Psyllid ID: psy5099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50
Protein Sequence
MWNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEEEEcccEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccccccccHccccccccccEEEEEEccEEEEEEcccEEc
Coil and Loop (DISEMBL)
mwnkdynvnayhggveapdwltakhscgTTIIAVEfdggvvigadsrsst
Flexible Loop (DISEMBL)
mwnkdynvNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST
Low Complexity Region (SEG)
MWNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST
Disordered region (IsUnstruct)
****DYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIG*******
Disordered Region (DISOPRED)
******************DWLTAKHSCGTTIIAVEFDGGVVIGAD*****
Disordered Region (DISEMBL)
MWNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST
Disordered Region (DISPRO)
*****YN*NAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	50	2.2.26 [Sep-21-2011]
Q3MHN0	239	Proteasome subunit beta t	yes	N/A	0.68	0.142	0.676	1e-06
P28072	239	Proteasome subunit beta t	yes	N/A	0.66	0.138	0.666	4e-06
P28073	238	Proteasome subunit beta t	yes	N/A	0.86	0.180	0.6	4e-06
Q55GJ6	214	Proteasome subunit beta t	yes	N/A	0.72	0.168	0.583	7e-06
Q9DD33	217	Proteasome subunit beta t	N/A	N/A	0.64	0.147	0.656	1e-05
Q9PT26	217	Proteasome subunit beta t	N/A	N/A	0.64	0.147	0.656	1e-05
Q60692	238	Proteasome subunit beta t	yes	N/A	0.66	0.138	0.636	2e-05
Q8UW64	217	Proteasome subunit beta t	N/A	N/A	0.64	0.147	0.593	8e-05
Q8LD27	233	Proteasome subunit beta t	yes	N/A	0.6	0.128	0.7	0.0002

>sp|Q3MHN0|PSB6_BOVIN Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query: 17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          APDW   + S GTTI+AV+FDGGVV+GADSR++T
Sbjct: 23 APDWENREVSTGTTIMAVQFDGGVVLGADSRTTT 56

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. May catalyze basal processing of intracellular antigens.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|P28072|PSB6_HUMAN Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          PDW + + S GTTI+AV+FDGGVV+GADSR++T
Sbjct: 24 PDWESREVSTGTTIMAVQFDGGVVLGADSRTTT 56

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the peptidyl glutamyl-like activity. May catalyze basal processing of intracellular antigens.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P28073|PSB6_RAT Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 2/45 (4%)

Query: 8  VNAYHGGVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          V+A   G EA  PDW   + S GTTI+AV+FDGGVV+GADSR++T
Sbjct: 11 VSAPAFGPEALTPDWENREVSTGTTIMAVQFDGGVVLGADSRTTT 55

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q55GJ6|PSB6_DICDI Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 30/36 (83%)

Query: 15 VEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          +EAP+WL      GT+I+AVE+DGGV++GADSR++T
Sbjct: 1  MEAPEWLDNAVDLGTSIMAVEYDGGVIMGADSRTTT 36

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9DD33|PSB9_SALSA Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
          P WL+ +   GTTIIA+EFDGGVV+G+DSR S
Sbjct: 8  PGWLSEEVKTGTTIIAIEFDGGVVLGSDSRVS 39

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides.

Salmo salar (taxid: 8030)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9PT26|PSB9_ONCMY Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
          P WL+ +   GTTIIA+EFDGGVV+G+DSR S
Sbjct: 8  PGWLSEEVKTGTTIIAIEFDGGVVLGSDSRVS 39

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides.

Oncorhynchus mykiss (taxid: 8022)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q60692|PSB6_MOUSE Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 28/33 (84%)

Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          PDW   + S GTTI+AV+F+GGVV+GADSR++T
Sbjct: 23 PDWENREVSTGTTIMAVQFNGGVVLGADSRTTT 55

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. May catalyze basal processing of intracellular antigens.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q8UW64|PSB9_ORYLA Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
          P W++ +   GTTIIA+EF+GGVV+G+DSR S
Sbjct: 8  PQWISEEVKTGTTIIAIEFNGGVVLGSDSRVS 39

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides.

Oryzias latipes (taxid: 8090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q8LD27|PSB6_ARATH Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 21 LTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          L A HS GTTII V ++GGVV+GADSR+ST
Sbjct: 5  LDAPHSMGTTIIGVTYNGGVVLGADSRTST 34

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	50
346472801	242	hypothetical protein [Amblyomma maculatu	0.66	0.136	0.818	8e-08
321464090	225	hypothetical protein DAPPUDRAFT_306867 [	0.68	0.151	0.764	3e-07
405951012	218	Proteasome subunit beta type-6 [Crassost	0.68	0.155	0.735	1e-06
390338377	233	PREDICTED: proteasome subunit beta type-	1.0	0.214	0.529	2e-06
320164621	223	proteasome subunit beta type-6 [Capsaspo	0.7	0.156	0.685	2e-06
443696644	231	hypothetical protein CAPTEDRAFT_156053 [	0.66	0.142	0.696	3e-06
242002132	226	20S proteasome, regulatory subunit beta,	0.66	0.146	0.727	3e-06
157113425	228	proteasome subunit beta type 6,9 [Aedes	0.64	0.140	0.812	5e-06
94469190	228	proteasome subunit beta type 6 precursor	0.64	0.140	0.812	5e-06
170036732	227	proteasome subunit beta type 6 [Culex qu	0.64	0.140	0.812	6e-06

>gi|346472801|gb|AEO36245.1| hypothetical protein [Amblyomma maculatum]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          PDW+TA+HS GT+IIAVEFDGGVVIGAD+R+ST
Sbjct: 32 PDWMTAEHSTGTSIIAVEFDGGVVIGADTRTST 64

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321464090|gb|EFX75100.1| hypothetical protein DAPPUDRAFT_306867 [Daphnia pulex]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 33/34 (97%)

Query: 17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          +PDWLT++HS GT+I+AVEF+GGVVIGADSR+ST
Sbjct: 14 SPDWLTSEHSTGTSIMAVEFNGGVVIGADSRTST 47

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405951012|gb|EKC18961.1| Proteasome subunit beta type-6 [Crassostrea gigas]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 31/34 (91%)

Query: 17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          APDW +A+H  GTTI+AVE+DGGVVIGADSR++T
Sbjct: 6  APDWTSAEHETGTTIMAVEYDGGVVIGADSRTTT 39

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|390338377|ref|XP_003724763.1| PREDICTED: proteasome subunit beta type-6-like [Strongylocentrotus purpuratus]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)

Query: 1  MWNKDYNVNAY-HGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          M  K   V+++     + P+WL ++H  GTTI+AVEFDGGVVIGADSR++T
Sbjct: 5  MSEKKITVSSFCEANSQIPEWLRSEHLTGTTIMAVEFDGGVVIGADSRTTT 55

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|320164621|gb|EFW41520.1| proteasome subunit beta type-6 [Capsaspora owczarzaki ATCC 30864]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 33/35 (94%)

Query: 16 EAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          +APDWL+++H  GT+I+AVEF+GGVVIGADSR++T
Sbjct: 11 DAPDWLSSEHMTGTSIMAVEFNGGVVIGADSRTTT 45

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

>gi|443696644|gb|ELT97307.1| hypothetical protein CAPTEDRAFT_156053 [Capitella teleta]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 31/33 (93%)

Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          PDW++A+H  GTTI+AVE+DGGVV+GADSR++T
Sbjct: 21 PDWMSAEHLTGTTIVAVEYDGGVVVGADSRTTT 53

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|242002132|ref|XP_002435709.1| 20S proteasome, regulatory subunit beta, putative [Ixodes scapularis] gi|215499045|gb|EEC08539.1| 20S proteasome, regulatory subunit beta, putative [Ixodes scapularis]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/33 (72%), Positives = 30/33 (90%)

Query: 18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          PD+L A+HS GT+ IAVEFDGGVV+GADSR++T
Sbjct: 14 PDFLKAEHSTGTSTIAVEFDGGVVLGADSRTTT 46

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113425|ref|XP_001657823.1| proteasome subunit beta type 6,9 [Aedes aegypti] gi|108877753|gb|EAT41978.1| AAEL006441-PA [Aedes aegypti]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query: 19 DWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          DW  A HS GTTI+AVEFDGGVVIGADSR+ST
Sbjct: 8  DWRKAHHSTGTTIMAVEFDGGVVIGADSRTST 39

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94469190|gb|ABF18444.1| proteasome subunit beta type 6 precursor-like protein [Aedes aegypti]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query: 19 DWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          DW  A HS GTTI+AVEFDGGVVIGADSR+ST
Sbjct: 8  DWRKAHHSTGTTIMAVEFDGGVVIGADSRTST 39

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036732|ref|XP_001846216.1| proteasome subunit beta type 6 [Culex quinquefasciatus] gi|167879613|gb|EDS42996.1| proteasome subunit beta type 6 [Culex quinquefasciatus]

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query: 19 DWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          DW  A HS GTTI+AVEFDGGVVIGADSR+ST
Sbjct: 8  DWRNAHHSTGTTIMAVEFDGGVVIGADSRTST 39

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	50
UNIPROTKB|I3L3X7	102	PSMB6 "Proteasome subunit beta	0.74	0.362	0.641	1.1e-07
UNIPROTKB|Q3MHN0	239	PSMB6 "Proteasome subunit beta	0.68	0.142	0.676	1.9e-07
ZFIN|ZDB-GENE-990415-216	232	psmb6 "proteasome (prosome, ma	0.66	0.142	0.696	2.2e-07
RGD|61881	238	Psmb6 "proteasome (prosome, ma	0.86	0.180	0.6	2.4e-07
UNIPROTKB|P28072	239	PSMB6 "Proteasome subunit beta	0.74	0.154	0.641	2.5e-07
UNIPROTKB|E2R0B6	239	PSMB6 "Proteasome subunit beta	0.74	0.154	0.615	4.2e-07
UNIPROTKB|F1RFV5	241	PSMB6 "Proteasome subunit beta	0.74	0.153	0.641	4.3e-07
DICTYBASE|DDB_G0267390	214	psmB6 "proteasome subunit beta	0.72	0.168	0.583	4.9e-07
MGI|MGI:104880	238	Psmb6 "proteasome (prosome, ma	0.74	0.155	0.615	1.2e-06
ZFIN|ZDB-GENE-990415-140	218	psmb9a "proteasome (prosome, m	0.64	0.146	0.687	4.4e-06

UNIPROTKB|I3L3X7 PSMB6 "Proteasome subunit beta type-6" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query:    14 GVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             G EA  PDW + + S GTTI+AV+FDGGVV+GADSR++T
Sbjct:    15 GPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTT 53

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3MHN0 PSMB6 "Proteasome subunit beta type-6" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query:    17 APDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             APDW   + S GTTI+AV+FDGGVV+GADSR++T
Sbjct:    23 APDWENREVSTGTTIMAVQFDGGVVLGADSRTTT 56

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-990415-216 psmb6 "proteasome (prosome, macropain) subunit, beta type, 6" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 23/33 (69%), Positives = 28/33 (84%)

Query:    18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             PDW   + S GTTI+AVEFDGGVV+GADSR++T
Sbjct:    22 PDWTQREVSTGTTIMAVEFDGGVVMGADSRATT 54

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

RGD|61881 Psmb6 "proteasome (prosome, macropain) subunit, beta type 6" [Rattus norvegicus (taxid:10116)]

 Score = 121 (47.7 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query:     8 VNAYHGGVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             V+A   G EA  PDW   + S GTTI+AV+FDGGVV+GADSR++T
Sbjct:    11 VSAPAFGPEALTPDWENREVSTGTTIMAVQFDGGVVLGADSRTTT 55

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISO;ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P28072 PSMB6 "Proteasome subunit beta type-6" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query:    14 GVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             G EA  PDW + + S GTTI+AV+FDGGVV+GADSR++T
Sbjct:    18 GPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTT 56

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISS;NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0004175 "endopeptidase activity" evidence=NAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

UNIPROTKB|E2R0B6 PSMB6 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)

Query:    14 GVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             G EA  PDW + + S GTTI+AV+F+GGVV+GADSR++T
Sbjct:    18 GAEAITPDWESREVSTGTTIMAVQFEGGVVLGADSRTTT 56

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|F1RFV5 PSMB6 "Proteasome subunit beta type" [Sus scrofa (taxid:9823)]

 Score = 119 (46.9 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query:    14 GVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             G EA  PDW   + S GTTI+AV+FDGGVV+GADSR++T
Sbjct:    20 GHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTT 58

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

DICTYBASE|DDB_G0267390 psmB6 "proteasome subunit beta type 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 117 (46.2 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 21/36 (58%), Positives = 30/36 (83%)

Query:    15 VEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             +EAP+WL      GT+I+AVE+DGGV++GADSR++T
Sbjct:     1 MEAPEWLDNAVDLGTSIMAVEYDGGVIMGADSRTTT 36

GO:0008233 "peptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IPI

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:104880 Psmb6 "proteasome (prosome, macropain) subunit, beta type 6" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query:    14 GVEA--PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
             G EA  PDW   + S GTTI+AV+F+GGVV+GADSR++T
Sbjct:    17 GPEALTPDWENREVSTGTTIMAVQFNGGVVLGADSRTTT 55

GO:0000502 "proteasome complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-990415-140 psmb9a "proteasome (prosome, macropain) subunit, beta type, 9a" [Danio rerio (taxid:7955)]

 Score = 109 (43.4 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)

Query:    18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS 49
             P WL+ +   GTTIIAV FDGGVVIG+DSR S
Sbjct:     9 PGWLSEEVKTGTTIIAVTFDGGVVIGSDSRVS 40

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LD27	PSB6_ARATH	3, ., 4, ., 2, 5, ., 1	0.7	0.6	0.1287	yes	N/A
Q55GJ6	PSB6_DICDI	3, ., 4, ., 2, 5, ., 1	0.5833	0.72	0.1682	yes	N/A
P28073	PSB6_RAT	3, ., 4, ., 2, 5, ., 1	0.6	0.86	0.1806	yes	N/A
P28072	PSB6_HUMAN	3, ., 4, ., 2, 5, ., 1	0.6666	0.66	0.1380	yes	N/A
Q60692	PSB6_MOUSE	3, ., 4, ., 2, 5, ., 1	0.6363	0.66	0.1386	yes	N/A
Q3MHN0	PSB6_BOVIN	3, ., 4, ., 2, 5, ., 1	0.6764	0.68	0.1422	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	50
cd03762	188	cd03762, proteasome_beta_type_6, proteasome beta t	4e-09
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	2e-05
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	2e-05
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	7e-05
cd03763	189	cd03763, proteasome_beta_type_7, proteasome beta t	1e-04
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	0.001
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	0.001
TIGR03690	219	TIGR03690, 20S_bact_beta, proteasome, beta subunit	0.003

>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit

 Score = 48.8 bits (117), Expect = 4e-09
 Identities = 19/22 (86%), Positives = 22/22 (100%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTIIAVE+DGGVV+GADSR+ST
Sbjct: 1  TTIIAVEYDGGVVLGADSRTST 22

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
          TTI+ ++   GVV+ AD+R+S
Sbjct: 1  TTIVGIKGKDGVVLAADTRAS 21

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 26 SCGTTIIAVEFDGGVVIGADSRSST 50
            GTTI+ ++   GVV+ AD R++ 
Sbjct: 2  KTGTTIVGIKGKDGVVLAADKRATR 26

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score = 37.1 bits (87), Expect = 7e-05
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
          TTI+ ++   GVV+ AD R +
Sbjct: 1  TTIVGIKGKDGVVLAADKRVT 21

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 12/20 (60%), Positives = 16/20 (80%)

Query: 29 TTIIAVEFDGGVVIGADSRS 48
          TTI+ V F  GVV+GAD+R+
Sbjct: 1  TTIVGVVFKDGVVLGADTRA 20

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score = 33.8 bits (78), Expect = 0.001
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          GTT + ++   GVV+ AD R++
Sbjct: 30 GTTTVGIKGKDGVVLAADKRAT 51

Length = 236

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score = 33.7 bits (78), Expect = 0.001
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          GT++IA+++  GV+I AD+  S
Sbjct: 2  GTSVIAIKYKDGVIIAADTLGS 23

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          GTTI+A+ + GGV++  D R++
Sbjct: 2  GTTIVALTYPGGVLMAGDRRAT 23

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	50
KOG0173|consensus	271		99.52
KOG0174|consensus	224		99.02
KOG0185|consensus	256		98.78
KOG0175|consensus	285		98.66
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	98.63
PTZ00488	247	Proteasome subunit beta type-5; Provisional	98.61
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	98.48
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	98.47
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	98.43
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	98.43
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	98.43
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	98.4
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	98.39
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	98.39
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	98.38
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	98.37
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	98.36
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	98.33
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	98.31
PRK03996	241	proteasome subunit alpha; Provisional	98.29
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	98.28
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	98.28
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	98.23
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	98.23
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	98.21
PTZ00246	253	proteasome subunit alpha; Provisional	98.2
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	98.19
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	98.17
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	98.16
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	98.12
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	98.11
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	98.08
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	98.07
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	97.95
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	97.74
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	97.51
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	97.44
KOG0176|consensus	241		96.39
KOG0184|consensus	254		96.13
KOG0178|consensus	249		92.63
KOG0179|consensus	235		90.69
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	89.87
KOG0181|consensus	233		85.76
KOG0177|consensus	200		81.11

>KOG0173|consensus

Probab=99.52  E-value=1.1e-14  Score=101.34  Aligned_cols=45  Identities=31%  Similarity=0.419  Sum_probs=42.4

Q ss_pred             hhhhhhhhhcCCCCCCccccccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099           4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus         4 ~n~~Rn~~l~~~~~~~~~~~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      +||+||+.|.+++++  .|...+|||||+|+.|+||||||||+|+|.
T Consensus        15 ~nc~rn~~l~~~g~k--~p~~tkTGTtIvgv~~k~gvIlgADtRaT~   59 (271)
T KOG0173|consen   15 DNCQRNAALLKKGLK--APKATKTGTTIVGVIFKDGVILGADTRATE   59 (271)
T ss_pred             hhhhhHHHHHhcCCC--CCcccccCcEEEEEEeCCeEEEeecccccC
Confidence            799999999999888  788899999999999999999999999984

>KOG0174|consensus

Probab=99.02  E-value=2.5e-10  Score=78.03  Aligned_cols=31  Identities=65%  Similarity=0.912  Sum_probs=27.9

Q ss_pred             ccccccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          20 WLTAKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        20 ~~~~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ....+++|||||+|++|+||||||||+|+|+
T Consensus        11 ~~~~evstGTTImAv~y~gGVvlGaDSRTs~   41 (224)
T KOG0174|consen   11 LPKEEVSTGTTIMAVEYDGGVVLGADSRTST   41 (224)
T ss_pred             CcccccccCceEEEEEEcCcEEEeccCCccc
Confidence            3456899999999999999999999999984

>KOG0185|consensus

Probab=98.78  E-value=5.4e-09  Score=72.72  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=29.4

Q ss_pred             CCccccccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          18 PDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        18 ~~~~~~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .....+++.|||||+|++|+||||||||++.|.
T Consensus        31 ~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSY   63 (256)
T KOG0185|consen   31 IQRTLNPIVTGTSVLALKYKDGVVIAADTLGSY   63 (256)
T ss_pred             cccccCceeccceEEEEEecCceEEEecccccc
Confidence            445678999999999999999999999999874

>KOG0175|consensus

Probab=98.66  E-value=2e-08  Score=70.74  Aligned_cols=28  Identities=46%  Similarity=0.786  Sum_probs=25.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+..+|||++|++|++|||+|+|+|||+
T Consensus        66 i~~~hGTTTLAF~f~~GvivAvDSRAs~   93 (285)
T KOG0175|consen   66 IKFAHGTTTLAFKFKGGVIVAVDSRASA   93 (285)
T ss_pred             eeecCCceEEEEEecCcEEEEEeccccc
Confidence            3468999999999999999999999985

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=98.63  E-value=2.4e-08  Score=64.58  Aligned_cols=23  Identities=43%  Similarity=0.629  Sum_probs=21.6

Q ss_pred             CccEEEEEeCCeEEEeeeCCCCC
Q psy5099          28 GTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        28 GTTivgi~~~~GVIlaaD~rat~   50 (50)
                      |||++||+|+||||||||+|+|.
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~   23 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTL   23 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEe
Confidence            79999999999999999999873

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=98.61  E-value=3.5e-08  Score=66.26  Aligned_cols=27  Identities=33%  Similarity=0.728  Sum_probs=25.0

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      -++++|+|+|||+++||||||+|+|.+
T Consensus        34 ~~~~~G~T~IgIk~kdgVvlAaD~r~~   60 (247)
T PTZ00488         34 IEFAHGTTTLAFKYGGGIIIAVDSKAT   60 (247)
T ss_pred             cccCCCceEEEEEeCCEEEEEEecCcc
Confidence            367899999999999999999999976

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=98.48  E-value=1.3e-07  Score=60.36  Aligned_cols=23  Identities=43%  Similarity=0.814  Sum_probs=22.0

Q ss_pred             cCccEEEEEeCCeEEEeeeCCCC
Q psy5099          27 CGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        27 tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|+|||+++||||||+|+|.+
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~   23 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGS   23 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCccc
Confidence            69999999999999999999976

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=98.47  E-value=1.5e-07  Score=60.95  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=23.4

Q ss_pred             cccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          25 HSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        25 ~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      +..|+|+|||+|+||||||+|+|.+.
T Consensus         5 ~~~G~Tvigik~~dgVvlaaD~r~~~   30 (212)
T cd03757           5 TDNGGTVLAIAGNDFAVIAGDTRLSE   30 (212)
T ss_pred             cCCCccEEEEEcCCEEEEEECCcccc
Confidence            35799999999999999999999873

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2.3e-07  Score=61.79  Aligned_cols=26  Identities=35%  Similarity=0.583  Sum_probs=23.5

Q ss_pred             cccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          25 HSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        25 ~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..+|||+|||+++||||||+|+|+|+
T Consensus        27 ~~~gtT~vgik~~dgVVlaadkr~t~   52 (236)
T COG0638          27 KRGGTTTVGIKGKDGVVLAADKRATS   52 (236)
T ss_pred             HcCCceEEEEEecCEEEEEEeccCCC
Confidence            45679999999999999999999874

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=98.43  E-value=2.3e-07  Score=59.24  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=21.8

Q ss_pred             cCccEEEEEeCCeEEEeeeCCCC
Q psy5099          27 CGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        27 tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .|+|++||+++||||||+|+|.+
T Consensus         2 ~G~t~igik~~dgVvlaad~~~~   24 (195)
T cd03759           2 NGGAVVAMAGKDCVAIASDLRLG   24 (195)
T ss_pred             CCceEEEEEcCCEEEEEEccccc
Confidence            69999999999999999999976

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=98.43  E-value=1.9e-07  Score=60.18  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=24.7

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+++|+|+||++|+||||||+|+|.+
T Consensus        22 ~a~~~G~t~igik~~dgVvlaad~r~~   48 (213)
T cd03753          22 EAIKLGSTAIGIKTKEGVVLAVEKRIT   48 (213)
T ss_pred             HHHhcCCCEEEEEeCCEEEEEEecccC
Confidence            356899999999999999999999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=98.40  E-value=2.3e-07  Score=59.56  Aligned_cols=27  Identities=19%  Similarity=0.394  Sum_probs=24.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+.+|+|+||++|+||||||+|+|.+
T Consensus        22 ~~~~~G~tvigi~~~dgVvlaaD~~~~   48 (209)
T cd01911          22 EAVKNGSTAVGIKGKDGVVLAVEKKVT   48 (209)
T ss_pred             HHHHcCCCEEEEEECCEEEEEEEecCC
Confidence            356899999999999999999999976

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=98.39  E-value=2.3e-07  Score=60.53  Aligned_cols=22  Identities=45%  Similarity=0.608  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      |||+||+|+||||||+|+|+|.
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~   22 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTL   22 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEe
Confidence            7999999999999999999873

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=98.39  E-value=2.7e-07  Score=59.82  Aligned_cols=27  Identities=30%  Similarity=0.478  Sum_probs=24.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+.+|+|+|||+++||||||+|+|.+
T Consensus        24 ~av~~G~tvigi~~~dgvvlaad~r~~   50 (224)
T TIGR03633        24 EAVKRGTTAVGIKTKDGVVLAVDKRIT   50 (224)
T ss_pred             HHHHcCCCEEEEEECCEEEEEEeccCC
Confidence            357899999999999999999999975

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=98.38  E-value=1.5e-07  Score=58.18  Aligned_cols=25  Identities=40%  Similarity=0.589  Sum_probs=22.8

Q ss_pred             cccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          25 HSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        25 ~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +.+|+|+|||+++||||||+|+|.+
T Consensus         1 v~~G~t~vgi~~~dgvvla~d~~~~   25 (190)
T PF00227_consen    1 VNNGTTVVGIKGKDGVVLAADKRIS   25 (190)
T ss_dssp             HHTSBEEEEEEESSEEEEEEEEEEE
T ss_pred             CCCCeEEEEEEECCEEEEEEccccc
Confidence            4689999999999999999999865

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=98.37  E-value=2.7e-07  Score=60.27  Aligned_cols=22  Identities=45%  Similarity=0.607  Sum_probs=20.6

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      |||+||+|+||||||+|+|+|.
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~   22 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTL   22 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEe
Confidence            7999999999999999999873

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=98.36  E-value=3.2e-07  Score=59.89  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=24.7

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+++|+|+|||+++||||||+|+|.+
T Consensus        22 ~av~~G~t~igik~~dgVvlaad~~~~   48 (227)
T cd03750          22 AAVSSGAPSVGIKAANGVVLATEKKVP   48 (227)
T ss_pred             HHHHcCCCEEEEEeCCEEEEEEeecCC
Confidence            456899999999999999999999976

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=98.33  E-value=4.2e-07  Score=58.52  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=24.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+++|+|+||++++||||||+|+|.+
T Consensus        23 ~av~~G~t~igik~~dgvvla~d~~~~   49 (211)
T cd03756          23 EAVKRGTTALGIKCKEGVVLAVDKRIT   49 (211)
T ss_pred             HHHHcCCCEEEEEECCEEEEEEeccCC
Confidence            457899999999999999999999975

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=98.31  E-value=6.4e-07  Score=56.14  Aligned_cols=22  Identities=45%  Similarity=0.767  Sum_probs=21.0

Q ss_pred             CccEEEEEeCCeEEEeeeCCCC
Q psy5099          28 GTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        28 GTTivgi~~~~GVIlaaD~rat   49 (50)
                      |||++||+++||||||+|+|.+
T Consensus         1 G~t~igi~~~dgVvla~d~~~~   22 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRAS   22 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCccc
Confidence            8999999999999999999976

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>PRK03996 proteasome subunit alpha; Provisional

Probab=98.29  E-value=5.4e-07  Score=59.12  Aligned_cols=27  Identities=33%  Similarity=0.481  Sum_probs=24.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+.+|+|+|||+++||||||+|+|.+
T Consensus        31 ~av~~G~t~igik~~dgVvlaad~r~~   57 (241)
T PRK03996         31 EAVKRGTTAVGVKTKDGVVLAVDKRIT   57 (241)
T ss_pred             HHHHhCCCEEEEEeCCEEEEEEeccCC
Confidence            347899999999999999999999976

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=98.28  E-value=8e-07  Score=57.96  Aligned_cols=23  Identities=43%  Similarity=0.863  Sum_probs=21.7

Q ss_pred             cCccEEEEEeCCeEEEeeeCCCC
Q psy5099          27 CGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        27 tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +|+|+|||+++||||||+|+|.+
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~   23 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRAT   23 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccc
Confidence            48999999999999999999987

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=98.28  E-value=6.6e-07  Score=57.78  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=24.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +.+.+|+|+|||+++||||||+|+|.+
T Consensus        24 ~a~~~G~t~igi~~~dgVvla~d~r~~   50 (213)
T cd03752          24 EAISHAGTCLGILAKDGIVLAAEKKVT   50 (213)
T ss_pred             HHHhcCCCEEEEEeCCEEEEEEEeccC
Confidence            356899999999999999999999976

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=98.23  E-value=1e-06  Score=56.69  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=24.3

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +.+.+|+|+|||+++||||||+|+|.+
T Consensus        22 ~av~~G~t~Igik~~dgVvlaad~~~~   48 (207)
T cd03755          22 EAVRKGTTAVGVRGKDCVVLGVEKKSV   48 (207)
T ss_pred             HHHHcCCCEEEEEeCCEEEEEEecCCC
Confidence            457899999999999999999999864

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=98.23  E-value=8.9e-07  Score=57.74  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=24.3

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+..|+|+|||+++||||||+|+|.+
T Consensus        25 ~a~~~G~tvIgik~kdgVvla~d~r~~   51 (212)
T cd03751          25 KAVENSGTAIGIRCKDGVVLAVEKLVT   51 (212)
T ss_pred             HHHhcCCCEEEEEeCCEEEEEEEcccc
Confidence            346889999999999999999999976

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=98.21  E-value=1.2e-06  Score=56.76  Aligned_cols=27  Identities=15%  Similarity=0.175  Sum_probs=24.3

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+..|+|+|||+++||||||+|+|.+
T Consensus        22 ~av~~G~t~IgIk~~dgVvlaad~r~~   48 (211)
T cd03749          22 EAVKQGSATVGLKSKTHAVLVALKRAT   48 (211)
T ss_pred             HHHhcCCCEEEEEeCCEEEEEEeccCc
Confidence            346789999999999999999999975

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=98.20  E-value=1.2e-06  Score=57.99  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+..|+|+|||+++||||||+|+|.+.
T Consensus        27 av~~g~t~Igik~~dgVvlaad~r~s~   53 (253)
T PTZ00246         27 AINNASLTVGILCKEGVILGADKPISS   53 (253)
T ss_pred             HHHhCCCEEEEEECCEEEEEEecCCCC
Confidence            467899999999999999999999863

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=98.19  E-value=1.6e-06  Score=54.57  Aligned_cols=22  Identities=86%  Similarity=1.238  Sum_probs=20.3

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      ||++||+|+||||||+|+|.++
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~   22 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTST   22 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccC
Confidence            6999999999999999999863

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=98.17  E-value=1.9e-06  Score=54.73  Aligned_cols=22  Identities=45%  Similarity=0.804  Sum_probs=20.4

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      ||++||+++||||||+|+|.+.
T Consensus         1 tT~igi~~kdgVvla~d~r~~~   22 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATA   22 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccC
Confidence            6999999999999999999863

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=98.16  E-value=2.1e-06  Score=54.39  Aligned_cols=22  Identities=55%  Similarity=0.913  Sum_probs=20.3

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      ||++||+++||||||+|+|.+.
T Consensus         1 tt~igi~~~dgvvlaad~r~~~   22 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATE   22 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCccc
Confidence            7999999999999999999763

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=98.12  E-value=2.5e-06  Score=54.51  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+||++++||||||+|+|.|
T Consensus         2 ~t~igi~~~dgVvlaad~r~~   22 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAA   22 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccc
Confidence            799999999999999999986

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=98.11  E-value=3.2e-06  Score=51.95  Aligned_cols=21  Identities=43%  Similarity=0.658  Sum_probs=19.8

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|.+
T Consensus         1 tt~igi~~~dgvvla~d~~~~   21 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVT   21 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccC
Confidence            689999999999999999976

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>cd01912 proteasome_beta proteasome beta subunit

Probab=98.08  E-value=3.9e-06  Score=52.35  Aligned_cols=21  Identities=48%  Similarity=0.724  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+||++++||||||+|+|.+
T Consensus         1 tt~i~i~~~dgVvla~d~~~~   21 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRAS   21 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcc
Confidence            699999999999999999976

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=98.07  E-value=4e-06  Score=52.78  Aligned_cols=22  Identities=41%  Similarity=0.611  Sum_probs=20.3

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      ||++||+|+||||||+|+|.++
T Consensus         1 tt~iai~~~dgvvia~d~r~~~   22 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASM   22 (188)
T ss_pred             CcEEEEEeCCEEEEEEcccccc
Confidence            6999999999999999999763

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=97.95  E-value=9.7e-06  Score=52.74  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=21.7

Q ss_pred             cCccEEEEEeCCeEEEeeeCCCC
Q psy5099          27 CGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        27 tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .|+|++||+++||||||+|+|.+
T Consensus        28 ~g~t~igi~~~d~Vvlaad~r~~   50 (215)
T cd03754          28 AGLTSVAVRGKDCAVVVTQKKVP   50 (215)
T ss_pred             CCccEEEEEeCCEEEEEEecccc
Confidence            69999999999999999999975

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=97.74  E-value=2.3e-05  Score=52.18  Aligned_cols=25  Identities=12%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSR   47 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~r   47 (50)
                      ..++.|+|+|||+++||||||+|++
T Consensus        22 kav~~g~T~VGIk~kdgVVLaaek~   46 (228)
T TIGR03691        22 KGIARGRSVVVLTYADGILFVAENP   46 (228)
T ss_pred             HHHHcCCcEEEEEeCCeEEEEEecC
Confidence            3467899999999999999999986

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=97.51  E-value=0.0001  Score=49.66  Aligned_cols=21  Identities=33%  Similarity=0.678  Sum_probs=19.0

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      |=+|||+++||||||||+|++
T Consensus         1 ~~~vGIk~kdGVVLaadkr~~   21 (236)
T cd03765           1 TYCLGIKLDAGLVFASDSRTN   21 (236)
T ss_pred             CeEEEEEeCCeEEEEEccCcc
Confidence            457999999999999999976

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=97.44  E-value=0.00018  Score=41.71  Aligned_cols=21  Identities=48%  Similarity=0.676  Sum_probs=19.5

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      +|++|++++||||||+|++.+
T Consensus         1 ~t~i~i~~~~gvila~d~~~~   21 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLS   21 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccC
Confidence            689999999999999999875

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>KOG0176|consensus

Probab=96.39  E-value=0.0031  Score=43.84  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=24.8

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .++.|+|.+||+.++|||||.+.|.|+
T Consensus        30 AikLGsTaIGv~TkEgVvL~vEKritS   56 (241)
T KOG0176|consen   30 AIKLGSTAIGVKTKEGVVLAVEKRITS   56 (241)
T ss_pred             HHhcCCceeeeeccceEEEEEeccccC
Confidence            468999999999999999999999874

>KOG0184|consensus

Probab=96.13  E-value=0.0043  Score=43.49  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=23.0

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+-.+.|.|||+++|||||++|...+
T Consensus        29 KAven~~T~IGIk~kdGVVl~vEKli~   55 (254)
T KOG0184|consen   29 KAVENSGTCIGIKCKDGVVLAVEKLIT   55 (254)
T ss_pred             HHHhcCCcEEEEecCCeEEEEEeeeec
Confidence            345678999999999999999998654

>KOG0178|consensus

Probab=92.63  E-value=0.11  Score=36.52  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=23.3

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+++-.|.+|+..+|||||+++.+.+
T Consensus        27 ais~aGt~iGila~DGvvLa~e~k~t   52 (249)
T KOG0178|consen   27 AISHAGTCIGILASDGVVLAGENKVT   52 (249)
T ss_pred             HHhhhcceeEEEecCceEEEeecccc
Confidence            46888899999999999999998865

>KOG0179|consensus

Probab=90.69  E-value=0.26  Score=34.43  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             ccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          26 SCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        26 ~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..|-|+|||.-.|=.|+|+|+|.|.
T Consensus        27 ~NGGT~vaIaG~dFavvA~DTR~s~   51 (235)
T KOG0179|consen   27 DNGGTTVAIAGEDFAVVAGDTRMSS   51 (235)
T ss_pred             cCCceEEEEcCCceEEEeccccccc
Confidence            4688999999999999999999763

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.87  E-value=0.26  Score=33.20  Aligned_cols=23  Identities=43%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             cCccEEEEEeCCeEEEeeeCCCC
Q psy5099          27 CGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        27 tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ++|||++++-++=|+||+|...|
T Consensus         3 h~TTiv~vr~~gkv~iagDGQVt   25 (178)
T COG5405           3 HMTTIVAVRKNGKVVIAGDGQVT   25 (178)
T ss_pred             eeEEEEEEeeCCeEEEecCceEe
Confidence            68999999999999999998765

>KOG0181|consensus

Probab=85.76  E-value=0.83  Score=31.86  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSR   47 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~r   47 (50)
                      .++.|.+-+|++..||||||++..
T Consensus        28 Av~~G~~SvGi~A~nGvVlatekk   51 (233)
T KOG0181|consen   28 AVVNGQTSVGIKAANGVVLATEKK   51 (233)
T ss_pred             HHhCCCCceeeeecCceEEEeccC
Confidence            467899999999999999999874

>KOG0177|consensus

Probab=81.11  E-value=1.4  Score=30.20  Aligned_cols=19  Identities=16%  Similarity=0.350  Sum_probs=17.4

Q ss_pred             cEEEEEeCCeEEEeeeCCC
Q psy5099          30 TIIAVEFDGGVVIGADSRS   48 (50)
Q Consensus        30 Tivgi~~~~GVIlaaD~ra   48 (50)
                      +++||+-+|=||+|+|+-+
T Consensus         3 ~llGIkg~dfvilAsDt~~   21 (200)
T KOG0177|consen    3 TLLGIKGPDFVILASDTSA   21 (200)
T ss_pred             eEEEeecCCEEEEeecchh
Confidence            7899999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	50
1iru_H	205	Crystal Structure Of The Mammalian 20s Proteasome A		3e-04

>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/22 (77%), Positives = 22/22 (100%)
Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+AV+FDGGVV+GADSR++T
Sbjct: 1  TTIMAVQFDGGVVLGADSRTTT 22

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	50
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	6e-09
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	7e-09
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	2e-08
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	6e-08
1iru_J	205	20S proteasome; cell cycle, immune response, prote	7e-08
1iru_N	219	20S proteasome; cell cycle, immune response, prote	8e-08
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	1e-07
1iru_H	205	20S proteasome; cell cycle, immune response, prote	1e-07
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	1e-07
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	2e-07
1iru_M	213	20S proteasome; cell cycle, immune response, prote	2e-07
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	2e-07
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	2e-07
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	2e-07
1iru_L	204	20S proteasome; cell cycle, immune response, prote	3e-07
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	3e-07
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	3e-07
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	4e-07
1iru_I	234	20S proteasome; cell cycle, immune response, prote	4e-07
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	4e-07
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	4e-07
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	5e-07
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	2e-06
1iru_K	201	20S proteasome; cell cycle, immune response, prote	2e-06
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	1e-05
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	3e-05
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	1e-04
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	2e-04

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score = 47.6 bits (114), Expect = 6e-09
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 23 AKHSCGTTIIAVEFDGGVVIGADSRSST 50
           + S G +I+AV F  GV++GADSR++T
Sbjct: 4  GEVSLGASIMAVTFKDGVILGADSRTTT 31

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score = 47.8 bits (114), Expect = 7e-09
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 12 HGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          H           K + GTT +A  F GG+++  DSR++ 
Sbjct: 59 HTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATA 97

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score = 46.2 bits (110), Expect = 2e-08
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query: 26 SCGTTIIAVEFDGGVVIGADSRSST 50
          S GTTI+ V+F+ GVVI AD+RS+ 
Sbjct: 27 STGTTIVGVKFNNGVVIAADTRSTQ 51

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score = 44.9 bits (107), Expect = 6e-08
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          GTT + +     V++  + R + 
Sbjct: 8  GTTTVGITLKDAVIMATERRVTM 30

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score = 44.8 bits (107), Expect = 7e-08
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 24 KHSCGTTIIAVEFDGGVVIGADSRSST 50
              G  ++A++    V I AD R   
Sbjct: 4  MSYNGGAVMAMKGKNCVAIAADRRFGI 30

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score = 44.5 bits (106), Expect = 8e-08
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          GT+++ V+F+GGVVI AD   S 
Sbjct: 8  GTSVLGVKFEGGVVIAADMLGSY 30

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score = 44.3 bits (105), Expect = 1e-07
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G TI+ +  +   V+  D+R+ T
Sbjct: 9  GGTILGIAGEDFAVLAGDTRNIT 31

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score = 44.1 bits (105), Expect = 1e-07
 Identities = 17/22 (77%), Positives = 22/22 (100%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+AV+FDGGVV+GADSR++T
Sbjct: 1  TTIMAVQFDGGVVLGADSRTTT 22

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score = 44.1 bits (104), Expect = 1e-07
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 10 AYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          A   G        A+   GTTI+A+++ GGVV+  D RS+ 
Sbjct: 39 ASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQ 79

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 10/23 (43%), Positives = 18/23 (78%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          GT++I++++D GV+I AD+  S 
Sbjct: 8  GTSVISMKYDNGVIIAADNLGSY 30

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G TI+A+  +   ++ +D+R S 
Sbjct: 9  GGTILAIAGEDFAIVASDTRLSE 31

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score = 43.3 bits (103), Expect = 2e-07
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+AVEFDGGVV+G+DSR S 
Sbjct: 1  TTIMAVEFDGGVVVGSDSRVSA 22

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 1/22 (4%), Positives = 3/22 (13%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          + +  V                
Sbjct: 2  SHMQMVPPSAYDRAITVFSPEG 23

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+ V+F+ GVVI AD+RS+ 
Sbjct: 1  TTIVGVKFNNGVVIAADTRSTQ 22

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score = 43.0 bits (102), Expect = 3e-07
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT +A +F  GV++ ADSR++ 
Sbjct: 1  TTTLAFKFRHGVIVAADSRATA 22

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score = 42.9 bits (102), Expect = 3e-07
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT + +    GVV+  + R++ 
Sbjct: 1  TTTVGLVCKDGVVMATEKRATM 22

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score = 43.0 bits (102), Expect = 3e-07
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT +A  F GG+++  DSR++ 
Sbjct: 1  TTTLAFRFQGGIIVAVDSRATA 22

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score = 43.0 bits (102), Expect = 4e-07
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G  ++A+     V I  D R  +
Sbjct: 8  GGIVVAMTGKDCVAIACDLRLGS 30

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score = 42.7 bits (101), Expect = 4e-07
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI  V +  G+V+GAD+R++ 
Sbjct: 1  TTIAGVVYKDGIVLGADTRATE 22

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score = 42.8 bits (101), Expect = 4e-07
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 6  YNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
          YN    + G             GT++I++++D GV+I AD+  S 
Sbjct: 19 YNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSY 63

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score = 42.6 bits (101), Expect = 4e-07
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI  + F  GV++GAD+R++ 
Sbjct: 1  TTIAGLVFRDGVILGADTRATN 22

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score = 42.7 bits (100), Expect = 5e-07
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 1  MWNKDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSST 50
                +      G+E+ D   A H  GTTI+A+ + GGV++  D R++ 
Sbjct: 42 RIGHRSHSTRGGDGMESGD--LAPH--GTTIVALTYKGGVLLAGDRRATQ 87

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score = 41.0 bits (97), Expect = 2e-06
 Identities = 2/22 (9%), Positives = 8/22 (36%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
            I+ +     V++ +    + 
Sbjct: 2  DIILGIRVQDSVILASSKAVTR 23

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score = 40.7 bits (96), Expect = 2e-06
 Identities = 3/22 (13%), Positives = 12/22 (54%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
            +I ++    V++ +D  +++
Sbjct: 2  EYLIGIQGPDYVLVASDRVAAS 23

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 38.7 bits (90), Expect = 1e-05
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+A+ + GGV++  D R++ 
Sbjct: 1  TTIVALTYKGGVLLAGDRRATQ 22

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180

 Score = 37.7 bits (87), Expect = 3e-05
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
           TTI AV+  G   +  D + +
Sbjct: 5  ATTIFAVQHKGRSAMSGDGQVT 26

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174

 Score = 36.1 bits (83), Expect = 1e-04
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
          TTI++V  +G VV+G D + S
Sbjct: 1  TTIVSVRRNGQVVVGGDGQVS 21

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171

 Score = 35.0 bits (80), Expect = 2e-04
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
          TTI+ V  +G  V+G D + +
Sbjct: 1  TTILVVRRNGQTVMGGDGQVT 21

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	50
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	99.49
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	98.81
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	98.75
1iru_N	219	20S proteasome; cell cycle, immune response, prote	98.68
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	98.66
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	98.63
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	98.62
1iru_E	241	20S proteasome; cell cycle, immune response, prote	98.6
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	98.58
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	98.58
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	98.58
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	98.57
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	98.57
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	98.57
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	98.56
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	98.56
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	98.56
1iru_B	233	20S proteasome; cell cycle, immune response, prote	98.55
1iru_M	213	20S proteasome; cell cycle, immune response, prote	98.55
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	98.54
1iru_C	261	20S proteasome; cell cycle, immune response, prote	98.54
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	98.54
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	98.52
1iru_G	254	20S proteasome; cell cycle, immune response, prote	98.52
1iru_D	248	20S proteasome; cell cycle, immune response, prote	98.51
1iru_F	263	20S proteasome; cell cycle, immune response, prote	98.5
1iru_A	246	20S proteasome; cell cycle, immune response, prote	98.5
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	98.49
1iru_J	205	20S proteasome; cell cycle, immune response, prote	98.49
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	98.47
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	98.42
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	98.42
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	98.33
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	98.33
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	98.31
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	98.28
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	98.27
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	98.23
1iru_H	205	20S proteasome; cell cycle, immune response, prote	98.16
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	98.15
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	98.15
1iru_I	234	20S proteasome; cell cycle, immune response, prote	98.15
1iru_L	204	20S proteasome; cell cycle, immune response, prote	98.14
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	98.13
1iru_K	201	20S proteasome; cell cycle, immune response, prote	98.1
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	98.09
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	98.09
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	98.07

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=99.49  E-value=6.9e-15  Score=97.73  Aligned_cols=44  Identities=39%  Similarity=0.609  Sum_probs=20.3

Q ss_pred             hhhhhhhhhcCCCCCCccccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099           4 KDYNVNAYHGGVEAPDWLTAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus         4 ~n~~Rn~~l~~~~~~~~~~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +||+||++|.+.+.+  .+..+++|||+|||+|+||||||+|+|++
T Consensus         7 ~~~~rn~~~~~~~~~--~~kav~~GtTivgi~~kdGVVlAaD~r~t   50 (261)
T 3nzj_H            7 DNYQRNNFLAENSHT--QPKATSTGTTIVGVKFNNGVVIAADTRST   50 (261)
T ss_dssp             -------------------------CCEEEEEETTEEEEEEECCEE
T ss_pred             hhhhhHHHHHhcCCC--CCcccccCceEEEEEECCEEEEEEcCCcc
Confidence            799999999988776  67889999999999999999999999976

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=98.81  E-value=2.1e-09  Score=72.37  Aligned_cols=47  Identities=30%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             hhhhhhh--hhcCC---CCCC--ccccccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099           4 KDYNVNA--YHGGV---EAPD--WLTAKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus         4 ~n~~Rn~--~l~~~---~~~~--~~~~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .||+||.  +|...   +...  ....++.+|||+|||+|+||||||+|+|+|+
T Consensus        26 ~~~~~~~~~~~l~~~~~~~~~~~~ya~~v~~GtTiVgi~~kdGVVlAaD~r~t~   79 (291)
T 2jay_A           26 TDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQ   79 (291)
T ss_dssp             --------------------------------CCEEEEEETTEEEEEECCC---
T ss_pred             HHHhhhcChhhccccccccCcCccccccccCCcEEEEEEECCEEEEEECCCccC
Confidence            5889998  44432   2210  1133489999999999999999999999873

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=98.75  E-value=4.1e-09  Score=66.07  Aligned_cols=29  Identities=45%  Similarity=0.763  Sum_probs=26.2

Q ss_pred             cccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          21 LTAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        21 ~~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+++++|||+|||+++||||||+|+|+|
T Consensus         2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~   30 (205)
T 1ryp_H            2 KKGEVSLGASIMAVTFKDGVILGADSRTT   30 (205)
T ss_dssp             CTTCCBCCCCEEEEEETTEEEEEECCCEE
T ss_pred             CCCCCcCCceEEEEEeCCEEEEEEcCCcc
Confidence            35678999999999999999999999976

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=98.68  E-value=6e-09  Score=65.86  Aligned_cols=28  Identities=43%  Similarity=0.693  Sum_probs=25.6

Q ss_pred             ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          22 TAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        22 ~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+++.+|||+|||+++||||||+|+|+|
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~   29 (219)
T 1iru_N            2 QNPMVTGTSVLGVKFEGGVVIAADMLGS   29 (219)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEE
T ss_pred             CCCccCCceEEEEEeCCEEEEEECCccc
Confidence            4578899999999999999999999976

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=98.66  E-value=9.8e-09  Score=65.70  Aligned_cols=28  Identities=36%  Similarity=0.635  Sum_probs=25.7

Q ss_pred             ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          22 TAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        22 ~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ++++++|||+|||+++||||||+|+|++
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~   29 (233)
T 1ryp_N            2 QQPIVTGTSVISMKYDNGVIIAADNLGS   29 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEE
T ss_pred             cccccCCceEEEEEECCEEEEEEcCccc
Confidence            4578899999999999999999999976

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=98.63  E-value=1.9e-08  Score=64.19  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=25.3

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .++++|||+|||+++||||||+|+|+++
T Consensus        29 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~   56 (233)
T 1yar_A           29 EAVKKGSTALGMKFANGVLLISDKKVRS   56 (233)
T ss_dssp             HHHTTSCCEEEEEETTEEEEEECCCCCC
T ss_pred             HHHhcCCcEEEEEECCEEEEEEeccCCc
Confidence            3478999999999999999999999874

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=98.62  E-value=2.3e-08  Score=64.23  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=25.2

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..+.+|||+|||+++||||||+|+|+++
T Consensus        26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~   53 (244)
T 1ryp_C           26 ESISHAGTAIGIMASDGIVLAAERKVTS   53 (244)
T ss_dssp             HHHTTSCCEEEEEETTEEEEEEECSSCC
T ss_pred             HHHhcCCcEEEEEeCCEEEEEEeeccCC
Confidence            3478999999999999999999999874

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=98.60  E-value=2.7e-08  Score=63.89  Aligned_cols=27  Identities=22%  Similarity=0.430  Sum_probs=24.7

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ++.+|||+|||+++||||||+|+|+++
T Consensus        30 av~~Gtt~vgi~~~dgVvlaaD~r~~~   56 (241)
T 1iru_E           30 AIKLGSTAIGIQTSEGVCLAVEKRITS   56 (241)
T ss_dssp             HHTTSCCEEEEEETTEEEEEEECCCCC
T ss_pred             HHHcCCcEEEEEcCCEEEEEEecccCC
Confidence            478899999999999999999999874

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=98.58  E-value=3e-08  Score=63.62  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=24.8

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+.+|||+|||+++||||||+|+|+++
T Consensus        22 av~~Gtt~vgi~~~dgVvlaaD~r~~~   48 (242)
T 1ryp_E           22 AIKLGSTAIGIATKEGVVLGVEKRATS   48 (242)
T ss_dssp             HHTTSCCEEEEECSSCEEEEEECCCSS
T ss_pred             HHHcCCCEEEEEECCEEEEEEeecCCC
Confidence            478999999999999999999999874

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=98.58  E-value=3.1e-08  Score=63.95  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=24.8

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ++.+|||+|||+++||||||+|+|++.
T Consensus        30 av~~Gtt~vgi~~~dgVvlaaD~r~~~   56 (246)
T 1j2p_A           30 AVKRGATAIGIKCKEGVILIADKRVGS   56 (246)
T ss_dssp             HHHTSCCEEEEEETTEEEEEEECCCSC
T ss_pred             HHHcCCcEEEEEECCEEEEEEeccCCc
Confidence            478999999999999999999999873

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=98.58  E-value=2.8e-08  Score=63.54  Aligned_cols=27  Identities=15%  Similarity=0.169  Sum_probs=24.6

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+++|||+|||+++||||||+|+|+++
T Consensus        27 av~~Gtt~vgi~~~dgVvlaaD~r~~~   53 (233)
T 1ryp_F           27 AIKQGSVTVGLRSNTHAVLVALKRNAD   53 (233)
T ss_dssp             HHHTSCCEEEEECSSEEEEEEECCCSS
T ss_pred             HHHcCCCEEEEEcCCEEEEEEEecccc
Confidence            367899999999999999999999874

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=98.57  E-value=2.9e-08  Score=61.80  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=22.6

Q ss_pred             ccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          26 SCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        26 ~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+|||++||+++||||||+|+|+|
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t   26 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVT   26 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEE
T ss_pred             CCCeEEEEEEECCEEEEEECCCcc
Confidence            579999999999999999999976

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=98.57  E-value=2.6e-08  Score=65.45  Aligned_cols=29  Identities=34%  Similarity=0.598  Sum_probs=26.2

Q ss_pred             cccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          21 LTAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        21 ~~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ...++++|||+|||+++||||||+|+|+|
T Consensus        34 ~~~av~~GtT~vgi~~~dgVVlAaD~r~t   62 (266)
T 1g0u_M           34 TQQPIVTGTSVISMKYDNGVIIAADNLGS   62 (266)
T ss_dssp             CCCCCEEECCEEEEEETTEEEEEEECCEE
T ss_pred             hccCcccCceEEEEEECCEEEEEEcCCcc
Confidence            34678899999999999999999999976

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=98.57  E-value=2.1e-08  Score=63.69  Aligned_cols=27  Identities=19%  Similarity=0.448  Sum_probs=20.3

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+.+|||+|||+++||||||+|+|++
T Consensus         3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~   29 (217)
T 1yar_H            3 QTLETGTTTVGITLKDAVIMATERRVT   29 (217)
T ss_dssp             ------CCEEEEEETTEEEEEECCCEE
T ss_pred             CCCCCCccEEEEEeCCEEEEEEcCCCC
Confidence            367889999999999999999999976

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=98.56  E-value=2.5e-08  Score=67.11  Aligned_cols=28  Identities=39%  Similarity=0.738  Sum_probs=20.4

Q ss_pred             ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          22 TAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        22 ~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..++.+|||+|||+|+||||||+|+|+|
T Consensus        69 ~~~v~~GtT~vgik~~dGVVlAaD~r~t   96 (287)
T 3nzj_K           69 KIKIAHGTTTLAFRFQGGIIVAVDSRAT   96 (287)
T ss_dssp             -------CCEEEEEETTEEEEEECCCEE
T ss_pred             hhheccCceEEEEEECCEEEEEEccccc
Confidence            4578999999999999999999999986

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=98.56  E-value=3.5e-08  Score=63.36  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=24.7

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+++|||+|||+++||||||+|+|+++
T Consensus        24 av~~Gtt~vgi~~~dgVvlaaD~r~~~   50 (241)
T 1ryp_D           24 AVKRGTCAVGVKGKNCVVLGCERRSTL   50 (241)
T ss_dssp             HHTTSCCEEEEECSSCEEEEEECCCSS
T ss_pred             HHHcCCCEEEEEeCCEEEEEEeeccCc
Confidence            468899999999999999999999863

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=98.56  E-value=3.4e-08  Score=63.86  Aligned_cols=27  Identities=30%  Similarity=0.462  Sum_probs=24.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +.+++|||+|||+++||||||+|+|++
T Consensus        26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~   52 (250)
T 1ryp_B           26 TAVKQGVTSLGIKATNGVVIATEKKSS   52 (250)
T ss_dssp             HHHHTSCCEEEEEETTEEEEEEECCCS
T ss_pred             HHHHcCCcEEEEEECCEEEEEEeccCC
Confidence            346899999999999999999999986

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=98.55  E-value=3.5e-08  Score=63.00  Aligned_cols=27  Identities=19%  Similarity=0.414  Sum_probs=24.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .++++|||+|||+++||||||+|+|++
T Consensus        26 ~av~~Gtt~vgi~~~dgVvlaaD~r~~   52 (233)
T 1iru_B           26 AAVAGGAPSVGIKAANGVVLATEKKQK   52 (233)
T ss_dssp             HHHHTSCCEEEEECSSCEEEEEECCCC
T ss_pred             HHHHcCCcEEEEEeCCEEEEEEEecCC
Confidence            346899999999999999999999986

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=98.55  E-value=3.3e-08  Score=62.09  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=23.7

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+.+|||+|||+++||||||+|+|++
T Consensus         5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~   30 (213)
T 1iru_M            5 YVFNGGTILAIAGEDFAIVASDTRLS   30 (213)
T ss_dssp             CCCCCCEEEEEEETTEEEEEEECCEE
T ss_pred             ccCCCCcEEEEEeCCEEEEEECCCcc
Confidence            35689999999999999999999975

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=98.54  E-value=3e-08  Score=64.17  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=25.3

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .++.+|||+|||+++||||||+|+|+++
T Consensus        25 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~   52 (244)
T 1ryp_G           25 KAVENGTTSIGIKCNDGVVFAVEKLITS   52 (244)
T ss_dssp             HHHHTSCCEEEEEETTEEEEEEEEECCC
T ss_pred             HHHHCCCCEEEEEECCEEEEEEecccCC
Confidence            4578999999999999999999999874

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=98.54  E-value=4e-08  Score=64.13  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=25.2

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..+.+|||+|||+++||||||+|+|+++
T Consensus        26 ~av~~Gtt~vgi~~~dgVVlaaD~r~~~   53 (261)
T 1iru_C           26 EAIGHAGTCLGILANDGVLLAAERRNIH   53 (261)
T ss_dssp             HHHTTSCCEEEEBCSSEEEEEECCCCCC
T ss_pred             HHHhcCCcEEEEEeCCEEEEEEecccCC
Confidence            3478999999999999999999999873

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=98.54  E-value=3e-08  Score=65.47  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=25.2

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..+++|||+|||+|+||||||+|+|+++
T Consensus        33 ~av~~Gtt~vgi~~~dgVVlaaD~r~~~   60 (264)
T 3h4p_A           33 EAVRRGTTAIGIACKDGVVLAVDRRITS   60 (264)
T ss_dssp             HHHHHSCCEEEECCSSEEEEEEECCCCS
T ss_pred             HHHhcCCcEEEEEECCEEEEEEecCccC
Confidence            3468999999999999999999999873

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=98.52  E-value=5.9e-08  Score=62.37  Aligned_cols=26  Identities=12%  Similarity=0.065  Sum_probs=24.1

Q ss_pred             cccc-CccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSC-GTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~t-GTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+++ |||+|||+++||||||+|+|++
T Consensus        25 av~~~Gtt~vgi~~~dgVvlaad~r~~   51 (243)
T 1ryp_A           25 ATNQTNINSLAVRGKDCTVVISQKKVP   51 (243)
T ss_dssp             HTTTTCCCEEEEECSSEEEEEEECCCC
T ss_pred             HHhcCCCcEEEEEeCCEEEEEEEecCC
Confidence            4678 9999999999999999999986

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=98.52  E-value=3.5e-08  Score=64.19  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=25.2

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..+++|||+|||+++||||||+|+|+++
T Consensus        28 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~   55 (254)
T 1iru_G           28 KAVENSSTAIGIRCKDGVVFGVEKLVLS   55 (254)
T ss_dssp             HHHHTSCCEEEEECSSBEEEEEEEECSC
T ss_pred             HHHhcCCCEEEEEECCEEEEEEecccCC
Confidence            3478999999999999999999999873

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=98.51  E-value=4.7e-08  Score=63.30  Aligned_cols=27  Identities=26%  Similarity=0.320  Sum_probs=24.8

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+++|||+|||+++||||||+|+|+++
T Consensus        25 av~~Gtt~vgi~~~dgVvlaaD~r~~~   51 (248)
T 1iru_D           25 AVKKGSTAVGVRGRDIVVLGVEKKSVA   51 (248)
T ss_dssp             HHHTSCCEEEECCSSEEEEEECCCCCC
T ss_pred             HHHcCCCEEEEEeCCEEEEEEeecccc
Confidence            478999999999999999999999874

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=98.50  E-value=4.9e-08  Score=64.03  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=24.6

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+++|||+|||+++||||||+|+|+++
T Consensus        28 av~~Gtt~vgi~~~dgVVlaaD~r~~~   54 (263)
T 1iru_F           28 AVKQGSATVGLKSKTHAVLVALKRAQS   54 (263)
T ss_dssp             HHHHSCCEEEEECSSEEEEEEECCCSS
T ss_pred             HHHcCCcEEEEEeCCEEEEEEeccccc
Confidence            367899999999999999999999873

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=98.50  E-value=5.6e-08  Score=62.57  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=24.0

Q ss_pred             cccc-CccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSC-GTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~t-GTTivgi~~~~GVIlaaD~rat   49 (50)
                      ++++ |||+|||+++||||||+|+|++
T Consensus        31 av~~~Gtt~vgi~~~dgVvlaaD~r~~   57 (246)
T 1iru_A           31 AINQGGLTSVAVRGKDCAVIVTQKKVP   57 (246)
T ss_dssp             HHHTTCCEEEEEECSSEEEEEEECCCC
T ss_pred             HHhcCCCCEEEEEeCCEEEEEEeecCC
Confidence            4677 9999999999999999999986

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=98.49  E-value=5.1e-08  Score=60.86  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=23.1

Q ss_pred             cccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          25 HSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        25 ~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+|||+|||+++||||||+|+|++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~   29 (204)
T 1ryp_J            5 SINGGIVVAMTGKDCVAIACDLRLG   29 (204)
T ss_dssp             GSSCCEEEEEECSSEEEEEEECCEE
T ss_pred             CCCCCeEEEEEeCCEEEEEEcCCcc
Confidence            4689999999999999999999975

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=98.49  E-value=5.1e-08  Score=60.90  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=23.1

Q ss_pred             cccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          25 HSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        25 ~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+|||+|||+++||||||+|+|++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~   29 (205)
T 1iru_J            5 SYNGGAVMAMKGKNCVAIAADRRFG   29 (205)
T ss_dssp             TSSCCEEEEEECSSEEEEEEECCEE
T ss_pred             cCCCCeEEEEEeCCEEEEEECCccc
Confidence            4689999999999999999999975

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=98.47  E-value=5.9e-08  Score=61.80  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+.+|||+|||+++||||||+|+|.|
T Consensus         5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~   30 (222)
T 1ryp_M            5 YGDNGGTILGIAGEDFAVLAGDTRNI   30 (222)
T ss_dssp             CCCCCCEEEEEECSSCEEEEEECCEE
T ss_pred             cccCCccEEEEEeCCEEEEEEecccc
Confidence            45689999999999999999999975

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=98.42  E-value=7e-08  Score=64.93  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=25.2

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..+++|||+|||+|+||||||+|+|+++
T Consensus        29 kAv~~GtT~Vgik~kdGVVlAaD~r~t~   56 (288)
T 3nzj_F           29 KAVENGTTSIGIKCNDGVVFAVEKLITS   56 (288)
T ss_dssp             HHHHTSCCEEEEEETTEEEEEEEEEECC
T ss_pred             HHHhcCCcEEEEEECCEEEEEEcCCccc
Confidence            3578999999999999999999999763

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=98.42  E-value=9.3e-08  Score=64.47  Aligned_cols=27  Identities=37%  Similarity=0.720  Sum_probs=24.7

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+.+|||+|||+|+||||||+|+|++
T Consensus        60 ~Av~~GtTiVgIk~kdGVVlAaD~r~t   86 (294)
T 1q5r_H           60 DLAPHGTTIVALTYKGGVLLAGDRRAT   86 (294)
T ss_dssp             CCSCBCCCEEEEECSSCEEEEECCCEE
T ss_pred             HHHhcCceEEEEEECCEEEEEEcCccc
Confidence            347899999999999999999999976

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=98.33  E-value=2.5e-07  Score=60.93  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=24.2

Q ss_pred             ccccccCccEEEEEeCCeEEEeeeCCC
Q psy5099          22 TAKHSCGTTIIAVEFDGGVVIGADSRS   48 (50)
Q Consensus        22 ~~~~~tGTTivgi~~~~GVIlaaD~ra   48 (50)
                      ...+++|||+|||+|+||||||+|+|.
T Consensus        21 ~~av~~GtT~vgi~~kdgVVlaadkr~   47 (248)
T 3mi0_A           21 RKGIARAKSVVALAYAGGVLFVAENPS   47 (248)
T ss_dssp             HHHHHTSCCEEEEEETTEEEEEEECCC
T ss_pred             HHHHhCCCcEEEEEeCCEEEEEEeCCC
Confidence            345789999999999999999999984

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=98.33  E-value=1.7e-07  Score=59.70  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             CccEEEEEeCCeEEEeeeCCCC
Q psy5099          28 GTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        28 GTTivgi~~~~GVIlaaD~rat   49 (50)
                      |||+|||+++||||||+|+|++
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~   22 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRAS   22 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEE
T ss_pred             CccEEEEEECCEEEEEEcCCcc
Confidence            8999999999999999999976

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=98.31  E-value=2.6e-07  Score=60.60  Aligned_cols=26  Identities=23%  Similarity=0.446  Sum_probs=23.7

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRS   48 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~ra   48 (50)
                      ..+++|||+|||+|+||||||+|+|.
T Consensus        22 ~av~~Gtt~vgi~~~dgVVlaaD~rs   47 (259)
T 1q5q_A           22 KGIARGRSVVVLTFRDGVLFVAENPS   47 (259)
T ss_dssp             HHHHTSCCEEEEECSSEEEEEECCSC
T ss_pred             HHHhcCCcEEEEEeCCEEEEEEecCC
Confidence            46789999999999999999999983

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=98.28  E-value=3.2e-07  Score=56.17  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=20.0

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|+|
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~   21 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVT   21 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEECCCcc
Confidence            799999999999999999976

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=98.27  E-value=2.7e-07  Score=57.21  Aligned_cols=21  Identities=81%  Similarity=1.208  Sum_probs=20.0

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~   21 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVS   21 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEE
T ss_pred             CeEEEEEeCCeEEEEECCccc
Confidence            799999999999999999976

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=98.23  E-value=5.3e-07  Score=55.41  Aligned_cols=21  Identities=48%  Similarity=0.737  Sum_probs=20.0

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|+|
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t   21 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVS   21 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEECCCCc
Confidence            799999999999999999976

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=98.16  E-value=7.8e-07  Score=55.50  Aligned_cols=21  Identities=76%  Similarity=1.222  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~   21 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTT   21 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CcEEEEEeCCEEEEEEcCCcc
Confidence            799999999999999999976

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=98.15  E-value=8.8e-07  Score=55.14  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|++
T Consensus         1 tt~vgi~~~dgVvlaad~r~~   21 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRAT   21 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEE
T ss_pred             CcEEEEEeCCEEEEEECCCcC
Confidence            799999999999999999976

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=98.15  E-value=7.3e-07  Score=57.94  Aligned_cols=21  Identities=48%  Similarity=0.854  Sum_probs=20.0

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+|+||||||+|+|++
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t   21 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRAT   21 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEE
T ss_pred             CeEEEEEeCCEEEEEECCCcc
Confidence            799999999999999999975

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=98.15  E-value=1e-06  Score=56.75  Aligned_cols=22  Identities=45%  Similarity=0.821  Sum_probs=20.3

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      ||+|||+|+||||||+|+|+++
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~   22 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATE   22 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEES
T ss_pred             CeEEEEEeCCEEEEEEcCCccc
Confidence            7999999999999999999763

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=98.14  E-value=9e-07  Score=55.17  Aligned_cols=21  Identities=48%  Similarity=0.786  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~   21 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRAT   21 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEeCCEEEEEEcCCcc
Confidence            799999999999999999976

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=98.13  E-value=9.8e-07  Score=55.42  Aligned_cols=21  Identities=43%  Similarity=0.877  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~   21 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRAT   21 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CcEEEEEeCCEEEEEEcCCcc
Confidence            799999999999999999976

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=98.10  E-value=1.4e-06  Score=54.23  Aligned_cols=21  Identities=14%  Similarity=0.238  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|++
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~   22 (201)
T 1iru_K            2 EYLIGIQGPDYVLVASDRVAA   22 (201)
T ss_dssp             CCEEEEECSSEEEEEEECCEE
T ss_pred             ceEEEEEeCCEEEEEEcCccc
Confidence            799999999999999999976

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=98.09  E-value=1.4e-06  Score=53.92  Aligned_cols=21  Identities=10%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|.+
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~   22 (198)
T 1ryp_K            2 DIILGIRVQDSVILASSKAVT   22 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEE
T ss_pred             ceEEEEEECCEEEEEECCCcc
Confidence            799999999999999999975

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=98.09  E-value=1.3e-06  Score=55.69  Aligned_cols=21  Identities=62%  Similarity=0.979  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t   21 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRST   21 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEEcCCcc
Confidence            799999999999999999975

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=98.07  E-value=1.5e-06  Score=55.75  Aligned_cols=21  Identities=43%  Similarity=0.885  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+++||||||+|+|++
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~   21 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRAT   21 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEECCCCC
Confidence            799999999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	50
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-06
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	3e-06
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	8e-06
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	9e-06
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	1e-05
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-05
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-05
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	2e-05
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	2e-05
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-05
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	2e-05
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	3e-05
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	3e-05
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	4e-05
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	5e-05
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	6e-05
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	7e-05
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	9e-05
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	1e-04
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	1e-04
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	1e-04
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	1e-04
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	1e-04
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-04
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-04
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-04
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	2e-04
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	3e-04
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	3e-04
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	3e-04
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	3e-04
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	3e-04
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	4e-04
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	5e-04
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	8e-04
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	0.002
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	0.002

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 39.6 bits (92), Expect = 2e-06
 Identities = 6/23 (26%), Positives = 14/23 (60%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G +++ + F  GV+  A++ S+ 
Sbjct: 19 GRSVVVLTFRDGVLFVAENPSTA 41

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.0 bits (90), Expect = 3e-06
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
           TTI AV+  G   +  D + +
Sbjct: 5  ATTIFAVQHKGRSAMSGDGQVT 26

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 8e-06
 Identities = 10/22 (45%), Positives = 18/22 (81%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          GT++I++++D GV+I AD+  S
Sbjct: 8  GTSVISMKYDNGVIIAADNLGS 29

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.8 bits (87), Expect = 9e-06
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI++V  +G VV+G D + S 
Sbjct: 1  TTIVSVRRNGQVVVGGDGQVSL 22

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.0 bits (85), Expect = 1e-05
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
          TTI+ V  +G  V+G D + +
Sbjct: 1  TTILVVRRNGQTVMGGDGQVT 21

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 2e-05
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G +I+AV F  GV++GADSR++T
Sbjct: 9  GASIMAVTFKDGVILGADSRTTT 31

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 37.1 bits (85), Expect = 2e-05
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+A+ + GGV++  D R++ 
Sbjct: 1  TTIVALTYKGGVLLAGDRRATQ 22

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (85), Expect = 2e-05
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT +A  F GG+++  DSR++ 
Sbjct: 1  TTTLAFRFQGGIIVAVDSRATA 22

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 2e-05
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+ V+F+ GVVI AD+RS+ 
Sbjct: 1  TTIVGVKFNNGVVIAADTRSTQ 22

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (84), Expect = 2e-05
 Identities = 17/22 (77%), Positives = 22/22 (100%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI+AV+FDGGVV+GADSR++T
Sbjct: 1  TTIMAVQFDGGVVLGADSRTTT 22

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 2e-05
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G TI+ +  +   V+  D+R+ T
Sbjct: 9  GGTILGIAGEDFAVLAGDTRNIT 31

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.7 bits (84), Expect = 3e-05
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 26 SCGTTIIAVEFDGGVVIGADSRSS 49
            GT+++ V+F+GGVVI AD   S
Sbjct: 6  VTGTSVLGVKFEGGVVIAADMLGS 29

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.3 bits (83), Expect = 3e-05
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TTI  V +  G+V+GAD+R++ 
Sbjct: 1  TTIAGVVYKDGIVLGADTRATE 22

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.3 bits (83), Expect = 4e-05
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT +A +F  GV++ ADSR++ 
Sbjct: 1  TTTLAFKFRHGVIVAADSRATA 22

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (82), Expect = 5e-05
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G  ++A++    V I AD R   
Sbjct: 7  GGAVMAMKGKNCVAIAADRRFGI 29

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.6 bits (81), Expect = 6e-05
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G TI+A+  +   ++ +D+R S
Sbjct: 9  GGTILAIAGEDFAIVASDTRLS 30

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (80), Expect = 7e-05
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G  ++A+     V I  D R  +
Sbjct: 8  GGIVVAMTGKDCVAIACDLRLGS 30

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 9e-05
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G T + ++   GVVI  + +SS
Sbjct: 31 GVTSLGIKATNGVVIATEKKSS 52

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.1 bits (80), Expect = 1e-04
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G+T + ++F  GV++ +D +  
Sbjct: 22 GSTALGMKFANGVLLISDKKVR 43

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 1e-04
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G+T I +    GVV+G + R++
Sbjct: 26 GSTAIGIATKEGVVLGVEKRAT 47

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 34.8 bits (79), Expect = 1e-04
 Identities = 4/22 (18%), Positives = 10/22 (45%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT + +     V++  + R + 
Sbjct: 1  TTTVGITLKDAVIMATERRVTM 22

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.6 bits (79), Expect = 1e-04
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G T I ++   GV++ AD R  +
Sbjct: 31 GATAIGIKCKEGVILIADKRVGS 53

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.6 bits (79), Expect = 1e-04
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          GTT I ++ + GVV   +   ++
Sbjct: 30 GTTSIGIKCNDGVVFAVEKLITS 52

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.3 bits (78), Expect = 2e-04
 Identities = 5/23 (21%), Positives = 12/23 (52%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
            T + +  + GV++ A+ R+  
Sbjct: 30 AGTCLGILANDGVLLAAERRNIH 52

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.4 bits (78), Expect = 2e-04
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 29 TTIIAVEFDGGVVIGADSRSST 50
          TT + +    GVV+  + R++ 
Sbjct: 1  TTTVGLVCKDGVVMATEKRATM 22

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.3 bits (78), Expect = 2e-04
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
            T I +    G+V+ A+ + +
Sbjct: 31 AGTAIGIMASDGIVLAAERKVT 52

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.9 bits (77), Expect = 2e-04
 Identities = 4/22 (18%), Positives = 10/22 (45%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G   + ++   GVV+  + +  
Sbjct: 31 GAPSVGIKAANGVVLATEKKQK 52

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.0 bits (77), Expect = 3e-04
 Identities = 2/21 (9%), Positives = 8/21 (38%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
            I+ +     V++ +    +
Sbjct: 2  DIILGIRVQDSVILASSKAVT 22

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.9 bits (77), Expect = 3e-04
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G+T + V     VV+G + +S 
Sbjct: 28 GSTAVGVRGRDIVVLGVEKKSV 49

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.8 bits (77), Expect = 3e-04
 Identities = 4/23 (17%), Positives = 11/23 (47%)

Query: 28 GTTIIAVEFDGGVVIGADSRSST 50
          G+  + ++     V+ A  R+ +
Sbjct: 29 GSATVGLKSKTHAVLVALKRAQS 51

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.5 bits (76), Expect = 3e-04
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G+T I ++   GV +  + R +
Sbjct: 27 GSTAIGIQTSEGVCLAVEKRIT 48

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.4 bits (76), Expect = 3e-04
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G T +AV      VI    +  
Sbjct: 35 GLTSVAVRGKDCAVIVTQKKVP 56

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.5 bits (76), Expect = 4e-04
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          GT  + V+    VV+G + RS+
Sbjct: 28 GTCAVGVKGKNCVVLGCERRST 49

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.9 bits (74), Expect = 5e-04
 Identities = 3/21 (14%), Positives = 11/21 (52%)

Query: 29 TTIIAVEFDGGVVIGADSRSS 49
            +I ++    V++ +D  ++
Sbjct: 2  EYLIGIQGPDYVLVASDRVAA 22

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.3 bits (73), Expect = 8e-04
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
          G+  + +  +   V+ A  R++
Sbjct: 31 GSVTVGLRSNTHAVLVALKRNA 52

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 31.5 bits (71), Expect = 0.002
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 28 GTTIIAVEFDGGVVIGADSRSS 49
           +T I +    GVV G +    
Sbjct: 33 SSTAIGIRCKDGVVFGVEKLVL 54

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.6 bits (71), Expect = 0.002
 Identities = 4/27 (14%), Positives = 9/27 (33%)

Query: 23 AKHSCGTTIIAVEFDGGVVIGADSRSS 49
          A +      +AV      V+ +  +  
Sbjct: 25 ATNQTNINSLAVRGKDCTVVISQKKVP 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	50
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.15
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	98.96
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	98.92
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	98.91
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	98.9
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	98.86
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	98.65
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	98.61
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	98.59
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	98.58
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	98.56
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	98.55
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	98.52
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	98.51
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	98.5
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	98.5
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	98.49
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	98.46
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	98.46
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	98.45
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	98.44
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	98.44
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	98.43
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	98.41
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	98.4
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	98.39
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	98.38
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	98.37
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	98.36
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	98.3
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	98.3
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	98.28
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	98.27
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	98.26
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	98.26
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	98.12
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	98.07

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=7.2e-12  Score=75.02  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=22.2

Q ss_pred             cCccEEEEEeCCeEEEeeeCCCC
Q psy5099          27 CGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        27 tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +|||||||+|+||||||||+|+|
T Consensus         4 ~GTTivai~~~dGVvlAaDtR~S   26 (180)
T d2z3ba1           4 HATTIFAVQHKGRSAMSGDGQVT   26 (180)
T ss_dssp             CCCCEEEEEETTEEEEEECCCEE
T ss_pred             CCeEEEEEEECCEEEEEECCccc
Confidence            69999999999999999999987

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=98.96  E-value=1.1e-10  Score=69.07  Aligned_cols=22  Identities=45%  Similarity=0.684  Sum_probs=20.8

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      ||||||+|+||||||||+|+|.
T Consensus         1 TTivai~~~dGVVlAaDtRaS~   22 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSL   22 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE
T ss_pred             CeEEEEEECCEEEEEECCCccc
Confidence            8999999999999999999973

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=2.1e-10  Score=71.52  Aligned_cols=28  Identities=36%  Similarity=0.635  Sum_probs=26.3

Q ss_pred             ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          22 TAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        22 ~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ++++.+|||+|||+|+||||||||+|+|
T Consensus         2 ~~~i~tGtTivgi~~~dgVvlaaD~r~s   29 (233)
T d1ryp2_           2 QQPIVTGTSVISMKYDNGVIIAADNLGS   29 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEE
T ss_pred             CCCccccceEEEEEECCEEEEEECCCcc
Confidence            6789999999999999999999999975

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.91  E-value=2e-10  Score=70.90  Aligned_cols=28  Identities=43%  Similarity=0.693  Sum_probs=25.9

Q ss_pred             ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          22 TAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        22 ~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +.+++||||+|||+++||||||+|+|.|
T Consensus         2 ~~~~~~GtTivgi~~~dgVviaaD~r~t   29 (217)
T d1iru2_           2 QNPMVTGTSVLGVKFEGGVVIAADMLGS   29 (217)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEE
T ss_pred             CCCcCcccEEEEEEECCEEEEEEcCCcc
Confidence            4688999999999999999999999975

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=3.3e-10  Score=69.88  Aligned_cols=28  Identities=46%  Similarity=0.815  Sum_probs=25.5

Q ss_pred             ccccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          22 TAKHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        22 ~~~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..++++|||+|||+|+||||||+|+|+|
T Consensus         3 ~~~v~~GtTivgi~~~dgVvlaaD~r~s   30 (205)
T d1ryph_           3 KGEVSLGASIMAVTFKDGVILGADSRTT   30 (205)
T ss_dssp             TTCCBCCCCEEEEEETTEEEEEECCCEE
T ss_pred             CCcccCcceEEEEEECCEEEEEECCccc
Confidence            3468999999999999999999999975

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=98.86  E-value=4.9e-10  Score=65.87  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=20.3

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||||||+|+||||||||+|+|
T Consensus         1 TTivav~~~~gVviAaDtR~S   21 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVT   21 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEECCCcc
Confidence            899999999999999999987

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.65  E-value=6.9e-09  Score=62.13  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=22.5

Q ss_pred             ccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          26 SCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        26 ~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+|||+|||+++||||||+|+|.|
T Consensus         7 ~nG~Tivai~~~dgVviaaD~r~t   30 (213)
T d1iru1_           7 FNGGTILAIAGEDFAIVASDTRLS   30 (213)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCEE
T ss_pred             CCCcEEEEEEECCEEEEEECCccc
Confidence            589999999999999999999975

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=98.61  E-value=8.7e-09  Score=64.88  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=25.2

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..+++|||+|||+|+||||||+|+|+++
T Consensus        14 ~av~~GtT~vgi~~~~GVvlaad~r~~s   41 (227)
T d1q5qa_          14 KGIARGRSVVVLTFRDGVLFVAENPSTA   41 (227)
T ss_dssp             HHHHTSCCEEEEECSSEEEEEECCSCSS
T ss_pred             HHHhcCCCEEEEEECCEEEEEEccCCCC
Confidence            4578999999999999999999999763

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.59  E-value=1e-08  Score=63.31  Aligned_cols=28  Identities=18%  Similarity=0.417  Sum_probs=24.6

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      +.+.+|||+|||+|+||||||+|+|.+.
T Consensus        26 kav~~G~tvigik~~dgVvlaaD~r~~~   53 (233)
T d1irub_          26 AAVAGGAPSVGIKAANGVVLATEKKQKS   53 (233)
T ss_dssp             HHHHTSCCEEEEECSSCEEEEEECCCCC
T ss_pred             HHHHcCCCEEEEEeCCEEEEEEeCCccc
Confidence            3457999999999999999999999763

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.4e-08  Score=63.96  Aligned_cols=26  Identities=31%  Similarity=0.472  Sum_probs=24.1

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+++|||+|||+|+||||||+|+|++
T Consensus        27 av~~G~tvvgi~~~dgVvlaad~r~~   52 (250)
T d1rypb_          27 AVKQGVTSLGIKATNGVVIATEKKSS   52 (250)
T ss_dssp             HHHTSCCEEEEEETTEEEEEEECCCS
T ss_pred             HHHcCCCEEEEEeCCEEEEEEecccC
Confidence            46899999999999999999999976

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=1.1e-08  Score=62.82  Aligned_cols=21  Identities=43%  Similarity=0.877  Sum_probs=20.1

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+|+||||||+|+|+|
T Consensus         1 TT~iai~~kdgVvlaaD~r~t   21 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRAT   21 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEEcCccc
Confidence            899999999999999999976

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.55  E-value=1.5e-08  Score=61.80  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             cCccEEEEEeCCeEEEeeeCCCC
Q psy5099          27 CGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        27 tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .|||+|||+|+||||||||+|.|
T Consensus         6 nG~Tvigi~~~dgVvlaaD~r~s   28 (204)
T d1iruj_           6 NGGAVMAMKGKNCVAIAADRRFG   28 (204)
T ss_dssp             SCCEEEEEECSSEEEEEEECCEE
T ss_pred             CCceEEEEEECCEEEEEECCCcc
Confidence            49999999999999999999976

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.52  E-value=2.1e-08  Score=61.06  Aligned_cols=21  Identities=48%  Similarity=0.786  Sum_probs=19.9

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||++||+|+||||||||+|.|
T Consensus         1 TT~igi~~~dgVvlaaD~~~t   21 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRAT   21 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEEcCccc
Confidence            899999999999999999975

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=2.7e-08  Score=62.44  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=25.1

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      +.+.+|+|+|||+|+||||||+|+|.|.
T Consensus        26 ~ai~~G~T~vgi~~~dgVvlaad~r~s~   53 (244)
T d1rypc_          26 ESISHAGTAIGIMASDGIVLAAERKVTS   53 (244)
T ss_dssp             HHHTTSCCEEEEEETTEEEEEEECSSCC
T ss_pred             HHHhcCCCEEEEEeCCEEEEEEeCCccC
Confidence            3468999999999999999999999763

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=98.50  E-value=2e-08  Score=61.24  Aligned_cols=21  Identities=43%  Similarity=0.885  Sum_probs=20.0

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||||||+|+||||||+|+|+|
T Consensus         1 TTivgi~~kdgVvlaaD~r~s   21 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRAT   21 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEECCCcc
Confidence            899999999999999999976

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=2.6e-08  Score=60.94  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=23.1

Q ss_pred             cccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          25 HSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        25 ~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      ..+|||+|||+++||||||+|+|.|
T Consensus         6 ~~nG~Tivgi~~~dgVviaaD~r~s   30 (222)
T d1ryp1_           6 GDNGGTILGIAGEDFAVLAGDTRNI   30 (222)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECCEE
T ss_pred             cCCCcEEEEEEECCEEEEEECCCcc
Confidence            4689999999999999999999975

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.49  E-value=3.6e-08  Score=60.95  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=24.0

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+.+|+|+|||+|+||||||+|+|++
T Consensus        18 av~~G~t~vgi~~~dgVvlaad~r~~   43 (221)
T d1yara1          18 AVKKGSTALGMKFANGVLLISDKKVR   43 (221)
T ss_dssp             HHTTSCCEEEEEETTEEEEEECCCCC
T ss_pred             HHhcCCcEEEEEeCCEEEEEEecccC
Confidence            46889999999999999999999976

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.46  E-value=3.4e-08  Score=60.89  Aligned_cols=22  Identities=45%  Similarity=0.821  Sum_probs=20.4

Q ss_pred             ccEEEEEeCCeEEEeeeCCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat~   50 (50)
                      ||+|||+|+||||||+|+|.|+
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~   22 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATE   22 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEES
T ss_pred             CeEEEEEECCEEEEEEcCCccc
Confidence            8999999999999999999763

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.46  E-value=3.3e-08  Score=60.14  Aligned_cols=21  Identities=76%  Similarity=1.222  Sum_probs=20.1

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||||||+|+||||||+|+|.|
T Consensus         1 TTivai~~~dgVvlaaD~r~t   21 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTT   21 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEECCccc
Confidence            899999999999999999976

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.45  E-value=3.9e-08  Score=59.75  Aligned_cols=21  Identities=19%  Similarity=0.507  Sum_probs=20.0

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+|+||||||+|+|.|
T Consensus         1 TT~igi~~kdgVvia~D~r~s   21 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVT   21 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CcEEEEEECCEEEEEECCCcc
Confidence            899999999999999999975

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.44  E-value=5.6e-08  Score=61.19  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=24.5

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+.+|+|+|||+|+||||||+|+|.+.
T Consensus        27 av~~G~t~Igik~~dgVvlaad~r~~~   53 (243)
T d1j2pa_          27 AVKRGATAIGIKCKEGVILIADKRVGS   53 (243)
T ss_dssp             HHHTSCCEEEEEETTEEEEEEECCCSC
T ss_pred             HHHcCCCEEEEEECCEEEEEEecCccc
Confidence            368999999999999999999999873

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.44  E-value=6.5e-08  Score=60.36  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+++|+|+|||+++||||||+|+|.+
T Consensus        23 av~~G~t~vgik~~dgVvlaad~~~~   48 (234)
T d1irue_          23 AIKLGSTAIGIQTSEGVCLAVEKRIT   48 (234)
T ss_dssp             HHTTSCCEEEEEETTEEEEEEECCCC
T ss_pred             HHHcCCCEEEEEeCCEEEEEEecCcc
Confidence            46799999999999999999999876

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=4.5e-08  Score=59.06  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=21.7

Q ss_pred             cCccEEEEEeCCeEEEeeeCCCC
Q psy5099          27 CGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        27 tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .|+|+|||+++||||||+|+|.|
T Consensus         7 nG~Tivgi~~~d~VvlaaD~r~~   29 (204)
T d1rypj_           7 NGGIVVAMTGKDCVAIACDLRLG   29 (204)
T ss_dssp             SCCEEEEEECSSEEEEEEECCEE
T ss_pred             CCeEEEEEEECCEEEEEEcCCcc
Confidence            59999999999999999999975

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=7.4e-08  Score=60.20  Aligned_cols=26  Identities=31%  Similarity=0.564  Sum_probs=24.1

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+.+|+|+|||+|+||||||+|+|++
T Consensus        22 a~~~G~t~Vgi~~~dgVvla~d~r~~   47 (242)
T d1rype_          22 AIKLGSTAIGIATKEGVVLGVEKRAT   47 (242)
T ss_dssp             HHTTSCCEEEEECSSCEEEEEECCCS
T ss_pred             HHHcCCCEEEEEeCCEEEEEEeCCcc
Confidence            46789999999999999999999986

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=5.7e-08  Score=60.36  Aligned_cols=21  Identities=62%  Similarity=0.979  Sum_probs=20.0

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+|+||||||+|+|.|
T Consensus         1 TTiVgik~~dGVviaaD~r~s   21 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRST   21 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEE
T ss_pred             CeEEEEEECCEEEEEECCCcc
Confidence            899999999999999999975

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.39  E-value=7.2e-08  Score=57.89  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.8

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+|+||||||+|+|.|
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s   21 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRAT   21 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEE
T ss_pred             CcEEEEEECCEEEEEECCCcc
Confidence            899999999999999999865

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=7.8e-08  Score=60.69  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=24.4

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+..|+|+|||+|+||||||+|+|.+.
T Consensus        26 av~~G~t~igik~~dgVvlaad~~~~~   52 (244)
T d1rypg_          26 AVENGTTSIGIKCNDGVVFAVEKLITS   52 (244)
T ss_dssp             HHHTSCCEEEEEETTEEEEEEEEECCC
T ss_pred             HHHcCCCEEEEEeCCEEEEEEecccCC
Confidence            467899999999999999999999863

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.37  E-value=9.2e-08  Score=60.28  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=24.2

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+.+|+|+|||+++||||||+|+|.+
T Consensus        26 av~~G~tvvgik~~dgVvlaad~~~~   51 (250)
T d1iruc_          26 AIGHAGTCLGILANDGVLLAAERRNI   51 (250)
T ss_dssp             HHTTSCCEEEEBCSSEEEEEECCCCC
T ss_pred             HHhcCCcEEEEEeCCEEEEEEeCccc
Confidence            47899999999999999999999876

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.36  E-value=8.4e-08  Score=55.95  Aligned_cols=21  Identities=14%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||||||+++||||||+|+|+|
T Consensus         2 t~ivgi~~kdgVviaaD~r~~   22 (199)
T d1iruk_           2 EYLIGIQGPDYVLVASDRVAA   22 (199)
T ss_dssp             CCEEEEECSSEEEEEEECCEE
T ss_pred             eEEEEEEECCEEEEEECCCcc
Confidence            789999999999999999975

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=1.4e-07  Score=59.20  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      .+++|+|+|||+|+||||||+|+|++
T Consensus        24 av~~G~Tvvgik~~dgVvla~d~r~~   49 (243)
T d1irud_          24 AVKKGSTAVGVRGRDIVVLGVEKKSV   49 (243)
T ss_dssp             HHHTSCCEEEECCSSEEEEEECCCCC
T ss_pred             HHhcCCCEEEEEeCCEEEEEEecccc
Confidence            36899999999999999999999965

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=2.2e-07  Score=58.20  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=24.3

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+..|+|+|||+++||||||+|+|.+.
T Consensus        24 av~~G~tvIgik~~dgVvlaad~~~~~   50 (241)
T d1rypd_          24 AVKRGTCAVGVKGKNCVVLGCERRSTL   50 (241)
T ss_dssp             HHTTSCCEEEEECSSCEEEEEECCCSS
T ss_pred             HHHcCCCEEEEEeCCEEEEEEEccccc
Confidence            357899999999999999999999863

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=3e-07  Score=57.53  Aligned_cols=25  Identities=12%  Similarity=0.093  Sum_probs=22.4

Q ss_pred             ccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          26 SCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        26 ~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      ..|+|+|||+++||||||+|+|++.
T Consensus        28 ~~g~T~igik~~dgVvlaad~r~~~   52 (243)
T d1rypa_          28 QTNINSLAVRGKDCTVVISQKKVPD   52 (243)
T ss_dssp             TTCCCEEEEECSSEEEEEEECCCCC
T ss_pred             ccCceEEEEEcCCEEEEEEeccccc
Confidence            3588999999999999999999763

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.27  E-value=1.7e-07  Score=59.38  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=23.6

Q ss_pred             cccCccEEEEEeCCeEEEeeeCCCC
Q psy5099          25 HSCGTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        25 ~~tGTTivgi~~~~GVIlaaD~rat   49 (50)
                      +++|+|+|||+++||||||+|+|++
T Consensus        30 v~~G~t~VGik~~dgVvlaad~~~~   54 (245)
T d1irug_          30 VENSSTAIGIRCKDGVVFGVEKLVL   54 (245)
T ss_dssp             HHTSCCEEEEECSSBEEEEEEEECS
T ss_pred             HHcCCcEEEEEeCCEEEEEEecccc
Confidence            6899999999999999999999875

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.26  E-value=2e-07  Score=58.46  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=24.4

Q ss_pred             ccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          24 KHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        24 ~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      .+..|+|+|||+++||||||+|+|.++
T Consensus        25 av~~G~t~vgik~~dgVvlaad~~~~~   51 (238)
T d1iruf_          25 AVKQGSATVGLKSKTHAVLVALKRAQS   51 (238)
T ss_dssp             HHHHSCCEEEEECSSEEEEEEECCCSS
T ss_pred             HHhcCCCEEEEEeCCEEEEEEeccccc
Confidence            367899999999999999999999874

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.8e-07  Score=56.66  Aligned_cols=21  Identities=10%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             ccEEEEEeCCeEEEeeeCCCC
Q psy5099          29 TTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        29 TTivgi~~~~GVIlaaD~rat   49 (50)
                      ||+|||+|+||||||+|+|+|
T Consensus         2 ~tiigi~~~dgVvlaaD~r~s   22 (198)
T d1rypk_           2 DIILGIRVQDSVILASSKAVT   22 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEE
T ss_pred             eEEEEEEECCEEEEEEcCCcc
Confidence            799999999999999999975

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=7.3e-07  Score=55.67  Aligned_cols=28  Identities=14%  Similarity=0.163  Sum_probs=24.9

Q ss_pred             cccccCccEEEEEeCCeEEEeeeCCCCC
Q psy5099          23 AKHSCGTTIIAVEFDGGVVIGADSRSST   50 (50)
Q Consensus        23 ~~~~tGTTivgi~~~~GVIlaaD~rat~   50 (50)
                      +.+..|+|+|||+++||||||+|+|.++
T Consensus        26 kav~~g~t~igi~~~dgvvlaad~~~~~   53 (233)
T d1rypf_          26 EAIKQGSVTVGLRSNTHAVLVALKRNAD   53 (233)
T ss_dssp             HHHHTSCCEEEEECSSEEEEEEECCCSS
T ss_pred             HHHHcCCCEEEEEECCeEEEEEeccccc
Confidence            3468899999999999999999999863

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.07  E-value=1.3e-06  Score=54.78  Aligned_cols=25  Identities=24%  Similarity=0.174  Sum_probs=22.0

Q ss_pred             ccc-CccEEEEEeCCeEEEeeeCCCC
Q psy5099          25 HSC-GTTIIAVEFDGGVVIGADSRSS   49 (50)
Q Consensus        25 ~~t-GTTivgi~~~~GVIlaaD~rat   49 (50)
                      +.. |||+|||+++||||||+|+|++
T Consensus        31 v~~gg~t~igIk~~dgVVlaad~r~~   56 (244)
T d1irua_          31 INQGGLTSVAVRGKDCAVIVTQKKVP   56 (244)
T ss_dssp             HHTTCCEEEEEECSSEEEEEEECCCC
T ss_pred             HHhCCccEEEEEcCCEEEEEEecccc
Confidence            344 6899999999999999999986