Psyllid ID: psy5134

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
Protein Sequence
MPLDRMTQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQLTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYEPPKHYHQFA
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEcccccHHHHHHHHHHcccccccccEEEEEccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEcccEEEEEEEEEcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHcccEEEccccccccccccccEEEEcccccHHHHHHHHHHcccccccccEEEEEccHHHHHcccHHHHHHHHHHHHHHHHHHcEEEEccccccccccccccccEEEcccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEcccccEEEccccEEEEcccccHHHHHHHHHHcccHHccccEEEEEccHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEccccccEEEccccEEEEcccccHHHHHHHHHHcccHHHcccEEEEEccHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHcccEEEEccHHHHccccHHHHcccccccccccccHHHHccccHHHHHcccccccccEEEEEEcccccEEEEcccccccccccccccccccccccccccccHHHcccHHHHcHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHccccccccccc
Coil and Loop (DISEMBL)
mpldrmtqneecKHTITHAktlvymprcpiqlinnilysnwtrenlSNLILLSNsistvvdsntDALCILALANVVKDKLKQKSIMCMTIRTTQLTPVMLAMVMMVHLHVTTSIFNSMMHVYNElniptswhiLKCSFSIFRRIESVKEELGSSDYYLQLINLISKSlnlssansttQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAktlvymprcpiqlinnilysnwtrenlSNLILLSNsistvvdsntdAFLKSNLQFLFHIKEFleevpvvnnfkfndifndtslhcflptklnSIEQDIWDlrflepeytecnfektksgAFVSSLIKVGaglgetnvcgYKQLIKIkwkrpepvafndprksgdqilelgpleldkptleyakceslKSADEHVKKIFSCAHRGRKQAVELVKKKHvdsvkrhdlddtsrEVLITKYTVSIRSLqehhkakpldKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKivfrpgptilnkvhrkeSLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEkkygkeptvtkEEIESIWKKYEELAEKELeqyeppkhyhqfa
Flexible Loop (DISEMBL)
mpldrmtqneeckhtithaktlvymPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDALCILALANVVkdklkqksimcMTIRTTQLTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVafndprksgdqilELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVelvkkkhvdsvkrhdlddtsrevlITKYTVsirslqehhkakpldkraKVWLKELIDkrnkhlrllrteNYKVFEWLLDELKIVfrpgptilnkvhrkeslrflvdkhigdvkterltqlrnkfnqekinfYKKKAEFLEWTMeqekkygkeptvtkeeIESIWKKYEELAEKeleqyeppkhyhqfa
Low Complexity Region (SEG)
MPLDRMTQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTREnlsnlillsnsisTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQLTPvmlamvmmvhlhvTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYlqlinliskslnlssansTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPifnelelelieifkleliiQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTREnlsnlillsnsisTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWkkyeelaekeleqyePPKHYHQFA
Disordered region (IsUnstruct)
***********CKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQLTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAF*********ILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHV*******L*DTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTME*****************SIWKK**********************
Disordered Region (DISOPRED)
*PLDRMTQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQLTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYLQLINLIS*************GINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKI******************************************SADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKT****************************M******G***TV*********************************
Disordered Region (DISEMBL)
*********EECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQLTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKK**********EIESIWKKYEELAEKELEQYEPPKHYHQFA
Disordered Region (DISPRO)
MPLDRMTQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQLTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQY**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLDRMTQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQLTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYEPPKHYHQFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	648	2.2.26 [Sep-21-2011]
Q8WTC1	280	28S ribosomal protein S15	yes	N/A	0.381	0.882	0.376	2e-33
Q9UH36	339	SRR1-like protein OS=Homo	yes	N/A	0.274	0.525	0.360	1e-26
Q9VEB5	276	SRR1-like protein OS=Dros	no	N/A	0.300	0.706	0.316	3e-22
Q8K2M3	249	SRR1-like protein OS=Mus	yes	N/A	0.268	0.698	0.247	3e-15
Q6DGL8	263	28S ribosomal protein S15	no	N/A	0.197	0.486	0.335	2e-09
Q8GWZ6	275	Protein SENSITIVITY TO RE	yes	N/A	0.163	0.385	0.290	2e-09
Q9NAP9	330	28S ribosomal protein S15	yes	N/A	0.25	0.490	0.307	3e-08
Q5XI37	257	28S ribosomal protein S15	no	N/A	0.199	0.501	0.330	4e-08
Q9DC71	258	28S ribosomal protein S15	no	N/A	0.199	0.5	0.323	1e-07
Q06688	274	SRR1-like protein BER1 OS	yes	N/A	0.179	0.423	0.315	2e-07

>sp|Q8WTC1|RT15_DROME 28S ribosomal protein S15, mitochondrial OS=Drosophila melanogaster GN=bonsai PE=2 SV=2

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/250 (37%), Positives = 141/250 (56%), Gaps = 3/250 (1%)

Query: 390 GYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIF 449
            +K  +KIKW RPE +A   P KSGD + +L PL+ D+   EY  C+ L  ADE VK +F
Sbjct: 20  AFKSDLKIKWMRPEKIACYKPEKSGD-LAKLPPLKADELLPEYRDCKELDKADESVKSLF 78

Query: 450 SCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAK 509
             ++       +  + + V  V+RH  D  S E  + K T  IR  QEH    P DK  K
Sbjct: 79  KLSNNASYLTTKFYRDEMVKEVQRHAQDFGSMEAKLAKMTAVIRRYQEHMDKHPRDKMIK 138

Query: 510 VWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHI 569
           V LKELIDKR K L+ LR  +Y  FEW+L++L +V++P PT  + + RKESL+ L D + 
Sbjct: 139 VRLKELIDKRKKFLKYLRRWDYPRFEWILEKLDLVYKPPPTHFHWITRKESLQKLTDIYC 198

Query: 570 GDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEE 629
            ++K ERL     +   ++I F ++  + +++  +++       TVT+E+I    ++ E 
Sbjct: 199 ENLKEERLEAYHKQLQAQQIPFLEEAIKKMQFVRQEQISCDVPVTVTEEKIADSKRQLEM 258

Query: 630 LAEKELEQYE 639
           L  KEL+Q E
Sbjct: 259 L--KELQQAE 266

Essential for gut mitochondrial activity. Might be involved in tissue specific growth factor production.
Drosophila melanogaster (taxid: 7227)

>sp|Q9UH36|SRR1L_HUMAN SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 107/186 (57%), Gaps = 8/186 (4%)

Query: 182 QIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEI-----LIYDPIFNELELELIEIFKLE 236
           + +CYGIGNF   I A+ Q  L  LL +   C+I      +YDP+F++LE+E++    + 
Sbjct: 140 KCVCYGIGNFATCIVARNQ--LTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVT 197

Query: 237 LIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNT 296
           ++ +NEE K +I    T+ YM  C   L NN+L+SNW+ + LS ++++ NS   + +   
Sbjct: 198 VLSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEERLL 257

Query: 297 DAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLE 356
              L+ N  ++  I + LEE+      ++ DIFNDTS+H F   KL  +  DIW+ R  E
Sbjct: 258 ARILQKNYPYIAKILKGLEELEFPQTSQYMDIFNDTSVHWFPVQKLEQLSIDIWEFR-EE 316

Query: 357 PEYTEC 362
           P+Y +C
Sbjct: 317 PDYQDC 322

May be involved in a circadian clock input pathway.

Homo sapiens (taxid: 9606)

>sp|Q9VEB5|SRR1L_DROME SRR1-like protein OS=Drosophila melanogaster GN=CG7988 PE=1 SV=1

 Score =  107 bits (268), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 17/212 (8%)

Query: 143 RIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFV 202
           R+E++  E+  SDY+L  +  + + L         + + +I+C G+G F+ +  A +Q  
Sbjct: 49  RLENLCTEMCQSDYFLVAMEALQQQLE-----GIRKPLERIVCLGLGPFSRTYHALHQAA 103

Query: 203 LLLLLKIEYDC-EILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCP 261
            ++ L   +   E L +DP+F + E ELI +F   ++ ++   KH  T   TL Y+P CP
Sbjct: 104 FVIGLHRHHKIREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEAT-VPTLYYLPHCP 162

Query: 262 IQLINNILYSNWTRENLSNLILLSNSIS--TVVDSNTDAFLKSNLQFLFHIKEFLEEVPV 319
             L++NIL+SNW RE L N+ L+SNS    T+   N D  +         I E   E P+
Sbjct: 163 YALMHNILWSNWKRETLPNVFLISNSFEMLTMTPRNQDDHITR-------IVEHCTETPL 215

Query: 320 VNNFKFNDIFNDTSLHCFLPTKL-NSIEQDIW 350
            ++++ +++FND SLH F    L  S ++  W
Sbjct: 216 EDDYEHHNVFNDLSLHTFPQESLPGSNDEAFW 247

Possible regulator involved in a circadian clock input pathway.

Drosophila melanogaster (taxid: 7227)

>sp|Q8K2M3|SRR1L_MOUSE SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 99/202 (49%), Gaps = 28/202 (13%)

Query: 139 SIFRRIESVKEELGSSDYYLQLINLISKSL---------------------NLSSAN--- 174
           ++ RR+   +E+L  SD+    +  I++ L                     +L SA+   
Sbjct: 41  AVLRRLREAEEDLRISDFCSSALETITECLRKQLEQLQPLTEALGRLHLGSSLPSASQEP 100

Query: 175 -STTQGINQIICYGIGNFTDSIAAKYQ--FVLLLLLKIEYD-CEILIYDPIFNELELELI 230
            +++    + +CYG+G F     A+ Q  F+LL L K +       +YDP+F++ E+ ++
Sbjct: 101 LASSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSHCWVYDPLFSQTEVSVL 160

Query: 231 EIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSIST 290
               + ++ +NEE K ++    T+ YMP C   L NN+L+SNW+ + LS ++++ NS   
Sbjct: 161 TSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALSRVLIIGNSFRG 220

Query: 291 VVDSNTDAFLKSNLQFLFHIKE 312
           + +      L+ N  ++  + +
Sbjct: 221 LEERLLARILQENYPYIAKVSD 242

May be involved in a circadian clock input pathway.

Mus musculus (taxid: 10090)

>sp|Q6DGL8|RT15_DANRE 28S ribosomal protein S15, mitochondrial OS=Danio rerio GN=mrps15 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 64/128 (50%)

Query: 431 EYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTV 490
           EYA     +S D+ VKK+ +       + + L +++ +  V+R + D +S EV +   T 
Sbjct: 89  EYASVPLAQSVDDVVKKLLTLEFANHSEKLRLKEEQLIAKVQRDENDRSSTEVKVAILTA 148

Query: 491 SIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPT 550
            IR+ QEH    P DK  K W+   IDKR K L+ LR   Y  FE +  EL I +   P 
Sbjct: 149 RIRNFQEHLHKHPKDKANKRWMLMTIDKRKKLLKFLRRTRYDSFEKVCKELGITYTFPPE 208

Query: 551 ILNKVHRK 558
              +V R+
Sbjct: 209 YYRRVTRR 216

Danio rerio (taxid: 7955)

>sp|Q8GWZ6|SRR1_ARATH Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 182 QIICYGIGNFTDSIAAKYQFVLLLLLKIEYDC---EILIYDPIFNELELELIEIFKLELI 238
           Q++ YGIG+     + ++Q  + +L+K E+D     I ++DP+ +  E   +E     ++
Sbjct: 102 QMVMYGIGSIESYESPRFQLSIAILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVL 161

Query: 239 IQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSI 288
             NE+ +       TL +MP C   L +N+L +NW  + LS + L  NS 
Sbjct: 162 SVNEQARREALKP-TLFFMPHCEANLYSNLLQANWRMDRLSKIALFGNSF 210

Probable regulator involved in a circadian clock input pathway, which is required for normal oscillator function. Regulates the expression of clock-regulated genes such as CCA1 and TOC1. Involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NAP9|RT15_CAEEL 28S ribosomal protein S15, mitochondrial OS=Caenorhabditis elegans GN=K07A12.7 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)

Query: 420 LGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDT 479
           L  +E  K   +Y   + L +A E VKKIFS     RK+  +  K+  + SV++H LD+ 
Sbjct: 87  LPRIEKSKTRAKYEDLDVLSNAPESVKKIFSVEMATRKELSQEWKQSLIKSVRQHSLDEN 146

Query: 480 SREVLITKYTVSIR-------SLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYK 532
           S E+ I   T  IR        + +  K KP     ++WL  +I++R K LR+LR  N  
Sbjct: 147 SLEMKIAWLTALIRHWSLLVNDIGQETKKKPTWLTHRIWL--VINERRKALRILRERNET 204

Query: 533 VFEWLLDELKIVF----RPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQE 587
            FE  +  LKI +    +P      K   +  L+  V+    + K +RL +L  K+++E
Sbjct: 205 AFEKTIAALKISYHVPKQPAHVKTRKAWAEAQLKLRVE----NEKEKRLEELHEKYDKE 259

Caenorhabditis elegans (taxid: 6239)

>sp|Q5XI37|RT15_RAT 28S ribosomal protein S15, mitochondrial OS=Rattus norvegicus GN=Mrps15 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 437 SLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQ 496
           +++  D+ VK+I S     RK+ +++ +++ ++ +  +  D  + E  I   TV IR+ +
Sbjct: 81  NMEKVDDVVKRILSLEMASRKEKLKIKREQLMNKIAENPEDYRTLEARIVALTVKIRNYE 140

Query: 497 EHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVH 556
           EH +    DK  K  L   ID+R K LRLLR  NY VFE    EL + +   P    +VH
Sbjct: 141 EHMQKHRKDKVHKRHLLMSIDQRKKFLRLLRQTNYDVFEKTCKELGVEYALPPLHFQRVH 200

Query: 557 RKESLRFLVDKHI 569
           R    RFL  K +
Sbjct: 201 R----RFLAKKAL 209

Rattus norvegicus (taxid: 10116)

>sp|Q9DC71|RT15_MOUSE 28S ribosomal protein S15, mitochondrial OS=Mus musculus GN=Mrps15 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 437 SLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQ 496
           +++  D+ VK+I S     RK+ +++ +++ ++ +  +  D  + E  I   TV IR+ +
Sbjct: 82  NIEKVDDVVKRILSLEMASRKEKLKIKQEQLMNKIVENPEDSRTLEAQIIALTVRIRNYE 141

Query: 497 EHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVH 556
           EH +    DK  K  L   ID+R K L++LR  NY VFE    EL + +   P    KVH
Sbjct: 142 EHMQKHRKDKAHKRHLLMSIDRRKKLLKILRQTNYDVFEKTCKELGVEYTLPPLHFQKVH 201

Query: 557 RKESLRFLVDKHI 569
           R    RFL  K +
Sbjct: 202 R----RFLAKKAL 210

Mus musculus (taxid: 10090)

>sp|Q06688|SRR1L_YEAST SRR1-like protein BER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BER1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 179 GINQIICYGIGNFTDSIAAKYQFVLLLLL------KIEYDCEILIYDPIFNELELELIEI 232
            I +I C  IGNF +   A YQF LLL +      + E D  + +YDPIF + E++ ++ 
Sbjct: 53  NIKKIRCVAIGNFKEDFPATYQFALLLEITDYIKSEDERDVVVSLYDPIFTKEEIQYLKS 112

Query: 233 FKLELIIQNEECKH-TITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTV 291
              + +I+ E  ++  I +   L ++P  P+ L  NIL S        +L L +N I   
Sbjct: 113 LGSKWLIEEEFSENDAIDYESVLYFLPHAPLDLTENILSS-----QRPHLWLANNMI--- 164

Query: 292 VDSNTDAFLKSNL 304
             S+TD + K+ L
Sbjct: 165 --SHTDRYTKAKL 175

Involved in microtubule stability and kinetochore function. May be involved in protein N-terminus acetylation and/or proteasome biogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	648
193587120	267	PREDICTED: 28S ribosomal protein S15, mi	0.391	0.951	0.463	7e-51
239790170	211	ACYPI007377 [Acyrthosiphon pisum]	0.316	0.971	0.466	8e-40
170032218	278	28S ribosomal protein S15, mitochondrial	0.399	0.931	0.386	3e-37
332376915	271	unknown [Dendroctonus ponderosae]	0.371	0.889	0.414	1e-36
328788725	288	PREDICTED: 28S ribosomal protein S15, mi	0.371	0.836	0.400	3e-36
91083577	269	PREDICTED: similar to AGAP005615-PA [Tri	0.401	0.966	0.370	6e-36
157107244	276	28S ribosomal protein S15, mitochondrial	0.388	0.913	0.393	8e-36
157116896	276	28S ribosomal protein S15, mitochondrial	0.388	0.913	0.389	5e-35
340725555	287	PREDICTED: SRR1-like protein-like [Bombu	0.324	0.731	0.372	2e-34
350403751	287	PREDICTED: SRR1-like protein-like [Bombu	0.324	0.731	0.372	1e-33

>gi|193587120|ref|XP_001952175.1| PREDICTED: 28S ribosomal protein S15, mitochondrial-like [Acyrthosiphon pisum]

 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/257 (46%), Positives = 170/257 (66%), Gaps = 3/257 (1%)

Query: 373 VSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEY 432
           + SLI  G G+   +V G K  + IKW RPE +A  DP+KSGD +  L PL++ KP LEY
Sbjct: 5   LRSLIHPGNGVI-LSVRGLKSDLHIKWVRPEKIACWDPKKSGD-LSPLKPLDMSKPPLEY 62

Query: 433 AKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSI 492
              E LK+A+E+V+K+FSC   GR+ A +L +++ +D VK ++LD TS EV I   T +I
Sbjct: 63  QDSEELKTANEYVRKVFSCDFMGRRYATQLARQQLIDKVKANNLDFTSCEVQIASMTANI 122

Query: 493 RSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTIL 552
           R+LQEH+K  P DK ++V LKE+IDKR K L+ LRT +YK FEWLL+ L +++ P P   
Sbjct: 123 RNLQEHYKLSPRDKNSRVALKEIIDKRKKRLKHLRTWDYKKFEWLLENLDLMYHPHPPY- 181

Query: 553 NKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKE 612
            +V RK+SLR L  K   +VK+++L + R + + EK  F K+K E LEW  ++E + G E
Sbjct: 182 ERVERKKSLRRLTSKWCDEVKSKKLAEYRTELDNEKEKFLKQKLETLEWAKKEEVECGVE 241

Query: 613 PTVTKEEIESIWKKYEE 629
           PT+T  +IE+  K+ EE
Sbjct: 242 PTITDADIENARKQLEE 258

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790170|dbj|BAH71662.1| ACYPI007377 [Acyrthosiphon pisum]

 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 97/208 (46%), Positives = 139/208 (66%), Gaps = 3/208 (1%)

Query: 373 VSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEY 432
           + SLI  G G+   +V G K  + IKW RPE +A  DP+KSGD +  L PL++ KP LEY
Sbjct: 5   LRSLIHPGNGVI-LSVRGLKSDLHIKWVRPEKIACWDPKKSGD-LSPLKPLDMSKPPLEY 62

Query: 433 AKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSI 492
              E LK+A+E+V+K+FSC   GR+ A +L +++ +D VK ++LD TS EV I   T +I
Sbjct: 63  QDSEELKTANEYVRKVFSCDFMGRRYATQLARQQLIDKVKANNLDFTSCEVQIASMTANI 122

Query: 493 RSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTIL 552
           R+LQEH+K  P DK ++V LKE+IDKR K L+ LRT +YK FEWLL+ L +++ P P   
Sbjct: 123 RNLQEHYKLSPRDKNSRVALKEIIDKRKKRLKHLRTWDYKKFEWLLENLDLMYHPHPPY- 181

Query: 553 NKVHRKESLRFLVDKHIGDVKTERLTQL 580
            +V RK+SLR L  K   +VK+++  ++
Sbjct: 182 ERVERKKSLRRLTSKWCDEVKSKKTGRI 209

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032218|ref|XP_001843979.1| 28S ribosomal protein S15, mitochondrial [Culex quinquefasciatus] gi|167872095|gb|EDS35478.1| 28S ribosomal protein S15, mitochondrial [Culex quinquefasciatus]

 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 156/261 (59%), Gaps = 2/261 (0%)

Query: 373 VSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEY 432
           +  L+  GAGL   N   +K  +KIKW RPE +    P KSGD ++ L  L+  +   ++
Sbjct: 7   LRPLVNGGAGLISRNY-AFKSDLKIKWVRPEKIPCYKPAKSGD-LVPLPALKGGELMKDF 64

Query: 433 AKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSI 492
            +   L SAD+ VK +F+  H  R++ +E+ K + V  V+RH+LD  S E  +   T  I
Sbjct: 65  RQSNELDSADDSVKNLFTLEHNRRREMLEVFKDEMVKRVQRHELDYGSIEAKLGLMTAQI 124

Query: 493 RSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTIL 552
           RSLQE  +  P    AKV LKELIDKR + LR LR  +Y+ FE++L++L +V++P P   
Sbjct: 125 RSLQEVMEKFPRQSAAKVHLKELIDKRKRFLRYLRRWDYRRFEYILEKLDLVYKPYPAEF 184

Query: 553 NKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKE 612
           + + RK+SLR L D H  ++KT RL   R     ++++F  KK E L++  +++++    
Sbjct: 185 HWITRKDSLRKLTDIHCDEIKTTRLQNYRQLLESQQLDFLAKKLENLQFIRKEQQECKVP 244

Query: 613 PTVTKEEIESIWKKYEELAEK 633
            TVT E+I+++ K+YEEL EK
Sbjct: 245 VTVTPEQIQAVKKQYEELKEK 265

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376915|gb|AEE63597.1| unknown [Dendroctonus ponderosae]

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 147/246 (59%), Gaps = 5/246 (2%)

Query: 390 GYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPT--LEYAKCESLKSADEHVKK 447
            +K  +KIKW RPE +    P+KSGD     G  E DK    LE+   + L+SA+EHVK+
Sbjct: 22  AFKTDLKIKWVRPEKIPCYKPQKSGDLA---GIPEQDKGQYLLEFRNSKELESANEHVKR 78

Query: 448 IFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKR 507
           +F+      K   +  ++   D V+ HD D +S EV + ++T  IR+ QE  +  P ++R
Sbjct: 79  LFTLEFNPSKCTKKAYRQASTDLVRSHDFDHSSIEVRLARWTGYIRAWQEVVERFPRNQR 138

Query: 508 AKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDK 567
            KV LKELIDKR KHL+ LR  +YK FEWL+++L IV++P P+  + + RKESL  L DK
Sbjct: 139 LKVCLKELIDKRKKHLKYLRRWDYKKFEWLIEQLNIVYKPPPSEFHWITRKESLVKLTDK 198

Query: 568 HIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKY 627
              ++K ERL  LR KF  E+  F ++K   LE+   ++K  G + TV  EEI+ + K+ 
Sbjct: 199 FCENIKQERLNTLRLKFESEQPAFLEEKIRSLEFIRNEQKDCGVDVTVQDEEIDKVKKQL 258

Query: 628 EELAEK 633
           EEL  K
Sbjct: 259 EELKSK 264

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788725|ref|XP_003251173.1| PREDICTED: 28S ribosomal protein S15, mitochondrial-like [Apis mellifera]

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/242 (40%), Positives = 147/242 (60%), Gaps = 1/242 (0%)

Query: 396 KIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRG 455
           KI+W RP  ++  DPRKSGD  L + P++     L Y   + LK+AD+ VKKIF+   + 
Sbjct: 33  KIQWVRPVKISSVDPRKSGDLGLNI-PIKSTDTQLYYENSKELKNADDLVKKIFTLEFQR 91

Query: 456 RKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKEL 515
            K+   L ++K +  VKRH  D  S EV I   T  I+ LQ+H +  P +   KV+LKEL
Sbjct: 92  GKETRNLSREKIIALVKRHVCDRGSPEVKIAALTAEIQYLQKHMEIHPRNVSVKVFLKEL 151

Query: 516 IDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTE 575
           IDKR K+L+LLR  +YK FEW+L+ L + +   P I  KV RK++LR L   +   +  E
Sbjct: 152 IDKRKKYLKLLRKWDYKRFEWVLERLNLTYTAEPEITGKVSRKDALRKLTKNYCDTLIQE 211

Query: 576 RLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKEL 635
           +L   + +  +++  FY +K + LE+  + EK+YG E +VT+E+IE+  KK EEL+++  
Sbjct: 212 KLDAFKKELKEQQKIFYAEKVKKLEYISKVEKEYGLERSVTQEDIEATLKKVEELSKENF 271

Query: 636 EQ 637
           +Q
Sbjct: 272 QQ 273

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083577|ref|XP_968136.1| PREDICTED: similar to AGAP005615-PA [Tribolium castaneum] gi|270006846|gb|EFA03294.1| hypothetical protein TcasGA2_TC013234 [Tribolium castaneum]

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 156/262 (59%), Gaps = 2/262 (0%)

Query: 373 VSSLIKVGA-GLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLE 431
           V + +++GA  L       +K  +KIKW RPE +    P KSGD +  +  ++L +P L 
Sbjct: 3   VLTSVRLGALTLKSARTYAFKSDLKIKWVRPEKIPCIKPEKSGD-LEAMMKIDLSQPQLP 61

Query: 432 YAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVS 491
           +   + L++ADE VKK+FS  +  R++  ++   +    VKRH+ D  S EV I ++T  
Sbjct: 62  FRGSKELETADETVKKLFSLEYAPRRKLTQVYGYEMKQLVKRHEFDTGSVEVQIARWTAI 121

Query: 492 IRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTI 551
           IR+ Q+  +  P +K  KV LKE+ID+R K L+ LR  +YK FEWLL+ LKIV++P P  
Sbjct: 122 IRAYQDLMEKFPRNKVMKVVLKEMIDRRKKKLKYLRRWDYKRFEWLLEALKIVYKPPPDH 181

Query: 552 LNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGK 611
            + + RKESLR L + +  D++  RL + +     E+  F ++K   LE+   ++++ G 
Sbjct: 182 FHWITRKESLRKLTNNYCEDIRQRRLDEYKQLLQNEQPVFLQEKIRALEFIRNEQRECGV 241

Query: 612 EPTVTKEEIESIWKKYEELAEK 633
           E TVT EE+E++ K+ +EL E+
Sbjct: 242 EVTVTDEEVEAVRKQLKELEEQ 263

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107244|ref|XP_001649689.1| 28S ribosomal protein S15, mitochondrial precursor [Aedes aegypti] gi|108868702|gb|EAT32927.1| AAEL014836-PA [Aedes aegypti]

 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 152/254 (59%), Gaps = 2/254 (0%)

Query: 380 GAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLK 439
             GL   N   +K  +KIKW RPE +    P+KSGD +L + P+   +   ++   + L+
Sbjct: 13  SVGLISRNY-AFKSDLKIKWVRPEKIPCYKPQKSGD-LLPMRPIAGSELLKDFRMSKELE 70

Query: 440 SADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHH 499
           SAD+ VK +FS  H  R++ +E  K++ V  V+RH+LD  S E  +   T  IRSLQE  
Sbjct: 71  SADDTVKAMFSLDHNRRREMLENFKEEMVKRVQRHELDYGSIEAKLGLMTAQIRSLQEVM 130

Query: 500 KAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKE 559
           +  P    AKV LKELIDKR + LR LR  +Y+ FE++L++L +V++P PT  + + RK+
Sbjct: 131 EKFPRQSAAKVHLKELIDKRKRFLRYLRRWDYRRFEYILEKLDLVYKPYPTHFHWITRKD 190

Query: 560 SLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEE 619
           SLR L D H  D+K  RL   R     ++++F  KK E LE+  +++ +     TV+ E+
Sbjct: 191 SLRKLTDIHCDDIKNTRLQNYRQLLESQQLDFLAKKLENLEFIRKEQIECKVPVTVSVEQ 250

Query: 620 IESIWKKYEELAEK 633
           I+++ K+YEEL EK
Sbjct: 251 IQAVKKQYEELKEK 264

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116896|ref|XP_001652897.1| 28S ribosomal protein S15, mitochondrial precursor [Aedes aegypti] gi|108883425|gb|EAT47650.1| AAEL001280-PA [Aedes aegypti]

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 151/254 (59%), Gaps = 2/254 (0%)

Query: 380 GAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLK 439
             GL   N   +K  +KIKW RPE +    P+KSGD +L + P+   +   ++   + L+
Sbjct: 13  SVGLISRNY-AFKSDLKIKWVRPEKIPCYKPQKSGD-MLPMRPIAGSELLKDFRMSKELE 70

Query: 440 SADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHH 499
           SAD+ VK +FS  H  R++ +E  K++ V  V+RH+LD  S E  +   T  IRSLQE  
Sbjct: 71  SADDTVKAMFSLDHNRRREMLENFKEEMVKRVQRHELDYGSIEAKLGLMTAQIRSLQEVM 130

Query: 500 KAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKE 559
           +  P    AKV LKELIDKR + LR LR  +Y+ FE++L++L +V++P PT  + + RK+
Sbjct: 131 EKFPRQSAAKVHLKELIDKRKRFLRYLRRWDYRRFEYILEKLDLVYKPYPTHFHWITRKD 190

Query: 560 SLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEE 619
           SLR L D H  D+K  RL   R     ++++F  KK E LE+  +++ +     TV+ E+
Sbjct: 191 SLRKLTDIHCDDIKNTRLQNYRQLLESQQLDFLAKKLENLEFIRKEQIECKVPVTVSVEQ 250

Query: 620 IESIWKKYEELAEK 633
           I+++ K+Y EL EK
Sbjct: 251 IQAVKKQYGELKEK 264

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725555|ref|XP_003401134.1| PREDICTED: SRR1-like protein-like [Bombus terrestris]

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 131/215 (60%), Gaps = 5/215 (2%)

Query: 139 SIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAK 198
           ++F ++   + E+ +S +   + + +  SL  ++ NS+  GI  I+CYG+G+F+   ++K
Sbjct: 46  TLFGKLLEAEVEVKNSSFADNVFHYLKDSL--TALNSS--GICDILCYGLGHFSTHRSSK 101

Query: 199 YQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMP 258
           YQ  LLL LK  YD +I +YDP+F+  E++ ++     +I  NEECK  I    TLVYMP
Sbjct: 102 YQLALLLSLKKHYDPQIYVYDPVFSSEEIKFLKQLDFNVITINEECKRVIGDNVTLVYMP 161

Query: 259 RCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVP 318
            C + LINN LY+NW + NL+  ILL+NS S V D        S + ++F I+ ++ E+ 
Sbjct: 162 HCSVHLINNFLYANWCK-NLNKCILLTNSFSIVADDLRKTNKSSPIDYVFRIRPYVTEIA 220

Query: 319 VVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLR 353
           + N+F + ++FND S+H FL   +N+I +  W+ R
Sbjct: 221 LRNDFIYEEVFNDLSIHTFLEQNINAIPESFWNTR 255

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403751|ref|XP_003486891.1| PREDICTED: SRR1-like protein-like [Bombus impatiens]

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 131/215 (60%), Gaps = 5/215 (2%)

Query: 139 SIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAK 198
           ++F ++   + EL +S +   + + +  SL  ++ NS+  GI  I+CYG+G+F+   ++K
Sbjct: 46  TLFGKLLEAEVELKNSSFADNVFHYLKDSL--TALNSS--GICDILCYGLGHFSTHRSSK 101

Query: 199 YQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMP 258
           YQ  LLL LK  Y+ +I +YDP+F+  E++ ++     +I  NEECK  I    TLVYMP
Sbjct: 102 YQLALLLSLKKHYNPQIYVYDPVFSSDEIKFLKQLDFNVITINEECKRIIGDNVTLVYMP 161

Query: 259 RCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVP 318
            C + LINN LY+NW + NL+  ILL+NS S V D   +    S + ++F I+ ++ E+ 
Sbjct: 162 HCSVHLINNFLYANWCK-NLNKCILLTNSFSIVADDLREKNKSSPIDYVFRIRPYVTEIT 220

Query: 319 VVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLR 353
           + N+F + ++FND S+H FL   +N+I +  W  R
Sbjct: 221 LRNDFVYEEVFNDLSIHTFLEQNINAIPESFWSTR 255

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	648
FB|FBgn0026261	280	bonsai "bonsai" [Drosophila me	0.353	0.817	0.378	1e-36
UNIPROTKB|Q9UH36	339	SRRD "SRR1-like protein" [Homo	0.271	0.519	0.331	9.4e-21
ZFIN|ZDB-GENE-060825-269	274	srrd "SRR1 domain containing"	0.276	0.653	0.282	5.5e-16
UNIPROTKB|E1BBB4	256	MRPS15 "28S ribosomal protein	0.197	0.5	0.335	1.3e-11
ZFIN|ZDB-GENE-040718-188	263	mrps15 "mitochondrial ribosoma	0.228	0.562	0.317	1.5e-11
WB|WBGene00010624	330	mrps-15 [Caenorhabditis elegan	0.313	0.615	0.275	5e-11
RGD|1359675	257	Mrps15 "mitochondrial ribosoma	0.217	0.548	0.310	2.4e-10
UNIPROTKB|I3L8X7	253	MRPS15 "Uncharacterized protei	0.199	0.509	0.325	2.9e-10
FB|FBgn0038582	276	CG7988 [Drosophila melanogaste	0.300	0.706	0.25	7.2e-10
MGI|MGI:1913657	258	Mrps15 "mitochondrial ribosoma	0.195	0.492	0.328	1.1e-09

FB|FBgn0026261 bonsai "bonsai" [Drosophila melanogaster (taxid:7227)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 87/230 (37%), Positives = 131/230 (56%)

Query:   391 YKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFS 450
             +K  +KIKW RPE +A   P KSGD + +L PL+ D+   EY  C+ L  ADE VK +F 
Sbjct:    21 FKSDLKIKWMRPEKIACYKPEKSGD-LAKLPPLKADELLPEYRDCKELDKADESVKSLFK 79

Query:   451 CAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKV 510
              ++       +  + + V  V+RH  D  S E  + K T  IR  QEH    P DK  KV
Sbjct:    80 LSNNASYLTTKFYRDEMVKEVQRHAQDFGSMEAKLAKMTAVIRRYQEHMDKHPRDKMIKV 139

Query:   511 WLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIG 570
              LKELIDKR K L+ LR  +Y  FEW+L++L +V++P PT  + + RKESL+ L D +  
Sbjct:   140 RLKELIDKRKKFLKYLRRWDYPRFEWILEKLDLVYKPPPTHFHWITRKESLQKLTDIYCE 199

Query:   571 DVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEI 620
             ++K ERL     +   ++I F ++  + +++  +++       TVT+E+I
Sbjct:   200 NLKEERLEAYHKQLQAQQIPFLEEAIKKMQFVRQEQISCDVPVTVTEEKI 249

GO:0040008 "regulation of growth" evidence=IMP

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q9UH36 SRRD "SRR1-like protein" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 9.4e-21, P = 9.4e-21
 Identities = 61/184 (33%), Positives = 87/184 (47%)

Query:   184 ICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEI-----LIYDPXXXXXXXXXXXXXXXXXX 238
             +CYGIGNF   I A+ Q   LLLL +E  C+I      +YDP                  
Sbjct:   142 VCYGIGNFATCIVARNQLTFLLLL-LE-KCQIPRSHCWVYDPLFSQLEIEVLNTLGVTVL 199

Query:   239 XQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTREXXXXXXXXXXXXXTVVDSNTDA 298
              +NEE K +I    T+ YM  C   L NN+L+SNW+ +              + +     
Sbjct:   200 SENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEERLLAR 259

Query:   299 FLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPE 358
              L+ N  ++  I + LEE+      ++ DIFNDTS+H F   KL  +  DIW+ R  EP+
Sbjct:   260 ILQKNYPYIAKILKGLEELEFPQTSQYMDIFNDTSVHWFPVQKLEQLSIDIWEFRE-EPD 318

Query:   359 YTEC 362
             Y +C
Sbjct:   319 YQDC 322

GO:0048511 "rhythmic process" evidence=IEA

ZFIN|ZDB-GENE-060825-269 srrd "SRR1 domain containing" [Danio rerio (taxid:7955)]

 Score = 208 (78.3 bits), Expect = 5.5e-16, P = 5.5e-16
 Identities = 52/184 (28%), Positives = 80/184 (43%)

Query:   182 QIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEI---LIYDPXXXXXXXXXXXXXXXXXX 238
             Q +CYG+G+F   ++A++Q  +LLLL       +    +YDP                  
Sbjct:    82 QCVCYGLGHFESCVSARFQLAMLLLLLETLQIPMSSCCVYDPVFSPSECDALKELGFTVL 141

Query:   239 XQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTREXXXXXXXXXXXXXTVVDSNTDA 298
              +NEE K  + +  TL Y+  C   L NN+L+ NWT                + +     
Sbjct:   142 TENEEGKRAV-YQPTLFYLMHCGKALYNNLLWRNWTPRTLQKMTIIGNSFNGIQERMLQR 200

Query:   299 FLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPE 358
              L+ +  FL H+    EE P+  + +F D+FNDT+L  F    LN + +  W     EP 
Sbjct:   201 ELERDYSFLSHMIGVCEETPLSCSSRFLDVFNDTALIQFPLEDLNKLPECTWT-EPSEPL 259

Query:   359 YTEC 362
             Y  C
Sbjct:   260 YQHC 263

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BBB4 MRPS15 "28S ribosomal protein S15, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 43/128 (33%), Positives = 66/128 (51%)

Query:   431 EYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTV 490
             +Y     ++  D+ VK++ S     +K+ +++ K++ +  V  +  D +S E  I   TV
Sbjct:    74 DYQNVPGIEKVDDVVKRLISLEMANKKEMLKIKKEQLMSKVVENPKDTSSLEAQIVALTV 133

Query:   491 SIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPT 550
              IRS +EH +    DK  K +L   IDKR K L+ LR  NY VFE    EL I +   P 
Sbjct:   134 KIRSYEEHMQKHQKDKAHKRYLLMSIDKRQKMLKNLRKTNYPVFEKTCKELGIEYTFPPP 193

Query:   551 ILNKVHRK 558
                K+HR+
Sbjct:   194 YHRKIHRR 201

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-040718-188 mrps15 "mitochondrial ribosomal protein S15" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 47/148 (31%), Positives = 71/148 (47%)

Query:   411 RKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDS 470
             RK  +   +L  L+      EYA     +S D+ VKK+ +       + + L +++ +  
Sbjct:    69 RKKQEFPSQLEDLKTSMLKHEYASVPLAQSVDDVVKKLLTLEFANHSEKLRLKEEQLIAK 128

Query:   471 VKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTEN 530
             V+R + D +S EV +   T  IR+ QEH    P DK  K W+   IDKR K L+ LR   
Sbjct:   129 VQRDENDRSSTEVKVAILTARIRNFQEHLHKHPKDKANKRWMLMTIDKRKKLLKFLRRTR 188

Query:   531 YKVFEWLLDELKIVFRPGPTILNKVHRK 558
             Y  FE +  EL I +   P    +V R+
Sbjct:   189 YDSFEKVCKELGITYTFPPEYYRRVTRR 216

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00010624 mrps-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 180 (68.4 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 62/225 (27%), Positives = 107/225 (47%)

Query:   412 KSGDQIL----ELG-P-LELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKK 465
             K+ D ++    E G P +E  K   +Y   + L +A E VKKIFS     RK+  +  K+
Sbjct:    73 KAADNLILEKTEFGLPRIEKSKTRAKYEDLDVLSNAPESVKKIFSVEMATRKELSQEWKQ 132

Query:   466 KHVDSVKRHDLDDTSREV-------LITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDK 518
               + SV++H LD+ S E+       LI  +++ +  + +  K KP     ++WL  +I++
Sbjct:   133 SLIKSVRQHSLDENSLEMKIAWLTALIRHWSLLVNDIGQETKKKPTWLTHRIWL--VINE 190

Query:   519 RNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLT 578
             R K LR+LR  N   FE  +  LKI +       +   RK      +   + + K +RL 
Sbjct:   191 RRKALRILRERNETAFEKTIAALKISYHVPKQPAHVKTRKAWAEAQLKLRVENEKEKRLE 250

Query:   579 QLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESI 623
             +L  K+++E +  +K++      T E+ K    E     +E+  I
Sbjct:   251 ELHEKYDKE-VEEHKRE------TQEKRKALNNELDKLAQEMRQI 288

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

RGD|1359675 Mrps15 "mitochondrial ribosomal protein S15" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 45/145 (31%), Positives = 76/145 (52%)

Query:   437 SLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQ 496
             +++  D+ VK+I S     RK+ +++ +++ ++ +  +  D  + E  I   TV IR+ +
Sbjct:    81 NMEKVDDVVKRILSLEMASRKEKLKIKREQLMNKIAENPEDYRTLEARIVALTVKIRNYE 140

Query:   497 EHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVH 556
             EH +    DK  K  L   ID+R K LRLLR  NY VFE    EL + +   P    +VH
Sbjct:   141 EHMQKHRKDKVHKRHLLMSIDQRKKFLRLLRQTNYDVFEKTCKELGVEYALPPLHFQRVH 200

Query:   557 R----KESLRFLVDKHIGDVKTERL 577
             R    K++L   V + +  +K +R+
Sbjct:   201 RRFLAKKALCIQVFQEVQKLKKQRM 225

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

UNIPROTKB|I3L8X7 MRPS15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 168 (64.2 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 42/129 (32%), Positives = 66/129 (51%)

Query:   430 LEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYT 489
             L+Y     +   D+ VK++ S     +K+ +++ K + ++ V  +  D +S E  I   T
Sbjct:    75 LDYQNVPGIHKVDDVVKRLLSLEMANQKEKLKIKKMQLMNKVLENPEDTSSLEARIVALT 134

Query:   490 VSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGP 549
             V IR+ +EH +    DK  K +L   ID+R K L+ LR  NY VFE +  EL I +   P
Sbjct:   135 VKIRNYEEHMQKHRKDKAHKRFLLMSIDQRKKMLKNLRETNYAVFEKICKELGIEYTFPP 194

Query:   550 TILNKVHRK 558
                 K HR+
Sbjct:   195 PYHRKAHRR 203

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

FB|FBgn0038582 CG7988 [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 53/212 (25%), Positives = 88/212 (41%)

Query:   143 RIESVKEELGSSDYYXXXXXXXXXXXXXXXXXXTTQGINQIICYGIGNFTDSIAAKYQFV 202
             R+E++  E+  SDY+                    + + +I+C G+G F+ +  A +Q  
Sbjct:    49 RLENLCTEMCQSDYFLVAMEALQQQLEGIR-----KPLERIVCLGLGPFSRTYHALHQAA 103

Query:   203 LLLLLKIEYDC-EILIYDPXXXXXXXXXXXXXXXXXXXQNEECKHTITHAKTLVYMPRCP 261
              ++ L   +   E L +DP                   ++   KH  T   TL Y+P CP
Sbjct:   104 FVIGLHRHHKIREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEAT-VPTLYYLPHCP 162

Query:   262 IQLINNILYSNWTREXX--XXXXXXXXXXXTVVDSNTDAFLKSNLQFLFHIKEFLEEVPV 319
               L++NIL+SNW RE               T+   N D         +  I E   E P+
Sbjct:   163 YALMHNILWSNWKRETLPNVFLISNSFEMLTMTPRNQD-------DHITRIVEHCTETPL 215

Query:   320 VNNFKFNDIFNDTSLHCFLPTKL-NSIEQDIW 350
              ++++ +++FND SLH F    L  S ++  W
Sbjct:   216 EDDYEHHNVFNDLSLHTFPQESLPGSNDEAFW 247

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0007623 "circadian rhythm" evidence=ISS

MGI|MGI:1913657 Mrps15 "mitochondrial ribosomal protein S15" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 43/131 (32%), Positives = 68/131 (51%)

Query:   437 SLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQ 496
             +++  D+ VK+I S     RK+ +++ +++ ++ +  +  D  + E  I   TV IR+ +
Sbjct:    82 NIEKVDDVVKRILSLEMASRKEKLKIKQEQLMNKIVENPEDSRTLEAQIIALTVRIRNYE 141

Query:   497 EHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKVH 556
             EH +    DK  K  L   ID+R K L++LR  NY VFE    EL + +   P    KVH
Sbjct:   142 EHMQKHRKDKAHKRHLLMSIDRRKKLLKILRQTNYDVFEKTCKELGVEYTLPPLHFQKVH 201

Query:   557 RKESLRFLVDK 567
             R    RFL  K
Sbjct:   202 R----RFLAKK 208

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	648
pfam07985	56	pfam07985, SRR1, SRR1	9e-15
PLN03093	273	PLN03093, PLN03093, Protein SENSITIVITY TO RED LIG	1e-11
cd00353	80	cd00353, Ribosomal_S15p_S13e, Ribosomal protein S1	4e-09
PLN03093	273	PLN03093, PLN03093, Protein SENSITIVITY TO RED LIG	4e-04
COG0184	89	COG0184, RpsO, Ribosomal protein S15P/S13E [Transl	6e-04
TIGR00952	86	TIGR00952, S15_bact, ribosomal protein S15, bacter	0.001
cd00677	46	cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-b	0.003

>gnl|CDD|219682 pfam07985, SRR1, SRR1

 Score = 68.7 bits (169), Expect = 9e-15
 Identities = 23/55 (41%), Positives = 41/55 (74%), Gaps = 3/55 (5%)

Query: 182 QIICYGIGNFTDSIAAKYQFVLLLLLKIEYDC---EILIYDPIFNELELELIEIF 233
           +I+C G+G+F++S AA+YQ  LLLLLK +++    ++ +YDP+F+ L+ E++E  
Sbjct: 1   RIVCLGLGSFSESEAARYQLALLLLLKEKFNIPPKDVSVYDPVFSPLDKEVLESL 55

SRR1 proteins are signalling proteins involved in regulating the circadian clock in Arabidopsis. Length = 56

>gnl|CDD|178641 PLN03093, PLN03093, Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 13/208 (6%)

Query: 142 RRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGIN---QIICYGIGNFTDSIAAK 198
           +++E   +++ SS +Y   +  + KS  +  +     G     Q++ YGIG+       +
Sbjct: 58  QKMEICIKKVESSQFYQAFLEQV-KSPEVLDSFHLVLGSELKMQMVIYGIGSIESYETPR 116

Query: 199 YQFVLLLLLKIEYDC--EILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVY 256
           +Q  L +L+K E+D   +I ++DP+ +  E  ++E     ++  NE+ +   T   TL +
Sbjct: 117 FQLSLAILMKREFDWIGDIEVFDPVLSATESRVLESLGCSVLSVNEQGRREATKP-TLFF 175

Query: 257 MPRCPIQLINNILYSNWTRENLSNLILLSNSISTV---VDSNTDAFLKSNLQFLFHIKEF 313
           MP C  +L NN+L +NW  E L+++ L  NS       V    ++ +  + + +   ++F
Sbjct: 176 MPHCEAELYNNLLQANWRMERLNHIALFGNSFEMYEEQVSEFFNSEVVDSTKHILAARKF 235

Query: 314 LEE--VPVVNNFKFNDIFNDTSLHCFLP 339
             E  +  V++  F   F+D+S H F P
Sbjct: 236 TSEFAIKTVSDDYFA-AFHDSSWHFFSP 262

Length = 273

>gnl|CDD|238213 cd00353, Ribosomal_S15p_S13e, Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
           K++ +      + D  S EV +   T  I +L EH +    DK +K  L  L+ KR + L
Sbjct: 2   KQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLL 61

Query: 524 RLLRTENYKVFEWLLDEL 541
           + L+ ++   +EWL+++L
Sbjct: 62  KYLKRKDRLRYEWLIEKL 79

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix. Length = 80

>gnl|CDD|178641 PLN03093, PLN03093, Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 12/54 (22%)

Query: 21  TLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSI------------STVVDS 62
           TL +MP C  +L NN+L +NW  E L+++ L  NS             S VVDS
Sbjct: 172 TLFFMPHCEAELYNNLLQANWRMERLNHIALFGNSFEMYEEQVSEFFNSEVVDS 225

Length = 273

>gnl|CDD|223262 COG0184, RpsO, Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
           K++  D     ++D  S EV +   T  I +L EH K    D  ++  L  L+ KR + L
Sbjct: 8   KQELRDEYGIPEVDTGSGEVQLALLTERINNLTEHLKEHKKDHHSRRGLLLLVSKRRRLL 67

Query: 524 RLLRTENYKVFEWLLDELKI 543
           + L+ ++   + WL+ +L +
Sbjct: 68  KYLKRKDVLRYRWLIKKLGL 87

Length = 89

>gnl|CDD|130027 TIGR00952, S15_bact, ribosomal protein S15, bacterial/organelle

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
           K++ +   + H+ D  S EV I   T  I  L EH KA   D  ++  L +L+ +R + L
Sbjct: 5   KQEIIKEFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLL 64

Query: 524 RLLRTENYKVFEWLLDELKI 543
           + L+  + + +  L+  L +
Sbjct: 65  KYLKRTDVERYRSLIKRLGL 84

This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 86

>gnl|CDD|238361 cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-binding domain

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 482 EVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLR 527
           EV I   T  IR+L+EH      DK +K  L  L+ KR + L+ L+
Sbjct: 1   EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	648
PLN03093	273	Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provis	100.0
KOG3131|consensus	281		100.0
PTZ00119	302	40S ribosomal protein S15; Provisional	100.0
PRK05626	89	rpsO 30S ribosomal protein S15; Reviewed	99.97
TIGR00952	86	S15_bact ribosomal protein S15, bacterial/organell	99.97
PF00312	83	Ribosomal_S15: Ribosomal protein S15; InterPro: IP	99.94
cd00353	80	Ribosomal_S15p_S13e Ribosomal protein S15 (prokary	99.94
CHL00027	90	rps15 ribosomal protein S15	99.93
COG0184	89	RpsO Ribosomal protein S15P/S13E [Translation, rib	99.91
PLN03093	273	Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provis	99.85
KOG2815|consensus	256		99.82
PF07985	56	SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red	99.75
KOG3131|consensus	281		99.66
KOG2815|consensus	256		99.57
cd00677	46	S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding dom	99.41
PRK08561	151	rps15p 30S ribosomal protein S15P; Reviewed	98.84
PTZ00072	148	40S ribosomal protein S13; Provisional	94.29

>PLN03093 Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

Probab=100.00  E-value=3.4e-50  Score=409.11  Aligned_cols=207  Identities=23%  Similarity=0.459  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHH--hhhhcccCCCCCCcceEEEEecCCCCCChhhHHHHHHHHHHHHHcC-C-c
Q psy5134         139 SIFRRIESVKEELGSSDYYLQLINLISK--SLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIEYD-C-E  214 (648)
Q Consensus       139 sl~~~l~~~~~~l~~S~f~~~l~e~L~~--~l~~l~~~~~~~~i~~IVCLGLGSfs~s~~AryQLAlLL~L~e~l~-i-~  214 (648)
                      .++++|+.++++++.|.||+.+.++++.  .++.+....++....+|||||||||+.+.+|||||||+++|++.|+ + +
T Consensus        55 kL~~ki~~~~e~ve~S~F~~~l~~q~~~~~~~d~~~~~~gs~~~~~iVclGLGsf~~s~~AR~QLAflLlL~~~~~~i~~  134 (273)
T PLN03093         55 KLIQKMEICIKKVESSQFYQAFLEQVKSPEVLDSFHLVLGSELKMQMVIYGIGSIESYETPRFQLSLAILMKREFDWIGD  134 (273)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHhhccccccceEEEEeecCccccccHHHHHHHHHHHHHHhCCccc
Confidence            5999999999999999999999999884  2333222223334689999999999999999999999999999997 3 7


Q ss_pred             EEEEcCcCCHHHHHHHHHcCceEeecCcccccccCCCceEEEccCCCHHHHHHHHHhccCcCCCCcEEEEecCcchhhcc
Q psy5134         215 ILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDS  294 (648)
Q Consensus       215 v~iyDPvFt~~D~~~L~~LG~~Vl~ene~g~~~~~~~~TLfymPHcp~~Ly~nlL~aNws~~~L~~~iliGNsf~~y~~~  294 (648)
                      |++|||||++.|+++|++||++|+++|++|++.++. ||||||||||+.||+|+||+||++++|+++|||||||++|.++
T Consensus       135 v~vYDPVFs~~e~~~Le~LG~~Vls~neegkr~a~~-pTLFYMPHCp~~LyeNLL~aNWs~e~L~~ivliGNSFe~y~~~  213 (273)
T PLN03093        135 IEVFDPVLSATESRVLESLGCSVLSVNEQGRREATK-PTLFFMPHCEAELYNNLLQANWRMERLNHIALFGNSFEMYEEQ  213 (273)
T ss_pred             EEEECCCCCHHHHHHHHHcCCeeccccccccccCCC-CeEEEeCCCCHHHHHHHHHHhCCHHHcCCEEEEeCCHHHHHHH
Confidence            999999999999999999999999999999999975 9999999999999999999999999999999999999999986


Q ss_pred             cc---hhHhhhchhHHHHHhhhceeeccCC-CCCcccccccceeEeeCCCccCcCc
Q psy5134         295 NT---DAFLKSNLQFLFHIKEFLEEVPVVN-NFKFNDIFNDTSLHCFLPTKLNSIE  346 (648)
Q Consensus       295 ~~---~r~l~~~~~~I~~i~~~~~E~~lp~-~~~~~~AFNDtSih~Fp~~~l~~l~  346 (648)
                      +.   ++....+..||.++.++++|+++.+ +++|.+||||||||+||+..-..||
T Consensus       214 ~~~~~~~~~~~~~~hIla~~~~~~E~~l~~~~dd~~~~FnD~S~H~F~~~~~~~l~  269 (273)
T PLN03093        214 VSEFFNSEVVDSTKHILAARKFTSEFAIKTVSDDYFAAFHDSSWHFFSPGIDTELP  269 (273)
T ss_pred             HHHhcCcccccchHHHHHHHHHhhhheeccCCcchhhhhcccceeecCCccchhhh
Confidence            62   3445567899999999999999985 5589999999999999987665554

>KOG3131|consensus

Probab=100.00  E-value=2e-44  Score=359.41  Aligned_cols=242  Identities=24%  Similarity=0.402  Sum_probs=209.7

Q ss_pred             cceeccccCCCC-cccccccc----hHHHHHHHHHHHHHccChHHHHHHHHHHHhhhhcccCCCCCCcceE-EEEecCCC
Q psy5134         118 MMHVYNELNIPT-SWHILKCS----FSIFRRIESVKEELGSSDYYLQLINLISKSLNLSSANSTTQGINQI-ICYGIGNF  191 (648)
Q Consensus       118 ~~~~~~~~~ip~-~~~~~~~~----~sl~~~l~~~~~~l~~S~f~~~l~e~L~~~l~~l~~~~~~~~i~~I-VCLGLGSf  191 (648)
                      ||..=.-+--++ .-+..+|+    ++++++|+..+.+|++|+|+..++++|++.+..+..     +|.+| ||||||+|
T Consensus        19 Rkk~k~rG~~~k~~dt~iD~~~v~~~~fq~klensr~kle~S~Fl~~~lEqLq~~l~~~~~-----piek~~vclglG~f   93 (281)
T KOG3131|consen   19 RKKLKRRGRHKKESDTLIDCPDVNVEKFQPKLENSRTKLEQSDFLLVALEQLQQQLEGIRK-----PIEKIIVCLGLGPF   93 (281)
T ss_pred             hcccCccCCCccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcc-----chhheEEEEeeccc
Confidence            444333333333 22444565    469999999999999999999999999998865554     78886 99999999


Q ss_pred             CCChhhHHHHHHHHHHHHHcCC---cEEEEcCcCCHHHHHHHHHcCceEeecCcccccccCCCceEEEccCCCHHHHHHH
Q psy5134         192 TDSIAAKYQFVLLLLLKIEYDC---EILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNI  268 (648)
Q Consensus       192 s~s~~AryQLAlLL~L~e~l~i---~v~iyDPvFt~~D~~~L~~LG~~Vl~ene~g~~~~~~~~TLfymPHcp~~Ly~nl  268 (648)
                      ++..+|++|||++++|.++|++   .|++|||||+.+|+++|+++|+.|+++++.|++.+-. ||||||||||.+||+|+
T Consensus        94 ~~~~~a~~Qlal~iei~r~fk~~~~~~s~fDPvf~k~E~eyLeslG~cvLs~~e~~~~ealk-pTLyylPHcp~~LyeNi  172 (281)
T KOG3131|consen   94 SRTYHALHQLALVIEIHRHFKIRDVEASYFDPVFRKSEKEYLESLGGCVLSKDEAGKHEALK-PTLYYLPHCPYALYENI  172 (281)
T ss_pred             cccccHHHHHHHHHHHHHHhccccceeeeeCcchhhhHHHHHHhcCCeEeccCccccccccc-eeeEecCCCchHHHHHH
Confidence            9999999999999999999987   5999999999999999999999999999999997764 99999999999999999


Q ss_pred             HHhccCcCCCCcEEEEecCcchhhcccchhHhhhchhHHHHHhhhceeeccCCCCCcccccccceeEeeCCCccCcCcc-
Q psy5134         269 LYSNWTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQ-  347 (648)
Q Consensus       269 L~aNws~~~L~~~iliGNsf~~y~~~~~~r~l~~~~~~I~~i~~~~~E~~lp~~~~~~~AFNDtSih~Fp~~~l~~l~~-  347 (648)
                      ||+||..+++++++++||||.+|++... ..+.+.++.|.++...+...++-..+++.+||||+|+|+||.+.....++ 
T Consensus       173 L~snw~~Drl~k~~LcgNsfqml~~~v~-~~i~nt~p~I~k~~~~~~ft~l~p~~~~~nafnDlSlhffps~sd~es~~p  251 (281)
T KOG3131|consen  173 LWSNWKRDRLPKVFLCGNSFQMLTMTVH-YPIRNTDPHITKIVEHCTFTPLEPDYEHHNAFNDLSLHFFPSESDPESNDP  251 (281)
T ss_pred             HHHhhhhccccceEEecCcHHHHHhhcc-chhccCChHHHhhhhccccccccCcchhhhccccceeeecccccccccccc
Confidence            9999999999999999999999998765 34557789999999999999888889999999999999999999977775 


Q ss_pred             ccccCCCCCCCccccccceecc
Q psy5134         348 DIWDLRFLEPEYTECNFEKTKS  369 (648)
Q Consensus       348 ~fW~~~~~eP~y~~~~~e~~~~  369 (648)
                      .||+++  .|.. ..+-++|++
T Consensus       252 ~f~~~~--~~~~-v~E~p~i~~  270 (281)
T KOG3131|consen  252 AFWTRC--APLK-VNEDPLITE  270 (281)
T ss_pred             hhhhhh--chhh-hccCcccch
Confidence            699996  5644 556677765

>PTZ00119 40S ribosomal protein S15; Provisional

Probab=100.00  E-value=1.7e-34  Score=292.50  Aligned_cols=146  Identities=17%  Similarity=0.162  Sum_probs=135.4

Q ss_pred             ceeeeeCCCCCccCCCCCccccccccCCCCCCCchhhhhCh---hhhhhHHHHHHHhcccCCCChhhHhHHHHHHHHHHh
Q psy5134         395 IKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKC---ESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSV  471 (648)
Q Consensus       395 ~ki~w~rPe~i~~~~P~kSgd~~~~l~~l~~s~~~~~y~~~---~ele~a~e~VkrilSLe~as~ke~~k~~k~~~i~~f  471 (648)
                      +...-++.+|.++|+-.++.-++      ...+++.+|...   ++++..+|+|+|+|||+|||++|+.+++++++|++|
T Consensus        44 ~~~~k~~a~k~~wy~~ae~~fl~------er~~ip~gY~~~~~~e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkf  117 (302)
T PTZ00119         44 ITAIKTHAQKTEWYLKAERDFLS------ERNQIPNGYIGLWQYDDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCL  117 (302)
T ss_pred             eeeeeecCCCcHHHHHHHHHHHH------HhccCCccceecccccchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHh
Confidence            34456677899999888888888      566777777764   889999999999999999999999999999999999


Q ss_pred             hcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcCCccc
Q psy5134         472 KRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFR  546 (648)
Q Consensus       472 ~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~LgL~y~  546 (648)
                      |++++||||+|||||+||+||++|++||+.|+||++++|||++||+||||||+||+++|+++|+++|++|||+..
T Consensus       118 qr~~~DTGS~EVQIAiLTeRI~~LTeHLk~hkKD~~SrRGLlkLV~KRRKLLkYLKrkD~erY~~lIkkLGLRkv  192 (302)
T PTZ00119        118 QRRPFDTGSAPVQIGCLTEKILNLRAHLILRCKDHPKKRTMSILLARRQKLMKYLYKTDFELYKHTCNLLKIKCI  192 (302)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCceE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999964

>PRK05626 rpsO 30S ribosomal protein S15; Reviewed

Probab=99.97  E-value=2.7e-30  Score=226.25  Aligned_cols=86  Identities=24%  Similarity=0.332  Sum_probs=83.5

Q ss_pred             HhHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy5134         459 AVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLL  538 (648)
Q Consensus       459 ~~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li  538 (648)
                      +++..++++|++|++||+||||+|||||+||+||++|++||+.||||++++|||+++|++|+|+|+||+++|+++|.++|
T Consensus         3 ~~~~~k~~li~~f~~~~~DTGS~eVQiA~LT~rI~~L~~Hlk~~~KD~~srrgL~~lv~kRkrlL~YL~~~d~~~Y~~li   82 (89)
T PRK05626          3 LTKEKKAEIIKEYGRHEGDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKDVERYRALI   82 (89)
T ss_pred             CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHhHHHHHHHHHhcCHHHHHHHH
Confidence            35668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCc
Q psy5134         539 DELKIV  544 (648)
Q Consensus       539 ~~LgL~  544 (648)
                      ++|||+
T Consensus        83 ~~LglR   88 (89)
T PRK05626         83 ERLGLR   88 (89)
T ss_pred             HHhCCC
Confidence            999997

>TIGR00952 S15_bact ribosomal protein S15, bacterial/organelle

Probab=99.97  E-value=3.1e-30  Score=224.55  Aligned_cols=84  Identities=26%  Similarity=0.368  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy5134         461 ELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDE  540 (648)
Q Consensus       461 k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~  540 (648)
                      +..|+++|++|++|++||||+|||||+||+||++|++||+.||||++++|||+++|++|+|+|+||+++|+++|.++|++
T Consensus         2 ~~~k~~li~~~~~~~~DtGS~eVQiA~LT~rI~~L~~Hl~~h~KD~~srrgL~~lv~kRkrlL~YL~~~d~~~Y~~li~~   81 (86)
T TIGR00952         2 KERKQEIIKEFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIKR   81 (86)
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCc
Q psy5134         541 LKIV  544 (648)
Q Consensus       541 LgL~  544 (648)
                      |||+
T Consensus        82 LglR   85 (86)
T TIGR00952        82 LGLR   85 (86)
T ss_pred             hCCC
Confidence            9997

This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13.

>PF00312 Ribosomal_S15: Ribosomal protein S15; InterPro: IPR000589 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.94  E-value=5e-27  Score=203.46  Aligned_cols=83  Identities=37%  Similarity=0.572  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHc
Q psy5134         462 LVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDEL  541 (648)
Q Consensus       462 ~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~L  541 (648)
                      +.++++|++|++||+||||+|||||+||+||++|++|++.||||++++|+|.++|++|+|+|+||+++|+++|.++|++|
T Consensus         1 ~~k~~~i~~~~~~~~dtgs~evqia~LT~rI~~L~~Hl~~~kkD~~skr~L~~lv~kRrrlL~YLrr~~~~~Y~~~~~~L   80 (83)
T PF00312_consen    1 MRKQKSIKKFQRHPNDTGSPEVQIAILTERIRNLQEHLKKNKKDKHSKRGLLKLVSKRRRLLKYLRRKDFERYEWVLKKL   80 (83)
T ss_dssp             -HHHHHHHHHSSSTTSSSSHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccceehhHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCc
Q psy5134         542 KIV  544 (648)
Q Consensus       542 gL~  544 (648)
                      ||+
T Consensus        81 glr   83 (83)
T PF00312_consen   81 GLR   83 (83)
T ss_dssp             TTT
T ss_pred             CcC
Confidence            996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ,], groups bacterial and plant chloroplast S15; archaeal Haloarcula marismortui HmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangi and Wuchereria bancrofti S13. S15 is a protein of 80 to 250 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1YSH_E 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 1S1H_O 3MR8_O 3D5C_O 3MS0_O ....

>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

Probab=99.94  E-value=1e-26  Score=200.28  Aligned_cols=79  Identities=29%  Similarity=0.405  Sum_probs=77.8

Q ss_pred             HHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcC
Q psy5134         464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELK  542 (648)
Q Consensus       464 k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~Lg  542 (648)
                      +++++++|+++++||||+|||||+||+||++|++||+.||||++++|+|.+++++|+|||+||+++|+++|.|+|++||
T Consensus         2 ~~~i~~~~~~~~~DtGs~evQia~LT~rI~~L~~Hl~~~~KD~~~krgL~~lv~kRrrLL~YLk~~~~~~y~~~i~~L~   80 (80)
T cd00353           2 KQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG   80 (80)
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHccccchHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHhcc
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999999997

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.

>CHL00027 rps15 ribosomal protein S15

Probab=99.93  E-value=2e-26  Score=201.65  Aligned_cols=74  Identities=23%  Similarity=0.293  Sum_probs=72.0

Q ss_pred             cCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcCCccc
Q psy5134         473 RHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFR  546 (648)
Q Consensus       473 r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~LgL~y~  546 (648)
                      .+++||||+|||||+||+||++|++||+.||||++++|||++||++|+|||+||+++|+++|+++|++|||+.-
T Consensus        14 ~~~~DTGS~evQiA~LT~rI~~Lt~Hlk~hkKD~~s~RgL~~lv~kRkrLL~YL~r~d~~~Y~~li~~Lglr~~   87 (90)
T CHL00027         14 EKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLISQLGIREL   87 (90)
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCC
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999863

>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=8.8e-25  Score=191.21  Aligned_cols=85  Identities=26%  Similarity=0.389  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134         460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD  539 (648)
Q Consensus       460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~  539 (648)
                      ....+++++++|++++.||||+|||||+||+||.+|++|++.||||++|||||..+++||++||+||+++|.++|.|+++
T Consensus         4 ~~~~k~~l~~eyg~~~~dtgs~evq~a~Lt~ri~~L~~Hlk~hkKD~~srRGL~~~vskrrrLl~Ylk~~~~~~y~~li~   83 (89)
T COG0184           4 TSEIKQELRDEYGIPEVDTGSGEVQLALLTERINNLTEHLKEHKKDHHSRRGLLLLVSKRRRLLKYLKRKDVLRYRWLIK   83 (89)
T ss_pred             hHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCc
Q psy5134         540 ELKIV  544 (648)
Q Consensus       540 ~LgL~  544 (648)
                      .|||+
T Consensus        84 ~l~lr   88 (89)
T COG0184          84 KLGLR   88 (89)
T ss_pred             Hhhcc
Confidence            99996

>PLN03093 Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

Probab=99.85  E-value=5.4e-22  Score=203.12  Aligned_cols=76  Identities=29%  Similarity=0.488  Sum_probs=70.5

Q ss_pred             cccccccccccccccCCCeEEEccCCChhHHHHHHHhcCCcCCCCceEEEecChhhhhhccc---------hHHHHHHhh
Q psy5134           3 LDRMTQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNT---------DALCILALA   73 (648)
Q Consensus         3 ~~vl~~ne~gkr~~~~~~TlfymPHC~~~LynnlL~~Nw~~~~L~~~~ligNsf~~~~~~~~---------~~~~~~~~~   73 (648)
                      |+||++||+|||.+. +||||||||||++|||||||+||++++|+++|||||||++|+++..         ....|+++.
T Consensus       155 ~~Vls~neegkr~a~-~pTLFYMPHCp~~LyeNLL~aNWs~e~L~~ivliGNSFe~y~~~~~~~~~~~~~~~~~hIla~~  233 (273)
T PLN03093        155 CSVLSVNEQGRREAT-KPTLFFMPHCEAELYNNLLQANWRMERLNHIALFGNSFEMYEEQVSEFFNSEVVDSTKHILAAR  233 (273)
T ss_pred             CeeccccccccccCC-CCeEEEeCCCCHHHHHHHHHHhCCHHHcCCEEEEeCCHHHHHHHHHHhcCcccccchHHHHHHH
Confidence            689999999999996 8999999999999999999999999999999999999999998432         568899999


Q ss_pred             HHHHhh
Q psy5134          74 NVVKDK   79 (648)
Q Consensus        74 ~~~~~~   79 (648)
                      ..+.|.
T Consensus       234 ~~~~E~  239 (273)
T PLN03093        234 KFTSEF  239 (273)
T ss_pred             HHhhhh
Confidence            999887

>KOG2815|consensus

Probab=99.82  E-value=1.9e-20  Score=190.38  Aligned_cols=226  Identities=21%  Similarity=0.162  Sum_probs=220.0

Q ss_pred             ccceeeeeCCCCCccCCCCCccccccccCCCCCCCchhhhhChhhhhhHHHHHHHhcccCCCChhhHhHHHHHHHHHHhh
Q psy5134         393 QLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVK  472 (648)
Q Consensus       393 ~d~ki~w~rPe~i~~~~P~kSgd~~~~l~~l~~s~~~~~y~~~~ele~a~e~VkrilSLe~as~ke~~k~~k~~~i~~f~  472 (648)
                      ++++.+|.+++.++++.++.+++.. .|++..++.+...|++...+..+++.|+.++++.++-.+.....+ ++++++++
T Consensus        22 ~~lp~~~~~~~~~~~~~~e~e~~~~-~Lk~~~~~~lr~k~r~~~~~~~~~es~ksl~~l~~~~~k~~~~~~-~el~ke~~   99 (256)
T KOG2815|consen   22 SLLPKKGGAKEPDNSKGSESEKRSL-FLKAYRGEELRKKYRDLKPLDKAPESVKSLFQLNPAIEKLDTVEK-AELSKEVK   99 (256)
T ss_pred             hhccccccccccccccccchHHHHH-hcccccHHHHhhhhhhccccccCchhhHHHHHhhhhhHHHHHHHH-HHHHHHHH
Confidence            4899999999999999999999998 999999999999999999999999999999999999999998888 99999999


Q ss_pred             cCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcCCcccCCCCCc
Q psy5134         473 RHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTIL  552 (648)
Q Consensus       473 r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~LgL~y~~pp~~~  552 (648)
                      .|..|.+|.|.++|.+|+-|+..+.|+..+..+...+..+..++++|+++|+||++.|+..|+++..+|.+.|.+|+..+
T Consensus       100 ~~~~~~~~~e~k~~k~t~a~~~d~~~~~~~~~e~~~~~r~~l~~~kr~~~lril~~~n~ss~e~~k~~lk~~~~e~~~~~  179 (256)
T KOG2815|consen  100 NHKQDNNSLEEKFAKKTAAIRRDTFELEAIIIELSGKIRIKLLIDKREKILRILRRRNLSSFEKIKIKLKLVRKEPFQRF  179 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHhcchhhhhchhhHhhcccHHHHHHHHhhhhccccHHHHHHHHHHhccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH
Q psy5134         553 NKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIE  621 (648)
Q Consensus       553 ~~~tRk~~lr~lt~~~C~~~~~~kL~~~~~~l~~~~~~f~~ek~~~l~~i~~ee~~~~~~~tvt~~~i~  621 (648)
                      +++|++.+++..+.. |...+..++.++|+++.+++..+..+-.++..+++...+++..+.++|.+.+.
T Consensus       180 e~dtgs~~vQ~~~~t-~~i~~~~r~~~~Hkkd~~~~~~l~~~~qkR~r~Lkyl~~~~~~~y~~~~~kl~  247 (256)
T KOG2815|consen  180 ESDTGSAEVQAAFPT-VEIRKLSRHEELHKKDQASVRGLRQEVQKRQRALKYLARANRQRYVRTIKKLA  247 (256)
T ss_pred             cccccchhHhHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeecccccc
Confidence            999999999999998 99999999999999999999999999999999999999999999999988776

>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function

Probab=99.75  E-value=2.1e-18  Score=139.44  Aligned_cols=53  Identities=43%  Similarity=0.874  Sum_probs=51.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHHHcCC---cEEEEcCcCCHHHHHHHHHcC
Q psy5134         182 QIICYGIGNFTDSIAAKYQFVLLLLLKIEYDC---EILIYDPIFNELELELIEIFK  234 (648)
Q Consensus       182 ~IVCLGLGSfs~s~~AryQLAlLL~L~e~l~i---~v~iyDPvFt~~D~~~L~~LG  234 (648)
                      +|||||||||+.+.+|+||||++++|++.|++   +|++|||+||+.|+++|++||
T Consensus         1 ~ivclGLGsf~~~~~a~~QLA~ll~l~~~l~~~~~~v~~yDPvft~~d~~~L~~lG   56 (56)
T PF07985_consen    1 KIVCLGLGSFSSSRSARYQLALLLLLKEELSIPRDQVSIYDPVFTEVDKAFLESLG   56 (56)
T ss_pred             CEEEEEecCccccccHHHHHHHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcC
Confidence            69999999999999999999999999999997   699999999999999999998

In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].

>KOG3131|consensus

Probab=99.66  E-value=3.6e-17  Score=164.68  Aligned_cols=73  Identities=30%  Similarity=0.481  Sum_probs=64.6

Q ss_pred             cccccccccccccccCCCeEEEccCCChhHHHHHHHhcCCcCCCCceEEEecChhhhhhccchHHHHHHhhHHHH
Q psy5134           3 LDRMTQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNLILLSNSISTVVDSNTDALCILALANVVK   77 (648)
Q Consensus         3 ~~vl~~ne~gkr~~~~~~TlfymPHC~~~LynnlL~~Nw~~~~L~~~~ligNsf~~~~~~~~~~~~~~~~~~~~~   77 (648)
                      +.||.+||.|+|.+. +||||||||||.+||+|+||+||-.|.|++++++||||++|++..+ +..-.+.++|.+
T Consensus       140 ~cvLs~~e~~~~eal-kpTLyylPHcp~~LyeNiL~snw~~Drl~k~~LcgNsfqml~~~v~-~~i~nt~p~I~k  212 (281)
T KOG3131|consen  140 GCVLSKDEAGKHEAL-KPTLYYLPHCPYALYENILWSNWKRDRLPKVFLCGNSFQMLTMTVH-YPIRNTDPHITK  212 (281)
T ss_pred             CeEeccCcccccccc-ceeeEecCCCchHHHHHHHHHhhhhccccceEEecCcHHHHHhhcc-chhccCChHHHh
Confidence            569999999999987 9999999999999999999999999999999999999999999877 444455555543

>KOG2815|consensus

Probab=99.57  E-value=1.8e-15  Score=154.39  Aligned_cols=112  Identities=21%  Similarity=0.255  Sum_probs=106.5

Q ss_pred             hhhhhHHHHHHHhcccCCCChhhHhHHHHHHHHHH-hhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHH
Q psy5134         436 ESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDS-VKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKE  514 (648)
Q Consensus       436 ~ele~a~e~VkrilSLe~as~ke~~k~~k~~~i~~-f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~  514 (648)
                      ..+....+.+-|||+.+|.++.+..++.-..+... |++++.||||++||+|.+|.+|+++..|...|+||.+++++|+.
T Consensus       140 ~l~~~kr~~~lril~~~n~ss~e~~k~~lk~~~~e~~~~~e~dtgs~~vQ~~~~t~~i~~~~r~~~~Hkkd~~~~~~l~~  219 (256)
T KOG2815|consen  140 KLLIDKREKILRILRRRNLSSFEKIKIKLKLVRKEPFQRFESDTGSAEVQAAFPTVEIRKLSRHEELHKKDQASVRGLRQ  219 (256)
T ss_pred             hhcccHHHHHHHHhhhhccccHHHHHHHHHHhccCCcccccccccchhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556789999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHcCCcccC
Q psy5134         515 LIDKRNKHLRLLRTENYKVFEWLLDELKIVFRP  547 (648)
Q Consensus       515 li~kRrKlLkYLrr~d~~~y~~li~~LgL~y~~  547 (648)
                      ++++|+++|+||++.|.++|.+++++||+++-|
T Consensus       220 ~~qkR~r~Lkyl~~~~~~~y~~~~~kl~~r~~~  252 (256)
T KOG2815|consen  220 EVQKRQRALKYLARANRQRYVRTIKKLALRDLP  252 (256)
T ss_pred             HHHHHHHHHHHHHHhCCcceeeccccccccchh
Confidence            999999999999999999999999999988764

>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain

Probab=99.41  E-value=3.3e-13  Score=104.81  Aligned_cols=46  Identities=39%  Similarity=0.462  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy5134         482 EVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLR  527 (648)
Q Consensus       482 EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLr  527 (648)
                      |||||.+|++|++|++|++.||||++++|+|..+|++|++||+||+
T Consensus         1 ~vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~ylk   46 (46)
T cd00677           1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK   46 (46)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHhC
Confidence            6999999999999999999999999999999999999999999995

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed

Probab=98.84  E-value=3.6e-09  Score=101.05  Aligned_cols=46  Identities=15%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhC
Q psy5134         485 ITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTEN  530 (648)
Q Consensus       485 IA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d  530 (648)
                      .-.||.||.+|++||+.|+||+++||+|..++++|+|||+||+++|
T Consensus        88 L~~L~~ri~~L~~HL~~nkKD~~skRgL~~~~skrrRLl~Yyk~~~  133 (151)
T PRK08561         88 LRNLIKKAVNLRKHLEENPKDLHNKRGLQLIESKIRRLVKYYKRTG  133 (151)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhcC
Confidence            6789999999999999999999999999999999999999999985

>PTZ00072 40S ribosomal protein S13; Provisional

Probab=94.29  E-value=0.076  Score=51.23  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q psy5134         485 ITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTE  529 (648)
Q Consensus       485 IA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~  529 (648)
                      .-.|-.|--++.+||+.|+||+++|++|...-++=+||-+|-+++
T Consensus        85 ly~LikKAv~iRkHLe~n~kD~~sK~~LiLiESkI~RL~rYYk~~  129 (148)
T PTZ00072         85 LYFLIKKAVSIRKHLEKNRKDKDSKFRLILVESRIHRLARYYKRT  129 (148)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence            566778888999999999999999999999999999999999776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	648
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 83/514 (16%), Positives = 157/514 (30%), Gaps = 154/514 (29%)

Query: 223 NELEL---ELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLS 279
            E +    +++ +F  +  + N +CK      K+++          ++I+ S        
Sbjct: 12  GEHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEI-----DHIIMSKDAVSGTL 65

Query: 280 NLI-LLSNSISTVVDSNTDAFLKSNLQFLFH-IKEFLEEVPVVNNFKFND----IFNDTS 333
            L   L +    +V    +  L+ N +FL   IK    + P +    + +    ++ND  
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQ 124

Query: 334 LHCFLPTKLN-SIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVG-AGLGET----N 387
           +      K N S  Q    LR       +    + +    V   +  G  G G+T    +
Sbjct: 125 VF----AKYNVSRLQPYLKLR-------QA-LLELRPAKNV---LIDGVLGSGKTWVALD 169

Query: 388 VCGYKQLI-----KIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSAD 442
           VC   ++      KI W     +   +   S + +LE   L+     L Y    +  S  
Sbjct: 170 VCLSYKVQCKMDFKIFW-----LNLKN-CNSPETVLE--MLQ----KLLYQIDPNWTSRS 217

Query: 443 EHVKKIFSCAHRGRKQAVELVK-KKHVDS--VKRHDLDDT-SREVLITKYTVSIRSLQEH 498
           +H   I    H  + +   L+K K + +   V    L +  + +                
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAW-------------- 259

Query: 499 HKAKPLDKRAKVWLKELIDKRNKHL-RLLRTENYKVFEWLLDELKIVFRPGPT--ILNKV 555
                 +   K+    L+  R K +   L           LD   +   P     +L K 
Sbjct: 260 ---NAFNLSCKI----LLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKY 310

Query: 556 --HRKESLRFLVDKH-------IGDVKTERLTQLRN--KFNQEKIN-------------- 590
              R + L   V          I +   + L    N    N +K+               
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 591 ---FYKKKAEFLE------------WT-MEQE---------------KKYGKEPTVTKEE 619
               + + + F              W  + +                +K  KE T++   
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--- 427

Query: 620 IESIWKKYEELAEKE-------LEQYEPPKHYHQ 646
           I SI+ + +   E E       ++ Y  PK +  
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 73/518 (14%), Positives = 147/518 (28%), Gaps = 158/518 (30%)

Query: 83  KSIMCMTIRTTQLTPVMLAMVMMVH-LHV-----TTSIFNSMMHVYNELNIPTSWHILKC 136
           K+   + +       V   M   +  L++       ++   +  +  +++ P        
Sbjct: 163 KT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDH 219

Query: 137 SFSIFRRIESVKEEL----GSSDYYLQLINL-------ISKSLNLSSAN-STTQGINQII 184
           S +I  RI S++ EL     S  Y   L+ L          + NLS     TT+      
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK---- 275

Query: 185 CYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIF--KLELIIQ-- 240
                  TD ++A                 I +          E+  +    L+   Q  
Sbjct: 276 -----QVTDFLSAATT------------THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 241 -NEECKHTITHAKTLVYMPRCPIQLI------NNILYSNWTRENLSNLILLSNSISTVVD 293
             E               PR  + +I          + NW   N      L+  I + ++
Sbjct: 319 PREVLTT----------NPRR-LSIIAESIRDGLATWDNWKHVNCDK---LTTIIESSLN 364

Query: 294 SNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIW-DL 352
               A  +     L  +  F     +                   PT L S+   IW D+
Sbjct: 365 VLEPAEYRKMFDRLS-V--FPPSAHI-------------------PTILLSL---IWFDV 399

Query: 353 RFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRK 412
              +         K        SL++                     K+P+    + P  
Sbjct: 400 IKSDVMVVVNKLHK-------YSLVE---------------------KQPKESTISIP-- 429

Query: 413 SGDQILELGPLELDKPTL------EYAKCESLKSADEHVKKI--FSCAHRGRKQAVELVK 464
                LEL     ++  L       Y   ++  S D     +  +  +H G         
Sbjct: 430 --SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-------- 479

Query: 465 KKHVDSVKRHDLDDTSREVLITKYTVSIRSLQE--HHKAKPLDKRAKVWLKELIDKRN-- 520
             H+ +++  +     R V      +  R L++   H +   +    + L  L   +   
Sbjct: 480 --HLKNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSI-LNTLQQLKFYK 531

Query: 521 KHLRLLRTENYKVFEWLLDEL-KIVFRPGPTILNKVHR 557
            ++     +N   +E L++ +   + +    ++   + 
Sbjct: 532 PYI----CDNDPKYERLVNAILDFLPKIEENLICSKYT 565

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	648
1a32_A	88	Ribosomal protein S15; multiwavelength anomalous d	99.97
3r8n_O	88	30S ribosomal protein S15; protein biosynthesis, R	99.97
2vqe_O	89	30S ribosomal protein S15; tRNA-binding, rRNA-bind	99.97
4a5u_B	88	30S ribosomal protein S15; transferase-RNA binding	99.97
3ulw_A	93	30S ribosomal protein S15; structural genomics, ID	99.96
3bbn_O	90	Ribosomal protein S15; small ribosomal subunit, sp	99.94
3j20_Q	158	30S ribosomal protein S15P/S13E; archaea, archaeal	99.28
3u5c_N	151	S27A, YS15, 40S ribosomal protein S13; translation	96.94
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	95.53

>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H

Probab=99.97  E-value=6.4e-31  Score=228.38  Aligned_cols=85  Identities=25%  Similarity=0.372  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134         460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD  539 (648)
Q Consensus       460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~  539 (648)
                      ++.+|+++|++|++|++||||+|||||+||+||++|++||+.||||++++|||++||++|+|||+||+++|+++|+++|+
T Consensus         3 ~~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d~~rY~~li~   82 (88)
T 1a32_A            3 TQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVE   82 (88)
T ss_dssp             CHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCc
Q psy5134         540 ELKIV  544 (648)
Q Consensus       540 ~LgL~  544 (648)
                      +|||+
T Consensus        83 ~Lglr   87 (88)
T 1a32_A           83 KLGLR   87 (88)
T ss_dssp             HHTC-
T ss_pred             HhCCC
Confidence            99997

>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...

Probab=99.97  E-value=6.1e-31  Score=228.94  Aligned_cols=85  Identities=27%  Similarity=0.346  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134         460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD  539 (648)
Q Consensus       460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~  539 (648)
                      ++++|+++|++|++|++||||+|||||+||+||++|++|++.||||++++|||++||++|+|||+||+++|+++|+++|+
T Consensus         4 ~~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d~~rY~~li~   83 (89)
T 2vqe_O            4 TKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIE   83 (89)
T ss_dssp             CHHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCc
Q psy5134         540 ELKIV  544 (648)
Q Consensus       540 ~LgL~  544 (648)
                      +|||+
T Consensus        84 ~Lglr   88 (89)
T 2vqe_O           84 KLGIR   88 (89)
T ss_dssp             HHTCC
T ss_pred             HhCCC
Confidence            99997

>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...

Probab=99.97  E-value=6.9e-31  Score=228.07  Aligned_cols=85  Identities=24%  Similarity=0.303  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134         460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD  539 (648)
Q Consensus       460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~  539 (648)
                      ++++|+++|++|++|++||||+|||||+||+||++|++||+.||||++++|||++||++|+|||+||+++|+++|.++|+
T Consensus         3 ~~~~K~~ii~~~~~~~~DTGS~EvQiA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d~~rY~~li~   82 (88)
T 4a5u_B            3 STEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIE   82 (88)
T ss_dssp             CHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCc
Q psy5134         540 ELKIV  544 (648)
Q Consensus       540 ~LgL~  544 (648)
                      +|||+
T Consensus        83 ~LglR   87 (88)
T 4a5u_B           83 RLGLR   87 (88)
T ss_dssp             HTTTT
T ss_pred             HhCCC
Confidence            99997

>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.94  E-value=2.5e-28  Score=212.46  Aligned_cols=82  Identities=22%  Similarity=0.259  Sum_probs=76.6

Q ss_pred             HHHHHHHh--hcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHc
Q psy5134         464 KKKHVDSV--KRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDEL  541 (648)
Q Consensus       464 k~~~i~~f--~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~L  541 (648)
                      +..+|..+  ++|++||||+|||||+||+||++|++|++.||||++++|||++||++|+|||+||+++|+++|.++|++|
T Consensus         3 k~~~i~~~s~~r~~~DTGS~EVQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd~~rY~~li~~L   82 (90)
T 3bbn_O            3 KNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKINGVRYKELISKL   82 (90)
T ss_dssp             HHHHHHHHHHSCCSSSSCSTTHHHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHCSHHHHTTTTTT
T ss_pred             cccchhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            34445544  6899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcc
Q psy5134         542 KIVF  545 (648)
Q Consensus       542 gL~y  545 (648)
                      ||+.
T Consensus        83 gLr~   86 (90)
T 3bbn_O           83 NIRE   86 (90)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            9997

>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.28  E-value=3.3e-12  Score=121.05  Aligned_cols=97  Identities=10%  Similarity=-0.012  Sum_probs=76.8

Q ss_pred             CCCCCCchhhhhChhhhhhHHHHHHHhcccCCCChhhHhHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhh
Q psy5134         422 PLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKA  501 (648)
Q Consensus       422 ~l~~s~~~~~y~~~~ele~a~e~VkrilSLe~as~ke~~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~  501 (648)
                      +.+||++-...+|.-    --+.||-+.+..|++.    -.+..+++++-+-.|.    ..-|+..||+||.+|++||+.
T Consensus        44 G~~pSqIG~~LRD~~----gip~Vk~vt~~~~~~~----G~ki~~iLk~~gl~p~----iPEDL~~Lt~RI~~Lt~HLk~  111 (158)
T 3j20_Q           44 GYSTAMIGTILRDQY----GIPSVKLFKDPDNPNR----NLTITRILEKHGLAPE----IPEDLMFLIRRAVNLRKHLEQ  111 (158)
T ss_dssp             TCCHHHHHHHHHHTT----CCSCHHHHHCSSSTTS----CCCTHHHHHHHTCSCS----SCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHhhHHHhccC----CCCCeeeccccccccC----cCcHHHHHHHcCCCCC----CHHHHHHHHHHHHHHHHHHHh
Confidence            566666666555552    2357889999999883    2234666666655433    344899999999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHhhC
Q psy5134         502 KPLDKRAKVWLKELIDKRNKHLRLLRTEN  530 (648)
Q Consensus       502 ~~KD~~~kr~L~~li~kRrKlLkYLrr~d  530 (648)
                      |+||++++|+|+++++||+|||+||+++|
T Consensus       112 hkKD~hSrRgL~~lv~kRrrLL~YLk~kd  140 (158)
T 3j20_Q          112 HPKDLHSMRGLQLIESKIRRLVKYYKRKG  140 (158)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998

>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O

Probab=96.94  E-value=0.001  Score=62.76  Aligned_cols=46  Identities=22%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhC
Q psy5134         485 ITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTEN  530 (648)
Q Consensus       485 IA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d  530 (648)
                      .-.|-.|.-++++||+.|+||+++||+|...-+|.+||.+|.++++
T Consensus        88 L~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~  133 (151)
T 3u5c_N           88 LYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVA  133 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5667789999999999999999999999999999999999999874

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O

Probab=95.53  E-value=0.018  Score=54.52  Aligned_cols=46  Identities=15%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhC
Q psy5134         485 ITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTEN  530 (648)
Q Consensus       485 IA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d  530 (648)
                      .-.|-.|--++.+||+.|+||+++|++|...-++=+||-+|.++++
T Consensus        90 L~~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~  135 (153)
T 2xzm_O           90 LYFLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQ  135 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            5566677788999999999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	648
d1a32a_	85	a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stea	3e-11
d1kuqa_	84	a.16.1.2 (A:) Ribosomal protein S15 {Thermus therm	5e-11
d1vs5o1	88	a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherich	2e-10

>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]} Length = 85

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 21/80 (26%), Positives = 42/80 (52%)

Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
           K++ ++  K H+ D  S EV I   T  I +L EH +    D  ++  L +++ KR + L
Sbjct: 6   KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLL 65

Query: 524 RLLRTENYKVFEWLLDELKI 543
             LR ++   +  ++++L +
Sbjct: 66  AYLRNKDVARYREIVEKLGL 85

>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]} Length = 84

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

 Score = 57.0 bits (138), Expect = 5e-11
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
           K+K +    R   D  S EV +   T+ I  L EH K    D  +   L  ++ +R + L
Sbjct: 5   KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLL 64

Query: 524 RLLRTENYKVFEWLLDELKI 543
           R L+ E+ + +  L+++L I
Sbjct: 65  RYLQREDPERYRALIEKLGI 84

>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]} Length = 88

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 20/80 (25%), Positives = 33/80 (41%)

Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
             K V    R   D  S EV +   T  I  LQ H      D  ++  L  ++ +R K L
Sbjct: 7   TAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLL 66

Query: 524 RLLRTENYKVFEWLLDELKI 543
             L+ ++   +  L++ L +
Sbjct: 67  DYLKRKDVARYTRLIERLGL 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	648
d1kuqa_	84	Ribosomal protein S15 {Thermus thermophilus [TaxId	99.96
d1a32a_	85	Ribosomal protein S15 {Bacillus stearothermophilus	99.96
d1vs5o1	88	Ribosomal protein S15 {Escherichia coli [TaxId: 56	99.96

>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1e-30  Score=223.52  Aligned_cols=83  Identities=28%  Similarity=0.362  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy5134         461 ELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDE  540 (648)
Q Consensus       461 k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~  540 (648)
                      +..|+++|++||+||.||||+|||||+||+||++|++||+.||||++++|||.+||++|+|+|+||+++|+++|.++|++
T Consensus         2 k~~K~~ii~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YLrk~d~~~Y~~li~~   81 (84)
T d1kuqa_           2 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEK   81 (84)
T ss_dssp             TTHHHHHHHHHCSSTTCCSSHHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             cHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy5134         541 LKI  543 (648)
Q Consensus       541 LgL  543 (648)
                      |||
T Consensus        82 LgL   84 (84)
T d1kuqa_          82 LGI   84 (84)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            997

>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.6e-30  Score=222.78  Aligned_cols=84  Identities=25%  Similarity=0.384  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134         460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD  539 (648)
Q Consensus       460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~  539 (648)
                      ++.+|+++|++||+||.||||+|||||+||+||++|++||+.||||++++|||.+||++|+|+|+||+++|+++|+++|+
T Consensus         2 ~~~~K~~~i~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~srrgL~~lv~~RrklL~YLrk~d~~~Y~~~i~   81 (85)
T d1a32a_           2 TQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVE   81 (85)
T ss_dssp             CHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCCCHHHHHHhhHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCC
Q psy5134         540 ELKI  543 (648)
Q Consensus       540 ~LgL  543 (648)
                      +|||
T Consensus        82 ~Lgl   85 (85)
T d1a32a_          82 KLGL   85 (85)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            9997

>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.8e-30  Score=223.60  Aligned_cols=86  Identities=23%  Similarity=0.299  Sum_probs=83.7

Q ss_pred             HhHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy5134         459 AVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLL  538 (648)
Q Consensus       459 ~~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li  538 (648)
                      +++..++++|++||+||.||||+|||||+||+||++|++||+.||||++++|||.++|++|+|+|+||+++|+++|.++|
T Consensus         2 l~~~~k~~ii~~~~~~~~DtGS~evQiA~lT~rI~~Lt~Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~d~~~Y~~vi   81 (88)
T d1vs5o1           2 LSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRLI   81 (88)
T ss_dssp             CCHHHHHHHHHHHCSSSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCc
Q psy5134         539 DELKIV  544 (648)
Q Consensus       539 ~~LgL~  544 (648)
                      ++|||+
T Consensus        82 ~~LgLr   87 (88)
T d1vs5o1          82 ERLGLR   87 (88)
T ss_dssp             TTTTCC
T ss_pred             HHhCCC
Confidence            999997