Psyllid ID: psy5114

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
MSLTPTWGKIYPTDKDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVFVSIEPGPVIERVRSQPGSPLNKSPLGSPHEKSPLVSRDASPSRTALNGIKTNGTASKPASKFYTTLDDQVVERGKKYTELASTGVNSSPGHNSSGVLKPKTVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAWSLIRNNVPLVTFLVLWPILTQLMSLWIQTRRRQSR
cccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHcccccccHHHHcccccccHHcccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
msltptwgkiyptdkdqttpakmtteEKFHAAVNVIRnlpkngayqpsnDLMLRFYSYFKQVKIqntrlfiedqttpakmtteEKFHAAVNVIRnlpkngayqpsnDLMLRFYSYFkqategpckqpkpsfwDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLdsfyenvpaeeldmILGKEKVQTLVKGVCMVFvsiepgpviervrsqpgsplnksplgspheksplvsrdaspsrtalngiktngtaskpaskfyttlDDQVVERGKKYTELastgvnsspghnssgvlkpktVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAWslirnnvplVTFLVLWPILTQLMSLWIQTRRRQSR
msltptwgkiyptdkdqttpaKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATegpckqpkpsfWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVFVSIEPGPVIERVRSQPgsplnksplgspheksplvsrdaspsrtalngiktngtaskpaskfytTLDDQVVERGKKYTELastgvnsspghnssgvlKPKTVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSensawslirnnVPLVTFLVLWPILTQLMSLWIQTRRRQSR
MSLTPTWGKIYPTDKDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVFVSIEPGPVIERVRSQPGSPLNKSPLGSPHEKSPLVSRDASPSRTALNGIKTNGTASKPASKFYTTLDDQVVERGKKYTELASTGVNSSPGHNSSGVLKPKTVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAWSLIRNNVPLVTFLVLWPILTQLMSLWIQTRRRQSR
****************************FHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVFVSIEPGPVI*******************************************************************************************TVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAWSLIRNNVPLVTFLVLWPILTQLMSLWIQ*******
**********YPT**********TTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQV*********************EKFHAAVNVIRN************LMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAY*D*****************************************************************************************************************************************************DNIRNIQTD*******************************RNNVPLVTFLVLWPILTQLMSLWIQTRR****
MSLTPTWGKIYPTDKDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVFVSIEPGPVIERVRS***************************SRTALNGIKTNGTASKPASKFYTTLDDQVVERGKKYTELASTGVNSSPGHNSSGVLKPKTVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAWSLIRNNVPLVTFLVLWPILTQLMSLWIQTRRRQSR
*****TW*KIYPTDKDQT*PAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVF**************************************************************************************************PKTVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLLA***SENSAWSLIRNNVPLVTFLVLWPILTQLMSLWIQTRR****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiii
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MSLTPTWGKIYPTDKDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVFVSIEPGPVIERVRSQPGSPLNKSPLGSPHEKSPLVSRDASPSRTALNGIKTNGTASKPASKFYTTLDDQVVERGKKYTELASTGVNSSPGHNSSGVLKPKTVLxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKLLAVQRSENSAWSLIRNNVPLVTFLVLWPILTQLMSLWIQTRRRQSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query394 2.2.26 [Sep-21-2011]
A0FKI7 506 Acyl-CoA-binding domain-c yes N/A 0.172 0.134 0.598 3e-34
Q502L1 501 Acyl-CoA-binding domain-c yes N/A 0.271 0.213 0.598 3e-34
Q5XG73 508 Acyl-CoA-binding domain-c yes N/A 0.304 0.236 0.549 6e-34
P07106 533 Acyl-CoA-binding domain-c yes N/A 0.225 0.166 0.607 7e-34
Q5R7V3 525 Acyl-CoA-binding domain-c yes N/A 0.220 0.165 0.588 8e-34
Q5T8D3 534 Acyl-CoA-binding domain-c yes N/A 0.220 0.162 0.588 1e-33
Q5ZHQ6 492 Acyl-CoA-binding domain-c yes N/A 0.266 0.213 0.580 1e-33
Q641E3 467 Acyl-CoA-binding domain-c N/A N/A 0.266 0.224 0.580 4e-33
Q640U0 458 Acyl-CoA-binding domain-c yes N/A 0.266 0.229 0.580 5e-33
Q2KHT9303 Acyl-CoA-binding domain-c no N/A 0.713 0.927 0.286 8e-31
>sp|A0FKI7|ACBD5_RAT Acyl-CoA-binding domain-containing protein 5 OS=Rattus norvegicus GN=Acbd5 PE=1 SV=1 Back     alignment and function desciption
 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 83/107 (77%)

Query: 83  EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
           E +F AAV VI++LPKNG++QP+N++MLRFYS++KQATEGPCK  +P FWD + + KWDA
Sbjct: 45  ETRFEAAVKVIQSLPKNGSFQPTNEMMLRFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104

Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENV 189
           W  LG+M KEEAM AYVEE+KKI+ETM   + VE  +  +  FYE V
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVEELLHVIGPFYEIV 151
Binds medium- and long-chain acyl-CoA esters.
Rattus norvegicus (taxid: 10116)
>sp|Q502L1|ACB5A_DANRE Acyl-CoA-binding domain-containing protein 5A OS=Danio rerio GN=acbd5a PE=2 SV=1 Back     alignment and function description
>sp|Q5XG73|ACBD5_MOUSE Acyl-CoA-binding domain-containing protein 5 OS=Mus musculus GN=Acbd5 PE=1 SV=1 Back     alignment and function description
>sp|P07106|ACBD5_BOVIN Acyl-CoA-binding domain-containing protein 5 OS=Bos taurus GN=ACBD5 PE=2 SV=2 Back     alignment and function description
>sp|Q5R7V3|ACBD5_PONAB Acyl-CoA-binding domain-containing protein 5 OS=Pongo abelii GN=ACBD5 PE=2 SV=1 Back     alignment and function description
>sp|Q5T8D3|ACBD5_HUMAN Acyl-CoA-binding domain-containing protein 5 OS=Homo sapiens GN=ACBD5 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZHQ6|ACBD5_CHICK Acyl-CoA-binding domain-containing protein 5 OS=Gallus gallus GN=ACBD5 PE=2 SV=1 Back     alignment and function description
>sp|Q641E3|ACBD5_XENLA Acyl-CoA-binding domain-containing protein 5 OS=Xenopus laevis GN=acbd5 PE=2 SV=1 Back     alignment and function description
>sp|Q640U0|ACBD5_XENTR Acyl-CoA-binding domain-containing protein 5 OS=Xenopus tropicalis GN=acbd5 PE=2 SV=1 Back     alignment and function description
>sp|Q2KHT9|ACBD4_BOVIN Acyl-CoA-binding domain-containing protein 4 OS=Bos taurus GN=ACBD4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
307174135353 Acyl-CoA-binding domain-containing prote 0.741 0.827 0.410 3e-64
307195682353 Acyl-CoA-binding domain-containing prote 0.743 0.830 0.403 2e-63
380021196350 PREDICTED: acyl-CoA-binding domain-conta 0.743 0.837 0.409 6e-61
328782802350 PREDICTED: acyl-CoA-binding domain-conta 0.743 0.837 0.393 2e-59
383865761354 PREDICTED: acyl-CoA-binding domain-conta 0.743 0.827 0.378 2e-59
340724700350 PREDICTED: acyl-CoA-binding domain-conta 0.743 0.837 0.396 3e-59
350398453350 PREDICTED: acyl-CoA-binding domain-conta 0.736 0.828 0.393 4e-59
332031350325 Acyl-CoA-binding domain-containing prote 0.672 0.815 0.373 5e-50
328706682299 PREDICTED: acyl-CoA-binding domain-conta 0.720 0.949 0.390 1e-48
242006027442 conserved hypothetical protein [Pediculu 0.324 0.289 0.569 3e-44
>gi|307174135|gb|EFN64793.1| Acyl-CoA-binding domain-containing protein 5 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/375 (41%), Positives = 209/375 (55%), Gaps = 83/375 (22%)

Query: 80  MTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAK 139
           M+TEEKF+AAVNVIRNLPKNGAYQPS+++MLRFYSY+KQATEGPC+Q KP+FW+V++KAK
Sbjct: 1   MSTEEKFNAAVNVIRNLPKNGAYQPSHEIMLRFYSYYKQATEGPCQQSKPAFWEVIKKAK 60

Query: 140 WDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENVPAEELDMILG 199
           WDAW +LGNM + EAM  YVEEL KIVETM+Y DNV TF+GSLDSFYE+VPAE+L++++ 
Sbjct: 61  WDAWSRLGNMSRTEAMNNYVEELTKIVETMSYTDNVATFLGSLDSFYESVPAEDLELLV- 119

Query: 200 KEKVQTLVKGVCMVFVSIEPGPVIERVRSQPGSPLNKSPLG----SPH------------ 243
                               GPV+ER+RSQPGSPL+ SPL     SPH            
Sbjct: 120 --------------------GPVLERIRSQPGSPLSGSPLASRETSPHRVCSTSRHITSS 159

Query: 244 -EKSPLVSRDASPSRTALNG----------------IKTNGTASKPASKFYTTLDDQVVE 286
            E SP  SR ASP     +G                 K    ++ P  K  TT+++ +  
Sbjct: 160 LETSPTSSRTASPLPQDTDGEEEEFIDTVESAPERMQKDASKSTVPPQKVQTTMNNGIDH 219

Query: 287 RG-----KKYTELASTGVNSSPGHNSS--------GVLKPK-------TVLLDSLSDNIR 326
                  K+ TEL + G ++  GH  +        G  + K          L+ ++  ++
Sbjct: 220 SNTENVIKENTELVN-GYSNVNGHMETIQESQRERGRQRTKKDDNKINAEFLNQVATTMQ 278

Query: 327 NIQTDLASISERIKRLEVLSKLLAVQRSENSA-------WSLIRNNVPLVTFLVLWPILT 379
           ++Q DL  I+ R++ LE  +      ++EN+        W L   +  L   L+LWP   
Sbjct: 279 HLQRDLDRITARVRSLEGQALQAMAPQTENTVRRIYARWWPLQECSPRLFALLILWPFAA 338

Query: 380 QLMSLWIQTRRRQSR 394
            L+  + Q R RQ R
Sbjct: 339 HLLINFTQ-RYRQRR 352

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307195682|gb|EFN77524.1| Acyl-CoA-binding domain-containing protein 4 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380021196|ref|XP_003694457.1| PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Apis florea] Back     alignment and taxonomy information
>gi|328782802|ref|XP_001122639.2| PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Apis mellifera] Back     alignment and taxonomy information
>gi|383865761|ref|XP_003708341.1| PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340724700|ref|XP_003400719.1| PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350398453|ref|XP_003485199.1| PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332031350|gb|EGI70863.1| Acyl-CoA-binding domain-containing protein 5 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328706682|ref|XP_003243171.1| PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242006027|ref|XP_002423858.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507092|gb|EEB11120.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
UNIPROTKB|F1N5Z3 522 ACBD5 "Acyl-CoA-binding domain 0.271 0.204 0.607 1.8e-40
UNIPROTKB|F1MEK6 533 ACBD5 "Acyl-CoA-binding domain 0.271 0.200 0.607 3.1e-40
UNIPROTKB|P07106 533 ACBD5 "Acyl-CoA-binding domain 0.271 0.200 0.607 3.1e-40
RGD|1309411 506 Acbd5 "acyl-CoA binding domain 0.573 0.446 0.377 4.6e-40
UNIPROTKB|F1LRH5 513 Acbd5 "Acyl-CoA-binding domain 0.573 0.440 0.377 4.6e-40
UNIPROTKB|Q5T8D3 534 ACBD5 "Acyl-CoA-binding domain 0.271 0.200 0.588 7.4e-40
MGI|MGI:1921409 508 Acbd5 "acyl-Coenzyme A binding 0.484 0.375 0.415 9.4e-40
UNIPROTKB|F1PSM6 482 ACBD5 "Uncharacterized protein 0.271 0.221 0.588 1.5e-39
FB|FBgn0031478324 CG8814 [Drosophila melanogaste 0.748 0.910 0.350 1.8e-39
UNIPROTKB|F1RVK3 524 ACBD5 "Uncharacterized protein 0.271 0.204 0.588 3.9e-39
UNIPROTKB|F1N5Z3 ACBD5 "Acyl-CoA-binding domain-containing protein 5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 360 (131.8 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
 Identities = 65/107 (60%), Positives = 83/107 (77%)

Query:    83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
             E +F AAV VI++LPKNG++QP+N++ML+FYS++KQATEGPCK  KP FWD V + KWDA
Sbjct:    43 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSKPGFWDPVGRYKWDA 102

Query:   143 WKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYENV 189
             W  LG+M KEEAM AYVEE+KKI+ETM   + VE  +  +  FYE V
Sbjct:   103 WSSLGDMTKEEAMIAYVEEMKKILETMPMTEKVEELLHVIGPFYEIV 149
GO:0000062 "fatty-acyl-CoA binding" evidence=IEA
UNIPROTKB|F1MEK6 ACBD5 "Acyl-CoA-binding domain-containing protein 5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P07106 ACBD5 "Acyl-CoA-binding domain-containing protein 5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1309411 Acbd5 "acyl-CoA binding domain containing 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRH5 Acbd5 "Acyl-CoA-binding domain-containing protein 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T8D3 ACBD5 "Acyl-CoA-binding domain-containing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1921409 Acbd5 "acyl-Coenzyme A binding domain containing 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSM6 ACBD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0031478 CG8814 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVK3 ACBD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
pfam0088787 pfam00887, ACBP, Acyl CoA binding protein 3e-39
cd0043585 cd00435, ACBP, Acyl CoA binding protein (ACBP) bin 6e-33
PTZ0045890 PTZ00458, PTZ00458, acyl CoA binding protein; Prov 2e-13
COG428187 COG4281, ACB, Acyl-CoA-binding protein [Lipid meta 3e-13
cd0043585 cd00435, ACBP, Acyl CoA binding protein (ACBP) bin 2e-05
>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein Back     alignment and domain information 
 Score =  135 bits (341), Expect = 3e-39
 Identities = 46/88 (52%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 83  EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
           EE+F AAV  ++ LPK+G  +PSN+  L+ Y+ +KQATEG    P+P  +DV+ KAKWDA
Sbjct: 2   EEEFEAAVKFVKKLPKDG--RPSNEEKLKLYALYKQATEGDVNTPRPGMFDVIGKAKWDA 59

Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMA 170
           WKKL  M KEEAM+ YVE ++++VE   
Sbjct: 60  WKKLKGMSKEEAMKKYVELVEELVEKYG 87

Length = 87
>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional Back     alignment and domain information
>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 394
PTZ0045890 acyl CoA binding protein; Provisional 99.95
cd0043585 ACBP Acyl CoA binding protein (ACBP) binds thiol e 99.95
KOG0817|consensus142 99.94
PF0088787 ACBP: Acyl CoA binding protein; InterPro: IPR00058 99.94
COG428187 ACB Acyl-CoA-binding protein [Lipid metabolism] 99.89
PTZ0045890 acyl CoA binding protein; Provisional 99.71
cd0043585 ACBP Acyl CoA binding protein (ACBP) binds thiol e 99.68
KOG0817|consensus142 99.68
PF0088787 ACBP: Acyl CoA binding protein; InterPro: IPR00058 99.62
COG428187 ACB Acyl-CoA-binding protein [Lipid metabolism] 99.59
KOG3878|consensus 469 98.81
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 95.42
PF00373126 FERM_M: FERM central domain; InterPro: IPR019748 T 93.49
KOG3878|consensus469 88.06
TIGR0297675 phageshock_pspB phage shock protein B. This model 82.99
PF14316146 DUF4381: Domain of unknown function (DUF4381) 82.9
PF0666775 PspB: Phage shock protein B; InterPro: IPR009554 T 80.48
PF1039347 Matrilin_ccoil: Trimeric coiled-coil oligomerisati 80.1
>PTZ00458 acyl CoA binding protein; Provisional Back     alignment and domain information 
Probab=99.95  E-value=4.7e-28  Score=200.61  Aligned_cols=87  Identities=31%  Similarity=0.624  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCCCcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy5114          83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEEL  162 (394)
Q Consensus        83 eekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prPg~~D~~~raKwdAW~~lggMS~eEAm~~YVe~v  162 (394)
                      .+.|++|++.|++++.++  .+++|++|+|||||||||+|+|+.++||+||+++|+||+||++++|||++|||++||+++
T Consensus         2 ~~~F~~A~~~v~~~~~~~--~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~   79 (90)
T PTZ00458          2 ADLFEECVSFINSLPKTV--NLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIV   79 (90)
T ss_pred             hHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            367999999999988764  489999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q psy5114         163 KKIVETMAY  171 (394)
Q Consensus       163 ~~ii~~~~~  171 (394)
                      ++++++|.-
T Consensus        80 ~~l~~~w~~   88 (90)
T PTZ00458         80 TELFPNWEK   88 (90)
T ss_pred             HHHhhcccc
Confidence            999998854

>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>KOG0817|consensus Back     alignment and domain information
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] Back     alignment and domain information
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism] Back     alignment and domain information
>PTZ00458 acyl CoA binding protein; Provisional Back     alignment and domain information
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>KOG0817|consensus Back     alignment and domain information
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] Back     alignment and domain information
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism] Back     alignment and domain information
>KOG3878|consensus Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4 Back     alignment and domain information
>KOG3878|consensus Back     alignment and domain information
>TIGR02976 phageshock_pspB phage shock protein B Back     alignment and domain information
>PF14316 DUF4381: Domain of unknown function (DUF4381) Back     alignment and domain information
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences Back     alignment and domain information
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
3flv_A119 The Crystal Structure Of Human Acyl-Coenzymea Bindi 7e-33
2wh5_A106 Crystal Structure Of Human Acyl-Coa Binding Domain 1e-27
3fp5_A106 Crystal Structure Of Acbp From Moniliophthora Perni 3e-15
2cqu_A116 Solution Structure Of Rsgi Ruh-045, A Human Acyl-Co 3e-15
2lbb_A96 Solution Structure Of Acyl Coa Binding Protein From 3e-11
2fdq_A86 Crystal Structure Of Acbp From Armadillo Harderian 6e-11
2cb8_A87 High Resolution Crystal Structure Of Liganded Human 9e-11
2fj9_A86 High Resolution Crystal Structure Of The Unliganded 9e-11
1hb6_A86 Structure Of Bovine Acyl-Coa Binding Protein In Ort 5e-10
2cop_A109 Solution Structure Of Rsgi Ruh-040, An Acbp Domain 6e-09
1hbk_A89 Acyl-Coa Binding Protein From Plasmodium Falciparum 5e-07
1st7_A86 Solution Structure Of Acyl Coenzyme A Binding Prote 8e-06
3epy_A89 Crystal Structure Of Human Acyl-Coa Binding Domain 4e-05
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding Domain Containing 5 Length = 119 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (346), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 77/94 (81%)
Query: 83  EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
           E +F AAV VI++LPKNG++QP+N++ML+FYS++KQATEGPCK  +P FWD + + KWDA
Sbjct: 25  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 84
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
           W  LG+M KEEAM AYVEE+KKI+ETM   + VE
Sbjct: 85  WSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVE 118
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4 Complexed With Stearoyl-Coa Length = 106 Back     alignment and structure
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa Length = 106 Back     alignment and structure
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa Binding Protein Length = 116 Back     alignment and structure
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From Babesia Bovis T2bo Length = 96 Back     alignment and structure
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland Length = 86 Back     alignment and structure
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp Length = 87 Back     alignment and structure
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human Acbp Length = 86 Back     alignment and structure
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Orthorhombic Crystal Form Length = 86 Back     alignment and structure
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From Human Cdna Length = 109 Back     alignment and structure
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum Length = 89 Back     alignment and structure
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From Yeast Length = 86 Back     alignment and structure
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7 Complexed With Palmitoyl-Coa Length = 89 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 4e-38
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 3e-37
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 1e-34
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 2e-34
2lbb_A96 Acyl COA binding protein; protein binding, structu 1e-33
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 9e-33
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 9e-33
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 2e-07
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 2e-32
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 4e-32
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 8e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Length = 119 Back     alignment and structure
 Score =  132 bits (333), Expect = 4e-38
 Identities = 59/94 (62%), Positives = 77/94 (81%)

Query: 83  EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
           E +F AAV VI++LPKNG++QP+N++ML+FYS++KQATEGPCK  +P FWD + + KWDA
Sbjct: 25  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 84

Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
           W  LG+M KEEAM AYVEE+KKI+ETM   + VE
Sbjct: 85  WSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVE 118
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} Length = 106 Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Length = 106 Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Length = 96 Back     alignment and structure
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Length = 89 Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Length = 87 Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Length = 87 Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Length = 86 Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} Length = 89 Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 99.97
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 99.97
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 99.96
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 99.96
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 99.96
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 99.96
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 99.96
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 99.96
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 99.95
2lbb_A96 Acyl COA binding protein; protein binding, structu 99.95
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 99.8
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 99.79
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 99.77
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 99.77
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 99.75
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 99.75
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 99.75
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 99.74
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 99.72
2lbb_A96 Acyl COA binding protein; protein binding, structu 99.71
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 97.82
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 93.38
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 93.35
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 92.6
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 92.3
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 90.68
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 89.4
3au4_A555 Myosin-X; protein-protein complex, motor protein c 82.48
2akf_A32 Coronin-1A; coiled coil, protein binding; 1.20A {S 80.35
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Back     alignment and structure
Probab=99.97  E-value=5.2e-32  Score=233.03  Aligned_cols=99  Identities=60%  Similarity=1.109  Sum_probs=89.8

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCCCcccHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy5114          79 KMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAY  158 (394)
Q Consensus        79 mmdleekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prPg~~D~~~raKwdAW~~lggMS~eEAm~~Y  158 (394)
                      |-+++++|+.|++.|+.++++|+.+|++|++|+|||||||||+|||+.++||+||++||+||+||++++|||++|||++|
T Consensus        21 ~~dLe~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~Y  100 (119)
T 3flv_A           21 QSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAY  100 (119)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            44688999999999999999888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcchHH
Q psy5114         159 VEELKKIVETMAYNDNVET  177 (394)
Q Consensus       159 Ve~v~~ii~~~~~t~~~~~  177 (394)
                      |+++++|+++|++++++++
T Consensus       101 I~~v~~l~~~~~~~~~~~~  119 (119)
T 3flv_A          101 VEEMKKIIETMPMTEKVEE  119 (119)
T ss_dssp             HHHHHHHHHHSCC------
T ss_pred             HHHHHHHHhhCCCCccccC
Confidence            9999999999999998763
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 Back     alignment and structure
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Back     alignment and structure
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Back     alignment and structure
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Back     alignment and structure
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 394
d1hbka_89 a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium 4e-33
d1hb6a_86 a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos t 4e-31
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Length = 89 Back     information, alignment and structure

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

 Score =  116 bits (293), Expect = 4e-33
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 83  EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
            + F   V+ I  LP+       N+L L  Y Y+KQ+T G C   +PS    + + K++A
Sbjct: 3   AQVFEECVSFINGLPR--TINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60

Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYND 173
           WK + N+ +E+A + YV+ + +I     + D
Sbjct: 61  WKSVENLNREDAQKRYVDIVSEIFPY--WQD 89
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 86 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
d1hb6a_86 Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 99.95
d1hbka_89 Acyl-CoA binding protein {Plasmodium falciparum [T 99.95
d1hb6a_86 Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 99.69
d1hbka_89 Acyl-CoA binding protein {Plasmodium falciparum [T 99.68
d1h4ra1111 Merlin {Human (Homo sapiens) [TaxId: 9606]} 96.98
d1gg3a1106 Erythroid membrane protein 4.1R {Human (Homo sapie 96.9
d1ef1a1111 Moesin {Human (Homo sapiens) [TaxId: 9606]} 96.77
d1mixa1114 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 96.62
d2al6a1123 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 91.09
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.5e-28  Score=197.47  Aligned_cols=85  Identities=34%  Similarity=0.671  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCCCcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy5114          83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEEL  162 (394)
Q Consensus        83 eekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prPg~~D~~~raKwdAW~~lggMS~eEAm~~YVe~v  162 (394)
                      ++.|+.|++.|+.++.    .|+++++|+|||||||||+|||+.++|+++|+++++||+||++++|||++|||+.||+++
T Consensus         2 ~~~F~~A~~~v~~~~~----~~~~~~~L~LYalyKQat~Gd~~~~~P~~~~~~~~aKw~AW~~~~gms~~eA~~~YI~~v   77 (86)
T d1hb6a_           2 QAEFDKAAEEVKHLKT----KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKV   77 (86)
T ss_dssp             HHHHHHHHHHGGGCSS----CCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC----CcCHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            5789999999999986    489999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q psy5114         163 KKIVETMAY  171 (394)
Q Consensus       163 ~~ii~~~~~  171 (394)
                      ++++++|++
T Consensus        78 ~~l~~k~g~   86 (86)
T d1hb6a_          78 EELKKKYGI   86 (86)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCc
Confidence            999999874
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure