Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 120
cd01158 373
cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog
4e-28 cd00567 327
cd00567, ACAD, Acyl-CoA dehydrogenase
2e-22 pfam02770 52
pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase,
4e-21 cd01156 376
cd01156, IVD, Isovaleryl-CoA dehydrogenase
6e-20 cd01151 386
cd01151, GCD, Glutaryl-CoA dehydrogenase
1e-19 cd01161 409
cd01161, VLCAD, Very long chain acyl-CoA dehydroge
6e-18 COG1960 393
COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta
8e-18 cd01162 375
cd01162, IBD, Isobutyryl-CoA dehydrogenase
9e-17 cd01160 372
cd01160, LCAD, Long chain acyl-CoA dehydrogenase
3e-16 PTZ00461 410
PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;
1e-15 PLN02519 404
PLN02519, PLN02519, isovaleryl-CoA dehydrogenase
1e-13 cd01152 380
cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd
9e-13 cd01157 378
cd01157, MCAD, Medium chain acyl-CoA dehydrogenase
2e-12 PRK12341 381
PRK12341, PRK12341, putative acyl-CoA dehydrogenas
1e-10 PLN02526 412
PLN02526, PLN02526, acyl-coenzyme A oxidase
5e-10 cd01155 394
cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil
6e-09 TIGR03207 372
TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co
3e-08 TIGR03204 395
TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,
1e-07 PRK03354 380
PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen
4e-06 cd01153 407
cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena
7e-06 PTZ00456 622
PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis
2e-04 PLN02876 822
PLN02876, PLN02876, acyl-CoA dehydrogenase
0.002
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
Back Hide alignment and domain information
Score = 105 bits (263), Expect = 4e-28
Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 13/82 (15%)
Query: 27 YVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMW 86
Y+ + + EKI G+FALSEPG+GSDA A+KTTA KDG+ Y+LNGSKMW
Sbjct: 104 YLPPLATGEKI-------------GAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMW 150
Query: 87 ISNADIANIFLVMANVDVSKGK 108
I+N A+ ++V A D SKG
Sbjct: 151 ITNGGEADFYIVFAVTDPSKGY 172
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 88.9 bits (221), Expect = 2e-22
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
+FAL+EPG+GSD ++TTA KDG+ Y+LNG K++ISN A++F+V+A D
Sbjct: 71 AAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTD 123
Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain
Back Show alignment and domain information
Score = 79.1 bits (196), Expect = 4e-21
Identities = 26/52 (50%), Positives = 41/52 (78%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
+FAL+EPG+GSD +++TTA +DG+ ++LNG K WI+NA +A++ LV+A
Sbjct: 1 AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLARTG 52
Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Length = 52
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Score = 82.8 bits (205), Expect = 6e-20
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGK 108
G+ A+SEP +GSD +MK A K G+ Y+LNGSKMWI+N A+ +V A D S G
Sbjct: 118 GALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGA 175
Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase
Back Show alignment and domain information
Score = 82.0 bits (203), Expect = 1e-19
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 14/83 (16%)
Query: 27 YVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMW 86
Y+ K+ S E I G F L+EP GSD M+T A KDG Y LNGSK W
Sbjct: 117 YLPKLASGELI-------------GCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTW 163
Query: 87 ISNADIANIFLVMANVDVSKGKV 109
I+N+ IA++F+V A + GK+
Sbjct: 164 ITNSPIADVFVVWAR-NDETGKI 185
Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 77.5 bits (191), Expect = 6e-18
Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 15/80 (18%)
Query: 27 YVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSK 84
Y+ K+ S E I +FAL+EP SGSDA +++TTA DG HY+LNGSK
Sbjct: 129 YLPKLASGEWI-------------AAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSK 175
Query: 85 MWISNADIANIFLVMANVDV 104
+WI+N IA+IF V A +V
Sbjct: 176 IWITNGGIADIFTVFAKTEV 195
VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
Back Show alignment and domain information
Score = 77.2 bits (190), Expect = 8e-18
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 22 ETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTT-ATKDGNHYIL 80
+AP + + +EE+ + + G+FAL+EPG+GSD +++TT A +D Y+L
Sbjct: 98 GALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVL 157
Query: 81 NGSKMWISNADIANIFLVMANVDVSKGK 108
NG K+WISNA +A+ LV+A D + GK
Sbjct: 158 NGQKIWISNAPVADWLLVLARTDPAPGK 185
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase
Back Show alignment and domain information
Score = 74.0 bits (182), Expect = 9e-17
Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
S+ L+EPGSGSDA A++T A ++G+HY+LNGSK +IS A +++++VMA G+
Sbjct: 116 ASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTG---GEGP 172
Query: 111 KGLF 114
KG+
Sbjct: 173 KGIS 176
Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 72.5 bits (178), Expect = 3e-16
Identities = 30/79 (37%), Positives = 55/79 (69%)
Query: 22 ETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILN 81
+ ++PY+ + S E+ + + + + G+ A++EPG+GSD ++TTA KDG+HY+LN
Sbjct: 85 DIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLN 144
Query: 82 GSKMWISNADIANIFLVMA 100
GSK +I+N +A++ +V+A
Sbjct: 145 GSKTFITNGMLADVVIVVA 163
LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Score = 71.1 bits (174), Expect = 1e-15
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 43 KTLFESGAGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNADIANIFLVMAN 101
K L G+ +SEPG+G+D M+TTA KD N +Y+LNGSK+WI+N +A++FL+ A
Sbjct: 145 KVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAK 204
Query: 102 VDVSKGKVT 110
VD GK+T
Sbjct: 205 VD---GKIT 210
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Score = 65.3 bits (159), Expect = 1e-13
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKG 107
G+ A+SEP SGSD +MK A + Y+LNG+KMW +N +A +V A DV+ G
Sbjct: 144 GALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAAG 200
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
Back Show alignment and domain information
Score = 62.8 bits (153), Expect = 9e-13
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 56 SEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN--IFLVMANVDVSK 106
SEPG+GSD ++T A +DG+ +++NG K+W S A A+ LV + + K
Sbjct: 124 SEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEAPK 176
Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 62.2 bits (151), Expect = 2e-12
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN + ++A D
Sbjct: 117 AYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 168
MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Score = 56.7 bits (137), Expect = 1e-10
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 33 SEEKIDETVLKTLFESGAGSFAL--SEPGSGSDAFAMKTTAT-KDGNHYILNGSKMWISN 89
S E++ +T TL E+G ++AL +EPG+GSD + TT T K+G Y LNG K +I+
Sbjct: 101 SAEQLRKTAESTL-ETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVY-LNGQKTFITG 158
Query: 90 ADIANIFLVMA 100
A LV+A
Sbjct: 159 AKEYPYMLVLA 169
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase
Back Show alignment and domain information
Score = 54.9 bits (132), Expect = 5e-10
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 100
+AL+EP GSDA ++ TTATK +ILNG K WI N+ A++ ++ A
Sbjct: 144 ACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFA 193
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2
Back Show alignment and domain information
Score = 52.0 bits (125), Expect = 6e-09
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 53 FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN----IFLVMANVD 103
FA++EP + SDA ++ + +DG+ Y++NG K W S A + I +VM D
Sbjct: 129 FAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGA--GDPRCKIAIVMGRTD 182
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 49.9 bits (119), Expect = 3e-08
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 100
+ AL+EP GSDA ++ A +DG+ Y+LNG K IS AD A+ +V A
Sbjct: 117 AIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFA 165
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit
Back Show alignment and domain information
Score = 48.5 bits (115), Expect = 1e-07
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 54 ALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGK 108
SEPGSGSD ++KT A K G+ +I+NG K W + A A+ + D + K
Sbjct: 126 GFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTAKK 180
Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated
Back Show alignment and domain information
Score = 44.1 bits (104), Expect = 4e-06
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 33 SEEKIDETVLKTLFESGAG----SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWIS 88
++E+ID+ ++ G G + A++EPG+GSD ++KTT T+ LNGSK +I+
Sbjct: 102 TQEQIDK-IMAFR---GTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFIT 157
Query: 89 NADIANIFLVMA 100
++ +VMA
Sbjct: 158 SSAYTPYIVVMA 169
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5
Back Show alignment and domain information
Score = 43.1 bits (102), Expect = 7e-06
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 50 AGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNADIA---NIF-LVMA 100
G+ L+EP +GSD A++T A + + +NG K +IS + NI LV+A
Sbjct: 118 TGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLA 173
Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Score = 39.1 bits (91), Expect = 2e-04
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 33 SEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNAD 91
SEE+ ++ + K + +G+ L+EP G+D +KT A + Y + G+K++IS D
Sbjct: 165 SEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGD 224
Query: 92 ---IANI-FLVMANVDVSKGKVTKGL 113
NI +V+A + S TKGL
Sbjct: 225 HDLTENIVHIVLARLPNSL-PTTKGL 249
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 36.3 bits (84), Expect = 0.002
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 42 LKTLFESGAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA--DIANIFL 97
L L E S FA++EP + SDA ++ + + G+ Y++NG+K W S A + +
Sbjct: 542 LIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLI 601
Query: 98 VMANVDVSKGK 108
VM D + K
Sbjct: 602 VMGKTDFNAPK 612
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
120
KOG0139|consensus 398
99.94 KOG0141|consensus 421
99.94 KOG0140|consensus 408
99.93 PRK03354 380
crotonobetainyl-CoA dehydrogenase; Validated
99.92 PRK12341 381
putative acyl-CoA dehydrogenase; Provisional
99.91 cd01151 386
GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd
99.9 TIGR03203 378
pimD_small pimeloyl-CoA dehydrogenase, small subun
99.9 PLN02519 404
isovaleryl-CoA dehydrogenase
99.9 cd01156 376
IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d
99.89 TIGR03207 372
cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen
99.89 cd01157 378
MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar
99.88 cd01162 375
IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d
99.88 cd01160 372
LCAD Long chain acyl-CoA dehydrogenase. LCAD is an
99.88 TIGR03204 395
pimC_large pimeloyl-CoA dehydrogenase, large subun
99.88 PLN02526 412
acyl-coenzyme A oxidase
99.88 PTZ00461 410
isovaleryl-CoA dehydrogenase; Provisional
99.87 KOG0138|consensus 432
99.86 cd01161 409
VLCAD Very long chain acyl-CoA dehydrogenase. VLCA
99.86 cd01158 373
SCAD_SBCAD Short chain acyl-CoA dehydrogenases and
99.85 COG1960 393
CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
99.84 cd01152 380
ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases
99.82 PF02770 52
Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma
99.8 PTZ00456 622
acyl-CoA dehydrogenase; Provisional
99.79 PLN02636 686
acyl-coenzyme A oxidase
99.78 cd00567 327
ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac
99.78 cd01153 407
ACAD_fadE5 Putative acyl-CoA dehydrogenases simila
99.78 cd01155 394
ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE
99.78 cd01154 418
AidB Proteins involved in DNA damage response, sim
99.75 PRK09463 777
fadE acyl-CoA dehydrogenase; Reviewed
99.75 PLN02876 822
acyl-CoA dehydrogenase
99.74 PRK13026 774
acyl-CoA dehydrogenase; Reviewed
99.73 KOG0137|consensus 634
99.68 cd01163 377
DszC Dibenzothiophene (DBT) desulfurization enzyme
99.68 PLN02312 680
acyl-CoA oxidase
99.65 PRK11561 538
isovaleryl CoA dehydrogenase; Provisional
99.57 cd01159 370
NcnH Naphthocyclinone hydroxylase. Naphthocyclinon
99.56 PTZ00460 646
acyl-CoA dehydrogenase; Provisional
99.52 PLN02443 664
acyl-coenzyme A oxidase
99.48 cd01150 610
AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl
99.47 KOG1469|consensus 392
99.4 PTZ00457 520
acyl-CoA dehydrogenase; Provisional
99.3 KOG0135|consensus 661
98.81 PF02771 113
Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal
98.29 TIGR02309 477
HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy
98.14 KOG0136|consensus 670
98.06 PF11794 264
HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter
96.33 COG2368 493
Aromatic ring hydroxylase [Secondary metabolites b
90.92 TIGR02310 519
HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy
89.9
>KOG0139|consensus
Back Hide alignment and domain information
Probab=99.94 E-value=3.8e-26 Score=157.57 Aligned_cols=116 Identities=50% Similarity=0.767 Sum_probs=111.6
Q ss_pred CCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------
Q psy5140 4 AYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------- 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------- 49 (120)
.+++.+.++++++++|.++.+.|.+++.|+++.+|..+++.+.++|
T Consensus 36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv 115 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV 115 (398)
T ss_pred hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence 4788999999999999999999999999999999999999999998
Q ss_pred -----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCC
Q psy5140 50 -----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 94 (120)
Q Consensus 50 -----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~ 94 (120)
++++++|||++|||...+.|+|.++++.|+|||.|.||||+..|+
T Consensus 116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~ 195 (398)
T KOG0139|consen 116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEAD 195 (398)
T ss_pred eeEEEecccccchHHHHhCcHHHHhhhcchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccc
Confidence 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 95 IFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 95 ~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+++|+|..+...+..++++|+ ||+|
T Consensus 196 ~~lVfan~d~~~~~Kgit~fi-V~rd 220 (398)
T KOG0139|consen 196 WFLVFANADPSKGYKGITCFI-VPRD 220 (398)
T ss_pred eEEEEEecChhhccCceeEEE-eeCC
Confidence 999999998778899999999 9986
>KOG0141|consensus
Back Show alignment and domain information
Probab=99.94 E-value=1.7e-25 Score=152.94 Aligned_cols=116 Identities=32% Similarity=0.509 Sum_probs=108.8
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCc--cHHHHHHHhhcC-------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKI--DETVLKTLFESG------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~l~~~G------------------------------- 49 (120)
|-+++++..+|+++++|+.+++.|.+.++|+...| .+++|+.|.+.|
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~ 118 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS 118 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence 34789999999999999999999999999999999 578999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
+++++++||.+|||+.++.+.|.+.++.|+|||.|.||||+
T Consensus 119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG 198 (421)
T KOG0141|consen 119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNG 198 (421)
T ss_pred CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecC
Confidence 89999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC--CCCcceEEEEEeeC
Q psy5140 91 DIANIFLVMANVDVS--KGKVTKGLFSSIPT 119 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~--~~~~~~~~~~~V~~ 119 (120)
+.||.++|.|+++.. ++..|+++|+ |..
T Consensus 199 ~~advliVyAkTd~~a~~~~hGIt~Fi-VEk 228 (421)
T KOG0141|consen 199 PDADVLIVYAKTDHSAVPPSHGITAFI-VEK 228 (421)
T ss_pred CCCcEEEEEEecCCCCCCCcCceEEEE-EcC
Confidence 999999999999876 6678999999 974
>KOG0140|consensus
Back Show alignment and domain information
Probab=99.93 E-value=2.6e-25 Score=151.81 Aligned_cols=117 Identities=28% Similarity=0.489 Sum_probs=111.0
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC---------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG--------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G--------------------------------- 49 (120)
|.++++|.++++.+++|..+++.|...++|+.+.||.++++...++|
T Consensus 26 f~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg 105 (408)
T KOG0140|consen 26 FGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTG 105 (408)
T ss_pred cCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccchh
Confidence 78899999999999999999999999999999999999999999998
Q ss_pred ------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCC
Q psy5140 50 ------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 93 (120)
Q Consensus 50 ------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a 93 (120)
+.+.|++||++|||+.++.|+|++.++.|+|||+|.||||+++|
T Consensus 106 ~~~~I~~~~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~a 185 (408)
T KOG0140|consen 106 IQTAISIHNLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHA 185 (408)
T ss_pred HHHHHhccchhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCcc
Confidence 78899999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCC---CCCcceEEEEEeeCC
Q psy5140 94 NIFLVMANVDVS---KGKVTKGLFSSIPTG 120 (120)
Q Consensus 94 ~~~~v~a~~~~~---~~~~~~~~~~~V~~~ 120 (120)
+|++|++|++++ ++..+.++|+ |+.|
T Consensus 186 nwyfVlaRtd~~pk~p~~Kaft~fi-Ve~d 214 (408)
T KOG0140|consen 186 NWYFVLARTDPDPKTPAGKAFTAFI-VEGD 214 (408)
T ss_pred ceEEEEEecCCCCCCCCCcceEEEE-EeCC
Confidence 999999999876 5567899999 9864
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Back Show alignment and domain information
Probab=99.92 E-value=1.4e-23 Score=150.29 Aligned_cols=119 Identities=26% Similarity=0.315 Sum_probs=105.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhC-CchhhhhhhhcCccHHHHHHHhhcC------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETI-APYVQKMESEEKIDETVLKTLFESG------------------------------ 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------ 49 (120)
|+|.++++++++++.+++|+++++ .+...+.|+.+.+|.+.|+.|++.|
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999999999875 5666668888899999999999999
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+++++++||..|++...+.|++++.+|||+|||+|+|+|++.
T Consensus 81 ~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~ 160 (380)
T PRK03354 81 GAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSA 160 (380)
T ss_pred CcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCC
Confidence 678999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++.+..++..++++|+ ||++
T Consensus 161 ~ad~~~v~a~~~~~~~~~~~~~~l-v~~~ 188 (380)
T PRK03354 161 YTPYIVVMARDGASPDKPVYTEWF-VDMS 188 (380)
T ss_pred cCCEEEEEEEcCCCCCCCceeEEE-EECC
Confidence 999999999975333345678898 9964
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=7.5e-23 Score=146.58 Aligned_cols=119 Identities=27% Similarity=0.364 Sum_probs=105.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCC-chhhhhhhhcCccHHHHHHHhhcC------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIA-PYVQKMESEEKIDETVLKTLFESG------------------------------ 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~~G------------------------------ 49 (120)
|+|.+++++.++++.++.|+.+.+. +...+.|+.+.+|.++|+.|++.|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 8999999999999999999998875 466667888899999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+.+++++||.+|++...+.+++++++|||+|||+|+|+||+.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~ 160 (381)
T PRK12341 81 GAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAK 160 (381)
T ss_pred ChhHHHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCc
Confidence 578899999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCC-CCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSK-GKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~-~~~~~~~~~~V~~~ 120 (120)
.||+++|.|+.+..+ +..++++|+ ||++
T Consensus 161 ~Ad~~~v~a~~~~~~~~~~~~~~~l-V~~~ 189 (381)
T PRK12341 161 EYPYMLVLARDPQPKDPKKAFTLWW-VDSS 189 (381)
T ss_pred cCCEEEEEEEcCCCCCCCCceEEEE-EeCC
Confidence 999999999976432 235688999 9974
>cd01151 GCD Glutaryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.90 E-value=1.2e-22 Score=145.78 Aligned_cols=116 Identities=37% Similarity=0.547 Sum_probs=105.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.++++++++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~ 88 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDS 88 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhCh
Confidence 6788999999999999999999999988788888889999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+|+++..+.++|+++++||+|||+|.|+|++.
T Consensus 89 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~ 168 (386)
T cd01151 89 GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP 168 (386)
T ss_pred hHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCC
Confidence 678999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++.++. .++.+|+ ||++
T Consensus 169 ~Ad~~lv~ar~~~~---~~~~~fl-Vp~~ 193 (386)
T cd01151 169 IADVFVVWARNDET---GKIRGFI-LERG 193 (386)
T ss_pred cCCEEEEEEEECCC---CcEEEEE-EcCC
Confidence 99999999998642 4678899 9964
Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit
Back Show alignment and domain information
Probab=99.90 E-value=1.2e-22 Score=145.48 Aligned_cols=118 Identities=25% Similarity=0.323 Sum_probs=103.7
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCchhhh--hhhhcCccHHHHHHHhhcC------------------------------
Q psy5140 2 DMAYKGLGRDRLNIIAKLAKETIAPYVQK--MESEEKIDETVLKTLFESG------------------------------ 49 (120)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~l~~~G------------------------------ 49 (120)
+|.++++++++++.+++|+.+.+.+...+ .|+.+.||.++|+.|.+.|
T Consensus 1 ~~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~ 80 (378)
T TIGR03203 1 DFDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKA 80 (378)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCc
Confidence 46789999999999999999888765443 4677889999999999999
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+.+++++||.+||+...+.|++++.+++|+|||+|.||+++.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~ 160 (378)
T TIGR03203 81 LVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGE 160 (378)
T ss_pred ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCc
Confidence 788999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
.||+++|.+++++. ++..++++|+ ||++
T Consensus 161 ~Ad~~lv~ar~~~~~~~~~g~~~fl-V~~~ 189 (378)
T TIGR03203 161 TADTLIVTARTKGARRDRTGIGVFL-VPAG 189 (378)
T ss_pred cCCEEEEEEecCCCCCCCCceEEEE-EECC
Confidence 99999999998543 2446789999 9964
Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
>PLN02519 isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.90 E-value=3.6e-22 Score=144.15 Aligned_cols=118 Identities=30% Similarity=0.506 Sum_probs=105.7
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHH--HHHHHhhcC------------------------------
Q psy5140 2 DMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDET--VLKTLFESG------------------------------ 49 (120)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~l~~~G------------------------------ 49 (120)
||.+++++.++++.+++|+++++.+...+.|+.+.+|.+ +|+.|++.|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 688999999999999999999999988888888888876 699999998
Q ss_pred ----------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeC
Q psy5140 50 ----------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISN 89 (120)
Q Consensus 50 ----------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~ 89 (120)
++|++++||.+|++...+.+++++++|||+|||+|.|+++
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 6789999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+..||+++|.++.++.++..++++|+ ||++
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~l-Vp~~ 212 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFI-IEKG 212 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEE-EeCC
Confidence 99999999999986544456788999 9963
>cd01156 IVD Isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.89 E-value=1.3e-21 Score=139.82 Aligned_cols=115 Identities=32% Similarity=0.530 Sum_probs=103.4
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------- 49 (120)
++++++++++.+++|+++.+.+...+.|+.+.+|.+.|+.|++.|
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 578899999999999999999988778888889999999999998
Q ss_pred -----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCC
Q psy5140 50 -----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 94 (120)
Q Consensus 50 -----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~ 94 (120)
+++++++||.+|++...++++++++++||+|||+|.|++++..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 568999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 95 IFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 95 ~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+++|.++.++.++..++++|+ ||++
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~l-v~~~ 186 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFI-VEKG 186 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEE-EcCC
Confidence 999999976544446788999 9964
Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.89 E-value=1.1e-21 Score=140.13 Aligned_cols=115 Identities=30% Similarity=0.435 Sum_probs=103.1
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------- 49 (120)
+++++.++++.+++|+.+.+.|...+.|+.+.+|.++|+.|.+.|
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 467889999999999999999988888888899999999999998
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCE
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 95 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~ 95 (120)
+.+++++||.+|++...+.++++++++||+|||+|.|||++..||+
T Consensus 81 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~ 160 (372)
T TIGR03207 81 YVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADA 160 (372)
T ss_pred HHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCE
Confidence 7889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 96 FLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 96 ~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
++|.++.+++ ++..++.+|+ ||++
T Consensus 161 ~lv~a~~~~~~~~~~~~~~~l-Vp~~ 185 (372)
T TIGR03207 161 AVVFARTGSEAEGARGISAFL-VPMD 185 (372)
T ss_pred EEEEEEcCCCCCCCCceEEEE-EcCC
Confidence 9999997543 2345688999 9964
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.88 E-value=1.6e-21 Score=139.45 Aligned_cols=115 Identities=29% Similarity=0.501 Sum_probs=102.5
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------- 49 (120)
+++++.++++.+++|+++.+.+...+.|+.+.+|.++|+.|++.|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 467899999999999999999888888888899999999999998
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCE
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 95 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~ 95 (120)
+.+++++||..|++...+.++++++++||+|||+|.|+|++..||+
T Consensus 81 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~ 160 (378)
T cd01157 81 TAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANW 160 (378)
T ss_pred HHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCE
Confidence 6789999999999998899999999999999999999999999999
Q ss_pred EEEEEEeCCCC---CCcceEEEEEeeCC
Q psy5140 96 FLVMANVDVSK---GKVTKGLFSSIPTG 120 (120)
Q Consensus 96 ~~v~a~~~~~~---~~~~~~~~~~V~~~ 120 (120)
++|.+++++++ +..++++|+ ||++
T Consensus 161 ~lv~a~~~~~~~~~~~~~~~~~l-v~~~ 187 (378)
T cd01157 161 YFLLARSDPDPKCPASKAFTGFI-VEAD 187 (378)
T ss_pred EEEEEEeCCcccCCCCCceEEEE-EcCC
Confidence 99999975432 235688999 9964
MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
>cd01162 IBD Isobutyryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.88 E-value=2.4e-21 Score=138.58 Aligned_cols=114 Identities=33% Similarity=0.546 Sum_probs=102.5
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------- 49 (120)
++++++++++.+++|+.+++.+...+.|..+.+|.++|+.|++.|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 467889999999999999999988888888999999999999998
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCE
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 95 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~ 95 (120)
+.+++++||.+|++...+.++++++++||+|||+|+|++++..||+
T Consensus 81 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~ 160 (375)
T cd01162 81 AYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDV 160 (375)
T ss_pred HHHHHhhhHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCE
Confidence 6789999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 96 FLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 96 ~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
++|.++.++. +..++++|+ ||++
T Consensus 161 ~~v~a~~~~~-~~~~~~~~l-v~~~ 183 (375)
T cd01162 161 YVVMARTGGE-GPKGISCFV-VEKG 183 (375)
T ss_pred EEEEEEecCC-CCCceEEEE-EeCC
Confidence 9999997542 235678899 9864
Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
>cd01160 LCAD Long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.88 E-value=2.5e-21 Score=138.18 Aligned_cols=113 Identities=32% Similarity=0.567 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------------
Q psy5140 7 GLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------------- 49 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------------- 49 (120)
+++.++++.+++|+.+.+.+...+.|+++.+|.++|+.|++.|
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~ 80 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGSGPGL 80 (372)
T ss_pred ChHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcchHHHH
Confidence 4678999999999999998888888888899999999999998
Q ss_pred --------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEE
Q psy5140 50 --------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFL 97 (120)
Q Consensus 50 --------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~ 97 (120)
++|++++||.+|++...+.++++++++||+|||+|.|++++..||+++
T Consensus 81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~ 160 (372)
T cd01160 81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI 160 (372)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence 578999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 98 VMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 98 v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
|.++++++ ++..++++|+ ||++
T Consensus 161 v~a~~~~~~~~~~~~~~~l-v~~~ 183 (372)
T cd01160 161 VVARTGGEARGAGGISLFL-VERG 183 (372)
T ss_pred EEEEeCCCCCCCCceEEEE-EeCC
Confidence 99998654 2345788999 9864
LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit
Back Show alignment and domain information
Probab=99.88 E-value=3.4e-21 Score=138.78 Aligned_cols=118 Identities=24% Similarity=0.381 Sum_probs=100.4
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCchhhhh-hhhcCccH----HHHHHHhhcC---------------------------
Q psy5140 2 DMAYKGLGRDRLNIIAKLAKETIAPYVQKM-ESEEKIDE----TVLKTLFESG--------------------------- 49 (120)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~----~~~~~l~~~G--------------------------- 49 (120)
||.+++++.+|++++++|+.+++.+...+. .+...+|. ++|+.|.++|
T Consensus 1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel 80 (395)
T TIGR03204 1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL 80 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence 578999999999999999998888766542 23345553 8999999999
Q ss_pred -----------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeee
Q psy5140 50 -----------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWIS 88 (120)
Q Consensus 50 -----------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 88 (120)
+.+++++||.+||+...+.|++++.+++|+|||+|.||+
T Consensus 81 g~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt 160 (395)
T TIGR03204 81 QSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTT 160 (395)
T ss_pred HhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeec
Confidence 688999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 89 NADIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 89 ~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
++..||+++|.+++++. ++..++++|+ ||.+
T Consensus 161 ~a~~Ad~~lv~a~~~~~~~~~~g~~~fl-V~~~ 192 (395)
T TIGR03204 161 LAQHADWIFCLCRTDPTAKKQMGISFIL-VDMK 192 (395)
T ss_pred CCccCCeEEEEEEeCCCCCCCCCeEEEE-EeCC
Confidence 99999999999997532 2345789999 9864
Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
>PLN02526 acyl-coenzyme A oxidase
Back Show alignment and domain information
Probab=99.88 E-value=4e-21 Score=139.05 Aligned_cols=116 Identities=26% Similarity=0.389 Sum_probs=102.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+..+++++.++++.+++|+.+++.+...+.++...+|.++|++|.++|
T Consensus 25 ~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~~GG~G~~~~~~~~~~e~la~~~~ 104 (412)
T PLN02526 25 FDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDA 104 (412)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcccccCCCCcCHHHHHHHHHHHHhhCc
Confidence 5666889999999999999998898887776777789999999999988
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+.+++++||.+|++...+.+++++.++||+|||+|.|++++.
T Consensus 105 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~ 184 (412)
T PLN02526 105 SCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNST 184 (412)
T ss_pred hHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCC
Confidence 677899999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++.+.. .++++|+ ||++
T Consensus 185 ~Ad~~lv~a~~~~~---~~~~~fl-V~~~ 209 (412)
T PLN02526 185 FADVLVIFARNTTT---NQINGFI-VKKG 209 (412)
T ss_pred ccCEEEEEEEeCCC---CCeEEEE-EcCC
Confidence 99999999997532 4578898 9863
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=4.4e-21 Score=138.74 Aligned_cols=112 Identities=32% Similarity=0.580 Sum_probs=101.0
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC---------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG--------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G--------------------------------- 49 (120)
|.++++++++++.+++|+.+.+.+...+.|+...+|.++|+.|++.|
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 57889999999999999998999988888888899999999999998
Q ss_pred -------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeC-CEEEEEeEeeeeeCCC
Q psy5140 50 -------------------------------------AGSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNAD 91 (120)
Q Consensus 50 -------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~-~g~~l~G~k~~v~~~~ 91 (120)
+++++++||.+|++...+.|++++.+ |||+|||+|.||||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 67899999999999999999999875 5799999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++++ .++++|+ ||++
T Consensus 195 ~Ad~~lv~a~~~-----~~~~~fl-Vp~~ 217 (410)
T PTZ00461 195 VADVFLIYAKVD-----GKITAFV-VERG 217 (410)
T ss_pred cCCEEEEEEEeC-----CceEEEE-EeCC
Confidence 999999999964 3478899 9964
>KOG0138|consensus
Back Show alignment and domain information
Probab=99.86 E-value=6.3e-21 Score=130.39 Aligned_cols=112 Identities=29% Similarity=0.469 Sum_probs=101.4
Q ss_pred CCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------
Q psy5140 4 AYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------- 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------- 49 (120)
+++++...+|+++|+++++.+.|+..+..++..||.+++.+|.+.|
T Consensus 54 qLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yr 133 (432)
T KOG0138|consen 54 QLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYR 133 (432)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhch
Confidence 5678889999999999999999999999999999999999999998
Q ss_pred -----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCE--EEEEeEeeeeeCCCC
Q psy5140 50 -----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADI 92 (120)
Q Consensus 50 -----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g--~~l~G~k~~v~~~~~ 92 (120)
++||+++||.+|||+..+.|+|+.+.++ |.|||+|.||+|+..
T Consensus 134 s~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~ 213 (432)
T KOG0138|consen 134 SAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPM 213 (432)
T ss_pred hhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcc
Confidence 9999999999999999999999988777 999999999999999
Q ss_pred CCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 93 ANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 93 a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
||+++|+||...+ ..+.=|+ |.+
T Consensus 214 aDl~vvwAr~~t~---n~I~GFi-~~k 236 (432)
T KOG0138|consen 214 ADLFVVWARCETD---NKIRGFI-LEK 236 (432)
T ss_pred cceEEEEEecccC---CceeeEE-Eec
Confidence 9999999998632 3355566 654
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.86 E-value=2.7e-20 Score=134.52 Aligned_cols=117 Identities=38% Similarity=0.553 Sum_probs=100.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.+++++.++++.+++|+++.+.+. +.++.+.+|.++|+.|++.|
T Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~~~ 100 (409)
T cd01161 23 LTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGMDL 100 (409)
T ss_pred cCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhhCh
Confidence 678889999999999999999888875 35667789999999999999
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEEeEeeeeeC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISN 89 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v~~ 89 (120)
+.+++++||.+|++...+.++++++ ++||+|||+|.|+||
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~ 180 (409)
T cd01161 101 GFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITN 180 (409)
T ss_pred HHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecC
Confidence 7889999999999999999999984 457999999999999
Q ss_pred CCCCCEEEEEEEeCC--CCC--CcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDV--SKG--KVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~--~~~--~~~~~~~~~V~~~ 120 (120)
+..||+++|.++.+. .++ ..+.++|+ ||++
T Consensus 181 ~~~Ad~~lv~ar~~~~~~~g~~~~~~~~fl-vp~~ 214 (409)
T cd01161 181 GGIADIFTVFAKTEVKDATGSVKDKITAFI-VERS 214 (409)
T ss_pred CCcCCEEEEEEEcCCCCCCCCCCCceEEEE-EeCC
Confidence 999999999999752 111 25688999 9864
VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
Back Show alignment and domain information
Probab=99.85 E-value=3.1e-20 Score=132.48 Aligned_cols=113 Identities=42% Similarity=0.641 Sum_probs=100.1
Q ss_pred chHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------------
Q psy5140 7 GLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------------- 49 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------------- 49 (120)
+++.++++.+++|+.+.+.+...+.|+.+.+|.+.|+.|++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~ 80 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVI 80 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHH
Confidence 3678899999999998888888778888889999999999998
Q ss_pred ---------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEE
Q psy5140 50 ---------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIF 96 (120)
Q Consensus 50 ---------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~ 96 (120)
+++++++|+.+|++...+.++++++++||+|||+|.|++++..||++
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~ 160 (373)
T cd01158 81 VSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFY 160 (373)
T ss_pred HHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEE
Confidence 67889999999998888999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 97 LVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 97 ~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+|.++.+.+++..++++|+ ||++
T Consensus 161 lv~a~~~~~~~~~~~~~~l-vp~~ 183 (373)
T cd01158 161 IVFAVTDPSKGYRGITAFI-VERD 183 (373)
T ss_pred EEEEEcCCCCCCCceEEEE-EcCC
Confidence 9999875444446788999 9864
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Back Show alignment and domain information
Probab=99.84 E-value=6.8e-20 Score=131.69 Aligned_cols=119 Identities=35% Similarity=0.633 Sum_probs=103.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhh---hcCccHHHHHHHhhcC----------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMES---EEKIDETVLKTLFESG---------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~l~~~G---------------------------- 49 (120)
|.+.+++++.++++.+++|+++.+.+...+.++ ...+|.+.|+.+++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 1 MDFDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 566777888999999999999888877777665 6888999999999998
Q ss_pred ---------------------------------------------ceEEEeeCCCCCCCCCcce-eEEEEeCCEEEEEeE
Q psy5140 50 ---------------------------------------------AGSFALSEPGSGSDAFAMK-TTATKDGNHYILNGS 83 (120)
Q Consensus 50 ---------------------------------------------~~~~~~~e~~~g~~~~~~~-~~a~~~~~g~~l~G~ 83 (120)
++|++++||.+||+..++. |++++.+|+|+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~ 160 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQ 160 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeE
Confidence 6799999999999999987 666666666999999
Q ss_pred eeeeeCCCCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 84 KMWISNADIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 84 k~~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
|+|+||+..||+++|.|++++. ++..++++|+ ||.+
T Consensus 161 K~~is~~~~ad~~~v~Ar~~~~~~~~~gis~fl-V~~~ 197 (393)
T COG1960 161 KIWISNAPVADWLLVLARTDPAPGKHKGISLFL-VPKD 197 (393)
T ss_pred EEEEcCCCCCCEEEEEEEcCCcccccCceEEEE-EeCC
Confidence 9999999999999999999765 4567899999 9964
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
Back Show alignment and domain information
Probab=99.82 E-value=2.8e-19 Score=128.11 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHHHhhCCchhhhh-----hhhcCccHHHHHHHhhcC--------------------------------
Q psy5140 7 GLGRDRLNIIAKLAKETIAPYVQKM-----ESEEKIDETVLKTLFESG-------------------------------- 49 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~l~~~G-------------------------------- 49 (120)
+++.++++.+++|+.+++.|..... ++.+.+|.+.|+.|++.|
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 4677999999999999888766432 345678999999999998
Q ss_pred -------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCC
Q psy5140 50 -------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 92 (120)
Q Consensus 50 -------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ 92 (120)
+.+++++|+.+|++...+.++++++++||+|||+|.|+|++..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ 160 (380)
T cd01152 81 PVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY 160 (380)
T ss_pred CcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccc
Confidence 5788999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 93 ANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 93 a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
||+++|.++.+++ ++..++++|+ ||++
T Consensus 161 ad~~lv~a~~~~~~~~~~~~~~~l-Vp~~ 188 (380)
T cd01152 161 ADWAWLLVRTDPEAPKHRGISILL-VDMD 188 (380)
T ss_pred cCEEEEEEEeCCCccCcCCeEEEE-EeCC
Confidence 9999999997543 2235688999 9964
Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1
Back Show alignment and domain information
Probab=99.80 E-value=2.2e-19 Score=94.68 Aligned_cols=52 Identities=56% Similarity=0.871 Sum_probs=47.1
Q ss_pred EEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeC
Q psy5140 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103 (120)
Q Consensus 52 ~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~ 103 (120)
|++++||.+|+++..+++++++.+++|+|||+|.||+++..||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=2.2e-18 Score=129.93 Aligned_cols=110 Identities=28% Similarity=0.439 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhhCCchhhhhhhhcCc---------c---HHHHHHHhhcC---------------------------
Q psy5140 9 GRDRLNIIAKLAKETIAPYVQKMESEEKI---------D---ETVLKTLFESG--------------------------- 49 (120)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~---~~~~~~l~~~G--------------------------- 49 (120)
..++++.+++|+++.+.|...+.|+++.+ | .+.|+.+.+.|
T Consensus 60 ~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~ 139 (622)
T PTZ00456 60 MDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELM 139 (622)
T ss_pred HHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHH
Confidence 46789999999999999988777766533 5 58999999998
Q ss_pred ------------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCC-EEEEEeEeee
Q psy5140 50 ------------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMW 86 (120)
Q Consensus 50 ------------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~-g~~l~G~k~~ 86 (120)
+++++++||++||++..+.|+|+++++ +|+|||+|.|
T Consensus 140 ~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~f 219 (622)
T PTZ00456 140 ATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIF 219 (622)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEE
Confidence 678999999999999999999999876 5999999999
Q ss_pred eeCCCCC----CEEEEEEEeCCC-CCCcceEEEEEeeC
Q psy5140 87 ISNADIA----NIFLVMANVDVS-KGKVTKGLFSSIPT 119 (120)
Q Consensus 87 v~~~~~a----~~~~v~a~~~~~-~~~~~~~~~~~V~~ 119 (120)
||++.++ ++++|+||+++. ++..++++|+ ||+
T Consensus 220 It~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFl-Vp~ 256 (622)
T PTZ00456 220 ISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFL-VPR 256 (622)
T ss_pred ecCCchhhccCcEEEEEEEecCCCCCCCceEEEE-EeC
Confidence 9999873 678999998754 4567899999 996
>PLN02636 acyl-coenzyme A oxidase
Back Show alignment and domain information
Probab=99.78 E-value=2.1e-18 Score=131.14 Aligned_cols=115 Identities=24% Similarity=0.392 Sum_probs=94.0
Q ss_pred CCCchHHHHHHHHHHHHHhhC---CchhhhhhhhcCcc-HHHHHHHhhcC------------------------------
Q psy5140 4 AYKGLGRDRLNIIAKLAKETI---APYVQKMESEEKID-ETVLKTLFESG------------------------------ 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~-~~~~~~l~~~G------------------------------ 49 (120)
.+++++.++++.+++|+++.. .+....+++.+.++ .++++.+++.|
T Consensus 60 ~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~e~l~~~d~s~~~ 139 (686)
T PLN02636 60 YMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVEDPAKYFAITEAVGSVDMSLGI 139 (686)
T ss_pred hcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhhchhhHH
Confidence 356777889999999998663 55555566666777 67777766655
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeee
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWIS 88 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~ 88 (120)
++|+++||+++|||+..++|+|+++ +++|+|| |+|+||+
T Consensus 140 ~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~ 219 (686)
T PLN02636 140 KLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIG 219 (686)
T ss_pred HHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeec
Confidence 7899999999999999999999987 6889999 9999999
Q ss_pred CCCC-CCEEEEEEEeCCC------CCCcceEEEEEeeC
Q psy5140 89 NADI-ANIFLVMANVDVS------KGKVTKGLFSSIPT 119 (120)
Q Consensus 89 ~~~~-a~~~~v~a~~~~~------~~~~~~~~~~~V~~ 119 (120)
|++. ||+++|+|++... ++..|+++|+ ||.
T Consensus 220 na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~Fl-Vp~ 256 (686)
T PLN02636 220 NAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFI-VPI 256 (686)
T ss_pred CCcccCCEEEEEEEecCCCCCccCCCCCCeeEEE-Eec
Confidence 9976 9999999998621 1256899999 985
>cd00567 ACAD Acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.78 E-value=1.6e-17 Score=116.50 Aligned_cols=113 Identities=35% Similarity=0.544 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhc-C-------------------------ceEEEeeCCCC
Q psy5140 7 GLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFES-G-------------------------AGSFALSEPGS 60 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~-G-------------------------~~~~~~~e~~~ 60 (120)
+++.++++.+++|+.+++.+.....++....+.+.++.++.. . +++++++|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~ 80 (327)
T cd00567 1 EEQRELRDSAREFAAEELEPYARERRETPEEPWELLAELGLLLGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGA 80 (327)
T ss_pred ChHHHHHHHHHHHHHHhccccHHhHHhhCCCCHHHHHHHHHHhchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCC
Confidence 357789999999999998888777666666676666666652 1 78999999999
Q ss_pred CCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCC-CCcceEEEEEeeCC
Q psy5140 61 GSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSK-GKVTKGLFSSIPTG 120 (120)
Q Consensus 61 g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~-~~~~~~~~~~V~~~ 120 (120)
|++...+.+++++.++||+|||+|+|++++..||+++|.++.+..+ +..+..+|+ ||++
T Consensus 81 gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~~~l-vp~~ 140 (327)
T cd00567 81 GSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISAFL-VPAD 140 (327)
T ss_pred CCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeCCCCCCCCceEEEE-EeCC
Confidence 9999999999999999999999999999999999999999986432 345688899 9964
Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5
Back Show alignment and domain information
Probab=99.78 E-value=5.7e-18 Score=122.47 Aligned_cols=107 Identities=30% Similarity=0.471 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhCCchhhhhhhhcC--------cc---HHHHHHHhhcC--------------------------------
Q psy5140 13 LNIIAKLAKETIAPYVQKMESEEK--------ID---ETVLKTLFESG-------------------------------- 49 (120)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~d~~~~--------~~---~~~~~~l~~~G-------------------------------- 49 (120)
++.+++|+.+.+.|.+.+.|++.. || .++|++|++.|
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 678999999889988877776653 88 67899999998
Q ss_pred ------------------------------------ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCC
Q psy5140 50 ------------------------------------AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADI 92 (120)
Q Consensus 50 ------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~ 92 (120)
+.|+++|||.+||+...+.++++++ +|||+|||+|.|+|++..
T Consensus 82 s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~ 161 (407)
T cd01153 82 PLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEH 161 (407)
T ss_pred HHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCc
Confidence 7899999999999999999999998 578999999999999988
Q ss_pred C----CEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 93 A----NIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 93 a----~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
| ++++|.+++++. ++..++++|+ ||++
T Consensus 162 a~~~~~~~~v~a~~~~~~~~~~~~~~fl-Vp~~ 193 (407)
T cd01153 162 DMSENIVHLVLARSEGAPPGVKGLSLFL-VPKF 193 (407)
T ss_pred ccccccEEEEEEeCCCCCCCCCceEEEE-Eecc
Confidence 6 588899987542 2345788999 9964
Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2
Back Show alignment and domain information
Probab=99.78 E-value=1.3e-17 Score=120.08 Aligned_cols=111 Identities=24% Similarity=0.415 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhCCchhhhhhhh-----------cCccHHHHHHHhhcC----------------------------
Q psy5140 9 GRDRLNIIAKLAKETIAPYVQKMESE-----------EKIDETVLKTLFESG---------------------------- 49 (120)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~d~~-----------~~~~~~~~~~l~~~G---------------------------- 49 (120)
.+++++.+|+|+++++.|...+.|+. ..+++++|+.++++|
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 56799999999999999877666542 223468999999998
Q ss_pred -------------------------------------------ceEEEeeCCC-CCCCCCcceeEEEEeCCEEEEEeEee
Q psy5140 50 -------------------------------------------AGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKM 85 (120)
Q Consensus 50 -------------------------------------------~~~~~~~e~~-~g~~~~~~~~~a~~~~~g~~l~G~k~ 85 (120)
+++++++||. .|++...+.++++++++||+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 6789999997 67888889999999999999999999
Q ss_pred eeeCCCC--CCEEEEEEEeCCC--CCCcceEEEEEeeCC
Q psy5140 86 WISNADI--ANIFLVMANVDVS--KGKVTKGLFSSIPTG 120 (120)
Q Consensus 86 ~v~~~~~--a~~~~v~a~~~~~--~~~~~~~~~~~V~~~ 120 (120)
|+|++.+ +++++|.++++.+ ++..++++|+ ||++
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~fl-Vp~~ 200 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMIL-VPMD 200 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEE-EeCC
Confidence 9999955 8899999987543 2235788999 9974
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product
Back Show alignment and domain information
Probab=99.75 E-value=2e-17 Score=120.08 Aligned_cols=69 Identities=35% Similarity=0.433 Sum_probs=62.5
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
++|+++|||++|||+.++.|+|+++ +++|+|||+|+|+|++ .||+++|+|++++. ++..++++|+ ||++
T Consensus 148 ~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~~~~~gls~fl-Vp~~ 218 (418)
T cd01154 148 LGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLARPEGAPAGARGLSLFL-VPRL 218 (418)
T ss_pred hheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEECCCCCCCCCcEEEEE-Eecc
Confidence 5789999999999999999999999 8899999999999999 99999999998754 4457899999 9963
AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.75 E-value=5.5e-17 Score=124.34 Aligned_cols=113 Identities=24% Similarity=0.254 Sum_probs=87.5
Q ss_pred CCchHHHHHHH-HHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------
Q psy5140 5 YKGLGRDRLNI-IAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------- 49 (120)
++++++.+++. +++|++. .. .....++.+.+|.++|+.|++.|
T Consensus 79 Ls~ee~~~~d~~v~~l~~~-~~-~~~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~ 156 (777)
T PRK09463 79 LTAEEQAFLDGPVEELCRM-VN-DWQITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTL 156 (777)
T ss_pred CCHHHHHHHHHHHHHHHHH-HH-HHHHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcch
Confidence 67888888886 7777652 21 11222334789999999999998
Q ss_pred -------------------------------------ceEEEeeCCCCCCCCCcceeEE-----EEeCC---EEEEEeEe
Q psy5140 50 -------------------------------------AGSFALSEPGSGSDAFAMKTTA-----TKDGN---HYILNGSK 84 (120)
Q Consensus 50 -------------------------------------~~~~~~~e~~~g~~~~~~~~~a-----~~~~~---g~~l~G~k 84 (120)
++|++++||.+|||...+.+++ .++++ ||+|||+|
T Consensus 157 a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K 236 (777)
T PRK09463 157 AVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNK 236 (777)
T ss_pred hHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEE
Confidence 8899999999999998887654 34444 69999999
Q ss_pred eeeeCCCCCCEEEEEEEe-CCC-----CCCcceEEEEEeeCC
Q psy5140 85 MWISNADIANIFLVMANV-DVS-----KGKVTKGLFSSIPTG 120 (120)
Q Consensus 85 ~~v~~~~~a~~~~v~a~~-~~~-----~~~~~~~~~~~V~~~ 120 (120)
.|||++..||+++|.+++ +++ ++..++++|+ ||++
T Consensus 237 ~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fL-Vp~d 277 (777)
T PRK09463 237 RYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCAL-IPTD 277 (777)
T ss_pred EeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEE-EECC
Confidence 999999999999999986 321 2346799999 9964
>PLN02876 acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.74 E-value=9.6e-17 Score=124.57 Aligned_cols=70 Identities=26% Similarity=0.556 Sum_probs=59.9
Q ss_pred ceEEEeeCCC-CCCCCCcceeEEEEeCCEEEEEeEeeeeeCC--CCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA--DIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~--~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
++|++++||+ +||+..++.|+++++++||+|||+|+|+|++ ..||+++|.++++++ ++..++++|+ ||.+
T Consensus 551 ~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~fl-V~~~ 624 (822)
T PLN02876 551 RSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMIL-VDIQ 624 (822)
T ss_pred eeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEE-EeCC
Confidence 6799999997 7889999999999999999999999999999 469999999997533 2345688999 9864
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.73 E-value=1.2e-16 Score=122.26 Aligned_cols=70 Identities=30% Similarity=0.342 Sum_probs=57.4
Q ss_pred ceEEEeeCCCCCCCCCcceeEEE-----EeCC---EEEEEeEeeeeeCCCCCCEEEEEEEe-CCC-----CCCcceEEEE
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTAT-----KDGN---HYILNGSKMWISNADIANIFLVMANV-DVS-----KGKVTKGLFS 115 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~-----~~~~---g~~l~G~k~~v~~~~~a~~~~v~a~~-~~~-----~~~~~~~~~~ 115 (120)
++|++++||.+|||..++.++++ ++++ ||+|||+|.|||++..||+++|.++. +++ ++..++++|+
T Consensus 193 i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fL 272 (774)
T PRK13026 193 IPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCAL 272 (774)
T ss_pred EEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEE
Confidence 89999999999999988886654 4555 69999999999999999999888764 322 2346899999
Q ss_pred EeeCC
Q psy5140 116 SIPTG 120 (120)
Q Consensus 116 ~V~~~ 120 (120)
||++
T Consensus 273 -Vp~d 276 (774)
T PRK13026 273 -IPTD 276 (774)
T ss_pred -EECC
Confidence 9974
>KOG0137|consensus
Back Show alignment and domain information
Probab=99.68 E-value=8.4e-16 Score=112.57 Aligned_cols=70 Identities=49% Similarity=0.745 Sum_probs=61.2
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC--C--CCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISNADIANIFLVMANVDVS--K--GKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~--~--~~~~~~~~~~V~~~ 120 (120)
+.+++++||..|||.....|+++.. ++.|+|||.|.||+|++.||+++|+|++..+ + ..+++++|+ |+++
T Consensus 193 ~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Fl-ver~ 268 (634)
T KOG0137|consen 193 IAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFL-VERD 268 (634)
T ss_pred cceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEE-Eecc
Confidence 8999999999999999999999865 4559999999999999999999999999733 2 246799999 9875
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C
Back Show alignment and domain information
Probab=99.68 E-value=8.6e-16 Score=110.01 Aligned_cols=98 Identities=26% Similarity=0.253 Sum_probs=81.0
Q ss_pred HHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------------------
Q psy5140 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------------------- 49 (120)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------------------- 49 (120)
++.+.+ .+.+...+.|+.+.+|.+.|+.|++.|
T Consensus 3 ~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~ 81 (377)
T cd01163 3 ARPLAA-RIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVE 81 (377)
T ss_pred HHHHHH-HHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 556665 577778888999999999999999998
Q ss_pred ----------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCC
Q psy5140 50 ----------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKG 107 (120)
Q Consensus 50 ----------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~ 107 (120)
+.+.+++|+++++ ...+.+++.++++||+|||+|.|+|++..||+++|.+++++
T Consensus 82 ~l~~~g~~~~~~~~l~~~~~g~~~~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~--- 157 (377)
T cd01163 82 ALLLAGPEQFRKRWFGRVLNGWIFGNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE--- 157 (377)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCeEEEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC---
Confidence 5667899998765 55666777788899999999999999999999999998642
Q ss_pred CcceEEEEEeeCC
Q psy5140 108 KVTKGLFSSIPTG 120 (120)
Q Consensus 108 ~~~~~~~~~V~~~ 120 (120)
.++.+|+ ||.+
T Consensus 158 -~~~~~~l-V~~~ 168 (377)
T cd01163 158 -GKLVFAA-VPTD 168 (377)
T ss_pred -CcEEEEE-EeCC
Confidence 3467888 9864
DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
>PLN02312 acyl-CoA oxidase
Back Show alignment and domain information
Probab=99.65 E-value=1.3e-15 Score=115.97 Aligned_cols=68 Identities=26% Similarity=0.481 Sum_probs=61.5
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeCC-CCCCEEEEEEEeCCCCCCcceEEEEEee
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVDVSKGKVTKGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~~-~~a~~~~v~a~~~~~~~~~~~~~~~~V~ 118 (120)
++|+++||+++|||+.+++|+|+++ +++|+|| |+|+|++|+ ..|++++|+|++...++..|+++|+ ||
T Consensus 186 ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~Fl-V~ 261 (680)
T PLN02312 186 KGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFI-AQ 261 (680)
T ss_pred eeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEE-Ee
Confidence 8999999999999999999999987 4779999 799999999 6899999999987544567899999 98
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.57 E-value=1.4e-14 Score=107.80 Aligned_cols=64 Identities=25% Similarity=0.314 Sum_probs=57.8
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
++++++|||++|||+..++|+|++. +|+|+|||+|+|+| +..||+++|.|+++ .|+++|+ ||++
T Consensus 179 ~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-----~Gls~Fl-Vp~~ 243 (538)
T PRK11561 179 LIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-----GGLSCFF-VPRF 243 (538)
T ss_pred eeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-----CceEEEE-EECC
Confidence 4689999999999999999999994 67799999999999 68899999999985 4799999 9974
>cd01159 NcnH Naphthocyclinone hydroxylase
Back Show alignment and domain information
Probab=99.56 E-value=6.4e-15 Score=105.34 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=76.4
Q ss_pred HHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------------------
Q psy5140 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------------------- 49 (120)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------------------- 49 (120)
++.+.+ .+++.+.+.|+++.+|.+.|+.|++.|
T Consensus 3 ~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~ 81 (370)
T cd01159 3 AEDLAP-LIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSR 81 (370)
T ss_pred HHHHHH-HHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 445555 577888889999999999999999998
Q ss_pred -c--e------EEEeeCCC-CCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 50 -A--G------SFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 50 -~--~------~~~~~e~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
+ . .....++. ..++...+.++|+++++||+|||+|.|||++..+|+++|.+++++.++..++++|+ ||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~~~l-V~~ 160 (370)
T cd01159 82 MLAAFPPEAQEEVWGDGPDTLLAGSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFV-VPR 160 (370)
T ss_pred HHHhCCHHHHHHHhCCCCCceEEeeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcceEEE-EEh
Confidence 0 0 00012221 11122346678889999999999999999999999999999976443456789999 996
Q ss_pred C
Q psy5140 120 G 120 (120)
Q Consensus 120 ~ 120 (120)
+
T Consensus 161 ~ 161 (370)
T cd01159 161 A 161 (370)
T ss_pred H
Confidence 3
Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.52 E-value=7.6e-14 Score=105.89 Aligned_cols=68 Identities=31% Similarity=0.463 Sum_probs=61.0
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeC-CCCCCEEEEEEEeCCCCCCcceEEEEEee
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISN-ADIANIFLVMANVDVSKGKVTKGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~~~V~ 118 (120)
++|++++||++|||+.+++|+|+.+ +++|+|| |+|+|++| +..|++++|+|++...++..|+++|+ ||
T Consensus 128 ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~Fl-V~ 203 (646)
T PTZ00460 128 VGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFM-VR 203 (646)
T ss_pred heeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEE-Ee
Confidence 8999999999999999999999974 6789998 99999998 57899999999986544557899999 98
>PLN02443 acyl-coenzyme A oxidase
Back Show alignment and domain information
Probab=99.48 E-value=2.9e-13 Score=103.00 Aligned_cols=69 Identities=25% Similarity=0.370 Sum_probs=61.6
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeCC-CCCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~~-~~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
++|++++|+++|||+..++|+|+.+ +++|+|| |+|+|++|+ ..|++++|+|+....++..|+++|+ ||.
T Consensus 132 ig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~Fl-Vp~ 208 (664)
T PLN02443 132 IGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFI-VQL 208 (664)
T ss_pred heEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEE-Eec
Confidence 8999999999999999999999987 6789998 999999997 5799999999986544557899999 994
>cd01150 AXO Peroxisomal acyl-CoA oxidase
Back Show alignment and domain information
Probab=99.47 E-value=2.7e-13 Score=102.56 Aligned_cols=69 Identities=30% Similarity=0.441 Sum_probs=61.8
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEeC--CEEEEE-----eEeeeeeCCCC-CCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKDG--NHYILN-----GSKMWISNADI-ANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~~--~g~~l~-----G~k~~v~~~~~-a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
++|++++|+++|||+..++|+|+.++ ++|+|| |+|+|++|++. |++++|+|+....++..|+++|+ ||.
T Consensus 135 ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~Fl-Vp~ 211 (610)
T cd01150 135 IGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFI-VPI 211 (610)
T ss_pred heeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEE-Eec
Confidence 89999999999999999999999887 889999 99999999865 99999999986444457899999 993
Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
>KOG1469|consensus
Back Show alignment and domain information
Probab=99.40 E-value=1.3e-12 Score=88.86 Aligned_cols=70 Identities=30% Similarity=0.600 Sum_probs=62.5
Q ss_pred ceEEEeeCCC-CCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCC--CCEEEEEEEeCCC--CCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADI--ANIFLVMANVDVS--KGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~a~~~~~--~~~~~~~~~~~V~~~ 120 (120)
..||+++||+ +.||..+++++.+++++.|+|||+|||+||+.+ |.+.+++.+++.. +.+..+++++ ||.+
T Consensus 114 rScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiL-VpM~ 188 (392)
T KOG1469|consen 114 RSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMIL-VPMN 188 (392)
T ss_pred eeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEE-EecC
Confidence 7999999999 888999999999999999999999999999965 8999999999865 3456789999 9964
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.30 E-value=2.1e-11 Score=90.61 Aligned_cols=68 Identities=29% Similarity=0.346 Sum_probs=56.5
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC----CC---CcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVS----KG---KVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~----~~---~~~~~~~~~V~~~ 120 (120)
+.+++++| .+|||+..+.|++++. +|+|+|||+|.|+ ++..||+++|+|++++. .+ ..++++|+ ||++
T Consensus 135 i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~Fl-V~~d 210 (520)
T PTZ00457 135 MMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFI-CAKD 210 (520)
T ss_pred EEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEE-EECC
Confidence 78999988 8999999999999986 5579999999965 89999999999997531 11 24689999 9964
>KOG0135|consensus
Back Show alignment and domain information
Probab=98.81 E-value=1e-08 Score=75.66 Aligned_cols=68 Identities=35% Similarity=0.503 Sum_probs=59.9
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeCCCC-CCEEEEEEEeCCCCCCcceEEEEEee
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNADI-ANIFLVMANVDVSKGKVTKGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~~~~-a~~~~v~a~~~~~~~~~~~~~~~~V~ 118 (120)
.+||+++|.+|||+...++|||+-+ .+.|+|| ..|+||.|++. |++.+|+|+....+...|+.-|+ ||
T Consensus 157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~Fi-iq 232 (661)
T KOG0135|consen 157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFI-IQ 232 (661)
T ss_pred eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEE-EE
Confidence 8999999999999999999999854 6779996 78999999965 99999999986555567889999 87
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1
Back Show alignment and domain information
Probab=98.29 E-value=3.1e-07 Score=55.08 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcCceEEEeeCCCCCCC
Q psy5140 6 KGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSD 63 (120)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~~e~~~g~~ 63 (120)
|+++++|++.+++|+++++.|...+.|+++.+|.++|+.|++.|+....+.+.-+|.+
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~ 58 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLG 58 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcc
Confidence 5788999999999999999999999988889999999999999988877776656544
3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
Back Show alignment and domain information
Probab=98.14 E-value=2.7e-06 Score=63.19 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=47.3
Q ss_pred ceEEEeeCCCCCCCC-----Ccce--eEE-EEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCC-cc--eEEEEEee
Q psy5140 50 AGSFALSEPGSGSDA-----FAMK--TTA-TKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGK-VT--KGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~-----~~~~--~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~-~~--~~~~~~V~ 118 (120)
..+-+++.|...-.. ..+. ... .++++||+|||.|.|+|++ .||.++|++++...++. .+ .++|+ ||
T Consensus 142 ~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~~~~~~ya~~F~-VP 219 (477)
T TIGR02309 142 ALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAGAEKDPYALAFA-IP 219 (477)
T ss_pred eeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCccCCCCeEEEEE-ee
Confidence 566677777522121 1122 233 4678999999999999997 99999999987653222 23 68888 99
Q ss_pred CC
Q psy5140 119 TG 120 (120)
Q Consensus 119 ~~ 120 (120)
.|
T Consensus 220 ~d 221 (477)
T TIGR02309 220 TN 221 (477)
T ss_pred CC
Confidence 75
This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
>KOG0136|consensus
Back Show alignment and domain information
Probab=98.06 E-value=9.6e-06 Score=61.27 Aligned_cols=78 Identities=24% Similarity=0.301 Sum_probs=62.9
Q ss_pred HHHHHHhhcC----ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEE-----EeEeeeeeCCCC-CCEEEEEEEeCCCCC
Q psy5140 40 TVLKTLFESG----AGSFALSEPGSGSDAFAMKTTATKD--GNHYIL-----NGSKMWISNADI-ANIFLVMANVDVSKG 107 (120)
Q Consensus 40 ~~~~~l~~~G----~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l-----~G~k~~v~~~~~-a~~~~v~a~~~~~~~ 107 (120)
+.-++|...+ ++|.+-+|.+||++++.++|+|+-+ -+.|+| +..|||..+-+. |++.+|.|+....+.
T Consensus 130 Q~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk 209 (670)
T KOG0136|consen 130 QQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGK 209 (670)
T ss_pred HHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchheeeeeeeeccc
Confidence 3444444444 8999999999999999999999844 456887 589999888765 899999999976666
Q ss_pred CcceEEEEEee
Q psy5140 108 KVTKGLFSSIP 118 (120)
Q Consensus 108 ~~~~~~~~~V~ 118 (120)
..|+..|+ ||
T Consensus 210 ~~G~h~Fi-V~ 219 (670)
T KOG0136|consen 210 CYGPHPFI-VQ 219 (670)
T ss_pred ccccceeE-EE
Confidence 78889999 98
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []
Back Show alignment and domain information
Probab=96.33 E-value=0.11 Score=36.16 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=44.8
Q ss_pred HHHHhhcC-ceEEEeeCCCCCCCCCc------ceeEE-EEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCcc-eE
Q psy5140 42 LKTLFESG-AGSFALSEPGSGSDAFA------MKTTA-TKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT-KG 112 (120)
Q Consensus 42 ~~~l~~~G-~~~~~~~e~~~g~~~~~------~~~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~-~~ 112 (120)
++.+.+.. ..+.++..|...-.... +.... .+.++|.+|+|-|...|+++.+|.++|+-...-.++.+. -.
T Consensus 129 ~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d~dyAv 208 (264)
T PF11794_consen 129 YEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGDEDYAV 208 (264)
T ss_dssp HHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCCGGG-E
T ss_pred HHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCCCceEE
Confidence 34444444 67788888862211111 23333 367899999999999999999999999865442222233 45
Q ss_pred EEEEeeCC
Q psy5140 113 LFSSIPTG 120 (120)
Q Consensus 113 ~~~~V~~~ 120 (120)
.|. ||.+
T Consensus 209 ~Fa-vP~~ 215 (264)
T PF11794_consen 209 AFA-VPMN 215 (264)
T ss_dssp EEE-EETT
T ss_pred EEE-ccCC
Confidence 566 8864
The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=90.92 E-value=0.51 Score=35.49 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=49.1
Q ss_pred ccHHHHHHHhh---cC-ceEEEeeCCCCCCCC-----C--cceeEE-EEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCC
Q psy5140 37 IDETVLKTLFE---SG-AGSFALSEPGSGSDA-----F--AMKTTA-TKDGNHYILNGSKMWISNADIANIFLVMANVDV 104 (120)
Q Consensus 37 ~~~~~~~~l~~---~G-~~~~~~~e~~~g~~~-----~--~~~~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~ 104 (120)
|.....+.+++ .+ ..+-+++.|...-+- . .+.... .++++|.+++|-|..+|+++.+|..+|+-...-
T Consensus 129 y~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~ 208 (493)
T COG2368 129 YHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSM 208 (493)
T ss_pred HHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeecccc
Confidence 44444444443 34 456667776522111 1 122233 367899999999999999999999999833322
Q ss_pred CCC-CcceEEEEEeeCC
Q psy5140 105 SKG-KVTKGLFSSIPTG 120 (120)
Q Consensus 105 ~~~-~~~~~~~~~V~~~ 120 (120)
..+ .+=-..|. ||.|
T Consensus 209 ~~~d~dfAv~Fa-iP~d 224 (493)
T COG2368 209 QEDDKDFAVAFA-IPMD 224 (493)
T ss_pred CCCCCceEEEEE-cccC
Confidence 212 22245566 8864
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
Back Show alignment and domain information
Probab=89.90 E-value=0.43 Score=36.39 Aligned_cols=70 Identities=10% Similarity=0.170 Sum_probs=42.4
Q ss_pred ceEEEeeCCCCCCCCC-----cceeEE-EEeCCEEEEEeEeeeeeCCCCCCEEEE-EEEeCCCCCCcce-EEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAF-----AMKTTA-TKDGNHYILNGSKMWISNADIANIFLV-MANVDVSKGKVTK-GLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~-----~~~~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v-~a~~~~~~~~~~~-~~~~~V~~~ 120 (120)
..+-++..|...-+.. .+-... .++++|.+|+|-|...|+++.+|.++| +....-.++.... ..|. ||.|
T Consensus 151 ~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d~dyAvaFa-vP~d 228 (519)
T TIGR02310 151 YFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDNDDFALMFI-APMD 228 (519)
T ss_pred eeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCCCCeEEEEE-eEcC
Confidence 5666777765221111 122233 367899999999999999999999998 4433111112333 4455 8864
This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 120
d1ivha2 236
e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM
4e-17 d3mdea2 231
e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge
4e-15 d1rx0a2 231
e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H
9e-15 d1ukwa2 227
e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge
4e-09 d2d29a2 233
e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
1e-08 d1u8va2 275
e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase
4e-08 d1jqia2 231
e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do
4e-07 d1buca2 232
e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do
1e-06 d1w07a3 271
e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai
0.002
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236
Back Hide information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.7 bits (175), Expect = 4e-17
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G+ A+SEP +GSD +MK A K GNHYILNG+K WI+N A++ +V A D++ +
Sbjct: 126 GALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPAS 185
Query: 111 KG 112
+G
Sbjct: 186 RG 187
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]
Score = 66.5 bits (161), Expect = 4e-15
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIF 96
++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN +
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWY 166
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (159), Expect = 9e-15
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 25 APYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSK 84
A + +EE+ + S+ L+EPGSGSDA ++ T+A K G+HYILNGSK
Sbjct: 99 AWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSK 158
Query: 85 MWISNADIANIFLVMANVDVSKGK 108
+IS A ++I++VM K
Sbjct: 159 AFISGAGESDIYVVMCRTGGPGPK 182
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]
Score = 50.0 bits (118), Expect = 4e-09
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 26 PYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKM 85
V +EE+ + + + +FALSEPG+GSDA A+KT A + G+HY+LNG+KM
Sbjct: 95 TPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKM 154
Query: 86 WISNADIANIFLVMANVDVSKGKVTKGLF 114
WISN A +V A V+
Sbjct: 155 WISNGGEAEWVVVFATVNPELRHKGVVAL 183
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]
Score = 48.9 bits (115), Expect = 1e-08
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G++ L+EPGSGSDA A+KT A K + LNG+K +I+ +A +++VMA D
Sbjct: 122 GAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPER 181
Query: 111 K 111
K
Sbjct: 182 K 182
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]
Score = 47.3 bits (112), Expect = 4e-08
Identities = 7/78 (8%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 51 GSFALSEPGSGSD--------AFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANV 102
A+++P K + ++ G+K + + ++ ++M +
Sbjct: 145 VDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTI 204
Query: 103 DVSKGKVTKGLFSSIPTG 120
+++ + + P+
Sbjct: 205 AMTEADKDYAVSFACPSD 222
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.6 bits (104), Expect = 4e-07
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 26 PYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKM 85
+ K S ++ + + G FALSEPG+GSDA A TTA ++G+ ++LNG+K
Sbjct: 98 GPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKA 157
Query: 86 WISNADIANIFLVMANVD 103
WI+N+ A+ +V A+ D
Sbjct: 158 WITNSWEASATVVFASTD 175
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]
Score = 43.1 bits (100), Expect = 1e-06
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNADIANIFLVMANVDVSKGKV 109
G+F L+EP +G+DA +T ATK+ + Y LNGSK++I+N A+I++V A D SKG
Sbjct: 124 GAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNH 183
Query: 110 TKGLF 114
F
Sbjct: 184 GITAF 188
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 33.9 bits (77), Expect = 0.002
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 25 APYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKD--GNHYILN- 81
P ++ +EE+ + + G +A +E G GS+ ++TTAT D + ++++
Sbjct: 106 VPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHT 165
Query: 82 ----GSKMWISNADIANIFLVMANVDVSKGK 108
SK W + V+ ++ GK
Sbjct: 166 PTQTASKWWPGGLGKVSTHAVVYARLITNGK 196
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 120
d1ukwa2 227
Medium chain acyl-CoA dehydrogenase, NM domains {T
99.97 d3mdea2 231
Medium chain acyl-CoA dehydrogenase, NM domains {P
99.97 d1buca2 232
Butyryl-CoA dehydrogenase, NM domains {Megasphaera
99.97 d1jqia2 231
Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus
99.96 d2d29a2 233
Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI
99.96 d1siqa2 236
Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie
99.95 d1rx0a2 231
Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)
99.95 d1ivha2 236
Isovaleryl-coa dehydrogenase, NM domains {Human (H
99.94 d2c12a2 259
Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55
99.93 d1r2ja2 210
Protein FkbI {Streptomyces hygroscopicus [TaxId: 1
99.88 d2ddha3 267
Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {
99.68 d1w07a3 271
Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale
99.63 d1u8va2 275
4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
99.34
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}
Back Hide information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=3.5e-31 Score=175.14 Aligned_cols=119 Identities=38% Similarity=0.596 Sum_probs=112.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|||.+|++++++++.+|+|+++++.|.+.++|+.+.+|.++|+.|+++|
T Consensus 1 Mdf~Lteeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~ 80 (227)
T d1ukwa2 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC 80 (227)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHhhhhhhhccccccCcccccccccccchhhhcccc
Confidence 9999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+|++...++|+|+++++||+|||+|+|||++.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~ 160 (227)
T d1ukwa2 81 MGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGG 160 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred ccccccccccccchhhhhccCCHHHHHHhccccccccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEeccCccc
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.|+++...+..++++|+ ||++
T Consensus 161 ~Ad~~~v~a~~~~~~~~~g~~~f~-V~~~ 188 (227)
T d1ukwa2 161 EAEWVVVFATVNPELRHKGVVALV-VERG 188 (227)
T ss_dssp TEEEEEEEEESCGGGGGGGEEEEE-EETT
T ss_pred cchhhccccccCCccCcCCcEEEE-EeCC
Confidence 999999999987655567899999 9975
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=7e-31 Score=173.75 Aligned_cols=119 Identities=29% Similarity=0.495 Sum_probs=111.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|||.+|++++++++.+|+|+++++.|.+.++|+++.+|.++|+.|++.|
T Consensus 2 mdf~lseeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~ 81 (231)
T d3mdea2 2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGC 81 (231)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcccc
Confidence 9999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|+++|||.+|||+.+++|+|+++++||+|||+|+||||+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~~ 161 (231)
T d3mdea2 82 TGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 161 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred cccccccccccccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCch
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCC---CcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKG---KVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~---~~~~~~~~~V~~~ 120 (120)
.|++++|.|+++.++. ..++++|+ ||++
T Consensus 162 ~a~~~~~~a~t~~~~~~~~~~~~~~~l-v~~d 192 (231)
T d3mdea2 162 KANWYFLLARSDPDPKAPASKAFTGFI-VEAD 192 (231)
T ss_dssp TEEEEEEEEECCCCTTSCHHHHEEEEE-EETT
T ss_pred hccccceecccccccccccccceEEEE-EeCC
Confidence 9999999999865422 35689999 9975
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]
Probab=99.97 E-value=1e-29 Score=168.44 Aligned_cols=119 Identities=34% Similarity=0.581 Sum_probs=112.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|||.++++++++++++|+|+++++.|.+.++|+.+.+|.++|+.|+++|
T Consensus 1 Mdf~lt~~~~~l~~~~r~f~~~~l~p~~~e~D~~~~~p~e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~~ 80 (232)
T d1buca2 1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA 80 (232)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHhhhcccccccccccccccccccchheehhhhhhh
Confidence 9999999999999999999999999999999999999999999999998
Q ss_pred ------------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCE-EEEEeEeee
Q psy5140 50 ------------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNH-YILNGSKMW 86 (120)
Q Consensus 50 ------------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g-~~l~G~k~~ 86 (120)
+++++++|+.+|++...+.|++++.++| |+|||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~K~~ 160 (232)
T d1buca2 81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF 160 (232)
T ss_dssp HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred hccccccccccchhhhhhhHHHHhhhhhhhhhhhhhhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEEEee
Confidence 8999999999999999999999998775 999999999
Q ss_pred eeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 87 ISNADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 87 v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
|||+..||+++|.++.+++++..++++|+ ||++
T Consensus 161 vt~a~~ad~~~v~a~~~~~~~~~g~~~~l-v~~~ 193 (232)
T d1buca2 161 ITNGGAADIYIVFAMTDKSKGNHGITAFI-LEDG 193 (232)
T ss_dssp EETTTTCSEEEEEEESCSSSSTTSEEEEE-EETT
T ss_pred ecccccceEEEEEEEecCCCCCceeEEEE-EeCC
Confidence 99999999999999998776677899999 9975
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=2.6e-29 Score=166.63 Aligned_cols=119 Identities=31% Similarity=0.468 Sum_probs=112.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.+++++++|++++|+|+++++.|.+.++|+.+.+|.+.|+.|+++|
T Consensus 3 ~~~~L~ee~~~l~~~~r~f~~~~i~p~a~~~d~~~~~p~e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~ 82 (231)
T d1jqia2 3 QSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGC 82 (231)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
++|++++||++|+++..+.|+|++++++|+|||+|.||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~~ 162 (231)
T d1jqia2 83 ASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNS 162 (231)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEETT
T ss_pred cccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeEeec
Confidence 89999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
..++++++.++.+..++..++++|+ ||++
T Consensus 163 ~~a~~~~v~a~~~~~~~~~g~~~~~-Vp~~ 191 (231)
T d1jqia2 163 WEASATVVFASTDRSRQNKGISAFL-VPMP 191 (231)
T ss_dssp TTCSEEEEEEESCGGGGGGSEEEEE-EESS
T ss_pred ccccccccccccccccccCCceEEE-EeCC
Confidence 9999999999987665567899999 9975
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=1.1e-28 Score=163.69 Aligned_cols=119 Identities=29% Similarity=0.402 Sum_probs=111.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|.|.++++++++++++|+|+++++.|.+.+.|+++.+|.++|++|+++|
T Consensus 2 ~~F~l~~e~~~l~~~~r~f~~~~i~p~a~e~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~~~ 81 (233)
T d2d29a2 2 LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYD 81 (233)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHhCCCCHHHHHHHHHhccccccccccccccccchhhhccccccccccc
Confidence 7899999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
++|++++||.+|+++..++|+|++.+++|+|||+|+||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vs~~ 161 (233)
T d2d29a2 82 GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQG 161 (233)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEecCCCCCCcccceeEEEEEECCEEEEecceeccccc
Confidence 78999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCC----CCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVSK----GKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~~----~~~~~~~~~~V~~~ 120 (120)
..||+++|.|++...+ +..++++|+ ||++
T Consensus 162 ~~a~~~~v~a~~~~~~~~~~~~~g~~~~l-v~~~ 194 (233)
T d2d29a2 162 SVAGVYVVMARTDPPPSPERKHQGISAFA-FFRP 194 (233)
T ss_dssp TTCSEEEEEEECSCCSCGGGTTTTEEEEE-EECC
T ss_pred cccccccccccccCCccccccccCceEEE-EEcC
Confidence 9999999999987553 235799999 9975
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.6e-28 Score=162.27 Aligned_cols=115 Identities=27% Similarity=0.436 Sum_probs=106.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.++++|.++++++|+|+++++.|.+.+.|+++.+|.+.|+++.+.|
T Consensus 10 ~d~~Lteeq~~l~d~~r~f~~~~i~p~~~~~d~~~~~p~~~~~~~~~~g~~~~~i~~~gg~g~~~~~~~~~~e~~~~~~~ 89 (236)
T d1siqa2 10 LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDS 89 (236)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHHHTTCH
T ss_pred ccccCCHHHHHHHHHHHHHHHhhCChhHHHHHhcCCCCHHHHHHhhhhhcccccccccccCCcCHHHHHHHHHhhhcccc
Confidence 6788999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEE--EEeCCEEEEEeEeeeeeC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWISN 89 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a--~~~~~g~~l~G~k~~v~~ 89 (120)
++|++++||.+|++...+.|++ ++.+++|+|||+|.||+|
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~~vlnG~K~~vt~ 169 (236)
T d1siqa2 90 GYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITN 169 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEET
T ss_pred ccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcCCCcccccccccccccccccccceEeccccccEec
Confidence 8999999999999999988877 677888999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+..||+++|.|++++ .++++|+ ||.+
T Consensus 170 a~~Ad~~~V~art~~----~~~~~fl-V~~~ 195 (236)
T d1siqa2 170 SPMADLFVVWARCED----GCIRGFL-LEKG 195 (236)
T ss_dssp GGGCSEEEEEEEETT----SCEEEEE-EETT
T ss_pred CCCceEEEEEecccC----CcceEEe-ecCC
Confidence 999999999999863 4688999 9975
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-27 Score=158.25 Aligned_cols=116 Identities=32% Similarity=0.512 Sum_probs=107.8
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC---------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG--------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G--------------------------------- 49 (120)
+.++++|++|++++|+|+++++.|.+.++|+++.+|.++|++|+++|
T Consensus 8 ~~Lt~e~~~l~~~~r~F~~~~i~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e~l~~~~~~ 87 (231)
T d1rx0a2 8 MGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTS 87 (231)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHcCCcccccchhhccccccchhhhhhHHHHhhhccc
Confidence 35899999999999999999999999999999999999999999998
Q ss_pred ------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCC
Q psy5140 50 ------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 93 (120)
Q Consensus 50 ------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a 93 (120)
..+++++|+..|+++..+.|+|+++++||+|||+|+|||++..|
T Consensus 88 ~~~~~~~~~~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te~~~gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~A 167 (231)
T d1rx0a2 88 TTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGES 167 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTC
T ss_pred cccccccccchhhhhhhhcchhhhhhhcchhhcccccccccccccccCCCCCCceEEEEEECCEEEEEeEEccccCCCcC
Confidence 78999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 94 NIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 94 ~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
|+++|.++.++. +..++++|+ ||++
T Consensus 168 d~~~v~a~~~~~-~~~~~~~~l-v~~d 192 (231)
T d1rx0a2 168 DIYVVMCRTGGP-GPKGISCIV-VEKG 192 (231)
T ss_dssp SEEEEEEESSSS-SGGGEEEEE-EETT
T ss_pred CEEEEEEeecCC-CCCceEEEE-EeCC
Confidence 999999997643 456799999 9975
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-26 Score=153.80 Aligned_cols=116 Identities=34% Similarity=0.572 Sum_probs=105.9
Q ss_pred CCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCcc--HHHHHHHhhcC--------------------------------
Q psy5140 4 AYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKID--ETVLKTLFESG-------------------------------- 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~l~~~G-------------------------------- 49 (120)
-+|++|++|++.+++|+++++.|...+.|+.+.+| +++|+.+.++|
T Consensus 7 ~Lseeq~~l~d~~~~f~~~~~~p~~~~~d~~~~~~~~~e~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~ 86 (236)
T d1ivha2 7 GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASG 86 (236)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCccHHHHHHHHHHhhhccccccccccccCcccchhhhhhhhhhhhhh
Confidence 58999999999999999999999999999888776 58999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+|+|+..++|+|+++++||+|||+|+||+++.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~ 166 (236)
T d1ivha2 87 AVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGP 166 (236)
T ss_dssp HHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGG
T ss_pred ccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCccccCeEEEEEECCEEEEEEEEEEEeCCc
Confidence 889999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC--CCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVS--KGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~--~~~~~~~~~~~V~~~ 120 (120)
.|++++|.|+++.. +...++++|+ ||++
T Consensus 167 ~a~~~~v~a~~~~~~~~~~~g~~~fl-V~~~ 196 (236)
T d1ivha2 167 DADVLIVYAKTDLAAVPASRGITAFI-VEKG 196 (236)
T ss_dssp GCSEEEEEEESCTTCSSGGGGEEEEE-EETT
T ss_pred cccccccccccccccccccCccEEEE-EeCC
Confidence 99999999998643 3456799999 9975
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]
Probab=99.93 E-value=9.7e-26 Score=151.72 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=100.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhh----hhc--CccHHHHHHHhhcC-------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKME----SEE--KIDETVLKTLFESG------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~--~~~~~~~~~l~~~G------------------------- 49 (120)
|||.++++|+++++.+|+|+++++.|...+++ +.. ..++++|++|+++|
T Consensus 1 mdf~lt~eq~~l~~~~r~f~~~~~~p~~~~~~~~~d~~~~~~~~~e~~~~~~~~G~~~~~vPee~GG~g~~~~~~~~~~e 80 (259)
T d2c12a2 1 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 80 (259)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHhhhccccccccchHHHHHHHHHcCCCCcCCChHHhhccchhhhhhhhhh
Confidence 99999999999999999999999888765543 333 34789999999998
Q ss_pred ----------------------------------------------ceEEEeeCCCCCCCCC-----cceeEEEEeCCEE
Q psy5140 50 ----------------------------------------------AGSFALSEPGSGSDAF-----AMKTTATKDGNHY 78 (120)
Q Consensus 50 ----------------------------------------------~~~~~~~e~~~g~~~~-----~~~~~a~~~~~g~ 78 (120)
++|++++||.+|||.. .++|+|++++++|
T Consensus 81 el~~~~~~~~~~~~~~~~~~~~i~~~g~~eq~~~~l~~~~~~~g~~~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~~ 160 (259)
T d2c12a2 81 ELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEW 160 (259)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEE
T ss_pred hccccccccccccccccchHHHHHHhhhccccccccccccccceeeeeeccccCCccccccccccccccccccccccchh
Confidence 6899999999999975 4789999999999
Q ss_pred EEEeEeeeeeCCC-----CCCEEEEEEEeCCCC---------CCcceEEEEEeeC
Q psy5140 79 ILNGSKMWISNAD-----IANIFLVMANVDVSK---------GKVTKGLFSSIPT 119 (120)
Q Consensus 79 ~l~G~k~~v~~~~-----~a~~~~v~a~~~~~~---------~~~~~~~~~~V~~ 119 (120)
+|||+|+||||+. .||+++|+|++++++ +..++++|+ ||+
T Consensus 161 vlnG~K~~vt~a~~~~~~~ad~~~v~ar~~~~~~~~~~~~~~~~~g~s~~l-Vp~ 214 (259)
T d2c12a2 161 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLL-VTR 214 (259)
T ss_dssp EEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEE-ECH
T ss_pred ccceeeeeecCCcccccccceEEEEEEEecCCCccccccccCCCCceEEEE-EeC
Confidence 9999999999984 488999999987542 235799999 985
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]
Probab=99.88 E-value=4.2e-22 Score=130.09 Aligned_cols=98 Identities=21% Similarity=0.381 Sum_probs=88.8
Q ss_pred HHHHhhCCchhhhhhhhcCccHHHHHHHhhcC------------------------------------------------
Q psy5140 18 KLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------------------------ 49 (120)
Q Consensus 18 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------------------------ 49 (120)
.++.+.+++++.++|+++.+|+++|++|+++|
T Consensus 4 a~~~~~i~~~Aae~d~~~~~p~~~~~~l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l 83 (210)
T d1r2ja2 4 ALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTV 83 (210)
T ss_dssp HHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhHHHHHHhCCCCHHHHHHHHHcCCCcccCChhHccccccHHHHhhhhccccccccccccccccccccchhh
Confidence 34566789999999999999999999999998
Q ss_pred --------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCc
Q psy5140 50 --------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKV 109 (120)
Q Consensus 50 --------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~ 109 (120)
+.+++++|+.+|++...++|++++++++|+|||+|+||+++..||+++|+++.++ .
T Consensus 84 ~~~gs~~qk~~~l~~~~~g~~~~~~~te~~~gs~~~~~~t~a~~~~~g~~l~G~K~~vs~a~~Ad~~~v~a~~~~----~ 159 (210)
T d1r2ja2 84 QRLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQED----G 159 (210)
T ss_dssp HHHSCHHHHHHHHHHTTCC-CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSS----S
T ss_pred hhcccccccccccccccccccccccccccccccccccccceEEEeccceEEEEeecccccccccccccceeeecC----C
Confidence 7889999999999999999999999999999999999999999999999999753 4
Q ss_pred ceEEEEEeeCC
Q psy5140 110 TKGLFSSIPTG 120 (120)
Q Consensus 110 ~~~~~~~V~~~ 120 (120)
+.++|+ ||++
T Consensus 160 ~~~~~l-v~~~ 169 (210)
T d1r2ja2 160 SGAVVV-VPAD 169 (210)
T ss_dssp CCEEEE-EETT
T ss_pred CceEEe-ecCC
Confidence 457888 9874
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.3e-16 Score=107.23 Aligned_cols=69 Identities=29% Similarity=0.436 Sum_probs=61.5
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEeC--CEEEEEe-----EeeeeeC-CCCCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKDG--NHYILNG-----SKMWISN-ADIANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~~--~g~~l~G-----~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
++|++++||++|||+..++|+|++++ +.|+||| +|+||+| +..|++++|+|++...++..|+++|+ ||.
T Consensus 133 ~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~~K~wit~~~~~a~~~iv~a~~~~~~~~~G~s~F~-V~~ 209 (267)
T d2ddha3 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFV-VPI 209 (267)
T ss_dssp CEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEE-EEC
T ss_pred eeeehhcccCccccccccccceeecccCceeecCccccceeeecCCCCcccCCEEEEeeeccCCCCCCccEEEE-EEe
Confidence 89999999999999999999999876 5699999 6999998 56899999999997665567899999 983
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.63 E-value=1.2e-15 Score=102.65 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=61.1
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEEe-----EeeeeeC-CCCCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNG-----SKMWISN-ADIANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~G-----~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
++|++++||++|||+.+++|+|+++ ++.|+||| +|+|++| +..|++++|+|++...++..++++|+ ||.
T Consensus 131 ~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~wi~~~g~~a~~~vv~a~~~~~~~~~g~~~fl-V~~ 207 (271)
T d1w07a3 131 IGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFI-VQL 207 (271)
T ss_dssp CEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEE-EEC
T ss_pred EEEecccCCccccCcccccceeeecCCCceeeecccccceeeeccCCchhhhhhhheeeeecCCCCCCCEEEEE-Eec
Confidence 8999999999999999999999976 56799999 7999998 56799999999997665567899999 983
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]
Probab=99.34 E-value=2.1e-12 Score=86.73 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=57.6
Q ss_pred ceEEEeeCCCCCCCCCc--------ceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFA--------MKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~--------~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
..+.+++||+.+++... ....+.++++||+|||.|.|+|++..||+++|++++... +...+.++|+ ||.+
T Consensus 144 ~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a~~ad~~~v~~~~~~~~~~~~~~~~f~-Vp~~ 222 (275)
T d1u8va2 144 IVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFA-CPSD 222 (275)
T ss_dssp CEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTTCSEEEECCSSCCCGGGGGGCEEEE-EETT
T ss_pred EEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCCCccceEEEEeccCCCCCCCCcEEEEE-EeCC
Confidence 89999999999887653 234566789999999999999999999999999987544 2345788999 9975
