Psyllid ID: psy5085

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MLRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD
ccccEEEEEEEEHHHHcHHHHHHccccccEEEEEccEEEEEEcccEEEEcccccccEEEEEEEEEEcccccccccccccEEEEEEEEcccccEEEEEEEEEEEEEcccEEEEEEEEEEcccccEEEEEEEEccccEEcccccEEEcEEEEEccccEEEEEEEEEccccccccccEEEEEEEEccccccEEEccccEEEEEEEEcccccccEEEEccEEEEEcccEEEEEEEEEEccccccEEEEEEEEccccccccccccccEEEEEccccEEEEEEEEEEccccccccEEEEEEEEcccccEEEccccEEEEEEEccc
cccccccHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHEcccccEEEEEcccccccccEEEEEEcccccccEcccccEEEEEEEcccccccEEEEcccEEEEEccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccccEEEEccccEEEEEEEEEEcccccccccEEEEEEEEccccccccEcccccEEEEEEEccccccEEEEcccEEEEEccccEEEEEEEEEccccEEEEEEEEEEcccccccccccccccEEEEccccEEEEEEEEEEcccccccccEEEEEEEccccccEcccccEEEEEEEccc
MLRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAVRkftgakrtepVLNQRLQEVYKVLNkkdkdsldnkttdkvetTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDsidgsakqgkryqKVNQTVVFKENETEKFVTIRIindekwdpVEEFFLRLTLLNKSADMvklgglnimevtiiddddpgiiqfekrgylvkessgvvaipilrtsgsdgdvsvkwktvdktaissrdykggsgvitfkhgevrrvleipiiddlkpekdEYFEvklseptggakigvVNHCAVTITNDD
MLRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKvlnkkdkdsldnkttdkvetttefkietktnyaiIEFHAVTVAVREDIGSFKVGilrhgnlqniarvRVDSidgsakqgkryqkvnqtvvfkenetekfvtiriindekwdpVEEFFLRLTLLNKSADMVKLGGLNIMEvtiiddddpGIIQFEKRgylvkessgvvaipilrtsgsdgdvsvkwktvdktaissrdykggsgvitfkhgevrrvleipiiddlkpekDEYFEVKLseptggakigvvNHCAVTITNDD
MLRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYkvlnkkdkdsldnkttdkvetttefkietktNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD
***LKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVL*****************TTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTI****
*****KYYLAIFWKFIK********TNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKD***********VETTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITND*
MLRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD
MLRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITND*
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MLRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
P48767 970 Sodium/calcium exchanger N/A N/A 0.642 0.211 0.325 4e-23
Q01728 971 Sodium/calcium exchanger yes N/A 0.636 0.209 0.310 8e-23
P23685 970 Sodium/calcium exchanger yes N/A 0.642 0.211 0.321 9e-23
P48766 970 Sodium/calcium exchanger yes N/A 0.642 0.211 0.321 9e-23
P48765 970 Sodium/calcium exchanger yes N/A 0.642 0.211 0.330 1e-22
P32418 973 Sodium/calcium exchanger yes N/A 0.642 0.210 0.316 2e-22
P70414 970 Sodium/calcium exchanger yes N/A 0.780 0.256 0.276 2e-21
P70549 927 Sodium/calcium exchanger no N/A 0.815 0.280 0.295 7e-21
Q8VHN7 6298 G-protein coupled recepto no N/A 0.755 0.038 0.310 9e-21
P57103 927 Sodium/calcium exchanger no N/A 0.815 0.280 0.288 1e-20
>sp|P48767|NAC1_FELCA Sodium/calcium exchanger 1 OS=Felis catus GN=SLC8A1 PE=2 SV=1 Back     alignment and function desciption
 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 16/221 (7%)

Query: 95  IEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKE 153
           I F   T    E+ G+  + ILR G +L N   V   + DG+A  G  Y+    TVVFK 
Sbjct: 406 IFFEQGTYQCLENCGTVALTILRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKP 465

Query: 154 NETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSAD--------------MVKLGGLNIME 199
            ET+K + + II+D+ ++  E F + L+ +  S++              +  LG  +   
Sbjct: 466 GETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSTLACLGSPSTAT 525

Query: 200 VTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDY 258
           VTI DDD  GI  FE+    V ES G++ + +LRTSG+ G+V V +KT++ TA     D+
Sbjct: 526 VTIFDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDF 585

Query: 259 KGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
           +   G + F++ E+ + + + +IDD + EK++ F +++ EP
Sbjct: 586 EDTCGELEFQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEP 626
Rapidly transports Ca(2+) during excitation-contraction coupling. Ca(2+) is extruded from the cell during relaxation so as to prevent overloading of intracellular stores.
Felis catus (taxid: 9685)
>sp|Q01728|NAC1_RAT Sodium/calcium exchanger 1 OS=Rattus norvegicus GN=Slc8a1 PE=2 SV=3 Back     alignment and function description
>sp|P23685|NAC1_CANFA Sodium/calcium exchanger 1 OS=Canis familiaris GN=SLC8A1 PE=1 SV=1 Back     alignment and function description
>sp|P48766|NAC1_CAVPO Sodium/calcium exchanger 1 OS=Cavia porcellus GN=SLC8A1 PE=2 SV=1 Back     alignment and function description
>sp|P48765|NAC1_BOVIN Sodium/calcium exchanger 1 OS=Bos taurus GN=SLC8A1 PE=1 SV=1 Back     alignment and function description
>sp|P32418|NAC1_HUMAN Sodium/calcium exchanger 1 OS=Homo sapiens GN=SLC8A1 PE=1 SV=3 Back     alignment and function description
>sp|P70414|NAC1_MOUSE Sodium/calcium exchanger 1 OS=Mus musculus GN=Slc8a1 PE=1 SV=1 Back     alignment and function description
>sp|P70549|NAC3_RAT Sodium/calcium exchanger 3 OS=Rattus norvegicus GN=Slc8a3 PE=2 SV=1 Back     alignment and function description
>sp|Q8VHN7|GPR98_MOUSE G-protein coupled receptor 98 OS=Mus musculus GN=Gpr98 PE=2 SV=1 Back     alignment and function description
>sp|P57103|NAC3_HUMAN Sodium/calcium exchanger 3 OS=Homo sapiens GN=SLC8A3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
328703497 825 PREDICTED: sodium/calcium exchanger 1-li 0.918 0.355 0.565 7e-80
321459173 822 hypothetical protein DAPPUDRAFT_328233 [ 0.902 0.350 0.471 2e-75
242016779 840 predicted protein [Pediculus humanus cor 0.899 0.341 0.444 2e-70
321467196 721 hypothetical protein DAPPUDRAFT_53556 [D 0.862 0.381 0.423 3e-63
195999284 805 hypothetical protein TRIADDRAFT_53617 [T 0.874 0.346 0.413 1e-55
391340114 815 PREDICTED: sodium/calcium exchanger 1-li 0.893 0.349 0.392 2e-54
405968026 833 Sodium/calcium exchanger 3 [Crassostrea 0.902 0.345 0.397 2e-53
390366353 821 PREDICTED: sodium/calcium exchanger 1-li 0.880 0.342 0.389 3e-53
390366351 806 PREDICTED: sodium/calcium exchanger 1-li 0.880 0.348 0.389 4e-53
291242662 806 PREDICTED: solute carrier family 8 (sodi 0.874 0.346 0.397 3e-51
>gi|328703497|ref|XP_001948742.2| PREDICTED: sodium/calcium exchanger 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 217/297 (73%), Gaps = 4/297 (1%)

Query: 19  TTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKV 78
            T L+++T+  A+WY+IGAVR+FTG K+ EPVL   L++VY V+ K  ++  D  T +  
Sbjct: 286 ATKLIDSTHRGAMWYRIGAVRRFTGGKQIEPVLEDHLRQVYDVIKKNGENGYD--TLNHK 343

Query: 79  ETTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQ 138
             T     ETK  YAIIEFHA T+AV E+IG F V I RHGNL   A VRVDSI+G+AK+
Sbjct: 344 PPTLSQNDETK--YAIIEFHAPTIAVNENIGRFPVTIWRHGNLNTKATVRVDSINGTAKE 401

Query: 139 GKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIM 198
           G+ + KV + V FKENE EK + I I++D KW+P EEFFLRL++++     VKLG ++IM
Sbjct: 402 GEDFVKVKEIVEFKENEEEKEIYIEILDDNKWEPDEEFFLRLSVVHHKDLSVKLGCISIM 461

Query: 199 EVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDY 258
           EVTIID+D+PGII F KRG LVKES+G V +PI+RT GSD +VSVKWKT+D++AIS RDY
Sbjct: 462 EVTIIDNDEPGIISFGKRGLLVKESTGFVEVPIVRTHGSDSEVSVKWKTIDESAISGRDY 521

Query: 259 KGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTI 315
            GG G I FK  EV ++L + II+D+ PEKDE FE+KL E TGGA+IG VN  A+TI
Sbjct: 522 VGGEGEIIFKDKEVAKILRVEIINDMCPEKDECFEIKLFETTGGARIGNVNRIAITI 578

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|321459173|gb|EFX70229.1| hypothetical protein DAPPUDRAFT_328233 [Daphnia pulex] Back     alignment and taxonomy information
>gi|242016779|ref|XP_002428906.1| predicted protein [Pediculus humanus corporis] gi|212513688|gb|EEB16168.1| predicted protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|321467196|gb|EFX78187.1| hypothetical protein DAPPUDRAFT_53556 [Daphnia pulex] Back     alignment and taxonomy information
>gi|195999284|ref|XP_002109510.1| hypothetical protein TRIADDRAFT_53617 [Trichoplax adhaerens] gi|190587634|gb|EDV27676.1| hypothetical protein TRIADDRAFT_53617 [Trichoplax adhaerens] Back     alignment and taxonomy information
>gi|391340114|ref|XP_003744390.1| PREDICTED: sodium/calcium exchanger 1-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|405968026|gb|EKC33131.1| Sodium/calcium exchanger 3 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|390366353|ref|XP_003731023.1| PREDICTED: sodium/calcium exchanger 1-like isoform 1 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|390366351|ref|XP_794875.3| PREDICTED: sodium/calcium exchanger 1-like isoform 2 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|291242662|ref|XP_002741228.1| PREDICTED: solute carrier family 8 (sodium/calcium exchanger), member 3-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
ZFIN|ZDB-GENE-050809-103 925 slc8a4b "solute carrier family 0.642 0.221 0.339 1e-24
ZFIN|ZDB-GENE-060110-2 939 slc8a4a "solute carrier family 0.338 0.115 0.398 2.7e-23
RGD|3717 971 Slc8a1 "solute carrier family 0.636 0.209 0.310 5.8e-23
UNIPROTKB|F1MC36 970 SLC8A1 "Sodium/calcium exchang 0.642 0.211 0.330 1.6e-22
UNIPROTKB|P48765 970 SLC8A1 "Sodium/calcium exchang 0.642 0.211 0.330 1.6e-22
UNIPROTKB|P23685 970 SLC8A1 "Sodium/calcium exchang 0.642 0.211 0.321 1.6e-22
UNIPROTKB|P48766 970 SLC8A1 "Sodium/calcium exchang 0.642 0.211 0.321 1.6e-22
UNIPROTKB|E7EV41664 SLC8A1 "Sodium/calcium exchang 0.642 0.308 0.316 1.6e-22
ZFIN|ZDB-GENE-060531-155 894 slc8a2a "solute carrier family 0.642 0.229 0.317 2.9e-22
UNIPROTKB|F1NYZ4 957 SLC8A1 "Uncharacterized protei 0.636 0.212 0.330 3.2e-22
ZFIN|ZDB-GENE-050809-103 slc8a4b "solute carrier family 8 (sodium/calcium exchanger), member 4b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 293 (108.2 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 75/221 (33%), Positives = 115/221 (52%)

Query:    95 IEFHAVTVAVREDIGSFKVGILRHGNLQNIA-RVRVDSIDGSAKQGKRYQKVNQTVVFKE 153
             I+F        E+ GS K+ + RHG     + +V   + DG+A  G  Y+    T+VFK 
Sbjct:   404 IDFEPALYQCFENCGSLKLTVQRHGGDAGCSVKVDYRTEDGTANAGSDYEFAEGTLVFKP 463

Query:   154 NETEKFVTIRIINDEKWDPVEEFFLRLT-------------LLNKSADM--VKLGGLNIM 198
              E  K + + II+D+ ++  E F++RL+              L   A      LG  +  
Sbjct:   464 GENVKDIAVGIIDDDIFEEDEYFYVRLSNPRIVGWADGHPIALETGAPAPSAALGEAHTA 523

Query:   199 EVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDY 258
              VTI DDD  GI  FE     V ES G++ + + RTSG+ G V+V ++TVD TA    DY
Sbjct:   524 TVTIYDDDHAGIFTFESESMRVSESIGIMQVKVQRTSGARGLVAVPYQTVDGTACGGEDY 583

Query:   259 KGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
             +  SG + F++ E  + +E+ IIDD + EK++ F ++L EP
Sbjct:   584 EEVSGKLEFQNDETMKTIEVKIIDDEEYEKNKTFSIELGEP 624
GO:0006816 "calcium ion transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0007154 "cell communication" evidence=IEA
GO:0005432 "calcium:sodium antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
ZFIN|ZDB-GENE-060110-2 slc8a4a "solute carrier family 8 (sodium/calcium exchanger), member 4a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|3717 Slc8a1 "solute carrier family 8 (sodium/calcium exchanger), member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MC36 SLC8A1 "Sodium/calcium exchanger 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P48765 SLC8A1 "Sodium/calcium exchanger 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P23685 SLC8A1 "Sodium/calcium exchanger 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P48766 SLC8A1 "Sodium/calcium exchanger 1" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|E7EV41 SLC8A1 "Sodium/calcium exchanger 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060531-155 slc8a2a "solute carrier family 8 (sodium-calcium exchanger), member 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYZ4 SLC8A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
TIGR00845 928 TIGR00845, caca, sodium/calcium exchanger 1 1e-36
smart0023790 smart00237, Calx_beta, Domains in Na-Ca exchangers 1e-19
pfam0316091 pfam03160, Calx-beta, Calx-beta domain 5e-17
smart0023790 smart00237, Calx_beta, Domains in Na-Ca exchangers 4e-15
pfam0316091 pfam03160, Calx-beta, Calx-beta domain 4e-15
TIGR00845 928 TIGR00845, caca, sodium/calcium exchanger 1 4e-12
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1 Back     alignment and domain information 
 Score =  139 bits (352), Expect = 1e-36
 Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 30/281 (10%)

Query: 32  WYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKTN 91
           +Y+I A R  TGA                 + KK       K     E  T+   E    
Sbjct: 356 FYRIQATRLMTGAGN---------------ILKKHAADAARKAVSMHEVATD--DEENDP 398

Query: 92  YAIIEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVV 150
            + I F        E+ G+  + ++R G +L N   V   + DG+A  G  Y+    T+V
Sbjct: 399 VSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLV 458

Query: 151 FKENETEKFVTIRIINDEKWDPVEEFFLRLTLL-----------NKSADMVKLGGLNIME 199
           FK  ET+K   I II+D+ ++  E F++RL+ L           N  + + +L   N   
Sbjct: 459 FKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTAT 518

Query: 200 VTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDY 258
           VTI+DDD  GI  FE+  + V ES G++ + +LRTSG+ G V V ++TV+ TA    +D+
Sbjct: 519 VTILDDDHAGIFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDF 578

Query: 259 KGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
           +   G + F++ E  + + + I+DD + EK++ F ++L EP
Sbjct: 579 EDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIELGEP 619

The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]. Length = 928
>gnl|CDD|197594 smart00237, Calx_beta, Domains in Na-Ca exchangers and integrin-beta4 Back     alignment and domain information
>gnl|CDD|202559 pfam03160, Calx-beta, Calx-beta domain Back     alignment and domain information
>gnl|CDD|197594 smart00237, Calx_beta, Domains in Na-Ca exchangers and integrin-beta4 Back     alignment and domain information
>gnl|CDD|202559 pfam03160, Calx-beta, Calx-beta domain Back     alignment and domain information
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
TIGR00845 928 caca sodium/calcium exchanger 1. This model is spe 100.0
KOG1306|consensus 596 99.97
smart0023790 Calx_beta Domains in Na-Ca exchangers and integrin 99.9
smart0023790 Calx_beta Domains in Na-Ca exchangers and integrin 99.88
PF03160100 Calx-beta: Calx-beta domain; InterPro: IPR003644 T 99.87
TIGR00845 928 caca sodium/calcium exchanger 1. This model is spe 99.86
PF03160100 Calx-beta: Calx-beta domain; InterPro: IPR003644 T 99.81
KOG1306|consensus 596 98.65
KOG4289|consensus 2531 91.81
KOG4289|consensus 2531 84.85
>TIGR00845 caca sodium/calcium exchanger 1 Back     alignment and domain information 
Probab=100.00  E-value=6.3e-69  Score=554.06  Aligned_cols=300  Identities=29%  Similarity=0.458  Sum_probs=275.4

Q ss_pred             chhhHHHHHHHHHHhh-------------hHHHHhcCCcceeEEEeeeeeehhcCCcccchhhHhHHHHHhhhcccCccc
Q psy5085           3 RLKKYYLAIFWKFIKQ-------------TTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDS   69 (319)
Q Consensus         3 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~sra~yri~a~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (319)
                      +.|++|++|++.++|+             +++++.+||||||||||||||+|+|+||++||+.++++++..        +
T Consensus       314 ~~r~~~~~~l~el~~~~p~~~~~~l~~~a~~~~~~~~~ksRAfYRiqaTR~~~G~g~i~~k~~~~~~~~~~--------~  385 (928)
T TIGR00845       314 EARREMIRILKELKQKHPDKDLEQLEEMANYQVLSRQQKSRAFYRIQATRLMTGAGNILKKHAADAARKAV--------S  385 (928)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCcceeeeeeehhhhccCCcchhhhHHhhhchhh--------c
Confidence            3688999999999998             899999999999999999999999999999998876665532        1


Q ss_pred             cccccccccccccccccCCCCCeeEEEEEeeeEEEecCCeEEEEEEEEeC-CCCceEEEEEEEeCCCccCCCCeeeeceE
Q psy5085          70 LDNKTTDKVETTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQT  148 (319)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~d~~~~~i~F~~~~y~V~E~~g~v~vtV~R~g-~~~~~vtV~~~t~dGTA~~g~Dy~~~~gt  148 (319)
                      ...+         ..++.+|++.++|+|++++|+|+|++|+++++|.|+| +++.+++|+|+|.||||++|.||.+.+|+
T Consensus       386 ~~~~---------~~~~~~dd~~s~i~Fe~~~Y~V~En~GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGT  456 (928)
T TIGR00845       386 MHEV---------ATDDEENDPVSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGT  456 (928)
T ss_pred             chhc---------cccccccCCcceEEecCCeEEEeecCcEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCce
Confidence            1111         1235667889999999999999999999999999996 78889999999999999999999999999


Q ss_pred             EEEeCCceEEEEEEEEecCCCCCCceEEEEEEE-eecCCC---------Cccc-ccceeeeEEEEeeCCCCceeeeeecc
Q psy5085         149 VVFKENETEKFVTIRIINDEKWDPVEEFFLRLT-LLNKSA---------DMVK-LGGLNIMEVTIIDDDDPGIIQFEKRG  217 (319)
Q Consensus       149 l~F~~Get~k~i~I~IidD~i~E~dE~F~v~L~-~~~~~~---------~~~~-lg~~~~a~VtI~Ddd~~g~~~F~~~~  217 (319)
                      |+|+|||++|+|+|.|+||+++|+||+|+|+|+ |+.+..         .+.+ ||.++.++|||+|||++|+|+|+++.
T Consensus       457 LtF~PGEt~KtItV~IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlDDD~aGIfsFe~~~  536 (928)
T TIGR00845       457 LVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILDDDHAGIFTFEEDV  536 (928)
T ss_pred             EEECCCceEEEEEEEEccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEecCcccCcccccCce
Confidence            999999999999999999999999999999999 874411         1245 99999999999999999999999999


Q ss_pred             eeecCCCceEEEeEEecCCCCCcEEEEEEeeeccccCC-CcccccceEEEEeCCeeEEEEEEEeecCCCCCCCeEEEEEE
Q psy5085         218 YLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISS-RDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKL  296 (319)
Q Consensus       218 ~~V~E~~g~~~v~V~R~~g~~g~v~V~~~t~dGTA~~G-~DY~~~~g~l~F~~get~k~i~I~IidD~~~E~dE~F~v~L  296 (319)
                      |.|.|+.|.+.++|.|++|++|.|+|+|.|.+|||++| .||...+|+|+|++||++|+|+|+|+||.++|++|+|.|+|
T Consensus       537 ~sV~Es~G~vtvtV~RtsGa~G~VtV~Y~T~dGTA~aGg~DY~~~sGtLtF~~GEtsKtItV~IiDD~~~E~dEtF~V~L  616 (928)
T TIGR00845       537 FHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL  616 (928)
T ss_pred             EEEEcCCCEEEEEEEEcCCCCeeEEEEEEeecCccCCCCCCcccccceEEEcCCcEEEEEEEEEcCCCcccCceeEEEEE
Confidence            99999999999999999999999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             eCCC------------------------------------CCeeeeccceEEEEEeCCC
Q psy5085         297 SEPT------------------------------------GGAKIGVVNHCAVTITNDD  319 (319)
Q Consensus       297 ~~p~------------------------------------g~~~lG~~~~~~VtI~ddd  319 (319)
                      ++|.                                    |+|+||++++++|+|.+|+
T Consensus       617 s~P~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~iae~gkp~LGe~tk~~V~I~es~  675 (928)
T TIGR00845       617 GEPRWAKRGIKAALLLNETITDDDQKLTSKEEEERRIAEMGKPRLGEHTKLEVIIEESY  675 (928)
T ss_pred             cCCcccccccccchhccccccccccccccccchhHHHHhcCCCcCCCceeEEEEEeecH
Confidence            9987                                    8899999999999999885

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
>KOG1306|consensus Back     alignment and domain information
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4 Back     alignment and domain information
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4 Back     alignment and domain information
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells Back     alignment and domain information
>TIGR00845 caca sodium/calcium exchanger 1 Back     alignment and domain information
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells Back     alignment and domain information
>KOG1306|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
3us9_A295 Crystal Structure Of The Ncx1 Intracellular Tandem 2e-23
3rb7_A298 Crystal Structure Of Cbd12 From Calx1.2 Length = 29 1e-21
3rb7_A 298 Crystal Structure Of Cbd12 From Calx1.2 Length = 29 4e-10
3rb5_A298 Crystal Structure Of Calcium Binding Domain Cbd12 O 2e-21
3rb5_A 298 Crystal Structure Of Calcium Binding Domain Cbd12 O 3e-10
3ead_A137 Crystal Structure Of Calx-Cbd1 Length = 137 4e-10
2dpk_A152 The Crystal Structure Of The Primary Ca2+ Sensor Of 6e-10
2dpk_A152 The Crystal Structure Of The Primary Ca2+ Sensor Of 3e-08
2fws_A139 First Ca2+ Binding Domain Of The Na,Ca-Exchanger (N 6e-10
2fws_A139 First Ca2+ Binding Domain Of The Na,Ca-Exchanger (N 2e-08
3gin_A160 Crystal Structure Of E454k-Cbd1 Length = 160 2e-09
3gin_A160 Crystal Structure Of E454k-Cbd1 Length = 160 1e-07
2fwu_A157 Second Ca2+ Binding Domain Of The Na,Ca-Exchanger ( 4e-09
2kls_A164 Apo-Form Of The Second Ca2+ Binding Domain Of Ncx1. 4e-09
2qvk_A192 The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exch 4e-09
3e9t_A114 Crystal Structure Of Apo-Form Calx Cbd1 Domain Leng 6e-09
2lt9_A157 The Solution Structure Of Ca2+ Binding Domain 2b Of 1e-08
3e9u_A162 Crystal Structure Of Calx Cbd2 Domain Length = 162 2e-08
2klt_A163 Second Ca2+ Binding Domain Of Ncx1.3 Length = 163 3e-08
3fq4_A123 Crystal Structure Of The Calx-Beta Domain Of Integr 7e-07
>pdb|3US9|A Chain A, Crystal Structure Of The Ncx1 Intracellular Tandem Calcium Binding Domains(Cbd12) Length = 295 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 16/219 (7%)
Query: 97  FHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENE 155
           F   T    E+ G+  + I+R G +L N   V   + DG+A  G  Y+    TVVFK  E
Sbjct: 14  FEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGE 73
Query: 156 TEKFVTIRIINDEKWDPVEEFFLRLTLLNKSAD--------------MVKLGGLNIMEVT 201
           T+K + + II+D+ ++  + F + L+ +  S++              +  LG  +   VT
Sbjct: 74  TQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTATVT 133
Query: 202 IIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDYKG 260
           I DDD  GI  FE+    V ES G++ + +LRTSG+ G+V V +KT++ TA     D++ 
Sbjct: 134 IFDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFED 193
Query: 261 GSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
             G + F++ E+ + + + +IDD + EK++ F +++ EP
Sbjct: 194 TCGELEFQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEP 232
>pdb|3RB7|A Chain A, Crystal Structure Of Cbd12 From Calx1.2 Length = 298 Back     alignment and structure
>pdb|3RB7|A Chain A, Crystal Structure Of Cbd12 From Calx1.2 Length = 298 Back     alignment and structure
>pdb|3RB5|A Chain A, Crystal Structure Of Calcium Binding Domain Cbd12 Of Calx1.1 Length = 298 Back     alignment and structure
>pdb|3RB5|A Chain A, Crystal Structure Of Calcium Binding Domain Cbd12 Of Calx1.1 Length = 298 Back     alignment and structure
>pdb|3EAD|A Chain A, Crystal Structure Of Calx-Cbd1 Length = 137 Back     alignment and structure
>pdb|2DPK|A Chain A, The Crystal Structure Of The Primary Ca2+ Sensor Of The Na+CA2+ EXCHANGER Length = 152 Back     alignment and structure
>pdb|2DPK|A Chain A, The Crystal Structure Of The Primary Ca2+ Sensor Of The Na+CA2+ EXCHANGER Length = 152 Back     alignment and structure
>pdb|2FWS|A Chain A, First Ca2+ Binding Domain Of The Na,Ca-Exchanger (Ncx1) Length = 139 Back     alignment and structure
>pdb|2FWS|A Chain A, First Ca2+ Binding Domain Of The Na,Ca-Exchanger (Ncx1) Length = 139 Back     alignment and structure
>pdb|3GIN|A Chain A, Crystal Structure Of E454k-Cbd1 Length = 160 Back     alignment and structure
>pdb|3GIN|A Chain A, Crystal Structure Of E454k-Cbd1 Length = 160 Back     alignment and structure
>pdb|2FWU|A Chain A, Second Ca2+ Binding Domain Of The Na,Ca-Exchanger (Ncx1) Length = 157 Back     alignment and structure
>pdb|2KLS|A Chain A, Apo-Form Of The Second Ca2+ Binding Domain Of Ncx1.4 Length = 164 Back     alignment and structure
>pdb|2QVK|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger Is Essential For Regulation: Crystal Structures And Mutational Analysis Length = 192 Back     alignment and structure
>pdb|3E9T|A Chain A, Crystal Structure Of Apo-Form Calx Cbd1 Domain Length = 114 Back     alignment and structure
>pdb|2LT9|A Chain A, The Solution Structure Of Ca2+ Binding Domain 2b Of The Third Isoform Of The Na+CA2+ EXCHANGER Length = 157 Back     alignment and structure
>pdb|3E9U|A Chain A, Crystal Structure Of Calx Cbd2 Domain Length = 162 Back     alignment and structure
>pdb|2KLT|A Chain A, Second Ca2+ Binding Domain Of Ncx1.3 Length = 163 Back     alignment and structure
>pdb|3FQ4|A Chain A, Crystal Structure Of The Calx-Beta Domain Of Integrin Beta4 Length = 123 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
3rb5_A298 Na/Ca exchange protein; CBD12, calcium binding and 8e-52
3rb5_A 298 Na/Ca exchange protein; CBD12, calcium binding and 4e-28
3rb5_A298 Na/Ca exchange protein; CBD12, calcium binding and 1e-15
3us9_A295 Sodium/calcium exchanger 1; beta-sandwich, calcium 2e-51
3us9_A 295 Sodium/calcium exchanger 1; beta-sandwich, calcium 8e-22
3us9_A295 Sodium/calcium exchanger 1; beta-sandwich, calcium 7e-15
3e9t_A114 Na/Ca exchange protein; CBD1, CALX, membrane, tran 1e-35
3e9t_A114 Na/Ca exchange protein; CBD1, CALX, membrane, tran 2e-22
3fso_A123 Integrin beta-4, GP150; immunoglobulin fold, cell 3e-35
3fso_A123 Integrin beta-4, GP150; immunoglobulin fold, cell 2e-20
3ead_A137 Na/Ca exchange protein; CBD1, calcium regulation, 4e-35
3ead_A137 Na/Ca exchange protein; CBD1, calcium regulation, 6e-30
3gin_A160 Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calci 6e-31
3gin_A160 Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calci 1e-24
2lt9_A157 Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CB 2e-28
2lt9_A157 Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CB 1e-18
2qvk_A192 CBD2, sodium/calcium exchanger 1; calcium binding 2e-27
2qvk_A192 CBD2, sodium/calcium exchanger 1; calcium binding 4e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Length = 298 Back     alignment and structure
 Score =  172 bits (436), Expect = 8e-52
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 93  AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFK 152
             + F      V E+ G F+V ++R G++   A V  ++ DG+A  G  +      + F 
Sbjct: 10  IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFP 69

Query: 153 ENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQ 212
               E+   I +I+D+ ++  E F++RL   ++     KL    I  V I+DDD  GI  
Sbjct: 70  PGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGV---KLAVPMIATVMILDDDHAGIFA 126

Query: 213 FEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEV 272
           F    + + ES G   + ++R SG+ G V V + T + TA  S+DY+G  G + F++ E 
Sbjct: 127 FTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNES 186

Query: 273 RRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
            + +++ I+++   EKD  F+V + EP            A     + 
Sbjct: 187 EKFIDLFILEESSYEKDVSFKVHIGEPRLAP---DDELAAKIKEVEK 230
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Length = 298 Back     alignment and structure
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Length = 298 Back     alignment and structure
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A Length = 295 Back     alignment and structure
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A Length = 295 Back     alignment and structure
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A Length = 295 Back     alignment and structure
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster} Length = 114 Back     alignment and structure
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster} Length = 114 Back     alignment and structure
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} PDB: 3fq4_A 3h6a_A Length = 123 Back     alignment and structure
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} PDB: 3fq4_A 3h6a_A Length = 123 Back     alignment and structure
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} Length = 137 Back     alignment and structure
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} Length = 137 Back     alignment and structure
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A Length = 160 Back     alignment and structure
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A Length = 160 Back     alignment and structure
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium binding domain binding protein; NMR {Mus musculus} Length = 157 Back     alignment and structure
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium binding domain binding protein; NMR {Mus musculus} Length = 157 Back     alignment and structure
>2qvk_A CBD2, sodium/calcium exchanger 1; calcium binding domain, metal binding protein; 1.45A {Canis lupus familiaris} PDB: 2qvm_A 2fwu_A 2kls_A Length = 192 Back     alignment and structure
>2qvk_A CBD2, sodium/calcium exchanger 1; calcium binding domain, metal binding protein; 1.45A {Canis lupus familiaris} PDB: 2qvm_A 2fwu_A 2kls_A Length = 192 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
3rb5_A298 Na/Ca exchange protein; CBD12, calcium binding and 100.0
3us9_A295 Sodium/calcium exchanger 1; beta-sandwich, calcium 100.0
3ead_A137 Na/Ca exchange protein; CBD1, calcium regulation, 100.0
3gin_A160 Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calci 99.97
3e9t_A114 Na/Ca exchange protein; CBD1, CALX, membrane, tran 99.96
3gin_A160 Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calci 99.96
3fso_A123 Integrin beta-4, GP150; immunoglobulin fold, cell 99.95
3fso_A123 Integrin beta-4, GP150; immunoglobulin fold, cell 99.95
3e9t_A114 Na/Ca exchange protein; CBD1, CALX, membrane, tran 99.95
3ead_A137 Na/Ca exchange protein; CBD1, calcium regulation, 99.95
2qvk_A192 CBD2, sodium/calcium exchanger 1; calcium binding 99.94
2lt9_A157 Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CB 99.9
3rb5_A 298 Na/Ca exchange protein; CBD12, calcium binding and 99.91
2qvk_A192 CBD2, sodium/calcium exchanger 1; calcium binding 99.9
2lt9_A157 Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CB 99.82
3us9_A 295 Sodium/calcium exchanger 1; beta-sandwich, calcium 99.86
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 95.26
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 93.79
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 93.69
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 93.5
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 92.51
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 92.44
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 89.34
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 87.22
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 86.95
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 85.85
3ubh_A 419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 84.07
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 83.98
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 83.66
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 83.04
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 82.2
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Back     alignment and structure
Probab=100.00  E-value=1.2e-53  Score=399.69  Aligned_cols=230  Identities=28%  Similarity=0.463  Sum_probs=199.3

Q ss_pred             cCCCCCeeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEe
Q psy5085          86 IETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRII  165 (319)
Q Consensus        86 ~~~d~~~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~Ii  165 (319)
                      +++|++++.|+|++++|+|.|++|.+.|+|.|+|+..++++|+|.|.+|||.+|.||.+.+|+|+|+||+++|+|+|+|+
T Consensus         3 ~~ddd~~g~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~y~T~~GTA~ag~Dy~~~~gtl~F~~Get~kti~V~I~   82 (298)
T 3rb5_A            3 DEEADDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIEVI   82 (298)
T ss_dssp             --------CEEESSSEEEEETTSCCEECCEEECSCCSSCEEEEEEEEESSSCBTTTBCCCEEEEEECTTCCEECCEECBC
T ss_pred             CCCCCCceEEEEeCCEEEEecCceEEEEEEEEECCCCccEEEEEEeeCCccCCCCCccccceEEEECCCceEEEEEEEEe
Confidence            45568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCceEEEEEEE-eecCCCCcccccceeeeEEEEeeCCCCceeeeeecceeecCCCceEEEeEEecCCCCCcEEEE
Q psy5085         166 NDEKWDPVEEFFLRLT-LLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVK  244 (319)
Q Consensus       166 dD~i~E~dE~F~v~L~-~~~~~~~~~~lg~~~~a~VtI~Ddd~~g~~~F~~~~~~V~E~~g~~~v~V~R~~g~~g~v~V~  244 (319)
                      ||.++|++|+|.|.|+ |.+++.    ||.++.++|+|+|||++|+|+|..+.|.|.|+.|.+.++|.|+++..+.++|.
T Consensus        83 dD~~~E~dEtF~v~Ls~p~~~a~----lg~~~~atvtI~ddD~~g~~~f~~~~~~V~E~~g~~~~~V~Rs~~~~g~vtV~  158 (298)
T 3rb5_A           83 DDDVFEEDECFYIRLFNPSEGVK----LAVPMIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVP  158 (298)
T ss_dssp             CCSSCCCCEEEEEEEECCCTTCC----BCSCSEEEEEEECCCCCCEEECSCSEEEECTTCCCEEEEEEEESCCCSCEEEE
T ss_pred             CCCCccCcEEEEEEEeCCCCCcE----ECCCceEEEEEeccccccccccccccEEeecCCceEEEEEEEEecCCCCEEEE
Confidence            9999999999999999 755443    99999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeccccCCCcccccceEEEEeCCeeEEEEEEEeecCCCCCCCeEEEEEEeCC-------------------------
Q psy5085         245 WKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP-------------------------  299 (319)
Q Consensus       245 ~~t~dGTA~~G~DY~~~~g~l~F~~get~k~i~I~IidD~~~E~dE~F~v~L~~p-------------------------  299 (319)
                      |.|.+|||++|.||.+.+|+|+|++||++|+|.|+|+||.++|++|+|.|.|++|                         
T Consensus       159 ~~T~dGTA~~g~Dy~~~~gtltF~~Get~kti~V~IidD~~~E~dEtF~v~Ls~p~~~~~~~~~~~~~~~~~~~~~~~~~  238 (298)
T 3rb5_A          159 YWTENDTATESKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPDDELAAKIKEVEKKPVQDLTE  238 (298)
T ss_dssp             EEEEEC-----CCSCCCEEEEEECTTCCEEEEEEC---------CEEEEEEECCCEECTTSHHHHHHHHHTTSBTTTCCH
T ss_pred             EEecCCccCCCccceecccEEEECCCCEEEEEEEEEeCCCcccCceEEEEEEcCCccccccccccccccccccccchhhh
Confidence            9999999999999999999999999999999999999999999999999999999                         


Q ss_pred             ------CCCeeeeccceEEEEEeCCC
Q psy5085         300 ------TGGAKIGVVNHCAVTITNDD  319 (319)
Q Consensus       300 ------~g~~~lG~~~~~~VtI~ddd  319 (319)
                            .|+|+||++++++|+|.+|+
T Consensus       239 ~~~~~~~g~p~lg~~~~~~v~i~es~  264 (298)
T 3rb5_A          239 LDRILLLSKPRNGELTTAYVRIRESQ  264 (298)
T ss_dssp             HHHHHHTTSCEECSCCEEEEEEC---
T ss_pred             hhhhhhcCCCccCCceEEEEEEEECH
Confidence                  38999999999999999985
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A Back     alignment and structure
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0 Back     alignment and structure
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A Back     alignment and structure
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster} SCOP: b.1.27.0 Back     alignment and structure
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A Back     alignment and structure
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} SCOP: b.1.27.0 PDB: 3fq4_A 3h6a_A Back     alignment and structure
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} SCOP: b.1.27.0 PDB: 3fq4_A 3h6a_A Back     alignment and structure
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster} SCOP: b.1.27.0 Back     alignment and structure
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0 Back     alignment and structure
>2qvk_A CBD2, sodium/calcium exchanger 1; calcium binding domain, metal binding protein; 1.45A {Canis lupus familiaris} PDB: 2qvm_A 2fwu_A 2kls_A Back     alignment and structure
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium binding domain binding protein; NMR {Mus musculus} Back     alignment and structure
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Back     alignment and structure
>2qvk_A CBD2, sodium/calcium exchanger 1; calcium binding domain, metal binding protein; 1.45A {Canis lupus familiaris} PDB: 2qvm_A 2fwu_A 2kls_A Back     alignment and structure
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium binding domain binding protein; NMR {Mus musculus} Back     alignment and structure
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d2fwua1157 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {D 2e-23
d2fwua1157 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {D 2e-10
d2dpka1133 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {D 1e-20
d2dpka1133 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {D 2e-15
>d2fwua1 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} Length = 157 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CalX-like
family: CalX-beta domain
domain: Sodium/calcium exchanger 1
species: Dog (Canis familiaris) [TaxId: 9615]

 Score = 91.7 bits (227), Expect = 2e-23
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 208 PGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKT-AISSRDYKGGSGVIT 266
            GI  FE+    V ES G++ + +LRTSG+ G+V V +KT++ T      D++   G + 
Sbjct: 2   AGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELE 61

Query: 267 FKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
           F++ E+ + + + +IDD + EK++ F +++ EP             +T   DD
Sbjct: 62  FQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGFTITEEYDD 114
>d2fwua1 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} Length = 157 Back     information, alignment and structure
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} Length = 133 Back     information, alignment and structure
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} Length = 133 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d2dpka1133 Sodium/calcium exchanger 1 {Dog (Canis familiaris) 99.93
d2dpka1133 Sodium/calcium exchanger 1 {Dog (Canis familiaris) 99.89
d2fwua1157 Sodium/calcium exchanger 1 {Dog (Canis familiaris) 99.87
d2fwua1157 Sodium/calcium exchanger 1 {Dog (Canis familiaris) 99.87
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CalX-like
family: CalX-beta domain
domain: Sodium/calcium exchanger 1
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=99.93  E-value=3.3e-25  Score=181.68  Aligned_cols=118  Identities=33%  Similarity=0.494  Sum_probs=107.1

Q ss_pred             CeeEEEEEeeeEEEecCCeEEEEEEEEeC-CCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCC
Q psy5085          91 NYAIIEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEK  169 (319)
Q Consensus        91 ~~~~i~F~~~~y~V~E~~g~v~vtV~R~g-~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i  169 (319)
                      |.++|+|+++.|+|.|++|.+.++|.|++ ++.+.++|.|.+.+|||.+|.||.+.+|+|+|++|++++.|+|.|++|.+
T Consensus         1 p~~~i~F~~~~~tv~E~~g~v~v~V~r~~~~~~~~v~V~~~t~~gtA~~g~Dy~~~~g~i~F~~Ge~~~~i~V~i~~D~~   80 (133)
T d2dpka1           1 PVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDDI   80 (133)
T ss_dssp             CCEEEEESCSEEEEETTSSEEEEEEEEESSCTTSCEEEEEEEEESSSCBTTTBCCCEEEEEECTTCCEEEEEEEBCCCSS
T ss_pred             CCCEEEEcCCEEEEecCCcEEEEEEEEeCCCcCceEEEEEEEcCCcccccceEeccCCeEEECCCCeEEEEEEEEEcCCC
Confidence            46899999999999999999999999996 57899999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEE-eecCCC------------Cccc-ccceeeeEEEEeeCCCC
Q psy5085         170 WDPVEEFFLRLT-LLNKSA------------DMVK-LGGLNIMEVTIIDDDDP  208 (319)
Q Consensus       170 ~E~dE~F~v~L~-~~~~~~------------~~~~-lg~~~~a~VtI~Ddd~~  208 (319)
                      +|.+|+|+|+|+ +.++..            ...+ +|.++.++|+|+|||++
T Consensus        81 ~E~~E~F~v~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~atvtI~ddD~a  133 (133)
T d2dpka1          81 FEEDENFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTATVTIFDDDHA  133 (133)
T ss_dssp             CCCCEEEEEEEEEEEECCC------------CTTEEECSCCEEEEEEECCCCC
T ss_pred             CcCCEEEEEEEECCcCCccccccceeeecccCccceecCCCEEEEEEcCCCCC
Confidence            999999999999 775421            1233 78889999999999985
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2fwua1 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2fwua1 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure