Psyllid ID: psy5087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MAQSKLNDFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGLIQDKESRVMFTPDF
cccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccEEEEccccEEEEEEcccccccEEEccccEEEccccccEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEccccHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEccccccEEcccEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEcccccccccccHHHHccccEEEEEccccccccc
cHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEEEcccccEEEEEcccccccccccccccHcEEEEEEEEcccccHHHcHHHHHHccccccHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEcccccccccccEEEcHHHHHHHHHcccEEEEEEccEEEEcccccccccccccHcccHcHHHcccHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEccHHHHHHcHccccccEEEEcccc
maqsklndfagrfgkgpkgvgVGLKLAALAGAAaygvsqsmftveggHRAIMFSRIggvqnnvfaeglhfrlpwfqypiiydirsrprkissptgskdlqMVNISLRvlarpdasklpkvyqhlgldfdekvLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKdfniilddvsitdlsfgkdYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLavgqnpgylKLRKIRAAQNIAHTRLHYVqaggqnqtqdyflldVTNGILWIRGLQVNIIIVpehiylssgdpvpvdeggnitllpsllpllspyyanrvTEYRIIRQARhgavyfssnkvaimRCTPQQLQagliqdkesrvmftpdf
maqsklndfagrfgkgpkGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKIssptgskdlqmVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLqagliqdkesrvmftpdf
MAQSKLNDFAGRFgkgpkgvgvglklaalagaaaygvSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTaaveakqvaqqeaqravfvveRAKQEKQQKILQaegeaeaakklglaVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITllpsllpllspYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGLIQDKESRVMFTPDF
************FGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIR***************QMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVV**********************KLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGLI*************
********************GVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVV******************EAAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYV*******TQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDP**V**GGNITLLPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGLIQDKESR*******
MAQSKLNDFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGLIQDKESRVMFTPDF
****KLNDFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGLIQDKESRVMFTPDF
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAQSKLNDFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAxxxxxxxxxxxxxxxxxxxxxGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGLIQDKESRVMFTPDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query388 2.2.26 [Sep-21-2011]
Q5XIH7299 Prohibitin-2 OS=Rattus no yes N/A 0.675 0.876 0.753 1e-113
O35129299 Prohibitin-2 OS=Mus muscu yes N/A 0.675 0.876 0.753 1e-113
Q99623299 Prohibitin-2 OS=Homo sapi yes N/A 0.675 0.876 0.753 1e-113
Q5RB19299 Prohibitin-2 OS=Pongo abe yes N/A 0.675 0.876 0.753 1e-113
Q2HJ97299 Prohibitin-2 OS=Bos tauru yes N/A 0.675 0.876 0.746 1e-113
A9UMS3301 Prohibitin-2 OS=Xenopus t yes N/A 0.675 0.870 0.742 1e-111
Q5ZMN3301 Prohibitin-2 OS=Gallus ga yes N/A 0.721 0.930 0.706 1e-108
P50093294 Mitochondrial prohibitin yes N/A 0.577 0.761 0.736 4e-94
O94550288 Prohibitin-2 OS=Schizosac yes N/A 0.587 0.791 0.592 3e-77
Q54Q31293 Prohibitin-2 OS=Dictyoste yes N/A 0.574 0.761 0.605 3e-77
>sp|Q5XIH7|PHB2_RAT Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=1 Back     alignment and function desciption
 Score =  409 bits (1052), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/264 (75%), Positives = 234/264 (88%), Gaps = 2/264 (0%)

Query: 1   MAQSKLNDFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQ 60
           MAQ+ L D AGR   GP+G+G  LKL   AGA AYGV +S+FTVEGGHRAI F+RIGGVQ
Sbjct: 1   MAQN-LKDLAGRLPSGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQ 59

Query: 61  -NNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPK 119
            + + AEGLHFR+PWFQYPIIYDIR+RPRKISSPTGSKDLQMVNISLRVL+RP+A +LP 
Sbjct: 60  QDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPS 119

Query: 120 VYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIIL 179
           +YQ LGLD++E+VLPSI NEVLKSVVAKFNASQLITQR QVSLL++ +L ERAKDF++IL
Sbjct: 120 MYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLIL 179

Query: 180 DDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLG 239
           DDV+IT+LSF ++YTAAVEAKQVAQQEAQRA F+VE+AKQE++QKI+QAEGEAEAAK LG
Sbjct: 180 DDVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLG 239

Query: 240 LAVGQNPGYLKLRKIRAAQNIAHT 263
            A+ +NPGY+KLRKIRAAQNI+ T
Sbjct: 240 EALSKNPGYIKLRKIRAAQNISKT 263
Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.
Rattus norvegicus (taxid: 10116)
>sp|O35129|PHB2_MOUSE Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1 Back     alignment and function description
>sp|Q99623|PHB2_HUMAN Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2 Back     alignment and function description
>sp|Q5RB19|PHB2_PONAB Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1 Back     alignment and function description
>sp|Q2HJ97|PHB2_BOVIN Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1 Back     alignment and function description
>sp|A9UMS3|PHB2_XENTR Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZMN3|PHB2_CHICK Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 SV=1 Back     alignment and function description
>sp|P50093|PHB2_CAEEL Mitochondrial prohibitin complex protein 2 OS=Caenorhabditis elegans GN=phb-2 PE=1 SV=2 Back     alignment and function description
>sp|O94550|PHB2_SCHPO Prohibitin-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=phb2 PE=1 SV=2 Back     alignment and function description
>sp|Q54Q31|PHB2_DICDI Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
242006652300 Prohibitin-2, putative [Pediculus humanu 0.724 0.936 0.750 1e-123
121543955297 putative prohibitin [Maconellicoccus hir 0.677 0.885 0.866 1e-122
157131967354 prohibitin [Aedes aegypti] gi|108871324| 0.677 0.742 0.814 1e-120
240849111328 prohibitin-like [Acyrthosiphon pisum] gi 0.667 0.789 0.8 1e-120
157131969298 prohibitin [Aedes aegypti] gi|157138152| 0.677 0.882 0.814 1e-120
157131971299 prohibitin [Aedes aegypti] gi|108871326| 0.677 0.879 0.814 1e-120
239788311296 ACYPI006725 [Acyrthosiphon pisum] 0.667 0.875 0.8 1e-119
312379869322 hypothetical protein AND_08169 [Anophele 0.698 0.841 0.794 1e-118
332376140299 unknown [Dendroctonus ponderosae] 0.677 0.879 0.821 1e-118
289739655299 prohibitin-like protein [Glossina morsit 0.726 0.943 0.742 1e-118
>gi|242006652|ref|XP_002424162.1| Prohibitin-2, putative [Pediculus humanus corporis] gi|212507492|gb|EEB11424.1| Prohibitin-2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/289 (75%), Positives = 252/289 (87%), Gaps = 8/289 (2%)

Query: 1   MAQSKLNDFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQ 60
           M+QSKLNDFA RF K PKGVG G+KL  LAG A YG++QS++TVEGGHRAI+FSRIGG+Q
Sbjct: 1   MSQSKLNDFANRFMKSPKGVGTGMKLLGLAGLAGYGMTQSLYTVEGGHRAIIFSRIGGIQ 60

Query: 61  NNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKV 120
             V++EGLHF++PW +YPIIYDIRSRPRKISSPTGSKDLQMV ISLRVL+RPDA  LP +
Sbjct: 61  KEVYSEGLHFKIPWLEYPIIYDIRSRPRKISSPTGSKDLQMVMISLRVLSRPDAINLPTM 120

Query: 121 YQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILD 180
           Y+ LGLD+DEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLV+ +L ERA+DFNIILD
Sbjct: 121 YRTLGLDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVRRELTERARDFNIILD 180

Query: 181 DVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGL 240
           DVSIT+LSFGK+YTAAVEAKQVAQQEAQRA FVVERAKQE+QQKI+QAEGEAEAAK LG 
Sbjct: 181 DVSITELSFGKEYTAAVEAKQVAQQEAQRAAFVVERAKQERQQKIVQAEGEAEAAKMLGE 240

Query: 241 AVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQ---TQDYFLLDVTN 286
           AV QNPGYLKLRKIRAAQ+I+      + A  QN+   + +  +L++++
Sbjct: 241 AVSQNPGYLKLRKIRAAQSISR-----IVAASQNKVFLSGNSLMLNISD 284

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|121543955|gb|ABM55642.1| putative prohibitin [Maconellicoccus hirsutus] Back     alignment and taxonomy information
>gi|157131967|ref|XP_001662384.1| prohibitin [Aedes aegypti] gi|108871324|gb|EAT35549.1| AAEL012282-PC [Aedes aegypti] Back     alignment and taxonomy information
>gi|240849111|ref|NP_001155675.1| prohibitin-like [Acyrthosiphon pisum] gi|239788313|dbj|BAH70845.1| ACYPI006725 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157131969|ref|XP_001662385.1| prohibitin [Aedes aegypti] gi|157138152|ref|XP_001664150.1| prohibitin [Aedes aegypti] gi|108869552|gb|EAT33777.1| AAEL013952-PA [Aedes aegypti] gi|108871325|gb|EAT35550.1| AAEL012282-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157131971|ref|XP_001662386.1| prohibitin [Aedes aegypti] gi|108871326|gb|EAT35551.1| AAEL012282-PB [Aedes aegypti] Back     alignment and taxonomy information
>gi|239788311|dbj|BAH70844.1| ACYPI006725 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|312379869|gb|EFR26026.1| hypothetical protein AND_08169 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|332376140|gb|AEE63210.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|289739655|gb|ADD18575.1| prohibitin-like protein [Glossina morsitans morsitans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
FB|FBgn0010551338 l(2)03709 "lethal (2) 03709" [ 0.677 0.778 0.609 4.1e-81
UNIPROTKB|F5GY37267 PHB2 "Prohibitin-2" [Homo sapi 0.675 0.981 0.583 5.7e-75
UNIPROTKB|J3KPX7299 PHB2 "Prohibitin-2" [Homo sapi 0.675 0.876 0.583 5.7e-75
UNIPROTKB|Q99623299 PHB2 "Prohibitin-2" [Homo sapi 0.675 0.876 0.583 5.7e-75
MGI|MGI:102520299 Phb2 "prohibitin 2" [Mus muscu 0.675 0.876 0.583 5.7e-75
RGD|620203299 Phb2 "prohibitin 2" [Rattus no 0.675 0.876 0.583 5.7e-75
UNIPROTKB|Q2HJ97299 PHB2 "Prohibitin-2" [Bos tauru 0.675 0.876 0.583 7.3e-75
UNIPROTKB|E2RGN6299 PHB2 "Uncharacterized protein" 0.675 0.876 0.583 7.3e-75
UNIPROTKB|I3LQN4299 PHB2 "Uncharacterized protein" 0.675 0.876 0.583 7.3e-75
UNIPROTKB|Q5ZMN3301 PHB2 "Prohibitin-2" [Gallus ga 0.716 0.923 0.555 2.5e-74
FB|FBgn0010551 l(2)03709 "lethal (2) 03709" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 161/264 (60%), Positives = 193/264 (73%)

Query:     1 MAQSKLNDFAGRFXXXXX-XXXXXXXXXXXXXXXXXXXSQSMFTVEGGHRAIMFSRIGGV 59
             MAQSKLND AG+                          SQS++TVEGGHRAI+FSR+GG+
Sbjct:     1 MAQSKLNDLAGKLGKGGPPGLGIGLKVLAAVGAAAYGVSQSLYTVEGGHRAIIFSRLGGI 60

Query:    60 QNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPK 119
             Q+++++EGLH R+PWFQYPIIYDIRSRPRKISSPTGSKDLQM+NISLRVL+RPD+  LP 
Sbjct:    61 QSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMINISLRVLSRPDSLNLPY 120

Query:   120 VYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIIL 179
             +++ LG+D+DEKVLPSICNEVLKSV+AKFNASQLITQRQQVSLL++ +L+ERA+DFNIIL
Sbjct:   121 LHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQRQQVSLLIRKELVERARDFNIIL 180

Query:   180 DDVSITDLSFGKDYTXXXXXXXXXXXXXXXXXXXXXRAKQEKQQKILQXXXXXXXXXXXX 239
             DDVS+T+LSFGK+YT                     RAKQEKQQKI+Q            
Sbjct:   181 DDVSLTELSFGKEYTAAIEAKQVAQQEAQRAVFFVERAKQEKQQKIVQAEGEAEAAKMLG 240

Query:   240 XXVGQNPGYLKLRKIRAAQNIAHT 263
               V QNP YLKLRK+RAAQ+IA T
Sbjct:   241 LAVKQNPAYLKLRKLRAAQSIART 264
GO:0016020 "membrane" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0005811 "lipid particle" evidence=IDA
UNIPROTKB|F5GY37 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KPX7 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q99623 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:102520 Phb2 "prohibitin 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620203 Phb2 "prohibitin 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ97 PHB2 "Prohibitin-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGN6 PHB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQN4 PHB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMN3 PHB2 "Prohibitin-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A9UMS3PHB2_XENTRNo assigned EC number0.74240.67520.8704yesN/A
Q99623PHB2_HUMANNo assigned EC number0.75370.67520.8762yesN/A
Q5XIH7PHB2_RATNo assigned EC number0.75370.67520.8762yesN/A
O35129PHB2_MOUSENo assigned EC number0.75370.67520.8762yesN/A
P50085PHB2_YEASTNo assigned EC number0.56440.57980.7258yesN/A
Q9ZNT7PHB2_ARATHNo assigned EC number0.52010.63910.8671yesN/A
Q2HJ97PHB2_BOVINNo assigned EC number0.74620.67520.8762yesN/A
Q5RB19PHB2_PONABNo assigned EC number0.75370.67520.8762yesN/A
O94550PHB2_SCHPONo assigned EC number0.59210.58760.7916yesN/A
Q5ZMN3PHB2_CHICKNo assigned EC number0.70680.72160.9302yesN/A
P50093PHB2_CAEELNo assigned EC number0.73660.57730.7619yesN/A
Q54Q31PHB2_DICDINo assigned EC number0.60530.57470.7610yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
cd03401196 cd03401, Band_7_prohibitin, Band_7_prohibitin 1e-126
smart00244160 smart00244, PHB, prohibitin homologues 8e-30
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 6e-26
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 3e-23
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 1e-20
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 2e-12
cd03400124 cd03400, Band_7_1, A subgroup of the band 7 domain 7e-11
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 6e-09
TIGR01932317 TIGR01932, hflC, HflC protein 5e-08
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 4e-06
COG2268 548 COG2268, COG2268, Uncharacterized protein conserve 2e-05
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 1e-04
PRK11029334 PRK11029, PRK11029, FtsH protease regulator HflC; 0.004
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information 
 Score =  360 bits (926), Expect = e-126
 Identities = 136/196 (69%), Positives = 172/196 (87%)

Query: 40  SMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDL 99
           S++ V+GGHRA++F+R GGV++ V+ EGLHFR+PWFQ PII+D+R+RPR I S TGSKDL
Sbjct: 1   SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDL 60

Query: 100 QMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 159
           QMVNI+LRVL RPDAS+LP++YQ+LG D+DE+VLPSI NEVLK+VVA+F A +LITQR++
Sbjct: 61  QMVNITLRVLFRPDASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREE 120

Query: 160 VSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQ 219
           VS L++  L ERAKDF IILDDVSIT L+F K++T AVEAKQVAQQEA+RA FVVE+A+Q
Sbjct: 121 VSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQ 180

Query: 220 EKQQKILQAEGEAEAA 235
           EKQ  +++AEGEAEAA
Sbjct: 181 EKQAAVIRAEGEAEAA 196

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology. Length = 196
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|233644 TIGR01932, hflC, HflC protein Back     alignment and domain information
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 388
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
KOG3090|consensus290 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
KOG3083|consensus271 100.0
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 99.97
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.97
KOG2621|consensus288 99.95
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.95
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.94
KOG2620|consensus301 99.92
KOG2962|consensus322 99.87
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.83
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.8
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.75
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.63
KOG2668|consensus428 99.49
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.44
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.41
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 98.72
KOG3597|consensus 442 98.64
PTZ00491850 major vault protein; Provisional 97.9
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 97.18
PRK13665316 hypothetical protein; Provisional 97.04
KOG3597|consensus442 96.85
COG1580159 FliL Flagellar basal body-associated protein [Cell 95.23
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 89.38
PRK12785166 fliL flagellar basal body-associated protein FliL; 88.33
COG4864328 Uncharacterized protein conserved in bacteria [Fun 87.89
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 87.75
PRK11029334 FtsH protease regulator HflC; Provisional 87.67
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 86.87
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 86.3
PRK06654181 fliL flagellar basal body-associated protein FliL; 84.53
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 83.28
PF0374899 FliL: Flagellar basal body-associated protein FliL 81.27
PRK05696170 fliL flagellar basal body-associated protein FliL; 80.85
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 80.07
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.6e-43  Score=335.20  Aligned_cols=245  Identities=24%  Similarity=0.379  Sum_probs=211.6

Q ss_pred             HHHhhcceEEecCCeEEEEEeecCceeee------EecCceeEEccccceeEEEEeeeeeeeecc-ccccCCccEEEEEE
Q psy5087          34 AYGVSQSMFTVEGGHRAIMFSRIGGVQNN------VFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISL  106 (388)
Q Consensus        34 ~~~l~~s~~~V~~ge~gVv~~~fG~~~~~------~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~-~~~tkD~~~v~v~v  106 (388)
                      ++++++|+++|++||+|||+ +||++.+.      +++||+||++||++++..+|+|.+.++.+. .+.|+|+..|++++
T Consensus        13 ~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~   91 (334)
T PRK11029         13 LVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDS   91 (334)
T ss_pred             HHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEE
Confidence            44567899999999999998 99999754      489999999999999999999999998874 36899999999999


Q ss_pred             EEEEeeCCCCHHHHHHHhCC-cc--cccccchHHHHHHHHHhhcCCHHHHHH-hHHHHHHHHHHHHHHH-----------
Q psy5087         107 RVLARPDASKLPKVYQHLGL-DF--DEKVLPSICNEVLKSVVAKFNASQLIT-QRQQVSLLVKSQLIER-----------  171 (388)
Q Consensus       107 ~v~~r~~~~d~~~~~~~~g~-~~--~~~~l~~~~~~~lR~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~-----------  171 (388)
                      .++||  +.||.++|.+++. +.  ....|.+.+++++|+++|+++++++++ +|++|..++++.+++.           
T Consensus        92 ~V~yr--I~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~  169 (334)
T PRK11029         92 YIKWR--ISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATP  169 (334)
T ss_pred             EEEEE--ECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccc
Confidence            99999  5799999887753 32  346788999999999999999999996 7999999999999964           


Q ss_pred             ----------------------------HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH----H--------
Q psy5087         172 ----------------------------AKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRA----V--------  211 (388)
Q Consensus       172 ----------------------------l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~----~--------  211 (388)
                                                  +.+|||+|.+|+|++++||+++.++|++++.|+++++.+    +        
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~  249 (334)
T PRK11029        170 AADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKL  249 (334)
T ss_pred             ccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                        468999999999999999999999999999999875521    1        


Q ss_pred             -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcCCCcceeehhHHHHHHHhhhccceeeccccCCCcceEEEee
Q psy5087         212 -------FVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDV  284 (388)
Q Consensus       212 -------~~~~~Aea~aea~~i~AegeAea~~~~aea~~~~p~~~~~r~i~~~~~i~~~~~~y~~~~~~~~~~d~f~~~~  284 (388)
                             ....+|+|++++++++|+|||+|+++++++|+++|+++++         .+++++|..++.  ++++.+++++
T Consensus       250 ~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~---------~~~lea~~~~~~--~~~~~~vl~~  318 (334)
T PRK11029        250 RATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAF---------IRSLRAYENSFS--GNQDVMVLSP  318 (334)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHH---------HHHHHHHHHHhc--CCCcEEEECC
Confidence                   3344588999999999999999999999999999999998         788888888773  3357899999


Q ss_pred             cCCc-eEEe
Q psy5087         285 TNGI-LWIR  292 (388)
Q Consensus       285 ~s~~-~~l~  292 (388)
                      ++++ .+++
T Consensus       319 ~~~~~~~l~  327 (334)
T PRK11029        319 DSDFFRYMK  327 (334)
T ss_pred             ChHHHHHhh
Confidence            9876 4454

>KOG3090|consensus Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3083|consensus Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2621|consensus Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>KOG2620|consensus Back     alignment and domain information
>KOG2962|consensus Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2668|consensus Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3597|consensus Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>KOG3597|consensus Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 17/115 (14%)

Query: 141 LKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAK 200
           L+SV+ + +  +L+++R ++++ ++  + E    + I +  V I D+        A+   
Sbjct: 66  LRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMAR- 124

Query: 201 QVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLA---VGQNPGYLKLR 252
              Q EA+R          E++ +I  AE E +AA+KL  A   + ++P  L+LR
Sbjct: 125 ---QAEAER----------ERRARITLAEAERQAAEKLREAAEIISEHPMALQLR 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.94
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.88
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.76
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.65
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.09
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.94  E-value=7.2e-27  Score=208.03  Aligned_cols=174  Identities=22%  Similarity=0.348  Sum_probs=146.3

Q ss_pred             ccceeEEEEeeeeeeeecc-ccccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHH
Q psy5087          74 WFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQ  152 (388)
Q Consensus        74 ~~~~v~~~d~r~~~~~~~~-~~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~e  152 (388)
                      |++++..+|+|.++++++. .+.|+|+++|++++.++||  +.||..++.+++ ++. ..+.+.+++++|+++|++++++
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yr--I~dp~~~~~~v~-~~~-~~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFR--VVDPVKAVTQVK-NYI-MATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEE--ESCHHHHHHSSS-CHH-HHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEE--ECCHHHHHHHhc-CHH-HHHHHHHHHHHHHHHccCCHHH
Confidence            6789999999999999876 4789999999999999999  568998887664 433 4578999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy5087         153 LITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEA  232 (388)
Q Consensus       153 i~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeA  232 (388)
                      ++++|++|++.+++.+++.+++|||+|.+|.|++++||+++.++|++++.              |++++++++++|+|++
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~--------------Aere~~A~i~~Aege~  143 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAE--------------AERERRARITLAEAER  143 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999987654              5667778888899999


Q ss_pred             HHHHHHHhH---hcCCCcceeehhHHHHHHHhhhcc
Q psy5087         233 EAAKKLGLA---VGQNPGYLKLRKIRAAQNIAHTRL  265 (388)
Q Consensus       233 ea~~~~aea---~~~~p~~~~~r~i~~~~~i~~~~~  265 (388)
                      +|+++.++|   |+.+|.++++|+++++.+++.+..
T Consensus       144 ~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~~~~  179 (188)
T 3bk6_A          144 QAAEKLREAAEIISEHPMALQLRTLQTISDVAGDKS  179 (188)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHTTC---------
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCC
Confidence            998888877   456899999999999888877653
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 388
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 1e-09
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 96  SKDLQMVNISLRVLAR---PDASKLPKVYQHLGLDFD--EKVLPSICNEVLKSVVAKFNA 150
           + +   + ++     +             Q LG +    + V+       L+S++     
Sbjct: 26  TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV 85

Query: 151 SQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEA 207
            Q+   R Q + LV+           I +   +I D+    DY +++   Q +   +
Sbjct: 86  EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.68
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.3e-18  Score=144.18  Aligned_cols=125  Identities=12%  Similarity=0.114  Sum_probs=106.6

Q ss_pred             eeEEEEeeeeeeeeccc-cccCCccEEEEEEEEEEeeCCCCHHHHH----HHh-CC--cccccccchHHHHHHHHHhhcC
Q psy5087          77 YPIIYDIRSRPRKISSP-TGSKDLQMVNISLRVLARPDASKLPKVY----QHL-GL--DFDEKVLPSICNEVLKSVVAKF  148 (388)
Q Consensus        77 ~v~~~d~r~~~~~~~~~-~~tkD~~~v~v~v~v~~r~~~~d~~~~~----~~~-g~--~~~~~~l~~~~~~~lR~~~~~~  148 (388)
                      ++.++|++.++++++.+ +.|+|++++.+++.++||+.  |+.+.+    ..+ +.  +..+..+.+.+++++|+++|++
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~--~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~   83 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM--TEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTL   83 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEEC--CCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEc--CcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccc
Confidence            45667899999988876 57999999999999999964  333221    222 22  3456789999999999999999


Q ss_pred             CHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHH
Q psy5087         149 NASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVA  203 (388)
Q Consensus       149 ~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~A  203 (388)
                      ++++++++|++|.+.+.+.+++.+++||++|.++.|+||++|+++.+++.++++|
T Consensus        84 ~l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          84 TVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             CHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             cHHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999887665