Psyllid ID: psy5190

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MSQNKKPAVGEIHEVDLREDYSPVGVNIPPPHPTSLDLSHTMAPMSFPTSPSGNSEGNPKSPVSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQNSMLYSAEH
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccc
cccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHEEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccccccccccc
msqnkkpavgeihevdlredyspvgvnippphptsldlshtmapmsfptspsgnsegnpkspvskiesiknwgisTYKCTRQIMYEKlgkstrtvdsdlKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSnvdsncshLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAyfsgnepglQATLKQFNiktnkipsqnsmlysaeh
msqnkkpavgeihevdlredyspvGVNIPPPHPTSLDLSHTMAPMSFPTSPSGNSEGNPKSpvskiesiknwgisTYKCTRQIMYEKLgkstrtvdsdLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIktnkipsqnsmlysaeh
MSQNKKPAVGEIHEVDLREDYSPVGVNIPPPHPTSLDLSHTMAPMSFPTSPSGNSEGNPKSPVSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQNSMLYSAEH
*******************************************************************SIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQ****LQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNI*****************
***********************************************************************WGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSET**N*****EILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTD********************AQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFN******************
*********GEIHEVDLREDYSPVGVNIPPPHPTSLDLSHTMAPMSF****************SKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQNSMLYSAEH
*******************************************************EGNPKSPVSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTN**************
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MSQNKKPAVGEIHEVDLREDYSPVGVNIPPPHPTSLDLSHTMAPMSFPTSPSGNSEGNPKSPVSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHxxxxxxxxxxxxxxxxxxxxxVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQNSMLYSAEH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q6AY65341 Arfaptin-2 OS=Rattus norv yes N/A 0.787 0.674 0.515 2e-67
Q8K221341 Arfaptin-2 OS=Mus musculu yes N/A 0.787 0.674 0.515 2e-67
P53365341 Arfaptin-2 OS=Homo sapien yes N/A 0.787 0.674 0.507 1e-66
Q3ZCL5341 Arfaptin-2 OS=Bos taurus yes N/A 0.722 0.618 0.529 6e-66
P53367373 Arfaptin-1 OS=Homo sapien no N/A 0.739 0.579 0.508 7e-63
Q9JHU5366 Arfaptin-1 OS=Rattus norv no N/A 0.835 0.666 0.459 8e-61
P34445307 Uncharacterized protein F yes N/A 0.732 0.697 0.301 1e-26
Q2T9M1417 PRKCA-binding protein OS= no N/A 0.5 0.350 0.240 5e-07
Q9EP80416 PRKCA-binding protein OS= no N/A 0.5 0.350 0.240 5e-07
Q4R7Q5415 PRKCA-binding protein OS= N/A N/A 0.534 0.375 0.245 1e-06
>sp|Q6AY65|ARFP2_RAT Arfaptin-2 OS=Rattus norvegicus GN=Arfip2 PE=2 SV=1 Back     alignment and function desciption
 Score =  256 bits (653), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 132/256 (51%), Positives = 171/256 (66%), Gaps = 26/256 (10%)

Query: 46  SFPTSPSGNSEGNPKSPVS-KIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSD------ 98
           S  TSPSG  +   +     K + +K WGI+TYKCT+Q++ E+ G+ +RTVD +      
Sbjct: 72  SHSTSPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIE 131

Query: 99  ------------------LKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRN 140
                             L + +  +   Q  LG+AFADL+QKSPELQEEF  N+ETQ+ 
Sbjct: 132 LLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKL 191

Query: 141 LTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSN 200
           L   GE LL A+N FVSS+NTL  KT+EDTL+TV+QYE AR+EYDAYRTDLE L     +
Sbjct: 192 LCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD 251

Query: 201 VDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFS 260
             +    L+ AQ  FQTHR+ +EKLR DV +KL+FL+EN+IKVMHKQLLLFHNA+SAYF+
Sbjct: 252 AGTR-GRLESAQATFQTHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFA 310

Query: 261 GNEPGLQATLKQFNIK 276
           GN+  L+ TL+QFNIK
Sbjct: 311 GNQKQLEQTLQQFNIK 326
Putative target protein of ADP-ribosylation factor. Involved in membrane ruffling.
Rattus norvegicus (taxid: 10116)
>sp|Q8K221|ARFP2_MOUSE Arfaptin-2 OS=Mus musculus GN=Arfip2 PE=2 SV=2 Back     alignment and function description
>sp|P53365|ARFP2_HUMAN Arfaptin-2 OS=Homo sapiens GN=ARFIP2 PE=1 SV=1 Back     alignment and function description
>sp|Q3ZCL5|ARFP2_BOVIN Arfaptin-2 OS=Bos taurus GN=ARFIP2 PE=2 SV=1 Back     alignment and function description
>sp|P53367|ARFP1_HUMAN Arfaptin-1 OS=Homo sapiens GN=ARFIP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9JHU5|ARFP1_RAT Arfaptin-1 OS=Rattus norvegicus GN=Arfip1 PE=2 SV=1 Back     alignment and function description
>sp|P34445|YL87_CAEEL Uncharacterized protein F54C8.7 OS=Caenorhabditis elegans GN=F54C8.7 PE=2 SV=3 Back     alignment and function description
>sp|Q2T9M1|PICK1_BOVIN PRKCA-binding protein OS=Bos taurus GN=PICK1 PE=2 SV=1 Back     alignment and function description
>sp|Q9EP80|PICK1_RAT PRKCA-binding protein OS=Rattus norvegicus GN=Pick1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R7Q5|PICK1_MACFA PRKCA-binding protein OS=Macaca fascicularis GN=PICK1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
350405666330 PREDICTED: arfaptin-2-like [Bombus impat 0.941 0.833 0.569 5e-89
48106111330 PREDICTED: arfaptin-2-like [Apis mellife 0.941 0.833 0.569 6e-89
380013779330 PREDICTED: arfaptin-2-like [Apis florea] 0.941 0.833 0.569 6e-89
340711138330 PREDICTED: LOW QUALITY PROTEIN: arfaptin 0.941 0.833 0.566 1e-88
383852316338 PREDICTED: arfaptin-2-like [Megachile ro 0.938 0.810 0.570 2e-88
332027571330 Arfaptin-2 [Acromyrmex echinatior] 0.938 0.830 0.561 7e-88
307189242352 Arfaptin-2 [Camponotus floridanus] 0.938 0.778 0.561 1e-87
307199023330 Arfaptin-2 [Harpegnathos saltator] 0.938 0.830 0.555 1e-86
156554865342 PREDICTED: arfaptin-2-like [Nasonia vitr 0.941 0.804 0.535 7e-85
242014615323 Arfaptin-2, putative [Pediculus humanus 0.835 0.755 0.603 1e-84
>gi|350405666|ref|XP_003487511.1| PREDICTED: arfaptin-2-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  333 bits (854), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 185/325 (56%), Positives = 217/325 (66%), Gaps = 50/325 (15%)

Query: 12  IHEV-----DLREDYSPVGVNIPPPH------------PTSLDLS-----HTMAPMSFPT 49
           IHE+      L +  S V    PPPH            P +++L+       M+    P 
Sbjct: 5   IHEMLKDAPSLNDSDSAVHSGTPPPHVPNNCNNENQPRPATINLTLGSPISQMSVTVSPN 64

Query: 50  SPSGNSEGNP-KSPVSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLK-------- 100
           +P  N +    ++  SKIESIKNW ISTYKCTRQ+MYEKLGK++RTVDS+L+        
Sbjct: 65  TPIQNGDTQTMRTAQSKIESIKNWSISTYKCTRQLMYEKLGKTSRTVDSELETQIELLRD 124

Query: 101 -----------SRVLVIFF-----LQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGT 144
                      SR L   F      Q  LGEAF++LAQKSPELQEEFL NSETQRNLT  
Sbjct: 125 TQRKYCNVLRLSRALASHFHHVVQTQHALGEAFSELAQKSPELQEEFLYNSETQRNLTKN 184

Query: 145 GEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSN 204
           GE LL ALN FVSSVNTLCNKTIEDTL TVRQYE AR+EYDAYRTDLE L QVT N  SN
Sbjct: 185 GETLLGALNFFVSSVNTLCNKTIEDTLFTVRQYETARIEYDAYRTDLEALAQVTKNDSSN 244

Query: 205 CSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEP 264
            + L+ AQ N++ H++NFEKLR+DV +KL+FLDENRIKVMHKQLLLFHNA+SAYFSGN+ 
Sbjct: 245 AARLEAAQANYEEHKQNFEKLRSDVSIKLKFLDENRIKVMHKQLLLFHNAVSAYFSGNQT 304

Query: 265 GLQATLKQFNIKTNKIPSQNSMLYS 289
            L+ATLKQFNI   K+ S NS L S
Sbjct: 305 ALEATLKQFNI---KVKSPNSSLPS 326

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|48106111|ref|XP_396054.1| PREDICTED: arfaptin-2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380013779|ref|XP_003690926.1| PREDICTED: arfaptin-2-like [Apis florea] Back     alignment and taxonomy information
>gi|340711138|ref|XP_003394137.1| PREDICTED: LOW QUALITY PROTEIN: arfaptin-2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383852316|ref|XP_003701674.1| PREDICTED: arfaptin-2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332027571|gb|EGI67644.1| Arfaptin-2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307189242|gb|EFN73690.1| Arfaptin-2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307199023|gb|EFN79747.1| Arfaptin-2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|156554865|ref|XP_001606742.1| PREDICTED: arfaptin-2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242014615|ref|XP_002427982.1| Arfaptin-2, putative [Pediculus humanus corporis] gi|212512481|gb|EEB15244.1| Arfaptin-2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
FB|FBgn0037884355 Arfip "Arfaptin" [Drosophila m 0.660 0.543 0.592 2e-75
RGD|708401366 Arfip1 "ADP-ribosylation facto 0.654 0.521 0.517 1.3e-59
UNIPROTKB|G3V7E9373 Arfip1 "Arfaptin-1" [Rattus no 0.654 0.512 0.517 1.3e-59
MGI|MGI:1924182341 Arfip2 "ADP-ribosylation facto 0.695 0.595 0.566 2.4e-53
RGD|1303204341 Arfip2 "ADP-ribosylation facto 0.695 0.595 0.566 2.4e-53
UNIPROTKB|P53365341 ARFIP2 "Arfaptin-2" [Homo sapi 0.695 0.595 0.561 8e-53
UNIPROTKB|E2QV23341 ARFIP2 "Uncharacterized protei 0.695 0.595 0.561 8e-53
UNIPROTKB|Q3ZCL5341 ARFIP2 "Arfaptin-2" [Bos tauru 0.695 0.595 0.561 8e-53
UNIPROTKB|F1RMN9341 ARFIP2 "Uncharacterized protei 0.695 0.595 0.561 8e-53
ZFIN|ZDB-GENE-050417-131355 arfip2b "ADP-ribosylation fact 0.640 0.526 0.536 4.6e-50
FB|FBgn0037884 Arfip "Arfaptin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 586 (211.3 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
 Identities = 119/201 (59%), Positives = 149/201 (74%)

Query:    82 QIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNL 141
             Q  Y  + + TR   S  +  V+     Q  L ++FADLAQK+PELQ+EF CNSETQRNL
Sbjct:   154 QRKYLSILRLTRAFSSHFQHVVVT----QHALADSFADLAQKNPELQKEFTCNSETQRNL 209

Query:   142 TGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNV 201
             T  GE+LLNALN F+SSVNTLCNKTI+DTL+T+RQYE AR+E+DAYR DLE        +
Sbjct:   210 TKNGELLLNALNFFISSVNTLCNKTIDDTLLTIRQYETARIEFDAYRMDLE---NTKPEL 266

Query:   202 DSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSG 261
               +   L+E QR++  H+E +EKLR+DV VK++FLDENRIKVMHKQL+L HNAI+AYFSG
Sbjct:   267 TPSAVALEETQRSYAQHKEQYEKLRSDVAVKMQFLDENRIKVMHKQLILLHNAIAAYFSG 326

Query:   262 NEPGLQATLKQFNIKTNKIPS 282
             N   L++TLKQFNIK  K P+
Sbjct:   327 NAMALESTLKQFNIKL-KSPN 346
GO:0019904 "protein domain specific binding" evidence=IEA
GO:0048149 "behavioral response to ethanol" evidence=IMP
RGD|708401 Arfip1 "ADP-ribosylation factor interacting protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7E9 Arfip1 "Arfaptin-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1924182 Arfip2 "ADP-ribosylation factor interacting protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1303204 Arfip2 "ADP-ribosylation factor interacting protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P53365 ARFIP2 "Arfaptin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QV23 ARFIP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCL5 ARFIP2 "Arfaptin-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RMN9 ARFIP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-131 arfip2b "ADP-ribosylation factor interacting protein 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P34445YL87_CAEELNo assigned EC number0.30120.73280.6970yesN/A
Q3ZCL5ARFP2_BOVINNo assigned EC number0.52960.72260.6187yesN/A
Q8K221ARFP2_MOUSENo assigned EC number0.51560.78760.6744yesN/A
P53365ARFP2_HUMANNo assigned EC number0.50780.78760.6744yesN/A
Q6AY65ARFP2_RATNo assigned EC number0.51560.78760.6744yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
cd07660201 cd07660, BAR_Arfaptin, The Bin/Amphiphysin/Rvs (BA 2e-85
smart01015217 smart01015, Arfaptin, Arfaptin-like domain 5e-71
pfam06456229 pfam06456, Arfaptin, Arfaptin-like domain 1e-60
cd00011203 cd00011, BAR_Arfaptin_like, The Bin/Amphiphysin/Rv 1e-48
cd07659215 cd07659, BAR_PICK1, The Bin/Amphiphysin/Rvs (BAR) 7e-13
cd07307194 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain 1e-11
cd07661204 cd07661, BAR_ICA69, The Bin/Amphiphysin/Rvs (BAR) 4e-06
>gnl|CDD|153344 cd07660, BAR_Arfaptin, The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin Back     alignment and domain information 
 Score =  254 bits (651), Expect = 2e-85
 Identities = 114/189 (60%), Positives = 142/189 (75%), Gaps = 5/189 (2%)

Query: 85  YEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGT 144
           YE + +  R + S     +      Q+ LG+AFADL+QKSPELQEEF  N+ETQ+ L   
Sbjct: 18  YESVLRLARALASQFYQMLQT----QKALGDAFADLSQKSPELQEEFTYNAETQKLLCKN 73

Query: 145 GEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSN 204
           GE LL ALN FVSS+NTL NKT+EDTL+TV+QYE+AR+EYDAYR DLE  L +     + 
Sbjct: 74  GETLLGALNFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLE-ALNLGPRDAAT 132

Query: 205 CSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEP 264
            + L+EAQR FQ H++ +EKLRNDV VKL+FL+EN++KVMHKQLLLFHNAISAYFSGN+ 
Sbjct: 133 SARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQK 192

Query: 265 GLQATLKQF 273
            L+ TLKQF
Sbjct: 193 QLEQTLKQF 201

The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is implicated in Huntington disease. Arfaptins are single-domain proteins with a BAR-like structure. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 201
>gnl|CDD|214974 smart01015, Arfaptin, Arfaptin-like domain Back     alignment and domain information
>gnl|CDD|203455 pfam06456, Arfaptin, Arfaptin-like domain Back     alignment and domain information
>gnl|CDD|153270 cd00011, BAR_Arfaptin_like, The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes Back     alignment and domain information
>gnl|CDD|153343 cd07659, BAR_PICK1, The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1 Back     alignment and domain information
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature Back     alignment and domain information
>gnl|CDD|153345 cd07661, BAR_ICA69, The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
KOG3876|consensus341 100.0
PF06456229 Arfaptin: Arfaptin-like domain; InterPro: IPR01050 100.0
cd07660201 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain 100.0
cd00011203 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do 100.0
cd07659215 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
cd07661204 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of 100.0
KOG3651|consensus429 100.0
KOG3891|consensus 436 100.0
smart00721239 BAR BAR domain. 99.68
cd07307194 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri 99.63
PF03114229 BAR: BAR domain; InterPro: IPR004148 Endocytosis a 99.47
cd07616229 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do 98.85
cd07617220 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do 98.68
cd07594229 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom 98.66
cd07588211 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma 98.6
cd07591224 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o 98.41
cd07637200 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of 98.37
cd07600242 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of 98.37
cd07590225 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B 98.36
cd07639200 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 98.29
cd07603200 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of 98.22
cd07606202 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain 98.22
PF09325236 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp 98.17
cd07612211 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B 98.14
cd07601215 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A 98.13
cd07595244 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) 98.12
cd07611211 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) 98.12
cd07604215 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of 98.11
cd07593215 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom 98.09
cd07624200 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o 98.09
cd07638200 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of 98.07
cd07623224 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of 98.05
cd07592223 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom 97.97
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 97.96
cd07602207 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR 97.92
cd07642215 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of 97.89
cd07618246 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of 97.89
cd07614223 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do 97.86
cd07636207 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G 97.85
cd07613223 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do 97.81
cd07634207 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai 97.8
cd07596218 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So 97.74
cd07635207 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of 97.74
cd07663218 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S 97.72
cd07628185 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of 97.63
cd07641215 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 97.6
cd07648261 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am 97.58
KOG3771|consensus 460 97.55
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 97.54
cd07615223 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do 97.54
cd07664234 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S 97.54
cd07619248 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of 97.52
cd07621219 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of 97.44
cd07665234 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S 97.43
cd07662218 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S 97.42
cd07599216 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o 97.38
cd07630198 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain 97.35
cd07651236 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology 97.35
cd07633207 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of 97.35
cd07598211 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of 97.35
cd07631215 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of 97.32
PF08397219 IMD: IRSp53/MIM homology domain; InterPro: IPR0136 97.25
cd07673269 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A 97.24
cd07672240 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin 97.15
PF10455289 BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr 97.14
cd07655258 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/ 97.1
cd07640213 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of 97.06
cd07622201 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S 97.01
cd07647239 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ 96.95
cd07626199 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain 96.94
cd07625230 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of 96.92
cd07649233 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am 96.79
KOG1118|consensus 366 96.78
cd07632215 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of 96.58
cd07629187 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of 96.47
cd07671242 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin 96.42
KOG0521|consensus 785 96.39
cd07667240 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of 96.38
cd07650228 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and 96.26
KOG3725|consensus375 95.95
cd07680258 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin 95.94
cd07646232 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th 95.46
cd07666243 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S 95.4
cd07620257 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of 95.39
cd07681258 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin 94.69
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 94.62
cd07685237 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amp 94.46
cd07679258 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin 94.08
PF10456237 BAR_3_WASP_bdg: WASP-binding domain of Sorting nex 94.0
cd07605223 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5 93.87
cd07676253 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A 92.59
cd07637200 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of 92.1
cd07589195 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of 92.08
cd07645226 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as 91.55
cd07668210 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of S 91.17
cd07610191 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or 90.98
KOG2273|consensus503 90.83
cd07607209 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai 90.57
cd07669207 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of 89.82
cd07686234 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp 89.58
cd07670207 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of 88.57
cd07661204 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of 87.82
cd07657237 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin 87.65
cd07602207 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR 86.38
cd07636207 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G 86.31
PF13805271 Pil1: Eisosome component PIL1; PDB: 3PLT_B. 85.16
cd07633207 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of 85.02
cd07658239 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin 84.29
cd07604215 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of 83.93
cd07675252 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/ 83.04
cd07639200 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 80.3
>KOG3876|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.4e-82  Score=584.77  Aligned_cols=265  Identities=53%  Similarity=0.786  Sum_probs=246.1

Q ss_pred             ccCCCCCCCCcccccCCCCCCCCCCCCCC---CCCCCCCCchhhhhhhhhcccchhHHHHHHHHHHhCCCCccCchhhhH
Q psy5190          25 GVNIPPPHPTSLDLSHTMAPMSFPTSPSG---NSEGNPKSPVSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKS  101 (292)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~~k~W~~~tyk~TKQ~l~EklGk~~~TvD~ELea  101 (292)
                      +.|.+-+.+..++.++...|.++|++.++   .++-.+.+..+|+|++|+|||+|||||||+|.|+|||++||||+|||+
T Consensus        50 s~G~~~~k~s~~~~r~~r~p~tt~t~s~P~~~~~~I~~~~aa~K~es~kkWsi~TyKctkQillEklGk~~rTVD~ElEa  129 (341)
T KOG3876|consen   50 SMGLLSKKNSIIPYRQNRQPLTTPTPSGPLEKCDEIDRAQAAEKVESVKKWSINTYKCTKQILLEKLGKGSRTVDLELEA  129 (341)
T ss_pred             ecccCCCCCceeecccCCCCCCCCCCCCCcccCchhhhhHHHHHHHHHHhccccchhhHHHHHHHHhcCCccccCHHHHH
Confidence            34457778888999998777776544333   244555689999999999999999999999999999999999999999


Q ss_pred             HH-------------------H-----HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHH
Q psy5190         102 RV-------------------L-----VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVS  157 (292)
Q Consensus       102 kI-------------------l-----~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~s  157 (292)
                      ||                   |     +++++|++|||.|++||+++|||+++|++|+|+||.+++||++|+++|+||++
T Consensus       130 Qie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~elq~eft~nseTqr~l~kngetLl~alnfFIs  209 (341)
T KOG3876|consen  130 QIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSPELQEEFTYNSETQRLLGKNGETLLGALNFFIS  209 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHhCcCHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99                   1     79999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhc
Q psy5190         158 SVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLD  237 (292)
Q Consensus       158 dl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLd  237 (292)
                      +|||+|||+|+||++||++||.||+||||||+|++++...|++ +....+++.+|+.|+++|++|+|||+||.+||+||+
T Consensus       210 SvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~-~~t~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLe  288 (341)
T KOG3876|consen  210 SVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLGPRD-ALTKNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLE  288 (341)
T ss_pred             HHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccc-cccccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887 346788999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccCCCCCCCccccc
Q psy5190         238 ENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQNSMLYSAE  291 (292)
Q Consensus       238 enRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~~~~~~~~~~~~~~~~  291 (292)
                      |||++|||+||.+||||++|||+||+.+|+++++||+|+++ -|+...|+|++|
T Consensus       289 ENrIkVmh~QL~llhnAiaAYfsGNak~LE~tlkqf~iklk-pp~a~~pswlee  341 (341)
T KOG3876|consen  289 ENRIKVMHKQLELLHNAIAAYFSGNAKQLEQTLKQFNIKLK-PPGAFIPSWLEE  341 (341)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhceecC-CCCCCcchhccC
Confidence            99999999999999999999999999999999999999999 578899999987

>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules Back     alignment and domain information
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin Back     alignment and domain information
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1 Back     alignment and domain information
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa Back     alignment and domain information
>KOG3651|consensus Back     alignment and domain information
>KOG3891|consensus Back     alignment and domain information
>smart00721 BAR BAR domain Back     alignment and domain information
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature Back     alignment and domain information
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment Back     alignment and domain information
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1 Back     alignment and domain information
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2 Back     alignment and domain information
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B Back     alignment and domain information
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins Back     alignment and domain information
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins Back     alignment and domain information
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3 Back     alignment and domain information
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins Back     alignment and domain information
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 Back     alignment and domain information
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 Back     alignment and domain information
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins Back     alignment and domain information
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC) Back     alignment and domain information
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking Back     alignment and domain information
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2 Back     alignment and domain information
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins Back     alignment and domain information
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins Back     alignment and domain information
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II Back     alignment and domain information
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins Back     alignment and domain information
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins Back     alignment and domain information
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 Back     alignment and domain information
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2 Back     alignment and domain information
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins Back     alignment and domain information
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2 Back     alignment and domain information
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1 Back     alignment and domain information
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2 Back     alignment and domain information
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase Back     alignment and domain information
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1 Back     alignment and domain information
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like Back     alignment and domain information
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins Back     alignment and domain information
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2 Back     alignment and domain information
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 Back     alignment and domain information
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p Back     alignment and domain information
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1 Back     alignment and domain information
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins Back     alignment and domain information
>KOG3771|consensus Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3 Back     alignment and domain information
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 Back     alignment and domain information
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2 Back     alignment and domain information
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 Back     alignment and domain information
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 Back     alignment and domain information
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins Back     alignment and domain information
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins Back     alignment and domain information
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins Back     alignment and domain information
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1 Back     alignment and domain information
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) Back     alignment and domain information
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1 Back     alignment and domain information
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family Back     alignment and domain information
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein Back     alignment and domain information
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2 Back     alignment and domain information
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment Back     alignment and domain information
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins Back     alignment and domain information
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3 Back     alignment and domain information
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 Back     alignment and domain information
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins Back     alignment and domain information
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins Back     alignment and domain information
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p Back     alignment and domain information
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7 Back     alignment and domain information
>KOG1118|consensus Back     alignment and domain information
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2 Back     alignment and domain information
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p Back     alignment and domain information
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1 Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 Back     alignment and domain information
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein Back     alignment and domain information
>KOG3725|consensus Back     alignment and domain information
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) Back     alignment and domain information
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53 Back     alignment and domain information
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 Back     alignment and domain information
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1 Back     alignment and domain information
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3) Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase Back     alignment and domain information
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2) Back     alignment and domain information
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain Back     alignment and domain information
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17 Back     alignment and domain information
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3 Back     alignment and domain information
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein Back     alignment and domain information
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1 Back     alignment and domain information
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 Back     alignment and domain information
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes Back     alignment and domain information
>KOG2273|consensus Back     alignment and domain information
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins Back     alignment and domain information
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 Back     alignment and domain information
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase Back     alignment and domain information
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 Back     alignment and domain information
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa Back     alignment and domain information
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases Back     alignment and domain information
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins Back     alignment and domain information
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase Back     alignment and domain information
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B Back     alignment and domain information
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1 Back     alignment and domain information
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) Back     alignment and domain information
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins Back     alignment and domain information
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like Back     alignment and domain information
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1i49_A224 Crystal Structure Analysis Of Arfaptin Length = 224 2e-57
4dcn_C198 Crystal Structure Analysis Of The Arfaptin2 Bar Dom 3e-53
>pdb|1I49|A Chain A, Crystal Structure Analysis Of Arfaptin Length = 224 Back     alignment and structure 
Iteration: 1

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Query: 110 QQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIED 169
           Q  LG+AFADL+QKSPELQEEF  N+ETQ+ L   GE LL A+N FVSS+NTL  KT+ED
Sbjct: 44  QHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMED 103
Query: 170 TLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV 229
           TL+TV+QYE AR+EYDAYRTDLE L     +  +    L+ AQ  FQ HR+ +EKLR DV
Sbjct: 104 TLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTR-GRLESAQATFQAHRDKYEKLRGDV 162
Query: 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIK 276
            +KL+FL+EN+IKVMHKQLLLFHNA+SAYF+GN+  L+ TL+QFNIK
Sbjct: 163 AIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIK 209
>pdb|4DCN|C Chain C, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 198 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1i4d_A224 Arfaptin 2, partner of RAC1; coiled coil, G-protei 5e-51
1uru_A244 Amphiphysin; endocytosis, coiled-coil, membrane cu 5e-12
2fic_A251 Bridging integrator 1; BAR domain, homodimer, coil 7e-11
4a3a_A243 Amphiphysin; structural genomics, invagination, kn 2e-09
4avm_A237 Bridging integrator 2; protein binding, plasma mem 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Length = 224 Back     alignment and structure
 Score =  166 bits (422), Expect = 5e-51
 Identities = 107/174 (61%), Positives = 132/174 (75%), Gaps = 1/174 (0%)

Query: 110 QQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIED 169
           Q  LG+AFADL+QKSPELQEEF  N+ETQ+ L   GE LL A+N FVSS+NTL  KT+ED
Sbjct: 44  QHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMED 103

Query: 170 TLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV 229
           TL+TV+QYE AR+EYDAYRTDLE  L +          L+ AQ  FQ HR+ +EKLR DV
Sbjct: 104 TLMTVKQYEAARLEYDAYRTDLE-ELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDV 162

Query: 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQ 283
            +KL+FL+EN+IKVMHKQLLLFHNA+SAYF+GN+  L+ TL+QFNIK     ++
Sbjct: 163 AIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAE 216
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Length = 244 Back     alignment and structure
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Length = 251 Back     alignment and structure
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
1i4d_A224 Arfaptin 2, partner of RAC1; coiled coil, G-protei 100.0
1uru_A244 Amphiphysin; endocytosis, coiled-coil, membrane cu 99.58
2fic_A251 Bridging integrator 1; BAR domain, homodimer, coil 99.43
1zww_A256 SH3-containing GRB2-like protein 2; coiled coil, t 99.04
2z0v_A240 SH3-containing GRB2-like protein 3; helix bundle, 98.99
2q12_A265 DIP13 alpha, DCC-interacting protein 13 alpha; APP 98.78
4avm_A237 Bridging integrator 2; protein binding, plasma mem 98.62
2q13_A 385 DCC-interacting protein 13 alpha; APPL1, BAR domai 98.54
4a3a_A243 Amphiphysin; structural genomics, invagination, kn 98.3
4h8s_A 407 DCC-interacting protein 13-beta; BAR domain, pleck 98.17
2v0o_A276 FCHO2, FCH domain only protein 2; lipid-binding pr 97.48
4akv_A386 Sorting nexin-33; transport protein, organelle bio 97.28
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 97.05
3i2w_A290 Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt 96.9
2efk_A301 CDC42-interacting protein 4; EFC domain, structura 96.8
2efl_A305 Formin-binding protein 1; EFC domain, structural g 96.73
3abh_A312 Pacsin2, protein kinase C and casein kinase substr 96.56
3haj_A 486 Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, 96.56
3aco_A350 Pacsin2, protein kinase C and casein kinase substr 96.52
2x3v_A337 Syndapin I, protein kinase C and casein kinase sub 96.17
3caz_A294 BAR protein; thermo-acidophilic RED ALGA, protein 96.01
2ykt_A253 Brain-specific angiogenesis inhibitor 1-associate 95.69
3m3w_A320 Pacsin3, protein kinase C and casein kinase II sub 95.47
4dyl_A 406 Tyrosine-protein kinase FES/FPS; structural genomi 93.93
3g9g_A287 Suppressor of yeast profilin deletion; SYP1, BAR d 91.66
2d1l_A253 Metastasis suppressor protein 1; IRSP53, actin bin 86.02
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Back     alignment and structure
Probab=100.00  E-value=9.7e-73  Score=511.89  Aligned_cols=200  Identities=58%  Similarity=0.851  Sum_probs=162.4

Q ss_pred             CCccCchhhhHHH--H----------------------HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhH
Q psy5190          91 STRTVDSDLKSRV--L----------------------VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGE  146 (292)
Q Consensus        91 ~~~TvD~ELeakI--l----------------------~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~  146 (292)
                      |+||||+|||+||  |                      .++++|++||++|++||+++|+++++|++||++||+|++||+
T Consensus         1 ~~rtvD~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p~l~~~f~~~~~~~r~~~k~g~   80 (224)
T 1i4d_A            1 GSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGE   80 (224)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhHH
Confidence            5899999999999  1                      799999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHH
Q psy5190         147 ILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLR  226 (292)
Q Consensus       147 ~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR  226 (292)
                      .|++||+||++|||||++||||||++||++||+|||||||||+|||+|++++++ ..++|||+++|+||+.+|+||+|||
T Consensus        81 ~Ll~~L~~f~s~l~T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~-~~~l~rve~~q~~~~~ak~kf~kLR  159 (224)
T 1i4d_A           81 TLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD-AGTRGRLESAQATFQAHRDKYEKLR  159 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHhhccccc-ccchhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999865 4589999999999999999999999


Q ss_pred             hHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccCCCCCCCcccccC
Q psy5190         227 NDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQNSMLYSAEH  292 (292)
Q Consensus       227 ~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~~~~~~~~~~~~~~~~~  292 (292)
                      +||++||||||+||||||+|||++|||||++||+||+++|++++++|||+++ .|+++.|+|+++|
T Consensus       160 ~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~~~f~i~~~-~~~~~~~s~le~~  224 (224)
T 1i4d_A          160 GDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLR-PPGAEKPSWLEEQ  224 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccC-CCCCCCCcccccC
Confidence            9999999999999999999999999999999999999999999999999996 8999999999986
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Back     alignment and structure
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Back     alignment and structure
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Back     alignment and structure
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Back     alignment and structure
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A Back     alignment and structure
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Back     alignment and structure
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} Back     alignment and structure
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} Back     alignment and structure
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Back     alignment and structure
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Back     alignment and structure
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} Back     alignment and structure
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A Back     alignment and structure
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Back     alignment and structure
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} Back     alignment and structure
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A Back     alignment and structure
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria} Back     alignment and structure
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A Back     alignment and structure
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A Back     alignment and structure
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} Back     alignment and structure
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 292
d1i4da_200 a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum 7e-28
d1urua_217 a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila 5e-15
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 7e-28
 Identities = 99/153 (64%), Positives = 118/153 (77%), Gaps = 1/153 (0%)

Query: 110 QQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIED 169
           Q  LG+AFADL+QKSPELQEEF  N+ETQ+ L   GE LL A+N FVSS+NTL  KT+ED
Sbjct: 43  QHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMED 102

Query: 170 TLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV 229
           TL+TV+QYE AR+EYDAYRTDLE L             L+ AQ  FQ HR+ +EKLR DV
Sbjct: 103 TLMTVKQYEAARLEYDAYRTDLEELSL-GPRDAGTRGRLESAQATFQAHRDKYEKLRGDV 161

Query: 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGN 262
            +KL+FL+EN+IKVMHKQLLLFHNA+SAYF+GN
Sbjct: 162 AIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGN 194
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1i4da_200 Arfaptin, Rac-binding fragment {Human (Homo sapien 99.95
d1urua_217 Amphiphysin {Fruit fly (Drosophila melanogaster) [ 99.62
d2d4ca1237 Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} 99.09
d1y2oa1248 BAP2/IRSp53 N-terminal domain {Human (Homo sapiens 98.85
d2elba1268 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 98.8
d2d4ca1237 Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} 96.78
d2efka1279 CDC42-interacting protein 4, CIP4 {Human (Homo sap 93.38
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 93.08
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 85.59
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-27  Score=196.28  Aligned_cols=175  Identities=61%  Similarity=0.903  Sum_probs=158.3

Q ss_pred             CccCchhhhHHH--H----------------------HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHH
Q psy5190          92 TRTVDSDLKSRV--L----------------------VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEI  147 (292)
Q Consensus        92 ~~TvD~ELeakI--l----------------------~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~  147 (292)
                      ++|+|.|||..+  |                      .+++.+..||+.|++++..+|++++.|..+|++++.+.+.+..
T Consensus         1 ~kT~D~e~e~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   80 (200)
T d1i4da_           1 SRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGET   80 (200)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            579999999998  1                      6889999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHh
Q psy5190         148 LLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRN  227 (292)
Q Consensus       148 Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~  227 (292)
                      +++++..++.++.+|+.+.|+++..++++|+.+|.+||+++.+++.++..+.. .....+++.++..++.+|.+|+.++.
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~-~~~~~kl~~ae~~~~~a~~~fe~~~~  159 (200)
T d1i4da_          81 LLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD-AGTRGRLESAQATFQAHRDKYEKLRG  159 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999877654 34557899999999999999999999


Q ss_pred             HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHH
Q psy5190         228 DVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQ  267 (292)
Q Consensus       228 DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le  267 (292)
                      |++.+|+.|.++|+.+|.++|..|+++..+||++|+++|+
T Consensus       160 ~~~~~l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~~~~le  199 (200)
T d1i4da_         160 DVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE  199 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999986
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure