Psyllid ID: psy5093

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
Protein Sequence
MELLPADFINNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEcccccHcc
Coil and Loop (DISEMBL)
mellpadfinnvdffsnssnwtyididddvvtydFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLdhnwifglnwcdswRSLDVLFSTASILNLCVISLDRywaitdpltypsrmstRRAYIWIAIVWICSGGISFPAILWWRAVrneevpknkcpftdskgylifsSTISFYLPLLVMVFTYFKIYRAAVVQTkslkvgtkqvmsgstsgekELTLRIhrggtdhrhmtlhhtpsddvemdnvmsghngitrqvsntriiHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGwinsgmnpviyacwsrdfrskekilnhkispvvfllpmcmypqYLVLISLCYYVTTLVLTAPAILWWRAVrneevpknkcpftdskgylifsSTISFYLPLLVMVFTYFKIYRAAVVQTkslkvgtkqvmsgstsgekELTLRIhrggtdhrhmtlhhtpsddvemdnvmsghngitrqvsntriiHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGwinsgmnpviyacwsrdfrr
Flexible Loop (DISEMBL)
MELLPADFINNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTkslkvgtkqvmsgstsgekelTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITrqvsntriihkghivknfslsrkLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTkslkvgtkqvmsgstsgekelTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITrqvsntriihkghivknfslsrkLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLgwinsgmnpvIYACWSRDFRR
Low Complexity Region (SEG)
MELLPADFINNVDFFSNSSNWtyididddvvtydFVSNFTLERWLELAQQRtllvstlslfslvtvfGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR
Disordered region (IsUnstruct)
*****ADFINNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKV**************************************************GITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKV**************************************************GITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSR****
Disordered Region (DISOPRED)
*********NNVDFFSNSSNWTYIDIDDDV*********TLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAV************************TLRIH***************************************************************KAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAV***********************************************************************KGHIVK****************AAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR
Disordered Region (DISEMBL)
MELLPADFINNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKV************EKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKV************EKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR
Disordered Region (DISPRO)
******************************************RWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLK*************************************************************************LSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMS********************************************************************KLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDF**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELLPADFINNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	662	2.2.26 [Sep-21-2011]
Q24563	539	Dopamine receptor 2 OS=Dr	yes	N/A	0.489	0.601	0.632	1e-121
Q18775	517	Dopamine receptor 4 OS=Ca	yes	N/A	0.569	0.729	0.355	4e-65
Q93126	476	Probable G-protein couple	N/A	N/A	0.522	0.726	0.368	6e-62
P25100	572	Alpha-1D adrenergic recep	yes	N/A	0.460	0.533	0.408	2e-60
Q91175	470	Alpha-1A adrenergic recep	N/A	N/A	0.450	0.634	0.386	8e-60
P97717	514	Alpha-1B adrenergic recep	yes	N/A	0.484	0.624	0.396	2e-59
P15823	515	Alpha-1B adrenergic recep	yes	N/A	0.516	0.664	0.384	2e-59
P35368	520	Alpha-1B adrenergic recep	no	N/A	0.457	0.582	0.403	7e-59
P18841	515	Alpha-1B adrenergic recep	N/A	N/A	0.457	0.588	0.403	9e-59
Q64264	421	5-hydroxytryptamine recep	no	N/A	0.531	0.836	0.355	1e-58

>sp|Q24563|DOPR2_DROME Dopamine receptor 2 OS=Drosophila melanogaster GN=DopR2 PE=2 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/375 (63%), Positives = 276/375 (73%), Gaps = 51/375 (13%)

Query: 65  TVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNW 124
           TVFGN+LV++AV+RERYLHT+TNYFI SLA+ADCLVGLVVMPFSALYE+L++ W FG +W
Sbjct: 122 TVFGNSLVILAVIRERYLHTATNYFITSLAVADCLVGLVVMPFSALYEVLENTWFFGTDW 181

Query: 125 CDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGIS 184
           CD WRSLDVLFSTASILNLCVISLDRYWAITDP +YP RM+ +RA   IA VWICS  IS
Sbjct: 182 CDIWRSLDVLFSTASILNLCVISLDRYWAITDPFSYPMRMTVKRAAGLIAAVWICSSAIS 241

Query: 185 FPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTK 244
           FPAI+WWRA R+ E+P  KC FT+  GYL+FSSTISFYLPLLVMVFTY +IYRAAV+QT+
Sbjct: 242 FPAIVWWRAARDGEMPAYKCTFTEHLGYLVFSSTISFYLPLLVMVFTYCRIYRAAVIQTR 301

Query: 245 SLKVGTKQVMSGSTSGEKELTLRIHRGGT--DHRHM------------------------ 278
           SLK+GTKQV+    SGE +LTLRIHRGGT  D ++                         
Sbjct: 302 SLKIGTKQVLMA--SGELQLTLRIHRGGTTRDQQNQVSGGGGGGGGGGGGGGSLSHSHSH 359

Query: 279 -----------TLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSK 327
                      T   TP +  +       +NG+ R        H+ H+ KNFSLSRKL+K
Sbjct: 360 SHHHHHNHGGGTTTSTPEEPDDEPLSALHNNGLAR--------HR-HMGKNFSLSRKLAK 410

Query: 328 FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINS 387
           FAKEKKAAKTLGIVMGVFI+CWLPFFVVNLLS  C +C    + EE++SA+VTWLGWINS
Sbjct: 411 FAKEKKAAKTLGIVMGVFIICWLPFFVVNLLSGFCIECI---EHEEIVSAIVTWLGWINS 467

Query: 388 GMNPVIYACWSRDFR 402
            MNPVIYACWSRDFR
Sbjct: 468 CMNPVIYACWSRDFR 482

Receptor for dopamine. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. Also capable of generating a calcium signal. In terms of antagonist responses, would be classed with the D1-like dopamine receptor group. This receptor is an attractive candidate for initiating biochemical cascades underlying olfactory learning.
Drosophila melanogaster (taxid: 7227)

>sp|Q18775|DOPR4_CAEEL Dopamine receptor 4 OS=Caenorhabditis elegans GN=dop-4 PE=2 SV=2

 Score =  249 bits (637), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 233/461 (50%), Gaps = 84/461 (18%)

Query: 23  YIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYL 82
           YI +   V T +  + +  E    +  +  LL   L    L+TV GN LV+IAV  ++YL
Sbjct: 14  YITMTPSVSTENDTTVWATEEPAAIVWRHPLLAIALFSICLLTVAGNCLVVIAVCTKKYL 73

Query: 83  HTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILN 142
              T Y I+SLA+AD +VG++VMP ++L+E+ +H W+FGL  CD + ++D+L STASI N
Sbjct: 74  RNPTGYLIISLAIADLIVGVIVMPMNSLFEIANHTWLFGLMMCDVFHAMDILASTASIWN 133

Query: 143 LCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVP-K 201
           LCVISLDRY A  DP+ Y  ++S RR  + I  VW+ S  +SFP I+WWR         +
Sbjct: 134 LCVISLDRYMAGQDPIGYRDKVSKRRILMAILSVWVLSAILSFPGIIWWRTSSPHLYEDQ 193

Query: 202 NKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGE 261
           ++C FTDSK Y+ FSS +SFY+PL +++F Y K+Y  A   +K +++G K V     +G+
Sbjct: 194 SQCLFTDSKMYVSFSSLVSFYIPLFLILFAYGKVYIIATRHSKGMRMGIKTVSIKKRNGK 253

Query: 262 K-------------ELTLRIHRG-----GTDHRHMTLHHTPSDDVEMDNVMS-------- 295
           K             E TLRIH G      +  R+   H   S  + +  V          
Sbjct: 254 KSNTETESILSSENEPTLRIHFGRGKQSSSSLRNSRFHARESTRLLLKQVSCKSLNDRGE 313

Query: 296 -GHNGITRQ--VSNTRIIHKGHIV----KNF----------------------------- 319
             +N   RQ  +  T   H   I     +NF                             
Sbjct: 314 HNNNNTVRQPLLRGTEGCHSDSISRSSQRNFRGRNVTIGSNCSSTLLQVDQPDRMSLSSN 373

Query: 320 ---------SLSRKLSKFAKEKK---------AAKTLGIVMGVFIVCWLPFFVVNLLSAV 361
                    S  RKL+   K ++         AA+TL IV+G FI+CW PFFV   L+A 
Sbjct: 374 SQMVMTSPLSTRRKLNVREKSRQMMRYVHEQRAARTLSIVVGAFILCWTPFFVFTPLTAF 433

Query: 362 CTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           C  CF    ++E I   VTW G +NS +NP+IY+ +SRDFR
Sbjct: 434 CESCF---SNKETIFTFVTWAGHLNSMLNPLIYSRFSRDFR 471

Receptor for dopamine. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. In terms of antagonist responses, would be classed with the D1-like dopamine receptor group.

Caenorhabditis elegans (taxid: 6239)

>sp|Q93126|GPR9_BALAM Probable G-protein coupled receptor No9 OS=Balanus amphitrite PE=3 SV=1

 Score =  239 bits (610), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 153/415 (36%), Positives = 215/415 (51%), Gaps = 69/415 (16%)

Query: 48  AQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF 107
           A  R + +  L+  +L+ V GN LV++AV     L T TN FI+SLA AD LVG++V+PF
Sbjct: 30  ADHRLISLLALAFLNLMVVAGNLLVVMAVFVHSKLRTVTNLFIVSLACADLLVGMLVLPF 89

Query: 108 SALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTR 167
           SA  E+LD  W++G  WC  W ++DV   T+SILNLC ISLDRY A++ P++YPS MSTR
Sbjct: 90  SATLEVLDV-WLYGDVWCSVWLAVDVWMCTSSILNLCAISLDRYLAVSQPISYPSLMSTR 148

Query: 168 RAYIWIAIVWICSGGISFPAILWWR-------AVRNEEVPKNKCPFTDSKGYLIFSSTIS 220
           RA   IA VW+ S  I FP ++ W          R     +  C  T+ +GY+I+S+  S
Sbjct: 149 RAKQLIAAVWVLSFVICFPPLVGWNDRPGTLIGSRGSSACRLTCELTNERGYVIYSALGS 208

Query: 221 FYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHR---- 276
           F+LP  VM+F Y +IYR AV  T+++  G +         E  LTLRIHRG +  +    
Sbjct: 209 FFLPSTVMLFFYGRIYRTAVSTTRAIAQGFRTTKEDE---EGRLTLRIHRGRSVTQRAEQ 265

Query: 277 ------------HMTL-------HHTPS------------DDVEMDNVMSGHNGITRQVS 305
                        +TL        + PS            +  E+  V+ G +   R+V 
Sbjct: 266 AAAGGARAHGQVRLTLSEPGARRQNKPSFVVHCREDSRAKNQYEIYTVVEGDSRPGRRVP 325

Query: 306 NTRIIHKG------------------HIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIV 347
             +   K                     V   ++  +  +F  E KAAKT+GI++G+FI+
Sbjct: 326 QPQRPAKKLSSASQSSEDDSRPPRFISRVSRRNVRHQARRFRMETKAAKTVGIIVGLFIL 385

Query: 348 CWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           CWLPFFV  L+   C  C        L+ +V  WLG+ NS +NP +YA  SRDFR
Sbjct: 386 CWLPFFVCYLVRGFCADCV-----PPLLFSVFFWLGYCNSAVNPCVYALCSRDFR 435

Orphan G-protein coupled receptor.

Balanus amphitrite (taxid: 32267)

>sp|P25100|ADA1D_HUMAN Alpha-1D adrenergic receptor OS=Homo sapiens GN=ADRA1D PE=2 SV=2

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 43/348 (12%)

Query: 58  LSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHN 117
           L+ F L+ V GN LV+++V   R+L T TNYFI++LA+AD L+   V+PFSA  E+L   
Sbjct: 103 LAAFILMAVAGNLLVILSVACNRHLQTVTNYFIVNLAVADLLLSATVLPFSATMEVLGF- 161

Query: 118 WIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVW 177
           W FG  +CD W ++DVL  TASIL+LC IS+DRY  +   L YP+ M+ R+A   +A++W
Sbjct: 162 WAFGRAFCDVWAAVDVLCCTASILSLCTISVDRYVGVRHSLKYPAIMTERKAAAILALLW 221

Query: 178 ICSGGISFPAILWWRAVRNEEVPKNK--CPFTDSKGYLIFSSTISFYLPLLVMVFTYFKI 235
           + +  +S   +L W+    E VP ++  C  T+  GY +FSS  SFYLP+ V+V  Y ++
Sbjct: 222 VVALVVSVGPLLGWK----EPVPPDERFCGITEEAGYAVFSSVCSFYLPMAVIVVMYCRV 277

Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIH-RGGTDHRHMTLHHTPSDDVEMDNVM 294
           Y  A   T+SL+ G K+    ++    E+ LRIH RG           T +D        
Sbjct: 278 YVVARSTTRSLEAGVKRERGKAS----EVVLRIHCRGAA---------TGAD-------- 316

Query: 295 SGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFV 354
            G +G+           KGH  ++ SLS +L KF++EKKAAKTL IV+GVF++CW PFF 
Sbjct: 317 -GAHGMRSA--------KGHTFRS-SLSVRLLKFSREKKAAKTLAIVVGVFVLCWFPFFF 366

Query: 355 VNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           V  L ++    F   +  E +  V+ WLG+ NS +NP+IY C SR+F+
Sbjct: 367 VLPLGSL----FPQLKPSEGVFKVIFWLGYFNSCVNPLIYPCSSREFK 410

This alpha-adrenergic receptor mediates its effect through the influx of extracellular calcium.

Homo sapiens (taxid: 9606)

>sp|Q91175|ADA1A_ORYLA Alpha-1A adrenergic receptor OS=Oryzias latipes GN=adra1a PE=3 SV=1

 Score =  232 bits (591), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 210/347 (60%), Gaps = 49/347 (14%)

Query: 58  LSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHN 117
           L +F L  V GN LV+++VV  R+L T T YFI++LA+AD L+   V+PFSA++E+LD  
Sbjct: 33  LGIFILFGVIGNILVILSVVCHRHLQTVTYYFIVNLAVADLLLSSTVLPFSAIFEILD-R 91

Query: 118 WIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVW 177
           W+FG  +C+ W ++DVL  TASI++LCVIS+DRY  ++ PL YP+ M+ RRA + + ++W
Sbjct: 92  WVFGRVFCNIWAAVDVLCCTASIMSLCVISVDRYIGVSYPLRYPAIMTKRRALLAVMLLW 151

Query: 178 ICSGGISFPAILWWRAVRNEEVPKNK--CPFTDSKGYLIFSSTISFYLPLLVMVFTYFKI 235
           + S  IS   +  W+    E  P+++  C  T+  GY IFS+  SFYLPL +++  Y ++
Sbjct: 152 VLSVIISIGPLFGWK----EPAPEDETVCKITEEPGYAIFSAVGSFYLPLAIILAMYCRV 207

Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMS 295
           Y  A  +++ LK G K   S S    +++ LR+HRG T         T S+D  + +   
Sbjct: 208 YVVAQKESRGLKEGQKIEKSDS----EQVILRMHRGNT---------TVSEDEALRS--- 251

Query: 296 GHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVV 355
                           + H    F+L  +L KF++EKKAAKTLGIV+G F++CWLPFF+V
Sbjct: 252 ----------------RTH----FAL--RLLKFSREKKAAKTLGIVVGCFVLCWLPFFLV 289

Query: 356 NLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
             + ++    F + +  + +  +  WLG+ NS +NP+IY C +++F+
Sbjct: 290 LPIGSI----FPAYRPSDTVFKITFWLGYFNSCINPIIYLCSNQEFK 332

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Oryzias latipes (taxid: 8090)

>sp|P97717|ADA1B_MOUSE Alpha-1B adrenergic receptor OS=Mus musculus GN=Adra1b PE=1 SV=2

 Score =  231 bits (588), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 214/368 (58%), Gaps = 47/368 (12%)

Query: 37  SNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALA 96
           SN TL    +L   R + V  L  F L  + GN LV+++V   R+L T TNYFI++LA+A
Sbjct: 33  SNSTLP---QLDVTRAISVGCLGAFILFAIVGNILVILSVACNRHLRTPTNYFIVNLAIA 89

Query: 97  DCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITD 156
           D L+    +PFSA  E+L + W+ G  +CD W ++DVL  TASIL+LC IS+DRY  +  
Sbjct: 90  DLLLSFTDLPFSATLEVLGY-WVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRY 148

Query: 157 PLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKN--KCPFTDSKGYLI 214
            L YP+ ++ R+A + +  VW+ S  IS   +L W+    E  P +  +C  T+   Y +
Sbjct: 149 SLQYPTLVTRRKAILALLSVWVLSTVISIGPLLGWK----EPAPNDDKECGVTEEPFYAL 204

Query: 215 FSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTD 274
           FSS  SFY+PL V++  Y ++Y  A   TK+L+ G  + MS S    KELTLRIH     
Sbjct: 205 FSSLGSFYIPLAVILVMYCRVYIVAKRTTKNLEAGVMKEMSNS----KELTLRIH----- 255

Query: 275 HRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKA 334
                     S +   D            +S+T+   KGH  ++ S++ KL KF++EKKA
Sbjct: 256 ----------SKNFHEDT-----------LSSTK--AKGHNPRS-SIAVKLFKFSREKKA 291

Query: 335 AKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIY 394
           AKTLGIV+G+FI+CWLPFF+   L ++    F + +  + +  VV WLG+ NS +NP+IY
Sbjct: 292 AKTLGIVVGMFILCWLPFFIALPLGSL----FSTLKPPDAVFKVVFWLGYFNSCLNPIIY 347

Query: 395 ACWSRDFR 402
            C S++F+
Sbjct: 348 PCSSKEFK 355

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|P15823|ADA1B_RAT Alpha-1B adrenergic receptor OS=Rattus norvegicus GN=Adra1b PE=2 SV=2

 Score =  231 bits (588), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 222/390 (56%), Gaps = 48/390 (12%)

Query: 16  SNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVS-TLSLFSLVTVFGNALVMI 74
           S  ++W  +  D+        SN TL    +L   R + V   L  F L  + GN LV++
Sbjct: 12  SAPAHWGELKDDNFTGPNQTSSNSTLP---QLDVTRAISVGLVLGAFILFAIVGNILVIL 68

Query: 75  AVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVL 134
           +V   R+L T TNYFI++LA+AD L+   V+PFSA  E+L + W+ G  +CD W ++DVL
Sbjct: 69  SVACNRHLRTPTNYFIVNLAIADLLLSFTVLPFSATLEVLGY-WVLGRIFCDIWAAVDVL 127

Query: 135 FSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAV 194
             TASIL+LC IS+DRY  +   L YP+ ++ R+A + +  VW+ S  IS   +L W+  
Sbjct: 128 CCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLSVWVLSTVISIGPLLGWK-- 185

Query: 195 RNEEVPKN--KCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQ 252
             E  P +  +C  T+   Y +FSS  SFY+PL V++  Y ++Y  A   TK+L+ G  +
Sbjct: 186 --EPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIVAKRTTKNLEAGVMK 243

Query: 253 VMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHK 312
            MS S    KELTLRIH               S +   D            +S+T+   K
Sbjct: 244 EMSNS----KELTLRIH---------------SKNFHEDT-----------LSSTK--AK 271

Query: 313 GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDE 372
           GH  ++ S++ KL KF++EKKAAKTLGIV+G+FI+CWLPFF+   L ++    F + +  
Sbjct: 272 GHNPRS-SIAVKLFKFSREKKAAKTLGIVVGMFILCWLPFFIALPLGSL----FSTLKPP 326

Query: 373 ELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           + +  VV WLG+ NS +NP+IY C S++F+
Sbjct: 327 DAVFKVVFWLGYFNSCLNPIIYPCSSKEFK 356

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Rattus norvegicus (taxid: 10116)

>sp|P35368|ADA1B_HUMAN Alpha-1B adrenergic receptor OS=Homo sapiens GN=ADRA1B PE=1 SV=3

 Score =  229 bits (583), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 140/347 (40%), Positives = 206/347 (59%), Gaps = 44/347 (12%)

Query: 58  LSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHN 117
           L  F L  + GN LV+++V   R+L T TNYFI++LA+AD L+   V+PFSA  E+L + 
Sbjct: 52  LGAFILFAIVGNILVILSVACNRHLRTPTNYFIVNLAMADLLLSFTVLPFSAALEVLGY- 110

Query: 118 WIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVW 177
           W+ G  +CD W ++DVL  TASIL+LC IS+DRY  +   L YP+ ++ R+A + +  VW
Sbjct: 111 WVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLSVW 170

Query: 178 ICSGGISFPAILWWRAVRNEEVPKN--KCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKI 235
           + S  IS   +L W+    E  P +  +C  T+   Y +FSS  SFY+PL V++  Y ++
Sbjct: 171 VLSTVISIGPLLGWK----EPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRV 226

Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMS 295
           Y  A   TK+L+ G  + MS S    KELTLRIH               S +   D    
Sbjct: 227 YIVAKRTTKNLEAGVMKEMSNS----KELTLRIH---------------SKNFHEDT--- 264

Query: 296 GHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVV 355
                   +S+T+   KGH  ++ S++ KL KF++EKKAAKTLGIV+G+FI+CWLPFF+ 
Sbjct: 265 --------LSSTK--AKGHNPRS-SIAVKLFKFSREKKAAKTLGIVVGMFILCWLPFFIA 313

Query: 356 NLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
             L ++    F + +  + +  VV WLG+ NS +NP+IY C S++F+
Sbjct: 314 LPLGSL----FSTLKPPDAVFKVVFWLGYFNSCLNPIIYPCSSKEFK 356

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Homo sapiens (taxid: 9606)

>sp|P18841|ADA1B_MESAU Alpha-1B adrenergic receptor OS=Mesocricetus auratus GN=ADRA1B PE=1 SV=1

 Score =  228 bits (582), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 140/347 (40%), Positives = 206/347 (59%), Gaps = 44/347 (12%)

Query: 58  LSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHN 117
           L  F L  + GN LV+++V   R+L T TNYFI++LA+AD L+   V+PFSA  E+L + 
Sbjct: 52  LGAFILFAIVGNILVILSVACNRHLRTPTNYFIVNLAIADLLLSFTVLPFSATLEVLGY- 110

Query: 118 WIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVW 177
           W+ G  +CD W ++DVL  TASIL+LC IS+DRY  +   L YP+ ++ R+A + +  VW
Sbjct: 111 WVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLSVW 170

Query: 178 ICSGGISFPAILWWRAVRNEEVPKN--KCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKI 235
           + S  IS   +L W+    E  P +  +C  T+   Y +FSS  SFY+PL V++  Y ++
Sbjct: 171 VLSTVISIGPLLGWK----EPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRV 226

Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMS 295
           Y  A   TK+L+ G  + MS S    KELTLRIH               S +   D    
Sbjct: 227 YIVAKRTTKNLEAGVMKEMSNS----KELTLRIH---------------SKNFHEDT--- 264

Query: 296 GHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVV 355
                   +S+T+   KGH  ++ S++ KL KF++EKKAAKTLGIV+G+FI+CWLPFF+ 
Sbjct: 265 --------LSSTK--AKGHNPRS-SIAVKLFKFSREKKAAKTLGIVVGMFILCWLPFFIA 313

Query: 356 NLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
             L ++    F + +  + +  VV WLG+ NS +NP+IY C S++F+
Sbjct: 314 LPLGSL----FSTLKPPDAVFKVVFWLGYFNSCLNPIIYPCSSKEFK 356

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mesocricetus auratus (taxid: 10036)

>sp|Q64264|5HT1A_MOUSE 5-hydroxytryptamine receptor 1A OS=Mus musculus GN=Htr1a PE=2 SV=2

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/388 (35%), Positives = 211/388 (54%), Gaps = 36/388 (9%)

Query: 54  LVSTLSLFSLV--TVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALY 111
           ++++L L +L+   V GNA V+ A+  ER L    NY I SLA+ D +V ++V+P +ALY
Sbjct: 37  VITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALY 96

Query: 112 ELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYI 171
           ++L+  W  G   CD + +LDVL  T+SIL+LC I+LDRYWAITDP+ Y ++ + RRA  
Sbjct: 97  QVLNK-WTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA 155

Query: 172 WIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFT 231
            I++ W+    IS P +L WR   +   P N+C  +   GY I+S+  +FY+PLL+M+  
Sbjct: 156 LISLTWLIGFLISIPPMLGWRTPEDRSNP-NECTISKDHGYTIYSTFGAFYIPLLLMLVL 214

Query: 232 YFKIYRAAVVQTKSL-----KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSD 286
           Y +I+RAA  + +       K G       S++   + +L    G  D R    +     
Sbjct: 215 YGRIFRAARFRIRKTVKKVEKKGAGTSFGTSSAPPPKKSLNGQPGSGDCRRSAENRAVGT 274

Query: 287 DVEMDNVMSGHNGITRQVSNTRII--HKGHIV--------------------KNFSLSRK 324
                 V  G +  T +V     +   KGH+                     +     RK
Sbjct: 275 PCANGAVRQGEDDATLEVIEVHRVGNSKGHLPLPSESGATSYVPACLERKNERTAEAKRK 334

Query: 325 LSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGW 384
           ++  A+E+K  KTLGI+MG FI+CWLPFF+V L+   C     S    EL+ A++ WLG+
Sbjct: 335 MA-LARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCES---SCHMPELLGAIINWLGY 390

Query: 385 INSGMNPVIYACWSRDFRSK-EKILNHK 411
            NS +NPVIYA +++DF++  +KI+  K
Sbjct: 391 SNSLLNPVIYAYFNKDFQNAFKKIIKCK 418

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	662
322779267	403	hypothetical protein SINV_02870 [Solenop	0.542	0.890	0.703	1e-137
383858579	457	PREDICTED: dopamine receptor 2-like [Meg	0.543	0.787	0.712	1e-137
332023049	402	Dopamine receptor 2 [Acromyrmex echinati	0.561	0.925	0.684	1e-137
307206398	404	Dopamine receptor 2 [Harpegnathos saltat	0.543	0.891	0.699	1e-136
56044552	475	dopamine receptor [Papilio xuthus]	0.557	0.776	0.678	1e-135
307181883	404	Dopamine receptor 2 [Camponotus floridan	0.558	0.915	0.673	1e-135
340725553	457	PREDICTED: dopamine receptor 2-like [Bom	0.543	0.787	0.701	1e-134
350415259	469	PREDICTED: dopamine receptor 2-like [Bom	0.543	0.767	0.698	1e-134
380024653	460	PREDICTED: dopamine receptor 2-like [Api	0.528	0.760	0.713	1e-134
58585084	456	dopamine receptor 2 [Apis mellifera] gi|	0.530	0.769	0.707	1e-134

>gi|322779267|gb|EFZ09569.1| hypothetical protein SINV_02870 [Solenopsis invicta]

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/374 (70%), Positives = 304/374 (81%), Gaps = 15/374 (4%)

Query: 38  NFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALAD 97
           N T +   ELA  R  L   L LF + TVFGN+LV++AV RER+LHT+TNYF+ SLA AD
Sbjct: 35  NHTYDDLWELATDRIGLAIVLLLFCVATVFGNSLVILAVFRERHLHTATNYFVTSLACAD 94

Query: 98  CLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDP 157
           CLVGLVVMP SA+YE+L++ W+F  +WCD WRSLDVLFSTASILNLCVISLDRYWAITDP
Sbjct: 95  CLVGLVVMPISAVYEVLENRWLFTTDWCDVWRSLDVLFSTASILNLCVISLDRYWAITDP 154

Query: 158 LTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSS 217
            TYP+RMS +RA I IAIVWICS  ISFPAI WWRAVR E+VPK+KCPFT++ GYLIFSS
Sbjct: 155 FTYPTRMSRKRAAILIAIVWICSSAISFPAIAWWRAVRTEQVPKDKCPFTENLGYLIFSS 214

Query: 218 TISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGG----- 272
           TISFYLPL VMVFTY++IYRAAV+QT+SLK+GTKQVM    SGE ELTLRIHRGG     
Sbjct: 215 TISFYLPLFVMVFTYYRIYRAAVIQTRSLKLGTKQVMMA--SGELELTLRIHRGGVSTTN 272

Query: 273 TDHRHM--TLHHTPSDDVEMDNVMSG--HNGITRQVSNTRIIHKGHIVKNFSLSRKLSKF 328
           TD RH+  T   TP D  +++  ++   +NG+TR V +TRI +K H+ KNFSLSRKL+KF
Sbjct: 273 TDARHLFRTASSTPEDLQDLEEPLTAFHNNGLTR-VPSTRINNKQHLGKNFSLSRKLAKF 331

Query: 329 AKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSG 388
           AKEKKAAKTLGIVMGVFI+CWLPFFVVNLLS  CT+C W    EE++SA VTWLGWINSG
Sbjct: 332 AKEKKAAKTLGIVMGVFIICWLPFFVVNLLSGFCTRCIW---QEEMVSAAVTWLGWINSG 388

Query: 389 MNPVIYACWSRDFR 402
           MNPVIYACWSRDFR
Sbjct: 389 MNPVIYACWSRDFR 402

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858579|ref|XP_003704778.1| PREDICTED: dopamine receptor 2-like [Megachile rotundata]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/372 (71%), Positives = 299/372 (80%), Gaps = 12/372 (3%)

Query: 37  SNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALA 96
            N T E    LA  R  L   L LFS+ TVFGN LV++AVVRERYLHT+TNYF+ SLA A
Sbjct: 34  QNRTYEDLWHLATDRAGLAILLFLFSVATVFGNMLVILAVVRERYLHTATNYFVTSLAFA 93

Query: 97  DCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITD 156
           DCLVGLVVMPFSA+YE+L++ W+F  +WCD WRSLDVLFSTASILNLCVISLDRYWAITD
Sbjct: 94  DCLVGLVVMPFSAIYEVLENRWLFTTDWCDVWRSLDVLFSTASILNLCVISLDRYWAITD 153

Query: 157 PLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFS 216
           P TYPSRMS RRA I IAIVWICS  ISFPAI WWRAVR EEVP++KCPFT+  GYLIFS
Sbjct: 154 PFTYPSRMSRRRAAILIAIVWICSSAISFPAIAWWRAVRTEEVPEDKCPFTEHLGYLIFS 213

Query: 217 STISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGG---T 273
           STISFYLPL VMVFTY+KIYRAAV+QTKSLK+GTKQV+    SGE ELTLRIHRGG   T
Sbjct: 214 STISFYLPLFVMVFTYYKIYRAAVIQTKSLKLGTKQVIMA--SGELELTLRIHRGGGTNT 271

Query: 274 DHRHM--TLHHTPSDDVEMDNVMSG-HNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAK 330
           D RH+  T   TP D  +++  ++  HN    +V +TR I+K H+ KNFSLSRKL+KFAK
Sbjct: 272 DARHLFRTASSTPEDLQDLEEPLTAMHNNCLTRVPSTR-INKQHLGKNFSLSRKLAKFAK 330

Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN 390
           EKKAAKTLGIVMGVFI+CWLPFFVVNL S  C++C W    EE++ A VTWLGWINSGMN
Sbjct: 331 EKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCSQCIW---QEEIVFAAVTWLGWINSGMN 387

Query: 391 PVIYACWSRDFR 402
           PVIYACWSRDFR
Sbjct: 388 PVIYACWSRDFR 399

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023049|gb|EGI63314.1| Dopamine receptor 2 [Acromyrmex echinatior]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/387 (68%), Positives = 308/387 (79%), Gaps = 15/387 (3%)

Query: 25  DIDDDVVTYDFVS-NFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLH 83
           D+D      ++ S N T E   ELA  R  L   L LFS+ TVFGN+LV++AV RER+LH
Sbjct: 21  DLDRSFYNANYPSFNHTYEDLWELATDRIGLAIVLLLFSVATVFGNSLVILAVFRERHLH 80

Query: 84  TSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNL 143
           T+TNYF+ SLA ADCLVGLVVMP SA+YE+L++ W+F  +WCD WRSLDVLFSTASILNL
Sbjct: 81  TATNYFVTSLACADCLVGLVVMPISAVYEVLENRWLFTTDWCDVWRSLDVLFSTASILNL 140

Query: 144 CVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNK 203
           CVISLDRYWAITDP TYP+RMS +RA I IAIVWICS  ISFPAI WWRAVR E+VP +K
Sbjct: 141 CVISLDRYWAITDPFTYPTRMSRKRAAILIAIVWICSSAISFPAIAWWRAVRTEQVPADK 200

Query: 204 CPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKE 263
           CPFT++ GYLIFSSTISFYLPL VMVFTY++IYRAAV+QT+SLK+GTKQVM    SGE E
Sbjct: 201 CPFTENLGYLIFSSTISFYLPLFVMVFTYYRIYRAAVIQTRSLKLGTKQVMMA--SGELE 258

Query: 264 LTLRIHRGG----TDHRHM--TLHHTPSDDVEMDNVMSG--HNGITRQVSNTRIIHKGHI 315
           LTLRIHRGG    TD RH+  T   TP D  +++  ++   +NG+TR V + RI +K H+
Sbjct: 259 LTLRIHRGGTTTNTDARHLFRTASSTPEDLQDLEEPLTALHNNGLTR-VPSARISNKQHL 317

Query: 316 VKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELI 375
            KNFSLSRKL+KFAKEKKAAKTLGIVMGVFI+CWLPFFVVNL S  CT+C W    EE++
Sbjct: 318 GKNFSLSRKLAKFAKEKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCTRCIW---QEEIV 374

Query: 376 SAVVTWLGWINSGMNPVIYACWSRDFR 402
           SA VTWLGWINSGMNPVIYACWSRDFR
Sbjct: 375 SAAVTWLGWINSGMNPVIYACWSRDFR 401

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206398|gb|EFN84440.1| Dopamine receptor 2 [Harpegnathos saltator]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/373 (69%), Positives = 301/373 (80%), Gaps = 13/373 (3%)

Query: 38  NFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALAD 97
           N + E   ELA  R  L   L LFS+ TVFGN LV++AV RERYLHT+TNYF+ SLA AD
Sbjct: 36  NSSYENLWELATDRAGLAIVLLLFSVATVFGNTLVILAVFRERYLHTATNYFVTSLAFAD 95

Query: 98  CLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDP 157
           CLVGLVVMPFSA+YE+L++ W+F  +WCD WRSLDVLFSTASILNLCVISLDRYWAITDP
Sbjct: 96  CLVGLVVMPFSAVYEVLENRWLFTTDWCDVWRSLDVLFSTASILNLCVISLDRYWAITDP 155

Query: 158 LTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSS 217
            TYP+RMS +RA I IAIVWICS  ISFPAI WWRAVR E+VP++KCPFT++ GYLIFSS
Sbjct: 156 FTYPTRMSRKRAAILIAIVWICSSAISFPAIAWWRAVRTEQVPEDKCPFTENLGYLIFSS 215

Query: 218 TISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGG---TD 274
           TISFYLPL VMVFTY++IYRAAV+QT+SLK+GTKQVM    SGE ELTLRIHRGG   TD
Sbjct: 216 TISFYLPLFVMVFTYYRIYRAAVIQTRSLKLGTKQVMMA--SGELELTLRIHRGGGTNTD 273

Query: 275 HRHM--TLHHTPSDDVEMDNVMSG--HNGITRQVSNTRII-HKGHIVKNFSLSRKLSKFA 329
            RH+  T   TP +  +++  ++   +NG+TR  S    I +K H+ KNFSLSRKL+KFA
Sbjct: 274 ARHLFRTTSSTPEELQDLEEPLTALHNNGLTRVPSARHTINNKQHLGKNFSLSRKLAKFA 333

Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
           KEKKAAKTLGIVMGVFI+CWLPFFVVNL S  CT+C W    EE++SA VTWLGWINSGM
Sbjct: 334 KEKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCTRCIW---QEEIVSAAVTWLGWINSGM 390

Query: 390 NPVIYACWSRDFR 402
           NPVIYACWSRDFR
Sbjct: 391 NPVIYACWSRDFR 403

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56044552|dbj|BAD72870.1| dopamine receptor [Papilio xuthus]

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/382 (67%), Positives = 300/382 (78%), Gaps = 13/382 (3%)

Query: 28  DDVVTYDFVSNFTLERW---LELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHT 84
           D+   Y+   N + E W   + L Q R LLV+ L LFSL TVFGN LV++AVVRERYLHT
Sbjct: 42  DNSTGYNITDN-SAELWNDYIHLLQDRALLVTFLLLFSLTTVFGNMLVIMAVVRERYLHT 100

Query: 85  STNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLC 144
           STNYF+ SLA+ADCLVGLVVMPFSALYE+L+H W FG++WCD WRSLDVLFSTASILNLC
Sbjct: 101 STNYFVTSLAVADCLVGLVVMPFSALYEVLEHTWFFGVDWCDVWRSLDVLFSTASILNLC 160

Query: 145 VISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKC 204
           VISLDRYWAITDP+TYP RMS R+A   IA VW+CSG ISFPAI WWRAVR EEVP  KC
Sbjct: 161 VISLDRYWAITDPITYPMRMSGRKAAFLIAAVWVCSGAISFPAIAWWRAVRLEEVPDYKC 220

Query: 205 PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKEL 264
           PFT++  Y+IFSSTISFYLPL VMVFTY++IYRAA +QT+SLK+GTKQVM    SGE EL
Sbjct: 221 PFTENLEYIIFSSTISFYLPLFVMVFTYYRIYRAATIQTRSLKIGTKQVM--RPSGELEL 278

Query: 265 TLRIHRGGTDHRHMTLHH---TPSDDVEMDNVMSGHNGITRQVSN-TRIIHKGHIVKNFS 320
           TLRIHRGGT  +   + H   TP +  +       +NG++R  +  T + H  H+ KNFS
Sbjct: 279 TLRIHRGGTVRQRADVCHGGCTPEEHDQEPLTALQNNGLSRSSTRLTNVTHTKHLPKNFS 338

Query: 321 LSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVT 380
           LSRKL+KFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLS +C+ C      EE+++ VVT
Sbjct: 339 LSRKLAKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSGICSSCI---THEEIVNVVVT 395

Query: 381 WLGWINSGMNPVIYACWSRDFR 402
           WLGW+NS MNPVIYACWSRDFR
Sbjct: 396 WLGWVNSSMNPVIYACWSRDFR 417

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181883|gb|EFN69323.1| Dopamine receptor 2 [Camponotus floridanus]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/392 (67%), Positives = 310/392 (79%), Gaps = 22/392 (5%)

Query: 26  IDDDVV-------TYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVR 78
           ++DD++       +Y  + N T + W  LA  R  L   L LFS+ TVFGN+LV++AV R
Sbjct: 19  LNDDLIGKSFYNTSYSPLFNQTYDLW-GLASDRIGLAIVLLLFSVATVFGNSLVILAVFR 77

Query: 79  ERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTA 138
           ER+LHT+TNYF+ SLA ADCLVGLVVMP SA+YE+L++ W+F  +WCD WRSLDVLFSTA
Sbjct: 78  ERHLHTATNYFVTSLACADCLVGLVVMPISAVYEVLENRWLFTTDWCDVWRSLDVLFSTA 137

Query: 139 SILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEE 198
           SILNLCVISLDRYWAITDP TYP RMS +RA I IAIVWICS  ISFPAI WWRAVR E+
Sbjct: 138 SILNLCVISLDRYWAITDPFTYPMRMSRKRAAILIAIVWICSSAISFPAIAWWRAVRTEQ 197

Query: 199 VPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGST 258
           VP++KCPFT++ GYLIFSSTISFYLPL VMVFTY++IYRAAV+QT+SLK+GTKQVM    
Sbjct: 198 VPEDKCPFTENLGYLIFSSTISFYLPLFVMVFTYYRIYRAAVIQTRSLKLGTKQVMMA-- 255

Query: 259 SGEKELTLRIHRGG----TDHRHM--TLHHTPSD--DVEMDNVMSGHNGITRQVSNTRII 310
           SGE ELTLR+HRGG    TD RH+  T   TP D  D+E    +  +NG+TR V + RI 
Sbjct: 256 SGELELTLRMHRGGVSTNTDARHLFRTASSTPEDLQDLEEPLTVLHNNGLTR-VPSVRIN 314

Query: 311 HKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 370
           +K H+ KNFSLSRKL+KFAKEKKAAKTLGIVMGVFI+CWLPFFVVNL S  C++C W   
Sbjct: 315 NKQHLGKNFSLSRKLAKFAKEKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCSRCIW--- 371

Query: 371 DEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
            EE++SA VTWLGWINSGMNPVIYACWSRDFR
Sbjct: 372 QEEIVSAAVTWLGWINSGMNPVIYACWSRDFR 403

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725553|ref|XP_003401133.1| PREDICTED: dopamine receptor 2-like [Bombus terrestris]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/372 (70%), Positives = 296/372 (79%), Gaps = 12/372 (3%)

Query: 37  SNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALA 96
            N T E    LA  R  L   L LFS+ TVFGN LV++AVVRERYLHT+TNYF+ SLA A
Sbjct: 34  QNRTYEDLWNLATDRAGLAILLFLFSVATVFGNTLVILAVVRERYLHTATNYFVTSLAFA 93

Query: 97  DCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITD 156
           DCLVGLVVMPFSA+YE+L++ W+F  +WCD WRSLDVLFSTASILNLCVISLDRYWAITD
Sbjct: 94  DCLVGLVVMPFSAIYEVLENRWLFTTDWCDVWRSLDVLFSTASILNLCVISLDRYWAITD 153

Query: 157 PLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFS 216
           P TYPS+MS +RA I IAIVWICS  ISFPAI WWRAVR EEVP++KCPFT+  GYLIFS
Sbjct: 154 PFTYPSKMSRKRAAILIAIVWICSSAISFPAIAWWRAVRTEEVPEDKCPFTEHLGYLIFS 213

Query: 217 STISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGG---T 273
           STISFYLPL VMVFTY+KIYRAAV QTKSLK+GTKQV+    SGE ELTLRIHRGG   T
Sbjct: 214 STISFYLPLFVMVFTYYKIYRAAVFQTKSLKLGTKQVIMA--SGELELTLRIHRGGGTNT 271

Query: 274 DHRHM--TLHHTPSDDVEMDNVMSG-HNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAK 330
           D RH+  T   TP D  +++  ++  HN    +V +TR I+K H   NFSLSRKL+KFAK
Sbjct: 272 DARHLFRTASSTPEDLQDLEEPLTTMHNNCLTRVPSTR-INKQHRGNNFSLSRKLAKFAK 330

Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN 390
           EKKAAKTLGIVMGVFI+CWLPFFVVNL S  C++C W    E+++ A VTWLGWINSGMN
Sbjct: 331 EKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCSQCIW---QEKIVFAAVTWLGWINSGMN 387

Query: 391 PVIYACWSRDFR 402
           PVIYACWSRDFR
Sbjct: 388 PVIYACWSRDFR 399

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415259|ref|XP_003490584.1| PREDICTED: dopamine receptor 2-like [Bombus impatiens]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/372 (69%), Positives = 296/372 (79%), Gaps = 12/372 (3%)

Query: 37  SNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALA 96
            N T E    LA  R  L   L LFS+ TVFGN LV++AVVRERYLHT+TNYF+ SLA A
Sbjct: 46  QNRTYEDLWNLATDRAGLAILLFLFSVATVFGNTLVILAVVRERYLHTATNYFVTSLAFA 105

Query: 97  DCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITD 156
           DCLVGLVVMPFSA+YE+L++ W+F  +WCD WRSLDVLFSTASILNLCVISLDRYWAITD
Sbjct: 106 DCLVGLVVMPFSAIYEVLENRWLFTTDWCDVWRSLDVLFSTASILNLCVISLDRYWAITD 165

Query: 157 PLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFS 216
           P TYPS+MS +RA I IAIVW+CS  ISFPAI WWRAVR EEVP++KCPFT+  GYLIFS
Sbjct: 166 PFTYPSKMSRKRAAILIAIVWVCSSAISFPAIAWWRAVRTEEVPEDKCPFTEHLGYLIFS 225

Query: 217 STISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGG---T 273
           STISFYLPL VMVFTY+KIYRAAV QTKSLK+GTKQV+    SGE ELTLRIHRGG   T
Sbjct: 226 STISFYLPLFVMVFTYYKIYRAAVFQTKSLKLGTKQVIMA--SGELELTLRIHRGGGTNT 283

Query: 274 DHRHM--TLHHTPSDDVEMDNVMSG-HNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAK 330
           D RH+  T   TP D  +++  ++  HN    +V +TR I+K H   NFSLSRKL+KFAK
Sbjct: 284 DARHLFRTASSTPEDLQDLEEPLTTMHNNCLTRVPSTR-INKQHRGNNFSLSRKLAKFAK 342

Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN 390
           EKKAAKTLGIVMGVFI+CWLPFFVVNL S  C++C W    E+++ A VTWLGWINSGMN
Sbjct: 343 EKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCSQCIW---QEKIVFAAVTWLGWINSGMN 399

Query: 391 PVIYACWSRDFR 402
           PVIYACWSRDFR
Sbjct: 400 PVIYACWSRDFR 411

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024653|ref|XP_003696107.1| PREDICTED: dopamine receptor 2-like [Apis florea]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/363 (71%), Positives = 293/363 (80%), Gaps = 13/363 (3%)

Query: 47  LAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMP 106
           LA  R  L   L LFS+ TVFGN LV++AVVRERYLHT+TNYF+ SLA ADCLVGLVVMP
Sbjct: 46  LATDRAGLAILLFLFSVATVFGNTLVILAVVRERYLHTATNYFVTSLAFADCLVGLVVMP 105

Query: 107 FSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMST 166
           FSA+YE+L++ W+F  +WCD WRSLDVLFSTASILNLCVISLDRYWAITDP TYPS+MS 
Sbjct: 106 FSAIYEVLENRWLFTTDWCDVWRSLDVLFSTASILNLCVISLDRYWAITDPFTYPSKMSR 165

Query: 167 RRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLL 226
           +RA I IAIVWICS  ISFPAI+WWRAVR EEVP++KCPFT+  GYLIFSSTISFYLPL 
Sbjct: 166 KRAAILIAIVWICSSAISFPAIVWWRAVRTEEVPEDKCPFTEHLGYLIFSSTISFYLPLF 225

Query: 227 VMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGG---TDHRHM--TLH 281
           VMVFTY+KIYRAAV+QTKSLK+GTKQV+    SGE ELTLR+HRGG   TD RH+  T  
Sbjct: 226 VMVFTYYKIYRAAVIQTKSLKLGTKQVLMA--SGELELTLRMHRGGGTNTDARHLFRTAS 283

Query: 282 HTPSD--DVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLG 339
            TP D  D+E       HN    +V +TR I+K H   NFSLSRKL+KFAKEKKAAKTLG
Sbjct: 284 STPEDLQDLEEPLTTIQHNNCLTRVPSTR-INKQHRGNNFSLSRKLAKFAKEKKAAKTLG 342

Query: 340 IVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSR 399
           IVMGVFI+CWLPFFVVNL S  C++C W    E+++ A VTWLGWINSGMNPVIYACWSR
Sbjct: 343 IVMGVFIICWLPFFVVNLWSGFCSQCIW---QEKIVFAAVTWLGWINSGMNPVIYACWSR 399

Query: 400 DFR 402
           DFR
Sbjct: 400 DFR 402

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58585084|ref|NP_001011567.1| dopamine receptor 2 [Apis mellifera] gi|20336615|gb|AAM19330.1|AF498306_1 dopamine receptor type D2 [Apis mellifera]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/363 (70%), Positives = 291/363 (80%), Gaps = 12/363 (3%)

Query: 47  LAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMP 106
           LA  R  L   L LFS+ TVFGN LV++AVVRERYLHT+TNYF+ SLA ADCLVGLVVMP
Sbjct: 41  LATDRAGLAILLFLFSVATVFGNTLVILAVVRERYLHTATNYFVTSLAFADCLVGLVVMP 100

Query: 107 FSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMST 166
           FSA+YE+L++ W+F  +WCD WRSLDVLFSTASILNLCVISLDRYWAITDP TYPS+MS 
Sbjct: 101 FSAIYEVLENRWLFTTDWCDVWRSLDVLFSTASILNLCVISLDRYWAITDPFTYPSKMSR 160

Query: 167 RRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLL 226
           RRA + IAIVWICS  ISFPAI+WWRAVR EEVP++KCPFT+  GYLIFSSTISFYLPL 
Sbjct: 161 RRAAVLIAIVWICSSAISFPAIVWWRAVRTEEVPEDKCPFTEHLGYLIFSSTISFYLPLF 220

Query: 227 VMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGG---TDHRHM--TLH 281
           VMVFTY+KIYRAAV+QTKSLK+GTKQV+    SGE ELTLRIHRGG   TD RH+  T  
Sbjct: 221 VMVFTYYKIYRAAVIQTKSLKLGTKQVLMA--SGELELTLRIHRGGGTNTDARHLFRTAS 278

Query: 282 HTPSD--DVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLG 339
            TP D  D+E       HN    ++ +TRI  +     NFSLSRKL+KFAKEKKAAKTLG
Sbjct: 279 STPEDLQDLEEPLTTIQHNNCLTRIPSTRINKQHTRGNNFSLSRKLAKFAKEKKAAKTLG 338

Query: 340 IVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSR 399
           IVMGVFI+CWLPFFVVNL S  C++C W    E+++ A VTWLGWINSGMNPVIYACWSR
Sbjct: 339 IVMGVFIICWLPFFVVNLWSGFCSQCIW---QEKIVFAAVTWLGWINSGMNPVIYACWSR 395

Query: 400 DFR 402
           DFR
Sbjct: 396 DFR 398

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	662
FB|FBgn0015129	539	DopR2 "Dopamine receptor 2" [D	0.348	0.428	0.683	1.3e-122
WB|WBGene00016872	517	dop-4 [Caenorhabditis elegans	0.299	0.382	0.467	7.7e-68
UNIPROTKB|Q18775	517	dop-4 "Dopamine receptor 4" [C	0.299	0.382	0.467	7.7e-68
UNIPROTKB|F1NIZ5	376	ADRA1B "Uncharacterized protei	0.291	0.513	0.441	8.6e-62
ZFIN|ZDB-GENE-041114-51	481	adra1bb "adrenergic receptor,	0.303	0.417	0.432	1.3e-61
UNIPROTKB|F1S8D0	571	ADRA1D "Alpha-1D adrenergic re	0.312	0.362	0.436	1.5e-60
UNIPROTKB|Q9TTM9	571	ADRA1D "Alpha-1D adrenergic re	0.312	0.362	0.436	1.5e-60
ZFIN|ZDB-GENE-090312-203	491	adra1d "adrenergic receptor, a	0.338	0.456	0.398	6.4e-60
UNIPROTKB|F1NK17	436	F1NK17 "Uncharacterized protei	0.291	0.442	0.431	1.1e-59
UNIPROTKB|F1MGA6	515	ADRA1B "Uncharacterized protei	0.291	0.374	0.441	1.2e-59

FB|FBgn0015129 DopR2 "Dopamine receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 833 (298.3 bits), Expect = 1.3e-122, Sum P(2) = 1.3e-122
 Identities = 160/234 (68%), Positives = 185/234 (79%)

Query:    41 LERWLE-LAQQRXXXXXXXXXXXXXXXXGNALVMIAVVRERYLHTSTNYFIMSLALADCL 99
             L  +LE L   R                GN+LV++AV+RERYLHT+TNYFI SLA+ADCL
Sbjct:    97 LSEFLEALPNDRVGLLAFLFLFSFATVFGNSLVILAVIRERYLHTATNYFITSLAVADCL 156

Query:   100 VGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLT 159
             VGLVVMPFSALYE+L++ W FG +WCD WRSLDVLFSTASILNLCVISLDRYWAITDP +
Sbjct:   157 VGLVVMPFSALYEVLENTWFFGTDWCDIWRSLDVLFSTASILNLCVISLDRYWAITDPFS 216

Query:   160 YPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTI 219
             YP RM+ +RA   IA VWICS  ISFPAI+WWRA R+ E+P  KC FT+  GYL+FSSTI
Sbjct:   217 YPMRMTVKRAAGLIAAVWICSSAISFPAIVWWRAARDGEMPAYKCTFTEHLGYLVFSSTI 276

Query:   220 SFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGT 273
             SFYLPLLVMVFTY +IYRAAV+QT+SLK+GTKQV+  S  GE +LTLRIHRGGT
Sbjct:   277 SFYLPLLVMVFTYCRIYRAAVIQTRSLKIGTKQVLMAS--GELQLTLRIHRGGT 328

GO:0004952 "dopamine neurotransmitter receptor activity" evidence=ISS;NAS

GO:0005887 "integral to plasma membrane" evidence=ISM;NAS

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA

GO:0001588 "dopamine neurotransmitter receptor activity, coupled via Gs" evidence=ISS;NAS;IDA

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007212 "dopamine receptor signaling pathway" evidence=ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

WB|WBGene00016872 dop-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 487 (176.5 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
 Identities = 93/199 (46%), Positives = 134/199 (67%)

Query:    68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
             GN LV+IAV  ++YL   T Y I+SLA+AD +VG++VMP ++L+E+ +H W+FGL  CD 
Sbjct:    59 GNCLVVIAVCTKKYLRNPTGYLIISLAIADLIVGVIVMPMNSLFEIANHTWLFGLMMCDV 118

Query:   128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             + ++D+L STASI NLCVISLDRY A  DP+ Y  ++S RR  + I  VW+ S  +SFP 
Sbjct:   119 FHAMDILASTASIWNLCVISLDRYMAGQDPIGYRDKVSKRRILMAILSVWVLSAILSFPG 178

Query:   188 ILWWRAVRNEEVP-KNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL 246
             I+WWR         +++C FTDSK Y+ FSS +SFY+PL +++F Y K+Y  A   +K +
Sbjct:   179 IIWWRTSSPHLYEDQSQCLFTDSKMYVSFSSLVSFYIPLFLILFAYGKVYIIATRHSKGM 238

Query:   247 KVGTKQVMSGSTSGEKELT 265
             ++G K V     +G+K  T
Sbjct:   239 RMGIKTVSIKKRNGKKSNT 257

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA

UNIPROTKB|Q18775 dop-4 "Dopamine receptor 4" [Caenorhabditis elegans (taxid:6239)]

 Score = 487 (176.5 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
 Identities = 93/199 (46%), Positives = 134/199 (67%)

Query:    68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
             GN LV+IAV  ++YL   T Y I+SLA+AD +VG++VMP ++L+E+ +H W+FGL  CD 
Sbjct:    59 GNCLVVIAVCTKKYLRNPTGYLIISLAIADLIVGVIVMPMNSLFEIANHTWLFGLMMCDV 118

Query:   128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             + ++D+L STASI NLCVISLDRY A  DP+ Y  ++S RR  + I  VW+ S  +SFP 
Sbjct:   119 FHAMDILASTASIWNLCVISLDRYMAGQDPIGYRDKVSKRRILMAILSVWVLSAILSFPG 178

Query:   188 ILWWRAVRNEEVP-KNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL 246
             I+WWR         +++C FTDSK Y+ FSS +SFY+PL +++F Y K+Y  A   +K +
Sbjct:   179 IIWWRTSSPHLYEDQSQCLFTDSKMYVSFSSLVSFYIPLFLILFAYGKVYIIATRHSKGM 238

Query:   247 KVGTKQVMSGSTSGEKELT 265
             ++G K V     +G+K  T
Sbjct:   239 RMGIKTVSIKKRNGKKSNT 257

GO:0030285 "integral to synaptic vesicle membrane" evidence=IC

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

UNIPROTKB|F1NIZ5 ADRA1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 8.6e-62, Sum P(2) = 8.6e-62
 Identities = 90/204 (44%), Positives = 129/204 (63%)

Query:    68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
             GN LV+++V   R+L   TNYFI++LA+AD L+   V+PFSA  E+L + W+ G  +CD 
Sbjct:    66 GNILVILSVACNRHLRIPTNYFIINLAIADLLLSFTVLPFSATLEILGY-WVLGRIFCDI 124

Query:   128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             W ++DVL  TASIL+LC IS+DRY  +   L YP+ ++ RRA + +  VW+ S  IS   
Sbjct:   125 WAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRRAILALLGVWVLSMVISIGP 184

Query:   188 ILWWRAVRNEEVPKN--KCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS 245
             +L W+    E  PK+  +C  T+   Y +FSS  SFY+PL+V++  Y ++Y  A   TK+
Sbjct:   185 LLGWK----EPAPKDDKECRITEEPFYALFSSLGSFYIPLIVILVMYCRVYIVAKRTTKN 240

Query:   246 LKVGTKQVMSGSTSGEKELTLRIH 269
             L+ G  + MS S    KELTLRIH
Sbjct:   241 LEAGVMKEMSNS----KELTLRIH 260

GO:0005886 "plasma membrane" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0001975 "response to amphetamine" evidence=IEA

GO:0001987 "vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0045818 "negative regulation of glycogen catabolic process" evidence=IEA

GO:0045819 "positive regulation of glycogen catabolic process" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

ZFIN|ZDB-GENE-041114-51 adra1bb "adrenergic receptor, alpha 1bb" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 90/208 (43%), Positives = 132/208 (63%)

Query:    68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
             GN LV+++VV  R+L + TNYFI++LA+AD L+G  V+P SA  E++ H W+FG  +CD 
Sbjct:    64 GNILVILSVVCNRHLRSPTNYFIVNLAIADLLLGTTVLPVSATLEVVGH-WVFGRIFCDV 122

Query:   128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             W ++DVL  TASI++LCVIS+DRY  ++ PL YP+ ++ RRA + +  VW+ S  IS   
Sbjct:   123 WAAVDVLCCTASIMSLCVISIDRYIGVSHPLQYPNIVTGRRALLAMLGVWVLSLVISIGP 182

Query:   188 ILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLK 247
             +L W+   + +     C   +   Y +FSS  SFY+PL+V++  Y ++Y  A   TK+L+
Sbjct:   183 LLGWKEPPSPD--DTVCAINEEPFYALFSSLGSFYIPLIVILVMYCRVYVVAKRTTKNLE 240

Query:   248 VGTKQVMSGSTSGEKELTLRIHRGGTDH 275
              G K       SGE  +TLRIHRG   H
Sbjct:   241 AGVKT--ESMNSGE--ITLRIHRGSQVH 264

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1S8D0 ADRA1D "Alpha-1D adrenergic receptor" [Sus scrofa (taxid:9823)]

 Score = 421 (153.3 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
 Identities = 97/222 (43%), Positives = 135/222 (60%)

Query:    68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
             GN LV+++V   R+L T TNYFI++LA+AD L+   V+PFSA  E+L   W FG  +CD 
Sbjct:   112 GNLLVILSVACNRHLQTVTNYFIVNLAVADLLLSATVLPFSATMEVLGF-WAFGRAFCDV 170

Query:   128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             W ++DVL  TASIL+LC IS+DRY  +   L YPS M+ R+A   +A++W  +  +S   
Sbjct:   171 WAAVDVLCCTASILSLCTISVDRYVGVRHSLKYPSIMTERKAAAILALLWAVAIVVSVGP 230

Query:   188 ILWWRAVRNEEVPKNK--CPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS 245
             +L W+    E VP ++  C  T+  GY +FSS  SFYLP+ V+V  Y ++Y  A   T+S
Sbjct:   231 LLGWK----EPVPPDERFCGITEEAGYAVFSSLCSFYLPMAVIVVMYCRVYVVARSTTRS 286

Query:   246 LKVGTKQVMSGSTSGEKELTLRIH-RG---GTDHRHMTLHHT 283
             L+ G K+   G  S   E+ LRIH RG   GTD  H  +  T
Sbjct:   287 LEAGVKRER-GKAS---EVVLRIHCRGSSTGTDRGHGAMRST 324

GO:0005886 "plasma membrane" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0001994 "norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure" evidence=IEA

GO:0001986 "negative regulation of the force of heart contraction involved in baroreceptor response to increased systemic arterial blood pressure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9TTM9 ADRA1D "Alpha-1D adrenergic receptor" [Sus scrofa (taxid:9823)]

 Score = 421 (153.3 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
 Identities = 97/222 (43%), Positives = 135/222 (60%)

Query:    68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
             GN LV+++V   R+L T TNYFI++LA+AD L+   V+PFSA  E+L   W FG  +CD 
Sbjct:   112 GNLLVILSVACNRHLQTVTNYFIVNLAVADLLLSATVLPFSATMEVLGF-WAFGRAFCDV 170

Query:   128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             W ++DVL  TASIL+LC IS+DRY  +   L YPS M+ R+A   +A++W  +  +S   
Sbjct:   171 WAAVDVLCCTASILSLCTISVDRYVGVRHSLKYPSIMTERKAAAILALLWAVAIVVSVGP 230

Query:   188 ILWWRAVRNEEVPKNK--CPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS 245
             +L W+    E VP ++  C  T+  GY +FSS  SFYLP+ V+V  Y ++Y  A   T+S
Sbjct:   231 LLGWK----EPVPPDERFCGITEEAGYAVFSSLCSFYLPMAVIVVMYCRVYVVARSTTRS 286

Query:   246 LKVGTKQVMSGSTSGEKELTLRIH-RG---GTDHRHMTLHHT 283
             L+ G K+   G  S   E+ LRIH RG   GTD  H  +  T
Sbjct:   287 LEAGVKRER-GKAS---EVVLRIHCRGSSTGTDRGHGAMRST 324

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

ZFIN|ZDB-GENE-090312-203 adra1d "adrenergic receptor, alpha 1d" [Danio rerio (taxid:7955)]

 Score = 414 (150.8 bits), Expect = 6.4e-60, Sum P(2) = 6.4e-60
 Identities = 94/236 (39%), Positives = 140/236 (59%)

Query:    36 VSNFTLERWLELAQQRXXXXXXXXXXXXXXXXGNALVMIAVVRERYLHTSTNYFIMSLAL 95
             +SN T E  + L  Q                 GN LV+++V+  ++L T TN+FI++LA+
Sbjct:    22 ISNTTCEG-ITLDSQVIGVGIFLAIFISVAIVGNILVILSVLCNKHLQTVTNFFIVNLAI 80

Query:    96 ADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAIT 155
             AD L+ ++V+PFSA  E+L   W+FG  +C+ W ++DVL  TASIL+LCVIS+DRY  + 
Sbjct:    81 ADLLLSIIVLPFSASLEVLGC-WVFGRVFCNIWAAVDVLCCTASILSLCVISIDRYIGVK 139

Query:   156 DPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNK--CPFTDSKGYL 213
               L YP+ M+ R+A + + +VW+ S  IS   +L W+    E  P ++  C  T+  GY 
Sbjct:   140 HCLKYPTIMTERKAGVILVLVWVSSMVISIGPLLGWK----EPPPSDESICRITEEPGYA 195

Query:   214 IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIH 269
             +FSS  SFYLPL+V++  Y ++Y  A   TKSL+ G K+    S     E+ LRIH
Sbjct:   196 LFSSLFSFYLPLMVILVMYIRVYIVARRTTKSLEAGVKRERDKSM----EVVLRIH 247

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NK17 F1NK17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
 Identities = 88/204 (43%), Positives = 131/204 (64%)

Query:    68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
             GN LV+++V   R+L T TNYFI++LA+AD L+   V+PFSA  E+L   W+FG  +C+ 
Sbjct:    89 GNILVILSVACNRHLQTVTNYFIVNLAIADLLLSTTVLPFSATLEVLGF-WVFGRIFCNI 147

Query:   128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             W ++DVL  +ASI++LC+IS+DRY  +   L YP+ M+ R+A + + +VW+ S  IS   
Sbjct:   148 WAAVDVLCCSASIMSLCIISVDRYIGVKYSLKYPTIMTERKAGVILVVVWLSSMVISIGP 207

Query:   188 ILWWRAVRNEEVPKNK--CPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS 245
             +L W+    E  P ++  C  T+  GY +FSS  SFYLPL+V++  YF+IY  A   T+S
Sbjct:   208 LLGWK----EPPPPDESICSITEEPGYALFSSLFSFYLPLMVILVMYFRIYVVARRTTRS 263

Query:   246 LKVGTKQVMSGSTSGEKELTLRIH 269
             L+ G K+  + S     E+ LRIH
Sbjct:   264 LEAGVKKERNKSM----EVVLRIH 283

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001986 "negative regulation of the force of heart contraction involved in baroreceptor response to increased systemic arterial blood pressure" evidence=IEA

GO:0001994 "norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

UNIPROTKB|F1MGA6 ADRA1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 410 (149.4 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
 Identities = 90/204 (44%), Positives = 128/204 (62%)

Query:    68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
             GN LV+++V   R+L T TNYFI++LA+AD L+   V+PFSA  E+L + W+ G  +CD 
Sbjct:    62 GNILVILSVACNRHLRTPTNYFIVNLAIADLLLSFTVLPFSAALEVLGY-WVLGRIFCDI 120

Query:   128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             W ++DVL  TASIL+LC IS+DRY  +   L YPS ++ R+A + +  VW+ S  IS   
Sbjct:   121 WAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPSLVTRRKAILALLGVWVLSTVISIGP 180

Query:   188 ILWWRAVRNEEVPKN--KCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS 245
             +L W+    E  P +  +C  T+   Y +FSS  SFY+PL V++  Y ++Y  A   TK+
Sbjct:   181 LLGWK----EPAPNDDRECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIVAKRTTKN 236

Query:   246 LKVGTKQVMSGSTSGEKELTLRIH 269
             L+ G  + MS S    KELTLRIH
Sbjct:   237 LEAGVMKEMSNS----KELTLRIH 256

GO:0005886 "plasma membrane" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045819 "positive regulation of glycogen catabolic process" evidence=IEA

GO:0045818 "negative regulation of glycogen catabolic process" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001987 "vasoconstriction of artery involved in baroreceptor response to lowering of systemic arterial blood pressure" evidence=IEA

GO:0001975 "response to amphetamine" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24563	DOPR2_DROME	No assigned EC number	0.632	0.4894	0.6011	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	662
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	6e-45
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-15
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-15
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	3e-12
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-05
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	2e-05
PHA02834	323	PHA02834, PHA02834, chemokine receptor-like protei	0.001

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score =  160 bits (407), Expect = 6e-45
 Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 74  IAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDV 133
           + ++R + L T TN F+++LA+AD L  L + P++  Y +    W FG   C     L V
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGD-WPFGDALCKLVGFLFV 59

Query: 134 LFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRA 193
           +   ASIL L  IS+DRY AI  PL Y    + RRA + I +VW+ +  +S P +L+   
Sbjct: 60  VNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWL 119

Query: 194 VRNEEVPKNKCPFTD-----SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKV 248
              EE     C          + Y + S+ + F LPLLV++  Y  I R    + +S   
Sbjct: 120 RTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGAS 179

Query: 249 GTKQVMS 255
             +   S
Sbjct: 180 QARAKRS 186

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 304 VSNTRIIHK--GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAV 361
           V  T I+           S +R     +KE+KAAK L +V+ VF++CWLP+ +V LL ++
Sbjct: 161 VCYTLILRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSL 220

Query: 362 CTKCFWSEQDEELISAVVTWLGWINSGMNPVIY 394
           C    W  +       +  WL ++NS +NP+IY
Sbjct: 221 CPLSIW--RLLPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 563 VSNTRIIHK--GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAV 620
           V  T I+           S +R     +KE+KAAK L +V+ VF++CWLP+ +V LL ++
Sbjct: 161 VCYTLILRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSL 220

Query: 621 CTKCFWSEQDEELISAVVTWLGWINSGMNPVIY 653
           C    W  +       +  WL ++NS +NP+IY
Sbjct: 221 CPLSIW--RLLPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 11/191 (5%)

Query: 52  TLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALY 111
            L+V   ++F    + GN +V I V+ +  + T  + ++++LA++D L+ ++ +PF   Y
Sbjct: 42  ILIVVYSTIFFF-GLVGNIIV-IYVLTKTKIKTPMDIYLLNLAVSD-LLFVMTLPFQIYY 98

Query: 112 ELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYI 171
            +L   W FG   C     L  +    S+  + V+S+DRY AI  P+      + +  YI
Sbjct: 99  YILF-QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYI 157

Query: 172 WIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYL------IFSSTISFYLPL 225
              ++WI S   + P IL+    + +      C F ++K            + I   +PL
Sbjct: 158 VSLVIWIISIIETTP-ILFVYTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPL 216

Query: 226 LVMVFTYFKIY 236
            ++++ Y KI 
Sbjct: 217 TILLYCYSKIL 227

Length = 335

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTD-----SKGYLIFSSTISFYL 482
            VLI + + +  L+   P +  W     EE     C          + Y + S+ + F L
Sbjct: 96  KVLILVVWVLALLLSLPPLLFSWL-RTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVL 154

Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMS 514
           PLLV++  Y  I R    + +S     +   S
Sbjct: 155 PLLVILVCYTLILRTLRKRARSGASQARAKRS 186

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 62/275 (22%), Positives = 122/275 (44%), Gaps = 33/275 (12%)

Query: 2   ELLPADFINNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVST---L 58
           E++P +   +     NS++ +        +TYD+     +   L   + + +  S    +
Sbjct: 42  EIIPTEIPTSESPSPNSNSSSSSSSSSSSITYDYEYENNITYELINIKNKCMYPSISEYI 101

Query: 59  SLFSLVT----VFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELL 114
            +F ++     +FGNA + I ++  + + T T+ +I +LA++D L+ ++  PF  +Y   
Sbjct: 102 KIFYIIIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISD-LIFVIDFPF-IIYNEF 158

Query: 115 DHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIA 174
           D  WIFG   C    +   +   +++  + ++S+DRY+AI  P+++    +     I   
Sbjct: 159 DQ-WIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCI 217

Query: 175 IVWICSGGISFPA--------ILWWRAVRNEEVPKNKCPFTDS---------KGYLIFSS 217
           I WI S  I+ PA        I++     NE +   +C   +             L F  
Sbjct: 218 ISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEI 277

Query: 218 TI-SFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTK 251
            I   ++P+++  F Y KI    +++ K LK   K
Sbjct: 278 NILGMFIPIIIFAFCYIKI----ILKLKQLKKSKK 308

Length = 417

>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 40/190 (21%), Positives = 93/190 (48%), Gaps = 17/190 (8%)

Query: 53  LLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYE 112
           +    L +F L+   GN LV+  ++ +R++    + ++ ++A++D ++ +   PF    +
Sbjct: 33  VFYILLFIFGLI---GNVLVIAVLIVKRFMFV-VDVYLFNIAMSDLML-VFSFPFIIHND 87

Query: 113 LLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIW 172
           L  + WIFG   C     +  +   +++  + +IS+DRY  + +     ++  +    + 
Sbjct: 88  L--NEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLS 145

Query: 173 IAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISF-------YLPL 225
           +A  W+CS  +S PA++ +     + +   +C F D      +S+  +F        +PL
Sbjct: 146 VA-AWVCSVILSMPAMVLYYVDNTDNL--KQCIFNDYHENFSWSAFFNFEINIFGIVIPL 202

Query: 226 LVMVFTYFKI 235
           +++++ Y KI
Sbjct: 203 IILIYCYSKI 212

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	662
KOG4219|consensus	423		100.0
KOG4220|consensus	503		100.0
PHA03234	338	DNA packaging protein UL33; Provisional	100.0
PHA03235	409	DNA packaging protein UL33; Provisional	100.0
PHA02834	323	chemokine receptor-like protein; Provisional	100.0
PHA02638	417	CC chemokine receptor-like protein; Provisional	100.0
PHA03087	335	G protein-coupled chemokine receptor-like protein;	100.0
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.97
KOG4220|consensus	503		99.94
KOG2087|consensus	363		99.9
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.86
KOG4219|consensus	423		99.84
PHA03234	338	DNA packaging protein UL33; Provisional	99.84
PHA03235	409	DNA packaging protein UL33; Provisional	99.83
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.83
PHA02834	323	chemokine receptor-like protein; Provisional	99.79
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.77
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.73
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.71
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.68
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	99.65
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	99.58
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	99.56
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	99.51
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	99.12
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	99.11
KOG2087|consensus	363		98.9
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.83
KOG4193|consensus	610		98.68
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	98.6
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	98.6
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	98.55
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	98.53
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.46
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	98.33
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	98.23
KOG4564|consensus	473		98.22
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	98.21
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	98.18
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	98.17
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	98.01
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	97.99
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	97.66
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	97.6
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	97.56
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	97.46
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	97.39
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	97.22
PF02076	283	STE3: Pheromone A receptor; InterPro: IPR001499 G-	97.16
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.04
PF01534	328	Frizzled: Frizzled/Smoothened family membrane regi	96.7
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	96.16
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	96.06
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	95.81
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	95.58
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	95.03
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	94.3
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	94.16
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	94.03
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	92.83
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	92.29
PF13853	144	7tm_4: Olfactory receptor	89.41
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	88.28

>KOG4219|consensus

Probab=100.00  E-value=1.8e-42  Score=326.80  Aligned_cols=293  Identities=26%  Similarity=0.446  Sum_probs=245.8

Q ss_pred             hHhHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhcccccccccc
Q psy5093          44 WLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLN  123 (662)
Q Consensus        44 ~~~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~  123 (662)
                      +....+.+.+.+++++++.+++++||.+|++++..+|++|+.+|+|++|||+||++.+++..++.....+ ..+|.+|.+
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal-~~~W~~G~f  106 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYAL-HQEWYFGSF  106 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-Hhccccccc
Confidence            4456667899999999999999999999999999999999999999999999999999999998777665 468999999


Q ss_pred             chhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCC---C
Q psy5093         124 WCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEV---P  200 (662)
Q Consensus       124 ~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~---~  200 (662)
                      +|++..|+..+...+|++++++||+|||.||.+|++.  +.+++...++++++|++++++++|..+..........   .
T Consensus       107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~--r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~  184 (423)
T KOG4219|consen  107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQP--RPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGES  184 (423)
T ss_pred             eeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhccc--CCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcc
Confidence            9999999999999999999999999999999999984  3899999999999999999999999987655533221   1


Q ss_pred             CCcc---------ccCC----CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceee
Q psy5093         201 KNKC---------PFTD----SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLR  267 (662)
Q Consensus       201 ~~~c---------~~~~----~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (662)
                      ...|         ....    ...|.....++.+++|++++.++|..|.+++|..+.....                   
T Consensus       185 ~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~-------------------  245 (423)
T KOG4219|consen  185 RVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQ-------------------  245 (423)
T ss_pred             eEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccch-------------------
Confidence            1222         2111    2337888899999999999999999999999975421100                   


Q ss_pred             eccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHh
Q psy5093         268 IHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIV  347 (662)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i  347 (662)
                                                                           ..+..+..+..+|+.||++++++.|.+
T Consensus       246 -----------------------------------------------------~d~~~~~~kak~K~vkmliiVV~~Fai  272 (423)
T KOG4219|consen  246 -----------------------------------------------------QDRKHEQLKAKKKVVKMLIIVVVIFAI  272 (423)
T ss_pred             -----------------------------------------------------hchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                 002223445788999999999999999


Q ss_pred             hhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093         348 CWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI  412 (662)
Q Consensus       348 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~  412 (662)
                      ||+|+.+..++....++.. ........+....||+..|+++||+||++.|++||.++++.||.|
T Consensus       273 cWlPyh~y~il~~~~~~i~-~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c  336 (423)
T KOG4219|consen  273 CWLPYHIYFILNATNPEIN-RKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC  336 (423)
T ss_pred             hccChhHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence            9999999999987654422 344556678899999999999999999999999999999999775

>KOG4220|consensus

Probab=100.00  E-value=7.7e-42  Score=320.79  Aligned_cols=356  Identities=32%  Similarity=0.497  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHH
Q psy5093          51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRS  130 (662)
Q Consensus        51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~  130 (662)
                      .+.++++.++++++.++||++|++.+--+|++++..|+|+++||+|||+.|++.+|+...+.+ -+.|++|...|.+...
T Consensus        30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~l-mg~W~LG~~~CdlWLa  108 (503)
T KOG4220|consen   30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTL-MGYWPLGPLVCDLWLA  108 (503)
T ss_pred             EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHH-HcccccchHHHHHHHH
Confidence            456777888999999999999999999999999999999999999999999999997776655 5789999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcccc-CCCCCCcc--ccC
Q psy5093         131 LDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN-EEVPKNKC--PFT  207 (662)
Q Consensus       131 ~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-~~~~~~~c--~~~  207 (662)
                      +.++...+|++.+..|++|||+.|.+|+.|+.+.|++++..++++.|++++++-.|.+++|..... .....+.|  ++-
T Consensus       109 lDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFl  188 (503)
T KOG4220|consen  109 LDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFL  188 (503)
T ss_pred             HHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEee
Confidence            999999999999999999999999999999999999999999999999999999999999876643 34555666  444


Q ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccC--------C------------CCCCcc--c-
Q psy5093         208 DSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSG--------S------------TSGEKE--L-  264 (662)
Q Consensus       208 ~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~--------~------------~~~~~~--~-  264 (662)
                      .......-..+..|.+|+++|.+.|.+|++..+++.+.....+....+.        +            .+++..  . 
T Consensus       189 snp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~  268 (503)
T KOG4220|consen  189 SNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPL  268 (503)
T ss_pred             cCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccC
Confidence            4555556667788999999999999999999998877544222111000        0            000000  0 


Q ss_pred             -e--eeeccCCCCCCCCccC---CCCCCccc--------------------------------ccc-----------ccc
Q psy5093         265 -T--LRIHRGGTDHRHMTLH---HTPSDDVE--------------------------------MDN-----------VMS  295 (662)
Q Consensus       265 -~--~~~~~~~~~~~~~~~~---~~~~~~~~--------------------------------~~~-----------~~~  295 (662)
                       .  .+..+.....+.....   ..++++..                                .+.           .+.
T Consensus       269 ~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~  348 (503)
T KOG4220|consen  269 TNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQM  348 (503)
T ss_pred             CCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccC
Confidence             0  0000000000000000   00000000                                000           000


Q ss_pred             cCC-Cccc-------cccccccccccccccc--------------------cccccchhhHHhhhhhHHHHHHHHHHHHh
Q psy5093         296 GHN-GITR-------QVSNTRIIHKGHIVKN--------------------FSLSRKLSKFAKEKKAAKTLGIVMGVFIV  347 (662)
Q Consensus       296 ~~~-~~~~-------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~i~~~f~i  347 (662)
                      .+. +...       ........+.....++                    ...++++....+|+|+++++.+|.+.|++
T Consensus       349 ~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIi  428 (503)
T KOG4220|consen  349 LPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFIL  428 (503)
T ss_pred             CCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence            000 0000       0000000000000000                    01111222347899999999999999999


Q ss_pred             hhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093         348 CWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI  412 (662)
Q Consensus       348 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~  412 (662)
                      +|.||.|+.++..++.+|.     +..+..+..||.|+||-+||++|.+.|..||+.+|+++.+.
T Consensus       429 TWtPYNImVlv~tFC~~Ci-----P~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr  488 (503)
T KOG4220|consen  429 TWTPYNIMVLVNTFCKNCI-----PETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCR  488 (503)
T ss_pred             HcccceeeeehHhhccccc-----chhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheee
Confidence            9999999999999987654     67888999999999999999999999999999998865443

>PHA03234 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=6.8e-39  Score=319.61  Aligned_cols=281  Identities=19%  Similarity=0.236  Sum_probs=212.2

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHhhHhhhhhee--ccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhcccccccccc
Q psy5093          46 ELAQQRTLLVSTLSLFSLVTVFGNALVMIAVV--RERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLN  123 (662)
Q Consensus        46 ~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~--~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~  123 (662)
                      ..+..+.+..++|.+++++|++||+++++++.  +++++|+++|+|++|||++|++.++ .+|+.+...  ...|.+|+.
T Consensus        27 ~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~--~~~w~fG~~  103 (338)
T PHA03234         27 TLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR--EALFNFNQA  103 (338)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH--hCCccCchh
Confidence            44557788999999999999999999999554  5566789999999999999999965 466555433  357999999


Q ss_pred             chhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCc
Q psy5093         124 WCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNK  203 (662)
Q Consensus       124 ~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~  203 (662)
                      +|++..++..+...+|++++++||+|||++|++|.+++.  ++++....+++.|+.+++.++|.++....... +.....
T Consensus       104 lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~-~~~~~~  180 (338)
T PHA03234        104 FCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGK-KGNYGK  180 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeec-CCCCCc
Confidence            999999999999999999999999999999999987642  33444455666799999999998865433222 112245


Q ss_pred             cccCCC--cchhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCC
Q psy5093         204 CPFTDS--KGYLIF------SSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDH  275 (662)
Q Consensus       204 c~~~~~--~~~~~~------~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (662)
                      |.....  ..+..+      ..++++++|++++++||.+|.+++++.++                               
T Consensus       181 C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~-------------------------------  229 (338)
T PHA03234        181 CNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTE-------------------------------  229 (338)
T ss_pred             CcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------------------------
Confidence            644332  222221      22335689999999999999988865211                               


Q ss_pred             CCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHH
Q psy5093         276 RHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVV  355 (662)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~  355 (662)
                                                                           ++++|++|++++++++|++||+|+++.
T Consensus       230 -----------------------------------------------------~~~~k~~k~i~~vv~vF~iCWlPy~iv  256 (338)
T PHA03234        230 -----------------------------------------------------KKHKKTLFFIRILILSFLCIQIPNIAI  256 (338)
T ss_pred             -----------------------------------------------------hhhhhhhhHHHHHHHHHHHHHhHHHHH
Confidence                                                                 056789999999999999999999998


Q ss_pred             HHHHHhhccc----cCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCccc
Q psy5093         356 NLLSAVCTKC----FWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVV  416 (662)
Q Consensus       356 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~~  416 (662)
                      .++.......    ............++..++++||++||+||++.+++||+++++++++..+.+
T Consensus       257 ~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~~~~~  321 (338)
T PHA03234        257 LICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDFFKCN  321 (338)
T ss_pred             HHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Confidence            8765432110    001112334567888999999999999999999999999888776654443

>PHA03235 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=9e-37  Score=310.89  Aligned_cols=283  Identities=18%  Similarity=0.204  Sum_probs=212.5

Q ss_pred             hhhhHhHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccc--cchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccc
Q psy5093          41 LERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYL--HTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNW  118 (662)
Q Consensus        41 ~~~~~~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~l--r~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~  118 (662)
                      ++..+..+..+.+..+++.+++++|++||+++++++.++++.  ++..++|++|||++|++. ++.+|+.+...  ...|
T Consensus        22 c~~~~~~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~--~~~~   98 (409)
T PHA03235         22 CVPTEGLSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN--QGLL   98 (409)
T ss_pred             CCchhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc--Cccc
Confidence            334445566778899999999999999999999875533332  356689999999999987 56788765432  2233


Q ss_pred             cccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcc----
Q psy5093         119 IFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAV----  194 (662)
Q Consensus       119 ~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~----  194 (662)
                      ..++..|++..++..+...+|++++++||+|||++|++|.++ +..+++++..+++++|+.+++.++|..+.....    
T Consensus        99 ~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~-~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~  177 (409)
T PHA03235         99 SGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA-RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDD  177 (409)
T ss_pred             cCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc-cCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            445789999999999999999999999999999999999764 445788899999999999999999976543221    


Q ss_pred             -ccCCCCCCccccCCCc--------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccce
Q psy5093         195 -RNEEVPKNKCPFTDSK--------GYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELT  265 (662)
Q Consensus       195 -~~~~~~~~~c~~~~~~--------~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (662)
                       .........|......        .|.....++.+++|++++++||.+|+++++++.++                    
T Consensus       178 ~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~--------------------  237 (409)
T PHA03235        178 VDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK--------------------  237 (409)
T ss_pred             cCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------------
Confidence             1112234457432211        13334556678999999999999999998865321                    


Q ss_pred             eeeccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHH
Q psy5093         266 LRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVF  345 (662)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f  345 (662)
                                                                                      +++|..++++++++.|
T Consensus       238 ----------------------------------------------------------------~~~k~~~~v~iivv~F  253 (409)
T PHA03235        238 ----------------------------------------------------------------KRSRTLTFVCILLLSF  253 (409)
T ss_pred             ----------------------------------------------------------------cchhhhhhHHHHHHHH
Confidence                                                                            3346678888999999


Q ss_pred             HhhhhhHHHHHHHHHhhccc----cCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhccc
Q psy5093         346 IVCWLPFFVVNLLSAVCTKC----FWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHK  411 (662)
Q Consensus       346 ~i~~~P~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~  411 (662)
                      ++||+|+.++.++..+....    .........+..+..+++++|+++||+||++++++||+++++.+++
T Consensus       254 ~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~  323 (409)
T PHA03235        254 LCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG  323 (409)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence            99999999998876543210    0011223456678889999999999999999999999999887754

>PHA02834 chemokine receptor-like protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=302.87  Aligned_cols=275  Identities=18%  Similarity=0.380  Sum_probs=210.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHH
Q psy5093          50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWR  129 (662)
Q Consensus        50 ~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~  129 (662)
                      ...+..+++.++.++|++||+++++++.++++ +++.++|++|||++|++. ++.+|+.+....  ++|.+|+..|++..
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~--~~w~~g~~~C~~~~  102 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL--NEWIFGEFMCKLVL  102 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc--CCcCCcchHHHhHH
Confidence            35567899999999999999999998887665 457899999999999987 667887654432  46999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCC
Q psy5093         130 SLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDS  209 (662)
Q Consensus       130 ~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  209 (662)
                      ++......+|++++++||+|||++|++|++++. .+.+++..+++++|+++++.++|+.+.+.....  .....|.....
T Consensus       103 ~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~--~~~~~C~~~~~  179 (323)
T PHA02834        103 GVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT--DNLKQCIFNDY  179 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccC--CCceEEeccCC
Confidence            999999999999999999999999999998644 455677788889999999999998776543211  12234642221


Q ss_pred             -cc---h---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCC
Q psy5093         210 -KG---Y---LIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHH  282 (662)
Q Consensus       210 -~~---~---~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (662)
                       ..   +   .....++.+++|+++++++|.+|.+.+++++++                                     
T Consensus       180 ~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~~-------------------------------------  222 (323)
T PHA02834        180 HENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKNK-------------------------------------  222 (323)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------------------------------
Confidence             11   1   112346788999999999999999988753210                                     


Q ss_pred             CCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q psy5093         283 TPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC  362 (662)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~  362 (662)
                                                                     +++|.+|+++++++.|++||+|+.+..++..+.
T Consensus       223 -----------------------------------------------~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~  255 (323)
T PHA02834        223 -----------------------------------------------NKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQ  255 (323)
T ss_pred             -----------------------------------------------ccceEEeehhHHHHHHHHHHhhHHHHHHHHHHH
Confidence                                                           345678899999999999999999998876553


Q ss_pred             ccccCC--Cc---hhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093         363 TKCFWS--EQ---DEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV  415 (662)
Q Consensus       363 ~~~~~~--~~---~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~  415 (662)
                      ......  ..   .......+..+++++|+++||+||++.+++||+++++++|+..+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~~~  313 (323)
T PHA02834        256 SVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTNNI  313 (323)
T ss_pred             HhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhhhh
Confidence            211101  01   111234577889999999999999999999999999998776554

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=100.00  E-value=2.9e-35  Score=301.47  Aligned_cols=276  Identities=21%  Similarity=0.400  Sum_probs=217.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHH
Q psy5093          50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWR  129 (662)
Q Consensus        50 ~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~  129 (662)
                      ......+++.+++++|++||+++++++.+ |++|++++++++|||++|++. ++.+|+++...  .++|.+|+..|++..
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~--~~~W~fg~~~Ck~~~  172 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE--FDQWIFGDFMCKVIS  172 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH--hccccccccchhhHH
Confidence            45678888999999999999999977654 778999999999999999988 55788776544  357999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccc------cCC--CCC
Q psy5093         130 SLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVR------NEE--VPK  201 (662)
Q Consensus       130 ~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~------~~~--~~~  201 (662)
                      ++......++++.++++++|||++|++|.++++..+++...+.++++|+++++.++|+++..+...      ..+  ...
T Consensus       173 ~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~  252 (417)
T PHA02638        173 ASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISN  252 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccC
Confidence            999999999999999999999999999999877778788888899999999999999988765331      111  112


Q ss_pred             CccccCCC--c---c-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccC
Q psy5093         202 NKCPFTDS--K---G-----YLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRG  271 (662)
Q Consensus       202 ~~c~~~~~--~---~-----~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (662)
                      ..|.....  .   .     +.....++.+++|++++++||.+|++++++.+++                          
T Consensus       253 ~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~--------------------------  306 (417)
T PHA02638        253 YQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKS--------------------------  306 (417)
T ss_pred             CeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------------
Confidence            35533221  1   1     1222346678899999999999999998764221                          


Q ss_pred             CCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhh
Q psy5093         272 GTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLP  351 (662)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P  351 (662)
                                                                                +++|.+|+++++++.|++||+|
T Consensus       307 ----------------------------------------------------------~k~k~~rli~~ivi~f~lcW~P  328 (417)
T PHA02638        307 ----------------------------------------------------------KKTKSIIIVSIIIICSLICWIP  328 (417)
T ss_pred             ----------------------------------------------------------ccchhhhhHHHHHHHHHHHHhh
Confidence                                                                      3557789999999999999999


Q ss_pred             HHHHHHHHHhhccccC-------CC--chhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093         352 FFVVNLLSAVCTKCFW-------SE--QDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS  413 (662)
Q Consensus       352 ~~i~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~  413 (662)
                      +.+..++..+......       +.  ........++..++++|+++||+||++.+++||+++++++++..
T Consensus       329 y~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~  399 (417)
T PHA02638        329 LNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF  399 (417)
T ss_pred             HHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence            9999888765421110       00  12334556788999999999999999999999999988886655

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=100.00  E-value=6.7e-33  Score=280.85  Aligned_cols=281  Identities=25%  Similarity=0.385  Sum_probs=219.2

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccch
Q psy5093          46 ELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWC  125 (662)
Q Consensus        46 ~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C  125 (662)
                      ..+..+.+..+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|..+... ....|..++..|
T Consensus        35 ~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~-~~~~~~~~~~~C  111 (335)
T PHA03087         35 GYDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYY-ILFQWSFGEFAC  111 (335)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHH-hCCCCCCCcHHH
Confidence            4456678889999999999999999999998887 8899999999999999998855 466555333 346788899999


Q ss_pred             hHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcc-
Q psy5093         126 DSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKC-  204 (662)
Q Consensus       126 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c-  204 (662)
                      ++..++......+|.+++++||+|||++|++|++|+...+.+++..+++++|+++++.++|+...+.......  ...| 
T Consensus       112 ~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~--~~~C~  189 (335)
T PHA03087        112 KIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHE--TLICC  189 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCC--CceEE
Confidence            9999999999999999999999999999999999999999999999999999999999998877654432222  2233 


Q ss_pred             ccCCCc--chh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCC
Q psy5093         205 PFTDSK--GYL----IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHM  278 (662)
Q Consensus       205 ~~~~~~--~~~----~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (662)
                      ......  .+.    ....++.+++|.++++++|.+|.+.++++.++                                 
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~---------------------------------  236 (335)
T PHA03087        190 MFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKS---------------------------------  236 (335)
T ss_pred             ecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------------------
Confidence            222211  111    12345668899999999999998887654220                                 


Q ss_pred             ccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHH
Q psy5093         279 TLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLL  358 (662)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~  358 (662)
                                                                        ++++|++|++.++++.|++||+|+.+..++
T Consensus       237 --------------------------------------------------~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~  266 (335)
T PHA03087        237 --------------------------------------------------KKNKKAIKLVLIIVILFVIFWLPFNVSVFV  266 (335)
T ss_pred             --------------------------------------------------hhcchHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                                                              156688999999999999999999998776


Q ss_pred             HHhhccccCC----CchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCc
Q psy5093         359 SAVCTKCFWS----EQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISP  414 (662)
Q Consensus       359 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~  414 (662)
                      ..........    ......+..+...+..+|+++||+||++++++||+++|++++...+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~  326 (335)
T PHA03087        267 YSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFT  326 (335)
T ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhh
Confidence            5432111101    1122345567788999999999999999999999998888755443

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.97  E-value=2e-30  Score=253.65  Aligned_cols=253  Identities=35%  Similarity=0.596  Sum_probs=213.5

Q ss_pred             hhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHHHHHHH
Q psy5093          68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVIS  147 (662)
Q Consensus        68 gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia  147 (662)
                      ||+++++++.++|++|++.++|++|||++|++.++...|....... .+.|..++..|++..++..+....+.+++++++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is   79 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLL-FDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAIS   79 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999999999998887775554443 367888999999999999999999999999999


Q ss_pred             HHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCc----chhhhhHHHHHHH
Q psy5093         148 LDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSK----GYLIFSSTISFYL  223 (662)
Q Consensus       148 idRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~~~~~i  223 (662)
                      +|||++|++|.+|++..+++++..+++++|+++++.++|+.+..............|......    .+.....++.+++
T Consensus        80 ~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~  159 (257)
T PF00001_consen   80 IDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFIL  159 (257)
T ss_dssp             HHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999988755444433335677665543    3667778888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccccccCCCcccc
Q psy5093         224 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQ  303 (662)
Q Consensus       224 p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (662)
                      |+++++++|.+|++.++++.++.+....                                                    
T Consensus       160 p~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------------------------------------  187 (257)
T PF00001_consen  160 PLIIILICYIRILRKLRRQRKRIKSQSS----------------------------------------------------  187 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTCCHTS----------------------------------------------------
T ss_pred             ceeeeeeecccccccccccccccccccc----------------------------------------------------
Confidence            9999999999999999998875432110                                                    


Q ss_pred             ccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHH
Q psy5093         304 VSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLG  383 (662)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  383 (662)
                                        +..+++.++++|.++++.+++++|++||+|+.+..++....+..  .. .......+..++.
T Consensus       188 ------------------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~--~~-~~~~~~~~~~~l~  246 (257)
T PF00001_consen  188 ------------------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS--SL-ISSILFYISYFLA  246 (257)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS--TC-SHHHHHHHHHHHH
T ss_pred             ------------------cccccccccccccccccccccccccccCCceeHHHHHHHHcCcc--ch-hhHHHHHHHHHHH
Confidence                              22334455899999999999999999999999999988876543  11 5778889999999


Q ss_pred             Hhhccccchhh
Q psy5093         384 WINSGMNPVIY  394 (662)
Q Consensus       384 ~~ns~~nP~IY  394 (662)
                      ++|+++||+||
T Consensus       247 ~~~s~~nP~iY  257 (257)
T PF00001_consen  247 FLNSCLNPIIY  257 (257)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHhhCcEEC
Confidence            99999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG4220|consensus

Probab=99.94  E-value=2.9e-26  Score=216.29  Aligned_cols=294  Identities=22%  Similarity=0.312  Sum_probs=178.4

Q ss_pred             hhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcccccCCccccccee
Q psy5093         349 WLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYL  428 (662)
Q Consensus       349 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~~~~y~~~~~~~~~  428 (662)
                      -+|.+..+++....+-    ......+......++.-.|++|-+|..+         -|.|+--  +...|+-.++.+++
T Consensus        83 SMnl~t~Y~lmg~W~L----G~~~CdlWLalDYvaSNASVmNLLiISF---------DRYFsVT--rPLtYrakRTtkrA  147 (503)
T KOG4220|consen   83 SMNLYTTYTLMGYWPL----GPLVCDLWLALDYVASNASVMNLLIISF---------DRYFSVT--RPLTYRAKRTTKRA  147 (503)
T ss_pred             echHHHHHHHHccccc----chHHHHHHHHHHHHhhhhhhhhhheeee---------ecceeec--ccccccccccchHH
Confidence            4677666666544321    1122223344455555667777777654         2223332  33469999999999


Q ss_pred             eeehhhHHHHHHhhchhhhhhcccccC-CccCCCCc--eecCCchhHhhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy5093         429 VLISLCYYVTTLVLTAPAILWWRAVRN-EEVPKNKC--PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL  505 (662)
Q Consensus       429 ~~~~~~~w~~~~~~~~p~~~~~~~~~~-~~~~~~~C--~~~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~~~~~~~~  505 (662)
                      .++++++|+++++++.|.+++|....+ ...+..+|  .|.++.+...-..+..|.+|..||.+.|.|||+..+++.+..
T Consensus       148 ~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~  227 (503)
T KOG4220|consen  148 GLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKEL  227 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998754 34566789  566677777888899999999999999999999999877654


Q ss_pred             ccCcccc------cCCCCC-------Cccc-ccc--------------cccCCCCCCC----CCcccCCCCC--------
Q psy5093         506 KVGTKQV------MSGSTS-------GEKE-LTL--------------RIHRGGTDHR----HMTLHHTPSD--------  545 (662)
Q Consensus       506 ~~~~~~~------~~~~~~-------~~~~-~~~--------------~~~~~~~~~~----~~~~~~~~~~--------  545 (662)
                      ...+...      ......       +.++ ...              ...+...+.+    +..++.++..        
T Consensus       228 ~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~  307 (503)
T KOG4220|consen  228 AKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSP  307 (503)
T ss_pred             hhcccccccccccccCcccccccccCCCCCCCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCC
Confidence            4322211      000000       0000 000              0000000000    0000000000        


Q ss_pred             --Ccccc--------ccccC----------CCC---cc--------ccc---C----Cccc-----ccccccc-------
Q psy5093         546 --DVEMD--------NVMSG----------HNG---IT--------RQV---S----NTRI-----IHKGHIV-------  575 (662)
Q Consensus       546 --~~~~~--------~~~~~----------~~~---~~--------~~~---~----~~~~-----~~~~~~~-------  575 (662)
                        +...+        ..+.+          .+.   .+        .+.   +    ++..     ..+....       
T Consensus       308 ~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~  387 (503)
T KOG4220|consen  308 LERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTG  387 (503)
T ss_pred             ccccccccccccceeccCCCCcCCCCccccccccccccccCCCCCCcccccccccccccCCccCccccccccCccccccc
Confidence              00000        00000          000   00        000   0    0000     0000000       


Q ss_pred             --------cc--cchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHh
Q psy5093         576 --------KN--FSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWIN  645 (662)
Q Consensus       576 --------~~--~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~n  645 (662)
                              +.  ....+++....+|+|++|++..+++.|++||.||+|+.++..||++|.     +..++.++.||.|.|
T Consensus       388 ~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~Ci-----P~tlW~~gYwLCYIN  462 (503)
T KOG4220|consen  388 LDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCI-----PETLWTFGYWLCYIN  462 (503)
T ss_pred             hhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccccc-----chhHhhhhhheeeec
Confidence                    00  111122223478999999999999999999999999999999998875     778889999999999


Q ss_pred             hhhhHHHHHhccccccC
Q psy5093         646 SGMNPVIYACWSRDFRR  662 (662)
Q Consensus       646 s~iNPiiY~~~~~~fR~  662 (662)
                      |.+||+.|+++|..||+
T Consensus       463 STiNP~CYALCNatFrk  479 (503)
T KOG4220|consen  463 STINPLCYALCNATFRK  479 (503)
T ss_pred             ccccHHHHHHHhHHHHH
Confidence            99999999999999995

>KOG2087|consensus

Probab=99.90  E-value=8.9e-25  Score=205.30  Aligned_cols=274  Identities=20%  Similarity=0.308  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccc------cccccccc
Q psy5093          51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDH------NWIFGLNW  124 (662)
Q Consensus        51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~------~~~~~~~~  124 (662)
                      ..++-+...++.+++++||.+|+......+...++..+++.|||.+|++.++....+...+....+      .|..+...
T Consensus        24 ~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~g  103 (363)
T KOG2087|consen   24 YWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLG  103 (363)
T ss_pred             cceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCC
Confidence            455667778899999999999999998888877899999999999999998876655555443322      23346678


Q ss_pred             hhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcc
Q psy5093         125 CDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKC  204 (662)
Q Consensus       125 C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c  204 (662)
                      |++.+|+..+..-.|++.++.+++||++.|++|++-++....+....+++..|+.+++.++.|.++...+.    ....|
T Consensus       104 C~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~----~~~vC  179 (363)
T KOG2087|consen  104 CPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYG----ASSVC  179 (363)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCc----cccee
Confidence            99999999999999999999999999999999999888888888999999999999999999998743332    22344


Q ss_pred             -cc----CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCc
Q psy5093         205 -PF----TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMT  279 (662)
Q Consensus       205 -~~----~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (662)
                       +.    .....|....++....+.++++.++|++++..+++.......                               
T Consensus       180 lPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~-------------------------------  228 (363)
T KOG2087|consen  180 LPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATL-------------------------------  228 (363)
T ss_pred             eecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcccc-------------------------------
Confidence             22    222226667777888889999999999999887653221100                               


Q ss_pred             cCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy5093         280 LHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLS  359 (662)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~  359 (662)
                                                                        ...+.+|-+..+++.-.+||.|..++.+..
T Consensus       229 --------------------------------------------------~~~~~akr~a~LvfTd~icw~Pi~f~~~~a  258 (363)
T KOG2087|consen  229 --------------------------------------------------ISTSVAKRMAFLVFTDCICWCPIAFFKFSA  258 (363)
T ss_pred             --------------------------------------------------chhhhhhCeeEEEEccccccCchheeeeHH
Confidence                                                              223677888889999999999999999888


Q ss_pred             HhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093         360 AVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS  413 (662)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~  413 (662)
                      .++......    .....+..++.-+|+++||++|.+.++.||+.++.+..|..
T Consensus       259 l~~~~li~~----~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~  308 (363)
T KOG2087|consen  259 LIGVELISV----SYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVG  308 (363)
T ss_pred             hcCCcccCh----hhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcc
Confidence            775432211    11112233445589999999999999999999888876653

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.86  E-value=1.5e-21  Score=187.39  Aligned_cols=254  Identities=19%  Similarity=0.221  Sum_probs=184.7

Q ss_pred             HHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHH
Q psy5093          63 LVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILN  142 (662)
Q Consensus        63 i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~  142 (662)
                      ++|++||+.+++.+.++|++|++.++++..+|++|++.++..+|... ..+ . +.......|-...+...++.......
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~-~~~-~-~~~i~~~~Cf~~~~~~~f~~~~qs~~   78 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFML-FLF-R-DHQITRSECFWQIFFYIFFQCAQSVI   78 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHH-HHH-h-heeccHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999887777433 222 2 23446667999999999999999999


Q ss_pred             HHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCC--CcchhhhhHHHH
Q psy5093         143 LCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTD--SKGYLIFSSTIS  220 (662)
Q Consensus       143 l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~~~~~~  220 (662)
                      +.+|++||++||+.|.+|++..+.+..........+.+....+.     +....++.....|....  ............
T Consensus        79 ~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~-----~~~~~~~~~~~~C~pp~a~~~~~~~~~~~~~  153 (257)
T PF10320_consen   79 MLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVI-----GFLYRDDETIVICNPPLAFHGTASQIWSYSN  153 (257)
T ss_pred             HHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhh-----eeEecCCcccccCCCccccCccHHHHHHHHH
Confidence            99999999999999999999888885555545544444443322     22222333455664332  222222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccccccCCCc
Q psy5093         221 FYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGI  300 (662)
Q Consensus       221 ~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (662)
                      .++ -+++++.|...+..++++.++.                                                      
T Consensus       154 ~~i-nv~tvivY~i~~~~~~~k~~~~------------------------------------------------------  178 (257)
T PF10320_consen  154 III-NVITVIVYIITIIIFKRKSRSN------------------------------------------------------  178 (257)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHcccc------------------------------------------------------
Confidence            233 3445677777777776654420                                                      


Q ss_pred             cccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHH
Q psy5093         301 TRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVT  380 (662)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (662)
                                                 ..+++|+.|.+..+++.|+.+|.-..+...+....+.   +.+....+.....
T Consensus       179 ---------------------------~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~---~~~~~~~i~~~~~  228 (257)
T PF10320_consen  179 ---------------------------SSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGL---DGETIAIIQMYAG  228 (257)
T ss_pred             ---------------------------chhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHH
Confidence                                       0168899999999999999999887777766654332   2333455677888


Q ss_pred             HHHHhhccccchhhhhcChhHHHHHHHhc
Q psy5093         381 WLGWINSGMNPVIYACWSRDFRSKEKILN  409 (662)
Q Consensus       381 ~l~~~ns~~nP~IY~~~~~~fR~~~~~l~  409 (662)
                      ++..++.+.|.+||.++|+|||+++|++|
T Consensus       229 i~v~~~~s~~ffV~~~~S~EYR~af~~~~  257 (257)
T PF10320_consen  229 IFVNISYSQNFFVYYWRSSEYRKAFRELF  257 (257)
T ss_pred             HHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence            99999999999999999999999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG4219|consensus

Probab=99.84  E-value=3.7e-21  Score=182.91  Aligned_cols=167  Identities=23%  Similarity=0.399  Sum_probs=128.3

Q ss_pred             cccceeeeehhhHHHHHHhhchhhhhhcccccCCc---cCCCCc---------eecC----CchhHhhhhhHHHHHhHHH
Q psy5093         423 MYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEE---VPKNKC---------PFTD----SKGYLIFSSTISFYLPLLV  486 (662)
Q Consensus       423 ~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~---~~~~~C---------~~~~----~~~y~~~~~~~~f~lP~~i  486 (662)
                      .+++...++++++|+.|+++++|..+..+..+.+.   .....|         .-..    .+.|.....++.+++|++|
T Consensus       145 ~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliV  224 (423)
T KOG4219|consen  145 PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIV  224 (423)
T ss_pred             CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHH
Confidence            67888999999999999999999998876553221   112334         1111    1348888889999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCc
Q psy5093         487 MVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNT  566 (662)
Q Consensus       487 i~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (662)
                      +.++|.+|.+++|+.+.....+                                                          
T Consensus       225 l~~~Yt~iav~LW~~~~~gd~~----------------------------------------------------------  246 (423)
T KOG4219|consen  225 LGLAYTVIAVTLWGRRIPGDQQ----------------------------------------------------------  246 (423)
T ss_pred             HHHHHHHHHHHHHhccCccchh----------------------------------------------------------
Confidence            9999999999999754111000                                                          


Q ss_pred             ccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhh
Q psy5093         567 RIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINS  646 (662)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns  646 (662)
                                    -++.+..+.++|+.||+++|++.|.+||+||++..++....+... ..+.....+....||++.|+
T Consensus       247 --------------d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~-~~k~i~~vyl~~~WLaMSst  311 (423)
T KOG4219|consen  247 --------------DRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEIN-RKKFIQQVYLAIYWLAMSST  311 (423)
T ss_pred             --------------chhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence                          022334568889999999999999999999999999987655322 33556677888999999999


Q ss_pred             hhhHHHHHhccccccC
Q psy5093         647 GMNPVIYACWSRDFRR  662 (662)
Q Consensus       647 ~iNPiiY~~~~~~fR~  662 (662)
                      |.||+||+++|++||.
T Consensus       312 ~yNPiIY~~lN~Rfr~  327 (423)
T KOG4219|consen  312 CYNPIIYCFLNKRFRG  327 (423)
T ss_pred             hhccHhhhhhHHHHHH
Confidence            9999999999999983

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.84  E-value=1.4e-19  Score=181.03  Aligned_cols=147  Identities=21%  Similarity=0.315  Sum_probs=103.8

Q ss_pred             eehhhHHHHHHhhchhhhhhcccccCCccCCCCceecC--CchhHhh------hhhHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5093         430 LISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTD--SKGYLIF------SSTISFYLPLLVMVFTYFKIYRAAVVQ  501 (662)
Q Consensus       430 ~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~--~~~y~~~------~~~~~f~lP~~ii~~~Y~~I~~~~~~~  501 (662)
                      ..+.++|+.+++.++|.++...... .+.+...|....  +..|..+      ..++.|++|+++|++||.+|.++++++
T Consensus       149 ~~i~~~Wi~s~l~~~P~l~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~  227 (338)
T PHA03234        149 RNIGILFLASAMCAIPAALFVKTEG-KKGNYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL  227 (338)
T ss_pred             HHHHHHHHHHHHHHhhHhHeeeeee-cCCCCCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456679999999999876544321 111224684322  2233222      223357899999999999999888642


Q ss_pred             hhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCcccccccccccccchh
Q psy5093         502 TKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLS  581 (662)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (662)
                      ..                                                                              
T Consensus       228 ~~------------------------------------------------------------------------------  229 (338)
T PHA03234        228 TE------------------------------------------------------------------------------  229 (338)
T ss_pred             hh------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhc-----ccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhc
Q psy5093         582 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCT-----KCFWSEQDEELISAVVTWLGWINSGMNPVIYACW  656 (662)
Q Consensus       582 ~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~  656 (662)
                            ++++|++|++++++++|++||+||++..++..+..     +|. .....+..+.++.+|+++|||+||+||++.
T Consensus       230 ------~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~-~~~~~~~~~~v~~~La~~nsclNPiIY~f~  302 (338)
T PHA03234        230 ------KKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCF-GLAQREILQIIIRLMPEIHCFSNPLVYAFT  302 (338)
T ss_pred             ------hhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcch-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Confidence                  24678999999999999999999999987755421     121 112234567888999999999999999999


Q ss_pred             cccccC
Q psy5093         657 SRDFRR  662 (662)
Q Consensus       657 ~~~fR~  662 (662)
                      +++||+
T Consensus       303 ~~~FR~  308 (338)
T PHA03234        303 GGDFRL  308 (338)
T ss_pred             hHHHHH
Confidence            999995

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.83  E-value=4.5e-19  Score=181.22  Aligned_cols=154  Identities=17%  Similarity=0.277  Sum_probs=111.0

Q ss_pred             ccceeeeehhhHHHHHHhhchhhhhhcccc--cC---CccCCCCceecC--Cc------hhHhhhhhHHHHHhHHHHHHH
Q psy5093         424 YPQYLVLISLCYYVTTLVLTAPAILWWRAV--RN---EEVPKNKCPFTD--SK------GYLIFSSTISFYLPLLVMVFT  490 (662)
Q Consensus       424 ~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~--~~---~~~~~~~C~~~~--~~------~y~~~~~~~~f~lP~~ii~~~  490 (662)
                      +++.+.+++++.|+.++++.+|+.+.....  .+   ...+...|....  +.      .|.+...++.|++|+++|++|
T Consensus       144 ~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~  223 (409)
T PHA03235        144 AYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWF  223 (409)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777788999999999999976543211  11   112345684321  11      244556667799999999999


Q ss_pred             HHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccc
Q psy5093         491 YFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIH  570 (662)
Q Consensus       491 Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (662)
                      |.+|+++++++.+                                                                   
T Consensus       224 Y~~I~~~l~~~~~-------------------------------------------------------------------  236 (409)
T PHA03235        224 YTFFYRTLKRASY-------------------------------------------------------------------  236 (409)
T ss_pred             HHHHHHHHHhhhh-------------------------------------------------------------------
Confidence            9999999886432                                                                   


Q ss_pred             ccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhc-----ccccCCcchhHHHHHHHHHHHHh
Q psy5093         571 KGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCT-----KCFWSEQDEELISAVVTWLGWIN  645 (662)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~n  645 (662)
                                       ++++|+.+++++++++|++||+||+++.++..+..     .+. .......+..++.+|+++|
T Consensus       237 -----------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~-~~~~~~~~~~i~~~La~~n  298 (409)
T PHA03235        237 -----------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCE-HINLRDAVSTLSRLVPNLH  298 (409)
T ss_pred             -----------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCch-hhhHHHHHHHHHHHHHHHH
Confidence                             12456778899999999999999999988865432     111 1123445677889999999


Q ss_pred             hhhhHHHHHhccccccC
Q psy5093         646 SGMNPVIYACWSRDFRR  662 (662)
Q Consensus       646 s~iNPiiY~~~~~~fR~  662 (662)
                      ||+||+||++++++||+
T Consensus       299 s~lNPiIY~~~~~~FRk  315 (409)
T PHA03235        299 CLLNPILYAFLGNDFLK  315 (409)
T ss_pred             HhHhHHHHHHhhHHHHH
Confidence            99999999999999995

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.83  E-value=2.8e-19  Score=179.59  Aligned_cols=278  Identities=21%  Similarity=0.217  Sum_probs=202.7

Q ss_pred             HHHHHHHHhhHhhhhheeccccccc-hhhHHHHHHHHHHHhhhhhcccHHHHHhhcc--cc--c----cccccchhHHHH
Q psy5093          60 LFSLVTVFGNALVMIAVVRERYLHT-STNYFIMSLALADCLVGLVVMPFSALYELLD--HN--W----IFGLNWCDSWRS  130 (662)
Q Consensus        60 ii~i~gl~gN~~vi~~i~~~~~lr~-~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~--~~--~----~~~~~~C~~~~~  130 (662)
                      ++.++|+++|++-++++.| |.+|+ +.|.+++++|++|++..+..++.........  ..  .    ........+...
T Consensus         5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~   83 (318)
T PF10324_consen    5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES   83 (318)
T ss_pred             EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence            3568999999999776655 67776 8999999999999999887776544333322  11  1    111122345577


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcCCCCC--CccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccC--CCCCCccc-
Q psy5093         131 LDVLFSTASILNLCVISLDRYWAITDPLTY--PSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNE--EVPKNKCP-  205 (662)
Q Consensus       131 ~~~~~~~~s~~~l~~iaidRy~~I~~P~~y--~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~--~~~~~~c~-  205 (662)
                      +...+...|.|..++||+.|++++.+|++.  +...+++.+..++.++++++.+...+..+........  -.+...|. 
T Consensus        84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~  163 (318)
T PF10324_consen   84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG  163 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence            888999999999999999999999999864  3456788888889999999999999888765544322  11233453 


Q ss_pred             cC---CCc-------------------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCcc
Q psy5093         206 FT---DSK-------------------GYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKE  263 (662)
Q Consensus       206 ~~---~~~-------------------~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~  263 (662)
                      ..   ...                   .+..+..++.-++|.++..+..+.+.+.+|+.+++.++..++.          
T Consensus       164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~----------  233 (318)
T PF10324_consen  164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK----------  233 (318)
T ss_pred             ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc----------
Confidence            10   000                   0112223344688999999999999999998777544322110          


Q ss_pred             ceeeeccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHH
Q psy5093         264 LTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMG  343 (662)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~  343 (662)
                                                                                      .+++.+.+++++.+++
T Consensus       234 ----------------------------------------------------------------~~~~~~tt~li~~~ti  249 (318)
T PF10324_consen  234 ----------------------------------------------------------------SKKSDRTTKLILFMTI  249 (318)
T ss_pred             ----------------------------------------------------------------cccccchHHHHHHHHH
Confidence                                                                            1156788999999999


Q ss_pred             HHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093         344 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI  412 (662)
Q Consensus       344 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~  412 (662)
                      .|+++.+|..+..++.....+..........+..+...+..+|+..|++||+.++.+||+++|++++++
T Consensus       250 ~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k  318 (318)
T PF10324_consen  250 SFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK  318 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence            999999999999999876443222234455677888899999999999999999999999999998763

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.79  E-value=3.6e-18  Score=171.08  Aligned_cols=151  Identities=19%  Similarity=0.396  Sum_probs=106.4

Q ss_pred             ceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecC---C-chh---HhhhhhHHHHHhHHHHHHHHHHHHHHH
Q psy5093         426 QYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTD---S-KGY---LIFSSTISFYLPLLVMVFTYFKIYRAA  498 (662)
Q Consensus       426 ~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~---~-~~y---~~~~~~~~f~lP~~ii~~~Y~~I~~~~  498 (662)
                      +...+++.+.|+.+++.++|+.+++....  ..+...|.+..   + .++   .....+..|++|+++|+++|.+|++.+
T Consensus       139 ~~~~~~i~~iWi~s~l~~~P~~~~~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l  216 (323)
T PHA02834        139 SLSVLLSVAAWVCSVILSMPAMVLYYVDN--TDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTL  216 (323)
T ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHhcc--CCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556678899999999999887654321  11234674321   1 112   223346789999999999999999988


Q ss_pred             HHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccccccccc
Q psy5093         499 VVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNF  578 (662)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (662)
                      +++.+                                                                           
T Consensus       217 ~~~~~---------------------------------------------------------------------------  221 (323)
T PHA02834        217 KNCKN---------------------------------------------------------------------------  221 (323)
T ss_pred             HhccC---------------------------------------------------------------------------
Confidence            76421                                                                           


Q ss_pred             chhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCC-----cchhHHHHHHHHHHHHhhhhhHHHH
Q psy5093         579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSE-----QDEELISAVVTWLGWINSGMNPVIY  653 (662)
Q Consensus       579 ~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~ns~iNPiiY  653 (662)
                               ++++|++|++++++++|++||+||++..++..+.+......     ........++.+++++|||+||+||
T Consensus       222 ---------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY  292 (323)
T PHA02834        222 ---------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIY  292 (323)
T ss_pred             ---------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence                     12457789999999999999999999998876543211000     1111234578899999999999999


Q ss_pred             HhccccccC
Q psy5093         654 ACWSRDFRR  662 (662)
Q Consensus       654 ~~~~~~fR~  662 (662)
                      ++++++||+
T Consensus       293 ~~~~~~fR~  301 (323)
T PHA02834        293 AFVGKNFKK  301 (323)
T ss_pred             HHhcHHHHH
Confidence            999999995

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.77  E-value=2.3e-17  Score=169.57  Aligned_cols=157  Identities=17%  Similarity=0.383  Sum_probs=111.4

Q ss_pred             ccccceeeeehhhHHHHHHhhchhhhhhccccc------CCc--cCCCCceecC--Cc--------hhHhhhhhHHHHHh
Q psy5093         422 CMYPQYLVLISLCYYVTTLVLTAPAILWWRAVR------NEE--VPKNKCPFTD--SK--------GYLIFSSTISFYLP  483 (662)
Q Consensus       422 ~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~------~~~--~~~~~C~~~~--~~--------~y~~~~~~~~f~lP  483 (662)
                      .++.+...++++..|+.++++++|+.+..+...      +.+  .....|....  +.        .+.+...+++|++|
T Consensus       206 ~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lP  285 (417)
T PHA02638        206 YRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIP  285 (417)
T ss_pred             eecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            344555667888999999999999988654321      111  1234673221  11        12333456778999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCccccc
Q psy5093         484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQV  563 (662)
Q Consensus       484 ~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (662)
                      +++|++||.+|++++++..+                                                            
T Consensus       286 l~vmi~cY~~I~~~L~~~~~------------------------------------------------------------  305 (417)
T PHA02638        286 IIIFAFCYIKIILKLKQLKK------------------------------------------------------------  305 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhc------------------------------------------------------------
Confidence            99999999999998865321                                                            


Q ss_pred             CCcccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhccccc---------CCcchhHH
Q psy5093         564 SNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW---------SEQDEELI  634 (662)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~---------~~~~~~~~  634 (662)
                                              ++++|++|++++++++|++||+||++..++..+......         .....+.+
T Consensus       306 ------------------------~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~  361 (417)
T PHA02638        306 ------------------------SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYA  361 (417)
T ss_pred             ------------------------cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHH
Confidence                                    135677899999999999999999999988765421000         01123455


Q ss_pred             HHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         635 SAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       635 ~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      ..++.+++++|||+||+||++.+++|||
T Consensus       362 ~~vt~~la~~~sclNPiIY~f~~~~FR~  389 (417)
T PHA02638        362 MMLAEAISLTHCCINPLIYTLIGENFRM  389 (417)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhCHHHHH
Confidence            6778899999999999999999999996

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.73  E-value=1.9e-16  Score=154.73  Aligned_cols=268  Identities=16%  Similarity=0.133  Sum_probs=186.9

Q ss_pred             HHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhcccccccccc-chhHHHHhhHHHHHH
Q psy5093          60 LFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLN-WCDSWRSLDVLFSTA  138 (662)
Q Consensus        60 ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~  138 (662)
                      ++.++|++.|.++++.+.+.+++|++.+.+..+.|++|.+.+++.+. +.......+.....+. .-.+.+.........
T Consensus         2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~-~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~   80 (274)
T PF10328_consen    2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLF-WVVPMTLLDISFLPSSLNSIIFGFIGMFCYFI   80 (274)
T ss_pred             eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccccCchHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999876443 3333222222222222 234457888888889


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccC---CCcchhhh
Q psy5093         139 SILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFT---DSKGYLIF  215 (662)
Q Consensus       139 s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~~  215 (662)
                      +.++.++||++|++||..|.+|++..+.+.+..++++.|++++....+..+..+.......+...-..+   .-..+...
T Consensus        81 ~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~~~  160 (274)
T PF10328_consen   81 GPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYSWY  160 (274)
T ss_pred             HHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhhhH
Confidence            999999999999999999999999999999999999999999977766655433221111111110101   11112222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccccc
Q psy5093         216 SSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMS  295 (662)
Q Consensus       216 ~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (662)
                      .......+-.+++.++++.+..++++.+++..                                                
T Consensus       161 ~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~------------------------------------------------  192 (274)
T PF10328_consen  161 FDFYKNFILVIISNILNIITFIKLRKFRKKIS------------------------------------------------  192 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------------------------------------------------
Confidence            23333444466777788888888888766531                                                


Q ss_pred             cCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHH
Q psy5093         296 GHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELI  375 (662)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~  375 (662)
                                             ......++++++|.+..+........|++.++-+.+...+.          +...+.
T Consensus       193 -----------------------~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~----------~~~~~~  239 (274)
T PF10328_consen  193 -----------------------VSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS----------SNRWWQ  239 (274)
T ss_pred             -----------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cccHHH
Confidence                                   01112334455899999999999999999887766664442          113334


Q ss_pred             HHHHHHHHHhhccccchhhhhcChhHHHHHHHhc
Q psy5093         376 SAVVTWLGWINSGMNPVIYACWSRDFRSKEKILN  409 (662)
Q Consensus       376 ~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~  409 (662)
                      +..+.....+.+++|++|+...|+|+|+.+++..
T Consensus       240 F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~  273 (274)
T PF10328_consen  240 FFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK  273 (274)
T ss_pred             HHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence            4455555677888999999999999999987654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.71  E-value=4.5e-16  Score=157.85  Aligned_cols=160  Identities=23%  Similarity=0.338  Sum_probs=114.0

Q ss_pred             cCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecCC---chh----HhhhhhHHHHHhHHHHHHH
Q psy5093         418 LLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDS---KGY----LIFSSTISFYLPLLVMVFT  490 (662)
Q Consensus       418 ~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~---~~y----~~~~~~~~f~lP~~ii~~~  490 (662)
                      .|...++.++..+++.++|+.+++..+|+...+....+.  +...|.....   ..+    .+...++.+++|+++++++
T Consensus       145 ~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~--~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~  222 (335)
T PHA03087        145 KSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDH--ETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYC  222 (335)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccC--CCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455567778888889999999999999988876554322  2345632221   111    1223456789999999999


Q ss_pred             HHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccc
Q psy5093         491 YFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIH  570 (662)
Q Consensus       491 Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (662)
                      |.+|++.++++.++                                                                  
T Consensus       223 y~~i~~~l~~~~~~------------------------------------------------------------------  236 (335)
T PHA03087        223 YSKILITLKGINKS------------------------------------------------------------------  236 (335)
T ss_pred             HHHHHHHHHhcccc------------------------------------------------------------------
Confidence            99998887654210                                                                  


Q ss_pred             ccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccC----CcchhHHHHHHHHHHHHhh
Q psy5093         571 KGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWS----EQDEELISAVVTWLGWINS  646 (662)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~l~~~ns  646 (662)
                                       ++++|++|++.+++++|++||+|+.+..++..+.......    .........++.+++.+||
T Consensus       237 -----------------~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns  299 (335)
T PHA03087        237 -----------------KKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHC  299 (335)
T ss_pred             -----------------hhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence                             2466889999999999999999999988776432110000    1122344567888999999


Q ss_pred             hhhHHHHHhccccccC
Q psy5093         647 GMNPVIYACWSRDFRR  662 (662)
Q Consensus       647 ~iNPiiY~~~~~~fR~  662 (662)
                      |+||+||++++++||+
T Consensus       300 ~~NPiIY~~~~~~fr~  315 (335)
T PHA03087        300 CINPLIYAFVSEFFNK  315 (335)
T ss_pred             hhhhhHHHHcCHHHHH
Confidence            9999999999999995

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.68  E-value=4.4e-15  Score=144.89  Aligned_cols=163  Identities=25%  Similarity=0.480  Sum_probs=125.8

Q ss_pred             cCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecCCc----hhHhhhhhHHHHHhHHHHHHHHHH
Q psy5093         418 LLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSK----GYLIFSSTISFYLPLLVMVFTYFK  493 (662)
Q Consensus       418 ~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~----~y~~~~~~~~f~lP~~ii~~~Y~~  493 (662)
                      .|+..++++....+++..|+.+++..+|+.+..............|......    .|.....+..+++|+++++++|.+
T Consensus        91 ~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  170 (257)
T PF00001_consen   91 RYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILPLIIILICYIR  170 (257)
T ss_dssp             THHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence            3445556777888899999999999999987754433222224568554432    477888888999999999999999


Q ss_pred             HHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCcccccccc
Q psy5093         494 IYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH  573 (662)
Q Consensus       494 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (662)
                      |++.++++.++......                                                               
T Consensus       171 i~~~~~~~~~~~~~~~~---------------------------------------------------------------  187 (257)
T PF00001_consen  171 ILRKLRRQRKRIKSQSS---------------------------------------------------------------  187 (257)
T ss_dssp             HHHHHHHHHHCTCCHTS---------------------------------------------------------------
T ss_pred             ccccccccccccccccc---------------------------------------------------------------
Confidence            99999998876432110                                                               


Q ss_pred             cccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHH
Q psy5093         574 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIY  653 (662)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY  653 (662)
                             ...+.+.++++|.++++++++++|++||+|+.+..++....+..  +. .......++.++.++||++||+||
T Consensus       188 -------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  188 -------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS--SL-ISSILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS--TC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------cccccccccccccccccccccccccccCCceeHHHHHHHHcCcc--ch-hhHHHHHHHHHHHHHHHhhCcEEC
Confidence                   12233446788999999999999999999999999998877643  11 577888999999999999999999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=99.65  E-value=4e-14  Score=138.88  Aligned_cols=285  Identities=12%  Similarity=0.111  Sum_probs=189.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHhhhhheeccc---cccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccch
Q psy5093          49 QQRTLLVSTLSLFSLVTVFGNALVMIAVVRER---YLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWC  125 (662)
Q Consensus        49 ~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~---~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C  125 (662)
                      ..+.+..++..+..++|++||++++++...+.   +.-++.+..+.+||+++++...+... ..............+..+
T Consensus         4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~-~~~~~~~~~~~~~~~~~~   82 (303)
T PF05296_consen    4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILL-NSFLSFFFPNIYFSENVY   82 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcchhhhhhhHH
Confidence            34567788889999999999999988876432   22359999999999999998665443 233333333444466678


Q ss_pred             hHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC-Cccccc---hhhhHHHHHHHHHHHhhhhhHHHhhhcccc----C
Q psy5093         126 DSWRSLDVLFSTASILNLCVISLDRYWAITDPLTY-PSRMST---RRAYIWIAIVWICSGGISFPAILWWRAVRN----E  197 (662)
Q Consensus       126 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y-~~~~t~---~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~----~  197 (662)
                      +...++..+....|.|..+++++.-++.|+...+. -.++++   +.+..++.+.++++++..++....+.....    .
T Consensus        83 ~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~  162 (303)
T PF05296_consen   83 KIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTN  162 (303)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccccc
Confidence            89999999999999999999999999999875321 111121   223345566667777333333333322111    1


Q ss_pred             CCCCCccccCCCcc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCC
Q psy5093         198 EVPKNKCPFTDSKG---YLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTD  274 (662)
Q Consensus       198 ~~~~~~c~~~~~~~---~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (662)
                      ...+..........   +......+..++|+++++++...+...++||.|+++.......+.                  
T Consensus       163 ~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~p------------------  224 (303)
T PF05296_consen  163 NSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDP------------------  224 (303)
T ss_pred             CCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC------------------
Confidence            11111111111111   222233478889999999999999999999999887543322111                  


Q ss_pred             CCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHH
Q psy5093         275 HRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFV  354 (662)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i  354 (662)
                                                                          +.+++.|++|++....+.|+++++-..+
T Consensus       225 ----------------------------------------------------s~~aH~~a~k~~~sfl~ly~~~~~~~~~  252 (303)
T PF05296_consen  225 ----------------------------------------------------STEAHIRAIKTMISFLILYIIYFLSLIL  252 (303)
T ss_pred             ----------------------------------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                1128899999999888888776654333


Q ss_pred             HHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093         355 VNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI  412 (662)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~  412 (662)
                      ...-...        ........+...+..+.+..+|+|..+.|+++|+++++++++.
T Consensus       253 ~~~~~~~--------~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~  302 (303)
T PF05296_consen  253 SFLSFFF--------PENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCL  302 (303)
T ss_pred             HHHHHHh--------ccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence            2222211        1133455778889999999999999999999999999988765

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.58  E-value=1.9e-14  Score=140.14  Aligned_cols=270  Identities=16%  Similarity=0.167  Sum_probs=175.0

Q ss_pred             HHHHHHhhHhhhhheecccc----ccchhhHHHHHHHHHHHhhhhhcccHHHHHhh--ccc-cccccccchhHHHHhhHH
Q psy5093          62 SLVTVFGNALVMIAVVRERY----LHTSTNYFIMSLALADCLVGLVVMPFSALYEL--LDH-NWIFGLNWCDSWRSLDVL  134 (662)
Q Consensus        62 ~i~gl~gN~~vi~~i~~~~~----lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~--~~~-~~~~~~~~C~~~~~~~~~  134 (662)
                      +++.++-.+.+++++.+.|+    .+++.+.++++-+++|++..+...........  ..+ -...++..-++.......
T Consensus         5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~   84 (283)
T PF10323_consen    5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY   84 (283)
T ss_pred             EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence            34566677777777766554    45899999999999999996654432222221  000 011233335566666777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCC-CCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCcchh
Q psy5093         135 FSTASILNLCVISLDRYWAITDPL-TYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYL  213 (662)
Q Consensus       135 ~~~~s~~~l~~iaidRy~~I~~P~-~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  213 (662)
                      .........+++|++||.+|++|. ++.+..++.+.+.++++-|+.+++.++|.+...............-.........
T Consensus        85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~~~~~d~~~~~~~  164 (283)
T PF10323_consen   85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENMSLFVDPEFIQRN  164 (283)
T ss_pred             HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccceeeecCHHHHHHH
Confidence            777888899999999999999999 8888889999999999999999999999655433322222111111111111122


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccc
Q psy5093         214 IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNV  293 (662)
Q Consensus       214 ~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (662)
                      .........+.++..+++|+.+...+||+.|...                                              
T Consensus       165 ~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s----------------------------------------------  198 (283)
T PF10323_consen  165 FLIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKS----------------------------------------------  198 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------------------------------------------
Confidence            2334455566788999999999999997764110                                              


Q ss_pred             cccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhH
Q psy5093         294 MSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEE  373 (662)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~  373 (662)
                                                  ++.+++.++|.+.+.+..++..++++...=+ +...+.....    +.+...
T Consensus       199 ----------------------------~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~~----~~~~~~  245 (283)
T PF10323_consen  199 ----------------------------KSSSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQNF----NTDPIF  245 (283)
T ss_pred             ----------------------------HhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc----cchHHH
Confidence                                        1112334488888888877777665544333 3333222211    111122


Q ss_pred             HHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcc
Q psy5093         374 LISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNH  410 (662)
Q Consensus       374 ~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~  410 (662)
                      ....+...+..+.+.+||+...+.|+++||++++..+
T Consensus       246 ~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~  282 (283)
T PF10323_consen  246 YLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLK  282 (283)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcC
Confidence            3334677788899999999999999999999877654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=99.56  E-value=7.4e-13  Score=127.99  Aligned_cols=259  Identities=15%  Similarity=0.143  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHh
Q psy5093          52 TLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSL  131 (662)
Q Consensus        52 ~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~  131 (662)
                      ....++..+..+++++|-+++++.+...|++|++.+-++.-++++|++..+..+...    . ..+...++..|++++++
T Consensus         7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~-~~~~~~~s~lC~~Qafl   81 (303)
T PF05462_consen    7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----L-SPSAGENSFLCQFQAFL   81 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----h-cccCCCCCcchhhHhHH
Confidence            345566677789999999999999999999999999999999999999876543211    1 12223457789999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCcc
Q psy5093         132 DVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKG  211 (662)
Q Consensus       132 ~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  211 (662)
                      ..++..++.+..++||++=|+.+.+...    -.++.-....+++|.++++.++.++...    ..+.....|.......
T Consensus        82 iq~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~----~~g~~G~WCWI~~~~~  153 (303)
T PF05462_consen   82 IQFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGN----DYGPAGNWCWIKPEWD  153 (303)
T ss_pred             HHHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCCCCCceeecCCCc
Confidence            9999999999999999999999886422    2355556788889999999888766432    2233345786654422


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCcccc
Q psy5093         212 YLIFSSTISFYLPLLVMVFTYFK-IYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEM  290 (662)
Q Consensus       212 ~~~~~~~~~~~ip~~ii~~~y~~-I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (662)
                      .   .-...+.+|+.+++..... +....+...+..+...                                        
T Consensus       154 ~---~r~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~~~----------------------------------------  190 (303)
T PF05462_consen  154 V---WRFALFYIPLWIIIIISAILVGITMRYIYRVIRNGV----------------------------------------  190 (303)
T ss_pred             c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----------------------------------------
Confidence            1   1123344554332222211 1111111111111000                                        


Q ss_pred             ccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCc
Q psy5093         291 DNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ  370 (662)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~  370 (662)
                                                     +.+   .+++.+....+..=.++|++||+|..+..+....+.       
T Consensus       191 -------------------------------sd~---~~~~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~~~-------  229 (303)
T PF05462_consen  191 -------------------------------SDN---KDKHLKYQLKLVNYPLIFIICWIFATINRIYNFIGK-------  229 (303)
T ss_pred             -------------------------------chh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence                                           000   002223333355688899999999999999887632       


Q ss_pred             hhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHH
Q psy5093         371 DEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKI  407 (662)
Q Consensus       371 ~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~  407 (662)
                      .+.++..+-..+..+...+|.++|++.++-.+|-+..
T Consensus       230 ~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~  266 (303)
T PF05462_consen  230 NPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGS  266 (303)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            2345556666778889999999999999988888543

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=99.51  E-value=7.1e-13  Score=128.95  Aligned_cols=273  Identities=12%  Similarity=0.133  Sum_probs=177.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchh-
Q psy5093          48 AQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCD-  126 (662)
Q Consensus        48 ~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~-  126 (662)
                      ...+.+.++.+.+.+++-.+..+.++.++.+++..|.+.+-++.-||+.|++...+....+-. ....     |...|. 
T Consensus        29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~-l~i~-----G~vfC~~  102 (313)
T PF10321_consen   29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGI-LAIF-----GAVFCSY  102 (313)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhH-HHhc-----CccccCC
Confidence            566788899999999999999999999998888778899999999999999996543221111 1112     333344 


Q ss_pred             -----HHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHH--HhhhhhHHHhhhccccCCC
Q psy5093         127 -----SWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICS--GGISFPAILWWRAVRNEEV  199 (662)
Q Consensus       127 -----~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s--~~~~~~~~~~~~~~~~~~~  199 (662)
                           +.+.+....-..+......+|++|..-+..|......+..++..+.+.+..+.+  ..+..++..+...+..-.-
T Consensus       103 P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw~f  182 (313)
T PF10321_consen  103 PRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSWFF  182 (313)
T ss_pred             chHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceEec
Confidence                 445555666677888889999999999999877666666666554444333222  2222333332211110000


Q ss_pred             CCCccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCc
Q psy5093         200 PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMT  279 (662)
Q Consensus       200 ~~~~c~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (662)
                      ++..-+....+.|.-....+..++-.+.+.++|+.+...++++.+....                               
T Consensus       183 DP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s-------------------------------  231 (313)
T PF10321_consen  183 DPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTS-------------------------------  231 (313)
T ss_pred             CccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------------------------------
Confidence            0000011122234434444445555778889999999999887553210                               


Q ss_pred             cCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy5093         280 LHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLS  359 (662)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~  359 (662)
                                                                   ....+.+++......++.+.+.+.++-|.....+ 
T Consensus       232 ---------------------------------------------~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~-  265 (313)
T PF10321_consen  232 ---------------------------------------------SQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQFF-  265 (313)
T ss_pred             ---------------------------------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeeee-
Confidence                                                         1122367788888888877777665444322221 


Q ss_pred             HhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093         360 AVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS  413 (662)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~  413 (662)
                                ..+.++..+.....-+++..+|+||...|+..|++++++++..+
T Consensus       266 ----------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~  309 (313)
T PF10321_consen  266 ----------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKK  309 (313)
T ss_pred             ----------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccc
Confidence                      23667888889999999999999999999999999776665433

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.12  E-value=3.1e-10  Score=106.58  Aligned_cols=243  Identities=13%  Similarity=0.088  Sum_probs=160.7

Q ss_pred             cchhhHHHHHHHHHHHhhhhh-cccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCC--C
Q psy5093          83 HTSTNYFIMSLALADCLVGLV-VMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPL--T  159 (662)
Q Consensus        83 r~~~~~ll~~Lai~Dll~~l~-~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~--~  159 (662)
                      .+|.+..+.+||+++++..+. .+| ...... ... .+++.+||+..|+..+.-..|+.+.+++++.+.+.|.-..  +
T Consensus         8 ~kp~dlIl~hLa~aN~lvLl~rGip-~~~~~~-~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w   84 (265)
T PF03402_consen    8 LKPIDLILIHLALANILVLLSRGIP-QTMAFF-GWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRW   84 (265)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhHH-HHHHHh-hcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchh
Confidence            579999999999999988543 344 222222 222 3589999999999999999999999999997777776322  1


Q ss_pred             -CCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcccc-----CCCCCCccccCCCcch----hhhhHHHHHHHHHHHHH
Q psy5093         160 -YPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN-----EEVPKNKCPFTDSKGY----LIFSSTISFYLPLLVMV  229 (662)
Q Consensus       160 -y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-----~~~~~~~c~~~~~~~~----~~~~~~~~~~ip~~ii~  229 (662)
                       .-+...++.+...+...|++.+++.....+.......     .......|........    ......+-=++.+.+|+
T Consensus        85 ~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~  164 (265)
T PF03402_consen   85 AELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMI  164 (265)
T ss_pred             hhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHH
Confidence             1122345566677888899888776543332211111     1112345643222111    11122222355677888


Q ss_pred             HHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccccccCCCcccccccccc
Q psy5093         230 FTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRI  309 (662)
Q Consensus       230 ~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (662)
                      ...+.+...+.||+++.+.-+....+.+.+                                                  
T Consensus       165 ~aSgyMV~~L~RH~q~VqhIhs~~~s~r~S--------------------------------------------------  194 (265)
T PF03402_consen  165 WASGYMVFLLYRHHQQVQHIHSSSLSPRSS--------------------------------------------------  194 (265)
T ss_pred             hhhhhheeeeeecccccccCcCCCCCCCCC--------------------------------------------------
Confidence            888999999999988766543332222111                                                  


Q ss_pred             ccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccc
Q psy5093         310 IHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM  389 (662)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~  389 (662)
                                          .|.|+++++++++..|+..+..-.++..+.....      + ..++..+..++....+.+
T Consensus       195 --------------------pE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~------~-~~~~~~~~~~ls~cfpti  247 (265)
T PF03402_consen  195 --------------------PETRATKTILLLVSTFVSFYGLSSILFIYLTSFK------N-SPWLLNISVFLSSCFPTI  247 (265)
T ss_pred             --------------------hhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhc------C-CcceeEHHHHHhHHhHhh
Confidence                                7999999999999999999888777655443321      1 223345677889999999


Q ss_pred             cchhhhhcChhHHHHH
Q psy5093         390 NPVIYACWSRDFRSKE  405 (662)
Q Consensus       390 nP~IY~~~~~~fR~~~  405 (662)
                      .|++....+++..+-+
T Consensus       248 sPfvLI~~d~~i~~~~  263 (265)
T PF03402_consen  248 SPFVLISSDKRIIKFL  263 (265)
T ss_pred             ChHHhhccCchHHHHh
Confidence            9999999999887654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.11  E-value=9.9e-09  Score=101.17  Aligned_cols=263  Identities=14%  Similarity=0.171  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHhhHhhhhheecc-ccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccc----------cccccccc
Q psy5093          56 STLSLFSLVTVFGNALVMIAVVRE-RYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDH----------NWIFGLNW  124 (662)
Q Consensus        56 ~~~~ii~i~gl~gN~~vi~~i~~~-~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~----------~~~~~~~~  124 (662)
                      ++..+.+++|++.|+++++.+.++ ++.-+...+++.|-|+.|++.++.... ........+          ...+|+..
T Consensus         3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~-~q~R~i~~~~~~~~~~~GpC~~~~~~~   81 (292)
T PF10317_consen    3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFL-TQPRIIPNGTSIAVISYGPCRYFGPWF   81 (292)
T ss_pred             EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCCCCcEEEEeeecceecCcHH
Confidence            356788999999999998877655 444467889999999999999765432 222222111          12346777


Q ss_pred             hhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccc--------c
Q psy5093         125 CDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVR--------N  196 (662)
Q Consensus       125 C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~--------~  196 (662)
                      |.....+...+...+.+.+.+--..||..+.++..     ++++....+++.+..++...+...+......        .
T Consensus        82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~  156 (292)
T PF10317_consen   82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQF  156 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHh
Confidence            88888888888899999999999999999997532     6677777777888877777665444322110        0


Q ss_pred             CCC----CCCccccCCCcchhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeee
Q psy5093         197 EEV----PKNKCPFTDSKGYLIFSSTISFYLPLL----VMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRI  268 (662)
Q Consensus       197 ~~~----~~~~c~~~~~~~~~~~~~~~~~~ip~~----ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (662)
                      .+.    +...-+..+..........+...++..    ++.++--+|.+.++++..++.                     
T Consensus       157 ~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~S---------------------  215 (292)
T PF10317_consen  157 HPEYNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSMS---------------------  215 (292)
T ss_pred             CcccccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcC---------------------
Confidence            000    000001111111111112222222222    222222333333333211111                     


Q ss_pred             ccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhh
Q psy5093         269 HRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVC  348 (662)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~  348 (662)
                                                                              ++.++.+++.+|.+.+-++.=+++
T Consensus       216 --------------------------------------------------------~~tk~~h~~lv~~Lt~Q~~lP~~~  239 (292)
T PF10317_consen  216 --------------------------------------------------------ERTKSMHRQLVKGLTIQALLPLFF  239 (292)
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHHHHHHhHHHH
Confidence                                                                    122337888999999999988889


Q ss_pred             hhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHH
Q psy5093         349 WLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKI  407 (662)
Q Consensus       349 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~  407 (662)
                      ..|.....++....      .........+...+..+-+.+||++....-+.||++++|
T Consensus       240 ~~p~~~~~~~~~~~------~~~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r  292 (292)
T PF10317_consen  240 YIPGVIIYFLSQFT------GYEHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR  292 (292)
T ss_pred             HHHHHHHHHHHHHh------ccccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence            99888877776663      333566777888889999999999999999999999764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>KOG2087|consensus

Probab=98.90  E-value=3.1e-11  Score=114.65  Aligned_cols=150  Identities=19%  Similarity=0.284  Sum_probs=103.5

Q ss_pred             ccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCce-----ecCCchhHhhhhhHHHHHhHHHHHHHHHHHHHHH
Q psy5093         424 YPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCP-----FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAA  498 (662)
Q Consensus       424 ~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~-----~~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~  498 (662)
                      +.+...++++..|+.+++.++.|+++.+.+.    ....|.     ...+..|.+..++..-.+-+++|.++|.+|+..+
T Consensus       144 ~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~----~~~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l  219 (363)
T KOG2087|consen  144 KLRPLVLILLLGWLFAFLMALLPLFGISSYG----ASSVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSL  219 (363)
T ss_pred             cccHHHHHHHHHHHHHHHHHhccccCCCCCc----ccceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheee
Confidence            4455788899999999999998888744432    335782     2223336666667777889999999999999887


Q ss_pred             HHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccccccccc
Q psy5093         499 VVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNF  578 (662)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (662)
                      ++......                                                                        
T Consensus       220 ~~~~~~~~------------------------------------------------------------------------  227 (363)
T KOG2087|consen  220 RKGDLSAT------------------------------------------------------------------------  227 (363)
T ss_pred             ecCCCccc------------------------------------------------------------------------
Confidence            65322110                                                                        


Q ss_pred             chhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccc
Q psy5093         579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSR  658 (662)
Q Consensus       579 ~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~  658 (662)
                               ....+.+|-+..++.+-++||.|..+..+...+.....    .....-.+...+.-.|||+||++|+++++
T Consensus       228 ---------~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li----~~~~sk~llv~flPlns~~NP~LYa~fT~  294 (363)
T KOG2087|consen  228 ---------LISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELI----SVSYSKWLLVFFLPLNSCLNPFLYAFFTP  294 (363)
T ss_pred             ---------cchhhhhhCeeEEEEccccccCchheeeeHHhcCCccc----ChhhceeEEEEEEEcccccCchhHHHcCH
Confidence                     01125667778888899999999999998877653211    11111112223445799999999999999


Q ss_pred             cccC
Q psy5093         659 DFRR  662 (662)
Q Consensus       659 ~fR~  662 (662)
                      .||+
T Consensus       295 ~fk~  298 (363)
T KOG2087|consen  295 VFKE  298 (363)
T ss_pred             HHHH
Confidence            9985

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.83  E-value=9.7e-08  Score=87.20  Aligned_cols=161  Identities=12%  Similarity=0.098  Sum_probs=105.5

Q ss_pred             ccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy5093          80 RYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLT  159 (662)
Q Consensus        80 ~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~  159 (662)
                      +++|.-.+.+++||.++|++-++..+...+.... ++.-..+...|..++++..+...++.+.+.+||++=|+.|.+|-.
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~-~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~  108 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLA-RGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNW  108 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            3445666779999999999998765442333332 333344677899999999999999999999999999999999822


Q ss_pred             CCc---c------ccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCc-chhhhhHHHHHHHHHHHHH
Q psy5093         160 YPS---R------MSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSK-GYLIFSSTISFYLPLLVMV  229 (662)
Q Consensus       160 y~~---~------~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~~~~~ip~~ii~  229 (662)
                      .++   .      ..+..+..+..+.|++   .+...++.. ...........|....+. .+.....-+...+-.+.++
T Consensus       109 ~~~~~~~~~~gl~~~~~~v~~~~~~~~~~---~~~la~i~~-~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i  184 (201)
T PF11710_consen  109 KRKRSKNVEGGLYPYRYWVWVIWILVPLL---LASLAFIGL-GGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAII  184 (201)
T ss_pred             ccccccccccceEEeeeeeehHHHHHHHH---HHHHHHhcc-ccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHH
Confidence            111   0      1112222233334443   333333321 122334456788665543 3555556666666788999


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy5093         230 FTYFKIYRAAVVQTKS  245 (662)
Q Consensus       230 ~~y~~I~~~l~~~~~~  245 (662)
                      +.|+.|+..+||+.|+
T Consensus       185 ~iY~~if~~lrr~~~~  200 (201)
T PF11710_consen  185 IIYIAIFFYLRRRIRR  200 (201)
T ss_pred             HHHHHHHHHHhhhhcc
Confidence            9999999999998764

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>KOG4193|consensus

Probab=98.68  E-value=8.3e-07  Score=93.97  Aligned_cols=263  Identities=10%  Similarity=0.064  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccc-ccc-chhHH
Q psy5093          51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIF-GLN-WCDSW  128 (662)
Q Consensus        51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~-~~~-~C~~~  128 (662)
                      ..+..++--+-+++++++=.+.++++.--|++++-.+...++|+++=++.-++++         -+.|.. ... .|...
T Consensus       319 ~~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~fL---------~~~~~~~~~~~~C~~~  389 (610)
T KOG4193|consen  319 TLLLDILSTVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELLFL---------LGIDRTSTSVVLCIAA  389 (610)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh---------cccccccCcccccHHH
Confidence            3344444455556666666666666666666666557788888887333222111         122221 223 79999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCC
Q psy5093         129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTD  208 (662)
Q Consensus       129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~  208 (662)
                      +++..++..+..+.+.++++.-|..++.   ..+....++........|..++++...........+........|....
T Consensus       390 a~llhff~LaaF~Wm~leg~hl~~~~v~---vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~  466 (610)
T KOG4193|consen  390 AILLHFFFLAAFFWMLLEGFHLYLLLVE---VFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDT  466 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEec
Confidence            9999999999999999999999996554   2333455555555568999888776665554333322233334476665


Q ss_pred             CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCcc
Q psy5093         209 SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDV  288 (662)
Q Consensus       209 ~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (662)
                      .....+.     |+.|+.+++.+++.++...-.+-.+.......                                    
T Consensus       467 ~~~~~~~-----F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~------------------------------------  505 (610)
T KOG4193|consen  467 QNGFIWS-----FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQP------------------------------------  505 (610)
T ss_pred             CCceEEE-----EehHHHHHHHHHHHHHHHHHHHHhhcccccCc------------------------------------
Confidence            5544443     66777777777755544333322211100000                                    


Q ss_pred             ccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCC
Q psy5093         289 EMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWS  368 (662)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~  368 (662)
                                                          ..+..+..+..+..++++.++-+.|.--+....           
T Consensus       506 ------------------------------------~~~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~-----------  538 (610)
T KOG4193|consen  506 ------------------------------------IASKLENISLIRSALALLFLLGLTWIFGIFSWL-----------  538 (610)
T ss_pred             ------------------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence                                                000002226677777788888888864322221           


Q ss_pred             CchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093         369 EQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS  413 (662)
Q Consensus       369 ~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~  413 (662)
                      ......+.++..++..+..++-.+.|++++++.|++.++.+|+.+
T Consensus       539 ~~~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~  583 (610)
T KOG4193|consen  539 PGTSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGR  583 (610)
T ss_pred             cccchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccC
Confidence            113455667777788888888899999999999999888877443

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.60  E-value=4e-06  Score=82.64  Aligned_cols=264  Identities=14%  Similarity=0.158  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhheec-cccccchhhHHH----HHHHHHHHhhhhhcccHHHHHhhccccccccccchh-
Q psy5093          53 LLVSTLSLFSLVTVFGNALVMIAVVR-ERYLHTSTNYFI----MSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCD-  126 (662)
Q Consensus        53 i~~~~~~ii~i~gl~gN~~vi~~i~~-~~~lr~~~~~ll----~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~-  126 (662)
                      ++...+-++++++++.|.+.++.+.. .+++.+ ..+++    +...++|+-.+.+.-|+.+....  +.+..| ..|+ 
T Consensus        10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~-fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~--agy~~G-~l~~~   85 (303)
T PF10327_consen   10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDN-FRYYLLYFQISCTLTDIHLTFLMQPIPLFPIP--AGYCVG-FLARY   85 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeEEEecCCccc-hhhHHHHHHHHHHHhhhhhhhhccchhhccee--EEEEEe-ehhhc
Confidence            45677888899999999999887664 455544 32233    34568899888888886555433  222222 2233 


Q ss_pred             ------HHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccc----c
Q psy5093         127 ------SWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVR----N  196 (662)
Q Consensus       127 ------~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~----~  196 (662)
                            ....+..+......-.++.--+-|..+|.+..+.+ ..++..-........+..+.............+    .
T Consensus        86 f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~y  164 (303)
T PF10327_consen   86 FGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKH-VLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEY  164 (303)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence                  33344444444455555666678999999876532 234444334444444444444332221111100    0


Q ss_pred             CCCCCCcc--cc---------CCCcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCcc
Q psy5093         197 EEVPKNKC--PF---------TDSKGY--LIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKE  263 (662)
Q Consensus       197 ~~~~~~~c--~~---------~~~~~~--~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~  263 (662)
                      -......|  .+         +.+..+  ......++..+..++..+++..+++.+++.+++..+               
T Consensus       165 I~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~---------------  229 (303)
T PF10327_consen  165 IRENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISK---------------  229 (303)
T ss_pred             HHhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH---------------
Confidence            00111111  11         111111  122233445556777888888999888887765432               


Q ss_pred             ceeeeccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHH
Q psy5093         264 LTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMG  343 (662)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~  343 (662)
                                                                                    +..++++++.+.+.+-.+
T Consensus       230 --------------------------------------------------------------~ty~kHk~av~SLi~Q~~  247 (303)
T PF10327_consen  230 --------------------------------------------------------------QTYQKHKEAVRSLIAQFA  247 (303)
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
Confidence                                                                          234488999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHH
Q psy5093         344 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSK  404 (662)
Q Consensus       344 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~  404 (662)
                      +-.+|-+|..+...+....      ......+.........++|.+|-++..+.++.||+-
T Consensus       248 ~~~i~~~P~~~~~~~~~~~------~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f  302 (303)
T PF10327_consen  248 TSSICILPPFIFVVVVIFE------FEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF  302 (303)
T ss_pred             HHHHHHHHHHHhhhhheec------CCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence            9999999998887765542      333556677888888999999999999999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.60  E-value=2.5e-05  Score=78.20  Aligned_cols=110  Identities=9%  Similarity=-0.004  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHH---HHhhc---cccccccccchhH
Q psy5093          54 LVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSA---LYELL---DHNWIFGLNWCDS  127 (662)
Q Consensus        54 ~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~---~~~~~---~~~~~~~~~~C~~  127 (662)
                      ...+-.+++++|++.++..+..+..++..|.-..+++....++.++.++..+....   ..+..   +.+...+...|-+
T Consensus        19 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~   98 (324)
T PF10292_consen   19 SLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFI   98 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHH
Confidence            44456777788888888888888888888888888899899999888764333222   11211   2233345667988


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcc
Q psy5093         128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSR  163 (662)
Q Consensus       128 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~  163 (662)
                      ......++......+..++++||++|-.+.-+|.+.
T Consensus        99 lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~  134 (324)
T PF10292_consen   99 LRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS  134 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC
Confidence            899999999999999999999999999998888654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.55  E-value=2.3e-06  Score=84.11  Aligned_cols=183  Identities=13%  Similarity=0.144  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhhHhhhhheecccc--c-cchhhHHHHHHHHHHHhhhhhcccHHHHHhhccc------c-ccccccchhHH
Q psy5093          59 SLFSLVTVFGNALVMIAVVRERY--L-HTSTNYFIMSLALADCLVGLVVMPFSALYELLDH------N-WIFGLNWCDSW  128 (662)
Q Consensus        59 ~ii~i~gl~gN~~vi~~i~~~~~--l-r~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~------~-~~~~~~~C~~~  128 (662)
                      .+-++.|++.+..+++++.++++  . +++.+.+...=++.|++.-+...+..=.......      . ....+...++.
T Consensus         5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~   84 (275)
T PF02118_consen    5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIF   84 (275)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHH
Confidence            45567788888888888887776  3 6677777777777777764433221000000000      0 11234557777


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcccc-C
Q psy5093         129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPF-T  207 (662)
Q Consensus       129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~-~  207 (662)
                      .++...+..+.....+.++++|+-++..|.++++..++.. ..+++++.++++....+... ...+.....+...-.. +
T Consensus        85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~  162 (275)
T PF02118_consen   85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFI-SPTYVVYDNGGFSYSYND  162 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHc-cccEEEEECCceEEEEEe
Confidence            8888889999999999999999999999999877666433 34555555555544443333 2222111111111111 1


Q ss_pred             C-CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5093         208 D-SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT  243 (662)
Q Consensus       208 ~-~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~  243 (662)
                      . ............+++..++.++++....+++++.+
T Consensus       163 ~~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~  199 (275)
T PF02118_consen  163 TVSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS  199 (275)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1 11112222334444455566667777777776544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=98.53  E-value=1.2e-05  Score=77.47  Aligned_cols=142  Identities=18%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHHhhhhhcccHHHHHhhccccc----------cccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcC
Q psy5093          87 NYFIMSLALADCLVGLVVMPFSALYELLDHNW----------IFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITD  156 (662)
Q Consensus        87 ~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~----------~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~  156 (662)
                      .-.+..||++|++.++-.+.-...+.......          ......|-.......+++.++.|.+.+-|+|-|+.+.+
T Consensus        68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~  147 (405)
T PF02101_consen   68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR  147 (405)
T ss_pred             chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence            46888999999999775443333332221111          01235688888777889999999999999999998865


Q ss_pred             CCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5093         157 PLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIY  236 (662)
Q Consensus       157 P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~  236 (662)
                      .-      .+.....--.++|..+.++..--....  +.  + ....|.....   ..+-..+...+|++++.+.+=.++
T Consensus       148 ~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~L--y~--P-s~~~Ce~~l~---~alphYvttY~PlllVlvaNPiLy  213 (405)
T PF02101_consen  148 SA------GRSTIWLYHMMAWGLPALLCAEGLAML--YY--P-SISRCESGLE---HALPHYVTTYIPLLLVLVANPILY  213 (405)
T ss_pred             cC------CCcchhHHHHHHHHHHHHHHHhcccee--ec--C-CHHhhhhhhh---hcchhHHHHHHHHHHHHHhccHHH
Confidence            21      122334566778888877665433321  11  1 1124543221   233444555667777777766666


Q ss_pred             HHHHHH
Q psy5093         237 RAAVVQ  242 (662)
Q Consensus       237 ~~l~~~  242 (662)
                      ++.-+.
T Consensus       214 ~~a~~~  219 (405)
T PF02101_consen  214 IKAVRA  219 (405)
T ss_pred             HHHHHH
Confidence            555443

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.46  E-value=2.1e-06  Score=86.34  Aligned_cols=174  Identities=16%  Similarity=0.201  Sum_probs=119.6

Q ss_pred             ccccCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCC--ccCCCCce-ec---CCc-------------------
Q psy5093         415 VVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNE--EVPKNKCP-FT---DSK-------------------  469 (662)
Q Consensus       415 ~~~~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~--~~~~~~C~-~~---~~~-------------------  469 (662)
                      .+...+...+++....++.+.++.+.+...+..+.....+..  ..+...|. ++   ...                   
T Consensus       111 ~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~  190 (318)
T PF10324_consen  111 MSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTFPRYMLNISELFTENDCLFFR  190 (318)
T ss_pred             ccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccccccchhhhhhhhhhHHHHHH
Confidence            334445556678888888888888888888887766554322  12334573 11   111                   


Q ss_pred             hhHhhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccc
Q psy5093         470 GYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEM  549 (662)
Q Consensus       470 ~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (662)
                      .|.....++.-++|.++..+..+.+.+.+||..++.+...+.                                      
T Consensus       191 ~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~--------------------------------------  232 (318)
T PF10324_consen  191 IYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSS--------------------------------------  232 (318)
T ss_pred             HHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccccc--------------------------------------
Confidence            122222333467899999999999998888766554322100                                      


Q ss_pred             cccccCCCCcccccCCcccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCc
Q psy5093         550 DNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ  629 (662)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~  629 (662)
                                                          ...++.|.++++..+++.|+++=+|..+..++..+.++......
T Consensus       233 ------------------------------------~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~  276 (318)
T PF10324_consen  233 ------------------------------------KSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIF  276 (318)
T ss_pred             ------------------------------------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence                                                01245678999999999999999999999999886443111223


Q ss_pred             chhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         630 DEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       630 ~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      .......+...|..+|+..|++||.+++.+||+
T Consensus       277 ~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~  309 (318)
T PF10324_consen  277 IIIQLSIIFNILITINSSIHFFICCFMSSQYRK  309 (318)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHH
Confidence            345667788889999999999999999999995

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.33  E-value=1.3e-07  Score=94.51  Aligned_cols=263  Identities=15%  Similarity=0.205  Sum_probs=152.4

Q ss_pred             HHHHHHHHHhhHhhhhheecc-ccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhc---------cccccccccchhHH
Q psy5093          59 SLFSLVTVFGNALVMIAVVRE-RYLHTSTNYFIMSLALADCLVGLVVMPFSALYELL---------DHNWIFGLNWCDSW  128 (662)
Q Consensus        59 ~ii~i~gl~gN~~vi~~i~~~-~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~---------~~~~~~~~~~C~~~  128 (662)
                      -+..+++++.|++.++.+.++ ++.-.....++...|+.|++.+++-....-.....         .+.+..+....+..
T Consensus         6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (307)
T PF10326_consen    6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence            456788999999998887654 33334566788888999998877644322211111         12223344456666


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcc------------cc
Q psy5093         129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAV------------RN  196 (662)
Q Consensus       129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~------------~~  196 (662)
                      ..+...+...+...++.-=+.||.++++|.+- +....++..+.++..-+.++.......+.....            +.
T Consensus        86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l-~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~  164 (307)
T PF10326_consen   86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL-RYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLEN  164 (307)
T ss_pred             hhhhhhhHHHHHHHHHhHhhhheeeeccchhh-ccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccc
Confidence            66777777777888888888999999999753 344444443332222222222222111111110            00


Q ss_pred             CCCCCCcc----------ccCC------CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCC
Q psy5093         197 EEVPKNKC----------PFTD------SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSG  260 (662)
Q Consensus       197 ~~~~~~~c----------~~~~------~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~  260 (662)
                      .+.+....          +.+.      ..............+.+.++++|-.++++++++..+...             
T Consensus       165 y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~S-------------  231 (307)
T PF10326_consen  165 YGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIMS-------------  231 (307)
T ss_pred             cCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhccccccC-------------
Confidence            00000000          0011      111122233455567888888888888888854322110             


Q ss_pred             CccceeeeccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHH
Q psy5093         261 EKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGI  340 (662)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  340 (662)
                                                                                      ++.++-++|..+.+.+
T Consensus       232 ----------------------------------------------------------------~~~~~lq~QLf~aLv~  247 (307)
T PF10326_consen  232 ----------------------------------------------------------------SKTRKLQKQLFKALVI  247 (307)
T ss_pred             ----------------------------------------------------------------hhhHHHHHHHHHHHHH
Confidence                                                                            0112256777777765


Q ss_pred             HHH-HHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHH
Q psy5093         341 VMG-VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEK  406 (662)
Q Consensus       341 i~~-~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~  406 (662)
                      -++ =.++..+|..+..+...++-+       ......+...+..+.+++||++-.+.-++||++++
T Consensus       248 Qt~iP~i~~~~P~~~~~~~p~~~i~-------~~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~  307 (307)
T PF10326_consen  248 QTIIPFIFMYIPVFIVFILPFFGID-------LGFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK  307 (307)
T ss_pred             HhhhhheeeecchhheeeeeccCCC-------CCccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence            544 455668998888877766422       22334456667789999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=98.23  E-value=0.00015  Score=66.74  Aligned_cols=248  Identities=15%  Similarity=0.236  Sum_probs=151.7

Q ss_pred             hhHhhhhheeccccccchhhHHHHHHHHHHHhhhhh----cccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHHH
Q psy5093          68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLV----VMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNL  143 (662)
Q Consensus        68 gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~----~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l  143 (662)
                      |-.+++.++.-..-.+-+...|+..|.++-.+.+.+    ..|-++... ...+.. .+..-.+..+...++.++-.+.=
T Consensus        31 ~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl-~t~~~~-~s~~f~~~Sy~idf~h~siLfsN  108 (305)
T PF04789_consen   31 GAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSL-ITKEFV-QSELFIFMSYLIDFCHYSILFSN  108 (305)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHh-hhHHHh-ccchhhHHHHHHHHHHHHHHHHH
Confidence            333444444333333457889999999998887654    345322222 222222 23334556778888888889999


Q ss_pred             HHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccC---CCCCCccccC-------CCcchh
Q psy5093         144 CVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNE---EVPKNKCPFT-------DSKGYL  213 (662)
Q Consensus       144 ~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~---~~~~~~c~~~-------~~~~~~  213 (662)
                      ..||+.|....-+-....+.+...-..+-+..+|++++..-....-..-.+..+   ......|+..       ....-.
T Consensus       109 lviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~Iq  188 (305)
T PF04789_consen  109 LVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQ  188 (305)
T ss_pred             HHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchh
Confidence            999999988776433333455677788888999999988766554433222221   2222345333       233445


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccc
Q psy5093         214 IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNV  293 (662)
Q Consensus       214 ~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (662)
                      .+-.++.+.+|+.+. +.|+.+..++...++...                                              
T Consensus       189 iiE~ilQ~~IPi~Il-~iYiAIIiKI~~MKkssL----------------------------------------------  221 (305)
T PF04789_consen  189 IIEIILQFGIPIFIL-VIYIAIIIKIIKMKKSSL----------------------------------------------  221 (305)
T ss_pred             HHHHHHHHhHHHHHH-HHHHHHHHHHHHHhhccC----------------------------------------------
Confidence            677888999997655 457777666654443211                                              


Q ss_pred             cccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhH
Q psy5093         294 MSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEE  373 (662)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~  373 (662)
                                                        .+.|.+..|..+.+.+.|   ..+-.++.+-....    .......
T Consensus       222 ----------------------------------nK~Ei~ILKQAifIFvlF---Q~ss~VFl~~qt~~----~~~~tAF  260 (305)
T PF04789_consen  222 ----------------------------------NKNEITILKQAIFIFVLF---QASSCVFLLCQTFK----FNVATAF  260 (305)
T ss_pred             ----------------------------------CchhHHHHHHHHHHHHHH---HHHHHHHHhheeee----ecchHHH
Confidence                                              015777777776655544   44443333332221    1233344


Q ss_pred             HHHHHHHHHHHhhccccchhhhhcChhHHHHH
Q psy5093         374 LISAVVTWLGWINSGMNPVIYACWSRDFRSKE  405 (662)
Q Consensus       374 ~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~  405 (662)
                      .+..+...+-.+..+..|-.+...++|.||-+
T Consensus       261 lIKR~iNT~ei~agaatP~ffffTs~eirk~~  292 (305)
T PF04789_consen  261 LIKRIINTMEIFAGAATPCFFFFTSKEIRKLV  292 (305)
T ss_pred             HHHHHHHHHHHHhhccCCeEEEEehHHHHHHH
Confidence            56677777888889999999999999999874

>KOG4564|consensus

Probab=98.22  E-value=8.6e-05  Score=75.36  Aligned_cols=264  Identities=13%  Similarity=0.101  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccc-------c----ccccccc
Q psy5093          56 STLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDH-------N----WIFGLNW  124 (662)
Q Consensus        56 ~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~-------~----~~~~~~~  124 (662)
                      +++.+--.++++.=++.+.++..-|++|-..|+.=.||-++=++-++..+...........       .    -..+...
T Consensus       149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  228 (473)
T KOG4564|consen  149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG  228 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence            4555555555555555556666677888889999999999998887764442222221111       0    1246678


Q ss_pred             hhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcc
Q psy5093         125 CDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKC  204 (662)
Q Consensus       125 C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c  204 (662)
                      |+...++...+..+..+.+.+=+++=+-.+.--...    .++.....+.+.|.+++++..+-.+......+     ..|
T Consensus       229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d-----~~C  299 (473)
T KOG4564|consen  229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVRLYLED-----TGC  299 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHheeecc-----ccc
Confidence            999999999999999988888887766666543221    25667778889999999988887776522211     157


Q ss_pred             ccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCC
Q psy5093         205 PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP  284 (662)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (662)
                      ...........+.-.-.++.+++-.+..+.|++.+-++-|......                                  
T Consensus       300 W~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~----------------------------------  345 (473)
T KOG4564|consen  300 WDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLRASNASE----------------------------------  345 (473)
T ss_pred             cccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCccccc----------------------------------
Confidence            6555432222222222334455555556666666655443211100                                  


Q ss_pred             CCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhcc
Q psy5093         285 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTK  364 (662)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~  364 (662)
                                                                 ...-+|++|..++++=+|-+-.+.       ..+.++
T Consensus       346 -------------------------------------------~~~y~K~vKaTLvLIPLfGI~~il-------f~~~P~  375 (473)
T KOG4564|consen  346 -------------------------------------------TDQYRKLVKATLVLIPLFGIHYIL-------FAFRPD  375 (473)
T ss_pred             -------------------------------------------hHHHHHHHHHHHHHHHHcCCeeEE-------EEecCc
Confidence                                                       003556666666555554433221       111121


Q ss_pred             ccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093         365 CFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV  415 (662)
Q Consensus       365 ~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~  415 (662)
                      .   .........+-..|..++.++--++|++.|+|.|.++|+.+.+.+..
T Consensus       376 ~---~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~~  423 (473)
T KOG4564|consen  376 E---DTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWRLS  423 (473)
T ss_pred             h---HHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcChh
Confidence            0   01233344566678888999999999999999999999988776544

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.21  E-value=0.0002  Score=71.34  Aligned_cols=273  Identities=11%  Similarity=0.075  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhheecc-ccccchhhHHHHH----HHHHHHhhhhhcccHHHHHhhc---cccccccccch
Q psy5093          54 LVSTLSLFSLVTVFGNALVMIAVVRE-RYLHTSTNYFIMS----LALADCLVGLVVMPFSALYELL---DHNWIFGLNWC  125 (662)
Q Consensus        54 ~~~~~~ii~i~gl~gN~~vi~~i~~~-~~lr~~~~~ll~~----Lai~Dll~~l~~~p~~~~~~~~---~~~~~~~~~~C  125 (662)
                      +....=++.+++++-|++.++.+.++ ++.-+.....+++    ..+.|+..+.+..|+.......   .|-...-..-.
T Consensus         6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~   85 (302)
T PF10318_consen    6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT   85 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence            45566677888999999988877665 3322333333333    3467888887777744433221   11111112346


Q ss_pred             hHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccc--------cC
Q psy5093         126 DSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVR--------NE  197 (662)
Q Consensus       126 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~--------~~  197 (662)
                      .++.++..........++..+=-+||.++....+  +...++......+..++++....+|........+        ..
T Consensus        86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~  163 (302)
T PF10318_consen   86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKY  163 (302)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhc
Confidence            6777777777778888888888999999996533  2222333334455556666666666655433210        01


Q ss_pred             CCCC--Ccc-c----cCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeecc
Q psy5093         198 EVPK--NKC-P----FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHR  270 (662)
Q Consensus       198 ~~~~--~~c-~----~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (662)
                      +...  ..+ +    ...+..+......+..++....+++....+.+.++++.+.                         
T Consensus       164 pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~-------------------------  218 (302)
T PF10318_consen  164 PCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKK-------------------------  218 (302)
T ss_pred             cCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-------------------------
Confidence            1111  011 0    0111222223333333333333444444444444443321                         


Q ss_pred             CCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhh-h
Q psy5093         271 GGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVC-W  349 (662)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~-~  349 (662)
                                                                         +..++..+.++|..+.+.+-+++.++. -
T Consensus       219 ---------------------------------------------------~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~  247 (302)
T PF10318_consen  219 ---------------------------------------------------TMSKKTRKMQKKFLIALIIQVLIPFIFLF  247 (302)
T ss_pred             ---------------------------------------------------hhCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                                               011122336777777777666655554 4


Q ss_pred             hhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhccc
Q psy5093         350 LPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHK  411 (662)
Q Consensus       350 ~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~  411 (662)
                      .|..........+.       ....+..+...+...++...-++..+.++.+|+.+++++||
T Consensus       248 ~P~~~~~~~~~~~~-------~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~  302 (302)
T PF10318_consen  248 IPLIYFIISIIFGY-------YNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC  302 (302)
T ss_pred             hhHHHHHHHHhccc-------cccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence            56665555443321       12345567777888999999999999999999999988875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.18  E-value=0.00026  Score=67.76  Aligned_cols=69  Identities=10%  Similarity=-0.012  Sum_probs=54.0

Q ss_pred             hhhhhHHHHHHHHHH-HHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHH
Q psy5093         330 KEKKAAKTLGIVMGV-FIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSK  404 (662)
Q Consensus       330 ~~~~~~~~l~~i~~~-f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~  404 (662)
                      -+++..|.+.+-+++ .+++..|-.+......++      .+...+...+.......-++++|+.-.+.-+.||++
T Consensus       240 lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~------i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r  309 (310)
T PF10319_consen  240 LQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG------IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR  309 (310)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc------CChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence            577778877766554 567888988887665553      445677888888888899999999999999999985

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.17  E-value=0.00026  Score=67.88  Aligned_cols=132  Identities=16%  Similarity=0.119  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhh--ccccccccccchhHH
Q psy5093          51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYEL--LDHNWIFGLNWCDSW  128 (662)
Q Consensus        51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~--~~~~~~~~~~~C~~~  128 (662)
                      ..+...+-.+..++..+.|..++..+...|+.+++.-.++--..+.|.+.+....+.......  ...+....+..--..
T Consensus         5 ~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~   84 (273)
T PF10316_consen    5 AIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYI   84 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeeh
Confidence            345566667778888999999999888777744555556666799999998876553322222  111111011122233


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHh
Q psy5093         129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGG  182 (662)
Q Consensus       129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~  182 (662)
                      ++...............||+||.+|+..|..|++...+-....+++.+-..++.
T Consensus        85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~~~~~~~  138 (273)
T PF10316_consen   85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIALSYGLF  138 (273)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHHHHHHHH
Confidence            444455556678889999999999999999887765555544444444333333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=98.01  E-value=0.001  Score=65.68  Aligned_cols=112  Identities=11%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             hhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCcccccc
Q psy5093         473 IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNV  552 (662)
Q Consensus       473 ~~~~~~~f~lP~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (662)
                      .....+..++|+++++++-..+...++||.|+++...++..                                       
T Consensus       182 ~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~---------------------------------------  222 (303)
T PF05296_consen  182 FILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFR---------------------------------------  222 (303)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC---------------------------------------
Confidence            33344788999999999999999999999999875432210                                       


Q ss_pred             ccCCCCcccccCCcccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchh
Q psy5093         553 MSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEE  632 (662)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~  632 (662)
                                                     .-+.+++.|++|++...++.|+++++-..+...-..+.        ..+
T Consensus       223 -------------------------------~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~~--------~~~  263 (303)
T PF05296_consen  223 -------------------------------DPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFFFP--------ENS  263 (303)
T ss_pred             -------------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccc
Confidence                                           00125789999999988888888776544432222221        123


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         633 LISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       633 ~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      .+..+...+.++.+...|+|=.+-|+++||
T Consensus       264 ~~~~~~~~i~~~yps~hs~iLIlgn~KLr~  293 (303)
T PF05296_consen  264 IWFWVCEIIIALYPSGHSIILILGNPKLRQ  293 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence            445667778899999999999999999885

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.99  E-value=2.5e-06  Score=82.01  Aligned_cols=131  Identities=17%  Similarity=0.103  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHH
Q psy5093          55 VSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVL  134 (662)
Q Consensus        55 ~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~  134 (662)
                      .++..+-+.+++++-.+.++++...|++|+..+....||++++++..+..+. ... ....+.....+..|...+.+..+
T Consensus         4 ~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~-~~~-~~~~~~~~~~~~~C~~~a~~~hy   81 (242)
T PF00002_consen    4 SIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLI-GIS-QTFSPISTTNHCLCRAIAILLHY   81 (242)
T ss_dssp             HHHHHHHHH-----------------------------------------------------------------------
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhe-ehh-hccccccccccccchhhhhHhHH
Confidence            3445555666677766666666666788887788899999999988765443 111 11111111112249999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhh
Q psy5093         135 FSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWW  191 (662)
Q Consensus       135 ~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~  191 (662)
                      +..++...+.+.+++-|..+..+..    ..+++.....+..|.++.++........
T Consensus        82 ~~la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~  134 (242)
T PF00002_consen   82 FFLASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVN  134 (242)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeec
Confidence            9999999999999999999987632    1244556677788999888777766554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF03125 Sre: C

Probab=97.66  E-value=0.014  Score=59.56  Aligned_cols=42  Identities=12%  Similarity=0.025  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093         372 EELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS  413 (662)
Q Consensus       372 ~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~  413 (662)
                      ......+......+++.+-|.+-....+..|+++++.+.+.+
T Consensus       282 ~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~  323 (365)
T PF03125_consen  282 RTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR  323 (365)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence            445667777888899999999999999999999888776544

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=97.60  E-value=0.0032  Score=61.89  Aligned_cols=63  Identities=11%  Similarity=0.169  Sum_probs=43.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       589 ~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      .++++..-..++-..+++.++=|..+..+           ..++....+++..-.+|+..||+||-.+||..|+
T Consensus       237 ~~~qI~iQs~iIC~f~~i~a~iyv~m~f~-----------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~  299 (313)
T PF10321_consen  237 AQRQIFIQSVIICFFHAIAAVIYVYMQFF-----------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRN  299 (313)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHeeeee-----------cccHHHHHHHHHHHhccCCccceEEEEECHHHHH
Confidence            45555555555555556665555444322           2356677777878889999999999999999885

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.56  E-value=0.012  Score=58.65  Aligned_cols=110  Identities=11%  Similarity=0.119  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhheeccccccc-hhhHHHHHHHHHHHhhhhhcc-cHH-HHHhhc----ccccccccc
Q psy5093          51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHT-STNYFIMSLALADCLVGLVVM-PFS-ALYELL----DHNWIFGLN  123 (662)
Q Consensus        51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~-~~~~ll~~Lai~Dll~~l~~~-p~~-~~~~~~----~~~~~~~~~  123 (662)
                      ..+..++..++.++++++....+-.+.++.-..+ ...+++.+|..+++=-..... -.. +...+.    ..+..+...
T Consensus        20 ~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~   99 (328)
T PF02117_consen   20 FRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSS   99 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecC
Confidence            3445556667777888888888777777665554 556677777766644322211 111 112221    113445666


Q ss_pred             chhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy5093         124 WCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTY  160 (662)
Q Consensus       124 ~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y  160 (662)
                      .|.....+..++.....+..+++.+||.+|-..|-.|
T Consensus       100 eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~  136 (328)
T PF02117_consen  100 ECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY  136 (328)
T ss_pred             ceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence            7998888888888888999999999999999887544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.46  E-value=0.00078  Score=65.96  Aligned_cols=165  Identities=14%  Similarity=0.108  Sum_probs=97.5

Q ss_pred             cCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecCC-chhHhhhhhHHHHHhHHHHHHHHHHHHH
Q psy5093         418 LLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDS-KGYLIFSSTISFYLPLLVMVFTYFKIYR  496 (662)
Q Consensus       418 ~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~-~~y~~~~~~~~f~lP~~ii~~~Y~~I~~  496 (662)
                      .+....++.....+++.-|+.+.+..+|.+......-+.+++ -.-..+.+ .............+-+++.+++|..++.
T Consensus       110 ~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~  188 (283)
T PF10323_consen  110 RHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN-MSLFVDPEFIQRNFLIAFIFVSVTCVICIVCYGIIFI  188 (283)
T ss_pred             HHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc-eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566777788899999999999999955543322111111 11111111 1122233344455677788999999999


Q ss_pred             HHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccccccc
Q psy5093         497 AAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVK  576 (662)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (662)
                      .+||+.+...                                                                      
T Consensus       189 ~iRk~~k~~s----------------------------------------------------------------------  198 (283)
T PF10323_consen  189 FIRKRNKKKS----------------------------------------------------------------------  198 (283)
T ss_pred             HHHHhhhhhh----------------------------------------------------------------------
Confidence            9987763110                                                                      


Q ss_pred             ccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhc
Q psy5093         577 NFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACW  656 (662)
Q Consensus       577 ~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~  656 (662)
                          .+..++.++|.|.+.+.+++++++++.- =|.+.....+...+    .........+...+.-..|.+||+.=-++
T Consensus       199 ----~~~s~~~~rE~~L~~~~~i~~~a~~~~~-~~~~~~~~~~~~~~----~~~~~~~r~~y~~~~~~~s~inP~~LLi~  269 (283)
T PF10323_consen  199 ----KSSSRSRRREIRLAIQVFILFCAFFVIL-VYYIFSNYFAQNFN----TDPIFYLRAFYPILNGLLSFINPWMLLIF  269 (283)
T ss_pred             ----HhhhhhhhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHhhhhHHhhhc
Confidence                0112233577788777766665544433 34444444333221    11122333366677888999999999999


Q ss_pred             cccccC
Q psy5093         657 SRDFRR  662 (662)
Q Consensus       657 ~~~fR~  662 (662)
                      |+++||
T Consensus       270 n~~lr~  275 (283)
T PF10323_consen  270 NKDLRK  275 (283)
T ss_pred             cHHHHH
Confidence            999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.39  E-value=0.026  Score=55.22  Aligned_cols=121  Identities=12%  Similarity=0.060  Sum_probs=79.7

Q ss_pred             ccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCC
Q psy5093         122 LNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPK  201 (662)
Q Consensus       122 ~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~  201 (662)
                      +..=++..++...+.+.+....++.++-|.+.+..|.++ +...++-.....-++.++++..+.|.+...+....-+.+.
T Consensus       100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~-~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf  178 (307)
T PF10322_consen  100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNH-KKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPF  178 (307)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccch-hHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCC
Confidence            344677788888999999999999999999999999765 3445555566777777788887777666544332211111


Q ss_pred             Ccc------ccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5093         202 NKC------PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT  243 (662)
Q Consensus       202 ~~c------~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~  243 (662)
                      ...      ...+..........+....-.+.++++++.+++++|+.+
T Consensus       179 ~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k  226 (307)
T PF10322_consen  179 PFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK  226 (307)
T ss_pred             CCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111      111222222333444455557788888999999998876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.22  E-value=0.0013  Score=63.48  Aligned_cols=71  Identities=21%  Similarity=0.314  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       589 ~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      +++|+.|.+.++++.|+.+|.=..+...+....+.   +.+....+.....++...|.+.|-++|.++|+|||+
T Consensus       181 ~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~---~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~  251 (257)
T PF10320_consen  181 RSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGL---DGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRK  251 (257)
T ss_pred             hHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHH
Confidence            57889999999999999999888877777554432   233444566777889999999999999999999996

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.16  E-value=0.044  Score=53.07  Aligned_cols=126  Identities=16%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             HHHHhhHhhhhheecccccc-chhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHH
Q psy5093          64 VTVFGNALVMIAVVRERYLH-TSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILN  142 (662)
Q Consensus        64 ~gl~gN~~vi~~i~~~~~lr-~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~  142 (662)
                      ++++|..+++.-+.-+-+-| .++-.++.-+.++++...+=.    +++.-...+|.  +..|.+...+.......-...
T Consensus         3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INa----iIW~~n~~~~~--~~wCDI~~kl~~~~~~g~~~a   76 (283)
T PF02076_consen    3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINA----IIWRDNDINWW--PVWCDISTKLIIGSSVGIPAA   76 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhh----hhcCCCCCccC--ceeeeehHHHHHHHHHHHHHH
Confidence            34555555544443332223 477788889999998884432    22221122222  378999988877766665444


Q ss_pred             HHHHHHHHhhhhcCCCCC--CccccchhhhHHHHHHHHHHHhhhhhHHHhhhcccc
Q psy5093         143 LCVISLDRYWAITDPLTY--PSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN  196 (662)
Q Consensus       143 l~~iaidRy~~I~~P~~y--~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~  196 (662)
                      .++|+-.=| .|..+...  .+.-++|+..+=+.+++.+.++......+.......
T Consensus        77 ~lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~  131 (283)
T PF02076_consen   77 SLCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFD  131 (283)
T ss_pred             HHHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccee
Confidence            444444333 23333221  112236777778888888888887777776554433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.04  E-value=0.27  Score=48.26  Aligned_cols=58  Identities=14%  Similarity=0.213  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhcccccc
Q psy5093         597 LGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR  661 (662)
Q Consensus       597 ~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR  661 (662)
                      +..=.++|++||+|-.+-.+...+.+.       +..+..+=..++-+.-.+|.++|++-++..+
T Consensus       204 L~~Yp~ifiicw~fa~INRI~~~~~~~-------~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~  261 (303)
T PF05462_consen  204 LVNYPLIFIICWIFATINRIYNFIGKN-------PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMW  261 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            445677999999999999998876421       2222222234566677889999998887543

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]

Probab=96.70  E-value=0.67  Score=45.98  Aligned_cols=150  Identities=11%  Similarity=0.110  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHH-Hhhcc--c---------ccccc
Q psy5093          54 LVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSAL-YELLD--H---------NWIFG  121 (662)
Q Consensus        54 ~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~-~~~~~--~---------~~~~~  121 (662)
                      .-....+...+.++.+++.++++...++.-+-...-++-|+++-++.++..+.-.+. .....  .         ....+
T Consensus        11 ~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~   90 (328)
T PF01534_consen   11 ARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLE   90 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCC
Confidence            344455555666666667666665554432333444555666665555443321111 01000  0         01224


Q ss_pred             ccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCC
Q psy5093         122 LNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPK  201 (662)
Q Consensus       122 ~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~  201 (662)
                      ...|.+...+.+++..++...-+.+++.-|++-.....  ..--.++....-++.|.++.+..+..+......  .+...
T Consensus        91 ~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~--~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vd--gD~lt  166 (328)
T PF01534_consen   91 NSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWG--SEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVD--GDELT  166 (328)
T ss_pred             CCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC--cchhhhhcchhhhHHhhhhHHHHHHHHHhcccc--ccccc
Confidence            56799999999998888887778889999998876433  223345666778999999999888777654333  23344


Q ss_pred             CccccC
Q psy5093         202 NKCPFT  207 (662)
Q Consensus       202 ~~c~~~  207 (662)
                      +.|...
T Consensus       167 GiC~Vg  172 (328)
T PF01534_consen  167 GICFVG  172 (328)
T ss_pred             ceeEEe
Confidence            556443

In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.16  E-value=0.045  Score=53.56  Aligned_cols=66  Identities=15%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         587 FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       587 ~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      .++|.+..+-.+.--+.|++.++=|++..-+..        +  ....+..+...-.+.-++|++|+..+|+++|+
T Consensus       202 ~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~~--------~--~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~  267 (274)
T PF10328_consen  202 RRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLSS--------N--RWWQFFCTTFSWVLVHALDGLIMLIFNSEIRR  267 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c--cHHHHHHHHHHHHHHHHhcceeEeEEcHHHHH
Confidence            356888888888888888888887777754311        1  12222222222345677899999999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=96.06  E-value=0.044  Score=48.49  Aligned_cols=96  Identities=10%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhhHhhhhheeccccccc--hhhHHHHHHHHHHHhhhhhcccHHHHH-----hhccc-cccccccchhHHHH
Q psy5093          59 SLFSLVTVFGNALVMIAVVRERYLHT--STNYFIMSLALADCLVGLVVMPFSALY-----ELLDH-NWIFGLNWCDSWRS  130 (662)
Q Consensus        59 ~ii~i~gl~gN~~vi~~i~~~~~lr~--~~~~ll~~Lai~Dll~~l~~~p~~~~~-----~~~~~-~~~~~~~~C~~~~~  130 (662)
                      .++-..+.+.+.+.+..+.++|++..  ...+     ..+-+..-++.+|+.+..     .++.+ +-..+-..|.+..-
T Consensus        48 ~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTI-----vFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk~  122 (226)
T PF06681_consen   48 FIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTI-----VFATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLKN  122 (226)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeE-----EEeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHHh
Confidence            34455566666666555666665321  1111     112222223345544332     22222 23346678998877


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy5093         131 LDVLFSTASILNLCVISLDRYWAITDPLT  159 (662)
Q Consensus       131 ~~~~~~~~s~~~l~~iaidRy~~I~~P~~  159 (662)
                      +............+++|++||+.|..-.|
T Consensus       123 f~S~t~s~~~vip~aVAIyRy~~VV~k~r  151 (226)
T PF06681_consen  123 FTSSTTSCAQVIPVAVAIYRYLIVVLKKR  151 (226)
T ss_pred             HHHHHhhhhccchhhhhhhhhheeeeccc
Confidence            77766666666677899999999997433

The function of this family is unknown.

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=95.81  E-value=0.058  Score=40.19  Aligned_cols=70  Identities=14%  Similarity=0.245  Sum_probs=53.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhh-hHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhcccccc
Q psy5093         588 AKEKKAAKTLGIVMGVFIVCWL-PFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR  661 (662)
Q Consensus       588 ~~~~k~~~~~~~vv~~f~icw~-P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR  661 (662)
                      ++-+|.+|.+++==++|+++|+ |+.+-.+......    .+..+.++..++..+..+|..+|=++|++.-+.-|
T Consensus         5 ~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~----~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw~   75 (76)
T PF11970_consen    5 KRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEI----GHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPWR   75 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCchHHHHHHHHHHHccCHHHhhheeeecccCC
Confidence            4566788899999999999999 8877666554221    23455677788888999999999999998876544

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.58  E-value=0.37  Score=47.69  Aligned_cols=70  Identities=20%  Similarity=0.318  Sum_probs=55.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         587 FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       587 ~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      .+++|++.+.+++=.++-.+|-+|..+...+.....      +.......+...+..++|.+|=++--+.++.|||
T Consensus       232 y~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~------~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~  301 (303)
T PF10327_consen  232 YQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEF------EDAQVISEICLAIFSSHSSVNMIVLIITTPPYRK  301 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecC------CCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhh
Confidence            358889999999888899999999999887655432      2233455666777888999999999999999996

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=95.03  E-value=0.078  Score=39.51  Aligned_cols=71  Identities=13%  Similarity=0.245  Sum_probs=53.4

Q ss_pred             hHHhhhhhHHHHHHHHHHHHhhhh-hHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhH
Q psy5093         327 KFAKEKKAAKTLGIVMGVFIVCWL-PFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDF  401 (662)
Q Consensus       327 ~~~~~~~~~~~l~~i~~~f~i~~~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~f  401 (662)
                      ++++-+|.++.+++=-++|+++|+ |..+-.+ ....+.   ......++..+...+..+|.++|-++|.++-+.-
T Consensus         3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~-~~~~~~---~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw   74 (76)
T PF11970_consen    3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRM-QYMYEI---GHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW   74 (76)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc---CCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence            344677888999999999999999 6554444 333221   2444678889999999999999999999876543

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.30  E-value=0.12  Score=49.33  Aligned_cols=66  Identities=11%  Similarity=0.178  Sum_probs=48.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhcccccc
Q psy5093         589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR  661 (662)
Q Consensus       589 ~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR  661 (662)
                      .|.||++++++++.+|+..+.--.++........+       ...+..+...++.+-+.+=|++---.+++..
T Consensus       195 pE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~-------~~~~~~~~~~ls~cfptisPfvLI~~d~~i~  260 (265)
T PF03402_consen  195 PETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN-------SPWLLNISVFLSSCFPTISPFVLISSDKRII  260 (265)
T ss_pred             hhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC-------CcceeEHHHHHhHHhHhhChHHhhccCchHH
Confidence            58899999999999999999988887654332221       1233445667788888999998777776654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=94.16  E-value=0.52  Score=46.43  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHH
Q psy5093         595 KTLGIVMGVFIVCWLPFFVVNLLSA  619 (662)
Q Consensus       595 ~~~~~vv~~f~icw~P~~i~~l~~~  619 (662)
                      +..+.+.++|.+||+|..+-.++-.
T Consensus       244 ~kFf~I~lVF~iCWlpNIINg~LL~  268 (405)
T PF02101_consen  244 IKFFKIMLVFYICWLPNIINGSLLF  268 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhHhHHHHH
Confidence            4477888999999999988877543

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.03  E-value=5  Score=37.10  Aligned_cols=49  Identities=12%  Similarity=0.133  Sum_probs=41.4

Q ss_pred             ccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccc
Q psy5093         116 HNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRM  164 (662)
Q Consensus       116 ~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~  164 (662)
                      .+-..++..+|.......+....+++.-..+++||++|...--+|.+..
T Consensus        76 CdLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r  124 (236)
T PF02175_consen   76 CDLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTR  124 (236)
T ss_pred             ceEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCc
Confidence            4455677789999999999999999999999999999999877776543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=92.83  E-value=8.8  Score=36.33  Aligned_cols=31  Identities=23%  Similarity=0.552  Sum_probs=22.2

Q ss_pred             CchhHhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q psy5093         468 SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAV  499 (662)
Q Consensus       468 ~~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~~  499 (662)
                      ..+.++...++.+.+|++|.+ .|+.|..++.
T Consensus       184 P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~  214 (305)
T PF04789_consen  184 PRGIQIIEIILQFGIPIFILV-IYIAIIIKII  214 (305)
T ss_pred             CCchhHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            456788999999999987754 4655555443

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.29  E-value=0.1  Score=44.57  Aligned_cols=61  Identities=11%  Similarity=0.161  Sum_probs=49.6

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHH
Q psy5093         129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAIL  189 (662)
Q Consensus       129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~  189 (662)
                      ..+.++++....+...+|+++|...|.+|.+...++|.++.++-+++..++.+..-+.+.+
T Consensus        48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~  108 (153)
T PF03383_consen   48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF  108 (153)
T ss_pred             eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence            4566777888889999999999999999998666899999998888777776665555544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF13853 7tm_4: Olfactory receptor

Probab=89.41  E-value=0.0052  Score=53.21  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=47.1

Q ss_pred             eeeeehhhHHHHHHhhchhhhhhcccccCCc-cCCCCce---------e-cCCchhHhhhhhHHHHHhHHHHHHHHHHHH
Q psy5093         427 YLVLISLCYYVTTLVLTAPAILWWRAVRNEE-VPKNKCP---------F-TDSKGYLIFSSTISFYLPLLVMVFTYFKIY  495 (662)
Q Consensus       427 ~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~-~~~~~C~---------~-~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I~  495 (662)
                      ....+...+|+.+++..+|.........+.+ .+...|+         + ..+..+.........+.|+++++++|++|.
T Consensus         2 ~c~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il   81 (144)
T PF13853_consen    2 CCLLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRIL   81 (144)
T ss_pred             EEehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEE
Confidence            3456677899999988887665433332222 2222332         2 112334445555667899999999999999


Q ss_pred             HHHHHh
Q psy5093         496 RAAVVQ  501 (662)
Q Consensus       496 ~~~~~~  501 (662)
                      ..+.|.
T Consensus        82 ~avlki   87 (144)
T PF13853_consen   82 RAVLKI   87 (144)
T ss_pred             ehhhcc
Confidence            887654

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=88.28  E-value=3.6  Score=40.54  Aligned_cols=69  Identities=16%  Similarity=0.299  Sum_probs=50.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         588 AKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       588 ~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      +.+++.+|.+.+=.+.-+++..|-....++..+.+.   +   ....-.+...++.+-+.+||+++-.+-+-|||
T Consensus       220 ~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~---~---~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~  288 (292)
T PF10317_consen  220 SMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGY---E---HPFLEYLIFMLASLPPLIDPLITLYFVRPYRK  288 (292)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---c---cHHHHHHHHHHHHHHHHhchHhheeeeHhHHH
Confidence            467788899998899999999988888877655432   1   12222334456778889999999998888875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	662
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-53
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-21
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		2e-52
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		5e-21
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		3e-52
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		8e-21
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		3e-52
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		7e-21
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		1e-36
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		9e-14
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		9e-14
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		2e-36
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		2e-13
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		2e-13
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		2e-36
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		2e-13
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		2e-13
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		4e-36
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		2e-13
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		2e-13
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		7e-36
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		3e-13
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		3e-13
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-34
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		3e-13
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		3e-13
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-34
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		6e-13
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		9e-28
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		1e-04
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		2e-27
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		2e-14
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		3e-27
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		3e-07
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		1e-06
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		1e-26
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		4e-11
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		1e-22
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		7e-12
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		1e-11
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		9e-18
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		3e-07
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		1e-17
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		3e-07
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		1e-17
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		2e-06
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		1e-13
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		7e-07
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		3e-13
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		4e-13
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		2e-12
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		5e-11
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		6e-11
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		1e-10
2x72_A	349	Crystal Structure Of The Constitutively Active E113		1e-08
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		1e-08
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		1e-08
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		1e-08
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		1e-08
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		2e-08
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		3e-07
4grv_A	510	The Crystal Structure Of The Neurotensin Receptor N		3e-05
3v2w_A	520	Crystal Structure Of A Lipid G Protein-Coupled Rece		9e-05

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score =  206 bits (524), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 176/342 (51%), Gaps = 65/342 (19%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + +L   W FG  WC+ 
Sbjct: 199 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAH-ILTKTWTFGNFWCEF 257
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 258 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 317
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 318 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 377
Query: 242 QTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGIT 301
           Q + +                           D      H      VE D   +GH    
Sbjct: 378 QLQKI---------------------------DKSEGRFHVQNLSQVEQDG-RTGHG--- 406
Query: 302 RQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA 360
                                R+ SKF  KE KA KTLGI+MG F +CWLPFF+VN++  
Sbjct: 407 --------------------LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 446
Query: 361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           +       E     +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 447 IQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 482

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLP 483
           V+I + + V+ L    P  + W+RA   E +     +  C F  ++ Y I SS +SFY+P
Sbjct: 301 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 360
Query: 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 543
           L++MVF Y ++++ A  Q + +                           D      H   
Sbjct: 361 LVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQN 393
Query: 544 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMG 602
              VE D   +GH                         R+ SKF  KE KA KTLGI+MG
Sbjct: 394 LSQVEQDG-RTGHG-----------------------LRRSSKFCLKEHKALKTLGIIMG 429
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
            F +CWLPFF+VN++  +       E     +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 430 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 482

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 176/342 (51%), Gaps = 65/342 (19%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + L+   W FG  WC+ 
Sbjct: 51  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 109
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 110 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 169
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 170 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 229
Query: 242 QTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGIT 301
           Q + +                           D      H      VE D   +GH    
Sbjct: 230 QLQKI---------------------------DKSEGRFHVQNLSQVEQDG-RTGHG--- 258
Query: 302 RQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA 360
                                R+ SKF  KE KA KTLGI+MG F +CWLPFF+VN++  
Sbjct: 259 --------------------LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 298
Query: 361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           +       E     +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 299 IQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 334

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLP 483
           V+I + + V+ L    P  + W+RA   E +     +  C F  ++ Y I SS +SFY+P
Sbjct: 153 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 212
Query: 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 543
           L++MVF Y ++++ A  Q + +                           D      H   
Sbjct: 213 LVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQN 245
Query: 544 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMG 602
              VE D   +GH                         R+ SKF  KE KA KTLGI+MG
Sbjct: 246 LSQVEQDG-RTGHG-----------------------LRRSSKFCLKEHKALKTLGIIMG 281
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
            F +CWLPFF+VN++  +       E     +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 282 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 334

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 176/342 (51%), Gaps = 65/342 (19%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + L+   W FG  WC+ 
Sbjct: 27  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 85
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 86  WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 145
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 146 IQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 205
Query: 242 QTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGIT 301
           Q + +                           D      H      VE D   +GH    
Sbjct: 206 QLQKI---------------------------DKSEGRFHVQNLSQVEQDG-RTGHG--- 234
Query: 302 RQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA 360
                                R+ SKF  KE KA KTLGI+MG F +CWLPFF+VN++  
Sbjct: 235 --------------------LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 274
Query: 361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           +       E     +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 275 IQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 310

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEVP----KNKCPFTDSKGYLIFSSTISFYLP 483
           V+I + + V+ L    P  + W+RA   E +     +  C F  ++ Y I SS +SFY+P
Sbjct: 129 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVP 188
Query: 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 543
           L++MVF Y ++++ A  Q + +                           D      H   
Sbjct: 189 LVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQN 221
Query: 544 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMG 602
              VE D   +GH                         R+ SKF  KE KA KTLGI+MG
Sbjct: 222 LSQVEQDG-RTGHG-----------------------LRRSSKFCLKEHKALKTLGIIMG 257
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
            F +CWLPFF+VN++  +       E     +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 258 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 310

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 176/342 (51%), Gaps = 65/342 (19%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + L+   W FG  WC+ 
Sbjct: 50  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 108
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 109 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 168
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 169 IQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 228
Query: 242 QTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGIT 301
           Q + +                           D      H      VE D   +GH    
Sbjct: 229 QLQKI---------------------------DKSEGRFHVQNLSQVEQDG-RTGHG--- 257
Query: 302 RQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA 360
                                R+ SKF  KE KA KTLGI+MG F +CWLPFF+VN++  
Sbjct: 258 --------------------LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 297
Query: 361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           +       E     +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 298 IQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 333

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEVP----KNKCPFTDSKGYLIFSSTISFYLP 483
           V+I + + V+ L    P  + W+RA   E +     +  C F  ++ Y I SS +SFY+P
Sbjct: 152 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVP 211
Query: 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 543
           L++MVF Y ++++ A  Q + +                           D      H   
Sbjct: 212 LVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQN 244
Query: 544 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMG 602
              VE D   +GH                         R+ SKF  KE KA KTLGI+MG
Sbjct: 245 LSQVEQDG-RTGHG-----------------------LRRSSKFCLKEHKALKTLGIIMG 280
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
            F +CWLPFF+VN++  +       E     +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 281 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 333

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 7/185 (3%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + +L   W FG  WC+ 
Sbjct: 22  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAH-ILTKTWTFGNFWCEF 80
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 81  WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 140
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 141 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 200
Query: 242 QTKSL 246
           Q + +
Sbjct: 201 QLQKI 205

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 323 RKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 381
           +K+ KF  KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W
Sbjct: 203 QKIDKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNW 257
Query: 382 LGWINSGMNPVIYACWSRDFR 402
           +G++NSG NP+IY C S DFR
Sbjct: 258 IGYVNSGFNPLIY-CRSPDFR 277

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 582 RKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
           +K+ KF  KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W
Sbjct: 203 QKIDKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNW 257
Query: 641 LGWINSGMNPVIYACWSRDFR 661
           +G++NSG NP+IY C S DFR
Sbjct: 258 IGYVNSGFNPLIY-CRSPDFR 277

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 113/181 (62%), Gaps = 7/181 (3%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + L+   W FG  WC+ 
Sbjct: 58  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 116
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 117 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 176
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 177 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 236
Query: 242 Q 242
           Q
Sbjct: 237 Q 237

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
           KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W+G++NSG 
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 457
Query: 390 NPVIYACWSRDFR 402
           NP+IY C S DFR
Sbjct: 458 NPLIY-CRSPDFR 469

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
           KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W+G++NSG 
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 457
Query: 649 NPVIYACWSRDFR 661
           NP+IY C S DFR
Sbjct: 458 NPLIY-CRSPDFR 469

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 113/181 (62%), Gaps = 7/181 (3%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + L+   W FG  WC+ 
Sbjct: 57  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 115
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 116 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 175
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 176 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 235
Query: 242 Q 242
           Q
Sbjct: 236 Q 236

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
           KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W+G++NSG 
Sbjct: 402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 456
Query: 390 NPVIYACWSRDFR 402
           NP+IY C S DFR
Sbjct: 457 NPLIY-CRSPDFR 468

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
           KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W+G++NSG 
Sbjct: 402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 456
Query: 649 NPVIYACWSRDFR 661
           NP+IY C S DFR
Sbjct: 457 NPLIY-CRSPDFR 468

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 113/181 (62%), Gaps = 7/181 (3%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + L+   W FG  WC+ 
Sbjct: 58  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 116
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 117 WTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 176
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 177 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 236
Query: 242 Q 242
           Q
Sbjct: 237 Q 237

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
           KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W+G++NSG 
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 457
Query: 390 NPVIYACWSRDFR 402
           NP+IY C S DFR
Sbjct: 458 NPLIY-CRSPDFR 469

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
           KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W+G++NSG 
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 457
Query: 649 NPVIYACWSRDFR 661
           NP+IY C S DFR
Sbjct: 458 NPLIY-CRSPDFR 469

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 112/181 (61%), Gaps = 7/181 (3%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A   L+   W FG  WC+ 
Sbjct: 26  GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKM-WTFGNFWCEF 84
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF  
Sbjct: 85  WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 144
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
           I   W+RA   E +     +  C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  
Sbjct: 145 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 204
Query: 242 Q 242
           Q
Sbjct: 205 Q 205

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
           KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W+G++NSG 
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 425
Query: 390 NPVIYACWSRDFR 402
           NP+IY C S DFR
Sbjct: 426 NPLIY-CRSPDFR 437

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
           KE KA KTLGI+MG F +CWLPFF+VN++  +       E     +  ++ W+G++NSG 
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 425
Query: 649 NPVIYACWSRDFR 661
           NP+IY C S DFR
Sbjct: 426 NPLIY-CRSPDFR 437

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 9/192 (4%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+   + L T TN FI SLA AD +VGL+V+PF A   ++   W++G   C+ 
Sbjct: 28  GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATL-VVRGTWLWGSFLCEL 86
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W SLDVL  TASI  LCVI++DRY AIT P  Y S M+  RA + I  VW  S  +SF  
Sbjct: 87  WTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP 146
Query: 188 IL--WWR-----AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAV 240
           I+  WWR     A++  + P   C F  ++ Y I SS ISFY+PLL+M+F   ++YR A 
Sbjct: 147 IMMHWWRDEDPQALKCYQDP-GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAK 205
Query: 241 VQTKSLKVGTKQ 252
            Q + +   +K+
Sbjct: 206 EQIRKIDRASKR 217

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 323 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWL 382
           RK     +E KA KTLGI+MGVF +CWLPFF+VN+++      F  +   + +     WL
Sbjct: 217 RKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNV-----FNRDLVPDWLFVAFNWL 271
Query: 383 GWINSGMNPVIYACWSRDFRSKEKIL 408
           G+ NS MNP+IY C S DFR   K L
Sbjct: 272 GYANSAMNPIIY-CRSPDFRKAFKRL 296

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Query: 582 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWL 641
           RK     +E KA KTLGI+MGVF +CWLPFF+VN+++      F  +   + +     WL
Sbjct: 217 RKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNV-----FNRDLVPDWLFVAFNWL 271
Query: 642 GWINSGMNPVIYACWSRDFRR 662
           G+ NS MNP+IY C S DFR+
Sbjct: 272 GYANSAMNPIIY-CRSPDFRK 291

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 9/192 (4%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV+ A+   + L T TN FI SLA AD +VGL+V+PF A   ++   W++G   C+ 
Sbjct: 28  GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATL-VVRGTWLWGSFLCEL 86
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W SLDVL  TASI  LCVI++DRY AIT P  Y S M+  RA + I  VW  S  +SF  
Sbjct: 87  WTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP 146
Query: 188 IL--WWR-----AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAV 240
           I+  WWR     A++  + P   C F  ++ Y I SS ISFY+PLL+M+F   ++YR A 
Sbjct: 147 IMMHWWRDEDPQALKCYQDP-GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAK 205
Query: 241 VQTKSLKVGTKQ 252
            Q + +   +K+
Sbjct: 206 EQIRKIDRASKR 217

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 8/83 (9%)
Query: 582 RKLSK--FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVT 639
           RK S+    +E KA KTLGI+MGVF +CWLPFF+VN+++      F  +   + +     
Sbjct: 217 RKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNV-----FNRDLVPDWLFVAFN 271
Query: 640 WLGWINSGMNPVIYACWSRDFRR 662
           WLG+ NS MNP+IY C S DFR+
Sbjct: 272 WLGYANSAMNPIIY-CRSPDFRK 293

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LVM+++   R+L T  NYF+ SLA AD ++G+  M    LY ++ + W  G   CD 
Sbjct: 40  GNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGY-WPLGPVVCDL 98
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W +LD + S AS++NL +IS DRY+ +T PLTYP + +T+ A + IA  W+ S  +  PA
Sbjct: 99  WLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPA 158
Query: 188 ILWWR---AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAA 239
           IL+W+    VR  E  +    F  +      ++  +FYLP+++M   Y+ I RA+
Sbjct: 159 ILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRAS 213

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 588 AKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSG 647
           ++EKK  +T+  ++  FI+ W P+ V+ L++  C  C         +  +  WL +INS 
Sbjct: 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI-----PNTVWTIGYWLCYINST 435
Query: 648 MNPVIYACWSRDFRR 662
           +NP  YA  +  F++
Sbjct: 436 INPACYALCNATFKK 450

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV +AV++ER L T+TNY ++SLA+AD LV  +VMP+    E+    W F    CD 
Sbjct: 55  GNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDV 114
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYP---SRMSTRRAYIWIAIVWICSGGIS 184
           + +LDV+  TASI NLC IS+DRY A+  P+ Y     + S RR  + I  VW+ +  +S
Sbjct: 115 FVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVS 174
Query: 185 FPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIY 236
            P +  +    +  V    C  ++   ++I+SS +SFYLP  V V  Y +IY
Sbjct: 175 CPLLFGFNTTGDPTV----CSISNPD-FVIYSSVVSFYLPFGVTVLVYARIY 221

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
           +EKKA + + IV+G FIVCWLPFF+ ++L+  C  C  S    EL SA  TWLG++NS +
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVS---PELYSA-TTWLGYVNSAL 450
Query: 649 NPVIYACWSRDFRR 662
           NPVIY  ++ +FR+
Sbjct: 451 NPVIYTTFNIEFRK 464

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV++A    + L T  NYF++SLA AD ++G++ M     Y +++  W  G   CD 
Sbjct: 29  GNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNR-WALGNLACDL 87
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
           W S+D + S AS++NL VIS DRY++IT PLTY ++ +T+RA + I + W+ S  +  PA
Sbjct: 88  WLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPA 147
Query: 188 ILWWRA-VRNEEVPKNKC--PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYR 237
           IL+W+  V    VP  +C   F         ++  +FY+P+ +M   Y++IY+
Sbjct: 148 ILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYK 200

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 13/83 (15%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKC----FWSEQDEELISAVVTWLGWI 385
           KEKKAA+TL  ++  FI+ W P+ ++ L++  C  C    +W+         +  WL +I
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWN---------LGYWLCYI 418
Query: 386 NSGMNPVIYACWSRDFRSKEKIL 408
           NS +NPV YA  ++ FR+  K L
Sbjct: 419 NSTVNPVCYALCNKTFRTTFKTL 441

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 13/77 (16%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKC----FWSEQDEELISAVVTWLGWI 644
           KEKKAA+TL  ++  FI+ W P+ ++ L++  C  C    +W+         +  WL +I
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWN---------LGYWLCYI 418
Query: 645 NSGMNPVIYACWSRDFR 661
           NS +NPV YA  ++ FR
Sbjct: 419 NSTVNPVCYALCNKTFR 435

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 166/384 (43%), Gaps = 61/384 (15%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV  AV     L   TNYF++SLA AD  VG++ +PF+     +   +    + C  
Sbjct: 48  GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT---ISTGFCAACHGCLF 104
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                ++ + +SI +L  I++DRY AI  PL Y   ++  RA   IAI W+ S  I    
Sbjct: 105 IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP 164
Query: 188 ILWWRAVRNEEVPKN----------KCPFTD--SKGYLIFSSTISFYL-PLLVMVFTYFK 234
           +L W      +  KN           C F D     Y+++ +  +  L PLL+M+  Y +
Sbjct: 165 MLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLR 224
Query: 235 IYRAAVVQT-------KSLKVGTKQVMSGSTSGE-KELTLRIHRGGTDHRHMT---LHHT 283
           I+ AA  Q        ++L    K +     + + K+   ++     D +  T   L   
Sbjct: 225 IFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDK 284
Query: 284 PSDDVEMDNVMSGHNGITRQVSNT-RIIHKGHIVKNFS----------------LSRKLS 326
             D  EM +   G + +  Q+ +  ++ ++G + +  +                L R  S
Sbjct: 285 SPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARS 344
Query: 327 KFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWI- 385
              KE  AAK+L I++G+F +CWLP  ++N  +  C  C          S    WL ++ 
Sbjct: 345 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC----------SHAPLWLMYLA 394
Query: 386 ------NSGMNPVIYACWSRDFRS 403
                 NS +NP IYA   R+FR 
Sbjct: 395 IVLSHTNSVVNPFIYAYRIREFRQ 418

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 59/281 (20%)
Query: 430 LISLCYYVTTLVLTAPAILWWRAVRNEEVPKN----------KCPFTD--SKGYLIFSST 477
           +I++C+ ++  +   P +L W      +  KN           C F D     Y+++ + 
Sbjct: 149 IIAICWVLSFAIGLTP-MLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNF 207
Query: 478 ISFYL-PLLVMVFTYFKIYRAAVVQT-------KSLKVGTKQVMSGSTSGE-KELTLRIH 528
            +  L PLL+M+  Y +I+ AA  Q        ++L    K +     + + K+   ++ 
Sbjct: 208 FACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMR 267
Query: 529 RGGTDHRHMT---LHHTPSDDVEMDNVMSGHNGITRQVSNT-RIIHKGHIVKNFS----- 579
               D +  T   L     D  EM +   G + +  Q+ +  ++ ++G + +  +     
Sbjct: 268 AAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQL 327
Query: 580 -----------LSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSE 628
                      L R  S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C    
Sbjct: 328 KTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC---- 383
Query: 629 QDEELISAVVTWLGWI-------NSGMNPVIYACWSRDFRR 662
                 S    WL ++       NS +NP IYA   R+FR+
Sbjct: 384 ------SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQ 418

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 69  NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSW 128
           N LV+ AV  ER LHT  N +I+SL++AD +VG VVMP + LY LL   W  G   C  W
Sbjct: 26  NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILY-LLMSKWSLGRPLCLFW 84
Query: 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAI 188
            S+D + STASI ++ ++ +DRY ++  PL Y    +  RA   I   W  S     P +
Sbjct: 85  LSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPIL 144
Query: 189 LWWRAVRNEEVPK-NKCP--FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRA 238
            W   ++   V + +KC   F D   + + ++ I+FYLP L+M++ Y KIY+A
Sbjct: 145 GWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKA 197

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
           +E+KAAK LG +M  FI+CW+P+F+  ++ A C  C       E +     WLG+INS +
Sbjct: 367 RERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-----NEHLHMFTIWLGYINSTL 421
Query: 390 NPVIYACWSRDFRSKEKILNH 410
           NP+IY   + +F+   K + H
Sbjct: 422 NPLIYPLCNENFKKTFKRILH 442

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
           +E+KAAK LG +M  FI+CW+P+F+  ++ A C  C       E +     WLG+INS +
Sbjct: 367 RERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-----NEHLHMFTIWLGYINSTL 421
Query: 649 NPVIYACWSRDFRR 662
           NP+IY   + +F++
Sbjct: 422 NPLIYPLCNENFKK 435

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 134/337 (39%), Gaps = 63/337 (18%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV  AV     L   TNYF++S A AD LVG++ +PF+     +   +    + C  
Sbjct: 23  GNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA---ISTGFCAACHGCLF 79
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                ++ + +SI +L  I++DRY AI  PL Y   ++  RA   IAI W+ S  I    
Sbjct: 80  IACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP 139
Query: 188 ILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLK 247
           +L W    N   PK     +   G    +      +P+  MV  YF  + A V+    L 
Sbjct: 140 MLGWN---NCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMV--YFNFF-ACVLVPLLLM 193
Query: 248 VGTKQVMSGSTSGEKELTLRIHRGGTDH-RHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
           +G              + LRI        + M     P +                    
Sbjct: 194 LG--------------VYLRIFLAARRQLKQMESQPLPGE-------------------- 219
Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
                           R  S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C 
Sbjct: 220 ----------------RARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC- 262
Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
            S     L+   +  L   NS +NP IYA   R+FR 
Sbjct: 263 -SHAPLWLMYLAIV-LSHTNSVVNPFIYAYRIREFRQ 297

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 581 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
            R  S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C  S     L+   +  
Sbjct: 219 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV- 275
Query: 641 LGWINSGMNPVIYACWSRDFRR 662
           L   NS +NP IYA   R+FR+
Sbjct: 276 LSHTNSVVNPFIYAYRIREFRQ 297

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 134/337 (39%), Gaps = 63/337 (18%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV  AV     L   TNYF++SLA AD  VG++ +PF+     +   +    + C  
Sbjct: 23  GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT---ISTGFCAACHGCLF 79
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                ++ + +SI +L  I++DRY AI  PL Y   ++  RA   IAI W+ S  I    
Sbjct: 80  IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP 139
Query: 188 ILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLK 247
           +L W    N   PK     +   G    +      +P+  MV  YF  + A V+    L 
Sbjct: 140 MLGWN---NCGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMV--YFNFF-ACVLVPLLLM 193
Query: 248 VGTKQVMSGSTSGEKELTLRIHRGGTDH-RHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
           +G              + LRI        + M     P +                    
Sbjct: 194 LG--------------VYLRIFLAARRQLKQMESQPLPGE-------------------- 219
Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
                           R  S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C 
Sbjct: 220 ----------------RARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC- 262
Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
            S     L+   +  L   NS +NP IYA   R+FR 
Sbjct: 263 -SHAPLWLMYLAIV-LSHTNSVVNPFIYAYRIREFRQ 297

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 581 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
            R  S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C  S     L+   +  
Sbjct: 219 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV- 275
Query: 641 LGWINSGMNPVIYACWSRDFRR 662
           L   NS +NP IYA   R+FR+
Sbjct: 276 LSHTNSVVNPFIYAYRIREFRQ 297

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 133/337 (39%), Gaps = 63/337 (18%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV  AV     L   TNYF++SLA AD LVG++ +PF+     +   +    + C  
Sbjct: 23  GNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAIT---ISTGFCAACHGCLF 79
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                ++ + +SI +L  I++DRY AI  PL Y   ++  RA   IAI W+ S  I    
Sbjct: 80  IACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTP 139
Query: 188 ILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLK 247
           +L W    N   PK     +   G    +      +P+  MV  YF  + A V+    L 
Sbjct: 140 MLGWN---NCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMV--YFNFF-ACVLVPLLLM 193
Query: 248 VGTKQVMSGSTSGEKELTLRIHRGGTDH-RHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
           +G              + LRI        + M     P +                    
Sbjct: 194 LG--------------VYLRIFAAARRQLKQMESQPLPGE-------------------- 219
Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
                           R  S   KE  AAK+  I+ G+F +CWLP  ++N  +  C  C 
Sbjct: 220 ----------------RARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDC- 262
Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
            S     L+   +  L   NS +NP IYA   R+FR 
Sbjct: 263 -SHAPLWLMYLAIV-LAHTNSVVNPFIYAYRIREFRQ 297

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 581 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
            R  S   KE  AAK+  I+ G+F +CWLP  ++N  +  C  C  S     L+   +  
Sbjct: 219 ERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV- 275
Query: 641 LGWINSGMNPVIYACWSRDFRR 662
           L   NS +NP IYA   R+FR+
Sbjct: 276 LAHTNSVVNPFIYAYRIREFRQ 297

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 16/188 (8%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LV  AV     L   TNYF++SLA AD  VG++ +PF+     +   +    + C  
Sbjct: 38  GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT---ISTGFCAACHGCLF 94
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                ++ + +SI +L  I++DRY AI  PL Y   ++  RA   IAI W+ S  I    
Sbjct: 95  IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP 154
Query: 188 ILWWRAVRNEEVPKN----------KCPFTD--SKGYLIFSSTISFYL-PLLVMVFTYFK 234
           +L W      +  KN           C F D     Y+++ +  +  L PLL+M+  Y +
Sbjct: 155 MLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLR 214
Query: 235 IYRAAVVQ 242
           I+ AA  Q
Sbjct: 215 IFLAARRQ 222

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 585 SKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWI 644
           S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C  S     L+   +  L   
Sbjct: 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV-LSHT 441
Query: 645 NSGMNPVIYACWSRDFRR 662
           NS +NP IYA   R+FR+
Sbjct: 442 NSVVNPFIYAYRIREFRQ 459

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 14/201 (6%)
Query: 78  RERYLHTSTNYFIMSLALADCLVGLV-VMPFSALYELLDHNWIFGLNWCDSWRSLDVLFS 136
           + + L T  N FI++LA +D    LV   P   +   L   WIFG   C  +  +  +F 
Sbjct: 60  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-KWIFGFAACKVYGFIGGIFG 118
Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN 196
             SI+ + +IS+DRY  I  P+    +MS RRA+I I  VW+ S   +   I  W A   
Sbjct: 119 FMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTL 178
Query: 197 EEVPKNKCPF------TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL---- 246
           E V  N C F      + ++  ++    + F+ P+L++ F YF I  +     K +    
Sbjct: 179 EGVLCN-CSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA 237
Query: 247 -KVGTKQVMSGSTSGEKELTL 266
            ++  K++         E+ L
Sbjct: 238 KRLNAKELRKAQAGANAEMRL 258

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 14/201 (6%)
Query: 78  RERYLHTSTNYFIMSLALADCLVGLV-VMPFSALYELLDHNWIFGLNWCDSWRSLDVLFS 136
           + + L T  N FI++LA +D    LV   P   +   L   WIFG   C  +  +  +F 
Sbjct: 61  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-KWIFGFAACKVYGFIGGIFG 119
Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN 196
             SI+ + +IS+DRY  I  P+    +MS RRA+I I  VW+ S   +   I  W A   
Sbjct: 120 FMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTL 179
Query: 197 EEVPKNKCPF------TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL---- 246
           E V  N C F      + ++  ++    + F+ P+L++ F YF I  +     K +    
Sbjct: 180 EGVLCN-CSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA 238
Query: 247 -KVGTKQVMSGSTSGEKELTL 266
            ++  K++         E+ L
Sbjct: 239 KRLNAKELRKAQAGANAEMRL 259

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN+LVM  ++R   + T+TN +I +LALAD LV    MPF +   L+ ++W FG   C  
Sbjct: 39  GNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TTMPFQSTVYLM-NSWPFGDVLCKI 96
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             S+D      SI  L ++S+DRY A+  P+      +  +A I    +W+ S  +   A
Sbjct: 97  VLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISA 156
Query: 188 ILWWRAVRNEEVPKNKC----PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT 243
           I+       E+V   +C    P  D   + +F     F    ++ V      Y   +++ 
Sbjct: 157 IVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRL 216
Query: 244 KSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHH 282
           KS+++ +  +       E  L L+I++    +  + + H
Sbjct: 217 KSVRLLSGNIFEMLRIDEG-LRLKIYKDTEGYYTIGIGH 254

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LVM  +VR   + T+TN +I +LALAD L     +PF ++  L+   W FG   C  
Sbjct: 34  GNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMG-TWPFGNILCKI 91
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
             S+D      SI  LC +S+DRY A+  P+      + R A I     WI S  I  P 
Sbjct: 92  VISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPV 151
Query: 188 IL 189
           + 
Sbjct: 152 MF 153

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 25/212 (11%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LVM  ++R   + T+TN +I +LALAD LV L+ +PF     LL   W FG   C +
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGF-WPFGNALCKT 199
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPL-TYPSRMSTRRAYIWIAIVWICSGGISFP 186
             ++D      S   L  +S+DRY AI  P+     R S++   + +AI W  +  +  P
Sbjct: 200 VIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAI-WALASVVGVP 258
Query: 187 -AILWWRAVRNEEVPKNKC----PFTDSKGYLIFSSTI---SFYLPLLVMVFTYFKIYRA 238
            AI+    V +EE+   +C    P        +F+  I   SF +P+LV+   Y  + R 
Sbjct: 259 VAIMGSAQVEDEEI---ECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIR- 314
Query: 239 AVVQTKSLKVGTKQVMSGSTSGEKELTLRIHR 270
                   ++   +++SGS   ++ L  RI R
Sbjct: 315 --------RLRGVRLLSGSREKDRNLR-RITR 337

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 68  GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
           GN LVM  +VR   L T+TN +I +LALAD L     +PF +   L++  W FG   C +
Sbjct: 31  GNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLME-TWPFGELLCKA 88
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFP 186
             S+D      SI  L ++S+DRY A+  P+      +  +A +    +W+ + G+  P
Sbjct: 89  VLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVP 147

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69  NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
           N L +   V+ + L T  NY +++LA+AD    +V   F + LY  L   ++FG   C+ 
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 113
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                 L    ++ +L V++++RY  +  P++   R     A + +A  W+ +   + P 
Sbjct: 114 QGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 172
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
           ++ W     E + +  C          T+++ ++I+   + F +PL+V+ F Y    F +
Sbjct: 173 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
             AA  Q +S         + +   EKE+T
Sbjct: 232 KEAAAQQQES---------ATTQKAEKEVT 252

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69  NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
           N L +   V+ + L T  NY +++LA+AD    +V   F + LY  L   ++FG   C+ 
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 113
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                 L    ++ +L V++++RY  +  P++   R     A + +A  W+ +   + P 
Sbjct: 114 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 172
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
           ++ W     E + +  C          T+++ ++I+   + F +PL+V+ F Y    F +
Sbjct: 173 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
             AA  Q +S         + +   EKE+T
Sbjct: 232 KEAAAQQQES---------ATTQKAEKEVT 252

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69  NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
           N L +   V+ + L T  NY +++LA+AD    +V   F + LY  L   ++FG   C+ 
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 112
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                 L    ++ +L V++++RY  +  P++   R     A + +A  W+ +   + P 
Sbjct: 113 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 171
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
           ++ W     E + +  C          T+++ ++I+   + F +PL+V+ F Y    F +
Sbjct: 172 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 230
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
             AA  Q +S         + +   EKE+T
Sbjct: 231 KEAAAQQQES---------ATTQKAEKEVT 251

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69  NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
           N L +   V+ + L T  NY +++LA+AD    +V   F + LY  L   ++FG   C+ 
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 113
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                 L    ++ +L V++++RY  +  P++   R     A + +A  W+ +   + P 
Sbjct: 114 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 172
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
           ++ W     E + +  C          T+++ ++I+   + F +PL+V+ F Y    F +
Sbjct: 173 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
             AA  Q +S         + +   EKE+T
Sbjct: 232 KEAAAQQQES---------ATTQKAEKEVT 252

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69  NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
           N L +   V+ + L T  NY +++LA+AD    +V   F + LY  L   ++FG   C+ 
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 112
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                 L    ++ +L V++++RY  +  P++   R     A + +A  W+ +   + P 
Sbjct: 113 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 171
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
           ++ W     E + +  C          T+++ ++I+   + F +PL+V+ F Y    F +
Sbjct: 172 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 230
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
             AA  Q +S         + +   EKE+T
Sbjct: 231 KEAAAQQQES---------ATTQKAEKEVT 251

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69  NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
           N L +   V+ + L T  NY +++LA+AD    +V   F + LY  L   ++FG   C+ 
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 113
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
                 L    ++ +L V++++RY  +  P++   R     A + +A  W+ +   + P 
Sbjct: 114 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 172
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
           ++ W     E + +  C          T+++ ++I+   + F +PL+V+ F Y    F +
Sbjct: 173 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
             AA  Q +S         + +   EKE+T
Sbjct: 232 KEAAAQQQES---------ATTQKAEKEVT 252

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 76  VVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHN-WIFGLNWCDSWRSLDVL 134
           ++  + + T TNYF+++LA A+  +       +  Y +  HN W +GL +C       + 
Sbjct: 57  ILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAV--HNEWYYGLFYCKFHNFFPIA 114
Query: 135 FSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILW---- 190
              ASI ++  ++ DRY AI  PL    R+S     + I ++W+ +  ++FP   +    
Sbjct: 115 AVFASIYSMTAVAFDRYMAIIHPLQ--PRLSATATKVVICVIWVLALLLAFPQGYYSTTE 172
Query: 191 ---WRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTY 232
               R V   E P++     + K Y I  + + ++LPLLV+ + Y
Sbjct: 173 TMPSRVVCMIEWPEHPNKIYE-KVYHICVTVLIYFLPLLVIGYAY 216

>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 68  GNALVMIAVVRERYLHT---STNYFIMSLALADCLVGLVVMPFSALYELL--DHNWIFGL 122
           GN++ +  + R++ L +   + +Y + SLAL+D L+ L+ MP   LY  +   H W FG 
Sbjct: 49  GNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVE-LYNFIWVHHPWAFGD 107
Query: 123 NWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGG 182
             C  +  L    + A+ LN+  +S+ RY AI  P    + MS  R   +I+ +W+ S  
Sbjct: 108 AGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASAL 167
Query: 183 ISFPAILWWRAVRNEEVPKNK------CPFTDS---KGYLIFSSTISFYLPLLVM 228
           ++ P +L+   ++N              P  D+   K  +  ++ +SF  P+LV+
Sbjct: 168 LAIP-MLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVI 221

>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At 3.35a Length = 520

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 595 KTLGIVMGVFIVCWLPFFVVNLLSAVC--TKCFWSEQDEELISAVVTWLGWINSGMNPVI 652
           KT+ IV+ VFI CW P F++ LL   C    C    + E  +      L  +NSG NP+I
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLV-----LAVLNSGTNPII 475
Query: 653 YACWSRDFRR 662
           Y   +++ RR
Sbjct: 476 YTLTNKEMRR 485

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	662
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	1e-112
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-37
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-110
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	6e-36
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	4e-90
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	2e-21
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	5e-21
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	1e-15
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	2e-89
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	1e-22
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	3e-22
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	4e-15
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-87
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-22
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	5e-22
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	1e-14
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	5e-87
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	3e-23
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	7e-23
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	1e-13
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	7e-82
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	1e-25
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-25
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-11
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	1e-80
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	7e-20
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-19
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	1e-11
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	8e-61
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	9e-23
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	3e-22
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	4e-06
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	4e-40
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-11
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	3e-11
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	3e-37
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-04
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	5e-36
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-06
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	4e-06
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	2e-35
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	4e-11
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	9e-11
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	3e-34
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	1e-12
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	3e-12
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	6e-33
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	3e-06
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	6e-06
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score =  344 bits (884), Expect = e-112
 Identities = 92/418 (22%), Positives = 154/418 (36%), Gaps = 47/418 (11%)

Query: 26  IDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTS 85
               +    F      +         ++ ++     +++ + GN LV  AV     L   
Sbjct: 6   ALSYIFCLVFADYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNV 65

Query: 86  TNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCV 145
           TNYF++SLA AD  VG++ +PF+         +    + C       ++ + +SI +L  
Sbjct: 66  TNYFVVSLAAADIAVGVLAIPFAITIST---GFCAACHGCLFIACFVLVLTQSSIFSLLA 122

Query: 146 ISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCP 205
           I++DRY AI  PL Y   ++  RA   IAI W+ S  I    +L W      +  KN   
Sbjct: 123 IAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQ 182

Query: 206 -------------FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQ 252
                               + F+      +PLL+M+  Y +I+ AA  Q   L+   + 
Sbjct: 183 GCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWET 242

Query: 253 VMSGSTSGEKELTLRIHRGGTDHRHMTL------------HHTPSDDVEMDNVMSGHNGI 300
           +       EK       +                        +P      D        +
Sbjct: 243 LNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILV 302

Query: 301 TRQVSNTRIIHKGHI----------------VKNFSLSRKLSKFAKEKKAAKTLGIVMGV 344
            +     ++ ++G +                     L R  S   KE  AAK+L I++G+
Sbjct: 303 GQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGL 362

Query: 345 FIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           F +CWLP  ++N  +  C  C  +      +  +   L   NS +NP IYA   R+FR
Sbjct: 363 FALCWLPLHIINCFTFFCPDCSHA---PLWLMYLAIVLSHTNSVVNPFIYAYRIREFR 417

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score =  144 bits (363), Expect = 2e-37
 Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 45/276 (16%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCP-------------FTDSKGYLIF 474
             +I++C+ V +  +    +L W      +  KN                       + F
Sbjct: 147 KGIIAICW-VLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYF 205

Query: 475 SSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDH 534
           +      +PLL+M+  Y +I+ AA  Q   L+   + +       EK       +     
Sbjct: 206 NFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTK 265

Query: 535 RHMTL------------HHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHI-------- 574
                              +P      D        + +     ++ ++G +        
Sbjct: 266 MRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAE 325

Query: 575 --------VKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW 626
                        L R  S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C  
Sbjct: 326 QLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH 385

Query: 627 SEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
           +      +  +   L   NS +NP IYA   R+FR+
Sbjct: 386 A---PLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQ 418

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  342 bits (878), Expect = e-110
 Identities = 128/392 (32%), Positives = 178/392 (45%), Gaps = 63/392 (16%)

Query: 17  NSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAV 76
             S W     +            T + +         +   +SL  L  VFGN LV+ A+
Sbjct: 148 AKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAI 207

Query: 77  VRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFS 136
            +   L T TNYFI SLA AD ++GL V+PF A + L    W FG  WC+ W S+DVL  
Sbjct: 208 AKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT-WTFGNFWCEFWTSIDVLCV 266

Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISF-PAILWWRAVR 195
           TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF P  + W    
Sbjct: 267 TASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRAT 326

Query: 196 NEEVPK-----NKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGT 250
           ++E          C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  Q + +    
Sbjct: 327 HQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI---- 382

Query: 251 KQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRII 310
                                  D      H      VE D                   
Sbjct: 383 -----------------------DKSEGRFHVQNLSQVEQDGRTGHGL------------ 407

Query: 311 HKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 370
                       R      KE KA KTLGI+MG F +CWLPFF+VN++  +       E 
Sbjct: 408 -----------RRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE- 455

Query: 371 DEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
               +  ++ W+G++NSG NP+IY   S DFR
Sbjct: 456 ----VYILLNWIGYVNSGFNPLIYC-RSPDFR 482

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  141 bits (356), Expect = 6e-36
 Identities = 64/240 (26%), Positives = 96/240 (40%), Gaps = 61/240 (25%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPK-----NKCPFTDSKGYLIFSSTISFYL 482
            V+I + + V+ L    P  + W    ++E          C F  ++ Y I SS +SFY+
Sbjct: 300 RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYV 359

Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHT 542
           PL++MVF Y ++++ A  Q + +                           D      H  
Sbjct: 360 PLVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQ 392

Query: 543 PSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMG 602
               VE D                               R      KE KA KTLGI+MG
Sbjct: 393 NLSQVEQDGRTGHGL-----------------------RRSSKFCLKEHKALKTLGIIMG 429

Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
            F +CWLPFF+VN++  +       E     +  ++ W+G++NSG NP+IY   S DFR 
Sbjct: 430 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIYC-RSPDFRI 483

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score =  288 bits (738), Expect = 4e-90
 Identities = 92/321 (28%), Positives = 145/321 (45%), Gaps = 12/321 (3%)

Query: 10  NNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGN 69
            + D      N +   +           +  + +  +       +   +SL  L  VFGN
Sbjct: 3   KDDDAMGQPGNGSAFLLAP---NRSHAPDHDVTQQRDEVW-VVGMGIVMSLIVLAIVFGN 58

Query: 70  ALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWR 129
            LV+ A+ +   L T TNYFI SLA AD ++GL V+PF A + L+   W FG  WC+ W 
Sbjct: 59  VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWT 117

Query: 130 SLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISF-PAI 188
           S+DVL  TASI  LCVI++DRY+AIT P  Y S ++  +A + I +VWI SG  SF P  
Sbjct: 118 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 177

Query: 189 LWWRAVRNEEVPKN-----KCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT 243
           + W    ++E          C F  ++ Y I SS +SFY+PL++MVF Y ++++ A  Q 
Sbjct: 178 MHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQL 237

Query: 244 KSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQ 303
              ++             K+       G       +     +       +    NG+  +
Sbjct: 238 NIFEMLRIDEGL-RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITK 296

Query: 304 VSNTRIIHKGHIVKNFSLSRK 324
               ++ ++        + R 
Sbjct: 297 DEAEKLFNQDVDAAVRGILRN 317

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 97.5 bits (242), Expect = 2e-21
 Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 514 SGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 573
             +      + +    G T     T           D                    +  
Sbjct: 327 LDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVI 386

Query: 574 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEEL 633
                          KE KA KTLGI+MG F +CWLPFF+VN++  +           + 
Sbjct: 387 TTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-----KE 441

Query: 634 ISAVVTWLGWINSGMNPVIYACWSRDFRR 662
           +  ++ W+G++NSG NP+IY C S DFR 
Sbjct: 442 VYILLNWIGYVNSGFNPLIY-CRSPDFRI 469

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 95.9 bits (238), Expect = 5e-21
 Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 255 SGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 314
             +      + +    G T     T           D                    +  
Sbjct: 327 LDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVI 386

Query: 315 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEEL 374
                          KE KA KTLGI+MG F +CWLPFF+VN++  +           + 
Sbjct: 387 TTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-----KE 441

Query: 375 ISAVVTWLGWINSGMNPVIYACWSRDFR 402
           +  ++ W+G++NSG NP+IY C S DFR
Sbjct: 442 VYILLNWIGYVNSGFNPLIY-CRSPDFR 468

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 79.4 bits (195), Expect = 1e-15
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 6/161 (3%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKN-----KCPFTDSKGYLIFSSTISFYL 482
            V+I + + V+ L    P  + W    ++E          C F  ++ Y I SS +SFY+
Sbjct: 158 RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYV 217

Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHT 542
           PL++MVF Y ++++ A  Q    ++             K+       G       +    
Sbjct: 218 PLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGL-RLKIYKDTEGYYTIGIGHLLTKSPSLN 276

Query: 543 PSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRK 583
            +       +    NG+  +    ++ ++        + R 
Sbjct: 277 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRN 317

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score =  285 bits (731), Expect = 2e-89
 Identities = 79/268 (29%), Positives = 134/268 (50%), Gaps = 13/268 (4%)

Query: 50  QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSA 109
           +   +V      SLVT+ GN LVM+++   R+L T  NYF+ SLA AD ++G+  M    
Sbjct: 22  EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYT 81

Query: 110 LYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRA 169
           LY ++ + W  G   CD W +LD + S AS++NL +IS DRY+ +T PLTYP + +T+ A
Sbjct: 82  LYTVIGY-WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMA 140

Query: 170 YIWIAIVWICSGGISFPAILWWR---AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLL 226
            + IA  W+ S  +  PAIL+W+    VR  E  +    F  +      ++  +FYLP++
Sbjct: 141 GMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVI 200

Query: 227 VMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSD 286
           +M   Y+ I RA+  +    +             ++ L L+I++    +  + + H  + 
Sbjct: 201 IMTVLYWHISRASKSRINIFE---------MLRIDEGLRLKIYKDTEGYYTIGIGHLLTK 251

Query: 287 DVEMDNVMSGHNGITRQVSNTRIIHKGH 314
              ++   S  +    + +N  I     
Sbjct: 252 SPSLNAAKSELDKAIGRNTNGVITKDEA 279

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score =  100 bits (250), Expect = 1e-22
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 5/157 (3%)

Query: 506 KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 565
           K+        +      + +    G T     T           D               
Sbjct: 299 KLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQT 358

Query: 566 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 625
                +                ++EKK  +T+  ++  FI+ W P+ V+ L++  C  C 
Sbjct: 359 PNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI 418

Query: 626 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
                   +  +  WL +INS +NP  YA  +  F++
Sbjct: 419 -----PNTVWTIGYWLCYINSTINPACYALCNATFKK 450

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 99.0 bits (246), Expect = 3e-22
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 247 KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
           K+        +      + +    G T     T           D               
Sbjct: 299 KLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQT 358

Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
                +                ++EKK  +T+  ++  FI+ W P+ V+ L++  C  C 
Sbjct: 359 PNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI 418

Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
                   +  +  WL +INS +NP  YA  +  F+
Sbjct: 419 -----PNTVWTIGYWLCYINSTINPACYALCNATFK 449

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 77.1 bits (189), Expect = 4e-15
 Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 12/137 (8%)

Query: 440 LVLTAPAILWWR---AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYR 496
            +L APAIL+W+    VR  E  +    F  +      ++  +FYLP+++M   Y+ I R
Sbjct: 152 FILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISR 211

Query: 497 AAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGH 556
           A+  +    +             ++ L L+I++    +  + + H  +    ++   S  
Sbjct: 212 ASKSRINIFE---------MLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSEL 262

Query: 557 NGITRQVSNTRIIHKGH 573
           +    + +N  I     
Sbjct: 263 DKAIGRNTNGVITKDEA 279

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score =  280 bits (716), Expect = 2e-87
 Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 7/243 (2%)

Query: 50  QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSA 109
           Q   LV  LS   LVTV  N LV+ AV  ER LHT  N +I+SL++AD +VG VVMP + 
Sbjct: 7   QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNI 66

Query: 110 LYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRA 169
           LY L+   W  G   C  W S+D + STASI ++ ++ +DRY ++  PL Y    +  RA
Sbjct: 67  LYLLMSK-WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRA 125

Query: 170 YIWIAIVWICSGGISFPAILWWRAVRNEEVPKN---KCPFTDSKGYLIFSSTISFYLPLL 226
              I   W  S     P + W   ++   V +    +  F D   + + ++ I+FYLP L
Sbjct: 126 SATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTL 185

Query: 227 VMVFTYFKIYRAAVVQTKSL---KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHT 283
           +M++ Y KIY+A           ++     +      E   T+ I    T    +    +
Sbjct: 186 LMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS 245

Query: 284 PSD 286
             D
Sbjct: 246 ELD 248

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score =  100 bits (249), Expect = 2e-22
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 638
                     +E+KAAK LG +M  FI+CW+P+F+  ++ A C  C       E +    
Sbjct: 357 GTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCN-----EHLHMFT 411

Query: 639 TWLGWINSGMNPVIYACWSRDFRR 662
            WLG+INS +NP+IY   + +F++
Sbjct: 412 IWLGYINSTLNPLIYPLCNENFKK 435

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 98.6 bits (245), Expect = 5e-22
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 320 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 379
                     +E+KAAK LG +M  FI+CW+P+F+  ++ A C  C       E +    
Sbjct: 357 GTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCN-----EHLHMFT 411

Query: 380 TWLGWINSGMNPVIYACWSRDFR 402
            WLG+INS +NP+IY   + +F+
Sbjct: 412 IWLGYINSTLNPLIYPLCNENFK 434

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 75.5 bits (185), Expect = 1e-14
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKN---KCPFTDSKGYLIFSSTISFYLPL 484
              I   +   + +   P + W   ++   V +    +  F D   + + ++ I+FYLP 
Sbjct: 126 SATILGAW-FLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPT 184

Query: 485 LVMVFTYFKIYRAAVVQTKSL---KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHH 541
           L+M++ Y KIY+A           ++     +      E   T+ I    T    +    
Sbjct: 185 LLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAK 244

Query: 542 TPSD 545
           +  D
Sbjct: 245 SELD 248

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score =  279 bits (715), Expect = 5e-87
 Identities = 85/287 (29%), Positives = 130/287 (45%), Gaps = 16/287 (5%)

Query: 23  YIDIDD----DVVTYDFVSNFTLER----WLELAQQRTLLVSTLSLFSLVTVFGNALVMI 74
           Y D DD     +       N+T           A+       +     L  VFGN LV +
Sbjct: 2   YKDDDDGAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCM 61

Query: 75  AVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVL 134
           AV++ER L T+TNY ++SLA+AD LV  +VMP+    E+    W F    CD + +LDV+
Sbjct: 62  AVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVM 121

Query: 135 FSTASILNLCVISLDRYWAITDPLTYP---SRMSTRRAYIWIAIVWICSGGISFPAILWW 191
             TASI NLC IS+DRY A+  P+ Y     + S RR  + I  VW+ +  +S P +  +
Sbjct: 122 MCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGF 181

Query: 192 RAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTK 251
               +  V    C  ++   ++I+SS +SFYLP  V V  Y +IY     + +       
Sbjct: 182 NTTGDPTV----CSISN-PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEML 236

Query: 252 QVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHN 298
           ++  G      + T   +  G  H         +   E+D  +  + 
Sbjct: 237 RIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNT 283

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score =  102 bits (256), Expect = 3e-23
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 638
                     +EKKA + + IV+G FIVCWLPFF+ ++L+  C  C  S +    + +  
Sbjct: 385 GTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPE----LYSAT 440

Query: 639 TWLGWINSGMNPVIYACWSRDFRR 662
           TWLG++NS +NPVIY  ++ +FR+
Sbjct: 441 TWLGYVNSALNPVIYTTFNIEFRK 464

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score =  101 bits (252), Expect = 7e-23
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 4/84 (4%)

Query: 320 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 379
                     +EKKA + + IV+G FIVCWLPFF+ ++L+  C  C  S +    + +  
Sbjct: 385 GTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPE----LYSAT 440

Query: 380 TWLGWINSGMNPVIYACWSRDFRS 403
           TWLG++NS +NPVIY  ++ +FR 
Sbjct: 441 TWLGYVNSALNPVIYTTFNIEFRK 464

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 72.9 bits (178), Expect = 1e-13
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVM 487
            ++I+  + V    ++ P +  +    +  V    C  ++   ++I+SS +SFYLP  V 
Sbjct: 160 ALMITAVW-VLAFAVSCPLLFGFNTTGDPTV----CSISN-PDFVIYSSVVSFYLPFGVT 213

Query: 488 VFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDV 547
           V  Y +IY     + +       ++  G      + T   +  G  H         +   
Sbjct: 214 VLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS 273

Query: 548 EMDNVMSGHN 557
           E+D  +  + 
Sbjct: 274 ELDKAIGRNT 283

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score =  266 bits (681), Expect = 7e-82
 Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 19/253 (7%)

Query: 50  QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSA 109
             ++ ++     +++ + GN LV  AV     L   TNYF++SLA AD  VG++ +PF+ 
Sbjct: 20  GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI 79

Query: 110 LYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRA 169
                   +    + C       ++ + +SI +L  I++DRY AI  PL Y   ++  RA
Sbjct: 80  TIST---GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRA 136

Query: 170 YIWIAIVWICSGGISFPAILWWRAVRNEEVPKNK----------CPFTDS---KGYLIFS 216
              IAI W+ S  I    +L W      +  KN           C F D       + F+
Sbjct: 137 KGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFN 196

Query: 217 STISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSG---EKELTLRIHRGGT 273
                 +PLL+M+  Y +I+ AA  Q    ++               E   T+ I    T
Sbjct: 197 FFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT 256

Query: 274 DHRHMTLHHTPSD 286
               +    +  D
Sbjct: 257 KSPSLNAAKSELD 269

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score =  110 bits (275), Expect = 1e-25
 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 4/149 (2%)

Query: 514 SGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 573
           +   +    +  ++   G      +L        +   V    +    Q  N R      
Sbjct: 315 AVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPN-RAKRVIT 373

Query: 574 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEEL 633
             +  +     S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C         
Sbjct: 374 TFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC---SHAPLW 430

Query: 634 ISAVVTWLGWINSGMNPVIYACWSRDFRR 662
           +  +   L   NS +NP IYA   R+FR+
Sbjct: 431 LMYLAIVLSHTNSVVNPFIYAYRIREFRQ 459

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score =  108 bits (271), Expect = 3e-25
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 255 SGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 314
           +   +    +  ++   G      +L        +   V    +    Q  N R      
Sbjct: 315 AVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPN-RAKRVIT 373

Query: 315 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEEL 374
             +  +     S   KE  AAK+L I++G+F +CWLP  ++N  +  C  C         
Sbjct: 374 TFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC---SHAPLW 430

Query: 375 ISAVVTWLGWINSGMNPVIYACWSRDFR 402
           +  +   L   NS +NP IYA   R+FR
Sbjct: 431 LMYLAIVLSHTNSVVNPFIYAYRIREFR 458

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 17/134 (12%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNK----------CPFTDS---KGYLIF 474
             +I++C+ V +  +    +L W      +  KN           C F D       + F
Sbjct: 137 KGIIAICW-VLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYF 195

Query: 475 SSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSG---EKELTLRIHRGG 531
           +      +PLL+M+  Y +I+ AA  Q    ++               E   T+ I    
Sbjct: 196 NFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 255

Query: 532 TDHRHMTLHHTPSD 545
           T    +    +  D
Sbjct: 256 TKSPSLNAAKSELD 269

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score =  257 bits (658), Expect = 1e-80
 Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 7/213 (3%)

Query: 49  QQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFS 108
           Q    +   ++L  L+ V GN LV+ A+   + L T TN FI SLA AD +VGL+V+PF 
Sbjct: 9   QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFG 68

Query: 109 ALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRR 168
           A   +    W++G   C+ W SLDVL  TASI  LCVI++DRY AIT P  Y S M+  R
Sbjct: 69  ATLVVRGT-WLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR 127

Query: 169 AYIWIAIVWICSGGISFPAIL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFY 222
           A + I  VW  S  +SF  I+  WWR    + +        C F  ++ Y I SS ISFY
Sbjct: 128 AKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFY 187

Query: 223 LPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMS 255
           +PLL+M+F   ++YR A  Q + +   +K+  S
Sbjct: 188 IPLLIMIFVALRVYREAKEQIRKIDRASKRKTS 220

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 89.8 bits (223), Expect = 7e-20
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 570 HKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 629
               I +            +E KA KTLGI+MGVF +CWLPFF+VN+++           
Sbjct: 207 QIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLV---- 262

Query: 630 DEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
             + +     WLG+ NS MNP+IY   S DFR+
Sbjct: 263 -PDWLFVAFNWLGYANSAMNPIIYC-RSPDFRK 293

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 311 HKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 370
               I +            +E KA KTLGI+MGVF +CWLPFF+VN+++           
Sbjct: 207 QIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLV---- 262

Query: 371 DEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
             + +     WLG+ NS MNP+IY   S DFR 
Sbjct: 263 -PDWLFVAFNWLGYANSAMNPIIYC-RSPDFRK 293

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKN-----KCPFTDSKGYLIFSSTISFYL 482
            V+I   + ++ LV   P ++ W    + +  K       C F  ++ Y I SS ISFY+
Sbjct: 129 KVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYI 188

Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMS 514
           PLL+M+F   ++YR A  Q + +   +K+  S
Sbjct: 189 PLLIMIFVALRVYREAKEQIRKIDRASKRKTS 220

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score =  211 bits (537), Expect = 8e-61
 Identities = 51/274 (18%), Positives = 94/274 (34%), Gaps = 9/274 (3%)

Query: 15  FSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMI 74
              SS   Y++ D  V  Y++     +    E      L      L     +  N  V++
Sbjct: 29  AHRSSVSDYVNYDIIVRHYNYTGKLNISADKE--NSIKLTSVVFILICCFIILENIFVLL 86

Query: 75  AVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVL 134
            + + +  H    YFI +LAL+D L G+       L       +               +
Sbjct: 87  TIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGA--TTYKLTPAQWFLREGSMFV 144

Query: 135 FSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAV 194
             +AS+ +L  I+++RY  +       +  +  R ++ I+  W+ S  +    I+ W  +
Sbjct: 145 ALSASVFSLLAIAIERYITMLKMK-LHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI 203

Query: 195 RNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKI--YRAAVVQTKSLKVGTKQ 252
                          K Y++F  T  F L LL +V  Y +I          + L++    
Sbjct: 204 SALSSCST-VLPLYHKHYILF-CTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGL 261

Query: 253 VMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSD 286
            +      E   T+ I    T    +    +  D
Sbjct: 262 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELD 295

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score =  101 bits (252), Expect = 9e-23
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 4/142 (2%)

Query: 521 KELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSL 580
             +  ++   G      +L        +   V    +    Q  N               
Sbjct: 348 INMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTW- 406

Query: 581 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
               S+ ++     KT+ IV+ VFI CW P F++ LL   C        D    +     
Sbjct: 407 DAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVK---TCDILFRAEYFLV 463

Query: 641 LGWINSGMNPVIYACWSRDFRR 662
           L  +NSG NP+IY   +++ RR
Sbjct: 464 LAVLNSGTNPIIYTLTNKEMRR 485

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score =   99 bits (248), Expect = 3e-22
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 4/141 (2%)

Query: 262 KELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSL 321
             +  ++   G      +L        +   V    +    Q  N               
Sbjct: 348 INMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTW- 406

Query: 322 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 381
               S+ ++     KT+ IV+ VFI CW P F++ LL   C        D    +     
Sbjct: 407 DAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVK---TCDILFRAEYFLV 463

Query: 382 LGWINSGMNPVIYACWSRDFR 402
           L  +NSG NP+IY   +++ R
Sbjct: 464 LAVLNSGTNPIIYTLTNKEMR 484

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVM 487
            +LIS C+ V +L+L    I+ W  +               K Y++F  T  F L LL +
Sbjct: 179 FLLISACW-VISLILGGLPIMGWNCISALSSCST-VLPLYHKHYILFC-TTVFTLLLLSI 235

Query: 488 VFTYFKI--YRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSD 545
           V  Y +I          + L++     +      E   T+ I    T    +    +  D
Sbjct: 236 VILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELD 295

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  149 bits (379), Expect = 4e-40
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 22  TYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERY 81
             + +D D+      +     ++++ A Q  L  +  ++  + +V GN +VM  ++  + 
Sbjct: 3   NVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKR 62

Query: 82  LHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASIL 141
           + T TNYF+++LA A+  +       +  Y + +  W +GL +C       +    ASI 
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE-WYYGLFYCKFHNFFPIAAVFASIY 121

Query: 142 NLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNE---- 197
           ++  ++ DRY AI  PL    R+S     + I ++W+ +  ++FP   +           
Sbjct: 122 SMTAVAFDRYMAIIHPLQ--PRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVV 179

Query: 198 --EVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYR 237
                         K Y I  + + ++LPLLV+ + Y  +  
Sbjct: 180 CMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGI 221

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 566 TRIIHK--GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTK 623
           T +        +   S  R   + + ++K  K + +V+  F +CWLPF +  LL  +   
Sbjct: 217 TVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPD 276

Query: 624 CFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
            +  +   + +   + WL   ++  NP+IY C +  FR 
Sbjct: 277 LYLKKF-IQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRL 314

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 307 TRIIHK--GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTK 364
           T +        +   S  R   + + ++K  K + +V+  F +CWLPF +  LL  +   
Sbjct: 217 TVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPD 276

Query: 365 CFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
            +  +   + +   + WL   ++  NP+IY C +  FR
Sbjct: 277 LYLKKF-IQQVYLAIMWLAMSSTMYNPIIYCCLNDRFR 313

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score =  143 bits (362), Expect = 3e-37
 Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 52  TLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALY 111
             L   + +  ++   GN +V+    + + L T  N FI++LA +D    LV        
Sbjct: 35  YSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTI 94

Query: 112 ELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYI 171
                 WIFG   C  +  +  +F   SI+ + +IS+DRY  I  P+    +MS RRA+I
Sbjct: 95  SCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI 154

Query: 172 WIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPF------TDSKGYLIFSSTISFYLPL 225
            I  VW+ S   +   I  W A   E V  N C F      + ++  ++    + F+ P+
Sbjct: 155 MIIFVWLWSVLWAIGPIFGWGAYTLEGVLCN-CSFDYISRDSTTRSNILCMFILGFFGPI 213

Query: 226 LVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHR 270
           L++ F YF I  +     K +    K+ ++     + +       
Sbjct: 214 LIIFFCYFNIVMSVSNHEKEMAAMAKR-LNAKELRKAQAGANAEM 257

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 638
            L +  +    E + AK   +++  F++ W P+ VV LL+      + +       + + 
Sbjct: 245 ELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT----PYAAQLP 300

Query: 639 TWLGWINSGMNPVIYACWSRDFRR 662
                 ++  NP+IY+     FR 
Sbjct: 301 VMFAKASAIHNPMIYSVSHPKFRE 324

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 320 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 379
            L +  +    E + AK   +++  F++ W P+ VV LL+      + +       + + 
Sbjct: 245 ELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT----PYAAQLP 300

Query: 380 TWLGWINSGMNPVIYACWSRDFR 402
                 ++  NP+IY+     FR
Sbjct: 301 VMFAKASAIHNPMIYSVSHPKFR 323

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 429 VLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPF------TDSKGYLIFSSTISFYL 482
            ++ +  ++ +++     I  W A   E V  N C F      + ++  ++    + F+ 
Sbjct: 153 FIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCN-CSFDYISRDSTTRSNILCMFILGFFG 211

Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHR 529
           P+L++ F YF I  +     K +    K+ ++     + +       
Sbjct: 212 PILIIFFCYFNIVMSVSNHEKEMAAMAKR-LNAKELRKAQAGANAEM 257

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score =  137 bits (348), Expect = 5e-36
 Identities = 46/234 (19%), Positives = 100/234 (42%), Gaps = 20/234 (8%)

Query: 13  DFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALV 72
           +F+   SN T +        ++    +  E W     Q ++L + + L  ++    N L 
Sbjct: 9   NFYVPFSNKTGVVRSP----FEAPQYYLAEPW-----QFSMLAAYMFLLIMLGFPINFLT 59

Query: 73  MIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLD 132
           +   V+ + L T  NY +++LA+AD  +       +    L    ++FG   C+      
Sbjct: 60  LYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH-GYFVFGPTGCNLEGFFA 118

Query: 133 VLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWR 192
            L    ++ +L V++++RY  +  P+    R     A + +A  W+ +   + P ++ W 
Sbjct: 119 TLGGEIALWSLVVLAIERYVVVCKPM-SNFRFGENHAIMGVAFTWVMALACAAPPLVGWS 177

Query: 193 AVRNEEVPKNKC--------PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRA 238
               E + +  C          T+++ ++I+   + F +PL+V+ F Y ++   
Sbjct: 178 RYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFT 230

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 590 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN 649
           EK+  + + I++  F++CWLP+  V           +      +   +  +    ++  N
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG----PIFMTIPAFFAKTSAVYN 303

Query: 650 PVIYACWSRDFRR 662
           PVIY   ++ FR 
Sbjct: 304 PVIYIMMNKQFRN 316

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN 390
           EK+  + + I++  F++CWLP+  V           +      +   +  +    ++  N
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG----PIFMTIPAFFAKTSAVYN 303

Query: 391 PVIYACWSRDFRS 403
           PVIY   ++ FR+
Sbjct: 304 PVIYIMMNKQFRN 316

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score =  138 bits (350), Expect = 2e-35
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 7/192 (3%)

Query: 51  RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSAL 110
              +++  S+  +V +FGN LVM  +VR   + T+TN +I +LALAD  +    +PF ++
Sbjct: 17  AITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSV 75

Query: 111 YELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAY 170
             L+   W FG   C    S+D      SI  LC +S+DRY A+  P+      + R A 
Sbjct: 76  NYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAK 134

Query: 171 IWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDS-----KGYLIFSSTISFYLPL 225
           I     WI S  I  P +        +        F+           I     +F +P+
Sbjct: 135 IVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPV 194

Query: 226 LVMVFTYFKIYR 237
           L++   Y  +  
Sbjct: 195 LIITVCYGLMIL 206

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 567 RIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW 626
           R+I         +  +  +     ++  + + +V+ VFIVCW P  +  ++ A+ T    
Sbjct: 359 RVITTFRTGTWDAYEKDRNL----RRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPET 414

Query: 627 SEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
           + Q   +       LG+ NS +NPV+YA    +F+R
Sbjct: 415 TFQT--VSWHFCIALGYTNSCLNPVLYAFLDENFKR 448

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 63.5 bits (154), Expect = 9e-11
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 308 RIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW 367
           R+I         +  +  +     ++  + + +V+ VFIVCW P  +  ++ A+ T    
Sbjct: 359 RVITTFRTGTWDAYEKDRNL----RRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPET 414

Query: 368 SEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
           + Q   +       LG+ NS +NPV+YA    +F+
Sbjct: 415 TFQT--VSWHFCIALGYTNSCLNPVLYAFLDENFK 447

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score =  131 bits (332), Expect = 6e-33
 Identities = 46/234 (19%), Positives = 96/234 (41%), Gaps = 7/234 (2%)

Query: 10  NNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTL-SLFSLVTVFG 68
           ++       S +T  +  +++ + D+ S        E A    + + T+ S+  L  + G
Sbjct: 6   DDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVG 65

Query: 69  NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSW 128
           N LV++ +  ++ L + T+ + + L++AD L  ++ +PF A+  +   NW FG   C + 
Sbjct: 66  NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAV--ANWYFGNFLCKAV 122

Query: 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAI 188
             +  +   +S+  L  ISLDRY AI                +    VWI +  ++ P  
Sbjct: 123 HVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182

Query: 189 LWWRAVRNEEVPKNKCPFTDS---KGYLIFSSTISFYLPLLVMVFTYFKIYRAA 239
           ++      ++       + +      +      +   LP +V++  Y  I    
Sbjct: 183 IFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKL 236

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 590 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC------TKCFWSEQDEELISAVVTWLGW 643
           ++KA KT  I++  F  CWLP+++   + +          C +     + IS +   L +
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-ITEALAF 466

Query: 644 INSGMNPVIYACWSRDFRR 662
            +  +NP++YA     F+ 
Sbjct: 467 FHCCLNPILYAFLGAKFKT 485

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC------TKCFWSEQDEELISAVVTWLGW 384
           ++KA KT  I++  F  CWLP+++   + +          C +     + IS +   L +
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-ITEALAF 466

Query: 385 INSGMNPVIYACWSRDFRSK 404
            +  +NP++YA     F++ 
Sbjct: 467 FHCCLNPILYAFLGAKFKTS 486

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRR 168
           T+SI++LC ISLDRYW+IT  + Y  + + RR
Sbjct: 1   TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 80/580 (13%), Positives = 177/580 (30%), Gaps = 170/580 (29%)

Query: 154 ITDPLTYPSRMSTRRAYIWI------AIVWICSGGISFPAILW-WRAVRNEEVPKNKCPF 206
           I   +     +S      W        +V      +      +    ++ E     + P 
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPS 106

Query: 207 TDSKGYLIFSSTISFYLPLL--VMVFTYFKIYRAAVVQT-----KSLKVGTKQV---MSG 256
             ++ Y      I     L     VF  + + R             L+     +   + G
Sbjct: 107 MMTRMY------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 257 STSGEKELTLRIHRGGTDHRHMTLH---------HTPSDDVEMDNVMSGH---NGITRQV 304
           S  G+  + L +         M            ++P   +EM   +      N  +R  
Sbjct: 161 S--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 305 SNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIV-CWLPF----------- 352
            ++ I  + H ++      +L +  K K     L +++ V     W  F           
Sbjct: 219 HSSNIKLRIHSIQA-----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 353 --FVVNLLSAVCTKCFWSEQ------DEELISAVVTWLGWINS-------GMNP-VIYAC 396
              V + LSA  T     +        +E+ S ++ +L              NP  +   
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 397 WS--RDFRSK----EKILNHKISPVV-----FLLPMCMYPQY--LVLISLCYYVTTLVLT 443
               RD  +     + +   K++ ++      L P      +  L +     ++ T++L 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL- 392

Query: 444 APAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTK 503
             +++W+  ++++                           ++V+     K+++ ++V+  
Sbjct: 393 --SLIWFDVIKSD--------------------------VMVVVN----KLHKYSLVE-- 418

Query: 504 SLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQV 563
                 KQ         KE T+ I        ++ L     ++  +   +  H  I +  
Sbjct: 419 ------KQ--------PKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 564 SNTRII----------HKGHIVKNFSLSRKLSKFAK--------EKKAAKTLGIVMGVFI 605
            +  +I          H GH +KN     +++ F          E+K       +     
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDST 512

Query: 606 VCWLPFFVVNLLSAVCT-KCFWSEQD---EELISAVVTWL 641
                  ++N L  +   K +  + D   E L++A++ +L
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	662
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	100.0
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	100.0
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	100.0
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	100.0
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	100.0
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	100.0
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	100.0
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	100.0
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	100.0
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	100.0
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	100.0
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	100.0
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	100.0
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	100.0
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	100.0
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	100.0
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	100.0
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	100.0
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.93
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.88
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.87
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.85
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.85
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.84
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.84
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.83
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.83
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.83
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.81
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.81
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.8
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.8
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.8
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.79
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.79
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.77
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	98.5
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	98.3
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.29
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.14
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	97.56
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	96.11
2ket_A	27	Cathelicidin-6; antimicrobial peptide, antibiotic,	81.11

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=100.00  E-value=2.1e-46  Score=401.68  Aligned_cols=364  Identities=19%  Similarity=0.278  Sum_probs=236.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHhhhhheecccccc---chhhHHHHHHHHHHHhhhhhcccHHHHHhhc-cccccccccc
Q psy5093          49 QQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLH---TSTNYFIMSLALADCLVGLVVMPFSALYELL-DHNWIFGLNW  124 (662)
Q Consensus        49 ~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr---~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~-~~~~~~~~~~  124 (662)
                      ..++++.++|.+++++|++||+++++++.++|++|   +++|+|++|||++|++.+++.+|+.+...+. .+.|.+|+.+
T Consensus        30 ~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~  109 (510)
T 4grv_A           30 YSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAG  109 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHH
Confidence            34678888999999999999999999999887554   7889999999999999999999987776553 4679999999


Q ss_pred             hhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCC----
Q psy5093         125 CDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVP----  200 (662)
Q Consensus       125 C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~----  200 (662)
                      |++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++.+.........    
T Consensus       110 C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~  189 (510)
T 4grv_A          110 CRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPG  189 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987655433222    


Q ss_pred             CCccccCCC----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc-----cCCCCCCccc-------
Q psy5093         201 KNKCPFTDS----KGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVM-----SGSTSGEKEL-------  264 (662)
Q Consensus       201 ~~~c~~~~~----~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~-------  264 (662)
                      ...|.....    ..|..+..++.|++|+++++++|.+|++.++++.+.....+....     ..........       
T Consensus       190 ~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (510)
T 4grv_A          190 GLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT  269 (510)
T ss_dssp             GEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECC
T ss_pred             ccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccC
Confidence            223433332    235556677889999999999999999999875443221110000     0000000000       


Q ss_pred             ---eeeeccCCCCCCCCccCCCCCCcccccc------------ccc---------cCC----------------------
Q psy5093         265 ---TLRIHRGGTDHRHMTLHHTPSDDVEMDN------------VMS---------GHN----------------------  298 (662)
Q Consensus       265 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---------~~~----------------------  298 (662)
                         .........+..............+.+.            ...         ...                      
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (510)
T 4grv_A          270 KSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF  349 (510)
T ss_dssp             CSSSHHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCC
Confidence               0000000000000000000000000000            000         000                      


Q ss_pred             ---------Ccccccccccccccc-------------ccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHH
Q psy5093         299 ---------GITRQVSNTRIIHKG-------------HIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVN  356 (662)
Q Consensus       299 ---------~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~  356 (662)
                               .............+.             ..+.....+++++..++|+|++||+++++++|++||+|++++.
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~  429 (510)
T 4grv_A          350 TNSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRR  429 (510)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     000000000000000             0000111223334456789999999999999999999999999


Q ss_pred             HHHHhhccccCCC---chhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093         357 LLSAVCTKCFWSE---QDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI  412 (662)
Q Consensus       357 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~  412 (662)
                      ++..+.++.....   ....++..++.+|+|+||++||+||+++|++||+++|++++++
T Consensus       430 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~  488 (510)
T 4grv_A          430 LMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACL  488 (510)
T ss_dssp             HHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC--------
T ss_pred             HHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Confidence            9987765433221   1234566788999999999999999999999999999987543

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=372.39  Aligned_cols=372  Identities=17%  Similarity=0.160  Sum_probs=238.8

Q ss_pred             hhhHhHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhcccccccc
Q psy5093          42 ERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFG  121 (662)
Q Consensus        42 ~~~~~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~  121 (662)
                      ++.++.+....+..+++.+++++|++||+++++++.+++++|+++++|++|||++|++.++ .+|+.+...+..+.|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~-~~~~~~~~~~~~~~~~~~   89 (484)
T 3vw7_A           11 SGYLTSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS-VLPFKISYYFSGSDWQFG   89 (484)
T ss_dssp             HHHHTCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHTTSCCCSC
T ss_pred             ccCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccc
Confidence            3444566778889999999999999999999999999999999999999999999999965 477677777767789999


Q ss_pred             ccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCC
Q psy5093         122 LNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPK  201 (662)
Q Consensus       122 ~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~  201 (662)
                      ...|++..++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|++++++++|+++.+..........
T Consensus        90 ~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~  169 (484)
T 3vw7_A           90 SELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLGI  169 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEETTTTE
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998876655444455


Q ss_pred             CccccCCCcc--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccc-----CCCCCCccceeee
Q psy5093         202 NKCPFTDSKG--------YLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMS-----GSTSGEKELTLRI  268 (662)
Q Consensus       202 ~~c~~~~~~~--------~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  268 (662)
                      ..|.......        |..+..++.+++|+++++++|++|++.++++.++.+..+.....     ....+... ....
T Consensus       170 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-i~~~  248 (484)
T 3vw7_A          170 TTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEMLRIDEGLRLKIYKNTEGYYT-IGIG  248 (484)
T ss_dssp             EEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHCCEEEEEECTTSCEE-EETT
T ss_pred             ceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHHhhhhccchhhhhcccccccee-eecc
Confidence            5675443211        44556678899999999999999999999876533211110000     00000000 0000


Q ss_pred             ccCCCCCC-----------CCccCCCCCCccccccc----------cccCC-Ccccccccc-------------------
Q psy5093         269 HRGGTDHR-----------HMTLHHTPSDDVEMDNV----------MSGHN-GITRQVSNT-------------------  307 (662)
Q Consensus       269 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~-------------------  307 (662)
                      +.......           ...........++.+..          ..... .........                   
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  328 (484)
T 3vw7_A          249 HLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETG  328 (484)
T ss_dssp             EEEESSSCHHHHHHHHHHHHTSCCSSBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcchhcccccccccccccCCCCCCcccccccccccccccccccccccccCcccccccccccchhhccccccCccc
Confidence            00000000           00000000000000000          00000 000000000                   


Q ss_pred             ------------------ccccc-ccccccc--------------ccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHH
Q psy5093         308 ------------------RIIHK-GHIVKNF--------------SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFV  354 (662)
Q Consensus       308 ------------------~~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i  354 (662)
                                        ..... +......              ...++..+.++++|++|++++++++|++||+|+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icwlP~~i  408 (484)
T 3vw7_A          329 VAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYANRSKKSRALFLSAAVFCIFIICFGPTNV  408 (484)
T ss_dssp             HHTTHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             cccchhhhhhhhccchhhhhhhhhhhhhhccCcccccCccceeecchhccccchhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence                              00000 0000000              00001124567889999999999999999999999


Q ss_pred             HHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093         355 VNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV  415 (662)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~  415 (662)
                      +.++..+.............+..++.+|+++|+++||+||+++|++||+++++++|+.+..
T Consensus       409 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~~~~~  469 (484)
T 3vw7_A          409 LLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKESS  469 (484)
T ss_dssp             HHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC--------------
T ss_pred             HHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhhccCC
Confidence            9998866543333445556777889999999999999999999999999999977665443

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=100.00  E-value=5.9e-40  Score=351.39  Aligned_cols=358  Identities=34%  Similarity=0.560  Sum_probs=238.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhH
Q psy5093          48 AQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS  127 (662)
Q Consensus        48 ~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~  127 (662)
                      +....+..+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+++.+|+.+...+ .+.|.++...|++
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~-~~~w~~~~~~C~~  115 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL-MKMWTFGNFWCEF  115 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-HTSCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcCCcchhhH
Confidence            344567888999999999999999999999999999999999999999999999988997766554 5689999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHH-HhhhccccCC-----CCC
Q psy5093         128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAI-LWWRAVRNEE-----VPK  201 (662)
Q Consensus       128 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~-~~~~~~~~~~-----~~~  201 (662)
                      ..++..+...+|++++++||+|||++|++|++|++.++++++..+++++|+++++++++++ +.+.......     ...
T Consensus       116 ~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~~~~~~c~~~~  195 (500)
T 2rh1_A          116 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE  195 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeecccccCcceecccc
Confidence            9999999999999999999999999999999999999999999999999999999996544 3332221100     011


Q ss_pred             CccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc------cccCCCCC-----------Cccc
Q psy5093         202 NKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQ------VMSGSTSG-----------EKEL  264 (662)
Q Consensus       202 ~~c~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~------~~~~~~~~-----------~~~~  264 (662)
                      .+|.......|..+..++.+++|+++++++|++|++.++++.++.+..+..      ........           ....
T Consensus       196 ~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (500)
T 2rh1_A          196 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSL  275 (500)
T ss_dssp             TCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTCCEEEEEECTTSCEEEETTEEEESCSCH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCCCCCCCcccc
Confidence            122333445577777788899999999999999999999987651110000      00000000           0000


Q ss_pred             e----------eeeccCCCC-------------------------C-------------------C----------CCcc
Q psy5093         265 T----------LRIHRGGTD-------------------------H-------------------R----------HMTL  280 (662)
Q Consensus       265 ~----------~~~~~~~~~-------------------------~-------------------~----------~~~~  280 (662)
                      .          .+.+.+...                         .                   .          ....
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (500)
T 2rh1_A          276 NAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLR  355 (500)
T ss_dssp             HHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cccccccccccCCCCCCccchhhhhhcccCCccccccccccCCCCCCCCCcccccccchhhcccCCCCccccccccCchh
Confidence            0          000000000                         0                   0          0000


Q ss_pred             CCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy5093         281 HHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA  360 (662)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~  360 (662)
                      ........+..............+....   +..........++.+..++|+|++|++++++++|++||+|++++.++..
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~  432 (500)
T 2rh1_A          356 MLQQKRWDEAAVNLAKSRWYNQTPNRAK---RVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV  432 (500)
T ss_dssp             HHHTTCHHHHHHHHTTSHHHHHSHHHHH---HHHHHHHHSSSGGGTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccccccccccccCCCCcccc---cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000011000000000000000000000   0000000000111222347899999999999999999999999999887


Q ss_pred             hhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093         361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV  415 (662)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~  415 (662)
                      +..     ...+..+..+..+|+++|+++||+||++ |++||+++++++|+++..
T Consensus       433 ~~~-----~~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~~~~~  481 (500)
T 2rh1_A          433 IQD-----NLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSS  481 (500)
T ss_dssp             HST-----TSSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC----
T ss_pred             HcC-----CcccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhhhccC
Confidence            753     2335667888999999999999999985 999999999998766544

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=100.00  E-value=1.3e-41  Score=362.41  Aligned_cols=362  Identities=27%  Similarity=0.430  Sum_probs=246.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhH
Q psy5093          48 AQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS  127 (662)
Q Consensus        48 ~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~  127 (662)
                      .....+..+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+++.+|+.+.... .+.|.++...|++
T Consensus        20 ~~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~-~~~~~~~~~~C~~   98 (467)
T 3uon_A           20 TFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTV-IGYWPLGPVVCDL   98 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-SSSCCSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccCCcchHhH
Confidence            344677889999999999999999999999999999999999999999999999998997666554 5689999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcccc-CCCCCCcccc
Q psy5093         128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN-EEVPKNKCPF  206 (662)
Q Consensus       128 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-~~~~~~~c~~  206 (662)
                      ..++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|++++++++|+++.+..... .......|..
T Consensus        99 ~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  178 (467)
T 3uon_A           99 WLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYI  178 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccee
Confidence            999999999999999999999999999999999999999999999999999999999999888765422 2334445644


Q ss_pred             C--CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCC---CCCccceeeeccCCCCCCCC---
Q psy5093         207 T--DSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGST---SGEKELTLRIHRGGTDHRHM---  278 (662)
Q Consensus       207 ~--~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---  278 (662)
                      .  ....|..+..++.+++|+++++++|++|++.++++.++.+...........   ..........+.........   
T Consensus       179 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (467)
T 3uon_A          179 QFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAA  258 (467)
T ss_dssp             GGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHSCCEEEEEECTTSCEEEETTEECCCCSSHHHH
T ss_pred             ecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccccceeeccchhhcccccCcccccCCccccc
Confidence            3  344566777888899999999999999999999876543322111100000   00000000000000000000   


Q ss_pred             ---------ccCCCCCCcccccc------------ccccCCCccc--------------------------cc------c
Q psy5093         279 ---------TLHHTPSDDVEMDN------------VMSGHNGITR--------------------------QV------S  305 (662)
Q Consensus       279 ---------~~~~~~~~~~~~~~------------~~~~~~~~~~--------------------------~~------~  305 (662)
                               ..+.......+...            ...+......                          ..      +
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (467)
T 3uon_A          259 KSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQ  338 (467)
T ss_dssp             HHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred             ccccccccccCCCCcccccccccccccccchhhcccccCCCCCccccccccccccccccceeeccccCCCccccccchhh
Confidence                     00000000000000            0000000000                          00      0


Q ss_pred             ccc----ccc-cccc---cc-----------ccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhcccc
Q psy5093         306 NTR----IIH-KGHI---VK-----------NFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF  366 (662)
Q Consensus       306 ~~~----~~~-~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~  366 (662)
                      ..+    ... ....   ..           ........+..++++|+++++++++++|++||+|+.++.++..+...  
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~--  416 (467)
T 3uon_A          339 QKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP--  416 (467)
T ss_dssp             TTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST--
T ss_pred             hcCccccccccccccccCCCCcccccccchhhcccccccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--
Confidence            000    000 0000   00           00000111122478999999999999999999999999999877542  


Q ss_pred             CCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093         367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV  415 (662)
Q Consensus       367 ~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~  415 (662)
                         .....+..+..++.++|+++||+||+++|++||++++++++++++.
T Consensus       417 ---~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~~  462 (467)
T 3uon_A          417 ---CIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYKN  462 (467)
T ss_dssp             ---TSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC-----
T ss_pred             ---ccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhhccC
Confidence               2346778899999999999999999999999999999998665543

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=100.00  E-value=5.8e-42  Score=368.54  Aligned_cols=366  Identities=19%  Similarity=0.237  Sum_probs=246.0

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccch
Q psy5093          46 ELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWC  125 (662)
Q Consensus        46 ~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C  125 (662)
                      .....+.+..+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+ +.+|+.+....  ..|.++...|
T Consensus        43 ~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~--~~~~~~~~~C  119 (502)
T 3odu_A           43 NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV--ANWYFGNFLC  119 (502)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHH--TCCCSHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--cCCcCCchhh
Confidence            44556788999999999999999999999999999999999999999999999994 67887666554  3699999999


Q ss_pred             hHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccc
Q psy5093         126 DSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCP  205 (662)
Q Consensus       126 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~  205 (662)
                      ++..++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|++++++++|+++........  ....|.
T Consensus       120 ~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~--~~~~C~  197 (502)
T 3odu_A          120 KAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEAD--DRYICD  197 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEECS--SSEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHheeeeccC--CceEEe
Confidence            999999999999999999999999999999999999999999999999999999999999998876544322  344564


Q ss_pred             cCCCc-----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCcc----ceeee--ccCCCC
Q psy5093         206 FTDSK-----GYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKE----LTLRI--HRGGTD  274 (662)
Q Consensus       206 ~~~~~-----~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~  274 (662)
                      .....     .|.+...++.+++|+++++++|++|++.++++.++.+.........+......    .....  .....+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (502)
T 3odu_A          198 RFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSP  277 (502)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHHHHHHHTCCEEEEEECTTSCEEEETTEEEECSS
T ss_pred             ecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccccCCCccccccccccccCcCc
Confidence            33322     24445667788999999999999999999987665433221111110000000    00000  000000


Q ss_pred             CCCC-------ccCCCCC---Ccccccc----------ccccCCCcccc--cccc-------------------------
Q psy5093         275 HRHM-------TLHHTPS---DDVEMDN----------VMSGHNGITRQ--VSNT-------------------------  307 (662)
Q Consensus       275 ~~~~-------~~~~~~~---~~~~~~~----------~~~~~~~~~~~--~~~~-------------------------  307 (662)
                      ....       .......   ..++...          ...........  .+..                         
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (502)
T 3odu_A          278 SLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNS  357 (502)
T ss_dssp             CHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             cccccchhhhcccCcchhhhhhccccccchhhcccccccccccCccccccccCCCCCCcchhhhhhhhhchhhcccCccc
Confidence            0000       0000000   0000000          00000000000  0000                         


Q ss_pred             ---------------------------ccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy5093         308 ---------------------------RIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA  360 (662)
Q Consensus       308 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~  360 (662)
                                                 +........+....++...+.++++|+++++++++++|++||+|+.++.++..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~  437 (502)
T 3odu_A          358 LRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDS  437 (502)
T ss_dssp             HHHHHHTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhchhhhhccccccccccccCcchhhhccccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                                       00000000000001111234557899999999999999999999999998877


Q ss_pred             hhccccCC-----CchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCccc
Q psy5093         361 VCTKCFWS-----EQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVV  416 (662)
Q Consensus       361 ~~~~~~~~-----~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~~  416 (662)
                      +.......     ......+..++.+|.++|+++||+||+++|++||++++++++++++..
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~~~  498 (502)
T 3odu_A          438 FILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLE  498 (502)
T ss_dssp             HHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHHHHHSSCSSCG
T ss_pred             HHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHHHHHHhccCCchh
Confidence            64221111     223445567888999999999999999999999999999998877654

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=100.00  E-value=3.3e-41  Score=360.62  Aligned_cols=356  Identities=31%  Similarity=0.527  Sum_probs=240.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHH
Q psy5093          49 QQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSW  128 (662)
Q Consensus        49 ~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~  128 (662)
                      ....+..+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+++.+|+.+...+..+.|.++...|++.
T Consensus        36 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~  115 (481)
T 3pbl_A           36 RPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVF  115 (481)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhH
Confidence            34567788899999999999999999999999999999999999999999999999998777776667899999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC---CccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccc
Q psy5093         129 RSLDVLFSTASILNLCVISLDRYWAITDPLTY---PSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCP  205 (662)
Q Consensus       129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y---~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~  205 (662)
                      .++..++..+|.+++++||+|||++|++|++|   .+..+.+++..+++++|++++++++|+++.+...    .....|.
T Consensus       116 ~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~----~~~~~C~  191 (481)
T 3pbl_A          116 VTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTT----GDPTVCS  191 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCC----SSTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHheeccc----CCCCccc
Confidence            99999999999999999999999999999998   6788999999999999999999999988865432    2334565


Q ss_pred             cCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCC
Q psy5093         206 FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPS  285 (662)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (662)
                      .. ...|..+..++.+++|+++++++|+.|++.++++.++..........................  ...+........
T Consensus       192 ~~-~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  268 (481)
T 3pbl_A          192 IS-NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTI--GIGHLLTKSPSL  268 (481)
T ss_dssp             CC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCSSCEECSSSCEEE--TTTEEEESSSCH
T ss_pred             cc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhccccccCcccceee--cccccccCCccc
Confidence            44 334667778888999999999999999999998765433221111100000000000000000  000000000000


Q ss_pred             Cccc--ccccc-ccCCCccc-cc---------------------------------------------------------
Q psy5093         286 DDVE--MDNVM-SGHNGITR-QV---------------------------------------------------------  304 (662)
Q Consensus       286 ~~~~--~~~~~-~~~~~~~~-~~---------------------------------------------------------  304 (662)
                      ....  .+... .+.++... ..                                                         
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (481)
T 3pbl_A          269 NAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLR  348 (481)
T ss_dssp             HHHHHHHHHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccCCCcccchhccCCCceeccCCchhcccCCcccccccccccCccCccccccccccchhccccccccCCCCCCCcccccc
Confidence            0000  00000 00000000 00                                                         


Q ss_pred             --cccc-----ccccccccccc--------------ccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhc
Q psy5093         305 --SNTR-----IIHKGHIVKNF--------------SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCT  363 (662)
Q Consensus       305 --~~~~-----~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~  363 (662)
                        ...+     .........+.              ...+.....++++|+++++++++++|++||+|+.+..++..+.+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~  428 (481)
T 3pbl_A          349 MLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQ  428 (481)
T ss_dssp             HHHTTCHHHHHHHHHTSHHHHHSHHHHHHHHHHHHHSSSTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred             hhccccccccchhhhccccccCCcccccccceeecccccccccccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Confidence              0000     00000000000              00011112236899999999999999999999999999887654


Q ss_pred             cccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093         364 KCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV  415 (662)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~  415 (662)
                      .    ......+..+..+|.++|+++||+||+++|++||++++++++++++.
T Consensus       429 ~----~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~~  476 (481)
T 3pbl_A          429 T----CHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGRPL  476 (481)
T ss_dssp             S----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC----
T ss_pred             c----ccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhccCcH
Confidence            2    23456677889999999999999999999999999999998765544

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=100.00  E-value=9.1e-41  Score=354.26  Aligned_cols=362  Identities=30%  Similarity=0.435  Sum_probs=238.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHH
Q psy5093          50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWR  129 (662)
Q Consensus        50 ~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~  129 (662)
                      ...++.+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+++.+|+.+.... .+.|.++...|++..
T Consensus         7 ~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~-~~~~~~~~~~C~~~~   85 (452)
T 3rze_A            7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL-MSKWSLGRPLCLFWL   85 (452)
T ss_dssp             --CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHH-SSSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccCCchhHhHHH
Confidence            3456778899999999999999999999999999999999999999999999999997766554 568999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcccc-CCCCCCcccc--
Q psy5093         130 SLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN-EEVPKNKCPF--  206 (662)
Q Consensus       130 ~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-~~~~~~~c~~--  206 (662)
                      ++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|++++++++|.+........ .......|..  
T Consensus        86 ~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~  165 (452)
T 3rze_A           86 SMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDF  165 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC-------CCSSSSCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCeecCCC
Confidence            9999999999999999999999999999999999999999999999999999999885543222111 1123445533  


Q ss_pred             CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCC----CCCCccceeeeccCCCCCCCC----
Q psy5093         207 TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGS----TSGEKELTLRIHRGGTDHRHM----  278 (662)
Q Consensus       207 ~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----  278 (662)
                      .....|..+..++.+++|+++++++|+.|++.++++.++.+..........    ...........+.........    
T Consensus       166 ~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (452)
T 3rze_A          166 YDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS  245 (452)
T ss_dssp             TTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHCEEEEEEECTTSCEEEEETEECSSCSSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhhhhcccCCcccccccccccccCCCCCcccc
Confidence            334456677788889999999999999999999876554322111100000    000000000000000000000    


Q ss_pred             -------ccCCCCCCccccccc------------cccCCCcccc----------------------ccccc---------
Q psy5093         279 -------TLHHTPSDDVEMDNV------------MSGHNGITRQ----------------------VSNTR---------  308 (662)
Q Consensus       279 -------~~~~~~~~~~~~~~~------------~~~~~~~~~~----------------------~~~~~---------  308 (662)
                             .........+.....            ..........                      .++..         
T Consensus       246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (452)
T 3rze_A          246 ELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQK  325 (452)
T ss_dssp             HHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHTT
T ss_pred             cccCCCCCCCCccccCCcccchhcCCCcccccCcccccccCCcccCCCccccccccccccccCCCCCCccccCcchhhhc
Confidence                   000000000000000            0000000000                      00000         


Q ss_pred             ---------ccccccccc-----------ccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCC
Q psy5093         309 ---------IIHKGHIVK-----------NFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWS  368 (662)
Q Consensus       309 ---------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~  368 (662)
                               .........           .....++..+.++++|+++++++++++|++||+|+.++.++..+.+..   
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~---  402 (452)
T 3rze_A          326 RWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC---  402 (452)
T ss_dssp             CHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred             CCccccccccCCccCCCCCcccchhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc---
Confidence                     000000000           000111112345889999999999999999999999999998876532   


Q ss_pred             CchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcccc
Q psy5093         369 EQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVF  417 (662)
Q Consensus       369 ~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~~~  417 (662)
                        ....+..+..+|.++|+++||+||+++|++||+++++++++++....
T Consensus       403 --~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~~~~  449 (452)
T 3rze_A          403 --CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGENL  449 (452)
T ss_dssp             --SCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC------
T ss_pred             --ccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhcccccc
Confidence              23445568889999999999999999999999999999887765543

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=100.00  E-value=2.2e-40  Score=355.05  Aligned_cols=362  Identities=24%  Similarity=0.344  Sum_probs=244.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHH
Q psy5093          49 QQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSW  128 (662)
Q Consensus        49 ~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~  128 (662)
                      ....+..+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+++.+|+.+...   ..|..+...|++.
T Consensus        19 ~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~---~~~~~~~~~C~~~   95 (488)
T 3eml_A           19 MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS---TGFCAACHGCLFI   95 (488)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT---TCCEECHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccccchHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999899766543   2678889999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccC---CCCCCccc
Q psy5093         129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNE---EVPKNKCP  205 (662)
Q Consensus       129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~---~~~~~~c~  205 (662)
                      .++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|++++++++|+++.+......   ......|.
T Consensus        96 ~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~c~  175 (488)
T 3eml_A           96 ACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCG  175 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC-------CCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999877654332   12223343


Q ss_pred             cCC----------CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccC-----CCCCCcc-ceeeec
Q psy5093         206 FTD----------SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSG-----STSGEKE-LTLRIH  269 (662)
Q Consensus       206 ~~~----------~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~  269 (662)
                      ...          ...+..+..++.+++|+++++++|++|++.++++.++.+.........     ...+... ......
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (488)
T 3eml_A          176 EGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL  255 (488)
T ss_dssp             TTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCEEEEEECTTSCEEEETTEEE
T ss_pred             cccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccccccchhhccccccceeccccccC
Confidence            322          122444557788999999999999999999998766543221110000     0000000 000000


Q ss_pred             cCCCC---------CCCCccCCCCCCcccccc----cc-cc------CCCccc--------------------------c
Q psy5093         270 RGGTD---------HRHMTLHHTPSDDVEMDN----VM-SG------HNGITR--------------------------Q  303 (662)
Q Consensus       270 ~~~~~---------~~~~~~~~~~~~~~~~~~----~~-~~------~~~~~~--------------------------~  303 (662)
                      .....         .............++.+.    .. ..      ......                          .
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (488)
T 3eml_A          256 TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAG  335 (488)
T ss_dssp             ESSSCHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHCHHHHTT
T ss_pred             CCCccccccccccccCCCCCCCCCCChhhhccCcccCccccccccCCCCCCCCCcCCcchHHHhhhhccccCCCCCCccC
Confidence            00000         000000000000000000    00 00      000000                          0


Q ss_pred             c---------------------------cccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHH
Q psy5093         304 V---------------------------SNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVN  356 (662)
Q Consensus       304 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~  356 (662)
                      .                           ...+........++........+.++++|+++++++++++|++||+|+.++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~icw~P~~i~~  415 (488)
T 3eml_A          336 FTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIIN  415 (488)
T ss_dssp             CHHHHHHHHTTCHHHHHHHHTTSHHHHHCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhhccccccccCcccccCcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            0                           0000000000000000112223356899999999999999999999999999


Q ss_pred             HHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCccc
Q psy5093         357 LLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVV  416 (662)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~~  416 (662)
                      ++..+.++.   .....++..+..+++++|+++||+||+++|++||++++++++++.++.
T Consensus       416 ~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~~~~~  472 (488)
T 3eml_A          416 CFTFFCPDC---SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ  472 (488)
T ss_dssp             HHHHHCTTS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTSCC
T ss_pred             HHHhccCcc---ccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhccccc
Confidence            998876542   344566778899999999999999999999999999999888766554

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=100.00  E-value=5.6e-40  Score=352.94  Aligned_cols=354  Identities=19%  Similarity=0.215  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHh
Q psy5093          52 TLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSL  131 (662)
Q Consensus        52 ~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~  131 (662)
                      .+..+++.+++++|++||+++++++.+++++|+++++|++|||++|++.+++.+|..+..  ....|.++...|++..++
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~--~~~~~~~~~~~c~~~~~~  141 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS--GATTYKLTPAQWFLREGS  141 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGGTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc--cccceeeCccccchHHHH
Confidence            788899999999999999999999999999999999999999999999999888865554  456788899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCC--C
Q psy5093         132 DVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTD--S  209 (662)
Q Consensus       132 ~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~  209 (662)
                      ..++..+|++++++||+|||++|+ |++|+..++++++..+++++|++++++++|+++.+..+    .....|...+  .
T Consensus       142 ~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~----~~~~~C~~~~~~~  216 (520)
T 3v2y_A          142 MFVALSASVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI----SALSSCSTVLPLY  216 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCT----TCGGGBCSSSTTB
T ss_pred             HHHHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHeeccc----cCCCcccccCCcc
Confidence            999999999999999999999999 99999999999999999999999999999999877654    2334565443  2


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccCCcccccCCCCCCccceeeeccCCCC---------C
Q psy5093         210 KGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS-----LKVGTKQVMSGSTSGEKELTLRIHRGGTD---------H  275 (662)
Q Consensus       210 ~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  275 (662)
                      ..+..+..++.+++|+++++++|.+|++.++++...     .+..+........................         .
T Consensus       217 ~~~~~~~~~~~~~lPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~t~~~g~~~~~~~~~~~~~~~~~~  296 (520)
T 3v2y_A          217 HKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDK  296 (520)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCEECSSSSEEETTTEECCSSSCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccccceeEecccccccccccccccchhhh
Confidence            334444556679999999999999999999987611     11110000000000000000000000000         0


Q ss_pred             CCCccCCCCCCcccccc-----cc-----ccCCCcc--------------------------ccccc--------c----
Q psy5093         276 RHMTLHHTPSDDVEMDN-----VM-----SGHNGIT--------------------------RQVSN--------T----  307 (662)
Q Consensus       276 ~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~--------------------------~~~~~--------~----  307 (662)
                      .............+.+.     ..     .......                          .....        .    
T Consensus       297 ~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  376 (520)
T 3v2y_A          297 AIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDE  376 (520)
T ss_dssp             HHTSCCTTCCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHSCHHHHHHHHHHHHHSCHHHHHTCHHHHHHHHTTCHHH
T ss_pred             HHHHhcCCcccHHHhhhHHHhccccccccccccccCCCcCCccchhhhHHHHHHHHccCCCcccccccccccccccchhh
Confidence            00000000000000000     00     0000000                          00000        0    


Q ss_pred             ----------------ccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCch
Q psy5093         308 ----------------RIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQD  371 (662)
Q Consensus       308 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~  371 (662)
                                      +........+.........+.++++|+++++++++++|++||+|+.++.++..+.+...   ..
T Consensus       377 ~~~~~~~s~~~~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~---~~  453 (520)
T 3v2y_A          377 AAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKT---CD  453 (520)
T ss_dssp             HHHHHHHSHHHHHSHHHHHHHHHHHHHCSGGGTCSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTT---CS
T ss_pred             HhhhhhccchhhhcccchhhHHHHhhcchhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---cc
Confidence                            00000000000000111122336899999999999999999999999999887654311   12


Q ss_pred             hHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093         372 EELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV  415 (662)
Q Consensus       372 ~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~  415 (662)
                      ......+..+++++|+++||+||+++|++||++++++++++...
T Consensus       454 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~  497 (520)
T 3v2y_A          454 ILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEV  497 (520)
T ss_dssp             TTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCSCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhccc
Confidence            33344567789999999999999999999999999998876544

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=100.00  E-value=8.7e-41  Score=355.71  Aligned_cols=361  Identities=23%  Similarity=0.315  Sum_probs=240.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhH
Q psy5093          48 AQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS  127 (662)
Q Consensus        48 ~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~  127 (662)
                      ....+++.+++.+++++|++||+++++++.+++++|++.++|++|||++|++.++. +|+.+.... .+.|.++...|++
T Consensus        14 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~-~~~~~~~~~~C~~   91 (464)
T 4dkl_A           14 MVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYL-MGTWPFGNILCKI   91 (464)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HSSCCSCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCcccccchhhh
Confidence            34578889999999999999999999999999999999999999999999999776 887666554 4689999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccC
Q psy5093         128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFT  207 (662)
Q Consensus       128 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~  207 (662)
                      ..++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|++++++++|.++........  ....|...
T Consensus        92 ~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~--~~~~c~~~  169 (464)
T 4dkl_A           92 VISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQ--GSIDCTLT  169 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEEET--TEEECCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheeecccC--CCceEEee
Confidence            9999999999999999999999999999999999999999999999999999999999988755433322  22334333


Q ss_pred             CC-------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCC---CCCccceeeeccCCCCCCC
Q psy5093         208 DS-------KGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGST---SGEKELTLRIHRGGTDHRH  277 (662)
Q Consensus       208 ~~-------~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  277 (662)
                      ..       ..|.++..++.+++|+++++++|+.|++.+++++++.+...........   ...............+...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (464)
T 4dkl_A          170 FSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPS  249 (464)
T ss_dssp             CSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHCCEEEEEECTTSCEEEETTEEEESSSC
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccccccccCCCCCccccccccccCCCc
Confidence            22       2245566677789999999999999999988765533322111000000   0000000000000000000


Q ss_pred             C------------ccCCCCCCcccccccc-----------ccCCCcc---------ccc---------------------
Q psy5093         278 M------------TLHHTPSDDVEMDNVM-----------SGHNGIT---------RQV---------------------  304 (662)
Q Consensus       278 ~------------~~~~~~~~~~~~~~~~-----------~~~~~~~---------~~~---------------------  304 (662)
                      .            .........++.+...           ....+..         +..                     
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (464)
T 4dkl_A          250 LNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSL  329 (464)
T ss_dssp             SHHHHHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHTSCHHHHHHHHHHHHHHCHHHHHTCHHHH
T ss_pred             cccccccccccccccccceecCCccccccccCCcccccccccCCCCCccccCcccccchhhhhccccCCCCCcccccccc
Confidence            0            0000000000000000           0000000         000                     


Q ss_pred             ---ccccc------cc-------------ccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q psy5093         305 ---SNTRI------IH-------------KGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC  362 (662)
Q Consensus       305 ---~~~~~------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~  362 (662)
                         ...+.      ..             ..............++.++++|+++++++++++|++||+|+.++.++..+.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~  409 (464)
T 4dkl_A          330 RMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALI  409 (464)
T ss_dssp             HHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhcccchhhcccccccccccCccccceeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence               00000      00             000000000111223346789999999999999999999999999988764


Q ss_pred             ccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCc
Q psy5093         363 TKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISP  414 (662)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~  414 (662)
                      ...  .......+..+..+|.++|+++||+||+++|++||++++++||++..
T Consensus       410 ~~~--~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc~~~~~  459 (464)
T 4dkl_A          410 TIP--ETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSS  459 (464)
T ss_dssp             CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC----
T ss_pred             cCC--ccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHhccccc
Confidence            321  23445566778889999999999999999999999999999877654

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=100.00  E-value=9.6e-38  Score=320.89  Aligned_cols=286  Identities=23%  Similarity=0.429  Sum_probs=227.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHH
Q psy5093          51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRS  130 (662)
Q Consensus        51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~  130 (662)
                      ..+..+++.+++++|++||+++++++.++|++|++.+++++|||++|++.+++.+|+.+.... .+.|.+++..|++..+
T Consensus        32 ~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~-~~~~~~~~~~C~~~~~  110 (364)
T 2ks9_A           32 IVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAV-HNEWYYGLFYCKFHNF  110 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTSCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccchHHHHHhHHH
Confidence            455688899999999999999999999999999999999999999999998888887665544 5679999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCC-
Q psy5093         131 LDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDS-  209 (662)
Q Consensus       131 ~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-  209 (662)
                      +..++..+|.+++++||+|||++|++|++|+  .+++++..+++++|+++++.++|..+..... . ......|...+. 
T Consensus       111 ~~~~~~~~s~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~-~-~~~~~~C~~~~~~  186 (364)
T 2ks9_A          111 FPIAAVFASIYSMTAVAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGYYSTTE-T-MPSRVVCMIEWPE  186 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTS--CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCC-B-CTTCSSBCCCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccchHHHHHHHHHHHHHHHHhHHHHHhhhe-e-cCCCCEEeecCCC
Confidence            9999999999999999999999999999875  6888999999999999999999876543222 1 223344543221 


Q ss_pred             -------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCC
Q psy5093         210 -------KGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHH  282 (662)
Q Consensus       210 -------~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (662)
                             ..|.....++.+++|+++++++|.+|.+.++++++..+.                                  
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~----------------------------------  232 (364)
T 2ks9_A          187 HPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDS----------------------------------  232 (364)
T ss_dssp             CCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSS----------------------------------
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----------------------------------
Confidence                   134555667788999999999999999877542211000                                  


Q ss_pred             CCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q psy5093         283 TPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC  362 (662)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~  362 (662)
                                                            ..+.+++.++++|+++++++++++|++||+|+.+..++....
T Consensus       233 --------------------------------------~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~  274 (364)
T 2ks9_A          233 --------------------------------------SDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYIN  274 (364)
T ss_dssp             --------------------------------------SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------chhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                                                  000112234788999999999999999999999998887765


Q ss_pred             ccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCc
Q psy5093         363 TKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISP  414 (662)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~  414 (662)
                      ++.. .......+..+..++.++|+++||+||++++++||+++++++++++.
T Consensus       275 ~~~~-~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~  325 (364)
T 2ks9_A          275 PDLY-LKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF  325 (364)
T ss_dssp             TTSC-SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSCC
T ss_pred             cccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCC
Confidence            4322 12223456677888999999999999999999999999999876543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=100.00  E-value=6.2e-38  Score=312.22  Aligned_cols=273  Identities=26%  Similarity=0.401  Sum_probs=219.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHH
Q psy5093          51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRS  130 (662)
Q Consensus        51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~  130 (662)
                      +.+..+++.+++++|++||+++++++.++|++|+++|+|++|||++|++.++ .+|+.+....  .+|..|+..|+...+
T Consensus        11 ~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~~--~~~~~~~~~c~~~~~   87 (296)
T 2lnl_A           11 KYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWAASKV--NGWIFGTFLCKVVSL   87 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHH--SSSCCSSHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH-hhhHHHhhcc--CCCccchhHHHHHhh
Confidence            5677889999999999999999999999999999999999999999999865 4675555443  469999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcccc----
Q psy5093         131 LDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPF----  206 (662)
Q Consensus       131 ~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~----  206 (662)
                      +..++..+|.+++++||+|||++|++|++|+... ++++..+++++|+++++.++|+...+............+..    
T Consensus        88 ~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~-~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  166 (296)
T 2lnl_A           88 LKEVNFYSGILLLACISVDRYLAIVHATRTLTQK-RHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGND  166 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCSCC
T ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhhccccchhh-hhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeeeecccc
Confidence            9999999999999999999999999999987654 45667788889999999999998877665443332222211    


Q ss_pred             --CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCC
Q psy5093         207 --TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP  284 (662)
Q Consensus       207 --~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (662)
                        .....+......+.+++|+.++..+|..+.+.++++.+                                        
T Consensus       167 ~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~----------------------------------------  206 (296)
T 2lnl_A          167 TAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM----------------------------------------  206 (296)
T ss_dssp             TTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSCCC----------------------------------------
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------------------------
Confidence              12233556667788899999999999887654322110                                        


Q ss_pred             CCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhcc
Q psy5093         285 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTK  364 (662)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~  364 (662)
                                                                  ++++|++|++.+++++|++||+|+.+..++......
T Consensus       207 --------------------------------------------~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~  242 (296)
T 2lnl_A          207 --------------------------------------------GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRT  242 (296)
T ss_dssp             --------------------------------------------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             --------------------------------------------hhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhcc
Confidence                                                        167789999999999999999999999998877543


Q ss_pred             ccCCCc-----hhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhccc
Q psy5093         365 CFWSEQ-----DEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHK  411 (662)
Q Consensus       365 ~~~~~~-----~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~  411 (662)
                      ......     .......++.+++++|+++||+||+++|++||+++|+++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~c  294 (296)
T 2lnl_A          243 QVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAM  294 (296)
T ss_dssp             SSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred             ccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence            322211     12345667888999999999999999999999999998865

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=100.00  E-value=1.3e-37  Score=329.16  Aligned_cols=293  Identities=25%  Similarity=0.406  Sum_probs=236.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhc-ccHHHHHhhccccccccccchhHH
Q psy5093          50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVV-MPFSALYELLDHNWIFGLNWCDSW  128 (662)
Q Consensus        50 ~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~-~p~~~~~~~~~~~~~~~~~~C~~~  128 (662)
                      ...++.+++.+++++|++||+++++++.++|++|++.+++++|||++|++.+++. +|+.+.... .+.|.++...|++.
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~-~~~~~~~~~~C~~~  111 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF-LKKWIFGFAACKVY  111 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHh-cCCccCCHHHHHHH
Confidence            4567888999999999999999999999999999999999999999999998764 786665544 56899999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCC
Q psy5093         129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTD  208 (662)
Q Consensus       129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~  208 (662)
                      .++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|+++++++++.++.+.....+. ....|...+
T Consensus       112 ~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~-~~~~c~~~~  190 (448)
T 2z73_A          112 GFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEG-VLCNCSFDY  190 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECT-TSSSEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecC-CceeEeccc
Confidence            9999999999999999999999999999999999999999999999999999999999888765543332 344564332


Q ss_pred             C------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCC
Q psy5093         209 S------KGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHH  282 (662)
Q Consensus       209 ~------~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (662)
                      .      ..+.....++.+++|+++++++|.+|++.++++.++.+...+...                            
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~----------------------------  242 (448)
T 2z73_A          191 ISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLN----------------------------  242 (448)
T ss_dssp             SCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTC----------------------------
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------------
Confidence            1      123444556678999999999999999999988776542111000                            


Q ss_pred             CCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q psy5093         283 TPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC  362 (662)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~  362 (662)
                                                         ....++.....++++|+++++++++++|++||+|+.++.++..+.
T Consensus       243 -----------------------------------~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~  287 (448)
T 2z73_A          243 -----------------------------------AKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFG  287 (448)
T ss_dssp             -----------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -----------------------------------hHHHHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence                                               000111122344788999999999999999999999998887764


Q ss_pred             ccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhccc
Q psy5093         363 TKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHK  411 (662)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~  411 (662)
                      ...    ........+..++.++|+++||+||+++|++||+++++++++
T Consensus       288 ~~~----~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~  332 (448)
T 2z73_A          288 PLE----WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW  332 (448)
T ss_dssp             CGG----GCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred             Ccc----cCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence            321    223456677888999999999999999999999999998864

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=100.00  E-value=2.8e-38  Score=322.95  Aligned_cols=285  Identities=19%  Similarity=0.336  Sum_probs=230.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchh
Q psy5093          47 LAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCD  126 (662)
Q Consensus        47 ~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~  126 (662)
                      .+....+..+++.+++++|++||+++++++.+++++|++.+++++|||++|++.+++.+|..+... ..+.|.+++..|+
T Consensus        34 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~-~~~~~~~~~~~C~  112 (349)
T 1u19_A           34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS-LHGYFVFGPTGCN  112 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHTSCTTHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHH-hcCeeeCChhHHH
Confidence            344567788899999999999999999999999999999999999999999999988888665544 3567999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcccc
Q psy5093         127 SWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPF  206 (662)
Q Consensus       127 ~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~  206 (662)
                      +..++..++..+|.+++++||+|||++|++|++|++ ++++++...++++|+++++.++|+++.+..+..+. ....|..
T Consensus       113 ~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~-~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~C~~  190 (349)
T 1u19_A          113 LEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG-MQCSCGI  190 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEET-TTTEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccee-eccchhHHHHHHHHHHHHHHHHHHHHheeeeeccC-Cceeecc
Confidence            999999999999999999999999999999999876 79999999999999999999999988765443222 3345643


Q ss_pred             CC--------CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCC
Q psy5093         207 TD--------SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHM  278 (662)
Q Consensus       207 ~~--------~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (662)
                      ..        ...|.....++.+++|+++++++|.+|++.++++.++.+                               
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~-------------------------------  239 (349)
T 1u19_A          191 DYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ-------------------------------  239 (349)
T ss_dssp             CCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC-------------------------------
T ss_pred             cccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------------------------------
Confidence            32        123445556677889999999999999887754432110                               


Q ss_pred             ccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHH
Q psy5093         279 TLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLL  358 (662)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~  358 (662)
                                                                  +..++.++++|++++++++++.|++||+|+.+..++
T Consensus       240 --------------------------------------------~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~  275 (349)
T 1u19_A          240 --------------------------------------------ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY  275 (349)
T ss_dssp             --------------------------------------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence                                                        001122367899999999999999999999998887


Q ss_pred             HHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093         359 SAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS  413 (662)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~  413 (662)
                      ......    ......+..+..++.++|+++||+||++++++||+++++++|+.+
T Consensus       276 ~~~~~~----~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~  326 (349)
T 1u19_A          276 IFTHQG----SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK  326 (349)
T ss_dssp             HHHTTT----SCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSC
T ss_pred             heecCC----cccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccC
Confidence            766432    222345667888899999999999999999999999998876543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=100.00  E-value=1.3e-40  Score=352.42  Aligned_cols=363  Identities=25%  Similarity=0.389  Sum_probs=241.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhH
Q psy5093          48 AQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS  127 (662)
Q Consensus        48 ~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~  127 (662)
                      .....+..+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+++.+|+.+...   ..|..+...|++
T Consensus        28 ~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~---~~~~~~~~~C~~  104 (447)
T 4eiy_A           28 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS---TGFCAACHGCLF  104 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH---TTCEEEHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccCccHHHH
Confidence            34456788899999999999999999999999999999999999999999999998899766533   356778899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCC---CCCcc
Q psy5093         128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEV---PKNKC  204 (662)
Q Consensus       128 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~---~~~~c  204 (662)
                      ..++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|++++++++|+++.+........   ....|
T Consensus       105 ~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~~~~~c  184 (447)
T 4eiy_A          105 IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGC  184 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999887654432211   11123


Q ss_pred             ccC----------CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccC-----CCCCCcc---cee
Q psy5093         205 PFT----------DSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSG-----STSGEKE---LTL  266 (662)
Q Consensus       205 ~~~----------~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~  266 (662)
                      ...          ....+..+..++.+++|+++++++|++|++.++++.++.+.........     ......+   ...
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (447)
T 4eiy_A          185 GEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALT  264 (447)
T ss_dssp             CTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred             cccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCccccchhhhccch
Confidence            211          1112233345567789999999999999999999877654321110000     0000000   000


Q ss_pred             eec---cCCCCCCCCccCCCCCCcccccccc----------------ccCCCccccc-cccccccccccccccccccchh
Q psy5093         267 RIH---RGGTDHRHMTLHHTPSDDVEMDNVM----------------SGHNGITRQV-SNTRIIHKGHIVKNFSLSRKLS  326 (662)
Q Consensus       267 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  326 (662)
                      ...   .......+.................                .......... ...+.....+.......++.++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (447)
T 4eiy_A          265 KMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARS  344 (447)
T ss_dssp             HHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHTHHHHHHHHHH
T ss_pred             hhhccCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccchhhhhcccCCcCcccchhhhhcccccchhhccccchhH
Confidence            000   0000000000000000000000000                0000000000 0000000000000001122334


Q ss_pred             hHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHH
Q psy5093         327 KFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEK  406 (662)
Q Consensus       327 ~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~  406 (662)
                      +.++++|+++++++++++|++||+|+.++.++..+.++.   .....++..+..++.++|+++||+||++++++||++++
T Consensus       345 ~~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~  421 (447)
T 4eiy_A          345 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC---SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFR  421 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcc---cccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHH
Confidence            556899999999999999999999999999988775432   33456677899999999999999999999999999999


Q ss_pred             HhcccCCccc
Q psy5093         407 ILNHKISPVV  416 (662)
Q Consensus       407 ~l~~~~~~~~  416 (662)
                      ++++++.++.
T Consensus       422 ~~~~~~~~r~  431 (447)
T 4eiy_A          422 KIIRSHVLRQ  431 (447)
T ss_dssp             HHHHHTC---
T ss_pred             HHHHHHHhcc
Confidence            9988776553

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=100.00  E-value=5.5e-38  Score=315.88  Aligned_cols=292  Identities=40%  Similarity=0.661  Sum_probs=232.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchh
Q psy5093          47 LAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCD  126 (662)
Q Consensus        47 ~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~  126 (662)
                      .+..+.+..+++.+++++|++||+++++++.+++++|++.+++++|||++|++.+++.+|+.+... ..+.|.+++..|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~-~~~~~~~~~~~C~   85 (315)
T 4amj_A            7 SQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV-VRGTWLWGSFLCE   85 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHSSCCSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHH-hcCCeeccccHHH
Confidence            345667888999999999999999999999999999999999999999999999988888766544 4568999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCC------C
Q psy5093         127 SWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEV------P  200 (662)
Q Consensus       127 ~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~------~  200 (662)
                      +..++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|+++++.++++.+..........      .
T Consensus        86 ~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  165 (315)
T 4amj_A           86 LWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQD  165 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCCccccccc
Confidence            9999999999999999999999999999999999888999999999999999999999888775433222111      1


Q ss_pred             CCccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCcc
Q psy5093         201 KNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTL  280 (662)
Q Consensus       201 ~~~c~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (662)
                      ...|.......|.....++.+++|+++++++|.+|++.++++.++.+...                              
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~------------------------------  215 (315)
T 4amj_A          166 PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRAS------------------------------  215 (315)
T ss_dssp             TTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC--------------------------------------
T ss_pred             cccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc------------------------------
Confidence            12223334455666677778889999999999999999987655332110                              


Q ss_pred             CCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy5093         281 HHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA  360 (662)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~  360 (662)
                                                             +.+..+...++++|+++++.+++++|++||+|+.+..++..
T Consensus       216 ---------------------------------------~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~  256 (315)
T 4amj_A          216 ---------------------------------------KRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNV  256 (315)
T ss_dssp             -------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                   00111223347889999999999999999999999999887


Q ss_pred             hhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCc
Q psy5093         361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISP  414 (662)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~  414 (662)
                      ...+     ........+..++.++|+++||+||+ ++++||+++++++++.+.
T Consensus       257 ~~~~-----~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~~  304 (315)
T 4amj_A          257 FNRD-----LVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRK  304 (315)
T ss_dssp             HCTT-----SSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC----
T ss_pred             hcCc-----cchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCCc
Confidence            6532     23456677888899999999999999 999999999998876544

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=100.00  E-value=1.5e-37  Score=334.06  Aligned_cols=313  Identities=38%  Similarity=0.639  Sum_probs=235.1

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccch
Q psy5093          46 ELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWC  125 (662)
Q Consensus        46 ~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C  125 (662)
                      ..+....+..+++.+++++|++||+++++++.+++++|++.++|++|||++|++.+++.+|+.+.... .+.|.++...|
T Consensus       177 ~~~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~-~~~~~~~~~~C  255 (514)
T 3sn6_R          177 ADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL-TKTWTFGNFWC  255 (514)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHH-HTSCCSCSHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHH-cCCeeCCcchh
Confidence            34445677889999999999999999999999999999999999999999999999988997666554 56899999999


Q ss_pred             hHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCC------C
Q psy5093         126 DSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEE------V  199 (662)
Q Consensus       126 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~------~  199 (662)
                      ++..++..++..+|.+++++||+|||++|++|++|++.++++++..+++++|++++++++++.+.........      .
T Consensus       256 ~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~~  335 (514)
T 3sn6_R          256 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYA  335 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCcccceee
Confidence            9999999999999999999999999999999999998899999999999999999999977665432221111      0


Q ss_pred             CCCccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCc
Q psy5093         200 PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMT  279 (662)
Q Consensus       200 ~~~~c~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (662)
                      ...++.......|.++..++.+++|+++++++|.+|++.++++.++.+........+...+..                 
T Consensus       336 ~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------  398 (514)
T 3sn6_R          336 EETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVE-----------------  398 (514)
T ss_dssp             SSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc-----------------
Confidence            112223334556777788889999999999999999999998877654322111000000000                 


Q ss_pred             cCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy5093         280 LHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLS  359 (662)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~  359 (662)
                                                       +........++..+..++++|+++++++++++|++||+|+.+..++.
T Consensus       399 ---------------------------------~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~  445 (514)
T 3sn6_R          399 ---------------------------------QDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVH  445 (514)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                             00000001111222334789999999999999999999999999887


Q ss_pred             HhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093         360 AVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV  415 (662)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~  415 (662)
                      ....     ......+..+..++.++|+++||+||+ ++++||+++++++|+.++.
T Consensus       446 ~~~~-----~~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~~  495 (514)
T 3sn6_R          446 VIQD-----NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSS  495 (514)
T ss_dssp             HHST-----TSSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC-----
T ss_pred             HHcc-----cccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCccc
Confidence            7643     223455677888999999999999999 9999999999998765544

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.93  E-value=4.8e-26  Score=243.72  Aligned_cols=79  Identities=23%  Similarity=0.461  Sum_probs=66.5

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCC---cchhHHHHHHHHHHHHhhhhhHHHHHhccccc
Q psy5093         584 LSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSE---QDEELISAVVTWLGWINSGMNPVIYACWSRDF  660 (662)
Q Consensus       584 ~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~f  660 (662)
                      .++.++|+|++||+++|+++|++||+||+++.++..+++++....   .....++.++.||+|+|||+||+||+++|++|
T Consensus       398 ~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~F  477 (510)
T 4grv_A          398 SGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANF  477 (510)
T ss_dssp             TSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            345668899999999999999999999999999999887543222   12345667889999999999999999999999


Q ss_pred             cC
Q psy5093         661 RR  662 (662)
Q Consensus       661 R~  662 (662)
                      ||
T Consensus       478 R~  479 (510)
T 4grv_A          478 RQ  479 (510)
T ss_dssp             CC
T ss_pred             HH
Confidence            97

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.88  E-value=8.9e-23  Score=217.85  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=63.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         586 KFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       586 ~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      +.++++|++||+++|+++|++||+||+++.++..+.............++.++.+|+++||++||+||++++++||+
T Consensus       381 ~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~  457 (484)
T 3vw7_A          381 NRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQR  457 (484)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC--
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHH
Confidence            45678899999999999999999999999999876543222334455777889999999999999999999999996

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.87  E-value=4.6e-21  Score=204.82  Aligned_cols=70  Identities=47%  Similarity=0.958  Sum_probs=62.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         587 FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       587 ~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      .++|+|++||+++|+++|++||+||+++.++..+++.     ..+..++.++.||+|+||++||+||++ +++||+
T Consensus       400 ~~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~-----~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~  469 (500)
T 2rh1_A          400 CLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRI  469 (500)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-----SSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----cccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHH
Confidence            3578999999999999999999999999999988743     335677888999999999999999996 999995

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.85  E-value=2.8e-21  Score=205.26  Aligned_cols=88  Identities=23%  Similarity=0.454  Sum_probs=69.7

Q ss_pred             cCCcccccceeeeehhhHHHHHHhhchhhhhhcccccC-CccCCCCcee--cCCchhHhhhhhHHHHHhHHHHHHHHHHH
Q psy5093         418 LLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRN-EEVPKNKCPF--TDSKGYLIFSSTISFYLPLLVMVFTYFKI  494 (662)
Q Consensus       418 ~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~-~~~~~~~C~~--~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I  494 (662)
                      .|...++.+.+..++++.|+.+++..+|+++.+....+ ...+...|..  .....|.++..++.|++|+++|+++|++|
T Consensus       130 ~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I  209 (467)
T 3uon_A          130 TYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHI  209 (467)
T ss_dssp             TSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSCCCCGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcceeecCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888899999999999999999999888765422 2234456743  34567888888899999999999999999


Q ss_pred             HHHHHHhhhcc
Q psy5093         495 YRAAVVQTKSL  505 (662)
Q Consensus       495 ~~~~~~~~~~~  505 (662)
                      ++.++++.++.
T Consensus       210 ~~~l~~~~~~~  220 (467)
T 3uon_A          210 SRASKSRINIF  220 (467)
T ss_dssp             HHHHTTCCCHH
T ss_pred             HHHHHHhhhHH
Confidence            99999876543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.85  E-value=4.3e-21  Score=205.88  Aligned_cols=72  Identities=35%  Similarity=0.605  Sum_probs=60.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         588 AKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       588 ~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      ++++|+++|+++++++|++||+||++..++..+++..   .........++.+|+++|||+||+||++++++||+
T Consensus       414 ~~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~  485 (520)
T 3v2y_A          414 SENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVK---TCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRR  485 (520)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT---TCSTTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---cccHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            4689999999999999999999999999998876531   11233445567889999999999999999999985

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.84  E-value=3.2e-22  Score=214.60  Aligned_cols=77  Identities=23%  Similarity=0.437  Sum_probs=63.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhccccc-----CCcchhHHHHHHHHHHHHhhhhhHHHHHhccccc
Q psy5093         586 KFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW-----SEQDEELISAVVTWLGWINSGMNPVIYACWSRDF  660 (662)
Q Consensus       586 ~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~f  660 (662)
                      +.++++|++|++++++++|++||+||+++.++..+......     .......+..++.+|+++||++||+||++++++|
T Consensus       404 ~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~f  483 (502)
T 3odu_A          404 KGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKF  483 (502)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCC
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHH
Confidence            45678999999999999999999999999999876521100     1234556667899999999999999999999999


Q ss_pred             cC
Q psy5093         661 RR  662 (662)
Q Consensus       661 R~  662 (662)
                      |+
T Consensus       484 R~  485 (502)
T 3odu_A          484 KT  485 (502)
T ss_dssp             CC
T ss_pred             HH
Confidence            96

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.84  E-value=1.5e-21  Score=206.44  Aligned_cols=72  Identities=40%  Similarity=0.981  Sum_probs=62.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         586 KFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       586 ~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      +.++|+|++|++++++++|++||+||.+..++..+.+..     ....+..++.+|+++||++||+||++++++||+
T Consensus       364 ~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~-----~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~  435 (452)
T 3rze_A          364 HMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC-----CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKK  435 (452)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----SCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHhcccchhhhhccHHHHH
Confidence            345789999999999999999999999999998877542     234455688899999999999999999999995

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.83  E-value=6.7e-20  Score=195.78  Aligned_cols=74  Identities=36%  Similarity=0.739  Sum_probs=65.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         586 KFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       586 ~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      +.++++|++|++++++++|++||+||.++.++..+.+.+   ......+..++.+|+++||++||+||++++++||+
T Consensus       386 ~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~  459 (488)
T 3eml_A          386 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC---SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQ  459 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc---ccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHH
Confidence            356889999999999999999999999999998887643   24456677789999999999999999999999995

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.83  E-value=1.5e-20  Score=199.49  Aligned_cols=74  Identities=28%  Similarity=0.525  Sum_probs=63.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         587 FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       587 ~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      .++|+|++||+++++++|++||+||++..++..+....  ........+.++.+|+++||++||+||++++++||+
T Consensus       375 ~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~  448 (464)
T 4dkl_A          375 DRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIP--ETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKR  448 (464)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC--ccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHH
Confidence            46788999999999999999999999999998876421  234455667788899999999999999999999995

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.83  E-value=7.7e-21  Score=202.63  Aligned_cols=71  Identities=44%  Similarity=0.958  Sum_probs=62.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         588 AKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       588 ~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      ++++|++||+++++++|++||+||.+..++..+++.    ......++.++.+|+++||++||+||++++++||+
T Consensus       394 ~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~----~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~  464 (481)
T 3pbl_A          394 LREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT----CHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRK  464 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc----ccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHH
Confidence            368999999999999999999999999999887653    23456677889999999999999999999999995

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.81  E-value=5.4e-19  Score=186.34  Aligned_cols=177  Identities=19%  Similarity=0.314  Sum_probs=130.5

Q ss_pred             cCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecC------CchhHhhhhhHHHHHhHHHHHHHH
Q psy5093         418 LLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTD------SKGYLIFSSTISFYLPLLVMVFTY  491 (662)
Q Consensus       418 ~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~------~~~y~~~~~~~~f~lP~~ii~~~Y  491 (662)
                      .|...++++.+..++++.|+.++++.+|+++.+...... .....|....      ...|.+...++.|++|+++|+++|
T Consensus       142 ~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y  220 (448)
T 2z73_A          142 AASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE-GVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCY  220 (448)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEEC-TTSSSEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             cccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeec-CCceeEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677888899999999999999999998887655322 2345674332      234566667778999999999999


Q ss_pred             HHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCcccccc
Q psy5093         492 FKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHK  571 (662)
Q Consensus       492 ~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (662)
                      .+|++.++++.++.+......                                                           
T Consensus       221 ~~I~~~l~~~~~~~~~~~~~~-----------------------------------------------------------  241 (448)
T 2z73_A          221 FNIVMSVSNHEKEMAAMAKRL-----------------------------------------------------------  241 (448)
T ss_dssp             HHHHTTHHHHHHHHHHHHTTT-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhh-----------------------------------------------------------
Confidence            999999998877643211000                                                           


Q ss_pred             cccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHH
Q psy5093         572 GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPV  651 (662)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPi  651 (662)
                          +....++..+..++++|++|++++++++|++||+|+.+..++..+....    ........+..+++++||++||+
T Consensus       242 ----~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPi  313 (448)
T 2z73_A          242 ----NAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLE----WVTPYAAQLPVMFAKASAIHNPM  313 (448)
T ss_dssp             ----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG----GCCHHHHHHHHHHHHHGGGSHHH
T ss_pred             ----hhHHHHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCcc----cCChHHHHHHHHHHHHHHhhcch
Confidence                0000111222345688999999999999999999999999988765421    22345667788999999999999


Q ss_pred             HHHhccccccC
Q psy5093         652 IYACWSRDFRR  662 (662)
Q Consensus       652 iY~~~~~~fR~  662 (662)
                      ||++++++||+
T Consensus       314 IY~~~~~~fR~  324 (448)
T 2z73_A          314 IYSVSHPKFRE  324 (448)
T ss_dssp             HHHHHCHHHHH
T ss_pred             HHHHhhHHHHH
Confidence            99999999995

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.81  E-value=1.5e-19  Score=190.63  Aligned_cols=239  Identities=21%  Similarity=0.342  Sum_probs=132.1

Q ss_pred             CCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCc---cCCCCcee-------c---CCchhHhhhhhHHHHHhHH
Q psy5093         419 LPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEE---VPKNKCPF-------T---DSKGYLIFSSTISFYLPLL  485 (662)
Q Consensus       419 y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~---~~~~~C~~-------~---~~~~y~~~~~~~~f~lP~~  485 (662)
                      |...++.+.+..++++.|+.+++..+|++++|.......   .....|..       .   ....|..+..++.|++|++
T Consensus       137 ~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~  216 (447)
T 4eiy_A          137 YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLL  216 (447)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHHHHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHH
T ss_pred             cchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCccccccccccccchhhccccccchHHHHHHHHHHHHHHHHH
Confidence            455567788888899999999999999998887543221   01122421       1   1123444556677899999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCcccccC-----CCCCCccccc--cc------ccCCCCCCCCCcccCCCCCCcccccc
Q psy5093         486 VMVFTYFKIYRAAVVQTKSLKVGTKQVMS-----GSTSGEKELT--LR------IHRGGTDHRHMTLHHTPSDDVEMDNV  552 (662)
Q Consensus       486 ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (662)
                      +|+++|++|++.++++.++..........     ..........  .+      .......... .....+..... .+.
T Consensus       217 ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~  294 (447)
T 4eiy_A          217 LMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPK-LEDKSPDSPEM-KDF  294 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHC----------------C-HHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCccccchhhhccchhhhccCCCCCCCCCCC-CcCCCCCCccc-ccc
Confidence            99999999999999987765432111000     0000000000  00      0000000000 00000000000 000


Q ss_pred             ccCCCCccccc-------CCccc--------c--cccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy5093         553 MSGHNGITRQV-------SNTRI--------I--HKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVN  615 (662)
Q Consensus       553 ~~~~~~~~~~~-------~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~  615 (662)
                      ..+........       ...+.        +  ...+........+..++.++++|++|++++++++|++||+|+.+..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~vv~~F~icw~P~~i~~  374 (447)
T 4eiy_A          295 RHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIIN  374 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCccchhhhhcccCCcCcccchhhhhcccccchhhccccchhHHHHHHHHHHHHHHHhhhhhheeccHHHHHH
Confidence            00000000000       00000        0  0000000001122233457889999999999999999999999999


Q ss_pred             HHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         616 LLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       616 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      ++..+.+.+   ......+..++.+|+++||++||+||++++++||+
T Consensus       375 ~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~  418 (447)
T 4eiy_A          375 CFTFFCPDC---SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQ  418 (447)
T ss_dssp             HHHHHCTTS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHhcCcc---cccchHHHHHHHHHHHHHhccchhhhHhccHHHHH
Confidence            998876542   24455677889999999999999999999999995

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.80  E-value=8.3e-19  Score=188.10  Aligned_cols=188  Identities=31%  Similarity=0.583  Sum_probs=123.6

Q ss_pred             CCcccccceeeeehhhHHHHHHhhchhhh-hhcccccCCcc----CCCCc-eecCCchhHhhhhhHHHHHhHHHHHHHHH
Q psy5093         419 LPMCMYPQYLVLISLCYYVTTLVLTAPAI-LWWRAVRNEEV----PKNKC-PFTDSKGYLIFSSTISFYLPLLVMVFTYF  492 (662)
Q Consensus       419 y~~~~~~~~~~~~~~~~w~~~~~~~~p~~-~~~~~~~~~~~----~~~~C-~~~~~~~y~~~~~~~~f~lP~~ii~~~Y~  492 (662)
                      |...++++.+..++++.|+.++++.+|+. +.+......+.    ....| .......|.++..++.|++|+++|+++|.
T Consensus       290 ~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~  369 (514)
T 3sn6_R          290 YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYS  369 (514)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHHHSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             cchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCcccceeecccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456777888899999999998886554 44433221110    01122 33445678888889999999999999999


Q ss_pred             HHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccc
Q psy5093         493 KIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKG  572 (662)
Q Consensus       493 ~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (662)
                      +|++.++++.++................                                                  ..
T Consensus       370 ~I~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~  399 (514)
T 3sn6_R          370 RVFQEAKRQLQKIDKSEGRFHVQNLSQV--------------------------------------------------EQ  399 (514)
T ss_dssp             HHHHHHHHHHHHHHHHCCC-------------------------------------------------------------
T ss_pred             HHHHHHHHhhhccccccccccccccccc--------------------------------------------------cc
Confidence            9999999887765432211000000000                                                  00


Q ss_pred             ccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHH
Q psy5093         573 HIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVI  652 (662)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPii  652 (662)
                      ........++..+..++++|+++++++++++|++||+|+.+..++..+.+.     .....+..+..+++++||++||+|
T Consensus       400 ~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~-----~~~~~~~~~~~~l~~~ns~~NPiI  474 (514)
T 3sn6_R          400 DGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-----LIRKEVYILLNWIGYVNSGFNPLI  474 (514)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-----SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----ccchHHHHHHHHHHHHHHhhhHHh
Confidence            000000111122233578899999999999999999999999998876532     334567778889999999999999


Q ss_pred             HHhccccccC
Q psy5093         653 YACWSRDFRR  662 (662)
Q Consensus       653 Y~~~~~~fR~  662 (662)
                      |+ ++++||+
T Consensus       475 Y~-~~~~fR~  483 (514)
T 3sn6_R          475 YC-RSPDFRI  483 (514)
T ss_dssp             HT-TCHHHHH
T ss_pred             hc-CCHHHHH
Confidence            99 8999985

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.80  E-value=2e-18  Score=171.18  Aligned_cols=159  Identities=22%  Similarity=0.366  Sum_probs=114.7

Q ss_pred             CCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCce------ecCCchhHhhhhhHHHHHhHHHHHHHHH
Q psy5093         419 LPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCP------FTDSKGYLIFSSTISFYLPLLVMVFTYF  492 (662)
Q Consensus       419 y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~------~~~~~~y~~~~~~~~f~lP~~ii~~~Y~  492 (662)
                      |...++ ++...+++.+|+.+++..+|+...+............+.      ......|.+......+++|+.++.++|.
T Consensus       117 ~~~~~~-~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~  195 (296)
T 2lnl_A          117 TLTQKR-HLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYG  195 (296)
T ss_dssp             SSCCHH-HHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             cchhhh-hhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344333 345566778899999999999888776543322211111      1223457777788899999999999999


Q ss_pred             HHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccc
Q psy5093         493 KIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKG  572 (662)
Q Consensus       493 ~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (662)
                      ++.+.++++.                                                                      
T Consensus       196 ~i~~~~~~~~----------------------------------------------------------------------  205 (296)
T 2lnl_A          196 FTLRTLFKAH----------------------------------------------------------------------  205 (296)
T ss_dssp             HHTTTSSSCC----------------------------------------------------------------------
T ss_pred             HHHHHHHHHh----------------------------------------------------------------------
Confidence            8864332210                                                                      


Q ss_pred             ccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCC-----cchhHHHHHHHHHHHHhhh
Q psy5093         573 HIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSE-----QDEELISAVVTWLGWINSG  647 (662)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~ns~  647 (662)
                                    .++++|++|++++++++|++||+|+++..++..+.+......     .....+..++.+|+++||+
T Consensus       206 --------------~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~  271 (296)
T 2lnl_A          206 --------------MGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSC  271 (296)
T ss_dssp             --------------CHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGT
T ss_pred             --------------hhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHH
Confidence                          135778999999999999999999999999988765322111     1123566788899999999


Q ss_pred             hhHHHHHhccccccC
Q psy5093         648 MNPVIYACWSRDFRR  662 (662)
Q Consensus       648 iNPiiY~~~~~~fR~  662 (662)
                      +||+||++++++|||
T Consensus       272 ~NPiIY~~~~~~fR~  286 (296)
T 2lnl_A          272 LNPIIYAFIGQNFRH  286 (296)
T ss_dssp             HHHHHHHHHCSHHHH
T ss_pred             HHHHHHHhcCHHHHH
Confidence            999999999999996

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.80  E-value=4.6e-18  Score=173.99  Aligned_cols=165  Identities=21%  Similarity=0.398  Sum_probs=118.4

Q ss_pred             cccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecC--------CchhHhhhhhHHHHHhHHHHHHHHHHH
Q psy5093         423 MYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTD--------SKGYLIFSSTISFYLPLLVMVFTYFKI  494 (662)
Q Consensus       423 ~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~--------~~~y~~~~~~~~f~lP~~ii~~~Y~~I  494 (662)
                      ++++....++++.|+.+++..+|........ . ..+...|....        ...|.+...++.|++|+++++++|.+|
T Consensus       142 ~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~-~-~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i  219 (364)
T 2ks9_A          142 LSATATKVVICVIWVLALLLAFPQGYYSTTE-T-MPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVV  219 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCC-B-CTTCSSBCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHhHHHHHhhhe-e-cCCCCEEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566667788899999999999876543322 1 22445673321        125677777888999999999999999


Q ss_pred             HHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccccc
Q psy5093         495 YRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHI  574 (662)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (662)
                      ++.++++.++....                                                                  
T Consensus       220 ~~~l~~~~~~~~~~------------------------------------------------------------------  233 (364)
T 2ks9_A          220 GITLWASEIPGDSS------------------------------------------------------------------  233 (364)
T ss_dssp             HHSSCSCCCSSSSS------------------------------------------------------------------
T ss_pred             HHHHHhcCCCCCcc------------------------------------------------------------------
Confidence            98776432111000                                                                  


Q ss_pred             ccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHH
Q psy5093         575 VKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYA  654 (662)
Q Consensus       575 ~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~  654 (662)
                            .+..++.++++|++|++++++++|++||+|+.+..++..+.+... ........+.+..+++++||++||+||+
T Consensus       234 ------~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ns~~NPiiY~  306 (364)
T 2ks9_A          234 ------DRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLY-LKKFIQQVYLAIMWLAMSSTMYNPIIYC  306 (364)
T ss_dssp             ------SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSC-SSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  000112356889999999999999999999999999887765422 2233445667788999999999999999


Q ss_pred             hccccccC
Q psy5093         655 CWSRDFRR  662 (662)
Q Consensus       655 ~~~~~fR~  662 (662)
                      +++++||+
T Consensus       307 ~~~~~fR~  314 (364)
T 2ks9_A          307 CLNDRFRL  314 (364)
T ss_dssp             HHCHHHHH
T ss_pred             HHhHHHHH
Confidence            99999995

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.79  E-value=1.3e-18  Score=174.14  Aligned_cols=169  Identities=34%  Similarity=0.623  Sum_probs=121.2

Q ss_pred             CCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCcc------CCCCceecCCchhHhhhhhHHHHHhHHHHHHHHH
Q psy5093         419 LPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEV------PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYF  492 (662)
Q Consensus       419 y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~------~~~~C~~~~~~~y~~~~~~~~f~lP~~ii~~~Y~  492 (662)
                      |+..+++++...++++.|+.+++...|+.+........+.      ....|.......|.....++.+++|+++++++|.
T Consensus       119 ~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~  198 (315)
T 4amj_A          119 YQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVAL  198 (315)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred             cccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCCccccccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445667778888999999999988877765433221110      1112233456678888888889999999999999


Q ss_pred             HHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccc
Q psy5093         493 KIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKG  572 (662)
Q Consensus       493 ~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (662)
                      +|++.++++.++....+..                                                             
T Consensus       199 ~i~~~~~~~~~~~~~~~~~-------------------------------------------------------------  217 (315)
T 4amj_A          199 RVYREAKEQIRKIDRASKR-------------------------------------------------------------  217 (315)
T ss_dssp             HHHHHHHTC-----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhccCccccc-------------------------------------------------------------
Confidence            9999998876543211100                                                             


Q ss_pred             ccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHH
Q psy5093         573 HIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVI  652 (662)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPii  652 (662)
                              ..++...++++|+++++++++++|++||+|+.+..++..+.+.     ..+.....+..+++++||++||+|
T Consensus       218 --------~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~-----~~~~~~~~~~~~l~~~ns~~nPii  284 (315)
T 4amj_A          218 --------KTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD-----LVPDWLFVAFNWLGYANSAMNPII  284 (315)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----SSCHHHHHHHHHHHHHGGGTHHHH
T ss_pred             --------ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHHhccccHHH
Confidence                    0111223478899999999999999999999999998876542     234567778889999999999999


Q ss_pred             HHhccccccC
Q psy5093         653 YACWSRDFRR  662 (662)
Q Consensus       653 Y~~~~~~fR~  662 (662)
                      |+ ++++||+
T Consensus       285 Y~-~~~~fR~  293 (315)
T 4amj_A          285 YC-RSPDFRK  293 (315)
T ss_dssp             GG-GSHHHHH
T ss_pred             Hc-CcHHHHH
Confidence            99 9999995

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.79  E-value=1.8e-18  Score=175.90  Aligned_cols=160  Identities=19%  Similarity=0.378  Sum_probs=120.3

Q ss_pred             cccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceec--------CCchhHhhhhhHHHHHhHHHHHHHHHHH
Q psy5093         423 MYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFT--------DSKGYLIFSSTISFYLPLLVMVFTYFKI  494 (662)
Q Consensus       423 ~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~--------~~~~y~~~~~~~~f~lP~~ii~~~Y~~I  494 (662)
                      +++++...++++.|+.+++..+|+++++...... .....|...        ....|.+...++.+++|+++++++|.+|
T Consensus       149 ~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i  227 (349)
T 1u19_A          149 FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE-GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL  227 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEE-TTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTT
T ss_pred             eccchhHHHHHHHHHHHHHHHHHHHHheeeeecc-CCceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788889999999999999998877644222 234457432        2245667777788999999999999999


Q ss_pred             HHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccccc
Q psy5093         495 YRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHI  574 (662)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (662)
                      ++.++++.++.+.                                                                   
T Consensus       228 ~~~l~~~~~~~~~-------------------------------------------------------------------  240 (349)
T 1u19_A          228 VFTVKEAAAQQQE-------------------------------------------------------------------  240 (349)
T ss_dssp             TTSSCSCCCSSCS-------------------------------------------------------------------
T ss_pred             HHHHHHhhhhhcc-------------------------------------------------------------------
Confidence            9877654322110                                                                   


Q ss_pred             ccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHH
Q psy5093         575 VKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYA  654 (662)
Q Consensus       575 ~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~  654 (662)
                              ..++.++++|+++++++++++|++||+|+.+..++..+.+..    .....+..+..+++++||++||+||+
T Consensus       241 --------~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~----~~~~~~~~~~~~l~~~ns~~nPiiY~  308 (349)
T 1u19_A          241 --------SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS----DFGPIFMTIPAFFAKTSAVYNPVIYI  308 (349)
T ss_dssp             --------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS----CCCHHHHHHHHHHGGGGGTHHHHHHH
T ss_pred             --------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCCc----ccchHHHHHHHHHHHHHHHHhHHHHH
Confidence                    001124678899999999999999999999998887765431    23445667788999999999999999


Q ss_pred             hccccccC
Q psy5093         655 CWSRDFRR  662 (662)
Q Consensus       655 ~~~~~fR~  662 (662)
                      +++++||+
T Consensus       309 ~~~~~fR~  316 (349)
T 1u19_A          309 MMNKQFRN  316 (349)
T ss_dssp             HTCHHHHH
T ss_pred             HHhHHHHH
Confidence            99999995

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=98.50  E-value=5.4e-08  Score=62.46  Aligned_cols=37  Identities=32%  Similarity=0.425  Sum_probs=33.2

Q ss_pred             HHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093         376 SAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI  412 (662)
Q Consensus       376 ~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~  412 (662)
                      ..++.+++++|+++||+||++.+++||++++++++++
T Consensus         3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~~   39 (40)
T 2koe_A            3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA   39 (40)
T ss_dssp             HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhhc
Confidence            4577889999999999999999999999999988664

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=98.30  E-value=7e-08  Score=61.91  Aligned_cols=29  Identities=41%  Similarity=0.650  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093         634 ISAVVTWLGWINSGMNPVIYACWSRDFRR  662 (662)
Q Consensus       634 ~~~~~~~l~~~ns~iNPiiY~~~~~~fR~  662 (662)
                      ++.++.+++++||++||+||++++++||+
T Consensus         2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~   30 (40)
T 2koe_A            2 VFAFASMLCLLNSTVNPIIYALRSKDLRH   30 (40)
T ss_dssp             HHHHHHHHHHHHHHSSTTTTBTTBHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            34578899999999999999999999985

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.29  E-value=4.8e-08  Score=59.29  Aligned_cols=30  Identities=37%  Similarity=0.855  Sum_probs=26.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy5093         590 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSA  619 (662)
Q Consensus       590 ~~k~~~~~~~vv~~f~icw~P~~i~~l~~~  619 (662)
                      |+|++|++++++++|++||+||++..++..
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~~   30 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHSL   30 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            457899999999999999999999887643

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.14  E-value=4e-07  Score=54.97  Aligned_cols=30  Identities=50%  Similarity=1.011  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCCccccch
Q psy5093         138 ASILNLCVISLDRYWAITDPLTYPSRMSTR  167 (662)
Q Consensus       138 ~s~~~l~~iaidRy~~I~~P~~y~~~~t~~  167 (662)
                      +|.+++++|++|||++|++|++|...++++
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~   31 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR   31 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence            588999999999999999999998877765

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=97.56  E-value=1.5e-05  Score=48.12  Aligned_cols=29  Identities=38%  Similarity=0.898  Sum_probs=25.3

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy5093         331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLS  359 (662)
Q Consensus       331 ~~~~~~~l~~i~~~f~i~~~P~~i~~~~~  359 (662)
                      |+|++|++.++++.|++||+||.+..++.
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~   29 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHS   29 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence            46789999999999999999999877653

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=96.11  E-value=0.0004  Score=48.26  Aligned_cols=29  Identities=31%  Similarity=0.414  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhheecccc
Q psy5093          53 LLVSTLSLFSLVTVFGNALVMIAVVRERY   81 (662)
Q Consensus        53 i~~~~~~ii~i~gl~gN~~vi~~i~~~~~   81 (662)
                      ++.++|.+++++|++||+++++++.++|.
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~   58 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKG   58 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecc
Confidence            77889999999999999999999888764

>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}

Probab=81.11  E-value=0.52  Score=24.43  Aligned_cols=18  Identities=50%  Similarity=0.711  Sum_probs=15.6

Q ss_pred             hhHHHHHHHhcccCCccc
Q psy5093         399 RDFRSKEKILNHKISPVV  416 (662)
Q Consensus       399 ~~fR~~~~~l~~~~~~~~  416 (662)
                      ++||+.++++|++.++.-
T Consensus         4 krfrkkfkklfkklspvi   21 (27)
T 2ket_A            4 KRFRKKFKKLFKKLSPVI   21 (27)
T ss_dssp             HHHHHHHHHHHHHHSCSC
T ss_pred             HHHHHHHHHHHHhcCccc
Confidence            689999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	662
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-18
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	3e-09
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	8e-09

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.6 bits (208), Expect = 2e-18
 Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 16/232 (6%)

Query: 13  DFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALV 72
           +F+   SN T +        ++    +  E W     Q ++L + + L  ++    N L 
Sbjct: 8   NFYVPFSNKTGVVRS----PFEAPQYYLAEPW-----QFSMLAAYMFLLIMLGFPINFLT 58

Query: 73  MIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLD 132
           +   V+ + L T  NY +++LA+AD  +       +     L   ++FG   C+      
Sbjct: 59  LYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT-SLHGYFVFGPTGCNLEGFFA 117

Query: 133 VLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWR 192
            L    ++ +L V++++RY  +  P++                  +     + P + W R
Sbjct: 118 TLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR 177

Query: 193 AVRN------EEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRA 238
            +                  T+++ ++I+   + F +PL+V+ F Y ++   
Sbjct: 178 YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFT 229

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
            EK+  + + I++  F++CWLP+  V           +      +   +  +    ++  
Sbjct: 246 AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP----IFMTIPAFFAKTSAVY 301

Query: 649 NPVIYACWSRDFRR 662
           NPVIY   ++ FR 
Sbjct: 302 NPVIYIMMNKQFRN 315

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.7 bits (133), Expect = 8e-09
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
            EK+  + + I++  F++CWLP+  V           +      +   +  +    ++  
Sbjct: 246 AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP----IFMTIPAFFAKTSAVY 301

Query: 390 NPVIYACWSRDFR 402
           NPVIY   ++ FR
Sbjct: 302 NPVIYIMMNKQFR 314

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	662
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.73

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-35  Score=295.91  Aligned_cols=285  Identities=19%  Similarity=0.347  Sum_probs=225.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhH
Q psy5093          48 AQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS  127 (662)
Q Consensus        48 ~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~  127 (662)
                      ++...++++++.+++++|++||+++++++.++|++|++.|++++|||++|++.++..+|..+.... .+.|..+...|+.
T Consensus        34 ~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~-~~~~~~~~~~c~~  112 (348)
T d1u19a_          34 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL-HGYFVFGPTGCNL  112 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-HTSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCccccCchhhhh
Confidence            445678889999999999999999999999999999999999999999999998888886555444 5678888999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccC
Q psy5093         128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFT  207 (662)
Q Consensus       128 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~  207 (662)
                      ..++..++..++.++++++++|||++|++|++|+. .++++....++.+|.+++++..++.+.......... ...|...
T Consensus       113 ~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  190 (348)
T d1u19a_         113 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGM-QCSCGID  190 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETT-TTEEECC
T ss_pred             hhhccccceeeecchhhhhhcccceeeeccccccc-cccccccccceeeehhhhheecccccccceeccCCc-ccccccc
Confidence            99999999999999999999999999999999765 467777788888899999988888877655433332 2222111


Q ss_pred             --------CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCc
Q psy5093         208 --------DSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMT  279 (662)
Q Consensus       208 --------~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (662)
                              ....+..+...+.+++|+++++++|.++.+.++++.++.                                 
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~---------------------------------  237 (348)
T d1u19a_         191 YYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ---------------------------------  237 (348)
T ss_dssp             CSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSS---------------------------------
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---------------------------------
Confidence                    122244555666778899999999999877654332211                                 


Q ss_pred             cCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy5093         280 LHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLS  359 (662)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~  359 (662)
                                                                +....+.++++|+++++++++++|++||+|+.+..++.
T Consensus       238 ------------------------------------------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~  275 (348)
T d1u19a_         238 ------------------------------------------QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI  275 (348)
T ss_dssp             ------------------------------------------CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------chhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhhee
Confidence                                                      01112334789999999999999999999999988877


Q ss_pred             HhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCc
Q psy5093         360 AVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISP  414 (662)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~  414 (662)
                      ...+.    .........+..++.++|+++||+||+++|++||+++++++|+.++
T Consensus       276 ~~~~~----~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c~~~  326 (348)
T d1u19a_         276 FTHQG----SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN  326 (348)
T ss_dssp             HHTTT----SCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCC
T ss_pred             eccCC----ccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCC
Confidence            66543    3334566778889999999999999999999999999988764443

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=2e-17  Score=165.74  Aligned_cols=157  Identities=20%  Similarity=0.407  Sum_probs=108.9

Q ss_pred             ceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCcee--------cCCchhHhhhhhHHHHHhHHHHHHHHHHHHHH
Q psy5093         426 QYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRA  497 (662)
Q Consensus       426 ~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~--------~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~  497 (662)
                      ++....+..+|..++++..|+.+.+....... ....|..        .....|.++...+.+++|+++++++|.+|.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~  229 (348)
T d1u19a_         151 NHAIMGVAFTWVMALACAAPPLVGWSRYIPEG-MQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFT  229 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGTTSSCCEEET-TTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTS
T ss_pred             ccccccceeeehhhhheecccccccceeccCC-cccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34445555666666667777666655442222 2233311        12234666777777899999999999999866


Q ss_pred             HHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCcccccccccccc
Q psy5093         498 AVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKN  577 (662)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (662)
                      ++++.++.+                                                                       
T Consensus       230 ~~~~~~~~~-----------------------------------------------------------------------  238 (348)
T d1u19a_         230 VKEAAAQQQ-----------------------------------------------------------------------  238 (348)
T ss_dssp             SCSCCCSSC-----------------------------------------------------------------------
T ss_pred             hcccccccc-----------------------------------------------------------------------
Confidence            554322111                                                                       


Q ss_pred             cchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhcc
Q psy5093         578 FSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWS  657 (662)
Q Consensus       578 ~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~  657 (662)
                          ....+.++++|++|++++++++|++||+|+.+..++....+.    ......+..++.+++++||++||+||++++
T Consensus       239 ----~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~----~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~  310 (348)
T d1u19a_         239 ----ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG----SDFGPIFMTIPAFFAKTSAVYNPVIYIMMN  310 (348)
T ss_dssp             ----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT----SCCCHHHHHHHHHHGGGGGTHHHHHHHHTC
T ss_pred             ----hhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCC----ccccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                011123468899999999999999999999999988766543    233456677888999999999999999999


Q ss_pred             ccccC
Q psy5093         658 RDFRR  662 (662)
Q Consensus       658 ~~fR~  662 (662)
                      ++||+
T Consensus       311 ~~fR~  315 (348)
T d1u19a_         311 KQFRN  315 (348)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99995