+++..++...-+...+...+.++..........  .-....+++.|...++.+..++...
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~  209 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA  209 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence            67777888888888888888888888888888877777777777733333221  0123334455555555544444433


Q ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         178 QE----EKYRLGEELAGCQETLDTMLRQKEELRL  207 (224)
Q Consensus       178 k~----er~~l~~dL~~~re~~~kld~~~e~l~~  207 (224)
                      -.    .-..+..+|..++......+........
T Consensus       210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aek  243 (278)
T PF15294_consen  210 LQDKESQQKALEETLQSCKHELLRVQEQLSLAEK  243 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchh
Confidence            33    3335556666666555555554443333

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=84.69  E-value=20  Score=29.23  Aligned_cols=48  Identities=23%  Similarity=0.345  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE  180 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e  180 (224)
                      .++.+=+..++++|..+...+..+...|..|......+..+++.+...
T Consensus        90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~  137 (145)
T COG1730          90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK  137 (145)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556888888888888888888888888888888888888888877653

>KOG4809|consensus

Probab=84.57  E-value=44  Score=33.06  Aligned_cols=108  Identities=18%  Similarity=0.255  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      +++.++.-..+..+|--++..+.+++.+..-.+..+++...+|..-+......+.+++--|+........|+..|...+.
T Consensus       329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~  408 (654)
T KOG4809|consen  329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN  408 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555556666666666666655555555566677777777777777777777777777777777777777776654


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         180 -------------EKYRLGEELAGCQETLDTMLRQKEELRL  207 (224)
Q Consensus       180 -------------er~~l~~dL~~~re~~~kld~~~e~l~~  207 (224)
                                   .+..+..+.+..+++|.+..+.++++=-
T Consensus       409 ~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLe  449 (654)
T KOG4809|consen  409 IEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLE  449 (654)
T ss_pred             hhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         3455666777777888887777776543

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=84.52  E-value=35  Score=31.84  Aligned_cols=82  Identities=12%  Similarity=0.141  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHHHhHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037         133 AESEKKVMKLEALVQDKDC-SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD  211 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~-~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~  211 (224)
                      ..++.+++.++..|..... ...++...+..+...+..+...+..++.+-.    .+.........|.+..+..+..++.
T Consensus       285 ~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~l~~~~~~~~~L~r~~~~~~~~y~~  360 (444)
T TIGR03017       285 KRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL----ELNRQRDEMSVLQRDVENAQRAYDA  360 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555443222 2222333444444444555544444433322    2222233344455555555555555


Q ss_pred             hHHHHHh
Q psy5037         212 TENYKTK  218 (224)
Q Consensus       212 ~~~~~~~  218 (224)
                      +-.+..+
T Consensus       361 ll~r~~e  367 (444)
T TIGR03017       361 AMQRYTQ  367 (444)
T ss_pred             HHHHHHH
Confidence            5544443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=84.33  E-value=32  Score=31.29  Aligned_cols=105  Identities=14%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         117 NNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD  196 (224)
Q Consensus       117 r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~  196 (224)
                      ++..+-..=..++..+..+-++-.....-+........+|...++.+++.+..||.+-..++...+.-...|..+-+...
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~  282 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ  282 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33334344456666667778888888888888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchHHHHHhhcC
Q psy5037         197 TMLRQKEELRLQLADTENYKTKESA  221 (224)
Q Consensus       197 kld~~~e~l~~qL~~~~~~~~~l~~  221 (224)
                      ..+..++.+..++..+..--..|..
T Consensus       283 ~~~~~~~~~~~k~~kLe~LcRaLQ~  307 (309)
T PF09728_consen  283 KLEKELEKLKKKIEKLEKLCRALQA  307 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999888887776655543

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.90  E-value=15  Score=27.03  Aligned_cols=63  Identities=29%  Similarity=0.268  Sum_probs=38.0

Q ss_pred             HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK  202 (224)
Q Consensus       140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~  202 (224)
                      ..|+.+|...-..|.-+...|++|+..=..+..+...++.-|+.|..+...++.....-..++
T Consensus         7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL   69 (79)
T PRK15422          7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL   69 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666666666666666666666666665555555555544444333

>PRK00736 hypothetical protein; Provisional

Probab=83.87  E-value=10  Score=26.77  Aligned_cols=46  Identities=22%  Similarity=0.376  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE  180 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e  180 (224)
                      +..|+..|+.++.-.+..|+.+...+..-.+.+..|...|+.+.+.
T Consensus         3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r   48 (68)
T PRK00736          3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER   48 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666665555555555555555555555555555555443

>PRK02793 phi X174 lysis protein; Provisional

Probab=83.86  E-value=12  Score=26.84  Aligned_cols=46  Identities=17%  Similarity=0.260  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE  180 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e  180 (224)
                      +..|+..|+.++.-.+..|+++...+..-.+.+..|...|+.+.+.
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r   51 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK   51 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666665555555555555555555555555555555443

>PRK00295 hypothetical protein; Provisional

Probab=83.85  E-value=11  Score=26.73  Aligned_cols=45  Identities=27%  Similarity=0.296  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      +..|+..|+.++.-.+..|+++...+..-.+.+..|...|+.+.+
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~   47 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK   47 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666665555555555555555555544

>KOG1853|consensus

Probab=83.62  E-value=33  Score=30.84  Aligned_cols=31  Identities=19%  Similarity=0.155  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037          93 KESERLDLLKHLKFISQETAELENNNHSLDG  123 (224)
Q Consensus        93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~  123 (224)
                      ++.+...+-..-+.++.-+..||..+.+|+-
T Consensus        96 Leddlsqt~aikeql~kyiReLEQaNDdLEr  126 (333)
T KOG1853|consen   96 LEDDLSQTHAIKEQLRKYIRELEQANDDLER  126 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3444444555555556666666666666653

>KOG0999|consensus

Probab=83.56  E-value=50  Score=32.88  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=13.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHH
Q psy5037          13 AKLATTEIDRFKYELNNLELER   34 (224)
Q Consensus        13 ~~~~~~e~~~lr~ql~~lr~~r   34 (224)
                      ....-+||.+|-+.|+++...+
T Consensus        10 ve~lr~eierLT~el~q~t~e~   31 (772)
T KOG0999|consen   10 VEKLRQEIERLTEELEQTTEEK   31 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777777777754443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=83.54  E-value=28  Score=30.01  Aligned_cols=138  Identities=17%  Similarity=0.149  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHh-------
Q psy5037          61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLA-------  133 (224)
Q Consensus        61 ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~-------  133 (224)
                      -|.+.+.........++.+..+-+.+-+.+...+.-..+|-.+|..+..-+..+=.+-..+-.-+....-.+.       
T Consensus        56 ~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~  135 (207)
T PF05010_consen   56 MIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQ  135 (207)
T ss_pred             HHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555555555566666666666666666666666655554433333333222222221       


Q ss_pred             ----HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         134 ----ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQ  201 (224)
Q Consensus       134 ----~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~  201 (224)
                          .+..++.....+|..   ....+...+..|+..+...+-.+..|...-.....+...+-..||.|=+.
T Consensus       136 aLK~hAeekL~~ANeei~~---v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k  204 (207)
T PF05010_consen  136 ALKAHAEEKLEKANEEIAQ---VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISK  204 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                112222222222221   22233444555555555555555555555555555555566666666443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=83.49  E-value=17  Score=27.88  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037          59 QQELEASRTEAEDV--KLQLQHYCCEVQRIEEILSKKESERLDL  100 (224)
Q Consensus        59 ~~ele~~e~eleeL--k~~~~~~~~E~~rlE~~i~~kE~E~~~L  100 (224)
                      ...+...+..++.|  ...+|...-+|..+.+.+......+..+
T Consensus        48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v   91 (106)
T PF10805_consen   48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV   91 (106)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33344444444444  4444444444444444444444444443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.36  E-value=56  Score=33.31  Aligned_cols=22  Identities=9%  Similarity=0.181  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHhHHhhHHH
Q psy5037         134 ESEKKVMKLEALVQDKDCSIKS  155 (224)
Q Consensus       134 ~~~~ri~~le~~I~e~~~~i~~  155 (224)
                      .+..++..+...|.+....+..
T Consensus       643 ~~~~~l~~l~~si~~lk~k~~~  664 (717)
T PF10168_consen  643 RMKDQLQDLKASIEQLKKKLDY  664 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=82.95  E-value=38  Score=31.06  Aligned_cols=159  Identities=19%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQEL-EASRTEAEDVKLQLQHYCCEVQRIEEILSKKES   95 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~el-e~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~   95 (224)
                      .++-..|+.+|+..+.+-..+..+|+.|...--.+......-+..| ..+-..|..++.+-..+.-.+.+=|+-+.    
T Consensus        33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~lt----  108 (310)
T PF09755_consen   33 QQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLT----  108 (310)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3455566666666666666666666666555444443332222221 12223333344333333333322222111    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhhhhHhHH-------HHHHHHHHHHHHhHHhhHH-HHHHHHHHHHHH
Q psy5037          96 ERLDLLKHLKFISQETAELENNNHS-LDGEMKSCKNLLAES-------EKKVMKLEALVQDKDCSIK-SLEAKLEELSHV  166 (224)
Q Consensus        96 E~~~Lle~~~~l~~e~~~lE~r~~~-lE~e~nel~le~~~~-------~~ri~~le~~I~e~~~~i~-~~e~qL~~l~~~  166 (224)
                        ..|...+..|..+-..+|+.+.. -++-++-+...+..+       .....-+.++..+++++++ +.+.-+..|.+.
T Consensus       109 --n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kq  186 (310)
T PF09755_consen  109 --NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQ  186 (310)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              23444445555555555544433 223333333333222       2222333444444444443 344445666666


Q ss_pred             HHHHHHHHHHHHHHH
Q psy5037         167 TAQLETQVQCCQEEK  181 (224)
Q Consensus       167 ~~~lE~EL~~lk~er  181 (224)
                      +..|+.+=+.|+..-
T Consensus       187 m~~l~~eKr~Lq~~l  201 (310)
T PF09755_consen  187 MDKLEAEKRRLQEKL  201 (310)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666665543

>TIGR02231 conserved hypothetical protein

Probab=82.76  E-value=17  Score=35.18  Aligned_cols=101  Identities=12%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA----SRTEAEDVKLQLQHYCCEVQRIEEILS   91 (224)
Q Consensus        16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~----~e~eleeLk~~~~~~~~E~~rlE~~i~   91 (224)
                      ..-.+..|+.+|..+...+..+..++..++..+.-+..-.......+..    ....+.++..-..-|..++..+-..+.
T Consensus        69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (525)
T TIGR02231        69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR  148 (525)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446666677776666666666666655555553332221111111111    022466777778888888888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          92 KKESERLDLLKHLKFISQETAELEN  116 (224)
Q Consensus        92 ~kE~E~~~Lle~~~~l~~e~~~lE~  116 (224)
                      ..+..+.++.+++..+..++..+.+
T Consensus       149 ~~~~~~~~~~~~l~~l~~~l~~l~~  173 (525)
T TIGR02231       149 EAERRIRELEKQLSELQNELNALLT  173 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8888888888887777777776654

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=82.68  E-value=5.6  Score=27.29  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=16.2

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV  174 (224)
Q Consensus       139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL  174 (224)
                      +.+++.++..+...|...+.+++.++..+..++.-+
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env   37 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENV   37 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PRK02119 hypothetical protein; Provisional

Probab=82.52  E-value=14  Score=26.48  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      +..|+..|+.++.-.+..|+++...+..-.+.+..|...|+.+.+
T Consensus         7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~   51 (73)
T PRK02119          7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN   51 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666666665555555555555555544

>KOG2991|consensus

Probab=82.10  E-value=38  Score=30.49  Aligned_cols=175  Identities=16%  Similarity=0.180  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD--LLKHLKFI  107 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~--Lle~~~~l  107 (224)
                      +...+..+...-.++......+.++...+-..+...+.+..++..+++.|.+...=.-.-+   -.-.-+  +..-|.++
T Consensus       106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~ql---R~~llDPAinl~F~rl  182 (330)
T KOG2991|consen  106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQL---RSTLLDPAINLFFLRL  182 (330)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH---HHHhhChHHHHHHHHH
Confidence            3455555555555666666666666666666666666666666666666655432111000   000000  44455555


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhh-----------hH-------------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037         108 SQETAELENNNHSLDGEMKSCKN-----------LL-------------AESEKKVMKLEALVQDKDCSIKSLEAKLEEL  163 (224)
Q Consensus       108 ~~e~~~lE~r~~~lE~e~nel~l-----------e~-------------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l  163 (224)
                      ..++...-.++..+..+++..+-           .+             .....||+.|+-++.=-...-+++.++-++|
T Consensus       183 K~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL  262 (330)
T KOG2991|consen  183 KGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEEL  262 (330)
T ss_pred             HHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence            55555555555555554443211           00             2335666666666666666666666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         164 SHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRL  207 (224)
Q Consensus       164 ~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~  207 (224)
                      -.=+.+|.+++.+.+.-.--|+..|...|..+-.+....+-+..
T Consensus       263 ~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq  306 (330)
T KOG2991|consen  263 YDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ  306 (330)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777766655554443

>KOG0247|consensus

Probab=81.93  E-value=47  Score=33.96  Aligned_cols=111  Identities=13%  Similarity=0.105  Sum_probs=80.8

Q ss_pred             HHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         112 AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCS--IKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA  189 (224)
Q Consensus       112 ~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~--i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~  189 (224)
                      -.|-+...+.+..+..++.+.+.+..+....+..|.-.+..  ++..+.....+...-.+++......+..+..+..-+.
T Consensus       537 ~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~~~~~~~  616 (809)
T KOG0247|consen  537 QMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILESTEYEEEIEALDQELEEQKMELQQKFSEKKKAMAKVRGILA  616 (809)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhHHHHHHHHhhhHHHHhhccchhHHHhhhccccC
Confidence            55666666667777777777777777777777777666665  5555555566666666777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCCC
Q psy5037         190 GCQETLDTMLRQKEELRLQLADTENYKTKESAPM  223 (224)
Q Consensus       190 ~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~~  223 (224)
                      ....+| .+-+....++..|...++....+.++|
T Consensus       617 ~t~~~~-~v~~~~~~~~~~l~~~~e~l~~~~~~i  649 (809)
T KOG0247|consen  617 NTSPEC-SVAAKLLELQSKLWFKDEKLKHLTAII  649 (809)
T ss_pred             CCchhh-hHHHHHHHHHHHhcccHHHHHHhhccc
Confidence            777788 777777788888889898888888765

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.68  E-value=17  Score=26.21  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037          29 NLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVK   73 (224)
Q Consensus        29 ~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk   73 (224)
                      .+..+..-|..-|.-||..++++...+..+..+-.......+.|.
T Consensus         8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~   52 (79)
T COG3074           8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE   52 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence            344444445555555555555544444444444433333333333

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=81.52  E-value=11  Score=26.51  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEK  181 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er  181 (224)
                      ..|+..|+.++.-.+..|+.+...+..-...+..|+..|+.+.+.-
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl   48 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL   48 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555554444444444444444444444444444444433

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=81.30  E-value=23  Score=27.48  Aligned_cols=55  Identities=16%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK  154 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~  154 (224)
                      |...+.........|=..-..|.+-.+.++-+..+...|+++|+.+|.+....++
T Consensus        21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le   75 (107)
T PF09304_consen   21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE   75 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333344444444444444433333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function

Probab=81.23  E-value=15  Score=29.51  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELE  115 (224)
Q Consensus        36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE  115 (224)
                      .+..+.++|..--.............-......+.+....+..|-.-|.+++..+..|+.|+..|..+++.+...-..||
T Consensus        49 ~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le  128 (131)
T PF04859_consen   49 AVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE  128 (131)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45556666655555544444444444445667788888888999999999999999999999888888888877777776


Q ss_pred             hhh
Q psy5037         116 NNN  118 (224)
Q Consensus       116 ~r~  118 (224)
                      .|+
T Consensus       129 krl  131 (131)
T PF04859_consen  129 KRL  131 (131)
T ss_pred             ccC
Confidence            653

>KOG2991|consensus

Probab=81.12  E-value=42  Score=30.27  Aligned_cols=139  Identities=14%  Similarity=0.172  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL   98 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~   98 (224)
                      .=.+|++|+..+.++-..+........-.+.+++.-++.+.....-+-..+..+=-. -.+.....|+.+.+......+.
T Consensus       116 se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD-PAinl~F~rlK~ele~tk~Kle  194 (330)
T KOG2991|consen  116 SEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD-PAINLFFLRLKGELEQTKDKLE  194 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            335677777766665555555555555555555444444443332222111110000 0112233344444444444443


Q ss_pred             H-------------------HHHHHHHHHHHHHHH-----HhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHH
Q psy5037          99 D-------------------LLKHLKFISQETAEL-----ENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK  154 (224)
Q Consensus        99 ~-------------------Lle~~~~l~~e~~~l-----E~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~  154 (224)
                      +                   |+...+.|-.+-..+     ++||+.|+.++.=-+-.-+.++..-..|-.-+.++...++
T Consensus       195 e~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVE  274 (330)
T KOG2991|consen  195 EAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVE  274 (330)
T ss_pred             HHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHh
Confidence            3                   888888888877766     7888888777654333333333333333333333333333


Q ss_pred             HHHH
Q psy5037         155 SLEA  158 (224)
Q Consensus       155 ~~e~  158 (224)
                      .+.+
T Consensus       275 gmqs  278 (330)
T KOG2991|consen  275 GMQS  278 (330)
T ss_pred             cchh
Confidence            3333

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=80.99  E-value=16  Score=25.47  Aligned_cols=44  Identities=14%  Similarity=0.360  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI   86 (224)
Q Consensus        43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl   86 (224)
                      .++..|..+...+..+...|.+++....+|..++..+..+|..+
T Consensus        15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~   58 (61)
T PF08826_consen   15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556666666666666666666666666666666666666554

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=80.89  E-value=6.3  Score=36.73  Aligned_cols=28  Identities=18%  Similarity=0.342  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKS  127 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~ne  127 (224)
                      |..++..+.+.+..+|+++..++..+..
T Consensus       142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~  169 (370)
T PF02994_consen  142 LNSRIDELEERISELEDRIEEIEQAIKE  169 (370)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence            3333344444444444444444443333

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=80.83  E-value=24  Score=31.69  Aligned_cols=73  Identities=16%  Similarity=0.264  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL  114 (224)
Q Consensus        42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~l  114 (224)
                      ..++.-+..+...++.++..+..+..+-..|..+++.-..|+.|....+..+.+-+=.-+++|+.+..++..+
T Consensus       165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l  237 (267)
T PF10234_consen  165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL  237 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=80.54  E-value=30  Score=28.25  Aligned_cols=60  Identities=25%  Similarity=0.372  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC   81 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~   81 (224)
                      +.+|..|+.|+..++.....+..+...|...+.     +..+...|..+..++..|..+++.+.+
T Consensus        78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   78 DAEIKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444444444444333331     133444455555555555555544443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=80.38  E-value=23  Score=26.76  Aligned_cols=33  Identities=15%  Similarity=0.353  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037          40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDV   72 (224)
Q Consensus        40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeL   72 (224)
                      ....++.++..+......+...+.+...-+++|
T Consensus         7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL   39 (105)
T cd00632           7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEEL   39 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444443333333

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PRK01203 prefoldin subunit alpha; Provisional

Probab=80.29  E-value=29  Score=27.88  Aligned_cols=39  Identities=21%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE  171 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE  171 (224)
                      .+...++..+..++...+..|.....++..+...+..|-
T Consensus        83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445778888888888887777777777777777666665

>PRK04406 hypothetical protein; Provisional

Probab=80.18  E-value=18  Score=26.09  Aligned_cols=42  Identities=17%  Similarity=0.328  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      ..|+..|+.+|.-.+..|+++...+..-.+.+..|...|+.+
T Consensus        10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L   51 (75)
T PRK04406         10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV   51 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 37/206 (17%), Positives = 92/206 (44%)

Query: 6    NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
             K+ +++      +++  +     L+LE+  A  ++++++ ++  M   N  + +E +  
Sbjct: 950  KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009

Query: 66   RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
                 D+   L     + + + ++ +K ES   +L   LK   +   ELE     L+GE 
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 126  KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
                  +AE + ++ +L+A +  K+  +++  A+LE+ +        +++  +     L 
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 186  EELAGCQETLDTMLRQKEELRLQLAD 211
            E+L   +   +   +QK +L  +L  
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEA 1155

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.6 bits (147), Expect = 5e-11
 Identities = 34/215 (15%), Positives = 79/215 (36%)

Query: 10   EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
            E         I+  +     L+ E+ + Q ++  L+ +L +       +Q E   +  + 
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 70   EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
            + ++  +     +  ++ +     E    DL  +L    ++   L    +  +  +   +
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045

Query: 130  NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
              L + EK   +LE + +  +     L  ++ EL    A+L+ Q+   +EE       L 
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105

Query: 190  GCQETLDTMLRQKEELRLQLADTENYKTKESAPMA 224
                  +  L++  EL   ++D +     E A   
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.6 bits (147), Expect = 6e-11
 Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 3/208 (1%)

Query: 6    NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
               ++ + K    +I   + + N L  ER   +  V  L T L +  +    + +     
Sbjct: 978  KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037

Query: 66   RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
             +   +++++L+      Q +E+I  K E E  DL + +  +  + AEL+      + E+
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097

Query: 126  KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
            ++    L +   +       +++ +  I  L+  LE       + E Q +   EE   L 
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157

Query: 186  EELAGCQETLDTMLRQKEELRLQLADTE 213
             EL   ++TLDT   Q+E       D +
Sbjct: 1158 TEL---EDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 34/195 (17%), Positives = 80/195 (41%), Gaps = 7/195 (3%)

Query: 19   EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH 78
            E+     EL   +  + +A++E++ L+ +   + +    +Q++L+A      + +     
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 79   YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK 138
               + Q +EEIL  +   R++  +      + + +L+     +  +M   +  L E E  
Sbjct: 918  LAAKKQELEEIL-HEMEARIEEEE------ERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 139  VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198
              KL+      D  IK +E  +  +     +L  + +  +E    L   LA  +E    +
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 199  LRQKEELRLQLADTE 213
             + K +    +++ E
Sbjct: 1031 TKLKNKHESMISELE 1045

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 6    NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
            + +   E  L   ++          E  R R  ++ + L+  L++M       ++  +  
Sbjct: 887  HTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL 946

Query: 66   RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
            + E + ++ Q+     +++  E    K + E++     +K +  +   +E+ N+ L  E 
Sbjct: 947  QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006

Query: 126  KSCKNL-------LAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178
            K  +         LAE E+K   L  L    +  I  LE +L++      +LE   +  +
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 179  EEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESA 221
             E   L E++A  Q  +  +  Q  +   +L         E++
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 28/162 (17%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 59   QQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118
            ++E++A   E +  K + Q    E++ +E+  ++   E+  L + L+  ++  AE E   
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 119  HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178
              L  + +  + +L E E ++ + E   Q      K ++ ++ +L     + E   Q  Q
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 179  EEKY-------RLGEELAGCQETLDTMLRQKEELRLQLADTE 213
             EK        ++ +++   ++  + + ++++ L  +++D  
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 32/196 (16%), Positives = 75/196 (38%), Gaps = 4/196 (2%)

Query: 22   RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81
            R KY++   E +    Q  VR     ++        +  +    R  A+    +L+    
Sbjct: 855  RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEAR 914

Query: 82   EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK 141
             V+R +++    E++ + L + +   ++E   L    ++L+    +    L    +++  
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974

Query: 142  LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML-- 199
             E   ++    + SL+ ++ +L     Q +T+ +  +E   +   E       L      
Sbjct: 975  SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034

Query: 200  --RQKEELRLQLADTE 213
               +KEEL  ++ D  
Sbjct: 1035 LKTEKEELNRRIHDQA 1050

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 15/198 (7%)

Query: 9    SEREAKLATTEIDRFKYE---LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
                  +A  E+ + K E   +   +      ++++ +LQ ++ + N+      + L   
Sbjct: 895  CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY----KSLLEK 950

Query: 66   RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
                E           +++   E L   E E  +    +  + +E A+L    H    E 
Sbjct: 951  MNNLEI---TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 126  KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
            K    +   ++K   + E LV +       L+ + EEL+        ++   +  + +L 
Sbjct: 1008 K---TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEKKLV 1062

Query: 186  EELAGCQETLDTMLRQKE 203
            EE    +  L+    + +
Sbjct: 1063 EETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 28/224 (12%)

Query: 8    RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
            +       +       +  L  +   R      +  LQ     M       + ++EA   
Sbjct: 859  QMMLREHKSIIIQKHVRGWLARVHYHRTLK--AIVYLQCCYRRMMAKRELKKLKIEARSV 916

Query: 68   EA-EDVKLQLQHYCCEVQ-RIEEI-----------------LSKKESERLDLLKHLKFIS 108
            E  + + + L++   ++Q +I+E                   S +  +    ++ L+   
Sbjct: 917  ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 109  QETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA 168
            +E     N   SL  E+   +  L +++ +   +E          + L ++L+E      
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE---QNT 1033

Query: 169  QLETQVQCCQEEKYRLGEELAGCQETLDTMLR-QKEELRLQLAD 211
             L+T+    +E   R+ ++     ET++  L  + ++L L L D
Sbjct: 1034 LLKTEK---EELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 7/156 (4%)

Query: 59   QQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118
               +   RT    V LQ  +     +R  + L K E+  ++  K L         LEN  
Sbjct: 878  LARVHYHRTLKAIVYLQCCYRRMMAKRELKKL-KIEARSVERYKKLH------IGLENKI 930

Query: 119  HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178
              L  ++           +K+  LE     +   ++S   +L            +V   Q
Sbjct: 931  MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990

Query: 179  EEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
            EE  +L +EL   Q    T+    ++ + +     +
Sbjct: 991  EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 9/192 (4%)

Query: 26   ELNNLELERNRAQSEVRRLQTELYDMNQ---HNMTIQQELEASRTEAEDVKLQLQHYCCE 82
                +       Q+ +R              H   I Q+              L+     
Sbjct: 834  RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 83   VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKL 142
                  +++K+E      LK LK  ++     +  +  L+ ++   +  + E  K+   L
Sbjct: 894  QCCYRRMMAKRE------LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 143  EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK 202
               + + + +  +   KL          E + +        L EE+A  ++ L     +K
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 203  EELRLQLADTEN 214
            + +       ++
Sbjct: 1008 KTIEEWADKYKH 1019

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.26
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.24
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.63
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.59
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.45
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.36
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.82
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.6
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.59
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.57
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.14
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.87
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	96.87
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.86
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.81
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.79
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.79
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.78
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.76
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.74
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	96.66
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	96.65
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.45
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	96.36
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	96.32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.98
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	95.79
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.75
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	95.53
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.32
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.23
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	95.21
3bas_A	89	Myosin heavy chain, striated muscle/general contro	95.01
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	94.88
3bas_A	89	Myosin heavy chain, striated muscle/general contro	94.82
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	94.76
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	94.72
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.67
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	94.65
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	94.62
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.47
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	94.35
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.14
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	94.07
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	94.07
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.91
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	93.72
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	93.69
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	93.22
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	93.04
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	92.87
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.8
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	92.63
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	92.07
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	91.98
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	91.93
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	91.29
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	91.24
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	90.28
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	90.13
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.29
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	88.75
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	88.54
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	88.31
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	87.94
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	87.94
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	87.7
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	87.58
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.75
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	86.63
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	86.4
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	86.37
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	84.44
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.2
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	83.51
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	82.89
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	82.75
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	81.97
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	81.86
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	81.66
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	81.66
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	81.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	80.75
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	80.45

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.26  E-value=5.4e-08  Score=80.95  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=30.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy5037         149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYK  216 (224)
Q Consensus       149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~  216 (224)
                      ....+..+...+..+...+..++..+..+......+...+..+...+..+......+...+..+....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (284)
T 1c1g_A          200 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY  267 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444444444444444444444444443333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.24  E-value=8.7e-08  Score=79.69  Aligned_cols=45  Identities=13%  Similarity=0.243  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037          17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQE   61 (224)
Q Consensus        17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~e   61 (224)
                      ..++..+..+++.+......+...+..+...+..+......+...
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   56 (284)
T 1c1g_A           12 KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDE   56 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444443333333333333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.63  E-value=1.3e-07  Score=97.30  Aligned_cols=47  Identities=19%  Similarity=0.156  Sum_probs=22.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037          10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNM   56 (224)
Q Consensus        10 ~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~   56 (224)
                      .++......++..++..|..+...+..+...+..++..+..+.....
T Consensus       856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~  902 (1184)
T 1i84_S          856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ  902 (1184)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555444444444444444444444433333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.59  E-value=9.8e-08  Score=98.16  Aligned_cols=14  Identities=21%  Similarity=0.119  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q psy5037          24 KYELNNLELERNRA   37 (224)
Q Consensus        24 r~ql~~lr~~r~~a   37 (224)
                      ..++..+...+..+
T Consensus       884 e~~l~~Le~e~~~l  897 (1184)
T 1i84_S          884 EQKHTQLCEEKNLL  897 (1184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.45  E-value=0.0001  Score=63.62  Aligned_cols=63  Identities=14%  Similarity=0.056  Sum_probs=40.3

Q ss_pred             hhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         124 EMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGE  186 (224)
Q Consensus       124 e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~  186 (224)
                      +++.+..++..+..++..++..|.+.+..++.++..+..+...+..+..+|...+.+.+....
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~  153 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK  153 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566666666666666777777777777766666666666666666666655544443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.36  E-value=0.00014  Score=62.78  Aligned_cols=155  Identities=14%  Similarity=0.163  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037          25 YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL  104 (224)
Q Consensus        25 ~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~  104 (224)
                      .+|+.++..+..+-.++..++..+..+......+...+.+...++..++..+..+...+.+.+..+....     =..+|
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE~   92 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SEREL   92 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHH
Confidence            3444455555555555555555555555544444444444444444444444444444444444443211     23455


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         105 KFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL  184 (224)
Q Consensus       105 ~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l  184 (224)
                      ..+..++..+..++..++.++.++.-.++.+...+..+...+......+.....   .+...++.+..++..+..+|..+
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~---~~~~~~~e~~~e~~~l~~~r~~l  169 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES---LVENEVKNIKETQQIIFKKKEDL  169 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666666666555555444444444444444444433333333222   23334455555555555555555


Q ss_pred             HHH
Q psy5037         185 GEE  187 (224)
Q Consensus       185 ~~d  187 (224)
                      ...
T Consensus       170 ~~~  172 (256)
T 3na7_A          170 VEK  172 (256)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.82  E-value=0.0027  Score=49.47  Aligned_cols=117  Identities=18%  Similarity=0.131  Sum_probs=87.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037          83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE  162 (224)
Q Consensus        83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~  162 (224)
                      +++.+..+..++.++..|.+.+.........++..+..+..+.|.+...+.+-.+-.++.+.........-..++.+|..
T Consensus         8 ~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e   87 (129)
T 2fxo_A            8 SAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKE   87 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777777777777777777777788888888888888888887776777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         163 LSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML  199 (224)
Q Consensus       163 l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld  199 (224)
                      +...+...++....|...+..+..++..++..++.+.
T Consensus        88 l~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           88 MNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777776666666553

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.60  E-value=0.022  Score=47.18  Aligned_cols=102  Identities=16%  Similarity=0.134  Sum_probs=46.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037          88 EILSKKESERLDLLKHLKFISQETAELENNNHSLDGE----MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEEL  163 (224)
Q Consensus        88 ~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e----~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l  163 (224)
                      ..|...++.+.+|......+..+++.|=.++.+.-++    +|.+.-++..+...+..+...|-+.+.+-..++.+.-..
T Consensus        49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~  128 (189)
T 2v71_A           49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT  128 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3344444444444444444444444444444444433    444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         164 SHVTAQLETQVQCCQEEKYRLGEELA  189 (224)
Q Consensus       164 ~~~~~~lE~EL~~lk~er~~l~~dL~  189 (224)
                      ..++..++..+-.+-+...=|..+|.
T Consensus       129 ~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A          129 IMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.59  E-value=0.023  Score=47.17  Aligned_cols=131  Identities=20%  Similarity=0.221  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy5037          16 ATTEIDRFKYELNNLELERNRAQSEVRRLQ----TELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCE----VQRIE   87 (224)
Q Consensus        16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq----~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E----~~rlE   87 (224)
                      -......+.++++++...-++....-+-|.    .+|..+...+..+...+..+..+++.++.+......+    +..+.
T Consensus        15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq   94 (189)
T 2v71_A           15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLE   94 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566677777766666666665544    4445555566666666666666666666666666555    55555


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037          88 EILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALV  146 (224)
Q Consensus        88 ~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I  146 (224)
                      ..|...-..+..|...++.|...-+++|+..+.+.+-+..+.--+-.+-++++-|+.++
T Consensus        95 ~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El  153 (189)
T 2v71_A           95 DDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL  153 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555554455555555444445544444444444333333333334444443333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.57  E-value=0.021  Score=46.01  Aligned_cols=130  Identities=16%  Similarity=0.226  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037          82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLE  161 (224)
Q Consensus        82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~  161 (224)
                      ||+++++.+.+-+.-...-..++..|..++..+-+++.+++.--....-.-..+.++|..|...+.+.+..-+.-+..+.
T Consensus        22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~  101 (155)
T 2efr_A           22 EVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT  101 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444443332221111244566777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037         162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD  211 (224)
Q Consensus       162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~  211 (224)
                      .|.+.+..++.+|...+.....+..+|..+=.....+.+....|+..++.
T Consensus       102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~  151 (155)
T 2efr_A          102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR  151 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            77777777777777777777777776666655555555555555555443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.14  E-value=0.056  Score=41.83  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=12.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELY   49 (224)
Q Consensus        16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~   49 (224)
                      ..-++..|+-.|......+..+...+..+.....
T Consensus        18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~   51 (129)
T 2fxo_A           18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKN   51 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444443333333333333333333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.87  E-value=0.056  Score=40.22  Aligned_cols=92  Identities=15%  Similarity=0.071  Sum_probs=65.5

Q ss_pred             hhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML  199 (224)
Q Consensus       120 ~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld  199 (224)
                      .+...++.++++...+..+...++..+......-...+..+.+|++++.-++.+|..+...-......|...........
T Consensus         6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE   85 (101)
T 3u1c_A            6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhc
Q psy5037         200 RQKEELRLQLAD  211 (224)
Q Consensus       200 ~~~e~l~~qL~~  211 (224)
                      +.+..|++.+.-
T Consensus        86 ~ev~~L~Rriql   97 (101)
T 3u1c_A           86 SEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777766543

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=96.87  E-value=0.024  Score=45.12  Aligned_cols=139  Identities=20%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5037          39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN  118 (224)
Q Consensus        39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~  118 (224)
                      ..|.-+.++|+...........+|+......++-...+..+-..-..-+..|..++....+....+.....-.+.+..++
T Consensus         3 Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl   82 (147)
T 2b9c_A            3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL   82 (147)
T ss_dssp             --------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34566778888888888888888888888888877777776666666666666666666665555555555555555555


Q ss_pred             hhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         119 HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC  177 (224)
Q Consensus       119 ~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l  177 (224)
                      .-+++++.-..-....+..++..|+..+....+.+++++..=.....+...++..++.|
T Consensus        83 ~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L  141 (147)
T 2b9c_A           83 VIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL  141 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            55555555444344555666677777777777777777776666666677776666554

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.86  E-value=0.13  Score=41.33  Aligned_cols=75  Identities=12%  Similarity=0.163  Sum_probs=31.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5037          51 MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM  125 (224)
Q Consensus        51 ~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~  125 (224)
                      +.+++.......+.++..+.+|...++.+..-+..++.-=..-...-....+++..|...+...|.|+..++-.+
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv  100 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV  100 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444445555555555444444433322222223344444444444444444444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.81  E-value=0.057  Score=55.29  Aligned_cols=16  Identities=25%  Similarity=0.214  Sum_probs=6.0

Q ss_pred             HHHhhhhhhhhhhhhh
Q psy5037         113 ELENNNHSLDGEMKSC  128 (224)
Q Consensus       113 ~lE~r~~~lE~e~nel  128 (224)
                      .++.++.+++.++..+
T Consensus       981 ~~~~~v~~L~~e~~~l  996 (1080)
T 2dfs_A          981 NATNRVLSLQEEIAKL  996 (1080)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.79  E-value=0.98  Score=51.11  Aligned_cols=185  Identities=11%  Similarity=0.112  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037          30 LELERNRAQSEVRRLQTELY---DMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF  106 (224)
Q Consensus        30 lr~~r~~a~~E~~rlq~dL~---~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~  106 (224)
                      +..++.++.....|++.=|+   .+...+..++.+|...+..++.-..+......+|..-...-+.+...   ....-..
T Consensus      1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~---v~~~~~~ 1984 (3245)
T 3vkg_A         1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKD---ARELQVQ 1984 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            46666777777777764333   34455555555555555555555554444444443322222211111   1111122


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy5037         107 ISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL--  184 (224)
Q Consensus       107 l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l--  184 (224)
                      +..+......+-..++.++++.. +..=++.+++.++.+....+......+.+|.++...+..|..++..+..++..+  
T Consensus      1985 ~~~~~~ei~~~k~~~e~dL~~A~-Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A         1985 LDVRNKEIAVQKVKAYADLEKAE-PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22223333333344444444421 112224455555555555555555555555555555555555555544444444  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037         185 -----GEELAGCQETLDTMLRQKEELRLQLADTENYKTK  218 (224)
Q Consensus       185 -----~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~  218 (224)
                           ..-|..+..+...|.+.+.+=..++..+......
T Consensus      2064 e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A         2064 ESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence                 4445555666777777777776666666554443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.79  E-value=0.77  Score=51.93  Aligned_cols=92  Identities=11%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         107 ISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGE  186 (224)
Q Consensus       107 l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~  186 (224)
                      ++.++..++..+..+...++..+-.+..++.+++.++.+........+.++.+++....++..-+.=+.+|-+|+.+=..
T Consensus      2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A         2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence            34555566666666666666666666666666666666666666666666677776666666666667777777766666


Q ss_pred             HHHHHHHHHHHH
Q psy5037         187 ELAGCQETLDTM  198 (224)
Q Consensus       187 dL~~~re~~~kl  198 (224)
                      .+.........|
T Consensus      2092 ~~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2092 QSENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            666655555444

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.76  E-value=0.078  Score=39.43  Aligned_cols=92  Identities=15%  Similarity=0.200  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHH
Q psy5037          57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESE  136 (224)
Q Consensus        57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~  136 (224)
                      .|..++..+..+.++.......+...+..++.....++.++..|...+.-+..+++.++.++..+...+.........+.
T Consensus         6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE   85 (101)
T 3u1c_A            6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555556666666666665555555555555555444444433334444


Q ss_pred             HHHHHHHHHHHh
Q psy5037         137 KKVMKLEALVQD  148 (224)
Q Consensus       137 ~ri~~le~~I~e  148 (224)
                      ..+++|.++|+-
T Consensus        86 ~ev~~L~Rriql   97 (101)
T 3u1c_A           86 SEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            445555554443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.74  E-value=0.11  Score=41.71  Aligned_cols=105  Identities=18%  Similarity=0.235  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037          68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENN-NHSLDGEMKSCKNLLAESEKKVMKLEALV  146 (224)
Q Consensus        68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r-~~~lE~e~nel~le~~~~~~ri~~le~~I  146 (224)
                      ++..+..++..+..++.++-..+..--.-+.........+..|+++|=.. +..+..=.+..+.+...++.|+..|+.++
T Consensus        45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql  124 (154)
T 2ocy_A           45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL  124 (154)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555554444333333333333333333333333211 11122222334666677788888888888


Q ss_pred             HhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037         147 QDKDCSIKSLEAKLEELSHVTAQLET  172 (224)
Q Consensus       147 ~e~~~~i~~~e~qL~~l~~~~~~lE~  172 (224)
                      .+....+..++.|+..|..-+..|+.
T Consensus       125 ~e~~~~l~~lq~ql~~LK~v~~~m~~  150 (154)
T 2ocy_A          125 REKDTLLDTLTLQLKNLKKVMHSLDN  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            88888888888888888776554443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=96.66  E-value=0.097  Score=38.78  Aligned_cols=91  Identities=15%  Similarity=0.099  Sum_probs=67.6

Q ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLR  200 (224)
Q Consensus       121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~  200 (224)
                      +.-.++.++++...+.++...++..+......-...+..+.++++.+.-++.++..+...-......|...........+
T Consensus         7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~   86 (101)
T 3u59_A            7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667777777777777777777777777777777777788888778888777777777777777777777777777


Q ss_pred             HHHHHHHHHhc
Q psy5037         201 QKEELRLQLAD  211 (224)
Q Consensus       201 ~~e~l~~qL~~  211 (224)
                      .+..|++.+--
T Consensus        87 evasLnRriql   97 (101)
T 3u59_A           87 EVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776643

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=96.65  E-value=0.09  Score=38.97  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHH
Q psy5037          57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESE  136 (224)
Q Consensus        57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~  136 (224)
                      .|..++..+..+.++.......+-..+..++.....++.++..|...+..+..+++..+.++..+...+.........+.
T Consensus         6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE   85 (101)
T 3u59_A            6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555555555555555555555555555444444444455


Q ss_pred             HHHHHHHHHHHh
Q psy5037         137 KKVMKLEALVQD  148 (224)
Q Consensus       137 ~ri~~le~~I~e  148 (224)
                      ..+++|.++|+-
T Consensus        86 ~evasLnRriql   97 (101)
T 3u59_A           86 AEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.45  E-value=0.28  Score=39.86  Aligned_cols=120  Identities=13%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037          92 KKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE  171 (224)
Q Consensus        92 ~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE  171 (224)
                      ..+.-+.+|-+.+..|...-..|+..+.++.+.+..-+..+.-..+.+.+++.       .|.++...+..++.+...+.
T Consensus        45 ~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~-------ri~~L~~El~~~k~~~~k~~  117 (168)
T 3o0z_A           45 QLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQA-------RITSLQEEVKHLKHNLEKVE  117 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555544444333444444433       44444455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037         172 TQVQCCQEEKYRLGEELAGCQ-ETLDTMLRQKEELRLQLADTENYKTK  218 (224)
Q Consensus       172 ~EL~~lk~er~~l~~dL~~~r-e~~~kld~~~e~l~~qL~~~~~~~~~  218 (224)
                      .+-+.|++....+..+.+++. ++-.+|..--.++.........++++
T Consensus       118 ~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~~Tkar  165 (168)
T 3o0z_A          118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKAR  165 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555554444444444443 22334444445555555555554443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.36  E-value=0.13  Score=39.75  Aligned_cols=69  Identities=20%  Similarity=0.187  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELR  206 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~  206 (224)
                      +...+++|+..|.+.+.   .|..++..+...+..||.+|..++.+-.....++..+=.-...||-.+.+-.
T Consensus        55 l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR  123 (129)
T 3tnu_B           55 VKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555544433   4667778888888888888888888888888888777777777776655443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.32  E-value=0.1  Score=40.38  Aligned_cols=72  Identities=11%  Similarity=0.083  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRL  207 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~  207 (224)
                      .++...+++|+..|.+.+.   .|..++..+...+..+|.+|..++.+-.....++..+=.-...||-.+.+-+.
T Consensus        55 ~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk  126 (131)
T 3tnu_A           55 QSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555555555554443   46677888888888888888888888888888888777777777766655443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.98  E-value=0.046  Score=51.25  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQE  193 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re  193 (224)
                      ..+.+.+..........+..+..++..+......++..+...+.....+..+...++.
T Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~  572 (597)
T 3oja_B          515 KERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ  572 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444444333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=95.79  E-value=0.43  Score=36.17  Aligned_cols=102  Identities=16%  Similarity=0.128  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q psy5037          94 ESERLDLLKHLKFISQETAELENNNHSLDGE----MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQ  169 (224)
Q Consensus        94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e----~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~  169 (224)
                      ++...+|......|.-+.+.|-.++.+...+    +|.++.++..++.....+...|-+.+.+=.+|+.+--....++..
T Consensus         2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD   81 (111)
T 2v66_B            2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED   81 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence            4556778888888888888888888887654    666888888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         170 LETQVQCCQEEKYRLGEELAGCQETL  195 (224)
Q Consensus       170 lE~EL~~lk~er~~l~~dL~~~re~~  195 (224)
                      |+..+-..-+...=|..+|..-..+.
T Consensus        82 ~E~k~n~aiErnalLE~El~EKe~L~  107 (111)
T 2v66_B           82 FEQRLNQAIERNAFLESELDEKESLL  107 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888888887544443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.75  E-value=0.63  Score=37.73  Aligned_cols=108  Identities=12%  Similarity=0.103  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037          22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL  101 (224)
Q Consensus        22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll  101 (224)
                      +||.+...+......+..-++-|++.+..+......|..++-.+...++.=+..+...-..+..+++.|..+..++..+.
T Consensus        31 rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k  110 (168)
T 3o0z_A           31 RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK  110 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555666666655555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037         102 KHLKFISQETAELENNNHSLDGEMKSCK  129 (224)
Q Consensus       102 e~~~~l~~e~~~lE~r~~~lE~e~nel~  129 (224)
                      ..+..+..+...|-.++.+++-+.+++.
T Consensus       111 ~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A          111 HNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5555555555555555555555555555

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=95.53  E-value=0.22  Score=36.01  Aligned_cols=79  Identities=16%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037          19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL   98 (224)
Q Consensus        19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~   98 (224)
                      ||..||+|++.+...+       .++..+++.+......+..+.++--.-...++       +++..+...++...=-+.
T Consensus         1 Ei~eLr~qi~~l~~e~-------~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E-------~d~~~LrkdvD~a~l~r~   66 (86)
T 3swk_A            1 EMRELRRQVDQLTNDK-------ARVEVERDNLAEDIMRLREKLQEEMLQREEAE-------NTLQSFRQDVDNASLARL   66 (86)
T ss_dssp             CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHH
Confidence            4567777777666554       44444444444444444445444333333333       333344444444444444


Q ss_pred             HHHHHHHHHHHHH
Q psy5037          99 DLLKHLKFISQET  111 (224)
Q Consensus        99 ~Lle~~~~l~~e~  111 (224)
                      +|..++.+|.+++
T Consensus        67 dLE~kvesL~eEl   79 (86)
T 3swk_A           67 DLERKVESLQEEI   79 (86)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.32  E-value=0.28  Score=35.19  Aligned_cols=43  Identities=21%  Similarity=0.393  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037          27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA   69 (224)
Q Consensus        27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~el   69 (224)
                      |+.+..++..|...|..|+..++++...+..+..+...+....
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~   50 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR   50 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5677788888888888888888888888887777777644433

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.23  E-value=0.92  Score=36.28  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-hHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037          83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-AESEKKVMKLEALVQDKDCSIKSLEAKLE  161 (224)
Q Consensus        83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-~~~~~ri~~le~~I~e~~~~i~~~e~qL~  161 (224)
                      +..+.......+.+...|...+..-..--...|.....+++++-++--.+ ..+..=|+.....-...+.....++.++.
T Consensus        46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~  125 (154)
T 2ocy_A           46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR  125 (154)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445556666666666666655555566666666666666665555 55566666555555555555555666666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5037         162 ELSHVTAQLETQVQCCQ  178 (224)
Q Consensus       162 ~l~~~~~~lE~EL~~lk  178 (224)
                      +....+..+...|..|+
T Consensus       126 e~~~~l~~lq~ql~~LK  142 (154)
T 2ocy_A          126 EKDTLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66655555555555554

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=95.21  E-value=0.63  Score=35.72  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQET  194 (224)
Q Consensus       145 ~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~  194 (224)
                      .+.++...|..++.+|..++..+...-.+...|-+=+-.|..++..-|.+
T Consensus        76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL  125 (129)
T 3tnu_B           76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566666666777777777776666666667777777777766665554

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=95.01  E-value=0.28  Score=35.51  Aligned_cols=58  Identities=21%  Similarity=0.172  Sum_probs=36.7

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHH
Q psy5037          84 QRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK  141 (224)
Q Consensus        84 ~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~  141 (224)
                      ++.+..+..++.++..|.+.|.........++.++..+..+.|.+...+..+.++...
T Consensus        10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~   67 (89)
T 3bas_A           10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEE   67 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4556666667777777777777777777777777777777777666553333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=94.88  E-value=0.9  Score=34.40  Aligned_cols=93  Identities=20%  Similarity=0.280  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHh
Q psy5037          58 IQQELEASRTEAEDVKLQLQHYCC----EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLA  133 (224)
Q Consensus        58 l~~ele~~e~eleeLk~~~~~~~~----E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~  133 (224)
                      |......+..+++.++.+......    .+..+...|...-..+..|...++.|...-++||...+.+-+-+..+---+-
T Consensus         8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n   87 (111)
T 2v66_B            8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN   87 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence            333334444444444444333332    2444444444444444444444444444444444444444443333333333


Q ss_pred             HHHHHHHHHHHHHHhHH
Q psy5037         134 ESEKKVMKLEALVQDKD  150 (224)
Q Consensus       134 ~~~~ri~~le~~I~e~~  150 (224)
                      .+-+|++-|+.+|.+..
T Consensus        88 ~aiErnalLE~El~EKe  104 (111)
T 2v66_B           88 QAIERNAFLESELDEKE  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44566666666665443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=94.82  E-value=0.65  Score=33.56  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=53.0

Q ss_pred             HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q psy5037         143 EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKT  217 (224)
Q Consensus       143 e~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~  217 (224)
                      +.++......+..+...+..-.....+|+.....+-.++..|...+..+.+.|..|..++..|..++..++.+.+
T Consensus        13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444555555555555555556666666666666666666999999999999999999999999887754

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.76  E-value=0.75  Score=35.41  Aligned_cols=51  Identities=24%  Similarity=0.240  Sum_probs=35.0

Q ss_pred             HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL  195 (224)
Q Consensus       145 ~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~  195 (224)
                      .+.++...|..++.+|..++..+...-.+...|-+=+-.|..++..-|.+.
T Consensus        78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL  128 (131)
T 3tnu_A           78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL  128 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            455666666677777777777777776777777777777777777666553

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=94.72  E-value=0.51  Score=33.43  Aligned_cols=69  Identities=19%  Similarity=0.083  Sum_probs=38.2

Q ss_pred             hhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         123 GEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC  191 (224)
Q Consensus       123 ~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~  191 (224)
                      ..++.++++...+.++...++..+..........+..+.++.+.+.-++.+|..+.+........|...
T Consensus         6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A            6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555666666555555555555555555444443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.67  E-value=0.26  Score=39.08  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=70.7

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037          48 LYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL-------SKKESERLDLLKHLKFISQETAELENNNHS  120 (224)
Q Consensus        48 L~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i-------~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~  120 (224)
                      |..++..+..+...-+++..-..-|...-..+...|..++..+       ...+....++.-.+..+..++.+.+.|+..
T Consensus        19 l~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~   98 (147)
T 2b9c_A           19 LATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEL   98 (147)
T ss_dssp             TTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444433333333333333333       333444555666667777777777788888


Q ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q psy5037         121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELS  164 (224)
Q Consensus       121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~  164 (224)
                      +++.+..+.-++-.+-+.+.+++..-..+-.....|+.+|..|+
T Consensus        99 aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~  142 (147)
T 2b9c_A           99 SEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLK  142 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence            88888877777777778888888777777777888888776554

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=94.65  E-value=0.59  Score=33.67  Aligned_cols=83  Identities=17%  Similarity=0.218  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037          40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH  119 (224)
Q Consensus        40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~  119 (224)
                      |++.|+..+..++.++..+..++.-....+++++.+.+.-..-=.       ..|.++..|..-.+.+.-.-.+||.++.
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~-------~~E~d~~~LrkdvD~a~l~r~dLE~kve   73 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE-------EAENTLQSFRQDVDNASLARLDLERKVE   73 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            356788888888888888888888887777777765544333322       3344444555555555556677888888


Q ss_pred             hhhhhhhhhh
Q psy5037         120 SLDGEMKSCK  129 (224)
Q Consensus       120 ~lE~e~nel~  129 (224)
                      ++..+++=++
T Consensus        74 sL~eEl~fLk   83 (86)
T 3swk_A           74 SLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8877776554

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=94.62  E-value=0.36  Score=34.73  Aligned_cols=75  Identities=13%  Similarity=0.068  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA  210 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~  210 (224)
                      .+++..+++++..|.+.+.   .|..++..+...+..++.+|..++.+-.....++..+=.-...||..+.+-+.-|.
T Consensus         6 e~L~~q~~~Le~~l~e~E~---~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE   80 (86)
T 1x8y_A            6 SQLQCQLAAKEAKLRDLED---SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE   80 (86)
T ss_dssp             ------CTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            3444555555555555555   56778888888888888888888888888888888888888888877776665554

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=94.35  E-value=0.88  Score=33.64  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------------------hHHHHHHHHHHHHHHhHHhhHHHH
Q psy5037          99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------------------AESEKKVMKLEALVQDKDCSIKSL  156 (224)
Q Consensus        99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------------------~~~~~ri~~le~~I~e~~~~i~~~  156 (224)
                      .+..+|..++..+..+...+..++..++++.+-+                      ....+=+..++.++......|..+
T Consensus        10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~l   89 (117)
T 2zqm_A           10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNAL   89 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555544444333                      234566677777777778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy5037         157 EAKLEELSHVTAQLETQVQCCQ  178 (224)
Q Consensus       157 e~qL~~l~~~~~~lE~EL~~lk  178 (224)
                      +.++..+...+.++...|..+.
T Consensus        90 e~~~~~l~~~l~~lk~~l~~~~  111 (117)
T 2zqm_A           90 ERQEKKLNEKLKELTAQIQSAL  111 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888777654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.14  E-value=0.97  Score=35.35  Aligned_cols=63  Identities=11%  Similarity=0.099  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE  162 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~  162 (224)
                      +.+.|-.+..+...++..+..++.++.+++.++.+++.++..+..++......+..++.++..
T Consensus        66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~  128 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK  128 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666667777777777766666666666665555555555555554444444444433333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=94.07  E-value=0.075  Score=50.80  Aligned_cols=154  Identities=16%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037          32 LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQET  111 (224)
Q Consensus        32 ~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~  111 (224)
                      ..+.-|..+--+.+.+-..+..+.    ..=+..+.+..+|..++..+-.++.+....+..-+.....|-++...+.+++
T Consensus       304 qm~~~a~e~~~~~~~e~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~  379 (575)
T 2i1j_A          304 QMKAQAREEKLAKQAQREKLQLEI----AARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK  379 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444443322    2335667778999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         112 AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA  189 (224)
Q Consensus       112 ~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~  189 (224)
                      ..|+.+...++-....+......-......|+.++.+....+..+..+..........+..+|...+.........|.
T Consensus       380 ~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~  457 (575)
T 2i1j_A          380 EELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL  457 (575)
T ss_dssp             --------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988887777666677777888888888888877777777777777777777777776655555553

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=94.07  E-value=0.96  Score=31.97  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037          58 IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE  124 (224)
Q Consensus        58 l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e  124 (224)
                      |..++.....+.+....+.......+...+......+.++..|...+..+..+++..+.++..+...
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k   70 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444555555555555555555555555554444433

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.91  E-value=1.2  Score=31.86  Aligned_cols=66  Identities=29%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL  205 (224)
Q Consensus       140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l  205 (224)
                      ..|+.+|.+.-..|.-+...+++|+..-..|..+...++..|+.+..+...++.....-++++..+
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777777777777777777766666666666666666665555555444

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=93.72  E-value=1.3  Score=31.56  Aligned_cols=78  Identities=13%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             hHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037         131 LLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA  210 (224)
Q Consensus       131 e~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~  210 (224)
                      ++.++.+.+++|+..|.+.+.   .|..++..+...+..++.+|..++.+-.....++..+=.-...||-.+.+-+.-|.
T Consensus         2 el~~l~~~~~sLE~~l~e~e~---~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE   78 (84)
T 1gk4_A            2 EVDALKGTNESLERQMREMEE---NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE   78 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            345667788888888876654   45778888889999999999999999999988988888888888887777665554


Q ss_pred             c
Q psy5037         211 D  211 (224)
Q Consensus       211 ~  211 (224)
                      .
T Consensus        79 G   79 (84)
T 1gk4_A           79 G   79 (84)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=93.69  E-value=1.6  Score=32.64  Aligned_cols=94  Identities=13%  Similarity=0.108  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      -+-.-.||...+...+++......|.+.+..+.   .....+..+-...++.++.++..-..+|..+.+.++....+...
T Consensus        10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~   86 (107)
T 2no2_A           10 NAEVTKQVSMARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEAN   86 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556788888889999999999999999988   56667888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy5037         100 LLKHLKFISQETAELEN  116 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~  116 (224)
                      |...+..+..+...|..
T Consensus        87 l~~~~~~l~~Ek~~L~~  103 (107)
T 2no2_A           87 WAAEFAELEKERDSLVS  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999888888887765

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.22  E-value=1  Score=35.23  Aligned_cols=90  Identities=19%  Similarity=0.162  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHH
Q psy5037          65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEA  144 (224)
Q Consensus        65 ~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~  144 (224)
                      ...++..|...+..-..--..++......+.|..+|+..+   =++++.          =.+..+.+...++.|+..++.
T Consensus        44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL---FeEAN~----------MVa~ar~~~~~~e~r~~~L~~  110 (135)
T 2e7s_A           44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---FDEANN----------LVADARMEKYAIEILNKRLTE  110 (135)
T ss_dssp             HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH---HHHHHH----------HHHHTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444333444445555555555555555432   111111          112236666667778888888


Q ss_pred             HHHhHHhhHHHHHHHHHHHHHHH
Q psy5037         145 LVQDKDCSIKSLEAKLEELSHVT  167 (224)
Q Consensus       145 ~I~e~~~~i~~~e~qL~~l~~~~  167 (224)
                      .+.+....|.+++.||..|..-+
T Consensus       111 ql~e~e~ll~~lq~QL~~LK~v~  133 (135)
T 2e7s_A          111 QLREKDMLLDTLTLQLKNLKKVM  133 (135)
T ss_dssp             TTTHHHHCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888888888776543

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.04  E-value=0.23  Score=38.97  Aligned_cols=97  Identities=16%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-hHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037          83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-AESEKKVMKLEALVQDKDCSIKSLEAKLE  161 (224)
Q Consensus        83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-~~~~~ri~~le~~I~e~~~~i~~~e~qL~  161 (224)
                      .+.+...+..++.+...|...+..-..--...|.....++.++-++--.+ ..+..=|+.....-...+.....++.++.
T Consensus        34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~  113 (135)
T 2e7s_A           34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLR  113 (135)
T ss_dssp             HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444556666666666666655556666677777777766666666 56666666666666666666677777777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy5037         162 ELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       162 ~l~~~~~~lE~EL~~lk~  179 (224)
                      +....+..+...|..|+.
T Consensus       114 e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A          114 EKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777766666666653

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=92.87  E-value=1.3  Score=32.26  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC  176 (224)
Q Consensus       135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~  176 (224)
                      ..+=+..++.++......|..++.++..+...+.++...|..
T Consensus        63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~  104 (107)
T 1fxk_A           63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355556677777777777777777777777777777776653

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.80  E-value=1.9  Score=33.67  Aligned_cols=21  Identities=10%  Similarity=0.093  Sum_probs=7.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHH
Q psy5037          90 LSKKESERLDLLKHLKFISQE  110 (224)
Q Consensus        90 i~~kE~E~~~Lle~~~~l~~e  110 (224)
                      +....+++.+|.+++..+..+
T Consensus       105 ~e~~~~e~~~l~~~~~~l~~~  125 (138)
T 3hnw_A          105 AESSAKEIKELKSEINKYQKN  125 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=92.63  E-value=2.1  Score=34.09  Aligned_cols=63  Identities=17%  Similarity=0.140  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037          66 RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC  128 (224)
Q Consensus        66 e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel  128 (224)
                      ...+..|+..+......+..++..+..|.+-+..|.+++..+.-++..+|.++..++.+...+
T Consensus        67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A           67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446666666677777777777777777777777777777777777777777777777775543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=92.07  E-value=1.9  Score=34.36  Aligned_cols=69  Identities=17%  Similarity=0.165  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037          36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL  104 (224)
Q Consensus        36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~  104 (224)
                      ...+.+..|+..+.....++..+..+|......++.+..++..+..+..-+++.+..++.|+..|.++.
T Consensus        65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A           65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678888888888888888888888888899999999999999999999999999999998877654

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.98  E-value=2.8  Score=30.92  Aligned_cols=16  Identities=13%  Similarity=0.061  Sum_probs=6.8

Q ss_pred             hHHHHHHHHHHHHHHh
Q psy5037         133 AESEKKVMKLEALVQD  148 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e  148 (224)
                      ..++.++..|..+|.+
T Consensus        79 ~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           79 YAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            3334444444444433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.93  E-value=2.9  Score=30.89  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIE   87 (224)
Q Consensus        18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE   87 (224)
                      .+..++|.+|+.+.....+...++.+|+.+|..-......++......+.++++|-..+=+-...|-.-.
T Consensus         5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a   74 (97)
T 2eqb_B            5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA   74 (97)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999888777766666665433

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=91.29  E-value=3.3  Score=30.36  Aligned_cols=31  Identities=13%  Similarity=0.189  Sum_probs=12.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      +...+..+..++..+...+..++.++..+..
T Consensus        69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~   99 (112)
T 1l8d_A           69 YHLDLNNSKNTLAKLIDRKSELERELRRIDM   99 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444433333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=91.24  E-value=3.3  Score=30.27  Aligned_cols=60  Identities=13%  Similarity=0.228  Sum_probs=24.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037          53 QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETA  112 (224)
Q Consensus        53 ~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~  112 (224)
                      .+...+..+|...+.+...+..+=..|-.+-+.+.-.+.....++..|..+|.-....++
T Consensus        32 ke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd   91 (96)
T 3q8t_A           32 KNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD   91 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444444444444444444444444444444333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=90.28  E-value=4.6  Score=30.37  Aligned_cols=82  Identities=13%  Similarity=0.169  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037         138 KVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET---QVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN  214 (224)
Q Consensus       138 ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~---EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~  214 (224)
                      .++.|..++...+.++.....+|..++..+.....   .+.-|+..-.--..|-.+=|..+.++.+.|+.|..++..+..
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~  104 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR  104 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence            35566666666666666666666666666666666   566777888888889999999999999999999999988776


Q ss_pred             HHHhh
Q psy5037         215 YKTKE  219 (224)
Q Consensus       215 ~~~~l  219 (224)
                      ....|
T Consensus       105 q~~~l  109 (110)
T 2v4h_A          105 EFNKL  109 (110)
T ss_dssp             HHTTC
T ss_pred             HHHhc
Confidence            55443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.29  E-value=7  Score=35.32  Aligned_cols=74  Identities=14%  Similarity=0.222  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         102 KHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ  178 (224)
Q Consensus       102 e~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk  178 (224)
                      +-..-|...++++..++.+++...+.+.+-.-.+.   ++|+.++++....|++++.+|..+...+..++.+++.++
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445677888888888888888888876554432   466677777777777777777777777777777766654

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=88.75  E-value=5  Score=28.58  Aligned_cols=56  Identities=18%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037          47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK  102 (224)
Q Consensus        47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle  102 (224)
                      +.+.+..++..|.-++++.+++.-..+.++.+...|++.+...+..++.++.-|.+
T Consensus        20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~   75 (81)
T 3qh9_A           20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            33445555555555555555555555555555555555555555555555544443

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=88.54  E-value=6  Score=29.23  Aligned_cols=43  Identities=14%  Similarity=0.285  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ  178 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk  178 (224)
                      ..|.++..++|.++-..+...+.|.++|-...=-+|.|+..++
T Consensus        61 ~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k  103 (114)
T 2xzr_A           61 SARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK  103 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444445555555555555555555555555555555544443

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=88.31  E-value=4.4  Score=28.76  Aligned_cols=70  Identities=20%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5037          38 QSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFI  107 (224)
Q Consensus        38 ~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l  107 (224)
                      ..++..+...|..+..+|..++..+..++..+++-+.+......|+.++=+.++-|=.+..+|...+.+|
T Consensus         5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL   74 (79)
T 3cvf_A            5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL   74 (79)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            3445555666777777777777777777777777777777777777777777766666666655555443

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=87.94  E-value=11  Score=34.93  Aligned_cols=69  Identities=14%  Similarity=0.188  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA  168 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~  168 (224)
                      |+..-..+...+..|+++++++....++...-...+.......+..+.+....|..|...|+.....+.
T Consensus        91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~  159 (464)
T 1m1j_B           91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK  159 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence            556666678888888888888876666655445566666777777777777777777777766665554

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=87.94  E-value=6.2  Score=28.75  Aligned_cols=81  Identities=14%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037          48 LYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS  127 (224)
Q Consensus        48 L~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ne  127 (224)
                      .+.+..++..+..+=..+..++..++.....+..++..++.....++.+-...-..|....-++-.+.+...++++.+.-
T Consensus         6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~   85 (96)
T 3q8t_A            6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY   85 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555556666666666666666666666666666666666666666666666666666555555555555443


Q ss_pred             h
Q psy5037         128 C  128 (224)
Q Consensus       128 l  128 (224)
                      .
T Consensus        86 ~   86 (96)
T 3q8t_A           86 A   86 (96)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=87.70  E-value=6.8  Score=28.99  Aligned_cols=36  Identities=31%  Similarity=0.476  Sum_probs=31.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYD   50 (224)
Q Consensus        15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~   50 (224)
                      .+..++..|++.++.+++.++.+.+++..|...|+.
T Consensus         9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~   44 (100)
T 1go4_E            9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLER   44 (100)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356688999999999999999999999999988877

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=87.58  E-value=6.7  Score=29.16  Aligned_cols=58  Identities=12%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037          18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQ   75 (224)
Q Consensus        18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~   75 (224)
                      -|=++|-.|+|.+++..++....+..++.++.+...+...+...+..+...+..++.+
T Consensus        23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~   80 (103)
T 4h22_A           23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA   80 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666665555555555555555555444444444444444444433

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.75  E-value=7.5  Score=28.43  Aligned_cols=81  Identities=14%  Similarity=0.167  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037         139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE---TQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY  215 (224)
Q Consensus       139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE---~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~  215 (224)
                      +..|..++...+.++.+...+|..|...+....   +.+.-|+..-..-..|-.+=|..+.++.+.++.|..++..+...
T Consensus         4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q   83 (94)
T 3jsv_C            4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE   83 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            456667777777777778888888888777777   66677788888888888888888888888888888888877655


Q ss_pred             HHhh
Q psy5037         216 KTKE  219 (224)
Q Consensus       216 ~~~l  219 (224)
                      ...|
T Consensus        84 ~~~L   87 (94)
T 3jsv_C           84 FNKL   87 (94)
T ss_dssp             TC--
T ss_pred             HHHH
Confidence            4443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=86.63  E-value=8.5  Score=28.92  Aligned_cols=94  Identities=15%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             cchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037           5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ   84 (224)
Q Consensus         5 ~~~~~~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~   84 (224)
                      |-.|+++-.   .-+|+.|..+|..+....       ...+.+++.+..++......+    ..+.=|+.++.-|...-.
T Consensus        14 ~~~~~~~~~---~~ei~~L~~~L~~AEeaL-------~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~   79 (110)
T 2v4h_A           14 LVPRGSHMA---SMQLEDLRQQLQQAEEAL-------VAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQ   79 (110)
T ss_dssp             CCCTTCCSS---CCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHhh---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHc
Confidence            444444433   336777777766654443       335555555555444433333    346667777777877776


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037          85 RIEEILSKKESERLDLLKHLKFISQETA  112 (224)
Q Consensus        85 rlE~~i~~kE~E~~~Lle~~~~l~~e~~  112 (224)
                      .=.+.-...-.++..|..++..|..++.
T Consensus        80 aERadREkl~~eKe~L~~ql~~Lq~q~~  107 (110)
T 2v4h_A           80 AERHAREKLVEKKEYLQEQLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            6666666666666667777776665544

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=86.37  E-value=4.6  Score=28.67  Aligned_cols=39  Identities=21%  Similarity=0.054  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         159 KLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDT  197 (224)
Q Consensus       159 qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~k  197 (224)
                      +|+.-...-..+..+|+.+.+--+-...+|..+|.-..+
T Consensus        35 ~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak   73 (79)
T 3cvf_A           35 SLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR   73 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444444444433

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=84.44  E-value=9  Score=27.24  Aligned_cols=60  Identities=18%  Similarity=0.302  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037          32 LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS   91 (224)
Q Consensus        32 ~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~   91 (224)
                      .+-+++.+|+.-|...++.|..+.---+.+|.....++..|+.++..-.++|.++.+.+.
T Consensus        19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~   78 (81)
T 3qh9_A           19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            334577888888888888888888888888888888888888888888888888877664

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.20  E-value=14  Score=34.83  Aligned_cols=40  Identities=18%  Similarity=0.166  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037         134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQ  173 (224)
Q Consensus       134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~E  173 (224)
                      .|+.++..|+.+|......|..++.-|..+...|.+||..
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD  153 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD  153 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666666666666666666666666665544

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=83.51  E-value=12  Score=28.09  Aligned_cols=47  Identities=9%  Similarity=0.220  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE  179 (224)
Q Consensus       133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~  179 (224)
                      .++.+=+.-++++|......+..++.++..++..+..+...|+++..
T Consensus        84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~  130 (133)
T 1fxk_C           84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44577778888888888888888888888888888888888887754

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=82.89  E-value=10  Score=26.86  Aligned_cols=54  Identities=15%  Similarity=0.095  Sum_probs=43.8

Q ss_pred             HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         143 EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD  196 (224)
Q Consensus       143 e~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~  196 (224)
                      ...+.++...|..++.+|..++..+...-.+.+.|-+=+..|..++..-|.+..
T Consensus        27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE   80 (86)
T 1x8y_A           27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            345667777888888888888888888888888888888888888888887765

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=82.75  E-value=4.8  Score=31.72  Aligned_cols=69  Identities=16%  Similarity=0.132  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCC
Q psy5037         154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAP  222 (224)
Q Consensus       154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~  222 (224)
                      .++...|...+.....++.+|..+..+...+..++..+.+..--.+.+...+.+.|.+......++.+.
T Consensus        69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlEad  137 (146)
T 2xnx_M           69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKD  137 (146)
T ss_dssp             TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------------------
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555566666666666666666666666666666665556666666666666666665555543

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=81.97  E-value=33  Score=31.88  Aligned_cols=39  Identities=18%  Similarity=0.214  Sum_probs=22.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          52 NQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL   90 (224)
Q Consensus        52 ~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i   90 (224)
                      ..-+..|...+...+..+.++...+..|..+|.+....|
T Consensus       120 ~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i  158 (464)
T 1m1j_B          120 YQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI  158 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence            333444555566666666666666666666665555444

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M

Probab=81.86  E-value=16  Score=28.39  Aligned_cols=45  Identities=7%  Similarity=0.045  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037          37 AQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC   81 (224)
Q Consensus        37 a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~   81 (224)
                      +..++..+...+......+..+...+..+....++|...+..+..
T Consensus        34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~   78 (155)
T 2oto_A           34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQ   78 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333444444444444444433

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=81.66  E-value=11  Score=26.46  Aligned_cols=52  Identities=17%  Similarity=0.169  Sum_probs=40.9

Q ss_pred             HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD  196 (224)
Q Consensus       145 ~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~  196 (224)
                      .+.++.+.|..++.+|..++..+...-.+.+.|-+=+-.|..++..-|.+..
T Consensus        27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE   78 (84)
T 1gk4_A           27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE   78 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            4566777778888888888888888888888888888888888888777654

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=81.66  E-value=11  Score=30.83  Aligned_cols=47  Identities=13%  Similarity=0.152  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037          23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA   69 (224)
Q Consensus        23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~el   69 (224)
                      +..||+..-.-++.+..||..|...++....++..+..++...+...
T Consensus        11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~   57 (190)
T 4emc_A           11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV   57 (190)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44556555555556666666666666655554444444444444433

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=81.49  E-value=10  Score=25.89  Aligned_cols=43  Identities=12%  Similarity=0.200  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037         136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ  178 (224)
Q Consensus       136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk  178 (224)
                      ..++..+...+..+-..+...+.+|.+++..+..|+.+|..++
T Consensus        34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk   76 (77)
T 3trt_A           34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3455555555666666666666666666666666666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.75  E-value=32  Score=31.02  Aligned_cols=40  Identities=23%  Similarity=0.245  Sum_probs=19.9

Q ss_pred             hHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy5037         131 LLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQL  170 (224)
Q Consensus       131 e~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~l  170 (224)
                      +...+.++.+.++..|.+...+|.+....+-.+..+...+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (487)
T 3oja_A          443 KETQLAEENARLKKLNGEADLALASANATLQELVVREQNL  482 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence            3334444555555555555555555555555554444443

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=80.45  E-value=9.4  Score=27.11  Aligned_cols=27  Identities=15%  Similarity=0.112  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037          97 RLDLLKHLKFISQETAELENNNHSLDG  123 (224)
Q Consensus        97 ~~~Lle~~~~l~~e~~~lE~r~~~lE~  123 (224)
                      ...++.++..+..+++.+..|+..|+.
T Consensus        58 ~~~l~~~l~~~e~eLe~~~erWeeLe~   84 (89)
T 2lw1_A           58 TQKVLADMAAAEQELEQAFERWEYLEA   84 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566666666666666666555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	93.3
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	89.47
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	85.37
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	82.79
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	81.25

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.30  E-value=0.46  Score=33.39  Aligned_cols=75  Identities=11%  Similarity=0.246  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH----------------------HHHHHHHHHHHHHhHHhhHHHHH
Q psy5037         100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAE----------------------SEKKVMKLEALVQDKDCSIKSLE  157 (224)
Q Consensus       100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~----------------------~~~ri~~le~~I~e~~~~i~~~e  157 (224)
                      ...+|..+..++..+-..+..+++.+++..+-+..                      ..+=+..+..++......|..++
T Consensus         6 ~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~   85 (107)
T d1fxka_           6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIE   85 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555444422                      23334444445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5037         158 AKLEELSHVTAQLETQV  174 (224)
Q Consensus       158 ~qL~~l~~~~~~lE~EL  174 (224)
                      .++..+...+.++...+
T Consensus        86 ~q~~~l~~~l~~~~~~l  102 (107)
T d1fxka_          86 RQEERVMKKLQEMQVNI  102 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555544444444

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.47  E-value=2.4  Score=29.60  Aligned_cols=9  Identities=11%  Similarity=0.390  Sum_probs=3.5

Q ss_pred             HHHHHHHHH
Q psy5037          20 IDRFKYELN   28 (224)
Q Consensus        20 ~~~lr~ql~   28 (224)
                      |..+..+++
T Consensus         7 ~~~~~~~~~   15 (185)
T d2ap3a1           7 IKAYLKQVD   15 (185)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=85.37  E-value=2.6  Score=29.25  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037          39 SEVRRLQTELYDMNQHNMTIQQELEA-SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD   99 (224)
Q Consensus        39 ~E~~rlq~dL~~~~~e~~~l~~ele~-~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~   99 (224)
                      .+.+.++..++.+..+...+...|.. .......+..+...+..++..++..+...+.++..
T Consensus        35 ~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~   96 (110)
T d1seta1          35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA   96 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444322 11223344444444455555555554444444443

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=82.79  E-value=5  Score=27.65  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy5037          96 ERLDLLKHLKFISQETAELENNNHSLDGEMKSCKN  130 (224)
Q Consensus        96 E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~l  130 (224)
                      ....+..+...+..++..++.....++.+++.+.+
T Consensus        65 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll   99 (110)
T d1seta1          65 EKEALIARGKALGEEAKRLEEALREKEARLEALLL   99 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44557777777777777777777777777766544

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.25  E-value=6.4  Score=27.02  Aligned_cols=36  Identities=11%  Similarity=0.318  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037          38 QSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVK   73 (224)
Q Consensus        38 ~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk   73 (224)
                      ......++.++..+....+.+...+.+...-+++|+
T Consensus         7 ~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~   42 (107)
T d1fxka_           7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS   42 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444333