Psyllid ID: psy5166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MYLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH
Secondary Structure (PSIPRED)
cEEEcccEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHHccccccEEEc
Secondary Structure Prediction (SSPRO)
cEEEcccEEEEEccccccHHHHHHHHHHHHcccccccEEEEEEcccccccEEccHHHHHHHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
MYLFSDEVFItyikpditYDRLQEEVKEMCKFSTDQVFTVKwvdeegdpcliSTQMELEEAIRLYevnhepelvih
Flexible Loop (DISEMBL)
mylfsdevfityikpdiTYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLyevnhepelvih
Low Complexity Region (SEG)
MYLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH
Disordered region (IsUnstruct)
*YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN********
Disordered Region (DISOPRED)
*YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNH**ELVIH
Disordered Region (DISEMBL)
MYLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH
Disordered Region (DISPRO)
MYLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q90XF2	588	Protein kinase C iota typ	yes	N/A	0.960	0.124	0.534	4e-20
P41743	596	Protein kinase C iota typ	yes	N/A	0.960	0.122	0.520	2e-19
Q5R4K9	596	Protein kinase C iota typ	yes	N/A	0.960	0.122	0.520	2e-19
F1M7Y5	596	Protein kinase C iota typ	yes	N/A	0.960	0.122	0.520	5e-19
Q62074	595	Protein kinase C iota typ	yes	N/A	0.960	0.122	0.520	5e-19
Q05513	592	Protein kinase C zeta typ	no	N/A	0.960	0.123	0.452	8e-14
P09217	592	Protein kinase C zeta typ	no	N/A	0.960	0.123	0.452	3e-13
Q02956	592	Protein kinase C zeta typ	no	N/A	0.960	0.123	0.438	6e-12
O19111	591	Protein kinase C zeta typ	no	N/A	0.960	0.123	0.424	7e-12
A8WUG4	597	Protein kinase C-like 3 O	N/A	N/A	0.960	0.122	0.424	2e-11

>sp|Q90XF2|KPCI_DANRE Protein kinase C iota type OS=Danio rerio GN=prkci PE=2 SV=2

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 58/73 (79%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  ++ IT+ +P I+Y+ L  EV++MC    DQ+FT+KW+DEEGDPC +S+Q+ELEEA+R
Sbjct: 25 YRGDIMITHFEPSISYEGLCNEVRDMCSMDNDQLFTMKWIDEEGDPCTVSSQLELEEALR 84

Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL+IH
Sbjct: 85 LYELNKDSELIIH 97

Calcium- and diacylglycerol-independent serine/ threonine-protein kinase that plays a general protective role against apoptotic stimuli, is involved in NF-kappa-B activation, cell survival, differentiation and polarity, and contributes to the regulation of microtubule dynamics in the early secretory pathway (By similarity). Is required for the formation and maintenance of the zonula adherens during early epithelial development and plays a critical role in organ morphogenesis and in regulating the orientation of cell division.
Danio rerio (taxid: 7955)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 3

>sp|P41743|KPCI_HUMAN Protein kinase C iota type OS=Homo sapiens GN=PRKCI PE=1 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 58/73 (79%)

Query: 4   FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
           +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 32  YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 91

Query: 64  LYEVNHEPELVIH 76
           LYE+N + EL+IH
Sbjct: 92  LYELNKDSELLIH 104

Calcium- and diacylglycerol-independent serine/ threonine-protein kinase that plays a general protective role against apoptotic stimuli, is involved in NF-kappa-B activation, cell survival, differentiation and polarity, and contributes to the regulation of microtubule dynamics in the early secretory pathway. Is necessary for BCR-ABL oncogene-mediated resistance to apoptotic drug in leukemia cells, protecting leukemia cells against drug-induced apoptosis. In cultured neurons, prevents amyloid beta protein-induced apoptosis by interrupting cell death process at a very early step. In glioblastoma cells, may function downstream of phosphatidylinositol 3-kinase (PI(3)K) and PDPK1 in the promotion of cell survival by phosphorylating and inhibiting the pro-apoptotic factor BAD. Can form a protein complex in non-small cell lung cancer (NSCLC) cells with PARD6A and ECT2 and regulate ECT2 oncogenic activity by phosphorylation, which in turn promotes transformed growth and invasion. In response to nerve growth factor (NGF), acts downstream of SRC to phosphorylate and activate IRAK1, allowing the subsequent activation of NF-kappa-B and neuronal cell survival. Functions in the organization of the apical domain in epithelial cells by phosphorylating EZR. This step is crucial for activation and normal distribution of EZR at the early stages of intestinal epithelial cell differentiation. Forms a protein complex with LLGL1 and PARD6B independently of PARD3 to regulate epithelial cell polarity. Plays a role in microtubule dynamics in the early secretory pathway through interaction with RAB2A and GAPDH and recruitment to vesicular tubular clusters (VTCs). In human coronary artery endothelial cells (HCAEC), is activated by saturated fatty acids and mediates lipid-induced apoptosis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q5R4K9|KPCI_PONAB Protein kinase C iota type OS=Pongo abelii GN=PRKCI PE=2 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 58/73 (79%)

Query: 4   FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
           +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 32  YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 91

Query: 64  LYEVNHEPELVIH 76
           LYE+N + EL+IH
Sbjct: 92  LYELNKDSELLIH 104

Calcium- and diacylglycerol-independent serine/ threonine-protein kinase that plays a general protective role against apoptotic stimuli, is involved in NF-kappa-B activation, cell survival, differentiation and polarity, and contributes to the regulation of microtubule dynamics in the early secretory pathway. Is necessary for BCR-ABL oncogene-mediated resistance to apoptotic drug in leukemia cells, protecting leukemia cells against drug-induced apoptosis. In cultured neurons, prevents amyloid beta protein-induced apoptosis by interrupting cell death process at a very early step. In glioblastoma cells, may function downstream of phosphatidylinositol 3-kinase (PI(3)K) and PDPK1 in the promotion of cell survival by phosphorylating and inhibiting the pro-apoptotic factor BAD. Can form a protein complex in non-small cell lung cancer (NSCLC) cells with PARD6A and ECT2 and regulate ECT2 oncogenic activity by phosphorylation, which in turn promotes transformed growth and invasion. In response to nerve growth factor (NGF), acts downstream of SRC to phosphorylate and activate IRAK1, allowing the subsequent activation of NF-kappa-B and neuronal cell survival. Functions in the organization of the apical domain in epithelial cells by phosphorylating EZR. This step is crucial for activation and normal distribution of EZR at the early stages of intestinal epithelial cell differentiation. Forms a protein complex with LLGL1 and PARD6B independently of PARD3 to regulate epithelial cell polarity. Plays a role in microtubule dynamics in the early secretory pathway through interaction with RAB2A and GAPDH and recruitment to vesicular tubular clusters (VTCs). In human coronary artery endothelial cells (HCAEC), is activated by saturated fatty acids and mediates lipid-induced apoptosis.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|F1M7Y5|KPCI_RAT Protein kinase C iota type OS=Rattus norvegicus GN=Prkci PE=1 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 57/73 (78%)

Query: 4   FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
           +  ++ IT+ +P I+++ L  EV++MC F  +Q FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 32  YRGDIMITHFEPSISFEGLCSEVRDMCSFDNEQPFTMKWIDEEGDPCTVSSQLELEEAFR 91

Query: 64  LYEVNHEPELVIH 76
           LYE+N + EL+IH
Sbjct: 92  LYELNKDSELLIH 104

Calcium- and diacylglycerol-independent serine/ threonine-protein kinase that plays a general protective role against apoptotic stimuli, is involved in NF-kappa-B activation, cell survival, differentiation and polarity, and contributes to the regulation of microtubule dynamics in the early secretory pathway. Is necessary for BCR-ABL oncogene-mediated resistance to apoptotic drug in leukemia cells, protecting leukemia cells against drug-induced apoptosis. In cultured neurons, prevents amyloid beta protein-induced apoptosis by interrupting cell death process at a very early step. In glioblastoma cells, may function downstream of phosphatidylinositol 3-kinase (PI3K) and PDPK1 in the promotion of cell survival by phosphorylating and inhibiting the pro-apoptotic factor BAD. Can form a protein complex in non-small cell lung cancer (NSCLC) cells with PARD6A and ECT2 and regulate ECT2 oncogenic activity by phosphorylation, which in turn promotes transformed growth and invasion. In response to nerve growth factor (NGF), acts downstream of SRC to phosphorylate and activate IRAK1, allowing the subsequent activation of NF-kappa-B and neuronal cell survival. Functions in the organization of the apical domain in epithelial cells by phosphorylating EZR. This step is crucial for activation and normal distribution of EZR at the early stages of intestinal epithelial cell differentiation. Forms a protein complex with LLGL1 and PARD6B independently of PARD3 to regulate epithelial cell polarity. Plays a role in microtubule dynamics in the early secretory pathway through interaction with RAB2A and GAPDH and recruitment to vesicular tubular clusters (VTCs). In human coronary artery endothelial cells (HCAEC), is activated by saturated fatty acids and mediates lipid-induced apoptosis. Downstream of PI3K is required for insulin-stimulated glucose transport. Activates RAB4A and promotes its associtation with KIF3A which is required for the insulin-induced SLC2A4/GLUT4 translocation in adipocytes. Is essential in early embryogenesis and development of differentiating photoreceptors by playing a role in the establishment of epithelial and neuronal polarity.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q62074|KPCI_MOUSE Protein kinase C iota type OS=Mus musculus GN=Prkci PE=1 SV=3

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 57/73 (78%)

Query: 4   FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
           +  ++ IT+ +P I+++ L  EV++MC F  +Q FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 32  YRGDIMITHFEPSISFEGLCSEVRDMCSFDNEQPFTMKWIDEEGDPCTVSSQLELEEAFR 91

Query: 64  LYEVNHEPELVIH 76
           LYE+N + EL+IH
Sbjct: 92  LYELNKDSELLIH 104

Calcium- and diacylglycerol-independent serine/ threonine-protein kinase that plays a general protective role against apoptotic stimuli, is involved in NF-kappa-B activation, cell survival, differentiation and polarity, and contributes to the regulation of microtubule dynamics in the early secretory pathway. Is necessary for BCR-ABL oncogene-mediated resistance to apoptotic drug in leukemia cells, protecting leukemia cells against drug-induced apoptosis. In cultured neurons, prevents amyloid beta protein-induced apoptosis by interrupting cell death process at a very early step. In glioblastoma cells, may function downstream of phosphatidylinositol 3-kinase (PI3K) and PDPK1 in the promotion of cell survival by phosphorylating and inhibiting the pro-apoptotic factor BAD. Can form a protein complex in non-small cell lung cancer (NSCLC) cells with PARD6A and ECT2 and regulate ECT2 oncogenic activity by phosphorylation, which in turn promotes transformed growth and invasion. In response to nerve growth factor (NGF), acts downstream of SRC to phosphorylate and activate IRAK1, allowing the subsequent activation of NF-kappa-B and neuronal cell survival. Functions in the organization of the apical domain in epithelial cells by phosphorylating EZR. This step is crucial for activation and normal distribution of EZR at the early stages of intestinal epithelial cell differentiation. Forms a protein complex with LLGL1 and PARD6B independently of PARD3 to regulate epithelial cell polarity. Plays a role in microtubule dynamics in the early secretory pathway through interaction with RAB2A and GAPDH and recruitment to vesicular tubular clusters (VTCs). In human coronary artery endothelial cells (HCAEC), is activated by saturated fatty acids and mediates lipid-induced apoptosis (By similarity). Downstream of PI3K is required for insulin-stimulated glucose transport. Activates RAB4A and promotes its associtation with KIF3A which is required for the insulin-induced SLC2A4/GLUT4 translocation in adipocytes. Is essential in early embryogenesis and development of differentiating photoreceptors by playing a role in the establishment of epithelial and neuronal polarity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q05513|KPCZ_HUMAN Protein kinase C zeta type OS=Homo sapiens GN=PRKCZ PE=1 SV=4

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 47/73 (64%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  ++FIT +    T++ L EEV++MC+       T+KWVD EGDPC +S+QMELEEA R
Sbjct: 22 YGGDIFITSVDAATTFEELCEEVRDMCRLHQQHPLTLKWVDSEGDPCTVSSQMELEEAFR 81

Query: 64 LYEVNHEPELVIH 76
          L     +  L+IH
Sbjct: 82 LARQCRDEGLIIH 94

Calcium- and diacylglycerol-independent serine/threonine-protein kinase that functions in phosphatidylinositol 3-kinase (PI3K) pathway and mitogen-activated protein (MAP) kinase cascade, and is involved in NF-kappa-B activation, mitogenic signaling, cell proliferation, cell polarity, inflammatory response and maintenance of long-term potentiation (LTP). Upon lipopolysaccharide (LPS) treatment in macrophages, or following mitogenic stimuli, functions downstream of PI3K to activate MAP2K1/MEK1-MAPK1/ERK2 signaling cascade independently of RAF1 activation. Required for insulin-dependent activation of AKT3, but may function as an adapter rather than a direct activator. Upon insulin treatment may act as a downstream effector of PI3K and contribute to the activation of translocation of the glucose transporter SLC2A4/GLUT4 and subsequent glucose transport in adipocytes. In EGF-induced cells, binds and activates MAP2K5/MEK5-MAPK7/ERK5 independently of its kinase activity and can activate JUN promoter through MEF2C. Through binding with SQSTM1/p62, functions in interleukin-1 signaling and activation of NF-kappa-B with the specific adapters RIPK1 and TRAF6. Participates in TNF-dependent transactivation of NF-kappa-B by phosphorylating and activating IKBKB kinase, which in turn leads to the degradation of NF-kappa-B inhibitors. In migrating astrocytes, forms a cytoplasmic complex with PARD6A and is recruited by CDC42 to function in the establishment of cell polarity along with the microtubule motor and dynein. In association with FEZ1, stimulates neuronal differentiation in PC12 cells. In inflammatory response, is required for the T-helper 2 (Th2) differentiation process, including interleukines production, efficient activation of JAK1 and the subsequent phosphorylation and nuclear translocation of STAT6. May be involved in development of allergic airway inflammation (asthma), a process dependent on Th2 immune response. In NF-kappa-B-mediated inflammatory response, can relieve the SETD6-dependent repression of NF-kappa-B target genes by phosphorylating the RELA subunit at 'Ser-311'. Is necessary and sufficient for LTP maintenance in hippocampal CA1 pyramidal cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|P09217|KPCZ_RAT Protein kinase C zeta type OS=Rattus norvegicus GN=Prkcz PE=1 SV=2

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 45/73 (61%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  ++ IT + P  T+  L EEV++MC        T+KWVD EGDPC +S+QMELEEA R
Sbjct: 22 YGGDILITSVDPTTTFQDLCEEVRDMCGLHQQHPLTLKWVDSEGDPCTVSSQMELEEAFR 81

Query: 64 LYEVNHEPELVIH 76
          L     +  L+IH
Sbjct: 82 LACQGRDEVLIIH 94

Calcium- and diacylglycerol-independent serine/threonine-protein kinase that functions in phosphatidylinositol 3-kinase (PI3K) pathway and mitogen-activated protein (MAP) kinase cascade, and is involved in NF-kappa-B activation, mitogenic signaling, cell proliferation, cell polarity, inflammatory response and maintenance of long-term potentiation (LTP). Upon lipopolysaccharide (LPS) treatment in macrophages, or following mitogenic stimuli, functions downstream of PI3K to activate MAP2K1/MEK1-MAPK1/ERK2 signaling cascade independently of RAF1 activation. Required for insulin-dependent activation of AKT3, but may function as an adapter rather than a direct activator. Upon insulin treatment may act as a downstream effector of PI3K and contribute to the activation of translocation of the glucose transporter SLC2A4/GLUT4 and subsequent glucose transport in adipocytes. In EGF-induced cells, binds and activates MAP2K5/MEK5-MAPK7/ERK5 independently of its kinase activity and can activate JUN promoter through MEF2C. Through binding with SQSTM1/p62, functions in interleukin-1 signaling and activation of NF-kappa-B with the specific adapters RIPK1 and TRAF6. Participates in TNF-dependent transactivation of NF-kappa-B by phosphorylating and activating IKBKB kinase, which in turn leads to the degradation of NF-kappa-B inhibitors. In migrating astrocytes, forms a cytoplasmic complex with PARD6A and is recruited by CDC42 to function in the establishment of cell polarity along with the microtubule motor and dynein. In association with FEZ1, stimulates neuronal differentiation in PC12 cells. In inflammatory response, is required for the T-helper 2 (Th2) differentiation process, including interleukines production, efficient activation of JAK1 and the subsequent phosphorylation and nuclear translocation of STAT6. May be involved in development of allergic airway inflammation (asthma), a process dependent on Th2 immune response. In NF-kappa-B-mediated inflammatory response, can relieve the SETD6-dependent repression of NF-kappa-B target genes by phosphorylating the RELA subunit at 'Ser-311'. Is necessary and sufficient for LTP maintenance in hippocampal CA1 pyramidal cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q02956|KPCZ_MOUSE Protein kinase C zeta type OS=Mus musculus GN=Prkcz PE=1 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 44/73 (60%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  ++ IT +    T+  L EEV++MC        T+KWVD EGDPC +S+QMELEEA R
Sbjct: 22 YGGDILITSVDAMTTFKDLCEEVRDMCGLHQQHPLTLKWVDSEGDPCTVSSQMELEEAFR 81

Query: 64 LYEVNHEPELVIH 76
          L     +  L+IH
Sbjct: 82 LVCQGRDEVLIIH 94

Calcium- and diacylglycerol-independent serine/threonine-protein kinase that functions in phosphatidylinositol 3-kinase (PI3K) pathway and mitogen-activated protein (MAP) kinase cascade, and is involved in NF-kappa-B activation, mitogenic signaling, cell proliferation, cell polarity, inflammatory response and maintenance of long-term potentiation (LTP). Upon lipopolysaccharide (LPS) treatment in macrophages, or following mitogenic stimuli, functions downstream of PI3K to activate MAP2K1/MEK1-MAPK1/ERK2 signaling cascade independently of RAF1 activation. Required for insulin-dependent activation of AKT3, but may function as an adapter rather than a direct activator. Upon insulin treatment may act as a downstream effector of PI3K and contribute to the activation of translocation of the glucose transporter SLC2A4/GLUT4 and subsequent glucose transport in adipocytes. In EGF-induced cells, binds and activates MAP2K5/MEK5-MAPK7/ERK5 independently of its kinase activity and can activate JUN promoter through MEF2C. Through binding with SQSTM1/p62, functions in interleukin-1 signaling and activation of NF-kappa-B with the specific adapters RIPK1 and TRAF6. Participates in TNF-dependent transactivation of NF-kappa-B by phosphorylating and activating IKBKB kinase, which in turn leads to the degradation of NF-kappa-B inhibitors. In migrating astrocytes, forms a cytoplasmic complex with PARD6A and is recruited by CDC42 to function in the establishment of cell polarity along with the microtubule motor and dynein. In association with FEZ1, stimulates neuronal differentiation in PC12 cells. Is necessary and sufficient for LTP maintenance in hippocampal CA1 pyramidal cells (By similarity). In inflammatory response, is required for the T-helper 2 (Th2) differentiation process, including interleukines production, efficient activation of JAK1 and the subsequent phosphorylation and nuclear translocation of STAT6. May be involved in development of allergic airway inflammation (asthma), a process dependent on Th2 immune response. In NF-kappa-B-mediated inflammatory response, can relieve the SETD6-dependent repression of NF-kappa-B target genes by phosphorylating the RELA subunit at 'Ser-311'.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|O19111|KPCZ_RABIT Protein kinase C zeta type OS=Oryctolagus cuniculus GN=PRKCZ PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +S ++FIT +    T++ L EEV++MC        T+KWVD EGDP  +S+QMEL EA R
Sbjct: 22 YSGDIFITSVDAATTFEELCEEVRDMCGLHQHHPLTLKWVDSEGDPRTVSSQMELGEAFR 81

Query: 64 LYEVNHEPELVIH 76
          L   + +  L++H
Sbjct: 82 LAGQHRDDGLILH 94

Calcium- and diacylglycerol-independent serine/threonine-protein kinase that functions in phosphatidylinositol 3-kinase (PI3K) pathway and mitogen-activated protein (MAP) kinase cascade, and is involved in NF-kappa-B activation, mitogenic signaling, cell proliferation, cell polarity, inflammatory response and maintenance of long-term potentiation (LTP). Upon lipopolysaccharide (LPS) treatment in macrophages, or following mitogenic stimuli, functions downstream of PI3K to activate MAP2K1/MEK1-MAPK1/ERK2 signaling cascade independently of RAF1 activation. Required for insulin-dependent activation of AKT3, but may function as an adapter rather than a direct activator. Upon insulin treatment may act as a downstream effector of PI3K and contribute to the activation of translocation of the glucose transporter SLC2A4/GLUT4 and subsequent glucose transport in adipocytes. In EGF-induced cells, binds and activates MAP2K5/MEK5-MAPK7/ERK5 independently of its kinase activity and can activate JUN promoter through MEF2C. Through binding with SQSTM1/p62, functions in interleukin-1 signaling and activation of NF-kappa-B with the specific adapters RIPK1 and TRAF6. Participates in TNF-dependent transactivation of NF-kappa-B by phosphorylating and activating IKBKB kinase, which in turn leads to the degradation of NF-kappa-B inhibitors. In migrating astrocytes, forms a cytoplasmic complex with PARD6A and is recruited by CDC42 to function in the establishment of cell polarity along with the microtubule motor and dynein. In association with FEZ1, stimulates neuronal differentiation in PC12 cells. In inflammatory response, is required for the T-helper 2 (Th2) differentiation process, including interleukines production, efficient activation of JAK1 and the subsequent phosphorylation and nuclear translocation of STAT6. May be involved in development of allergic airway inflammation (asthma), a process dependent on Th2 immune response. In NF-kappa-B-mediated inflammatory response, can relieve the SETD6-dependent repression of NF-kappa-B target genes by phosphorylating the RELA subunit at 'Ser-311'. Is necessary and sufficient for LTP maintenance in hippocampal CA1 pyramidal cells.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

>sp|A8WUG4|KPC3_CAEBR Protein kinase C-like 3 OS=Caenorhabditis briggsae GN=pkc-3 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          F  +V + Y +P +  D     +++ CK    Q  TVKW+DE+GDP  I +QMEL+EA+R
Sbjct: 19 FHGQVVVLYARPPLILDDFFALLRDACKQHAKQDITVKWIDEDGDPISIDSQMELDEAVR 78

Query: 64 LYEVNHEPELVIH 76
             V+ E EL IH
Sbjct: 79 CLNVSQEAELNIH 91

Required for the normal progression of embryogenesis and viability of the organism. Plays an indispensable role in establishing embryonic polarity and in recruiting and maintaining par-6 to the periphery, through interaction with par-3. Required for epithelial cell polarity in the distal spermatheca. Phosphorylates serine residues of num-1.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
242022063	98	conserved hypothetical protein [Pediculu	0.960	0.744	0.602	1e-20
328713256	588	PREDICTED: protein kinase C iota type-li	0.960	0.124	0.630	2e-20
118792855	135	AGAP011993-PA [Anopheles gambiae str. PE	0.960	0.540	0.643	2e-19
312374098	198	hypothetical protein AND_16475 [Anophele	0.960	0.368	0.630	2e-19
47223111	602	unnamed protein product [Tetraodon nigro	0.960	0.121	0.534	2e-19
432917944	769	PREDICTED: protein kinase C iota type-li	0.960	0.094	0.534	2e-19
270011887	626	hypothetical protein TcasGA2_TC005978 [T	0.960	0.116	0.602	2e-19
148225356	588	protein kinase C, iota [Xenopus laevis]	0.960	0.124	0.575	2e-19
60592770	588	protein kinase C, iota [Xenopus (Siluran	0.960	0.124	0.575	3e-19
89271332	588	protein kinase C, iota [Xenopus (Siluran	0.960	0.124	0.575	3e-19

>gi|242022063|ref|XP_002431461.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516749|gb|EEB18723.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 62/73 (84%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          ++ E  ITYI   IT+D+L +E++++CKFS+DQ+FT+KW+D+EGDPC +S QMEL+EAIR
Sbjct: 16 YNGEKMITYINQQITFDQLCDEMRDICKFSSDQLFTMKWIDDEGDPCTLSNQMELDEAIR 75

Query: 64 LYEVNHEPELVIH 76
          LY+VN E ELV+H
Sbjct: 76 LYDVNKESELVVH 88

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713256|ref|XP_003245026.1| PREDICTED: protein kinase C iota type-like [Acyrthosiphon pisum]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 61/73 (83%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          F+ EV ITYI P IT ++L+ E+  +C+FS+DQ FT+KWVDEEGDPC++STQMEL+EA+R
Sbjct: 15 FNGEVMITYINPKITVEKLRYEMMVICRFSSDQDFTMKWVDEEGDPCILSTQMELDEAVR 74

Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL IH
Sbjct: 75 LYELNKDSELTIH 87

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118792855|ref|XP_320539.3| AGAP011993-PA [Anopheles gambiae str. PEST] gi|116117099|gb|EAA00497.3| AGAP011993-PA [Anopheles gambiae str. PEST]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 57/73 (78%)

Query: 4   FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
           ++ EV ITYI   ITYD L  E++E+C+FS DQVFT+KWVDEE DPC I +  EL+EAIR
Sbjct: 28  YNGEVMITYIDESITYDGLCREMREICRFSPDQVFTMKWVDEENDPCTIQSDTELDEAIR 87

Query: 64  LYEVNHEPELVIH 76
           LYEVN + ELVIH
Sbjct: 88  LYEVNRDSELVIH 100

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374098|gb|EFR21739.1| hypothetical protein AND_16475 [Anopheles darlingi]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 58/73 (79%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +S EV ITYI   I+Y+ L  E++E+C+FS DQVFT+KWVDEE DPC I + +EL+EAIR
Sbjct: 27 YSGEVMITYIDESISYEGLCREMREICRFSPDQVFTMKWVDEENDPCTIQSDIELDEAIR 86

Query: 64 LYEVNHEPELVIH 76
          LYEVN + ELVIH
Sbjct: 87 LYEVNRDSELVIH 99

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47223111|emb|CAG07198.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 58/73 (79%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  ++ IT+ +P I+Y+ L  EV++MC    DQ+FT+KW+DEEGDPC +S+Q+ELEEA+R
Sbjct: 17 YKGDIMITHFEPSISYEGLYGEVRDMCSMDNDQLFTMKWIDEEGDPCTVSSQLELEEALR 76

Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL+IH
Sbjct: 77 LYELNKDSELIIH 89

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432917944|ref|XP_004079575.1| PREDICTED: protein kinase C iota type-like [Oryzias latipes]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 58/73 (79%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  ++ IT+ +P I+Y+ L  EV++MC    DQ+FT+KW+DEEGDPC +S+Q+ELEEA+R
Sbjct: 26 YKGDIMITHFEPSISYEGLSGEVRDMCSMENDQLFTMKWIDEEGDPCTVSSQLELEEALR 85

Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL+IH
Sbjct: 86 LYELNKDSELIIH 98

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270011887|gb|EFA08335.1| hypothetical protein TcasGA2_TC005978 [Tribolium castaneum]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 60/73 (82%)

Query: 4   FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
           ++ EV ITYI   IT++ L +EV  +C+F+ +Q+FT+KWVDEEGDPC+ISTQMEL+EA+R
Sbjct: 516 YNGEVLITYIDQSITFEELLQEVVVICRFAPNQLFTMKWVDEEGDPCIISTQMELDEALR 575

Query: 64  LYEVNHEPELVIH 76
           LYEVN + E+ IH
Sbjct: 576 LYEVNRDNEVTIH 588

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148225356|ref|NP_001084068.1| protein kinase C, iota [Xenopus laevis] gi|527675|gb|AAA75362.1| protein kinase C subspecies lambda/iota [Xenopus laevis]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 57/73 (78%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          F  ++ IT+ +P IT+D L  EV++MC F  DQ FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 25 FKGDIMITHFEPSITFDGLCNEVRDMCSFENDQPFTMKWIDEEGDPCTVSSQLELEEAFR 84

Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL+IH
Sbjct: 85 LYELNKDSELLIH 97

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|60592770|ref|NP_001012707.1| protein kinase C, iota [Xenopus (Silurana) tropicalis] gi|58429107|gb|AAW77999.1| protein kinase C lambda [Xenopus (Silurana) tropicalis]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 57/73 (78%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          F  ++ IT+ +P IT+D L  EV++MC F  DQ FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 25 FKGDIMITHFEPSITFDGLCNEVRDMCSFENDQPFTMKWIDEEGDPCTVSSQLELEEAFR 84

Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL+IH
Sbjct: 85 LYELNKDSELLIH 97

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|89271332|emb|CAJ82563.1| protein kinase C, iota [Xenopus (Silurana) tropicalis] gi|171846941|gb|AAI61528.1| protein kinase C, iota [Xenopus (Silurana) tropicalis] gi|213624451|gb|AAI71120.1| protein kinase C, iota [Xenopus (Silurana) tropicalis]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 57/73 (78%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          F  ++ IT+ +P IT+D L  EV++MC F  DQ FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 25 FKGDIMITHFEPSITFDGLCNEVRDMCSFENDQPFTMKWIDEEGDPCTVSSQLELEEAFR 84

Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL+IH
Sbjct: 85 LYELNKDSELLIH 97

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
UNIPROTKB|Q91569	588	prkci "Protein kinase C subspe	0.960	0.124	0.575	1.8e-20
ZFIN|ZDB-GENE-011105-1	588	prkci "protein kinase C, iota"	0.960	0.124	0.534	1e-19
UNIPROTKB|E1BWA3	599	PRKCI "Uncharacterized protein	0.960	0.121	0.534	1.1e-19
UNIPROTKB|P41743	596	PRKCI "Protein kinase C iota t	0.960	0.122	0.520	4.7e-19
UNIPROTKB|Q5R4K9	596	PRKCI "Protein kinase C iota t	0.960	0.122	0.520	4.7e-19
UNIPROTKB|F1MQ96	672	PRKCI "Uncharacterized protein	0.960	0.108	0.520	6e-19
UNIPROTKB|F1PG28	703	PRKCI "Uncharacterized protein	0.960	0.103	0.520	6.5e-19
MGI|MGI:99260	595	Prkci "protein kinase C, iota"	0.960	0.122	0.520	9.8e-19
RGD|620961	596	Prkci "protein kinase C, iota"	0.960	0.122	0.520	9.8e-19
FB|FBgn0261854	608	aPKC "atypical protein kinase	0.960	0.120	0.547	2.2e-18

UNIPROTKB|Q91569 prkci "Protein kinase C subspecies lambda/iota" [Xenopus laevis (taxid:8355)]

 Score = 250 (93.1 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 42/73 (57%), Positives = 57/73 (78%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             F  ++ IT+ +P IT+D L  EV++MC F  DQ FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct:    25 FKGDIMITHFEPSITFDGLCNEVRDMCSFENDQPFTMKWIDEEGDPCTVSSQLELEEAFR 84

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:    85 LYELNKDSELLIH 97

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005543 "phospholipid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045216 "cell-cell junction organization" evidence=ISS

ZFIN|ZDB-GENE-011105-1 prkci "protein kinase C, iota" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 39/73 (53%), Positives = 58/73 (79%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             +  ++ IT+ +P I+Y+ L  EV++MC    DQ+FT+KW+DEEGDPC +S+Q+ELEEA+R
Sbjct:    25 YRGDIMITHFEPSISYEGLCNEVRDMCSMDNDQLFTMKWIDEEGDPCTVSSQLELEEALR 84

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:    85 LYELNKDSELIIH 97

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0001841 "neural tube formation" evidence=IGI

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0031226 "intrinsic to plasma membrane" evidence=IDA

GO:0042476 "odontogenesis" evidence=IMP

GO:0004697 "protein kinase C activity" evidence=IEA

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IGI;IMP

GO:0007097 "nuclear migration" evidence=IGI;IMP

GO:0048699 "generation of neurons" evidence=IGI;IMP

GO:0007420 "brain development" evidence=IMP

GO:0007405 "neuroblast proliferation" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0045216 "cell-cell junction organization" evidence=ISS

GO:0005543 "phospholipid binding" evidence=ISS

GO:0007502 "digestive tract mesoderm development" evidence=IMP

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

GO:0034332 "adherens junction organization" evidence=IMP

GO:0034334 "adherens junction maintenance" evidence=IMP

GO:0005915 "zonula adherens" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0045217 "cell-cell junction maintenance" evidence=IMP

GO:0021744 "dorsal motor nucleus of vagus nerve development" evidence=IMP

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=IMP

UNIPROTKB|E1BWA3 PRKCI "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 243 (90.6 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 39/73 (53%), Positives = 58/73 (79%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             +  ++ ITY +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct:    35 YKGDIMITYFEPSISFEGLCSEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 94

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:    95 LYELNKDSELLIH 107

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004697 "protein kinase C activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0034351 "negative regulation of glial cell apoptotic process" evidence=IEA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0045216 "cell-cell junction organization" evidence=IEA

GO:0046326 "positive regulation of glucose import" evidence=IEA

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0060252 "positive regulation of glial cell proliferation" evidence=IEA

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:2000353 "positive regulation of endothelial cell apoptotic process" evidence=IEA

UNIPROTKB|P41743 PRKCI "Protein kinase C iota type" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 4.7e-19, P = 4.7e-19
 Identities = 38/73 (52%), Positives = 58/73 (79%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct:    32 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 91

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:    92 LYELNKDSELLIH 104

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0048194 "Golgi vesicle budding" evidence=IEA

GO:0070555 "response to interleukin-1" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA;TAS

GO:0005524 "ATP binding" evidence=TAS

GO:0005543 "phospholipid binding" evidence=IDA

GO:0045216 "cell-cell junction organization" evidence=IMP;TAS

GO:0046903 "secretion" evidence=NAS

GO:0006612 "protein targeting to membrane" evidence=NAS

GO:0000133 "polarisome" evidence=TAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0016044 "cellular membrane organization" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010976 "positive regulation of neuron projection development" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IDA

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:2000353 "positive regulation of endothelial cell apoptotic process" evidence=IMP

GO:0034351 "negative regulation of glial cell apoptotic process" evidence=IMP

GO:0060252 "positive regulation of glial cell proliferation" evidence=IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0070830 "tight junction assembly" evidence=TAS

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=ISS

GO:0046326 "positive regulation of glucose import" evidence=ISS

GO:0032869 "cellular response to insulin stimulus" evidence=ISS

GO:0004697 "protein kinase C activity" evidence=ISS

UNIPROTKB|Q5R4K9 PRKCI "Protein kinase C iota type" [Pongo abelii (taxid:9601)]

 Score = 237 (88.5 bits), Expect = 4.7e-19, P = 4.7e-19
 Identities = 38/73 (52%), Positives = 58/73 (79%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct:    32 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 91

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:    92 LYELNKDSELLIH 104

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0010976 "positive regulation of neuron projection development" evidence=ISS

GO:0034351 "negative regulation of glial cell apoptotic process" evidence=ISS

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISS

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=ISS

GO:0060252 "positive regulation of glial cell proliferation" evidence=ISS

GO:2000353 "positive regulation of endothelial cell apoptotic process" evidence=ISS

UNIPROTKB|F1MQ96 PRKCI "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 237 (88.5 bits), Expect = 6.0e-19, P = 6.0e-19
 Identities = 38/73 (52%), Positives = 58/73 (79%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct:   108 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 167

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:   168 LYELNKDSELLIH 180

GO:2000353 "positive regulation of endothelial cell apoptotic process" evidence=IEA

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:0060252 "positive regulation of glial cell proliferation" evidence=IEA

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0046326 "positive regulation of glucose import" evidence=IEA

GO:0045216 "cell-cell junction organization" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IEA

GO:0034351 "negative regulation of glial cell apoptotic process" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0004697 "protein kinase C activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|F1PG28 PRKCI "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 38/73 (52%), Positives = 58/73 (79%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct:   139 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 198

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:   199 LYELNKDSELLIH 211

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

MGI|MGI:99260 Prkci "protein kinase C, iota" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 9.8e-19, P = 9.8e-19
 Identities = 38/73 (52%), Positives = 57/73 (78%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             +  ++ IT+ +P I+++ L  EV++MC F  +Q FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct:    32 YRGDIMITHFEPSISFEGLCSEVRDMCSFDNEQPFTMKWIDEEGDPCTVSSQLELEEAFR 91

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:    92 LYELNKDSELLIH 104

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004697 "protein kinase C activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=ISO

GO:0005543 "phospholipid binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005923 "tight junction" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO;IDA

GO:0007015 "actin filament organization" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016477 "cell migration" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031252 "cell leading edge" evidence=ISO

GO:0032869 "cellular response to insulin stimulus" evidence=ISO;IMP

GO:0034351 "negative regulation of glial cell apoptotic process" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0035089 "establishment of apical/basal cell polarity" evidence=IMP

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IMP

GO:0043220 "Schmidt-Lanterman incisure" evidence=IDA

GO:0043234 "protein complex" evidence=ISO

GO:0043434 "response to peptide hormone stimulus" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0045216 "cell-cell junction organization" evidence=ISO

GO:0046326 "positive regulation of glucose import" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048194 "Golgi vesicle budding" evidence=ISO

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0060252 "positive regulation of glial cell proliferation" evidence=ISO

GO:0070555 "response to interleukin-1" evidence=ISO

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IMP

GO:2000353 "positive regulation of endothelial cell apoptotic process" evidence=ISO

RGD|620961 Prkci "protein kinase C, iota" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 9.8e-19, P = 9.8e-19
 Identities = 38/73 (52%), Positives = 57/73 (78%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             +  ++ IT+ +P I+++ L  EV++MC F  +Q FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct:    32 YRGDIMITHFEPSISFEGLCSEVRDMCSFDNEQPFTMKWIDEEGDPCTVSSQLELEEAFR 91

Query:    64 LYEVNHEPELVIH 76
             LYE+N + EL+IH
Sbjct:    92 LYELNKDSELLIH 104

GO:0003674 "molecular_function" evidence=ND

GO:0004672 "protein kinase activity" evidence=ISO;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004697 "protein kinase C activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=ISO;IDA

GO:0007015 "actin filament organization" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=ISO;ISS

GO:0016324 "apical plasma membrane" evidence=IEA;ISO

GO:0016477 "cell migration" evidence=IMP

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0031252 "cell leading edge" evidence=IDA

GO:0032869 "cellular response to insulin stimulus" evidence=ISO;IMP

GO:0034351 "negative regulation of glial cell apoptotic process" evidence=ISO;ISS

GO:0034613 "cellular protein localization" evidence=IMP

GO:0035089 "establishment of apical/basal cell polarity" evidence=IEA;ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA;ISO

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

GO:0043434 "response to peptide hormone stimulus" evidence=IDA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO;ISS

GO:0045177 "apical part of cell" evidence=ISO

GO:0045216 "cell-cell junction organization" evidence=IEA;ISO

GO:0046326 "positive regulation of glucose import" evidence=IEA;ISO

GO:0048194 "Golgi vesicle budding" evidence=IDA

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0060252 "positive regulation of glial cell proliferation" evidence=ISO;ISS

GO:0070555 "response to interleukin-1" evidence=IMP

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA;ISO

GO:2000353 "positive regulation of endothelial cell apoptotic process" evidence=ISO;ISS

GO:0005923 "tight junction" evidence=IDA

FB|FBgn0261854 aPKC "atypical protein kinase C" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 40/73 (54%), Positives = 57/73 (78%)

Query:     4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
             ++ ++ IT I  +I+Y+ L  E++ +C+F  DQ FT+KWVDEE DPC IST+MEL+EAIR
Sbjct:    37 YNGQIIITTINKNISYEELCYEIRNICRFPLDQPFTIKWVDEENDPCTISTKMELDEAIR 96

Query:    64 LYEVNHEPELVIH 76
             LYE+N + +LVIH
Sbjct:    97 LYEMNFDSQLVIH 109

GO:0004697 "protein kinase C activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA;NAS

GO:0045186 "zonula adherens assembly" evidence=NAS;TAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=IMP;NAS

GO:0045179 "apical cortex" evidence=IDA;NAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP;NAS;TAS

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=IMP;NAS

GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0035003 "subapical complex" evidence=TAS

GO:0055059 "asymmetric neuroblast division" evidence=IGI

GO:0007043 "cell-cell junction assembly" evidence=NAS

GO:0016324 "apical plasma membrane" evidence=NAS;TAS

GO:0045176 "apical protein localization" evidence=NAS

GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=IPI

GO:0007309 "oocyte axis specification" evidence=TAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0030011 "maintenance of cell polarity" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005938 "cell cortex" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0007423 "sensory organ development" evidence=IMP

GO:0007314 "oocyte anterior/posterior axis specification" evidence=IGI

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

GO:0046667 "compound eye retinal cell programmed cell death" evidence=IDA

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0090163 "establishment of epithelial cell planar polarity" evidence=IGI;IMP

GO:0003382 "epithelial cell morphogenesis" evidence=IGI;IMP

GO:0010592 "positive regulation of lamellipodium assembly" evidence=IMP

GO:0051491 "positive regulation of filopodium assembly" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q90XF2	KPCI_DANRE	2, ., 7, ., 1, 1, ., 1, 3	0.5342	0.9605	0.1241	yes	N/A
P41743	KPCI_HUMAN	2, ., 7, ., 1, 1, ., 1, 3	0.5205	0.9605	0.1224	yes	N/A
F1M7Y5	KPCI_RAT	2, ., 7, ., 1, 1, ., 1, 3	0.5205	0.9605	0.1224	yes	N/A
Q62074	KPCI_MOUSE	2, ., 7, ., 1, 1, ., 1, 3	0.5205	0.9605	0.1226	yes	N/A
Q5R4K9	KPCI_PONAB	2, ., 7, ., 1, 1, ., 1, 3	0.5205	0.9605	0.1224	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
cd06404	83	cd06404, PB1_aPKC, PB1 domain is an essential modu	3e-33
smart00666	81	smart00666, PB1, PB1 domain	5e-14
cd05992	81	cd05992, PB1, The PB1 domain is a modular domain m	9e-14
pfam00564	84	pfam00564, PB1, PB1 domain	5e-10
cd06398	91	cd06398, PB1_Joka2, The PB1 domain is present in t	0.001

>gnl|CDD|99725 cd06404, PB1_aPKC, PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

 Score =  108 bits (273), Expect = 3e-33
 Identities = 42/75 (56%), Positives = 56/75 (74%)

Query: 2  YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEA 61
            ++ ++ IT I P I+ + L  EV++MC+F  DQ FT+KW+DEEGDPC IS+QMELEEA
Sbjct: 5  AAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEA 64

Query: 62 IRLYEVNHEPELVIH 76
           RLYE+N + EL IH
Sbjct: 65 FRLYELNKDSELNIH 79

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The aPKC protein contains a type I/II PB1 domain. Length = 83

>gnl|CDD|214770 smart00666, PB1, PB1 domain

 Score = 59.9 bits (146), Expect = 5e-14
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  E     +  DI+++ L+ +V +      +Q FT+K+ DE+GD   +++  +LEEAI 
Sbjct: 8  YGGETRRLSVPRDISFEDLRSKVAKRFGLD-NQSFTLKYQDEDGDLVSLTSDEDLEEAIE 66

Query: 64 LYEVNHEPELVIH 76
           Y+     +L +H
Sbjct: 67 EYDSLGSKKLRLH 79

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. Length = 81

>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

 Score = 59.6 bits (145), Expect = 9e-14
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 5  SDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRL 64
           +      +   I+++ L+ ++ E         F +K+ DE+GD   IS+  +LEEAI  
Sbjct: 9  GEIRRFVVVSRSISFEDLRSKIAEKFGLD-AVSFKLKYPDEDGDLVTISSDEDLEEAIEE 67

Query: 65 YEVNHEPELVIH 76
             +   +L + 
Sbjct: 68 ARRSGSKKLRLF 79

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 81

>gnl|CDD|215996 pfam00564, PB1, PB1 domain

 Score = 50.0 bits (120), Expect = 5e-10
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 4  FSDEVFIT-YIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAI 62
          +   +     + P I+++ L+ +V++         F +K+ DE+GD   I++  +LEEAI
Sbjct: 8  YGGGIRRFLSVSPGISFEELRSKVEQRFG-LDRVDFKLKYPDEDGDLVSITSDEDLEEAI 66

Query: 63 RLYEVNHEPELVIH 76
                    L +H
Sbjct: 67 EEARSLGSKTLRLH 80

Length = 84

>gnl|CDD|99720 cd06398, PB1_Joka2, The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 14 KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          + D+  D L+E+V+E+   S D   ++ + DE+GD   +    +L +AI+
Sbjct: 22 QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQ 71

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	100.0
KOG0695|consensus	593		100.0
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	99.9
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	99.89
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	99.88
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	99.82
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	99.65
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	99.63
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	99.6
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	99.4
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	99.36
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	99.29
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	98.69
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	98.52
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	97.6
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	96.86
cd06405	79	PB1_Mekk2_3 The PB1 domain is present in the two m	96.75
cd06395	91	PB1_Map2k5 PB1 domain is essential part of the mit	96.3
PF06970	76	RepA_N: Replication initiator protein A (RepA) N-t	94.11
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	92.49
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	86.68

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=100.00  E-value=1.1e-43  Score=229.38  Aligned_cols=75  Identities=56%  Similarity=1.033  Sum_probs=74.3

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      ++|+||||+++++++++|++||+|+|++|+|.++|+||+||+||||||||||||+||+||||||++||||+|+||
T Consensus         5 ~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ih   79 (83)
T cd06404           5 AAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNIH   79 (83)
T ss_pred             EEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999999

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>KOG0695|consensus

Probab=100.00  E-value=8e-34  Score=225.55  Aligned_cols=75  Identities=48%  Similarity=0.917  Sum_probs=74.3

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      ++|+|||+++|++|+++|++||+++||+|+++++|+||+||||||||||||||||||+||+||+++++|+||+||
T Consensus        20 a~y~g~i~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d~el~ih   94 (593)
T KOG0695|consen   20 AHYGGDIFITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRDEELIIH   94 (593)
T ss_pred             EeecCcEEEEeccCcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHHhccccceEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999998

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=99.90  E-value=6.2e-24  Score=136.52  Aligned_cols=65  Identities=22%  Similarity=0.281  Sum_probs=62.7

Q ss_pred             ccccCceEEEecCC--CCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCC
Q psy5166           2 YLFSDEVFITYIKP--DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNH   69 (76)
Q Consensus         2 ~~~~gdi~~~~~~~--~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnk   69 (76)
                      |+|+||++++++++  +.+|++|+++++..|+|+   +|++||+|||||||++|||.||+||+|+++-+.
T Consensus         5 aty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~   71 (81)
T cd06396           5 VTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQG   71 (81)
T ss_pred             EEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCC
Confidence            68999999999999  889999999999999999   999999999999999999999999999998775

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=99.89  E-value=7.7e-23  Score=130.24  Aligned_cols=72  Identities=19%  Similarity=0.421  Sum_probs=69.0

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCce
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPEL   73 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL   73 (76)
                      +.|+||+++++++++++|++|++++++.|++++.+.|++||+|+|||||+|++|.+|+||+|++..++.+.+
T Consensus         5 ~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v   76 (82)
T cd06407           5 ATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTI   76 (82)
T ss_pred             EEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeE
Confidence            689999999999999999999999999999998899999999999999999999999999999999887764

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=99.88  E-value=9.4e-23  Score=132.26  Aligned_cols=63  Identities=21%  Similarity=0.354  Sum_probs=60.3

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhh
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEV   67 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~el   67 (76)
                      ++|+||++.+.++++|+|++||+++|+.|+|.  |+||+||.|| ||||||+||++|++|||.+.-
T Consensus         7 v~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~--~~~~iKykDE-GD~iti~sq~DLd~Ai~~a~~   69 (86)
T cd06408           7 VHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK--RRLKIKMKDD-GDMITMGDQDDLDMAIDTARS   69 (86)
T ss_pred             EEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC--CceEEEEEcC-CCCccccCHHHHHHHHHHHHH
Confidence            58999999999999999999999999999995  7999999999 999999999999999998874

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=99.82  E-value=3.5e-20  Score=120.21  Aligned_cols=61  Identities=30%  Similarity=0.390  Sum_probs=56.2

Q ss_pred             CceEEEecCCCC--ChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166           6 DEVFITYIKPDI--TYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE   66 (76)
Q Consensus         6 gdi~~~~~~~~i--~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e   66 (76)
                      -+|+++++++..  +|++|+++++++|.+..+|+||+||.|+||||||||||+||.+|+....
T Consensus        14 ~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~   76 (87)
T cd06402          14 AEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN   76 (87)
T ss_pred             cceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence            589999996654  8999999999999999999999999999999999999999999987754

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>smart00666 PB1 PB1 domain

Probab=99.65  E-value=7.2e-16  Score=94.07  Aligned_cols=74  Identities=28%  Similarity=0.469  Sum_probs=68.2

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      ++|+|+++++.++++++|++|++++.+.+++.. +.|+++|.|+|||.++++++.+|.+|++++..++...|.||
T Consensus         6 ~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~-~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~~~l~l~   79 (81)
T smart00666        6 LRYGGETRRLSVPRDISFEDLRSKVAKRFGLDN-QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGSKKLRLH   79 (81)
T ss_pred             EEECCEEEEEEECCCCCHHHHHHHHHHHhCCCC-CCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCCceEEEE
Confidence            578999999999999999999999999999876 57999999999999999999999999999998877777664

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=99.63  E-value=1.4e-15  Score=92.13  Aligned_cols=74  Identities=24%  Similarity=0.377  Sum_probs=67.7

Q ss_pred             ccccCceEEEecC-CCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFITYIK-PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~~~~~-~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      ++|+|++++..++ .+++|++|++++++.+++.. +.|+++|.|+|||.++++|+.+|.+|++.+..+...-|.||
T Consensus         5 ~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~   79 (81)
T cd05992           5 VKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSKKLRLF   79 (81)
T ss_pred             EEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEE
Confidence            5799999999999 99999999999999999987 78999999999999999999999999999987666666553

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=99.60  E-value=4.9e-15  Score=90.27  Aligned_cols=74  Identities=24%  Similarity=0.431  Sum_probs=66.3

Q ss_pred             ccccCceEE-EecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFI-TYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~-~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      ++|+|++++ ..+.++++|++|.++++..|++. ...|+++|.|+|||.++|++|.+|.+|+..+.-.+...|.+|
T Consensus         6 ~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~~~~~lrl~   80 (84)
T PF00564_consen    6 VRYGGDIRRIISLPSDVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKESGSKTLRLF   80 (84)
T ss_dssp             EEETTEEEEEEEECSTSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             EEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence            579999999 99999999999999999999998 668999999999999999999999999999987544455543

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=99.40  E-value=8.2e-13  Score=85.59  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=61.4

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhh
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEV   67 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~el   67 (76)
                      +.|+|+.++++++..+++++|.+|+..+++++... |.++|+||+||-+|+||..||+||+|+...
T Consensus         5 v~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~-~~vtYiDeD~D~ITlssd~eL~d~~~~~~~   69 (82)
T cd06397           5 SSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIK-VGVTYIDNDNDEITLSSNKELQDFYRLSHR   69 (82)
T ss_pred             EEeCCceEEEecCCCccHHHHHHHHHHHhCCChhH-eEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence            47999999999999999999999999999999875 999999999999999999999999997654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=99.36  E-value=4.3e-12  Score=82.29  Aligned_cols=64  Identities=23%  Similarity=0.431  Sum_probs=60.8

Q ss_pred             ccccCceEEEecCC-----CCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166           2 YLFSDEVFITYIKP-----DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY   65 (76)
Q Consensus         2 ~~~~gdi~~~~~~~-----~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~   65 (76)
                      +.|+|+++++.++.     +++|++|.+|+++.++++....|+++|.||+||-++++++.+|+||+...
T Consensus         5 v~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~   73 (91)
T cd06398           5 VKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYF   73 (91)
T ss_pred             EEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHH
Confidence            57999999999996     69999999999999999988899999999999999999999999999884

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=99.29  E-value=9.7e-12  Score=80.29  Aligned_cols=66  Identities=26%  Similarity=0.358  Sum_probs=59.7

Q ss_pred             ccccCceEEEecCC-CCChHHHHHHHHHhhc--CCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhh
Q psy5166           2 YLFSDEVFITYIKP-DITYDRLQEEVKEMCK--FSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEV   67 (76)
Q Consensus         2 ~~~~gdi~~~~~~~-~i~~e~L~~e~rd~c~--~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~el   67 (76)
                      +.|+|||+..++++ +++|.+|.+.++.+++  |+....|++||-|+|||-+||+|..||..|+...+.
T Consensus         5 ~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~~   73 (81)
T cd06401           5 AQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSRI   73 (81)
T ss_pred             EEeCCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcCcc
Confidence            57999999999997 5899999999999998  667788999999999999999999999999877653

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=98.69  E-value=7.4e-08  Score=62.45  Aligned_cols=66  Identities=18%  Similarity=0.292  Sum_probs=60.5

Q ss_pred             ccCceEEEecCCCCChHHHHHHHHHhhcCCCC--CeeeEEeeccCCCccccCcHHHHHHHHhhhhhCC
Q psy5166           4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTD--QVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNH   69 (76)
Q Consensus         4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~--q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnk   69 (76)
                      -+|++.++.+.++-++.+|.++|..=.+.+..  ..|.++|+|+|||...+.++..|.||+.++..-.
T Consensus         8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g   75 (86)
T cd06409           8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAG   75 (86)
T ss_pred             CCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcC
Confidence            37999999999999999999999999988875  7899999999999999999999999999886543

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=98.52  E-value=4.9e-07  Score=58.47  Aligned_cols=61  Identities=13%  Similarity=0.201  Sum_probs=57.3

Q ss_pred             ccccCceEEEecCCC--CChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHh
Q psy5166           2 YLFSDEVFITYIKPD--ITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR   63 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~--i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~R   63 (76)
                      ..|+++.++++++..  .+|++++..+..+-.+.+- +|+++|.|..||-.+|+++.++.+|+.
T Consensus         5 SkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~-~f~i~Y~D~~gDLLPInNDdNf~kAls   67 (80)
T cd06403           5 SKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNV-DFLIGYTDPHGDLLPINNDDNFLKALS   67 (80)
T ss_pred             cccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCC-cEEEEEeCCCCCEecccCcHHHHHHHH
Confidence            468999999999997  8999999999999999985 899999999999999999999999985

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=97.60  E-value=0.00037  Score=45.68  Aligned_cols=61  Identities=21%  Similarity=0.344  Sum_probs=53.1

Q ss_pred             ccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEee--ccCCC-ccccCcHHHHHHHHhhhh
Q psy5166           4 FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWV--DEEGD-PCLISTQMELEEAIRLYE   66 (76)
Q Consensus         4 ~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwv--DeEGD-PctiSsq~ELeEA~RL~e   66 (76)
                      -+|+..+.+++.++||.+|..++.++|+....  +++||-  +|+-| -++|+++..|...+.-|.
T Consensus        20 ~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~--~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~   83 (97)
T cd06410          20 VGGETRIVSVDRSISFKELVSKLSELFGAGVV--VTLKYQLPDEDLDALISVSNDEDLKNMMEEYD   83 (97)
T ss_pred             cCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc--eEEEEEcCCCCcceeEEecCcHHHHHHHHhhc
Confidence            36788899999999999999999999998865  999996  57677 789999999998887665

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=96.86  E-value=0.0065  Score=39.16  Aligned_cols=62  Identities=11%  Similarity=0.222  Sum_probs=51.2

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY   65 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~   65 (76)
                      .+|++ .......+.++|.+|++++++=.++.++ -.++.|-||.+.-....++.+|+.|+...
T Consensus         7 V~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e-~i~LsYkde~s~~~v~l~d~dle~aws~~   68 (80)
T cd06406           7 VHFKY-TVAIQVARGLSYATLLQKISSKLELPAE-HITLSYKSEASGEDVILSDTNMEDVWSQA   68 (80)
T ss_pred             EEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCch-hcEEEeccCCCCCccCcChHHHHHHHHhh
Confidence            46777 6777799999999999999999999855 48999999776555555899999998764

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development

Probab=96.75  E-value=0.0088  Score=38.74  Aligned_cols=61  Identities=20%  Similarity=0.267  Sum_probs=52.0

Q ss_pred             cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166           3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN   68 (76)
Q Consensus         3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln   68 (76)
                      -|+|.-+|.-+..++.|++|.+++.+.|+    |+..+.+...| =-+-+-.|.+|+-|+-+...+
T Consensus         6 E~~gEKRIi~f~RPvkf~dl~~kv~~afG----q~mdl~ytn~e-L~iPl~~Q~DLDkAie~ld~s   66 (79)
T cd06405           6 EHNGEKRIIQFPRPVKFKDLQQKVTTAFG----QPMDLHYTNNE-LLIPLKNQEDLDRAIELLDRS   66 (79)
T ss_pred             EecCceEEEecCCCccHHHHHHHHHHHhC----CeeeEEEeccc-EEEeccCHHHHHHHHHHHccC
Confidence            58999999999999999999999999996    45778887655 455566999999999987764

The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f

>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development

Probab=96.30  E-value=0.0095  Score=39.33  Aligned_cols=50  Identities=14%  Similarity=0.364  Sum_probs=41.8

Q ss_pred             CCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166          15 PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE   66 (76)
Q Consensus        15 ~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e   66 (76)
                      +.++|.++.+-++++..=.  .+....|-||+||-+||-|+.||+-.+..|.
T Consensus        21 ~~L~F~DvL~~I~~vlp~a--T~tAFeYEDE~gDRITVRSDeEm~AMlsyy~   70 (91)
T cd06395          21 PQLLFRDVLDVIGQVLPEA--TTTAFEYEDEDGDRITVRSDEEMKAMLSYYC   70 (91)
T ss_pred             ccccHHHHHHHHHHhcccc--cccceeeccccCCeeEecchHHHHHHHHHHH
Confidence            5589999999999986544  3456678899999999999999998887653

The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.

>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []

Probab=94.11  E-value=0.025  Score=35.51  Aligned_cols=41  Identities=24%  Similarity=0.369  Sum_probs=30.8

Q ss_pred             HHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166          22 LQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE   66 (76)
Q Consensus        22 L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e   66 (76)
                      |..-+++-.+++.+    =.||||+|+.+-+-|..||.+.+...+
T Consensus        26 lY~ll~dR~~lS~k----n~wiDe~G~vYi~~s~eel~~~L~~s~   66 (76)
T PF06970_consen   26 LYSLLLDRLRLSLK----NGWIDENGNVYIIFSIEELMELLNCSK   66 (76)
T ss_pred             HHHHHHHHHHhhhh----cCcCCCCCCEEEEeeHHHHHHHHCCCH
Confidence            44445555555543    349999999999999999999887654

Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=92.49  E-value=0.33  Score=32.24  Aligned_cols=51  Identities=14%  Similarity=0.150  Sum_probs=42.3

Q ss_pred             ecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166          12 YIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY   65 (76)
Q Consensus        12 ~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~   65 (76)
                      ++....+|.+|..-+|+.+.-.   -+++-|.|-|||-+.+-|+.+++=.++=.
T Consensus        23 ~l~~~P~~kdLl~lmr~~f~~~---dIaLNYrD~EGDLIRllddeDv~LMV~~~   73 (92)
T cd06399          23 DLSSTPLLKDLLELTRREFQRE---DIALNYRDAEGDLIRLLSDEDVALMVRQS   73 (92)
T ss_pred             ccccCccHHHHHHHHHHHhchh---heeeeeecCCCCEEEEcchhhHHHHHHHH
Confidence            3445568999999999999877   57999999999999999999887655543

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

>smart00295 B41 Band 4

Probab=86.68  E-value=3.7  Score=27.46  Aligned_cols=58  Identities=16%  Similarity=0.208  Sum_probs=45.7

Q ss_pred             cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCc-cccCcHHHHHH
Q psy5166           3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDP-CLISTQMELEE   60 (76)
Q Consensus         3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDP-ctiSsq~ELeE   60 (76)
                      -.+|......++++.+.+++++++...+++...+-|.+..++.++.. .-+++...+.+
T Consensus        10 l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~   68 (207)
T smart00295       10 LLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLD   68 (207)
T ss_pred             ecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHH
Confidence            35788888899999999999999999999999899999999976644 23334333333

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
1wmh_A	89	Crystal Structure Of A Pb1 Domain Complex Of Protei		2e-20

>pdb|1WMH|A Chain A, Crystal Structure Of A Pb1 Domain Complex Of Protein Kinase C Iota And Par6 Alpha Length = 89

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 58/73 (79%)
Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72
Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL+IH
Sbjct: 73 LYELNKDSELLIH 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	6e-28
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	4e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Length = 89

 Score = 95.0 bits (236), Expect = 6e-28
 Identities = 38/73 (52%), Positives = 58/73 (79%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA R
Sbjct: 13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72

Query: 64 LYEVNHEPELVIH 76
          LYE+N + EL+IH
Sbjct: 73 LYELNKDSELLIH 85

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Length = 117

 Score = 35.1 bits (80), Expect = 4e-04
 Identities = 11/45 (24%), Positives = 16/45 (35%)

Query: 18  TYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAI 62
             +RL   V  +        F   +  E GD    S+  EL  A+
Sbjct: 58  PSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAM 102

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 34.9 bits (79), Expect = 7e-04
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 57 ELEEAIRLYEVNHEPELVIH 76
          +L+ +++LY  +  P L I 
Sbjct: 24 KLQASLKLYADDSAPALAIK 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	100.0
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	99.65
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	99.61
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	99.57
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	99.55
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	99.17
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	98.53
1pqs_A	77	Cell division control protein 24; alpha and beta p	98.34
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	97.83
2cu1_A	103	Mitogen-activated protein kinase kinase kinase 2;	97.81
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	97.03
2jrh_A	94	Mitogen-activated protein kinase kinase kinase 3;	96.82
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	96.66
2c60_A	111	Human mitogen-activated protein kinase kinase kina	96.59
2npt_B	100	Mitogen-activated protein kinase kinase kinase 2;	96.52
2npt_A	106	Dual specificity mitogen-activated protein kinase;	96.45

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=100.00  E-value=1e-35  Score=192.16  Aligned_cols=75  Identities=51%  Similarity=1.043  Sum_probs=74.0

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      ++|+||+++++++++++|++||+|+|++|++..+|+||+||+||||||||||||+||+||+|||++|++++|+||
T Consensus        11 ~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ih   85 (89)
T 1vd2_A           11 AYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIH   85 (89)
T ss_dssp             EESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999998

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=99.65  E-value=2.8e-16  Score=101.58  Aligned_cols=71  Identities=24%  Similarity=0.412  Sum_probs=62.0

Q ss_pred             ccccCceEEEecCC--CCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFITYIKP--DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~~~~~~--~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      +.|+|+..++.+.-  .+++++|...++..|+|.   .|.+||.|||||+|+|+||.|++||+|++ .++...|.+|
T Consensus        11 V~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~Sq~E~eEAlkva-~k~~n~L~m~   83 (87)
T 2bkf_A           11 VTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMA-VKQGNQLQMQ   83 (87)
T ss_dssp             EEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHH-HHTTTEEEEE
T ss_pred             EEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEEEecHHHHHHHHHHh-ccCCCEEEEE
Confidence            47999999976644  999999999999999998   68999999999999999999999999955 4555567664

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=99.61  E-value=8.5e-16  Score=101.62  Aligned_cols=71  Identities=23%  Similarity=0.385  Sum_probs=61.4

Q ss_pred             ccccCceEEEec--CCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFITYI--KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~~~~--~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      +.|+|++.++.+  ...+++++|...++..|+|.   .|.+||.|||||+|+|+||.|++||+|++. |+..+|.+|
T Consensus        19 V~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i~Sq~E~eEAlkva~-k~~n~L~m~   91 (101)
T 1wj6_A           19 VTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAV-KQGNQLQMQ   91 (101)
T ss_dssp             EEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECCCSHHHHHHHHHHHH-HHTSEEEEE
T ss_pred             EEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEEEEecHHHHHHHHHHhc-cCCCEEEEE
Confidence            479999999666  45999999999999999998   679999999999999999999999999654 444556654

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=99.57  E-value=3.9e-15  Score=97.76  Aligned_cols=62  Identities=19%  Similarity=0.143  Sum_probs=55.6

Q ss_pred             cCceEEEecCCC-----------CChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166           5 SDEVFITYIKPD-----------ITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE   66 (76)
Q Consensus         5 ~gdi~~~~~~~~-----------i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e   66 (76)
                      +++|++++++.+           .+|+.|+++++++|..-.+..|++||.|||||++|||++.||.+|+....
T Consensus        19 ~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~   91 (102)
T 2kkc_A           19 AREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK   91 (102)
T ss_dssp             EEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred             CCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence            479999999743           48999999999999877777899999999999999999999999998654

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=99.55  E-value=8.1e-15  Score=98.56  Aligned_cols=61  Identities=20%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             CceEEEecCCC-----------CChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166           6 DEVFITYIKPD-----------ITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE   66 (76)
Q Consensus         6 gdi~~~~~~~~-----------i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e   66 (76)
                      ++|++++++.+           .+|+.|+++++++|..-.+..|++||.|||||++||||+.||.+|+....
T Consensus        35 ~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~  106 (117)
T 2ktr_A           35 REIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK  106 (117)
T ss_dssp             EEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred             CcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence            69999999743           49999999999999666666899999999999999999999999998653

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=99.17  E-value=5e-11  Score=76.59  Aligned_cols=63  Identities=11%  Similarity=0.100  Sum_probs=57.2

Q ss_pred             ccccCceEEEecCC--CCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166           2 YLFSDEVFITYIKP--DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY   65 (76)
Q Consensus         2 ~~~~gdi~~~~~~~--~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~   65 (76)
                      ..|.++++++++++  +.+|++|+..++.++++.+. +|+++|.|++||-++||++.+|.+|+...
T Consensus        11 skf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~-~f~i~Y~D~dGDLlpInnDdnl~~Al~~a   75 (86)
T 1wmh_B           11 SKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGL-DVLLGYTDAHGDLLPLTNDDSLHRALASG   75 (86)
T ss_dssp             EEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTC-CCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred             eecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCC-CEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence            46899999999984  48999999999999998655 89999999999999999999999998754

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=98.53  E-value=2.5e-07  Score=60.41  Aligned_cols=62  Identities=16%  Similarity=0.326  Sum_probs=54.2

Q ss_pred             CceEEEecCCCCChHHHHHHHHHhhcCC-CC---CeeeEEeeccCCCccccCcHHHHHHHHhhhhh
Q psy5166           6 DEVFITYIKPDITYDRLQEEVKEMCKFS-TD---QVFTVKWVDEEGDPCLISTQMELEEAIRLYEV   67 (76)
Q Consensus         6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~-~~---q~fT~kwvDeEGDPctiSsq~ELeEA~RL~el   67 (76)
                      +|+++..+.++++|.+|++++++-.++. ++   ..+.+|+-||+||-+|+.||..|+-|+.-..=
T Consensus        22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~~e   87 (98)
T 1q1o_A           22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAE   87 (98)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHHh
Confidence            8899999999999999999999988874 22   23799999999999999999999999986543

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=98.34  E-value=6.1e-07  Score=56.01  Aligned_cols=61  Identities=16%  Similarity=0.333  Sum_probs=53.1

Q ss_pred             CceEEEecCCCCChHHHHHHHHHhhcCC-C---CCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166           6 DEVFITYIKPDITYDRLQEEVKEMCKFS-T---DQVFTVKWVDEEGDPCLISTQMELEEAIRLYE   66 (76)
Q Consensus         6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~-~---~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e   66 (76)
                      .|+++..++++++|.+|.+++++-.+.. +   ...+.+|+-||+||-+|+.+|..|+-|+.-..
T Consensus         1 ~D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~   65 (77)
T 1pqs_A            1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA   65 (77)
T ss_dssp             CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            4788899999999999999999988853 1   24589999999999999999999999997653

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=97.83  E-value=4.9e-05  Score=48.71  Aligned_cols=59  Identities=22%  Similarity=0.427  Sum_probs=51.7

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHh
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR   63 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~R   63 (76)
                      ..|++|++..-++++|+|.+||+|+++=...++..+|.-+- |..|+  .|.|+.+|+-|+.
T Consensus        17 ~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykd-e~~g~--~i~sD~dl~~aiq   75 (85)
T 1ip9_A           17 FYYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLF-DGSGE--EIKTDSQVSNIIQ   75 (85)
T ss_dssp             ECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCS-SSCCS--CCCSHHHHHHHHH
T ss_pred             EEecCcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEecC-CCCCC--cccCHHHHHHHHH
Confidence            36999999999999999999999999999998777776663 55888  8899999999974

>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=97.81  E-value=7.7e-05  Score=49.32  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=53.5

Q ss_pred             cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166           3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN   68 (76)
Q Consensus         3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln   68 (76)
                      -|+|.-+|..++.+++|++|..|+.++|+.    ..++.+.+-| =-+.+-+|.+|+.|+-++..+
T Consensus        14 E~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq----~ldL~y~n~E-llIpl~sQeDLDkaIellDrs   74 (103)
T 2cu1_A           14 EHRGEKRILQFPRPVKLEDLRSKAKIAFGQ----SMDLHYTNNE-LVIPLTTQDDLDKAVELLDRS   74 (103)
T ss_dssp             EETTEEEEEEEESSCCHHHHHHHHHHHHSS----CEEEEECSSS-SCEECCSHHHHHHHHHHHHHC
T ss_pred             EecCeEEEEeccCCccHHHHHHHHHHHhCC----eeeEEEecce-EEEeccCHHHHHHHHHHHccC
Confidence            489999999999999999999999999976    5788898654 456677999999999998766

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=97.03  E-value=0.0016  Score=43.21  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=44.7

Q ss_pred             CCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166          14 KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN   68 (76)
Q Consensus        14 ~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln   68 (76)
                      ....+|.+|..-||..+.-.   -+++++.|.|||-++|.++.+++=|++-....
T Consensus        30 ~~~P~ykdLl~lmr~~F~~~---DIaLNYrD~eGDLIrilddeDv~lmi~~sr~~   81 (107)
T 1oey_J           30 SSTPLLKDLLELTRREFQRE---DIALNYRDAEGDLVRLLSDEDVALMVRQARGL   81 (107)
T ss_dssp             TCCCCHHHHHHHHHHHHCCS---SEEEEEECTTSCEEECCSHHHHHHHHHHCCCC
T ss_pred             ccCCCHHHHHHHHHHHhccc---ceeeeeecCCCCEEEEcchHHHHHHHHHhhcC
Confidence            34558999999999999843   68999999999999999999999888766543

>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A

Probab=96.82  E-value=0.0067  Score=39.42  Aligned_cols=61  Identities=16%  Similarity=0.300  Sum_probs=51.7

Q ss_pred             cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166           3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN   68 (76)
Q Consensus         3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln   68 (76)
                      -|+|.-+|.-+..++.|++|.+++.+.|+.    +..+.|...| =-+-+-+|.+|+-|+-|...+
T Consensus        10 E~~gEKRIi~f~RPvkf~dl~qkv~~afGq----~ldl~y~nnE-L~iPL~~Q~DLDkAvelLDrs   70 (94)
T 2jrh_A           10 EHNGERRIIAFSRPVKYEDVEHKVTTVFGQ----PLDLHYMNNE-LSILLKNQDDLDKAIDILDRS   70 (94)
T ss_dssp             EETTEEEEEEECSSCCHHHHHHHHHHHHCS----SEEEEEECSS-CEEECCSHHHHHHHHHHHHHS
T ss_pred             EecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecce-eEEeccCHHHHHHHHHHhccC
Confidence            489999999999999999999999999964    5778887544 455667999999999996654

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=96.66  E-value=0.0042  Score=39.11  Aligned_cols=62  Identities=6%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhh
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY   65 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~   65 (76)
                      .+|. +.......+.++|.+|++++++-..+... -.++.|-|+++.-..++++..|++|++..
T Consensus        10 V~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~-~~~LsYk~~~s~~~vi~~d~dl~~aw~~~   71 (83)
T 1oey_A           10 VHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLE-HTKLSYRPRDSNELVPLSEDSMKDAWGQV   71 (83)
T ss_dssp             EESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGG-GCCEEECCTTCSSCEECCTTTHHHHHTTC
T ss_pred             EEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcc-eeEEEeeCCCCCCeeccChHHHHHHHHhc
Confidence            3566 77788899999999999999999999744 47888888655555599999999999863

>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B

Probab=96.59  E-value=0.011  Score=39.43  Aligned_cols=61  Identities=16%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166           3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN   68 (76)
Q Consensus         3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln   68 (76)
                      -|+|.-+|.-+..++.|++|.+++.+.|+.    +..+.+...| =-+-+-+|.+|+-|+-|...+
T Consensus        37 E~~gEKRIiqf~RPvkf~dl~qkv~~afGq----~ldl~y~nnE-L~IPL~~Q~DLDkAvelLDrs   97 (111)
T 2c60_A           37 EHNGERRIIAFSRPVKYEDVEHKVTTVFGQ----PLDLHYMNNE-LSILLKNQDDLDKAIDILDRS   97 (111)
T ss_dssp             EETTEEEEEEECSSCCHHHHHHHHHHHHSS----CCEEEEECSS-CEEECCSHHHHHHHHHHHHHC
T ss_pred             EecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecce-EEEecccHHHHHHHHHHhccC
Confidence            489999999999999999999999999964    5678887544 445566999999999997654

>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2

Probab=96.52  E-value=0.011  Score=38.77  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166           3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN   68 (76)
Q Consensus         3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln   68 (76)
                      -|+|.-+|.-+..++.|++|.+++.+.|+.    ...+.|...| =-+-+-.|.+|+-|+-|...+
T Consensus        26 E~~gEkRIi~f~RPv~f~el~~kv~~afGq----~ldl~y~nnE-L~iPL~~Q~DLDkAvelLDrs   86 (100)
T 2npt_B           26 EHRGEKRILQFPRPVKLEDLRSKAKIAFGQ----SMDLHYTNNE-LVIPLTTQDDLDKAVELLDRS   86 (100)
T ss_dssp             EETTEEEEEEECSSCCHHHHHHHHHHHHTS----CEEEEEEETT-EEEECCCHHHHHHHHHHHHHC
T ss_pred             EecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecce-eEEecccHHHHHHHHHHhccC
Confidence            489999999999999999999999999975    5678887544 445567999999999997654

>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A

Probab=96.45  E-value=0.015  Score=38.41  Aligned_cols=50  Identities=16%  Similarity=0.383  Sum_probs=41.6

Q ss_pred             CCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166          15 PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE   66 (76)
Q Consensus        15 ~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e   66 (76)
                      +.++|-++.+-++++..-..  .....|-||+||-+||-|+.||+-.+..|.
T Consensus        35 ~~L~FrDvL~~I~~vmP~aT--~TAFeYEDE~gDRITVRSDeE~kAMlsyy~   84 (106)
T 2npt_A           35 PQLLFRDVLDVIGQVLPEAT--TTAFEYEDEDGDRITVRSDEEMKAMLSYYY   84 (106)
T ss_dssp             -CCCHHHHHHHHHHHSTTSC--CSEEEEECTTSCEEEECSHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhCccce--eeeeeeccccCCeeEEcchHHHHHHHHHHH
Confidence            67899999999999976554  345678899999999999999998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1wmha_	83	d.15.2.2 (A:) Protein kinase C, iota type {Human (	3e-35
d1ip9a_	85	d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker'	4e-08
d2bkfa1	85	d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NB	2e-07

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 3e-35
 Identities = 38/75 (50%), Positives = 58/75 (77%)

Query: 2  YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEA 61
            +  ++ IT+ +P I+++ L  EV++MC F  +Q+FT+KW+DEEGDPC +S+Q+ELEEA
Sbjct: 6  AYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEA 65

Query: 62 IRLYEVNHEPELVIH 76
           RLYE+N + EL+IH
Sbjct: 66 FRLYELNKDSELLIH 80

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (103), Expect = 4e-08
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 4  FSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR 63
          + D++F   +K D TY  L+ ++    +  TD  F ++    +G    I T  ++   I+
Sbjct: 19 YKDDIFALMLKGDTTYKELRSKIAP--RIDTDN-FKLQTKLFDGSGEEIKTDSQVSNIIQ 75

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 2e-07
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 16 DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLY 65
          + T+  ++  VK     +T     +K++DEE +   I++Q E EEA+++ 
Sbjct: 25 NTTWADIEAMVKVSFDLNT---IQIKYLDEENEEVSINSQGEYEEALKMA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	100.0
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	99.57
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	99.48
d1pqsa_	77	Cell division control protein 24, CDC24, C-termina	97.72
d2npta1	105	Mitogen activated protein kinase kinase 5, Map2k5	97.38
d2c60a1	80	Mitogen-activated protein kinase kinase kinase 3,	96.84
d2nptb1	82	Mitogen-activated protein kinase kinase kinase 2,	96.68
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	93.77
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	91.63
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	81.51

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-50  Score=255.78  Aligned_cols=75  Identities=51%  Similarity=1.043  Sum_probs=74.3

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceecC
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVIH   76 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~iH   76 (76)
                      ++|+|+||++|++++++|++||+++|++|+|+++||||+|||||||||||||||+||+||||||++||||||+||
T Consensus         6 ~~y~G~i~it~~~~~it~e~l~~evr~~C~f~~~q~fT~KWiDeEGDPCTISSQmEL~EA~RLye~n~dseL~iH   80 (83)
T d1wmha_           6 AYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIH   80 (83)
T ss_dssp             EEETTEEEEEEECTTCCHHHHHHHHHHHTTCCTTCCCEEEEECTTSCEEECCSHHHHHHHHHHHHHTTCSCEEEE
T ss_pred             EEecCeEEEEecCCCccHHHHHHHHHHHhCCCcCCcEEEEEEcCCCCceeeecHHHHHHHHHHHHccCCcceEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999998

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=4.2e-15  Score=92.13  Aligned_cols=59  Identities=20%  Similarity=0.358  Sum_probs=55.9

Q ss_pred             ccccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHh
Q psy5166           2 YLFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR   63 (76)
Q Consensus         2 ~~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~R   63 (76)
                      ++|++|++++.++++++|.+|+++++.-++.+   .|.+||.||+||.|++.++.+|+||++
T Consensus        17 v~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~---~~~lkY~Dedgd~v~i~sD~Dl~~ai~   75 (85)
T d1ip9a_          17 FYYKDDIFALMLKGDTTYKELRSKIAPRIDTD---NFKLQTKLFDGSGEEIKTDSQVSNIIQ   75 (85)
T ss_dssp             ECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS---CEEEEECCSSSCCSCCCSHHHHHHHHH
T ss_pred             EEECCcEEEEEeCCCCCHHHHHHHHHHHhCCC---ceEEEEEcCCCCEEEEeCHHHHHHHHH
Confidence            58999999999999999999999999988754   699999999999999999999999997

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.2e-14  Score=88.83  Aligned_cols=68  Identities=25%  Similarity=0.391  Sum_probs=59.0

Q ss_pred             ccccCceEEEec--CCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCce
Q psy5166           2 YLFSDEVFITYI--KPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPEL   73 (76)
Q Consensus         2 ~~~~gdi~~~~~--~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL   73 (76)
                      +.|+||+.++.+  +...+|++|..+++..|+++.   |++||+|+|||+|++++|.||+||+++..- ....|
T Consensus         9 vtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~~---~~lkY~Ddd~e~v~l~~d~dl~E~~~~a~~-~~~~i   78 (85)
T d2bkfa1           9 VTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT---IQIKYLDEENEEVSINSQGEYEEALKMAVK-QGNQL   78 (85)
T ss_dssp             EEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS---EEEEEECTTSCEEEECSHHHHHHHHHHHHH-TTTEE
T ss_pred             EEECCceEEEEecCCCCCcHHHHHHHHHHhcCccc---ceEEEEcCCCCEEEEecHHHHHHHHHHHhc-CCCEE
Confidence            679999988765  466899999999999999973   999999999999999999999999999764 33444

>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Cell division control protein 24, CDC24, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=3.3e-05  Score=47.27  Aligned_cols=70  Identities=20%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             CceEEEecCCCCChHHHHHHHHHhhcCCCC----CeeeEEeeccCCCccccCcHHHHHHHHhhhhhCCCCceec
Q psy5166           6 DEVFITYIKPDITYDRLQEEVKEMCKFSTD----QVFTVKWVDEEGDPCLISTQMELEEAIRLYEVNHEPELVI   75 (76)
Q Consensus         6 gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~----q~fT~kwvDeEGDPctiSsq~ELeEA~RL~elnkdseL~i   75 (76)
                      .|+++.-+..+|+|++|.+++..-...-..    ..-.+||.||+||-.+|.|+.....|+...+-+.+..|+|
T Consensus         1 sd~fTLvV~~~i~f~~L~~kI~~Kia~~~~~~~~~~~rlrY~DeDGD~V~i~sddd~~~a~~~~~e~~~~~L~i   74 (77)
T d1pqsa_           1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLNI   74 (77)
T ss_dssp             CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHHHHCCCEEEE
T ss_pred             CceEEEEEEcCcCHHHHHHHHHHHHHhccCCCCCccceEEEEcCCCCEEEEeccchHHHHHHHHHhcccceEEE
Confidence            378899999999999999998765433211    1237999999999999999999999998877777776665

>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen activated protein kinase kinase 5, Map2k5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00034  Score=44.70  Aligned_cols=57  Identities=12%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             eEEEecC--CCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhh
Q psy5166           8 VFITYIK--PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYE   66 (76)
Q Consensus         8 i~~~~~~--~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~e   66 (76)
                      .+-..++  +.++|.++.+.++++..  .+.+-..+|-||+||-+||-|+.||+-.|..|.
T Consensus        25 ~vDw~V~~~~~l~F~dvL~~i~q~~p--~at~taFEYEDEdGDRITVRSDEEl~AMisyy~   83 (105)
T d2npta1          25 AVDWTVHSGPQLLFRDVLDVIGQVLP--EATTTAFEYEDEDGDRITVRSDEEMKAMLSYYY   83 (105)
T ss_dssp             EEEEEECC--CCCHHHHHHHHHHHST--TSCCSEEEEECTTSCEEEECSHHHHHHHHHHHH
T ss_pred             eeeeeecCCceeeHHHHHHHHHHhcc--cccccceeeccccCCEeEEccHHHHHHHHHHHH
Confidence            3333444  58999999999999987  445667789999999999999999998887663

>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 3, MEKK 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.003  Score=38.55  Aligned_cols=61  Identities=16%  Similarity=0.300  Sum_probs=51.5

Q ss_pred             cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166           3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN   68 (76)
Q Consensus         3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln   68 (76)
                      -|+|.-+|.-+..++.|++|..+++..|+.    +..+.+...| =-+-+.+|.+|+-|+.|...+
T Consensus         8 E~~gEkRIi~f~RPv~~~dl~~kv~~afGq----~ldl~y~n~E-l~IPl~~Q~DLDkAvellDrs   68 (80)
T d2c60a1           8 EHNGERRIIAFSRPVKYEDVEHKVTTVFGQ----PLDLHYMNNE-LSILLKNQDDLDKAIDILDRS   68 (80)
T ss_dssp             EETTEEEEEEECSSCCHHHHHHHHHHHHSS----CCEEEEECSS-CEEECCSHHHHHHHHHHHHHC
T ss_pred             EecCceEEEecCCCccHHHHHHHHHHHhCC----eeeeEEecCe-EEEecccHHHHHHHHHHHccC
Confidence            489999999999999999999999999975    4677887543 446677999999999988654

>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 2, MEKK 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0036  Score=38.31  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             cccCceEEEecCCCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhhhhhC
Q psy5166           3 LFSDEVFITYIKPDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRLYEVN   68 (76)
Q Consensus         3 ~~~gdi~~~~~~~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL~eln   68 (76)
                      -|+|.-+|.-+..++.|++|..|++..|+.    +..+.+...| =-+-+.+|.+|+-|+.|...+
T Consensus         8 E~~gEkRIi~f~RPv~~~dl~~kv~~afGq----~ldl~y~n~E-L~IPl~~Q~DLDkAvellDrs   68 (82)
T d2nptb1           8 EHRGEKRILQFPRPVKLEDLRSKAKIAFGQ----SMDLHYTNNE-LVIPLTTQDDLDKAVELLDRS   68 (82)
T ss_dssp             EETTEEEEEEECSSCCHHHHHHHHHHHHTS----CEEEEEEETT-EEEECCCHHHHHHHHHHHHHC
T ss_pred             EecCceEEEecCCCccHHHHHHHHHHHhCC----eeeEEEecCe-EEEecccHHHHHHHHHHHccC
Confidence            489999999999999999999999999975    5678887543 455677999999999998654

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.093  Score=33.04  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=41.3

Q ss_pred             CCCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHhh
Q psy5166          15 PDITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIRL   64 (76)
Q Consensus        15 ~~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~RL   64 (76)
                      ...+|.+|..-||+.+.-.   -+++-+.|-|||-+.+-++.+++=.++=
T Consensus        29 ~~P~ykdLl~lmr~~f~~~---dIaLNYrD~eGDLIRllddeDv~LMv~~   75 (105)
T d1oeyj_          29 STPLLKDLLELTRREFQRE---DIALNYRDAEGDLVRLLSDEDVALMVRQ   75 (105)
T ss_dssp             CCCCHHHHHHHHHHHHCCS---SEEEEEECTTSCEEECCSHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHhccc---eeEeeeecCCCCEEEEcchhhHHHHHHH
Confidence            3458999999999999876   5899999999999999999999877754

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.3  Score=29.39  Aligned_cols=60  Identities=12%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             cccCceEEEecCC--CCChHHHHHHHHHhhcCCCCCeeeEEeeccCCCccccCcHHHHHHHHh
Q psy5166           3 LFSDEVFITYIKP--DITYDRLQEEVKEMCKFSTDQVFTVKWVDEEGDPCLISTQMELEEAIR   63 (76)
Q Consensus         3 ~~~gdi~~~~~~~--~i~~e~L~~e~rd~c~~~~~q~fT~kwvDeEGDPctiSsq~ELeEA~R   63 (76)
                      .|..+.+++|++.  .-+||+++.-+..+=.+.+- +|++.|.|-.||-.-|.-+.-+.-|+.
T Consensus         8 KFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l~~~-~f~i~Y~D~hgDLLPINNDdNf~kA~~   69 (82)
T d1wmhb_           8 KFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGL-DVLLGYTDAHGDLLPLTNDDSLHRALA   69 (82)
T ss_dssp             EETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTC-CCEEEEECTTSCEEECCSHHHHHHHTT
T ss_pred             ccCceEEEeeeccccccCHHHHHHHHHHHcCCCCC-cEEEEEecCCCCcccccCchHHHHHHH
Confidence            4777888999884  45999999999999999665 899999999999999999888877763

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=81.51  E-value=0.45  Score=23.79  Aligned_cols=18  Identities=22%  Similarity=0.514  Sum_probs=15.1

Q ss_pred             cHHHHHHHHhhhhhCCCC
Q psy5166          54 TQMELEEAIRLYEVNHEP   71 (76)
Q Consensus        54 sq~ELeEA~RL~elnkds   71 (76)
                      |+.||.||||++--+++-
T Consensus         1 seeel~eAF~~FDkDg~G   18 (33)
T d2hf5a1           1 SEEEIREAFRVFDKDGNG   18 (33)
T ss_dssp             CHHHHHHHHHHHSSSCCS
T ss_pred             CHHHHHHHHHHhCCCCCC
Confidence            578999999999877764