Psyllid ID: psy5259

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC
Secondary Structure (PSIPRED)
ccccEEEEEccccccccHHHHHHHccccEEEEccccccccHHHHHHHcccccEEEEcccccccHHHHHHcccccEEEEEcccccccccHHHHHHcccEEccccccccHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccEEEEEEcccccHHHHHHHccEEEcHHHHHHHccEEEEEccccHHHHccccccccccccccHHHHHHHHHcccEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccHHHHHHHHHHHcEEEEcccccccccHHHHHHHHccccEEEEEccccEcHHHHccccccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccEEEEEEEEccccccHHHHHcccEEEcHHHHHHHccEEEEEccccHHHHccccHHHHccccccHHHHHHHHHcccEEEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mskpkllltrndyprvspaydilEDMFDIitypisegrmprDIFIEKLKGcsallcnphqkvdKEALDESGENLKVISTFsvghdhlhldqiksrgirvgtvgpvssdaVAEFNIGLAIAVKNLKVISTFsvghdhlhldqiksrgirvgtvgpvssdaVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDiiglngstvgIVGTElgaqlvpldtlcaqsdfIFVTCALTKDTEQLIGrkqfrggllDQEALVEFLRDkkiggagldvmipepmpadhplvqldnc
Flexible Loop (DISEMBL)
mskpkllltrndyprvspaydileDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLigrkqfrggllDQEALVEFLRDKKIGGAGLDVMipepmpadhplvqldnc
Low Complexity Region (SEG)
MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC
Disordered region (IsUnstruct)
*******LTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD********ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMI****************
Disordered Region (DISOPRED)
*SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC
Disordered Region (DISEMBL)
MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC
Disordered Region (DISPRO)
*SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q91Z53	328	Glyoxylate reductase/hydr	yes	N/A	0.782	0.701	0.332	5e-29
A1RYE4	339	Glyoxylate reductase OS=T	yes	N/A	0.877	0.761	0.290	9e-26
Q9UBQ7	328	Glyoxylate reductase/hydr	yes	N/A	0.731	0.655	0.332	3e-25
O32264	325	Probable 2-ketogluconate	yes	N/A	0.629	0.569	0.307	4e-20
O29445	527	D-3-phosphoglycerate dehy	yes	N/A	0.578	0.322	0.310	3e-19
B6YWH0	334	Glyoxylate reductase OS=T	yes	N/A	0.802	0.706	0.239	3e-19
C5A1V0	334	Glyoxylate reductase OS=T	yes	N/A	0.897	0.790	0.258	1e-18
C6DJ88	320	Glyoxylate/hydroxypyruvat	yes	N/A	0.564	0.518	0.308	2e-18
B1JH01	326	Glyoxylate/hydroxypyruvat	yes	N/A	0.568	0.512	0.288	2e-18
Q663W4	326	Glyoxylate/hydroxypyruvat	yes	N/A	0.568	0.512	0.288	2e-18

>sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 132/283 (46%), Gaps = 53/283 (18%)

Query: 35  SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94
           S+  +PR    + + G   LLC    +VDK+ LD +G NL+VIST SVG DHL LD+IK 
Sbjct: 36  SDDPIPRKDLEQGVVGAHGLLCRLSDRVDKKLLDAAGANLRVISTLSVGVDHLALDEIKK 95

Query: 95  RGIRVGTVGPVSSDAVAEFNIGLAI--------AVKNLKVISTFSVGHDHLHLDQIKSRG 146
           RGIRVG    V +DA AE  + L +        A++ +K     + G        +   G
Sbjct: 96  RGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEVK-----NGGWSSWSPLWMCGYG 150

Query: 147 IRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG--HNCIASGEWALKQTQTVISDIIGLNG 204
           +   TVG V    + +       A++RR +       + +G     Q             
Sbjct: 151 LSQSTVGIVGLGRIGQ-------AIARRLKPFGVQRFLYTGRQPRPQE------------ 191

Query: 205 STVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------R 251
                   E  A+ VP+  L A+SDFI V+C+LT DT  L  +  F             R
Sbjct: 192 ------AAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISR 245

Query: 252 GGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           G +++QE L + L   +I  AGLDV  PEP+P  HPL+ L NC
Sbjct: 246 GDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNC 288

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  117 bits (293), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 152/320 (47%), Gaps = 62/320 (19%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
           M++PK+ +TR   P   P   +L++  D++ +   +    R+  +  ++   ALLC    
Sbjct: 1   MARPKVYVTRI-IP--EPGLSMLKECCDVVVHESKDWPPSREELLRNIRDKDALLCLLTD 57

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
           K+D E +D +  NLKVIST+SVG DH+ + +   RGI V     V +DAVAEF +GL +A
Sbjct: 58  KIDAEVMD-AAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILA 116

Query: 121 VKNL-----KVIST--FSVGHDHLHLDQIKSRG-----IRVGTVGPVSSDAVAEFNIG-L 167
           V        K+I T  +    +   L   + +G     + +G +G  ++  ++ F++  L
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKIL 176

Query: 168 AIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQ 227
              + RR+                 +TVI ++                 +   LDTL  +
Sbjct: 177 YYDIERRW---------------DVETVIPNM-----------------EFTDLDTLLEK 204

Query: 228 SDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL 274
           SD + +   LTK+T  LI  ++              RG ++D EALV+ L++  I GA L
Sbjct: 205 SDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAAL 264

Query: 275 DVMIPEPMPADHPLVQLDNC 294
           DV   EP+P +HPL + DN 
Sbjct: 265 DVFEQEPLPPNHPLTKFDNV 284

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 120/268 (44%), Gaps = 53/268 (19%)

Query: 50  GCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 109
           G   LLC     VDK  LD +G NLKVIST SVG DHL LD+IK RGIRVG    V +D 
Sbjct: 51  GAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDT 110

Query: 110 VAEFNIGLAI--------AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161
            AE  + L +        A++ +K     + G        +   G+   TVG +    + 
Sbjct: 111 TAELAVSLLLTTCRRLPEAIEEVK-----NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIG 165

Query: 162 EFNIGLAIAVSRRFQQG--HNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLV 219
           +       A++RR +       + +G     +                     E  A+ V
Sbjct: 166 Q-------AIARRLKPFGVQRFLYTGRQPRPEE------------------AAEFQAEFV 200

Query: 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRD 266
               L AQSDFI V C+LT  TE L  +  F             RG +++Q+ L + L  
Sbjct: 201 STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALAS 260

Query: 267 KKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            KI  AGLDV  PEP+P +HPL+ L NC
Sbjct: 261 GKIAAAGLDVTSPEPLPTNHPLLTLKNC 288

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|O32264|TKRA_BACSU Probable 2-ketogluconate reductase OS=Bacillus subtilis (strain 168) GN=yvcT PE=3 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 56/241 (23%)

Query: 100 GTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS-SD 158
           GT GP         N  L      LKV+S  SVG+D+  ++ +K RG+ VGT  P +  D
Sbjct: 53  GTSGP-------SINRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGV-VGTHTPYTLDD 104

Query: 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG------- 211
            VA+    L ++ +RR  +    + +G+W   + + +    I ++  T+GI+G       
Sbjct: 105 TVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFG--IDVHHQTLGIIGMGRIGEQ 162

Query: 212 -----------------------TE--LGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIG 246
                                  TE  +G +   LDTL  QSDFI +   LT +T  +IG
Sbjct: 163 AARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIG 222

Query: 247 RKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
            ++F             RG  +D++AL+  L++  I GAGLDV   EP+  D+PL+QLDN
Sbjct: 223 EREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDN 282

Query: 294 C 294
            
Sbjct: 283 V 283

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 5

>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 49/219 (22%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A KNLK+I    VG D++ ++    RGI V      ++ + AE  I L +A +R+  Q  
Sbjct: 60  AAKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQAD 119

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
             +  G+W  K+        I L G T G++G                            
Sbjct: 120 RSVKEGKWERKKFMG-----IELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSK 174

Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
               ++G +LV  DTL A SD I V    TK+T  LIG+ QF             RGG++
Sbjct: 175 ERAEQIGVKLVDFDTLLASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIV 234

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           D+ AL E ++  K+  A LDV   EP   D+PL++LDN 
Sbjct: 235 DEAALYEAIKAGKVAAAALDVYEKEPPSPDNPLLKLDNV 273

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 136/338 (40%), Gaps = 102/338 (30%)

Query: 3   KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           KPK+L+TR   P       +L + F++  +   E  + R++ +EK++   AL+    +++
Sbjct: 2   KPKVLITRK-IP--ENGIKMLREHFEVEVWE-DEHEISREVLLEKVRDVDALVTMLSERI 57

Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
           D E  D                                                   A  
Sbjct: 58  DAEVFD---------------------------------------------------AAP 66

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            LK+++ ++VG+D++ +++    G+ +     V ++A A+    L +A +RR  +    +
Sbjct: 67  RLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFV 126

Query: 183 ASGEWALKQTQTVISDIIGLN--GSTVGIVG----------------------------- 211
            SGEW  +         +G +  G T+GIVG                             
Sbjct: 127 RSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPE 186

Query: 212 --TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
              ELGA+ +PLD L  +SDF+ +   LTK+T  +I  ++              RG ++D
Sbjct: 187 VEKELGAEFMPLDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVD 246

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            EALV+ LR+  I GAGLDV   EP   +  L  LDN 
Sbjct: 247 TEALVKALREGWIAGAGLDVFEEEPYYHEE-LFSLDNV 283

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 143/310 (46%), Gaps = 46/310 (14%)

Query: 3   KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           KPK+ +TR   P      D+L + F++  +P  E  +PR++ +EK++   AL+    +++
Sbjct: 2   KPKVFITRA-IP--ENGIDMLREHFEVEVWP-EEREIPREVLLEKVRDVDALVTMLSERI 57

Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
           D E  D +   L++++ ++VG+D++ +++   RGI V     V ++A A+F   L +A  
Sbjct: 58  DGEVFD-NAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATA 116

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI-----AVSRRFQQ 177
             ++I   S         + K +GI    +  +  D   +    +       AV+RR  +
Sbjct: 117 R-RLIEADSFTRS----GEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARR-AK 170

Query: 178 GHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCAL 237
           G                    I+  + +       EL A+  PL+ L  +SDF+ +   L
Sbjct: 171 GFGM----------------RILYYSRTRKPEAEEELKAEFKPLEELLKESDFVVLAVPL 214

Query: 238 TKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPA 284
           TK+T  +IG ++              RG ++D EAL++ L++  I GAGLDV   EP   
Sbjct: 215 TKETYHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPY-Y 273

Query: 285 DHPLVQLDNC 294
           +  L  L N 
Sbjct: 274 NEELFSLKNV 283

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C6DJ88|GHRB_PECCP Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 51/217 (23%)

Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
           L+  ST SVG+D  ++D +  +G+ +     V ++ VA+  + L +A +RR  +    + 
Sbjct: 63  LRAASTISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVAERVK 122

Query: 184 SGEWALKQTQTVISDIIG--LNGSTVGIVGT----------------------------- 212
           +GEW       V SD  G  ++  T+GI+G                              
Sbjct: 123 AGEW----KGGVDSDWFGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAE 178

Query: 213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
                 A+   LDTL A+SDF+ +T  LT +T  LIGR+Q              RG ++D
Sbjct: 179 AEQRFNARHCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVVD 238

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           ++AL E L    I GAGLDV + EP+P D PL+ L N
Sbjct: 239 EDALTEALVKGTIQGAGLDVFVKEPLPVDSPLLDLPN 275

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B1JH01|GHRB_YERPY Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ghrB PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 51/218 (23%)

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
           NL+  ST SVG+D+  ++ +  RGI +     V ++ VA+  + L ++ +RR  +    +
Sbjct: 66  NLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERV 125

Query: 183 ASGEWALKQTQTVISDIIGLN--GSTVGIVGT---------------------------- 212
            +GEW     +++  D  G++    T+GI+G                             
Sbjct: 126 KAGEW----QESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHE 181

Query: 213 ----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
                 GA+   LDTL A++DF+ +T  +T+ T  +IGR+Q              RG ++
Sbjct: 182 AAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKIKSSAILINAGRGPVV 241

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           D++AL+  L+D  I  AGLDV   EP+P D PL+ L N
Sbjct: 242 DEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q663W4|GHRB_YERPS Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=ghrB PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 51/218 (23%)

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
           NL+  ST SVG+D+  ++ +  RGI +     V ++ VA+  + L ++ +RR  +    +
Sbjct: 66  NLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERV 125

Query: 183 ASGEWALKQTQTVISDIIGLN--GSTVGIVGT---------------------------- 212
            +GEW     +++  D  G++    T+GI+G                             
Sbjct: 126 KAGEW----QESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHE 181

Query: 213 ----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
                 GA+   LDTL A++DF+ +T  +T+ T  +IGR+Q              RG ++
Sbjct: 182 AAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVV 241

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           D++AL+  L+D  I  AGLDV   EP+P D PL+ L N
Sbjct: 242 DEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
240848783	322	glyoxylate/hydroxypyruvate reductase-lik	0.891	0.813	0.336	3e-34
317575680	327	glyoxylate reductase/hydroxypyruvate red	0.734	0.660	0.319	4e-34
67043779	325	putative glyoxylate reductase/hydroxypyr	0.812	0.735	0.316	4e-34
427784185	360	Putative d-3-phosphoglycerate dehydrogen	0.809	0.661	0.316	6e-34
328784463	363	PREDICTED: glyoxylate reductase/hydroxyp	0.812	0.658	0.298	7e-34
380016588	325	PREDICTED: LOW QUALITY PROTEIN: glyoxyla	0.812	0.735	0.301	1e-33
213515414	328	glyoxylate reductase/hydroxypyruvate red	0.802	0.719	0.355	4e-33
193659821	330	PREDICTED: glyoxylate reductase/hydroxyp	0.802	0.715	0.307	8e-33
348529500	359	PREDICTED: glyoxylate reductase/hydroxyp	0.782	0.640	0.330	9e-33
242013759	341	Glyoxylate reductase/hydroxypyruvate red	0.809	0.697	0.300	3e-32

>gi|240848783|ref|NP_001155438.1| glyoxylate/hydroxypyruvate reductase-like [Acyrthosiphon pisum] gi|239789334|dbj|BAH71297.1| ACYPI001693 [Acyrthosiphon pisum]

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 164/312 (52%), Gaps = 50/312 (16%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDII---TYPISEGRMPRDIFIEKLKGCSALLCN 57
           MS+PK+L+     P +  A D+L   FD+    +  +++  +     ++K+ G  A+ C+
Sbjct: 1   MSRPKVLVAMKLVPEI--AIDLLRKRFDVEVCDSILVTQAEL-----MKKVPGKFAIFCS 53

Query: 58  PHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGL 117
           P  K+D+E +  +G +LKV+ T SVG+DH+ L  +K  GIR+G    V ++ VAE  +GL
Sbjct: 54  PANKIDEELIKTAGPSLKVVGTISVGYDHVDLSAMKKYGIRLGYTPDVLTETVAETTVGL 113

Query: 118 AIAVKNLKVISTFSV---GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 174
            IA       +  +V   G   + L  +  RGIR   VG V        NIG +IA   +
Sbjct: 114 LIATTRRFFEANHAVKTGGWKDVTLLWMCGRGIRNSVVGIVGCG-----NIGTSIAKKLK 168

Query: 175 FQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVT 234
                        A + +Q + +        T       LG +LV +D L  QSDFI ++
Sbjct: 169 -------------AFEISQLLYTS------RTEKPAVNALGGKLVTIDELVEQSDFIILS 209

Query: 235 CALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
            AL +DT+ +I +++              RGGL+DQ+AL+E L++ +IGGAGLDVM PEP
Sbjct: 210 IALNEDTKFIINKERIAKMKSHAVLVNIGRGGLIDQDALIEALQENRIGGAGLDVMTPEP 269

Query: 282 MPADHPLVQLDN 293
           +P D PL+++DN
Sbjct: 270 LPLDSPLMKMDN 281

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|317575680|ref|NP_001187384.1| glyoxylate reductase/hydroxypyruvate reductase [Ictalurus punctatus] gi|308322871|gb|ADO28573.1| glyoxylate reductase/hydroxypyruvate reductase [Ictalurus punctatus]

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 143/313 (45%), Gaps = 97/313 (30%)

Query: 26  MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHD 85
           M D+  +  S+  +PR   ++K++G   LLC    ++D E LD +G NLKVIST SVG D
Sbjct: 28  MCDVSVWD-SDEPLPRAELLKKVEGAHGLLCLLSDRIDAEVLDAAGPNLKVISTMSVGFD 86

Query: 86  HLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSR 145
           HL +D+IK RGIRVG    V +DA AE  + L +A                         
Sbjct: 87  HLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLA------------------------- 121

Query: 146 GIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGS 205
                                     +RR  +G   + SG W+  +   +     GL+GS
Sbjct: 122 -------------------------TARRLPEGIQEVKSGGWSSWKPLWLCG--YGLSGS 154

Query: 206 TVGIVGT-------------------------------ELGAQLVPLDTLCAQSDFIFVT 234
           TVG++G                                ELG + VPLDTL  +SDF+ V+
Sbjct: 155 TVGVIGLGRIGLAIAQRLKPFGVKRRLYSGRQPKPQAGELGGEYVPLDTLLCESDFVVVS 214

Query: 235 CALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
           C+L  DT++L  +  F             RG +++QE L++ L   +I  AGLDV  PEP
Sbjct: 215 CSLNPDTQELCNKAFFSKMKNTAVFINTSRGAVVNQEDLLDALTSGQIAAAGLDVTTPEP 274

Query: 282 MPADHPLVQLDNC 294
           +P DHPL++L+NC
Sbjct: 275 LPTDHPLLRLNNC 287

Source: Ictalurus punctatus

Species: Ictalurus punctatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|67043779|gb|AAY63988.1| putative glyoxylate reductase/hydroxypyruvate reductase [Lysiphlebus testaceipes]

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 151/338 (44%), Gaps = 99/338 (29%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
           MS+ K+L+TR D P       IL++ +D+I +  +   +PR  F+  +K    + C    
Sbjct: 1   MSRQKVLVTRGDIPE--SGLSILKNKYDLICWNKTT-PIPRTEFLSMVKDVDGIFCLLTD 57

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
           K+D+E                                                   L+ A
Sbjct: 58  KIDEEI--------------------------------------------------LSTA 67

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
              LKV+ST SVG DHL+L+ +K+RGI VG    V +DA AE  IGL +A SR+     +
Sbjct: 68  GSKLKVVSTMSVGLDHLNLNALKTRGIHVGYTPGVLTDATAELTIGLLLATSRKIIAAEH 127

Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------- 211
            + +GEW       +     GL  STVGIVG                             
Sbjct: 128 ALRNGEWTSWSPNWMCGP--GLANSTVGIVGLGRIGARVGEYLKPFGVNKILYSSRTEKT 185

Query: 212 --TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
              +   Q V L+TL  +SDFI VT ALT +T ++ G+  F             RG ++D
Sbjct: 186 DAKKFNGQHVSLNTLLTESDFIIVTIALTPETREMFGKSSFDMMKSTAIFINISRGEIVD 245

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           Q AL++ L++ KI GAGLDVM PEP+P DH L++LDNC
Sbjct: 246 QPALIDALKNNKIRGAGLDVMTPEPIPLDHELLKLDNC 283

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784185|gb|JAA57544.1| Putative d-3-phosphoglycerate dehydrogen [Rhipicephalus pulchellus]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 148/341 (43%), Gaps = 103/341 (30%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
           + KP +L+TR D  +   A ++L D  D+  +   +  +PR + + K+ G  AL C   +
Sbjct: 37  VQKPAVLVTRQDVAK--EALELLSDRCDVEVWN-EDQPIPRPVLLRKIAGKDALFCLVTE 93

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
           KVD E LD +G                                                 
Sbjct: 94  KVDSELLDAAG------------------------------------------------- 104

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
             NLK I T SVG+DH+++ +   R I +G    V +DA AE  IGL +A +RR  + H 
Sbjct: 105 -PNLKAIGTMSVGYDHINVAECTKRRIALGNTPHVLTDATAELGIGLLLATARRMFEAHR 163

Query: 181 CIASGEWA---LKQTQTVISDIIGLNGSTVGIVGT------------------------- 212
            I SGEWA      T    S+I    GSTVGIVG                          
Sbjct: 164 AIGSGEWASAVWSPTWMCGSEI---RGSTVGIVGMGNIGFGILERLKAFKVSRFLYYSRS 220

Query: 213 ------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                  +GAQ    + L  QSD+I V CALT +T ++  ++ F             RG 
Sbjct: 221 HKPAAETIGAQFTRFEELLKQSDYIIVCCALTPETTKMFDKEAFSMMKSTASLINISRGP 280

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           ++DQ+AL E L   KI  AGLDVM PEP+P DHPL++L NC
Sbjct: 281 VVDQQALYEALSSGKIRSAGLDVMTPEPLPKDHPLLKLPNC 321

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784463|ref|XP_003250454.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like [Apis mellifera]

 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 151/338 (44%), Gaps = 99/338 (29%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
           M++P++L+TR D P  S A ++L++  D++ +   E  +P+ + + K+K    + C    
Sbjct: 39  MNRPRVLITRPDIP--STALNLLKEQCDVVLWEKPEP-IPKSVLLSKIKNMDGIYCLLTD 95

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
           K+D+E L+ +G  LKV+++ SVG DHL L  +K R I+VG    + +DA AE  I L +A
Sbjct: 96  KIDEEILNAAGPQLKVVASMSVGVDHLDLQALKKRNIKVGYTPGILTDATAELTIALLLA 155

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
                                                              SRR  + + 
Sbjct: 156 --------------------------------------------------TSRRLIEANR 165

Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------- 211
            +  GEW       +     GL+ ST+GIVG                             
Sbjct: 166 AVYEGEWKAWSPTWMCGP--GLSNSTIGIVGLGRIGIQVAKCLKSFNTSRILYTSRNVKQ 223

Query: 212 --TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
             +E G + V LD L  +SDF+ VT ALT DT Q+  +  F             RG ++D
Sbjct: 224 EASEFGGEKVKLDILLEKSDFVIVTIALTPDTRQMFNQNTFKKMKKSAIFINVSRGEVVD 283

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           Q AL+E L++K I  AGLDVM PEP+P D  L++LDNC
Sbjct: 284 QSALIEALKNKIIRAAGLDVMTPEPIPLDSELLKLDNC 321

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016588|ref|XP_003692262.1| PREDICTED: LOW QUALITY PROTEIN: glyoxylate reductase/hydroxypyruvate reductase-like [Apis florea]

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 149/338 (44%), Gaps = 99/338 (29%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
           M +P++L+TR+D P  S A  +L++  D++ +   E  +P+ I + K+K    + C    
Sbjct: 1   MDRPRVLITRSDIP--SAALSLLKEHCDVVLWEKPEP-IPKSILLSKIKNIDGIYCXLTD 57

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
           K+D+E L+ +G  LKV+++ SVG DHL L  +K R I+VG    + +DA AE  I L +A
Sbjct: 58  KIDEEVLNAAGSQLKVVASMSVGVDHLDLQALKKRNIKVGYTPGILTDATAELTIALLLA 117

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
                                                              SRR  + + 
Sbjct: 118 --------------------------------------------------TSRRLIEANR 127

Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------- 211
            +  GEW       +     GL+ ST+GIVG                             
Sbjct: 128 AVYKGEWKAWSPTWMCGP--GLSKSTIGIVGLGRIGIQVAKCLKSFNTSKILYTSRNVKQ 185

Query: 212 --TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
             +E G + V LD L  +SDFI VT ALT DT Q+  +  F             RG ++D
Sbjct: 186 EASEFGGEKVKLDILLEKSDFIIVTVALTPDTRQMFNQNTFKKMKKSAIFINVSRGEVVD 245

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           Q AL+E L++  I  AGLDVM PEP+P D  L++LDNC
Sbjct: 246 QSALIEALKNGIIKAAGLDVMTPEPIPLDSELLKLDNC 283

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|213515414|ref|NP_001135102.1| glyoxylate reductase/hydroxypyruvate reductase [Salmo salar] gi|209147524|gb|ACI32894.1| Glyoxylate reductase/hydroxypyruvate reductase [Salmo salar]

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 139/276 (50%), Gaps = 40/276 (14%)

Query: 35  SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94
           S+  +PR   ++ + G   LLC    K+D E LD +G NLKVIST SVG DH+ +D+IK 
Sbjct: 37  SDEPVPRAELLKGVAGAHGLLCLLSDKIDTEVLDAAGPNLKVISTLSVGFDHMAMDEIKK 96

Query: 95  RGIRVGTVGPVSSDAVAEFNIGLAIAVKNL---KVISTFSVGHDHLHLDQIKSRGIRVGT 151
           RG+RVG    V +DA AE  + L +A        V+   + G        +   G+   T
Sbjct: 97  RGVRVGYTPDVLTDATAELTVALLLATARRLPEGVVEVINGGWSTWKPLWLCGYGLSGST 156

Query: 152 VGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG 211
           VG      +    IG+AIA  RR +          + +K+        +  +G T     
Sbjct: 157 VG-----VIGLGRIGMAIA--RRLK---------PFGVKK--------LLYSGRTAKSNA 192

Query: 212 TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
            E+  + VPLDTL ++SDF+ V+CALT DT+ L  +  F             RG +++QE
Sbjct: 193 AEVEGEYVPLDTLVSESDFVVVSCALTPDTQGLCNKDFFCKMKNTAVFINTSRGAVVNQE 252

Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            L + L   +I  AGLDV  PEP+P DHPL+ L NC
Sbjct: 253 DLYQALSSGQIACAGLDVTTPEPLPTDHPLLTLKNC 288

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193659821|ref|XP_001952060.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like isoform 1 [Acyrthosiphon pisum] gi|328704005|ref|XP_003242374.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like isoform 2 [Acyrthosiphon pisum]

 Score =  146 bits (369), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 160/342 (46%), Gaps = 106/342 (30%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDII---TYPISEGRMPRDIFIEKLKGCSALLCN 57
           MS+PK+L+     P +  A D+L   FD+    + PI+   M     ++K+ G  A+ C+
Sbjct: 5   MSRPKVLVAMKLVPEI--AIDLLRKRFDVEVCDSIPITRTEM-----MKKVPGKFAIFCS 57

Query: 58  PHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGL 117
              K+D+E +  +G +                                            
Sbjct: 58  ALSKIDEELIKTAGSS-------------------------------------------- 73

Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
                 LKV+ T SVG+DH+ L  +K  G+R+G    V S+ VAE  +GL IA +RRF +
Sbjct: 74  ------LKVVGTISVGYDHVDLTAMKKYGVRLGYTPHVLSETVAETTVGLLIATTRRFFE 127

Query: 178 GHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVG------------------------ 211
            ++ + +G W    T   ++ + G  +  S VGIVG                        
Sbjct: 128 ANHALKTGGWKDVTTVVWMNWMCGRGIRNSVVGIVGCGNIGTSIARKLKTFDISQLLYTS 187

Query: 212 -TE------LGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------R 251
            TE      LG +LV +D L  QSDFI ++ AL +DT+ +I R++              R
Sbjct: 188 RTEKPAVKALGGKLVTIDELVEQSDFIILSIALNEDTKFIINRERIAKMKSHAVLVNIGR 247

Query: 252 GGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           GGL+DQ+AL+E L++ +IGGAGLDVM PEP+P D PL+++DN
Sbjct: 248 GGLIDQDALIEALQENRIGGAGLDVMTPEPLPLDSPLMKMDN 289

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348529500|ref|XP_003452251.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like [Oreochromis niloticus]

 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 138/275 (50%), Gaps = 45/275 (16%)

Query: 39  MPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIR 98
           +PR   ++K+KG   LLC   +K+D E LD +G NLKV+ST SVG DHL LD++K RGIR
Sbjct: 71  VPRKELLQKVKGVDGLLCTLTEKIDAELLDAAGPNLKVLSTMSVGFDHLSLDELKKRGIR 130

Query: 99  VGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158
           +G    V +DAVAE  + L +A     + +T           + K+ G        +   
Sbjct: 131 IGYTPEVLTDAVAELTVALLLATSRRLIEAT----------HEAKTGGWGTWRTLWLCGY 180

Query: 159 AVAEFNIG------LAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT 212
            +A   +G      + +A++ R               K  + + +D+     +    + +
Sbjct: 181 ELANSTVGILGLGRIGVAIAERLA-----------PFKVKKFIYTDV-----APRPELAS 224

Query: 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
            + A+ V  D L  QSDF+ V CALT +T+++  +  F             RGG+++QE 
Sbjct: 225 VINAEYVSFDELAKQSDFLAVCCALTPETKEICNKNLFSKMKKTSIFINTSRGGVVNQED 284

Query: 260 LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           L E L   +I GAGLDV +PEP+P +HPL  L NC
Sbjct: 285 LYEALSTGQIAGAGLDVTVPEPLPTNHPLFTLKNC 319

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242013759|ref|XP_002427568.1| Glyoxylate reductase/hydroxypyruvate reductase, putative [Pediculus humanus corporis] gi|212511983|gb|EEB14830.1| Glyoxylate reductase/hydroxypyruvate reductase, putative [Pediculus humanus corporis]

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 149/339 (43%), Gaps = 101/339 (29%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPH 59
           MS   + +TR D P +  A ++L+   +++  +P     +PR+  ++++ G  AL C   
Sbjct: 21  MSVYSVYITRPDIPNI--AIELLKKKGYNVTVWP-HMTPIPREELLKEIVGKDALYCVIT 77

Query: 60  QKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI 119
            K+D E L++  +                                               
Sbjct: 78  DKIDAEVLNKGDK----------------------------------------------- 90

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
               LKVIST SVG++HL +++IK R I +G    V +DAVAE  +GL IA +RRF + H
Sbjct: 91  ----LKVISTMSVGYEHLDINEIKKRNISIGYTPGVLTDAVAELTVGLLIATTRRFFESH 146

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
             +  GEW       +    +GL  STVGIVG                            
Sbjct: 147 QALLDGEWPTWSALWMCG--VGLKNSTVGIVGFGRIGQAVAKRLIPFGVSQIVYSGRSKK 204

Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
               E  A+ + LD L   SDF+ VTCALT +T+ +  +  F             RGG++
Sbjct: 205 PEEKEFNAKFMSLDELVTISDFVIVTCALTPETKGMFHKDIFKKMKPTSIFVNTSRGGVV 264

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            Q+ L+  L+   IG AGLDVM PEP+P DH L+QL NC
Sbjct: 265 QQDDLINALKTNTIGAAGLDVMTPEPLPTDHELLQLKNC 303

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
UNIPROTKB|F1NX57	345	GRHPR "Uncharacterized protein	0.292	0.249	0.488	8e-29
ZFIN|ZDB-GENE-040426-1847	361	grhprb "glyoxylate reductase/h	0.904	0.736	0.328	1e-27
UNIPROTKB|F1MB84	328	GRHPR "Uncharacterized protein	0.384	0.344	0.417	2e-27
MGI|MGI:1923488	328	Grhpr "glyoxylate reductase/hy	0.289	0.259	0.482	5.5e-27
FB|FBgn0037370	362	CG1236 [Drosophila melanogaste	0.394	0.320	0.361	6e-26
RGD|1308851	328	Grhpr "glyoxylate reductase/hy	0.289	0.259	0.470	1.7e-25
UNIPROTKB|E9PSJ6	335	Grhpr "Protein Grhpr" [Rattus	0.289	0.253	0.470	2e-25
UNIPROTKB|D4A6S1	336	Grhpr "Protein Grhpr" [Rattus	0.289	0.252	0.470	2.1e-25
ZFIN|ZDB-GENE-040724-230	327	grhpra "glyoxylate reductase/h	0.833	0.749	0.348	3.6e-25
UNIPROTKB|Q9UBQ7	328	GRHPR "Glyoxylate reductase/hy	0.238	0.213	0.542	3.9e-24

UNIPROTKB|F1NX57 GRHPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 8.0e-29, Sum P(2) = 8.0e-29
 Identities = 42/86 (48%), Positives = 54/86 (62%)

Query:    35 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94
             SE  +PR   +  + G   LLC    ++D E LD +G +LKVIST SVG DHL LD+IK 
Sbjct:    53 SEEPVPRRELLAGVAGKQGLLCLLSDRIDAEVLDAAGPSLKVISTMSVGFDHLALDEIKK 112

Query:    95 RGIRVGTVGPVSSDAVAEFNIGLAIA 120
             RGIRVG    V +DA AE ++ L +A
Sbjct:   113 RGIRVGYTPDVLTDATAELSVALLLA 138

GO:0051287 "NAD binding" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1847 grhprb "glyoxylate reductase/hydroxypyruvate reductase b" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 104/317 (32%), Positives = 152/317 (47%)

Query:     4 PKLLLTRNDYPRVSP-AYDILEDMFDIITYPI--SEGRMPRDIFIEKLKGCSALLCNPHQ 60
             PK+ +TR    R+ P   DIL     +  + +  S+  +PR   + K+KGC  +LC   +
Sbjct:    30 PKVYVTR----RIPPDGLDILRKSGQV-QFELWDSDDPVPRVELLNKVKGCDGILCVLTE 84

Query:    61 KVDKEALDESGENLKVISTFSVGHDHLHLDQIKS----------RGIRVGTVGPVSSDAV 110
             K+D + LD +G NLKV+ST SVG+DHL L+++K           RGIRVG    V +DAV
Sbjct:    85 KIDAQLLDVAGPNLKVLSTMSVGYDHLSLEELKKSLLIWACIFCRGIRVGYTPEVLTDAV 144

Query:   111 AEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 170
             AE  + L +A     + +T    H      + K+ G        +    +A   +G+ + 
Sbjct:   145 AELTVALLLATSRRLIEAT----H------EAKTGGWGTWRTMWLCGHELANSTVGI-LG 193

Query:   171 VSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDF 230
             + R    G   IA      K  + + +D+      T   +   + A+ V LD L  QSDF
Sbjct:   194 LGRI---GV-AIAERLKPFKVKKFIYTDV---EPRTE--LANMINAEYVSLDELAKQSDF 244

Query:   231 IFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM 277
             + + CALT +T  +     F             RGG+++QE L E L    I GAGLDV 
Sbjct:   245 LAICCALTPETHGICNWNLFSKMKKNAIFINTSRGGVVNQEDLYEALSTGLIAGAGLDVT 304

Query:   278 IPEPMPADHPLVQLDNC 294
              PEP+P  HPL  L NC
Sbjct:   305 TPEPLPTHHPLYTLKNC 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1MB84 GRHPR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
 Identities = 48/115 (41%), Positives = 67/115 (58%)

Query:     5 KLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDK 64
             K+ +TR   P  S A     D  ++  +  S+  +PR+   +++ G   LLC    ++DK
Sbjct:     8 KVFITRRIPPEGSAALARAADC-EVEQWD-SDEPIPREDLEQRMAGAQGLLCLLSDRIDK 65

Query:    65 EALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI 119
             + LD +G NLKVIST SVG DHL LD+IK RGIRVG    V +DA AE  + L +
Sbjct:    66 KLLDAAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLL 120

GO:0070402 "NADPH binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

MGI|MGI:1923488 Grhpr "glyoxylate reductase/hydroxypyruvate reductase" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 5.5e-27, Sum P(2) = 5.5e-27
 Identities = 41/85 (48%), Positives = 53/85 (62%)

Query:    35 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94
             S+  +PR    + + G   LLC    +VDK+ LD +G NL+VIST SVG DHL LD+IK 
Sbjct:    36 SDDPIPRKDLEQGVVGAHGLLCRLSDRVDKKLLDAAGANLRVISTLSVGVDHLALDEIKK 95

Query:    95 RGIRVGTVGPVSSDAVAEFNIGLAI 119
             RGIRVG    V +DA AE  + L +
Sbjct:    96 RGIRVGYTPGVLTDATAELAVSLLL 120

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0007588 "excretion" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISO

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043648 "dicarboxylic acid metabolic process" evidence=ISO

GO:0048037 "cofactor binding" evidence=IEA

GO:0050661 "NADP binding" evidence=ISO

GO:0051259 "protein oligomerization" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

GO:0070402 "NADPH binding" evidence=ISO

FB|FBgn0037370 CG1236 [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
 Identities = 43/119 (36%), Positives = 64/119 (53%)

Query:     2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
             S+ K+ +TR D        ++L     + T+      +PR   I  + G  AL C    K
Sbjct:    40 SQHKVYVTRPDVD--DSGLELLRKSCQVSTWH-ETNPVPRSELIRVVAGKDALYCALTDK 96

Query:    62 VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
             VDKE LD +G  LK ++T SVG+DH+ +++ + RGIRVG    V +DA AE  + L +A
Sbjct:    97 VDKEVLDAAGPQLKCVATISVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLA 155

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

RGD|1308851 Grhpr "glyoxylate reductase/hydroxypyruvate reductase" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 40/85 (47%), Positives = 52/85 (61%)

Query:    35 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94
             S+  +P     + + G   LLC    +VDK+ LD +G NL+VIST SVG DHL LD+IK 
Sbjct:    36 SDDPIPSKDLEQGVAGAYGLLCRLSDRVDKKLLDAAGANLRVISTLSVGVDHLALDEIKK 95

Query:    95 RGIRVGTVGPVSSDAVAEFNIGLAI 119
             RGIRVG    V +DA AE  + L +
Sbjct:    96 RGIRVGYTPGVLTDATAELAVSLLL 120

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0007588 "excretion" evidence=ISO

GO:0008465 "glycerate dehydrogenase activity" evidence=ISO;IDA

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISO;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISO;IDA

GO:0031406 "carboxylic acid binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043648 "dicarboxylic acid metabolic process" evidence=IDA

GO:0050661 "NADP binding" evidence=IDA

GO:0051259 "protein oligomerization" evidence=ISO

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070402 "NADPH binding" evidence=ISO

UNIPROTKB|E9PSJ6 Grhpr "Protein Grhpr" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
 Identities = 40/85 (47%), Positives = 52/85 (61%)

Query:    35 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94
             S+  +P     + + G   LLC    +VDK+ LD +G NL+VIST SVG DHL LD+IK 
Sbjct:    43 SDDPIPSKDLEQGVAGAYGLLCRLSDRVDKKLLDAAGANLRVISTLSVGVDHLALDEIKK 102

Query:    95 RGIRVGTVGPVSSDAVAEFNIGLAI 119
             RGIRVG    V +DA AE  + L +
Sbjct:   103 RGIRVGYTPGVLTDATAELAVSLLL 127

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|D4A6S1 Grhpr "Protein Grhpr" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 40/85 (47%), Positives = 52/85 (61%)

Query:    35 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94
             S+  +P     + + G   LLC    +VDK+ LD +G NL+VIST SVG DHL LD+IK 
Sbjct:    43 SDDPIPSKDLEQGVAGAYGLLCRLSDRVDKKLLDAAGANLRVISTLSVGVDHLALDEIKK 102

Query:    95 RGIRVGTVGPVSSDAVAEFNIGLAI 119
             RGIRVG    V +DA AE  + L +
Sbjct:   103 RGIRVGYTPGVLTDATAELAVSLLL 127

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

ZFIN|ZDB-GENE-040724-230 grhpra "glyoxylate reductase/hydroxypyruvate reductase a" [Danio rerio (taxid:7955)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 93/267 (34%), Positives = 129/267 (48%)

Query:    35 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS 94
             S+  +PR   ++ + G   L+C    K+D E LD +G NLKVIST SVG DHL +D+IK 
Sbjct:    36 SDEPVPRAELLKGVAGAHGLICLLSDKIDTEVLDAAGPNLKVISTLSVGFDHLAIDEIKK 95

Query:    95 RGIRVGTVGPVSSDAVAEFNIGLAIAV-KNLK--VISTFSVGHDHLHLDQIKSRGIRVGT 151
             RGIRVG    V +DA AE  + L +A  + L   V    + G        +   G+   T
Sbjct:    96 RGIRVGYTPDVLTDATAELTVALLLATARRLPEGVEEVKNGGWSTWKPLWLCGYGLSGST 155

Query:   152 VGPVSSDAVAEFNIGLAIAVSRRFQQ-G-HNCIASGEWALKQTQTVISDIIGLNGSTVGI 209
             VG +         IGLAIA  RR +  G    + +G     + + V  + + L+      
Sbjct:   156 VGVIGLG-----RIGLAIA--RRLKPFGVKKLLYTGRKPKPEAEEVDGEYVPLDTLVRES 208

Query:   210 VGTELGAQLVPLDT--LCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDK 267
                 +   L P DT  LC ++ F        K T   I     RG +++QE L E L   
Sbjct:   209 DFVVVSCSLTP-DTQGLCDKTFF-----GKMKKTSVFINSS--RGAVVNQEDLFEALSSG 260

Query:   268 KIGGAGLDVMIPEPMPADHPLVQLDNC 294
             +I  AGLDV  PEP+P +HPL+ L NC
Sbjct:   261 QIAAAGLDVTSPEPLPTNHPLLTLKNC 287

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

UNIPROTKB|Q9UBQ7 GRHPR "Glyoxylate reductase/hydroxypyruvate reductase" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 38/70 (54%), Positives = 43/70 (61%)

Query:    50 GCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 109
             G   LLC     VDK  LD +G NLKVIST SVG DHL LD+IK RGIRVG    V +D 
Sbjct:    51 GAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDT 110

Query:   110 VAEFNIGLAI 119
              AE  + L +
Sbjct:   111 TAELAVSLLL 120

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0007588 "excretion" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0051287 "NAD binding" evidence=TAS

GO:0008465 "glycerate dehydrogenase activity" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UBQ7	GRHPR_HUMAN	1, ., 1, ., 1, ., 8, 1	0.3320	0.7312	0.6554	yes	N/A
Q91Z53	GRHPR_MOUSE	1, ., 1, ., 1, ., 8, 1	0.3321	0.7823	0.7012	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	294
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	2e-67
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	4e-48
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	1e-44
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	1e-43
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	6e-42
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	8e-41
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	3e-40
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	3e-39
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	5e-39
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	7e-36
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	9e-36
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	9e-34
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-33
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	2e-32
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-32
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	3e-32
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	6e-32
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	2e-30
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-28
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	2e-28
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	1e-27
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-27
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	3e-27
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	3e-26
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	5e-26
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	3e-25
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	1e-24
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	4e-24
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	4e-24
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-23
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	3e-23
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	8e-23
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	4e-22
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	4e-21
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	5e-21
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	9e-21
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	5e-20
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	3e-19
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	9e-19
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	3e-18
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	4e-18
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	6e-18
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	1e-15
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	7e-15
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	6e-14
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	7e-12
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	2e-11
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	4e-11
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	8e-11
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	2e-08
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	9e-08
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	2e-05
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	2e-04
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	6e-04
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	0.001
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	0.001

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  211 bits (541), Expect = 2e-67
 Identities = 105/337 (31%), Positives = 148/337 (43%), Gaps = 105/337 (31%)

Query: 4   PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
           PK+L+TR        A  +L + F++  +   +  +PR+  +E  KG   LLC    K+D
Sbjct: 1   PKVLVTRRLPE---EALALLREGFEVEVWD-EDRPLPREELLEAAKGADGLLCTLTDKID 56

Query: 64  KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKN 123
            E LD                                                   A   
Sbjct: 57  AELLD---------------------------------------------------AAPP 65

Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
           LKVI+ +SVG+DH+ +D  K+RGI V  T   V +DA A+    L +A +RR  +G   +
Sbjct: 66  LKVIANYSVGYDHIDVDAAKARGIPVTNTPD-VLTDATADLAFALLLAAARRVVEGDRFV 124

Query: 183 ASGEW-ALKQTQTVISDIIGLNGSTVGIVG------------------------------ 211
            +GEW     T  + +D   L+G T+GIVG                              
Sbjct: 125 RAGEWKGWSPTLLLGTD---LHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRSRKPEA 181

Query: 212 -TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
             ELGA+ V LD L A+SDF+ + C LT +T  LI  ++              RGG++D+
Sbjct: 182 EEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDE 241

Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           +ALVE L+  KI GAGLDV  PEP+PADHPL+ L N 
Sbjct: 242 DALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNV 278

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  162 bits (413), Expect = 4e-48
 Identities = 93/336 (27%), Positives = 138/336 (41%), Gaps = 101/336 (30%)

Query: 3   KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           K  +L TR   P      + L++ F++  Y   +   P     E+LK   A++   + ++
Sbjct: 2   KIVVLSTR-KLPP--EVLERLKEKFEVERYE--DDLTPDTELAERLKDADAVITFVNDRI 56

Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
           D E L E    LK+I+T S G+D+                           ++  A    
Sbjct: 57  DAEVL-EKLPGLKLIATRSAGYDN--------------------------VDLEAA---- 85

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
                               K RGI V  V   S++AVAE  + L +A++RR  +G   +
Sbjct: 86  --------------------KERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRV 125

Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------ 212
             G W+L      +     L G T+GI+G                               
Sbjct: 126 REGNWSLSGGPDPLL-GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAE 184

Query: 213 -ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
            ELGA+ V LD L A+SD I + C LT +T  LI  ++              RGGL+D++
Sbjct: 185 KELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQ 244

Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           AL++ L+  KI GAGLDV   EP   DHPL++LDN 
Sbjct: 245 ALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNF 280

Length = 324

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  153 bits (388), Expect = 1e-44
 Identities = 73/217 (33%), Positives = 99/217 (45%), Gaps = 48/217 (22%)

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
             LK I     G D++ LD  K RGI V  V   +++AVAE  +GL +A+ RR  +    
Sbjct: 62  PKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAA 121

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------- 212
           +  G   L            L G TVGIVG                              
Sbjct: 122 VRRGWGWLWAGFP----GYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEP 177

Query: 213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
             +LG ++V LD L AQSD + +   LT +T  LI  ++              RGGL+D+
Sbjct: 178 EEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDE 237

Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           +AL+  L+  KI GA LDV  PEP+PADHPL++L N 
Sbjct: 238 DALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNV 274

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  150 bits (381), Expect = 1e-43
 Identities = 83/287 (28%), Positives = 123/287 (42%), Gaps = 78/287 (27%)

Query: 75  KVIST---FSVGHDHLHLDQIKSRGIRV---GTVGPVSSDAVAEFNIGLAIAV------- 121
           KV+ T   FS   +    + +++ G  V       P++ + + E  +  A  V       
Sbjct: 1   KVLVTPRSFSKYSEE-AKELLEAAGFEVVLNPLGRPLTEEELIEL-LKDADGVIAGLDPI 58

Query: 122 --------KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSR 173
                     LKVIS + VG+D++ L+  K RGI V      +S++VAE  IGL +A++R
Sbjct: 59  TEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALAR 118

Query: 174 RFQQGHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------- 211
           +  Q    + +G W            +G  L G T+GI+G                    
Sbjct: 119 QIPQADREVRAGGW---------DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVL 169

Query: 212 -----------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF---------- 250
                       E G + V L+ L  +SDFI +   LT +T  LI   +           
Sbjct: 170 AYDPYPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILI 229

Query: 251 ---RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
              RGGL+D+EAL E L+  +I GA LDV   EP PAD PL++L N 
Sbjct: 230 NTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNV 276

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  146 bits (370), Expect = 6e-42
 Identities = 69/222 (31%), Positives = 102/222 (45%), Gaps = 49/222 (22%)

Query: 117 LAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ 176
           L  A   L++I    VG D + L+   +RGI V  +   ++++VAE  + L +A+ RR  
Sbjct: 59  LLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLP 118

Query: 177 QGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG------------------------- 211
           +    + +G W     +        L+G TVGIVG                         
Sbjct: 119 EADRELRAGRWG----RPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRF 174

Query: 212 -------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------R 251
                   +LG + V LD L A+SD + +   LT +T  LIG ++              R
Sbjct: 175 RDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTAR 234

Query: 252 GGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           GGL+D+EAL+  LR   + GAGLDV   EP+P D PL++LDN
Sbjct: 235 GGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDN 276

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  143 bits (363), Expect = 8e-41
 Identities = 68/250 (27%), Positives = 102/250 (40%), Gaps = 58/250 (23%)

Query: 89  LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIR 148
           L+ +      + +V PV+ + +A        A  NLK I     G D++ L+    RGI 
Sbjct: 40  LEALADADALIVSVTPVTEEVLA--------AAPNLKAIGRAGAGVDNIDLEAATKRGIL 91

Query: 149 VGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVG 208
           V      ++ +VAE  + L +A++RR          GEW  K  +        L G TVG
Sbjct: 92  VVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFR-----GTELAGKTVG 146

Query: 209 IVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCA 236
           I+G                                 +    +  LD L A++D + +   
Sbjct: 147 IIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLP 206

Query: 237 LTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP 283
           LT +T  LI  ++              RGG++D++AL+  L   KI GA LDV   EP+P
Sbjct: 207 LTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLP 266

Query: 284 ADHPLVQLDN 293
           AD PL  L N
Sbjct: 267 ADSPLWDLPN 276

Length = 324

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  141 bits (359), Expect = 3e-40
 Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 45/219 (20%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A   LK+I     G +++ ++    RGI V      +++AVAEF +GL +A +R   + H
Sbjct: 64  AAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAH 123

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
             +  GEW  K           L G TVGIVG                            
Sbjct: 124 AALKDGEW-RKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDP 182

Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
                 G + V L+ L  +SD + +   LT +T  +IG ++F             R GL+
Sbjct: 183 EKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLV 242

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           D++AL+E L + KIGGA LDV   EP+PADHPL++LDN 
Sbjct: 243 DEDALIEALEEGKIGGAALDVFPEEPLPADHPLLKLDNV 281

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  139 bits (352), Expect = 3e-39
 Identities = 69/218 (31%), Positives = 98/218 (44%), Gaps = 49/218 (22%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A   LKVI    VG D++ ++   +RGI V      ++ +VAE  I L +A++R   Q  
Sbjct: 59  AAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQAD 118

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
             + +G+W  K+   V      L G T+GIVG                            
Sbjct: 119 ASLRAGKWDRKKFMGV-----ELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYISA 173

Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
                 G +LV LD L A++DFI +   LT +T  LI  ++              RGG++
Sbjct: 174 ERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIV 233

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           D+ AL + L+  KI GA LDV   EP PAD PL+ L N
Sbjct: 234 DEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPN 271

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  138 bits (351), Expect = 5e-39
 Identities = 80/336 (23%), Positives = 126/336 (37%), Gaps = 105/336 (31%)

Query: 4   PKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           PK+++T  D+P +    ++LE+   +++       R   ++ IE      ALL   +  V
Sbjct: 1   PKVVITDYDFPDLDIEREVLEEAGVELVDAQ---SRTEDEL-IEAAADADALLVQ-YAPV 55

Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
             E ++                                                   A+ 
Sbjct: 56  TAEVIE---------------------------------------------------ALP 64

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            LKVI  + VG D++ +     RGI V  V    ++ VA+  + L +A++R+       +
Sbjct: 65  RLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAV 124

Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVG------------------------------- 211
            +G W      TV   I  L G T+G+VG                               
Sbjct: 125 RAGGW----DWTVGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYDPYVPDGVA 180

Query: 212 TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
              G ++V LD L A+SD + + C LT +T  LI  +               RGGL+D+ 
Sbjct: 181 ALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEA 240

Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           AL   L+  +I GA LDV+  EP PAD PL+   N 
Sbjct: 241 ALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNV 276

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  130 bits (329), Expect = 7e-36
 Identities = 69/217 (31%), Positives = 100/217 (46%), Gaps = 42/217 (19%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
            + NLK+I   + G++++ L   K RGI V  V   S+D+VA+    L +A++R     +
Sbjct: 62  QLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHN 121

Query: 180 NCIASGEWALKQTQTVIS-DIIGLNGSTVGIVG--------------------------- 211
           + + +GEW            II L G T+GI+G                           
Sbjct: 122 DVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGA 181

Query: 212 TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
             L    V LD L AQSD I + C LT +T  LI  ++              RGGL+D++
Sbjct: 182 PPLREGYVSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQ 241

Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQ-LDNC 294
           AL + L   KI GAGLDV+  EP  AD+PL++   N 
Sbjct: 242 ALADALNSGKIAGAGLDVLSQEPPRADNPLLKAAPNL 278

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  126 bits (318), Expect = 9e-36
 Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 48/173 (27%)

Query: 165 IGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ 212
           + L +A++RR  +    + +G W              L+G TVGI+G             
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDALL-----GRELSGKTVGIIGLGRIGRAVARRLK 55

Query: 213 ------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF---- 250
                              LGA+ V LD L A+SD + +   LT +T  LI  ++     
Sbjct: 56  AFGMKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMK 115

Query: 251 ---------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
                    RGGL+D++AL+  L+  +I GA LDV  PEP+P DHPL++L N 
Sbjct: 116 PGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNV 168

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  125 bits (315), Expect = 9e-34
 Identities = 84/334 (25%), Positives = 128/334 (38%), Gaps = 103/334 (30%)

Query: 5   KLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDK 64
           K+L+T         A + LE+ F++  Y    G + ++  +E++    AL+      VDK
Sbjct: 2   KVLVT---GWIPKEALEELEENFEVTYYD-GLGLISKEELLERIADYDALITPLSTPVDK 57

Query: 65  EALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNL 124
           E +D + +NLK+I+ +  G D++ +D  K +GI V     VS++  AE   GL +A+   
Sbjct: 58  EIID-AAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILAL--- 113

Query: 125 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIAS 184
                              +R I  G               G  +  +  F  GH     
Sbjct: 114 -------------------ARRIAEGD---------RLMRRGGFLGWAPLFFLGHE---- 141

Query: 185 GEWALKQTQTVISDIIGLNGSTVGIVG--------------------------------T 212
                            L G T+GI+G                                 
Sbjct: 142 -----------------LAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHRLSEETEK 184

Query: 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
           ELGA  V LD L  +SDF+ +    T +T  LI    F             RG L+D++A
Sbjct: 185 ELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKA 244

Query: 260 LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           LV+ L+  +I GA LDV   EP  +   L +LDN
Sbjct: 245 LVDALKTGEIAGAALDVFEFEPEVSPE-LKKLDN 277

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  124 bits (313), Expect = 2e-33
 Identities = 70/223 (31%), Positives = 102/223 (45%), Gaps = 54/223 (24%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVSSDAVAEFNIGLAIAVSRRFQQG 178
               LK+I+   +G+D++ L      G+ V  V G V  DAVAE  + L + V R+  Q 
Sbjct: 66  YNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQA 125

Query: 179 HNCIASGEWALKQTQTVISDIIG--LNGSTVGIVG------------------------- 211
              +  G+W  +         +G  L+G TVGI+G                         
Sbjct: 126 SEAVKEGKWTERAN------FVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDP 179

Query: 212 -------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------R 251
                   + GA+ V L+ L A+SD I +   LT++T  +I  K F             R
Sbjct: 180 YVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTAR 239

Query: 252 GGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           G L+D+EAL+E L+  KI GAGLDV+  EP+ ADHPL+  +N 
Sbjct: 240 GELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENV 282

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  121 bits (305), Expect = 2e-32
 Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 54/221 (24%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A KNLK+I+   VG D++ ++  K +GI+V      SS++VAE  IGL ++++R   + +
Sbjct: 60  AAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRAN 119

Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
             +  G+W  K+         G  L G T+GI+G                          
Sbjct: 120 REMKLGKWNKKK-------YKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYP 172

Query: 212 -----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                 ELG + V L+ L   SDFI +   LT +T+ +I +K+              RGG
Sbjct: 173 KDEQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGG 232

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           ++D+EAL+E L+  K+ GA LDV   EP P    L++L N 
Sbjct: 233 VIDEEALLEALKSGKLAGAALDVFENEP-PPGSKLLELPNV 272

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  121 bits (305), Expect = 2e-32
 Identities = 77/222 (34%), Positives = 105/222 (47%), Gaps = 56/222 (25%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A KNLK+IS    G DH+ L+  K RGI V      S++AVAE  IGLAI + R      
Sbjct: 66  ACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPC- 124

Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVGT------------------------- 212
                 + A++   T  + +IG  L G TVGIVGT                         
Sbjct: 125 ------DAAVRAGGT-KAGLIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSE 177

Query: 213 -----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGL 254
                 LG + V LD L A+SD + +   L  +T+ LIG+++              RG +
Sbjct: 178 KEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPV 237

Query: 255 LDQEALVEFLRDKKIGGAGLDV--MIPEPMPADHPLVQLDNC 294
           +D EAL + L + KI GAG+DV  M P P+PAD+PL+   N 
Sbjct: 238 VDNEALADALNEGKIAGAGIDVFDMEP-PLPADYPLLHAPNT 278

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  121 bits (305), Expect = 3e-32
 Identities = 78/338 (23%), Positives = 138/338 (40%), Gaps = 102/338 (30%)

Query: 2   SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
            KPK+ +TR          ++LE+ F++  +   E  +PR++ +EK++   AL+    ++
Sbjct: 1   MKPKVFITREIPEN---GIEMLEEHFEVEVWE-DEREIPREVLLEKVRDVDALVTMLSER 56

Query: 62  VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           +D E  +                                                   A 
Sbjct: 57  IDCEVFE---------------------------------------------------AA 65

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
             L++++ ++VG+D++ +++   RGI V     V ++A A+F   L +A +RR  +  + 
Sbjct: 66  PRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHF 125

Query: 182 IASGEWALKQTQTVISDIIG--LNGSTVGIVG---------------------------- 211
           + SGEW  +         +G  + G T+GI+G                            
Sbjct: 126 VRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP 185

Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
               ELGA+  PL+ L  +SDF+ +   LTK+T  +I  ++              RG ++
Sbjct: 186 EAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVV 245

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           D +ALV+ L++  I GAGLDV   EP   +  L  L N
Sbjct: 246 DTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKN 282

Length = 333

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  119 bits (302), Expect = 6e-32
 Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 51/220 (23%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A   L+ I + S G D L   ++  R + +     +    +AE+ +G  +A +R+  +  
Sbjct: 56  AAPRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYA 115

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-ELGAQL-------------------- 218
              A   W  ++   V      L G TV IVG  ++G ++                    
Sbjct: 116 RNQAERRW--QRRGPVRE----LAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRP 169

Query: 219 VP-----------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGL 254
            P           LD L  ++D++     LT +T  L   ++F             RG +
Sbjct: 170 APPVVDEVYTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSV 229

Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           +D++AL+E L   +I GA LDV   EP+PAD PL  L N 
Sbjct: 230 VDEDALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNV 269

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  115 bits (290), Expect = 2e-30
 Identities = 70/252 (27%), Positives = 105/252 (41%), Gaps = 66/252 (26%)

Query: 88  HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGI 147
           H  +I  R +       +S+  +A        A+  L++I++F VG+D + LD  ++RGI
Sbjct: 39  HGGRI--RAVVTNGETGLSAALIA--------ALPALELIASFGVGYDGIDLDAARARGI 88

Query: 148 RVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ---TQTVISDIIGLNG 204
           RV     V +D VA+  +GL +AV RR       + +G W       T+ V       +G
Sbjct: 89  RVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAGRWPKGAFPLTRKV-------SG 141

Query: 205 STVGIVGTELG------AQ-LVPLDT-----------------------LCAQSDFIFVT 234
             VGIVG  LG      A+ L                            L A+SD + V 
Sbjct: 142 KRVGIVG--LGRIGRAIARRLEAFGMEIAYHGRRPKPDVPYRYYASLLELAAESDVLVVA 199

Query: 235 CALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
           C     T  L+  +               RG ++D+ AL+  L++ +I GAGLDV   EP
Sbjct: 200 CPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEP 259

Query: 282 MPADHPLVQLDN 293
                 L+ LDN
Sbjct: 260 NVPA-ALLDLDN 270

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  114 bits (288), Expect = 1e-28
 Identities = 72/226 (31%), Positives = 100/226 (44%), Gaps = 66/226 (29%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRV------GTVGPVSSDAVAEFNIGLAIAVSR 173
           A KNLKVI    VG D++ +     RGI V       T+      + AE  I L +A++R
Sbjct: 61  AAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTI------SAAEHTIALMLALAR 114

Query: 174 RFQQGHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------- 211
              Q H  + +G+W  K         +G  L G T+GI+G                    
Sbjct: 115 NIPQAHASLKAGKWERK-------KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVI 167

Query: 212 -----------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF---------- 250
                       +LG +LV LD L A++DFI +   LT +T  LIG ++           
Sbjct: 168 AYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRII 227

Query: 251 ---RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
              RGG++D+ AL E L+  K+ GA LDV   EP P D PL +L N
Sbjct: 228 NCARGGIIDEAALAEALKSGKVAGAALDVFEKEP-PTDSPLFELPN 272

Length = 526

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  110 bits (277), Expect = 2e-28
 Identities = 63/316 (19%), Positives = 104/316 (32%), Gaps = 97/316 (30%)

Query: 21  DILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF 80
           ++L++  ++  +      +  +  +E  K   AL+      V  E L+            
Sbjct: 13  ELLKEGGEVEVHD----ELLTEELLEAAKDADALIVRSTTPVTAEVLE------------ 56

Query: 81  SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLD 140
                                                  A   LKVI+   VG D++ LD
Sbjct: 57  ---------------------------------------AAPGLKVIARRGVGVDNIDLD 77

Query: 141 QIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQ------- 193
               RGI V  V   S+++VAE  +GL +A++RR  +    + +G+W             
Sbjct: 78  AATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKKGGPIGLELYGK 137

Query: 194 TVISDIIGLNGSTVGIVGTELGAQLVPLD----------------------TLCAQSDFI 231
           T+     G  G     +   LG  +V  D                          +SD +
Sbjct: 138 TLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDL 197

Query: 232 FVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI 278
                 T      I   +              RGG + +EA ++ L ++ I  A LDV+ 
Sbjct: 198 INLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVE 257

Query: 279 PEPMPADHPLVQLDNC 294
            EP P + PL+ L N 
Sbjct: 258 EEPPPVNSPLLDLPNV 273

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  108 bits (273), Expect = 1e-27
 Identities = 57/198 (28%), Positives = 80/198 (40%), Gaps = 48/198 (24%)

Query: 140 DQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDI 199
           D +  RGI V +    +++ VAEF +   +   RR  +      +G      T+      
Sbjct: 89  DAVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTR---RGG 145

Query: 200 IGLNGSTVGIVG-------------------------------TELGAQLVPLDTLCAQS 228
            GL G TVGIVG                                 LG +LV LD L A+S
Sbjct: 146 RGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGVELVSLDELLARS 205

Query: 229 DFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD 275
           D + +   LT +T  +I  +               RG L+D+ AL+  LR  ++  A LD
Sbjct: 206 DVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRL-RAALD 264

Query: 276 VMIPEPMPADHPLVQLDN 293
           V  PEP+P D PL  L N
Sbjct: 265 VTDPEPLPPDSPLRTLPN 282

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  107 bits (270), Expect = 2e-27
 Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 59/240 (24%)

Query: 105 VSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRV-GTVGPVSSDAVAEF 163
           V      E  +    A+K LK+I   S G DHL L+++   G+ V    G  +S AVAE 
Sbjct: 45  VGGRLTKEEALA---ALKRLKLIQVPSAGVDHLPLERLPE-GVVVANNHG--NSPAVAEH 98

Query: 164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-----ELGAQL 218
            + L +A+++R  +  N +  G W  +  +   S    L G TVGI+G      E+   L
Sbjct: 99  ALALILALAKRIVEYDNDLRRGIWHGRAGEEPESKE--LRGKTVGILGYGHIGREIARLL 156

Query: 219 VP--------------------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-- 250
                                       LD    Q+D + V   LTK T  LIG  +   
Sbjct: 157 KAFGMRVIGVSRSPKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAA 216

Query: 251 -----------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP------MPADHPLVQLDN 293
                      RG ++D+EAL E L+++ I GA +DV    P       P+ +P  +L N
Sbjct: 217 MKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPN 276

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  107 bits (269), Expect = 3e-27
 Identities = 65/217 (29%), Positives = 90/217 (41%), Gaps = 55/217 (25%)

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRV-GTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           NLK++ T  + +  + L   K RGI V GT G     A AE    L +A++R   +    
Sbjct: 69  NLKLLVTTGMRNASIDLAAAKERGIVVCGTGG--GPTATAELTWALILALARNLPEEDAA 126

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVG------------------------------ 211
           + +G W     QT  +   GL G T+GIVG                              
Sbjct: 127 LRAGGW-----QT--TLGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNLTAER 179

Query: 212 -TELGAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
               G +  V  + L A SD + +   L+  T  L+G +               RG L+D
Sbjct: 180 AAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVD 239

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           + AL+  LR  +I GA LDV   EP+PADHPL  L N
Sbjct: 240 EGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPN 276

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  104 bits (263), Expect = 3e-26
 Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 52/219 (23%)

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
            +LK+I+    G+D + +D +  RGI+V        +A A+  + L +   R F +    
Sbjct: 75  PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERS 134

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVG------------------------TELGAQ 217
             +G+W   +    ++      G T+GI+G                        + L  +
Sbjct: 135 ARAGKW---RGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEE 191

Query: 218 L--------VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
           L        V LD L AQSD + + C LT  T  LI +K+F             RG ++D
Sbjct: 192 LEKALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVID 251

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMP----ADHPLVQL 291
           ++ALV+ L   K+  AGLDV   EP         P V L
Sbjct: 252 EDALVDALESGKVASAGLDVFENEPEVNPGLLKMPNVTL 290

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  104 bits (262), Expect = 5e-26
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 52/197 (26%)

Query: 125 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIAS 184
           K+I+    G +++ L   K  GI V  V   S  AVAE  + L +A++R+  + +N +  
Sbjct: 70  KLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVRE 129

Query: 185 GEWALKQTQTVISDIIG--LNGSTVGIVGT------------------------------ 212
           G ++L         ++G  L+G TVG++GT                              
Sbjct: 130 GNFSL-------DGLLGFDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYDPYPNPELA 182

Query: 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
           +LG + V LD L A+SD I + C LT +T  LI  +               RGGL+D +A
Sbjct: 183 KLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKA 242

Query: 260 LVEFLRDKKIGGAGLDV 276
           L+E L+  KIGG GLDV
Sbjct: 243 LIEALKSGKIGGLGLDV 259

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  101 bits (255), Expect = 3e-25
 Identities = 49/182 (26%), Positives = 67/182 (36%), Gaps = 50/182 (27%)

Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG----- 211
           ++ VAE  + L +A  R+         +  W           +  L GSTV IVG     
Sbjct: 84  AETVAEHALALLLAGLRQL---PARARATTWD---PAEEDDLVTLLRGSTVAIVGAGGIG 137

Query: 212 TELGAQLVP--------------------------LDTLCAQSDFIFVTCALTKDTEQLI 245
             L   L P                          LD +   +D + +   LT +T  L+
Sbjct: 138 RALIPLLAPFGAKVIAVNRSGRPVEGADETVPADRLDEVWPDADHVVLAAPLTPETRHLV 197

Query: 246 GRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLD 292
                             RG L+D +ALV+ LR  +I GA LDV  PEP+P  HPL  L 
Sbjct: 198 DAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGHPLWSLP 257

Query: 293 NC 294
           N 
Sbjct: 258 NA 259

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  100 bits (252), Expect = 1e-24
 Identities = 64/235 (27%), Positives = 94/235 (40%), Gaps = 69/235 (29%)

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            LK+I+T S G DH+ L+  + RGI V  V       VAE    L +A+SR+ ++     
Sbjct: 63  RLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERT 122

Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------ 212
             G+++    +        L G T+G+VGT                              
Sbjct: 123 RRGDFSQAGLRG-----FELAGKTLGVVGTGRIGRRVARIARGFGMKVLAYDVVPDEELA 177

Query: 213 -ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
             LG + V L+ L  +SD I +    T  T  LI R+ F             RG ++D E
Sbjct: 178 ERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTE 237

Query: 259 ALVEFLRDKKIGGAGLDV------MIPE--------------PMPADHPLVQLDN 293
           ALV  L++ K+ GAGLDV      +  E               + ADH L++  N
Sbjct: 238 ALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALLRKPN 292

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 99.0 bits (247), Expect = 4e-24
 Identities = 75/252 (29%), Positives = 115/252 (45%), Gaps = 50/252 (19%)

Query: 84  HDHLHLDQIKSR--GIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQ 141
           HD    +Q+  R  G +V     V+ DA A     LA A   LK+I   + G +++ L  
Sbjct: 31  HDATTPEQVAERLRGAQVAISNKVALDAAA-----LA-AAPQLKLILVAATGTNNVDLAA 84

Query: 142 IKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISD--I 199
            + RGI V       + +VA+  + L +A++ R       +A+G W  + +Q  + D  I
Sbjct: 85  ARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQ-QSSQFCLLDFPI 143

Query: 200 IGLNGSTVGIVGT-ELG----------------AQL---------VPLDTLCAQSDFIFV 233
           + L G T+G++G  ELG                 QL         +PLD L  Q D + +
Sbjct: 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTL 203

Query: 234 TCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280
            C LT+ T  LIG ++              RGGL+D++AL + LR   +GGA  DV+  E
Sbjct: 204 HCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVE 263

Query: 281 PMPADHPLVQLD 292
           P    +PL+  D
Sbjct: 264 PPVNGNPLLAPD 275

Length = 317

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 99.3 bits (248), Expect = 4e-24
 Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 61/265 (23%)

Query: 57  NPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIG 116
           +   +++KE L   G ++++++      +   L +  +  I       + ++ + +    
Sbjct: 10  DDELEIEKEILKAGGVDVEIVTYLLNDDETAELAK-GADAILTAFTDKIDAELLDKA--- 65

Query: 117 LAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ 176
                  LK IS  + G+D++ LD  K  GI V  V   S +AVAE  I L +A+ R   
Sbjct: 66  -----PGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRN-- 118

Query: 177 QGHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVGT---------------------- 212
                    +   K      + +IG  L   TVG+VGT                      
Sbjct: 119 -----RKYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYD 173

Query: 213 --------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------R 251
                   + G + V L+ L   SD I +   LT +   +I  + F             R
Sbjct: 174 PFRNPELEDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTAR 233

Query: 252 GGLLDQEALVEFLRDKKIGGAGLDV 276
           G L+D EAL+E L   KI GAGLDV
Sbjct: 234 GSLVDTEALIEALDSGKIFGAGLDV 258

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 97.3 bits (243), Expect = 2e-23
 Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 51/251 (20%)

Query: 45  IEKLKGCSALLCNPHQKVDKEALDESGE-NLKVISTFSVGHDHLHLDQIKSRGIRVGTVG 103
               +G   +      K+  E L++  E  +K IST S+G+DH+ LD  K  GI+V  V 
Sbjct: 39  AHLAEGYDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNV- 97

Query: 104 PVSSDAVAEFNIGLAI-AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE 162
             S ++VA++ + L + A++  K I   +  +D+  L  ++ R +R  TVG + +     
Sbjct: 98  TYSPNSVADYTVMLMLMALRKYKQIMKRAEVNDY-SLGGLQGRELRNLTVGVIGTG---- 152

Query: 163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGL----NGSTVGIVGTELGAQL 218
             IG A  V +    G  C                 I+      N         +  A+ 
Sbjct: 153 -RIGQA--VIKNLS-GFGC----------------KILAYDPYPNEEV------KKYAEY 186

Query: 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLR 265
           V LDTL  +SD I +   LT++T  LI ++               RG L+D EAL+E L 
Sbjct: 187 VDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLE 246

Query: 266 DKKIGGAGLDV 276
             KIGGA LDV
Sbjct: 247 SGKIGGAALDV 257

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score = 96.7 bits (241), Expect = 3e-23
 Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 51/218 (23%)

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            L+  ST SVG+D+  +D + +R I +     V ++ VA+  + L ++ +RR  +    +
Sbjct: 66  KLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERV 125

Query: 183 ASGEWALKQTQTVISDIIGLN--GSTVGIVG----------------------------- 211
            +GEW    T ++  D  G +    T+GIVG                             
Sbjct: 126 KAGEW----TASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK 181

Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
                  A+   LDTL  +SDF+ +   LT +T  L G +QF             RG ++
Sbjct: 182 EAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           D+ AL+  L+  +I  AGLDV   EP+  D PL+ L N
Sbjct: 242 DENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPN 279

Length = 323

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 66/221 (29%), Positives = 96/221 (43%), Gaps = 55/221 (24%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A   LKVI    VG D++ ++   +RGI V      ++ + AE  + + +A +R   Q  
Sbjct: 59  AAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQAD 118

Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
             +  GEW  K         +G  L G T+G++G                          
Sbjct: 119 ASLKEGEWDRKA-------FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI 171

Query: 212 -----TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RG 252
                 +LG +LV  LD L A++DFI V   LT +T  LIG ++              RG
Sbjct: 172 SPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARG 231

Query: 253 GLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           G++D+ AL E L +  +  A LDV   EP P D+PL  LDN
Sbjct: 232 GIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDN 271

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 93.4 bits (233), Expect = 4e-22
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 54/218 (24%)

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           KNLK I  +S G D+L L+ IK +GI +     + S  +AE+ +G  + + +  ++ +  
Sbjct: 59  KNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKN 118

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGA------------------------- 216
               +W +       S ++ L G T+  +GT  G+                         
Sbjct: 119 QKEKKWKMD------SSLLELYGKTILFLGT--GSIGQEIAKRLKAFGMKVIGVNTSGRD 170

Query: 217 -----QLVP---LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
                +  P   LD +  ++D +     LT++T  L     F             RG  +
Sbjct: 171 VEYFDKCYPLEELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSV 230

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           D++AL+E L++K+I GA LDV   EP+P D PL  LDN
Sbjct: 231 DEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDN 268

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 90.4 bits (225), Expect = 4e-21
 Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 43/216 (19%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
            + NLK+I   + G +++ ++  K +GI V  V   S+++VA+    + +++  R     
Sbjct: 60  QLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYD 119

Query: 180 NCIASGEWALKQTQTVISDIIG-LNGSTVGIVG------------TELGAQL-------- 218
             + SGE++     T IS  +G + G   GI+G               GA++        
Sbjct: 120 RYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGK 179

Query: 219 --------VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
                   V L+ L   SD I +   L + T+ LI  K+              RGG++++
Sbjct: 180 NKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNE 239

Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           + L + L +K I  AGLDV+  EPM  +HPL+ + N
Sbjct: 240 KDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKN 274

Length = 311

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 90.8 bits (226), Expect = 5e-21
 Identities = 56/212 (26%), Positives = 82/212 (38%), Gaps = 49/212 (23%)

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           KNLK+  T  +G DH+ L     RGI V  V   +  +VAE  + + + + R +  GH  
Sbjct: 83  KNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQ 142

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------- 212
              G W +     V+     L G TVG VG                              
Sbjct: 143 AIEGGWNVAD---VVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDRHRLPEE 199

Query: 213 ---ELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
              ELG      L+ + ++ D + + C L  +TE L  ++               RG + 
Sbjct: 200 VEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTARGKIC 259

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHP 287
           D+EA+ E L    + G   DV  P+P P DHP
Sbjct: 260 DREAVAEALESGHLAGYAGDVWFPQPAPKDHP 291

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 89.7 bits (223), Expect = 9e-21
 Identities = 73/302 (24%), Positives = 122/302 (40%), Gaps = 46/302 (15%)

Query: 3   KPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
           KPK+++T     +V P   ++L+   ++I+   ++  + R+  + + K    L+     +
Sbjct: 1   KPKVVITH----KVHPEVLELLKPHCEVISNQ-TDEPLSREELLRRCKDADGLMAFMPDR 55

Query: 62  VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           +D + LD     LK+I+    G+D+  ++   +RGI V  V  + ++  AE  IGL I +
Sbjct: 56  IDADFLDAC-PRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGL 114

Query: 122 KNLKVISTFSV--GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
               +     V  G       +    G+   TVG +   A+     G AIA  RR   G 
Sbjct: 115 GRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGAL-----GRAIA--RRL-SGF 166

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTK 239
                          +  D   L+ +        L  + V LD L   SDF+ +   LT 
Sbjct: 167 GA-----------TLLYYDPHPLDQAE----EQALNLRRVELDELLESSDFLVLALPLTP 211

Query: 240 DTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-AD 285
           DT  LI  +               RG ++D+ A+ E L+   +GG   DV   E     D
Sbjct: 212 DTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPD 271

Query: 286 HP 287
            P
Sbjct: 272 RP 273

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 87.9 bits (218), Expect = 5e-20
 Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 43/209 (20%)

Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
           LK+I+  + G +++ L   K  GI V  V   SS  V E  +G+  A+       +    
Sbjct: 66  LKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQL 125

Query: 184 SGEWALKQTQTVISD--IIGLNGSTVGIVG-----TELG--AQLV--------------- 219
           S  WA    Q    D  I  + GST+G+ G     TE+G  AQ +               
Sbjct: 126 SDRWA-TCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVC 184

Query: 220 -----PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALV 261
                P + +  Q+D + + C LT+ T+ LI  +               RG L+D++AL+
Sbjct: 185 REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALL 244

Query: 262 EFLRDKKIGGAGLDVMIPEPMPADHPLVQ 290
           + L + KI GA LDV++ EP   D+PL+Q
Sbjct: 245 DALENGKIAGAALDVLVKEPPEKDNPLIQ 273

Length = 314

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 85.5 bits (212), Expect = 3e-19
 Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 57/180 (31%)

Query: 155 VSSDAVAEFNIGLAIAVSRRFQQGHNCI---ASGEWALKQTQTVISDIIGLNGSTVGIVG 211
           V+++A+AEF +   +A ++R  +    I    + +W  +   ++        GST+GIVG
Sbjct: 94  VAAEAIAEFVLAAILAAAKRLPE----IWVKGAEQWRREPLGSL-------AGSTLGIVG 142

Query: 212 ------------TELGAQLVPL------------------DTLCAQSDFIFVTCALTKDT 241
                         LG +++ L                    L A+SD + +   LT +T
Sbjct: 143 FGAIGQALARRALALGMRVLALRRSGRPSDVPGVEAAADLAELFARSDHLVLAAPLTPET 202

Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
             LI                  RGGL+DQEAL+E L   +I  A LDV  PEP+P  HPL
Sbjct: 203 RHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEPLPEGHPL 262

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 84.6 bits (210), Expect = 9e-19
 Identities = 63/243 (25%), Positives = 87/243 (35%), Gaps = 72/243 (29%)

Query: 121 VKNLKVISTFSVGHDH-LHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           V NL+++  FS G DH L     K   + + T   +    +AE+ IG  + +S  F Q  
Sbjct: 52  VPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYI 111

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG------------TELGAQL--------- 218
                  W  +Q    + D     G  VGI+G              LG ++         
Sbjct: 112 ELQKEQTWGRRQEAYSVED---SVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRP 168

Query: 219 -----------VP---------------------LDTLCAQSDFIFVTCA-LTKDTEQLI 245
                      VP                     L     Q   + V    LT  T+ L+
Sbjct: 169 TPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPLTPATKHLL 228

Query: 246 GRKQF--------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL 291
           G ++F              RG L+D +ALV  L   +I GA LDV  PEP+PADHPL   
Sbjct: 229 GAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPADHPLWSA 288

Query: 292 DNC 294
            N 
Sbjct: 289 PNV 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 57/212 (26%), Positives = 82/212 (38%), Gaps = 49/212 (23%)

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
            NLK+  T  +G DH+ L      GI V  V   +S +VAE  + + +A+ R ++  H  
Sbjct: 113 PNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ 172

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------- 212
              G W +      +S    L G TVGIVG                              
Sbjct: 173 AVEGGWNIAD---CVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE 229

Query: 213 ---ELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
              ELG       D+L +  D + + C L  +TE L                   RG ++
Sbjct: 230 VEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIV 289

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHP 287
           D++A+V  L    + G   DV  P+P PADHP
Sbjct: 290 DRDAVVRALESGHLAGYAGDVWFPQPAPADHP 321

Length = 385

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 82.6 bits (205), Expect = 4e-18
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 51/200 (25%)

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            +K I+  S G D + LD  K  G+++  V   S  A+AEF +  A+ + R   +    +
Sbjct: 68  GIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRV 127

Query: 183 ASGEWALKQTQTVISDIIG--LNGSTVGIVGT------------ELGAQL---------- 218
           A G++           +IG  +   TVGI+GT              GA++          
Sbjct: 128 AKGDF------RWAPGLIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAYDPYPNPE 181

Query: 219 --------VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
                     L+ L  Q+D I +   LTK+   LI  + F             RGGL+D 
Sbjct: 182 LEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDT 241

Query: 258 EALVEFLRDKKIGGAGLDVM 277
           +AL++ L   KI GA LD  
Sbjct: 242 KALIDALDSGKIAGAALDTY 261

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 81.5 bits (202), Expect = 6e-18
 Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 51/216 (23%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A+  L+V+ T S G+D + L  +   G+ +     V   + AE  + L +A  R   +  
Sbjct: 57  ALPRLRVVQTLSAGYDGV-LPLLP-EGVTLCNARGVHDASTAELAVALILASLRGLPRFV 114

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG-----TELGAQLVP-------------- 220
              A G W  ++T +       L    V IVG       +  +L P              
Sbjct: 115 RAQARGRWEPRRTPS-------LADRRVLIVGYGSIGRAIERRLAPFEVRVTRVARTARP 167

Query: 221 ---------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
                    L  L  ++D + +   LT +T  L+  +               RG ++D +
Sbjct: 168 GEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTD 227

Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           ALV  L   ++  A LDV  PEP+P  HPL      
Sbjct: 228 ALVAELASGRLR-AALDVTDPEPLPPGHPLWSAPGV 262

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 74.9 bits (185), Expect = 1e-15
 Identities = 74/289 (25%), Positives = 112/289 (38%), Gaps = 67/289 (23%)

Query: 54  LLCNPHQKVDKEALDESGENLKVISTFSVGHDHLH--LDQIKSRGIRVGTVGPVSSDAVA 111
           LL N H   D E     G  ++ +   ++  D L   L  +   GIR  T   ++ + + 
Sbjct: 5   LLENIHPSAD-ELFRAGGIEVERLKG-ALDEDELIEALKDVHLLGIRSKTQ--LTEEVLE 60

Query: 112 EFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS-SDAVAEFNIGLAIA 170
                   A   L  I  F +G + + LD    RGI V    P S + +VAE  IG  I 
Sbjct: 61  --------AAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFN-APFSNTRSVAELVIGEIIM 111

Query: 171 VSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG-TELGAQL----------- 218
           ++RR    +     G W         +    + G T+GI+G   +G+QL           
Sbjct: 112 LARRLPDRNAAAHRGIW-----NKSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRV 166

Query: 219 ----------------VP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF----------- 250
                           V  L+ L A++DF+ +    T  T+ +IG ++            
Sbjct: 167 IFYDIAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILIN 226

Query: 251 --RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDN 293
             RG ++D +AL E LR   + GA +DV   EP     P   PL  L N
Sbjct: 227 ASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPN 275

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 73.7 bits (181), Expect = 7e-15
 Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 49/212 (23%)

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           KNL+++ T  +G DH+ L    + G+ V  V   +  +VAE  +   + + R F  G++ 
Sbjct: 120 KNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQ 179

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------- 212
           + SGEW       +      L G TVG VG                              
Sbjct: 180 VVSGEW---NVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE 236

Query: 213 ---ELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
              E GA+    LD +  + D + +   LT+ T  +  +++              RG ++
Sbjct: 237 LEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIM 296

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHP 287
           D +A+ +      IGG G DV  P+P P DHP
Sbjct: 297 DTQAVADACSSGHIGGYGGDVWYPQPAPKDHP 328

Length = 386

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 70.3 bits (173), Expect = 6e-14
 Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 67/218 (30%)

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRV-GTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
            +LK I+    G +++ +D    RGI V  T G  +++AVAE  I + +A+SR   Q   
Sbjct: 49  PSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGA-NANAVAELVIAMMLALSRNIIQAIK 107

Query: 181 CIASG---------EWALKQTQTVISDIIGLNGSTVGIVGTELGA--------------- 216
            + +G         E   KQ          L G T+G++G  LG                
Sbjct: 108 WVTNGDGDDISKGVEKGKKQ-----FVGTELRGKTLGVIG--LGNIGRLVANAALALGMK 160

Query: 217 ---------------------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF----- 250
                                ++  L+ L A +D+I +   LT +T  LI  +       
Sbjct: 161 VIGYDPYLSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKMKP 220

Query: 251 --------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280
                   RG ++D+EAL+E L + K+GG   D   P 
Sbjct: 221 GAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA 258

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 55/215 (25%), Positives = 83/215 (38%), Gaps = 65/215 (30%)

Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
                 +K + T +VG +H+ L+  K  G ++  V   S +A+AE    LA+ +SR    
Sbjct: 63  IYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHT-- 120

Query: 178 GHNCIASGEWALKQTQTVISDII--------GLNGSTVGIVGT------------ELGAQ 217
                     A   ++T   +           +  STVGI+GT             LGA+
Sbjct: 121 ----------AYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLFKGLGAK 170

Query: 218 -----------------LVPLDTLCAQSDFIFVTCALTK-DTEQLIGRKQF--------- 250
                             V LD L  +SD I +     K   ++LI  K+F         
Sbjct: 171 VIGYDIYPSDAAKDVVTFVSLDELLKKSDIISLHVPYIKGKNDKLIN-KEFISKMKDGAI 229

Query: 251 -----RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280
                RG L D+EA++E L   K+ G G DV+  E
Sbjct: 230 LINTARGELQDEEAILEALESGKLAGFGTDVLNNE 264

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 46/199 (23%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
              NLK I+    G +++ L+  K +GI +      + DAV E  +G+ +A+  +  +  
Sbjct: 59  KATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRAD 118

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
             + +G W  +  + V      L G TVGI+G                            
Sbjct: 119 QEVRNGIWDREGNRGV-----ELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNF 173

Query: 212 TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIG-------RKQF------RGGLLDQE 258
            +  A+ V L+TL  ++D + +   LT +T  ++        +K F      RG ++  +
Sbjct: 174 GDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTK 233

Query: 259 ALVEFLRDKKIGGAGLDVM 277
            LV+ L+  KI GA LDV+
Sbjct: 234 DLVKALKSGKILGACLDVL 252

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 69/282 (24%), Positives = 107/282 (37%), Gaps = 74/282 (26%)

Query: 19  AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS 78
           A ++   + ++   P   GR   +I  E LK    LL     KV++  L+ S   +K + 
Sbjct: 11  AEELFSPLGEVTYLP---GR---EITAEDLKDADVLLVRSVTKVNEALLEGS--KVKFVG 62

Query: 79  TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLH 138
           T ++G DH+  D +K RGI        ++++VAE+            V+S        L 
Sbjct: 63  TATIGTDHIDTDYLKERGIGFANAPGCNANSVAEY------------VLSALL----VLA 106

Query: 139 LDQIKS-RGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ-GHNCIASGEWALKQTQTVI 196
             Q  S +G  VG VG      V   N+G  +A  RR +  G N +       +      
Sbjct: 107 QRQGFSLKGKTVGIVG------VG--NVGSRLA--RRLEALGMNVLLCDPP--RAEA--- 151

Query: 197 SDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-- 250
                           E     V L+ L A++D I +   LT+D    T  L+       
Sbjct: 152 ----------------EGDPGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAA 195

Query: 251 -----------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
                      RG ++D +AL+  L+  K     LDV   EP
Sbjct: 196 LKPGQILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEP 237

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 56/223 (25%), Positives = 80/223 (35%), Gaps = 63/223 (28%)

Query: 116 GLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIR-VGTVGPVSSDAVAEFNIGLAIAVSRR 174
           GL   + NLK I +   G DHL  D      +  V  V P  +  +AE+ +   + + R 
Sbjct: 51  GLLARLPNLKAIFSLGAGVDHLLADPD-LPDVPIVRLVDPGLAQGMAEYVLAAVLRLHRD 109

Query: 175 F-----QQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-ELGA----QLVP---- 220
                 QQ       G W     Q   ++        VG++G  ELGA    +L      
Sbjct: 110 MDRYAAQQ-----RRGVWK-PLPQRPAAER------RVGVLGLGELGAAVARRLAALGFP 157

Query: 221 ----------------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------- 250
                                 LD   AQ+D +     LT +T  ++  +          
Sbjct: 158 VSGWSRSPKDIEGVTCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAA 217

Query: 251 -----RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
                RG  L +  L+  L    + GA LDV   EP+PADHPL
Sbjct: 218 LINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPL 260

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 43/176 (24%), Positives = 63/176 (35%), Gaps = 47/176 (26%)

Query: 160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALK----QTQTVISDIIGLNGSTVGIVG---- 211
           VAE  + L +A  RR  +         WA +    Q       +  L G+ V I G    
Sbjct: 95  VAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSI 154

Query: 212 --------TELGAQLVP------------------LDTLCAQSDFIFVTCALTKDTEQLI 245
                   T LGA++                    L  L  ++D + +    T  T   +
Sbjct: 155 GQRLAPLLTALGARVTGVARSAGERAGFPVVAEDELPELLPETDVLVMILPATPSTAHAL 214

Query: 246 GRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
             +               RG  +D++ALV  L   ++GGA LDV   EP+PA  PL
Sbjct: 215 DAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPL 270

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 52.5 bits (127), Expect = 9e-08
 Identities = 61/227 (26%), Positives = 87/227 (38%), Gaps = 65/227 (28%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS-SDAVAEFNIGLAIAVSRRFQQG 178
           A + L  I  F +G + + LD    RGI V    P S + +VAE  IG  I + R   + 
Sbjct: 72  AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFN-APFSNTRSVAELVIGEIILLLRGIPEK 130

Query: 179 HNCIASGEWALKQTQTVISDIIGLNGS------TVGIVG-----TELG------------ 215
           +     G W  K             GS      T+GIVG     T+L             
Sbjct: 131 NAKAHRGGW-NKSA----------AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF 179

Query: 216 -----------AQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------- 250
                      A+ V  L+ L AQSD + +    T  T+ +IG ++              
Sbjct: 180 YDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS 239

Query: 251 RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADH----PLVQLDN 293
           RG ++D +AL + L+   + GA +DV   EP         PL  LDN
Sbjct: 240 RGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDN 286

Length = 409

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 38/190 (20%)

Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ------Q 177
           +K I+  + G D   LD  K   I +  V   S + +AE+++ +A+ + RRF       Q
Sbjct: 70  IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129

Query: 178 GHNCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELGAQLV-----PLDTL------ 224
            H+     E   K  + +   IIG    G+    +    GA +      P   L      
Sbjct: 130 AHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYK 189

Query: 225 ------CAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLR 265
                    +D I +     K++  L  +  F             RG +++   L+  + 
Sbjct: 190 DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249

Query: 266 DKKIGGAGLD 275
           D  + GA +D
Sbjct: 250 DGTLLGAAID 259

Length = 330

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 15/80 (18%)

Query: 228 SDFIFVTCALTKDTEQLIGRKQF--------------RGGLLDQEALVEFLRDKKIGGAG 273
           +D + + C LTK+T  ++   +F              RGGLLD +A++  L    +GG  
Sbjct: 227 ADIVVLCCTLTKETAGIVN-DEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLA 285

Query: 274 LDVMIPEPMPADHPLVQLDN 293
           +DV   EP   D P+++  N
Sbjct: 286 IDVAWSEPFDPDDPILKHPN 305

Length = 347

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 48/218 (22%), Positives = 83/218 (38%), Gaps = 63/218 (28%)

Query: 125 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIAS 184
           K  S  +VG++++ ++     GI VG    V ++  AE    L++A +RR  +    + +
Sbjct: 88  KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147

Query: 185 GEWALKQTQTVISDIIGLNGSTVGIVG----------------------------TEL-- 214
           G +        + ++  L G TVG++G                            T L  
Sbjct: 148 GLYEGWLPHLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEK 205

Query: 215 ------------GAQLV------PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------ 250
                       G Q V       ++ +  ++D I +   L K T  LI +++       
Sbjct: 206 FVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKE 265

Query: 251 -------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
                  RG ++D+ ALVE L+   +   GLDV   EP
Sbjct: 266 AVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEP 303

Length = 386

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 68/202 (33%)

Query: 125 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIAS 184
           + + T ++G DHL LD     GI   +    ++  V ++ +G  + ++ R          
Sbjct: 60  RFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------- 109

Query: 185 GEWALKQTQTVISDIIGLNGSTVGIVGT-ELGAQL------------------------- 218
                        + + L   T G+VG   +G +L                         
Sbjct: 110 -------------EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDG 156

Query: 219 --VPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLDQEA 259
             V L+ +  + D I +   LTK+    T  L+                  RG ++D +A
Sbjct: 157 DFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQA 216

Query: 260 LVEFLRDKKIGGAGLDVMIPEP 281
           L E L   +   A LDV   EP
Sbjct: 217 LREALLSGEDLDAVLDVWEGEP 238

Length = 381

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 37/199 (18%)

Query: 104 PVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF 163
           P   DA A    G  +  K  K+I + S G DH+ +  I    +     G  S  +VAE 
Sbjct: 30  PDYYDAEAILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGAYSI-SVAEH 88

Query: 164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGL-----NGSTVGIVGTELGAQL 218
              L +A ++   + +  + +G +    T+ + +  +G+      G  V ++    G  +
Sbjct: 89  AFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNI 148

Query: 219 V-----------------PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF----------- 250
                             P D +  +SDF+ ++  LT +T  +I  K             
Sbjct: 149 YAYTRSYVNDGISSIYMEPEDIM-KKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIIN 207

Query: 251 --RGGLLDQEALVEFLRDK 267
             R  ++D+  ++ FLR+ 
Sbjct: 208 VARADVVDKNDMLNFLRNH 226

Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
KOG0068|consensus	406		100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069|consensus	336		100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.97
KOG0067|consensus	435		99.79
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.75
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.04
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.03
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.76
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.82
PLN02494	477	adenosylhomocysteinase	97.81
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.75
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.39
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.05
PRK12480	330	D-lactate dehydrogenase; Provisional	96.92
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.68
PLN03139	386	formate dehydrogenase; Provisional	96.24
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.16
PRK13243	333	glyoxylate reductase; Reviewed	96.08
PRK06932	314	glycerate dehydrogenase; Provisional	95.93
PRK06487	317	glycerate dehydrogenase; Provisional	95.92
PRK08605	332	D-lactate dehydrogenase; Validated	95.78
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.66
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.43
PRK07574	385	formate dehydrogenase; Provisional	95.34
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.3
PRK05225	487	ketol-acid reductoisomerase; Validated	95.23
PLN02928	347	oxidoreductase family protein	95.08
KOG0069|consensus	336		95.06
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.04
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.97
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.95
KOG0067|consensus	435		94.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	93.88
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	93.87
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	93.79
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.57
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	93.0
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	92.35
PRK02261	137	methylaspartate mutase subunit S; Provisional	92.35
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.66
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	91.28
PLN02306	386	hydroxypyruvate reductase	89.12
PRK09189	240	uroporphyrinogen-III synthase; Validated	89.04
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	88.92
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	88.76
PRK06436	303	glycerate dehydrogenase; Provisional	88.66
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.44
KOG0068|consensus	406		88.38
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	86.75
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	86.0
PRK05752	255	uroporphyrinogen-III synthase; Validated	85.96
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	85.43
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	85.24
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	85.12
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	84.88
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	84.81
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.1
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	84.04
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.92
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	81.57
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	80.62
PLN02712	667	arogenate dehydrogenase	80.01

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=2e-51  Score=380.66  Aligned_cols=234  Identities=30%  Similarity=0.493  Sum_probs=197.9

Q ss_pred             CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      |||||++++ ++  ++..+.|++.+++..++... ..+.+++.+.++++|+++++. .++++++|+++ |+||+|+++++
T Consensus         2 ~~~vl~~~~-~~--~~~~~~l~~~~~v~~~~~~~-~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~   75 (323)
T PRK15409          2 KPSVILYKA-LP--DDLLQRLEEHFTVTQVANLS-PETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISV   75 (323)
T ss_pred             CceEEEeCC-CC--HHHHHHHHhcCcEEEcCCCC-CCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECce
Confidence            699999995 77  78888888878887654321 346788999999999999763 58999999976 67777777777


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|+||++.++++||.|+|+                                                  |++++++|||
T Consensus        76 G~d~id~~~~~~~gI~V~n~--------------------------------------------------~~~~~~~VAE  105 (323)
T PRK15409         76 GYDNFDVDALTARKILLMHT--------------------------------------------------PTVLTETVAD  105 (323)
T ss_pred             ecccccHHHHHHCCCEEEeC--------------------------------------------------CCCCchHHHH
Confidence            77777666666555555555                                                  8899999999


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------------
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------  212 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------------  212 (294)
                      |++++||++.|++..+++.+++|+|.........|  .+|+|||+||||+                              
T Consensus       106 ~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g--~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~  183 (323)
T PRK15409        106 TLMALVLSTARRVVEVAERVKAGEWTASIGPDWFG--TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA  183 (323)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHcCCCcccCcccccc--CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh
Confidence            99999999999999999999999996432222346  8999999999999                              


Q ss_pred             --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                        ..+.++.+|++++++||+||+|||+|++|+||||++.|             ||++|||+||++||++|+|+||+||||
T Consensus       184 ~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf  263 (323)
T PRK15409        184 EERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVF  263 (323)
T ss_pred             HHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence              11334568999999999999999999999999999999             999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcCCCCC
Q psy5259         278 IPEPMPADHPLVQLDNC  294 (294)
Q Consensus       278 ~~EP~~~~~~l~~~~nv  294 (294)
                      ++||++.++|||++|||
T Consensus       264 ~~EP~~~~~pL~~~~nv  280 (323)
T PRK15409        264 EQEPLSVDSPLLSLPNV  280 (323)
T ss_pred             CCCCCCCCchhhcCCCE
Confidence            99999999999999996

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-50  Score=374.32  Aligned_cols=232  Identities=32%  Similarity=0.471  Sum_probs=194.6

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      +++++++.+.+ +.  +..++.+.+..++......  ..+.+++.+.++++|+++. +.+++++++++.+ |+||+|++.
T Consensus         1 ~~~~~vl~~~~-~~--~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~   73 (324)
T COG0111           1 KMMIKVLVTDP-LA--PDALEELLAAYDVEVPDGP--DLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRA   73 (324)
T ss_pred             CCcceeeccCc-cC--HHHHHHHHhcccccccccc--ccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEc
Confidence            46889999985 77  8888877765333332222  3567788999999999998 7889999999986 677777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|+||+++++++||.|+|+                                                  |+.++.+|
T Consensus        74 g~Gvd~id~~~~~~~gi~V~na--------------------------------------------------p~~na~~v  103 (324)
T COG0111          74 GAGVDNIDLEAATKRGILVVNA--------------------------------------------------PGGNAISV  103 (324)
T ss_pred             cccccccCHHHHhhcCCEEEeC--------------------------------------------------CCcchHHH
Confidence            7777776666666555555555                                                  99999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E------  213 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~------  213 (294)
                      |||+++++|++.|++..+++.++.|.|.+.   ...|  .+|+|||+||||+                     +      
T Consensus       104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~---~~~g--~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~  178 (324)
T COG0111         104 AELVLALLLALARRIPDADASQRRGEWDRK---AFRG--TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE  178 (324)
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHcCCcccc---cccc--ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh
Confidence            999999999999999999999999999862   1345  7999999999999                     0      


Q ss_pred             ----C-CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259         214 ----L-GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD  275 (294)
Q Consensus       214 ----~-~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LD  275 (294)
                          . .....+|+++|++||||++|+|+|++|+||||++.|             ||++||++||++||++|+|+||+||
T Consensus       179 ~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lD  258 (324)
T COG0111         179 RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALD  258 (324)
T ss_pred             hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEec
Confidence                1 122357999999999999999999999999999999             9999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcCCCCC
Q psy5259         276 VMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       276 V~~~EP~~~~~~l~~~~nv  294 (294)
                      ||++||+|++||||++|||
T Consensus       259 Vf~~EPl~~~~pL~~~pnV  277 (324)
T COG0111         259 VFEEEPLPADSPLWDLPNV  277 (324)
T ss_pred             CCCCCCCCCCChhhcCCCe
Confidence            9999999999999999997

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=5.6e-50  Score=369.79  Aligned_cols=234  Identities=39%  Similarity=0.642  Sum_probs=204.3

Q ss_pred             CCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         2 ~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      +|++++.+. .++  ++..+++.+.|++..++......+  ++.+.++++|++++....++++++++++ |+||+|++++
T Consensus         1 mk~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~   74 (324)
T COG1052           1 MKIVVLSTR-KLP--PEVLERLKEKFEVERYEDDLTPDT--ELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRS   74 (324)
T ss_pred             CCcEEEecC-cCC--HHHHHHhhccEEEEEeccCCccch--HHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEec
Confidence            478888888 488  888999999999988876421222  6678899999999988889999999998 8898888888


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA  161 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA  161 (294)
                      +||||||++.++++||.|+|+                                                  |+++.++||
T Consensus        75 ~G~D~vDl~aa~~~gI~Vtnv--------------------------------------------------p~~~t~sVA  104 (324)
T COG1052          75 AGYDNVDLEAAKERGITVTNV--------------------------------------------------PGYSTEAVA  104 (324)
T ss_pred             cccCcccHHHHHHCCcEEEeC--------------------------------------------------CCCCchHHH
Confidence            888888888887777766666                                                  888888889


Q ss_pred             HHHHHHHHHHhcCchhhhhhHhcCCCCccc-cccccccccCcCCCEEEEEcc----------------------------
Q psy5259         162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQ-TQTVISDIIGLNGSTVGIVGT----------------------------  212 (294)
Q Consensus       162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~g~~~~l~gktvgIiG~----------------------------  212 (294)
                      ||+++++|++.|++.++++.+++|.|..+. .....|  ++++|||+||+|+                            
T Consensus       105 e~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~--~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~  182 (324)
T COG1052         105 EHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLG--FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE  182 (324)
T ss_pred             HHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccc--cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChH
Confidence            999999999999999999999999998753 233566  8999999999999                            


Q ss_pred             ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                         ..+.++.+|+|++++||+||+|||+|++|+||||++.|             ||++|||+||++||++|+|+||||||
T Consensus       183 ~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV  262 (324)
T COG1052         183 AEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDV  262 (324)
T ss_pred             HHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeee
Confidence               12356778999999999999999999999999999999             99999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCCCC
Q psy5259         277 MIPEPMPADHPLVQLDN  293 (294)
Q Consensus       277 ~~~EP~~~~~~l~~~~n  293 (294)
                      |++||.+.++||++++|
T Consensus       263 ~e~Ep~~~d~~l~~l~~  279 (324)
T COG1052         263 FENEPALFDHPLLRLDN  279 (324)
T ss_pred             cCCCCCCCChhHhhccC
Confidence            99999888899999887

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-49  Score=364.17  Aligned_cols=230  Identities=28%  Similarity=0.460  Sum_probs=191.4

Q ss_pred             eEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccC
Q psy5259           5 KLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGH   84 (294)
Q Consensus         5 kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~   84 (294)
                      ||+++++ .+..+..++.|++.+++..++.    .+.+++.+.++++|+++++ ..++++++|+.+ |+||+|++.++|+
T Consensus         2 ki~~~~~-~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~   74 (311)
T PRK08410          2 KIVILDA-KTLGDKDLSVFEEFGDFQIYPT----TSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGT   74 (311)
T ss_pred             eEEEEec-CCCChhhHHHHhhCceEEEeCC----CCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEccccc
Confidence            5777764 2222677888888777766532    3568899999999999886 568999999986 6787777777777


Q ss_pred             cccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHH
Q psy5259          85 DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN  164 (294)
Q Consensus        85 d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~a  164 (294)
                      |+||++.++++||.|+|+                                                  |++++.+||||+
T Consensus        75 d~id~~~~~~~gI~v~n~--------------------------------------------------~g~~~~~VAE~a  104 (311)
T PRK08410         75 NNVDIEYAKKKGIAVKNV--------------------------------------------------AGYSTESVAQHT  104 (311)
T ss_pred             ccccHHHHHhCCCEEEcC--------------------------------------------------CCCCChHHHHHH
Confidence            777777776666666555                                                  888999999999


Q ss_pred             HHHHHHHhcCchhhhhhHhcCCCCcccccc---ccccccCcCCCEEEEEcc---------------------c-------
Q psy5259         165 IGLAIAVSRRFQQGHNCIASGEWALKQTQT---VISDIIGLNGSTVGIVGT---------------------E-------  213 (294)
Q Consensus       165 l~l~l~~~r~~~~~~~~~~~~~w~~~~~~~---~~g~~~~l~gktvgIiG~---------------------~-------  213 (294)
                      ++++|++.|++..+++.+++|.|.......   ..+  ++|+|||+||||+                     +       
T Consensus       105 ~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~--~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~  182 (311)
T PRK08410        105 FAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPL--GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN  182 (311)
T ss_pred             HHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccc--cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc
Confidence            999999999999999999999997532111   113  7899999999999                     1       


Q ss_pred             CCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259         214 LGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE  280 (294)
Q Consensus       214 ~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~E  280 (294)
                      .+.++++|++++++||+||+|||+|++|+||||++.|             ||++|||+||++||++|+|+ |+||||++|
T Consensus       183 ~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~E  261 (311)
T PRK08410        183 EEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKE  261 (311)
T ss_pred             cCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCC
Confidence            1234568999999999999999999999999999999             99999999999999999999 999999999


Q ss_pred             CCCCCCCCcCC---CCC
Q psy5259         281 PMPADHPLVQL---DNC  294 (294)
Q Consensus       281 P~~~~~~l~~~---~nv  294 (294)
                      |+++++|||++   |||
T Consensus       262 P~~~~~pL~~~~~~~Nv  278 (311)
T PRK08410        262 PMEKNHPLLSIKNKEKL  278 (311)
T ss_pred             CCCCCChhhccCCCCCE
Confidence            99999999997   786

>KOG0068|consensus

Probab=100.00  E-value=5.9e-49  Score=353.15  Aligned_cols=228  Identities=32%  Similarity=0.552  Sum_probs=199.9

Q ss_pred             eEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259           5 KLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG   83 (294)
Q Consensus         5 kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G   83 (294)
                      +||+++ ++.  +..++.|++. ++++.+..    .+.|++++.++++|++++++.+++++++|+....+||+|+.+   
T Consensus         8 ~il~~e-~~~--~~~~~~l~~~g~~v~~~~~----~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgra---   77 (406)
T KOG0068|consen    8 KILVAE-SLD--QACIEILKDNGYQVEFKKN----LSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRA---   77 (406)
T ss_pred             eEEEec-ccc--hHHHHHHHhcCceEEEecc----CCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEec---
Confidence            699999 588  9999999995 58877654    678899999999999999999999999999554455555554   


Q ss_pred             CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259          84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF  163 (294)
Q Consensus        84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~  163 (294)
                                                                     ++|+|++|++++.++||.|.|+|.+|+.++||+
T Consensus        78 -----------------------------------------------g~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEl  110 (406)
T KOG0068|consen   78 -----------------------------------------------GIGVDNVDLKAATENGILVVNTPTANSRSAAEL  110 (406)
T ss_pred             -----------------------------------------------ccCccccChhhHHhCCeEEEeCCCCChHHHHHH
Confidence                                                           555555555555566666666699999999999


Q ss_pred             HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------------------------
Q psy5259         164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------------------------  212 (294)
Q Consensus       164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------------------------  212 (294)
                      ++++++++.|++.+....++.|+|++..   ..|  .+++|||+||+|+                               
T Consensus       111 tigli~SLaR~i~~A~~s~k~g~wnr~~---~~G--~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~  185 (406)
T KOG0068|consen  111 TIGLILSLARQIGQASASMKEGKWNRVK---YLG--WELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAE  185 (406)
T ss_pred             HHHHHHHHhhhcchhheeeecCceeecc---eee--eEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHH
Confidence            9999999999999999999999998753   456  9999999999999                               


Q ss_pred             cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259         213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIP  279 (294)
Q Consensus       213 ~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~  279 (294)
                      .+|++.++++|+|+.||||++|||+||+|++|+|.+.|             ||.+|||+||++||++|+++|||+|||+.
T Consensus       186 a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~  265 (406)
T KOG0068|consen  186 AFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPE  265 (406)
T ss_pred             hccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccC
Confidence            56888999999999999999999999999999999999             99999999999999999999999999999


Q ss_pred             CCCCC--CCCCcCCCCC
Q psy5259         280 EPMPA--DHPLVQLDNC  294 (294)
Q Consensus       280 EP~~~--~~~l~~~~nv  294 (294)
                      ||+..  ++.|.+||||
T Consensus       266 Epp~~~~~~~Lv~hpnV  282 (406)
T KOG0068|consen  266 EPPKNGWDSELVSHPNV  282 (406)
T ss_pred             CCCccchhHHHhcCCce
Confidence            99665  7899999997

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=4.5e-48  Score=360.14  Aligned_cols=235  Identities=32%  Similarity=0.618  Sum_probs=197.9

Q ss_pred             CCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         2 ~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      |||||+++.+ ++  ++..+.|++.+++..+.... ..+.+++.+.++++|+++++...++++++++++ |+||+|++++
T Consensus         1 ~~~kil~~~~-~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~   75 (333)
T PRK13243          1 MKPKVFITRE-IP--ENGIEMLEEHFEVEVWEDER-EIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYA   75 (333)
T ss_pred             CCceEEEECC-CC--HHHHHHHhcCceEEEecCCC-CCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecC
Confidence            3699999984 76  77778888877776553321 357788999999999999876668999999986 7788888877


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA  161 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA  161 (294)
                      +|+|+||++.++++||.|+|+                                                  +|+++.+||
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~--------------------------------------------------~g~~~~~vA  105 (333)
T PRK13243         76 VGYDNIDVEEATRRGIYVTNT--------------------------------------------------PGVLTEATA  105 (333)
T ss_pred             ccccccCHHHHHHcCCEEEEC--------------------------------------------------CCCChHHHH
Confidence            777777777777666666555                                                  888999999


Q ss_pred             HHHHHHHHHHhcCchhhhhhHhcCCCCccc----cccccccccCcCCCEEEEEcc-------------------------
Q psy5259         162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQ----TQTVISDIIGLNGSTVGIVGT-------------------------  212 (294)
Q Consensus       162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~----~~~~~g~~~~l~gktvgIiG~-------------------------  212 (294)
                      ||++++||++.|++..+++.+++|.|.+..    .....|  ++|+|||+||||+                         
T Consensus       106 E~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g--~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  183 (333)
T PRK13243        106 DFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLG--YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR  183 (333)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccc--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            999999999999999999999999997421    111245  8999999999999                         


Q ss_pred             ------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEE
Q psy5259         213 ------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG  273 (294)
Q Consensus       213 ------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~  273 (294)
                            ..+..+.++++++++||+|++|+|+|++|+++||++.|             ||++||++||++||++|+|+||+
T Consensus       184 ~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAa  263 (333)
T PRK13243        184 KPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAG  263 (333)
T ss_pred             ChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEE
Confidence                  11234568999999999999999999999999999888             99999999999999999999999


Q ss_pred             eeCCCCCCCCCCCCCcCCCCC
Q psy5259         274 LDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       274 LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      ||||++||++ ++|||++|||
T Consensus       264 LDV~~~EP~~-~~pL~~~~nv  283 (333)
T PRK13243        264 LDVFEEEPYY-NEELFSLKNV  283 (333)
T ss_pred             eccCCCCCCC-CchhhcCCCE
Confidence            9999999988 8999999996

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-47  Score=365.06  Aligned_cols=232  Identities=29%  Similarity=0.421  Sum_probs=195.7

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhc-cc-eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILED-MF-DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS   78 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~-~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~   78 (294)
                      |+||||++++ +++  ++..+.|++ .+ ++..++.   ..+.+++.+.++++|++++++..++++++|+.+ |+||+|+
T Consensus         8 ~~~~~ili~~-~~~--~~~~~~l~~~~~~~v~~~~~---~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~   80 (409)
T PRK11790          8 KDKIKFLLLE-GVH--QSAVEVLRAAGYTNIEYHKG---ALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIG   80 (409)
T ss_pred             CCCeEEEEEC-CCC--HHHHHHHHhcCCceEEECCC---CCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEE
Confidence            4678999998 477  777888877 46 7766543   357788999999999998876678999999876 6777777


Q ss_pred             eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259          79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD  158 (294)
Q Consensus        79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~  158 (294)
                      ++++|+|+||++.++++||.|+|+                                                  |++++.
T Consensus        81 ~~~~G~d~id~~~~~~~gI~V~n~--------------------------------------------------pg~~~~  110 (409)
T PRK11790         81 CFCIGTNQVDLDAAAKRGIPVFNA--------------------------------------------------PFSNTR  110 (409)
T ss_pred             ECceecccccHHHHHhCCCEEEeC--------------------------------------------------CCCChH
Confidence            777777777777666666555555                                                  889999


Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c----
Q psy5259         159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E----  213 (294)
Q Consensus       159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~----  213 (294)
                      +||||+++++|++.|++..+++.+++|.|....   ..|  ++|.|||+||||+                     +    
T Consensus       111 aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~---~~~--~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~  185 (409)
T PRK11790        111 SVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA---AGS--FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDK  185 (409)
T ss_pred             HHHHHHHHHHHHHHcChHHHHHHHHcCcccccc---cCc--ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            999999999999999999999999999997532   235  8999999999999                     1    


Q ss_pred             ---CCCcc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         214 ---LGAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       214 ---~~~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                         .++.+ .+|+|++++||+|++|||+|++|+||||++.|             ||++||++||++||++|+|+||+|||
T Consensus       186 ~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV  265 (409)
T PRK11790        186 LPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDV  265 (409)
T ss_pred             cccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcC
Confidence               11222 38999999999999999999999999999999             99999999999999999999999999


Q ss_pred             CCCCCCCC----CCCCcCCCCC
Q psy5259         277 MIPEPMPA----DHPLVQLDNC  294 (294)
Q Consensus       277 ~~~EP~~~----~~~l~~~~nv  294 (294)
                      |++||++.    ++|||++|||
T Consensus       266 f~~EP~~~~~~~~~pL~~~~nv  287 (409)
T PRK11790        266 FPVEPKSNGDPFESPLRGLDNV  287 (409)
T ss_pred             CCCCCCCccccccchhhcCCCE
Confidence            99999886    4799999996

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-47  Score=354.12  Aligned_cols=232  Identities=27%  Similarity=0.474  Sum_probs=187.9

Q ss_pred             eEEEecCC-CCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           5 KLLLTRND-YPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         5 kvl~~~~~-~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      ||++++.. ++..+...+.|++. .++..+..    .+.+++.+.++++|+++++ ..++++++++.+ |+||+|++.++
T Consensus         2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~   75 (317)
T PRK06487          2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDA----TTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAAT   75 (317)
T ss_pred             eEEEEccccCCccccchhHHHhhCCeEEEecC----CCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCc
Confidence            47777631 22124555667654 35544432    4678889999999998876 468999999876 77877777777


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|++|++.++++||.|+|+                                                  +++++.+|||
T Consensus        76 G~d~id~~~~~~~gI~v~n~--------------------------------------------------~g~~~~~vAE  105 (317)
T PRK06487         76 GTNNVDLAAARERGITVCNC--------------------------------------------------QGYGTPSVAQ  105 (317)
T ss_pred             cccccCHHHHHHCCCEEEeC--------------------------------------------------CCCCcchHHH
Confidence            77777777766666655555                                                  8889999999


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCCccccc---cccccccCcCCCEEEEEcc------------cC-------------
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQ---TVISDIIGLNGSTVGIVGT------------EL-------------  214 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~---~~~g~~~~l~gktvgIiG~------------~~-------------  214 (294)
                      |++++||++.|++..+++.+++|.|......   ...+  ++|+|||+||+|+            .+             
T Consensus       106 ~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~--~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~  183 (317)
T PRK06487        106 HTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPI--VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP  183 (317)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcc--cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc
Confidence            9999999999999999999999999754221   1123  7899999999999            11             


Q ss_pred             -CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259         215 -GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE  280 (294)
Q Consensus       215 -~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~E  280 (294)
                       ..++++|++++++||+||+|||+|++|+||||++.|             ||++|||+||++||++|+|+||+||||++|
T Consensus       184 ~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~E  263 (317)
T PRK06487        184 ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVE  263 (317)
T ss_pred             ccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence             123568999999999999999999999999999999             999999999999999999999999999999


Q ss_pred             CCCCCCCCcC--CCCC
Q psy5259         281 PMPADHPLVQ--LDNC  294 (294)
Q Consensus       281 P~~~~~~l~~--~~nv  294 (294)
                      |++.++|||+  +|||
T Consensus       264 P~~~~~pl~~~~~pnv  279 (317)
T PRK06487        264 PPVNGNPLLAPDIPRL  279 (317)
T ss_pred             CCCCCCchhhcCCCCE
Confidence            9999999995  8996

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-47  Score=353.22  Aligned_cols=202  Identities=30%  Similarity=0.484  Sum_probs=171.5

Q ss_pred             CCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHH
Q psy5259          39 MPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLA  118 (294)
Q Consensus        39 ~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~  118 (294)
                      .+.+++.+.++++|+++++ ..++++++|+.+ |+||+|++.++|+|+||.+.++++||.|+|+                
T Consensus        33 ~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~----------------   94 (314)
T PRK06932         33 TSAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNV----------------   94 (314)
T ss_pred             CChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeC----------------
Confidence            4678899999999998875 568999999976 6777777777777777766666555555555                


Q ss_pred             HHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccc---cc
Q psy5259         119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQ---TV  195 (294)
Q Consensus       119 l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~---~~  195 (294)
                                                        +++++.+||||+++++|++.|++..+++.++++.|......   ..
T Consensus        95 ----------------------------------~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~  140 (314)
T PRK06932         95 ----------------------------------TGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDY  140 (314)
T ss_pred             ----------------------------------CCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCC
Confidence                                              88999999999999999999999999999999999643211   01


Q ss_pred             cccccCcCCCEEEEEcc------------cCC---------------CcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259         196 ISDIIGLNGSTVGIVGT------------ELG---------------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK  248 (294)
Q Consensus       196 ~g~~~~l~gktvgIiG~------------~~~---------------~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~  248 (294)
                      .+  ++|+|||+||||+            .++               ..+.+|++++++||+||+|||+|++|+||||++
T Consensus       141 ~~--~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~  218 (314)
T PRK06932        141 PI--TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAE  218 (314)
T ss_pred             cc--cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHH
Confidence            23  7899999999999            111               124689999999999999999999999999999


Q ss_pred             cc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCc----CCCCC
Q psy5259         249 QF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV----QLDNC  294 (294)
Q Consensus       249 ~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~----~~~nv  294 (294)
                      .|             ||++|||+||++||++|+|+||+||||++||++.++|||    ++|||
T Consensus       219 ~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnv  281 (314)
T PRK06932        219 TLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNL  281 (314)
T ss_pred             HHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCE
Confidence            99             999999999999999999999999999999999999998    58996

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=4.9e-46  Score=351.25  Aligned_cols=237  Identities=22%  Similarity=0.356  Sum_probs=193.4

Q ss_pred             CCCeEEEecCCCCCCch-hHHHhhc-cceEEEcCCCCCCCCHHHHHHHc-cCCcEEEeCCCCCCCHHHHhhcCC-CceEE
Q psy5259           2 SKPKLLLTRNDYPRVSP-AYDILED-MFDIITYPISEGRMPRDIFIEKL-KGCSALLCNPHQKVDKEALDESGE-NLKVI   77 (294)
Q Consensus         2 ~k~kvl~~~~~~~~~~~-~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l-~~~d~~~~~~~~~~~~~~l~~~~~-~lk~i   77 (294)
                      .|++|+++.+ ++  +. ..+.|++ .++++.+.......+.+++.+.+ .++|+++++...++++++|+.++. +||+|
T Consensus        14 ~~~~v~~~~~-~~--~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I   90 (386)
T PLN02306         14 GKYRVVSTKP-MP--GTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF   90 (386)
T ss_pred             CCceEEEeCC-CC--cHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence            3789999984 76  53 5778877 47887554211135788898887 579999988667899999998732 35777


Q ss_pred             EeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCch
Q psy5259          78 STFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS  157 (294)
Q Consensus        78 ~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~  157 (294)
                      ++.++|+|+||+++++++||.|+|+                                                  +++++
T Consensus        91 ~~~~~G~D~iD~~aa~~~gI~V~n~--------------------------------------------------pg~~~  120 (386)
T PLN02306         91 SNMAVGYNNVDVEAANKYGIAVGNT--------------------------------------------------PGVLT  120 (386)
T ss_pred             EECCcccccccHHHHHHCCCEEEEC--------------------------------------------------CCcCH
Confidence            7777777777666666555555555                                                  88999


Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------cCCC--------
Q psy5259         158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------ELGA--------  216 (294)
Q Consensus       158 ~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------~~~~--------  216 (294)
                      .+||||++++||++.|++..+++.+++|.|..|......|  ++++|||+||||+             .++.        
T Consensus       121 ~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g--~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~  198 (386)
T PLN02306        121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG--NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC--cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCC
Confidence            9999999999999999999999999999997654332356  8999999999999             0110        


Q ss_pred             --------------------------c-ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCC
Q psy5259         217 --------------------------Q-LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD  256 (294)
Q Consensus       217 --------------------------~-~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvd  256 (294)
                                                + ..+|++++++||+|++|||+|++|+||||++.|             ||++||
T Consensus       199 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVD  278 (386)
T PLN02306        199 QSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVID  278 (386)
T ss_pred             CchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence                                      1 248999999999999999999999999999999             999999


Q ss_pred             HHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       257 e~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      |+||++||++|+|+||+||||++||++ ++|||++|||
T Consensus       279 e~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNV  315 (386)
T PLN02306        279 EVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNA  315 (386)
T ss_pred             HHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCE
Confidence            999999999999999999999999975 4799999996

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=5.1e-46  Score=347.88  Aligned_cols=227  Identities=22%  Similarity=0.399  Sum_probs=189.4

Q ss_pred             CCCCeEEEecCCCCCCch----hHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceE
Q psy5259           1 MSKPKLLLTRNDYPRVSP----AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKV   76 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~----~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~   76 (294)
                      |+|||||++.+ ..  +.    ..+.+++ +.+..+..    .+.+++.+.++++|+++++ ..++++++|+.+ |+||+
T Consensus        16 ~~~~~vl~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~----~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~   85 (347)
T PLN02928         16 MRPTRVLFCGP-EF--PASYSYTREYLQK-YPFIQVDA----VAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKL   85 (347)
T ss_pred             CCCCEEEEECC-Cc--hhHHHHHHHHhhc-CCeeEecC----CCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceE
Confidence            67999999985 33  32    2344433 33333332    4677889999999998876 458999999986 88888


Q ss_pred             EEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCC--
Q psy5259          77 ISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGP--  154 (294)
Q Consensus        77 i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~--  154 (294)
                      |++.++|+|++|++.+.++||.|+|+                                                  |+  
T Consensus        86 I~~~~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~  115 (347)
T PLN02928         86 IMQFGVGLEGVDVDAATKHGIKVARI--------------------------------------------------PSEG  115 (347)
T ss_pred             EEECCcccCcCcHHHHHhCCCEEEEC--------------------------------------------------CCCC
Confidence            88888888888888877777777776                                                  54  


Q ss_pred             -CchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC------
Q psy5259         155 -VSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG------  215 (294)
Q Consensus       155 -~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~------  215 (294)
                       .++.+||||+++++|++.|++..+.+.++++.|..     ..+  .+|+|||+||||+            .+|      
T Consensus       116 ~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~--~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~  188 (347)
T PLN02928        116 TGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIG--DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT  188 (347)
T ss_pred             CcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccc--cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE
Confidence             37899999999999999999999999999999954     234  7899999999999            000      


Q ss_pred             --------------------------CcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCC
Q psy5259         216 --------------------------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD  256 (294)
Q Consensus       216 --------------------------~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvd  256 (294)
                                                ..+.+|++++++||+|++|||+|++|+||||++.|             ||++||
T Consensus       189 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVd  268 (347)
T PLN02928        189 RRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLD  268 (347)
T ss_pred             CCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccC
Confidence                                      13458999999999999999999999999999999             999999


Q ss_pred             HHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       257 e~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      |+||++||++|+|+||+||||++||+++++|||++|||
T Consensus       269 e~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nv  306 (347)
T PLN02928        269 YDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNV  306 (347)
T ss_pred             HHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCE
Confidence            99999999999999999999999999999999999996

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-45  Score=345.34  Aligned_cols=219  Identities=28%  Similarity=0.461  Sum_probs=183.0

Q ss_pred             HHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCC
Q psy5259          20 YDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRG   96 (294)
Q Consensus        20 ~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~g   96 (294)
                      .+.|++ +++++.....  ..+.+++.+.++++|++++..  ..++++++|+.+ |+||+|++.++|+|+||++.+.++|
T Consensus        68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~g  144 (386)
T PLN03139         68 RDWLESQGHQYIVTDDK--EGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAG  144 (386)
T ss_pred             HHHHHhcCCeEEEeCCC--CCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCC
Confidence            344555 4788776543  357788999999999999863  247999999986 7777777777777777777666566


Q ss_pred             cEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCch
Q psy5259          97 IRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ  176 (294)
Q Consensus        97 I~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~  176 (294)
                      |.|+|+                                                  +|+++.+||||++++||++.|++.
T Consensus       145 I~V~n~--------------------------------------------------~g~na~sVAE~al~liL~l~R~~~  174 (386)
T PLN03139        145 LTVAEV--------------------------------------------------TGSNVVSVAEDELMRILILLRNFL  174 (386)
T ss_pred             eEEEEC--------------------------------------------------CCcCcHHHHHHHHHHHHHHHcCcH
Confidence            555555                                                  889999999999999999999999


Q ss_pred             hhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-----------CCCcc-cCHHH
Q psy5259         177 QGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-----------LGAQL-VPLDT  223 (294)
Q Consensus       177 ~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-----------~~~~~-~~l~e  223 (294)
                      .+++.+++|.|..... ...+  ++|.|||+||||+                     +           .++.+ .++++
T Consensus       175 ~~~~~~~~g~W~~~~~-~~~~--~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~e  251 (386)
T PLN03139        175 PGYHQVVSGEWNVAGI-AYRA--YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDA  251 (386)
T ss_pred             HHHHHHHhCCCccccc-cCCC--cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHH
Confidence            9999999999974221 1234  7999999999999                     1           12233 38999


Q ss_pred             HhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcC
Q psy5259         224 LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQ  290 (294)
Q Consensus       224 ll~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~  290 (294)
                      ++++||+|++|||+|++|+||||++.|             ||++||++||++||++|+|+||+||||++||+|+++|||+
T Consensus       252 ll~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~  331 (386)
T PLN03139        252 MLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY  331 (386)
T ss_pred             HHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhc
Confidence            999999999999999999999999988             9999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy5259         291 LDNC  294 (294)
Q Consensus       291 ~~nv  294 (294)
                      +|||
T Consensus       332 ~pNv  335 (386)
T PLN03139        332 MPNH  335 (386)
T ss_pred             CCCe
Confidence            9996

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=5.9e-45  Score=357.59  Aligned_cols=226  Identities=34%  Similarity=0.571  Sum_probs=192.0

Q ss_pred             eEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259           5 KLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG   83 (294)
Q Consensus         5 kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G   83 (294)
                      ||+++++ ++  ++..+.|++. +++....    ..+++++.+.++++|++++++..++++++|+.+ |+||+|++.++|
T Consensus         1 ~vli~~~-~~--~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G   72 (525)
T TIGR01327         1 KVLIADP-IS--PDGIDILEDVGVEVDVQT----GLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVG   72 (525)
T ss_pred             CEEEeCC-CC--HHHHHHHHhcCcEEEeCC----CCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcc
Confidence            5788884 76  7778888764 6776532    247789999999999999887779999999976 777777777777


Q ss_pred             CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259          84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF  163 (294)
Q Consensus        84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~  163 (294)
                      +|++|++.++++||.|+|+                                                  |++++.+||||
T Consensus        73 ~d~id~~~~~~~gI~V~n~--------------------------------------------------pg~~~~~vAE~  102 (525)
T TIGR01327        73 VDNIDIEAATARGILVVNA--------------------------------------------------PTGNTISAAEH  102 (525)
T ss_pred             cchhcHHHHHHCCCEEEeC--------------------------------------------------CCcChHHHHHH
Confidence            7777777666666655555                                                  88999999999


Q ss_pred             HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------------------------
Q psy5259         164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------------------------  212 (294)
Q Consensus       164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------------------------  212 (294)
                      ++++||++.|++..+++.+++|+|.+..   ..|  .+|+|||+||||+                               
T Consensus       103 ~~~l~L~~~R~~~~~~~~~~~g~W~~~~---~~g--~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~  177 (525)
T TIGR01327       103 ALAMLLAAARNIPQADASLKEGEWDRKA---FMG--TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAE  177 (525)
T ss_pred             HHHHHHHHhcCHHHHHHHHHcCCccccc---cCc--cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHH
Confidence            9999999999999999999999997532   346  8999999999999                               


Q ss_pred             cCCCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         213 ELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       213 ~~~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                      +.++++. ++++++++||+|++|||+|++|+||||++.|             ||++|||+||++||++|+|+||+||||+
T Consensus       178 ~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~  257 (525)
T TIGR01327       178 QLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFE  257 (525)
T ss_pred             hcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCC
Confidence            1122333 7999999999999999999999999999998             9999999999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCCC
Q psy5259         279 PEPMPADHPLVQLDNC  294 (294)
Q Consensus       279 ~EP~~~~~~l~~~~nv  294 (294)
                      +||+ +++|||++|||
T Consensus       258 ~EP~-~~~pL~~~~nv  272 (525)
T TIGR01327       258 KEPP-TDNPLFDLDNV  272 (525)
T ss_pred             CCCC-CCChhhcCCCe
Confidence            9995 57999999996

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=7.7e-45  Score=356.87  Aligned_cols=227  Identities=35%  Similarity=0.583  Sum_probs=193.7

Q ss_pred             CeEEEecCCCCCCchhHHHhhcc--ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDM--FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~--~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      |||+++++ ++  +..++.|++.  +++....    ..+.+++.+.++++|++++++..++++++|+.+ |+||+|++.+
T Consensus         1 m~ili~~~-~~--~~~~~~l~~~~~~~v~~~~----~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~   72 (526)
T PRK13581          1 MKVLVSDP-IS--PAGLEILKDAPGVEVDVKT----GLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAG   72 (526)
T ss_pred             CeEEEeCC-CC--HHHHHHHhccCCeEEEeCC----CCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECC
Confidence            47999984 76  7778888874  6666432    246788999999999999887678999999876 7777777777


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA  161 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA  161 (294)
                      +|+|++|+++++++||.|+|+                                                  |++++.+||
T Consensus        73 ~G~d~id~~~~~~~gI~V~n~--------------------------------------------------p~~~~~~vA  102 (526)
T PRK13581         73 VGVDNVDVPAATRRGIIVVNA--------------------------------------------------PTGNTISAA  102 (526)
T ss_pred             cccccccHHHHHHCCCEEEeC--------------------------------------------------CCCChHHHH
Confidence            777777777766666665555                                                  888999999


Q ss_pred             HHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-----------------------------
Q psy5259         162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-----------------------------  212 (294)
Q Consensus       162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-----------------------------  212 (294)
                      ||++++||++.|++..+++.+++|.|.+..   ..|  .+|+|||+||||+                             
T Consensus       103 E~~l~l~L~~~R~~~~~~~~~~~g~W~~~~---~~g--~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~  177 (526)
T PRK13581        103 EHTIALMLALARNIPQAHASLKAGKWERKK---FMG--VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER  177 (526)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHcCCCCccC---ccc--cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH
Confidence            999999999999999999999999997532   345  8999999999999                             


Q ss_pred             --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                        ..++++.++++++++||+|++|+|+|++|+|+||++.|             ||++|||+||++||++|+|+||+||||
T Consensus       178 ~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf  257 (526)
T PRK13581        178 AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVF  257 (526)
T ss_pred             HHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecC
Confidence              12334558999999999999999999999999999888             999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcCCCCC
Q psy5259         278 IPEPMPADHPLVQLDNC  294 (294)
Q Consensus       278 ~~EP~~~~~~l~~~~nv  294 (294)
                      ++||++ ++|||++|||
T Consensus       258 ~~EP~~-~~pL~~~~nv  273 (526)
T PRK13581        258 EKEPPT-DSPLFELPNV  273 (526)
T ss_pred             CCCCCC-CchhhcCCCe
Confidence            999976 8999999997

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=5.8e-45  Score=343.34  Aligned_cols=218  Identities=29%  Similarity=0.510  Sum_probs=183.0

Q ss_pred             HHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCc
Q psy5259          21 DILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGI   97 (294)
Q Consensus        21 ~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI   97 (294)
                      +.|++ +++++.....  ..+.+++.+.++++|++++++  ..++++++|+.+ |+||+|++.++|+|++|++.+.++||
T Consensus        62 ~~l~~~g~e~~~~~~~--~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI  138 (385)
T PRK07574         62 KFLEERGHELVVTSDK--DGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGI  138 (385)
T ss_pred             HHHHhcCcEEEEeCCC--CCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCc
Confidence            45565 4788775432  357788999999999999863  357999999886 77777777777777777776666665


Q ss_pred             EEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchh
Q psy5259          98 RVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ  177 (294)
Q Consensus        98 ~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~  177 (294)
                      .|+|+                                                  +++++.+||||+++++|++.|++..
T Consensus       139 ~V~n~--------------------------------------------------~g~~a~~VAE~al~l~L~l~R~~~~  168 (385)
T PRK07574        139 TVAEV--------------------------------------------------TGSNSISVAEHVVMMILALVRNYEP  168 (385)
T ss_pred             EEEcC--------------------------------------------------CCCchHHHHHHHHHHHHHHHcCHHH
Confidence            55555                                                  8889999999999999999999999


Q ss_pred             hhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-----------CCCc-ccCHHHH
Q psy5259         178 GHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-----------LGAQ-LVPLDTL  224 (294)
Q Consensus       178 ~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-----------~~~~-~~~l~el  224 (294)
                      +++.+++|.|...... ..+  ++|+||||||||+                     +           .+.+ +.+++|+
T Consensus       169 ~~~~~~~g~W~~~~~~-~~~--~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~el  245 (385)
T PRK07574        169 SHRQAVEGGWNIADCV-SRS--YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSL  245 (385)
T ss_pred             HHHHHHhCCCCccccc-ccc--eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHH
Confidence            9999999999753211 234  7899999999999                     1           1222 3589999


Q ss_pred             hccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCC
Q psy5259         225 CAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL  291 (294)
Q Consensus       225 l~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~  291 (294)
                      +++||+|++|||+|++|+||||++.|             ||++||++||++||++|+|+||+||||++||+|++||||++
T Consensus       246 l~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~  325 (385)
T PRK07574        246 VSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTM  325 (385)
T ss_pred             hhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhC
Confidence            99999999999999999999999888             99999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy5259         292 DNC  294 (294)
Q Consensus       292 ~nv  294 (294)
                      |||
T Consensus       326 pNv  328 (385)
T PRK07574        326 PRN  328 (385)
T ss_pred             CCe
Confidence            996

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-42  Score=320.75  Aligned_cols=232  Identities=19%  Similarity=0.294  Sum_probs=180.5

Q ss_pred             CeEEEecCCCCCCchhHHHhhc--cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcC-CCceEEEec
Q psy5259           4 PKLLLTRNDYPRVSPAYDILED--MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESG-ENLKVISTF   80 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~--~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~-~~lk~i~~~   80 (294)
                      |||++... -+.=.+...++.+  .+++...+.   ..+.| ..+.++++|+++++...+++++++++++ ++||+|++.
T Consensus         2 ~~i~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~   76 (330)
T PRK12480          2 TKIMFFGT-RDYEKEMALNWGKKNNVEVTTSKE---LLSSA-TVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQR   76 (330)
T ss_pred             cEEEEEeC-cHHHHHHHHHHHHhcCeEEEEcCC---CCCHH-HHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence            78888773 2211233333333  345544332   34555 5889999999998766789999999873 377777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|+||++.++++||.|+|+                                                  |++++++|
T Consensus        77 ~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------~~~~~~~v  106 (330)
T PRK12480         77 TAGFDMYDLDLAKKHNIVISNV--------------------------------------------------PSYSPETI  106 (330)
T ss_pred             ccccchhhHHHHHHCCCEEEeC--------------------------------------------------CCCChHHH
Confidence            7777777776666555555555                                                  88999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC-------------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG-------------  215 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~-------------  215 (294)
                      |||+++++|++.|++..+++.+++|.|. |... ..|  ++|+|+++||||+            .++             
T Consensus       107 AE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~--~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~  182 (330)
T PRK12480        107 AEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMS--KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKD  182 (330)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCc--cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHh
Confidence            9999999999999999999999999774 2211 245  8999999999999            111             


Q ss_pred             ---Ccc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         216 ---AQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       216 ---~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                         .++ .++++++++||+|++|+|++++|+++++++.|             ||.+||++||++||++|+|+||+||||+
T Consensus       183 ~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~  262 (330)
T PRK12480        183 LDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE  262 (330)
T ss_pred             hhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence               122 37999999999999999999999999998888             9999999999999999999999999999


Q ss_pred             CCCCC-------------CCCCCcCCCCC
Q psy5259         279 PEPMP-------------ADHPLVQLDNC  294 (294)
Q Consensus       279 ~EP~~-------------~~~~l~~~~nv  294 (294)
                      +||++             ..+|||++|||
T Consensus       263 ~EP~~~~~~~~~~~~~~~~~~~L~~~~nv  291 (330)
T PRK12480        263 NEAAYFTNDWTNKDIDDKTLLELIEHERI  291 (330)
T ss_pred             CCCccccccccccccCchhhHHHhcCCCE
Confidence            99962             12479999996

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=3.6e-42  Score=320.55  Aligned_cols=234  Identities=22%  Similarity=0.340  Sum_probs=186.3

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC--ceEEE
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN--LKVIS   78 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~--lk~i~   78 (294)
                      |+|++++.+.+ .+  .+.++.+.+.++++.....  ....++..+.++++|+++++...++++++|+.+ |+  ||+|+
T Consensus         1 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~lk~I~   74 (332)
T PRK08605          1 MTKIKIMSVRD-ED--APYIKAWAEKHHVEVDLTK--EALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLL-NELGIKQIA   74 (332)
T ss_pred             CcEEEEEecCH-HH--HHHHHHHHHhcCeEEEEec--CCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhh-hhcCceEEE
Confidence            78899999984 66  7888888775555432111  123355678899999998877779999999987 43  66666


Q ss_pred             eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259          79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD  158 (294)
Q Consensus        79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~  158 (294)
                      +.++|+|++|++.++++||.|                                                  +|+|++++.
T Consensus        75 ~~~~G~d~id~~~~~~~gi~v--------------------------------------------------~n~~~~~~~  104 (332)
T PRK08605         75 QRSAGFDTYDLELATKYNLII--------------------------------------------------SNVPSYSPE  104 (332)
T ss_pred             EcccccchhhHHHHHHCCCEE--------------------------------------------------EeCCCCChH
Confidence            666666666666655555555                                                  555889999


Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------cCC----------
Q psy5259         159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------ELG----------  215 (294)
Q Consensus       159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------~~~----------  215 (294)
                      +||||+++++|++.|++..+++.+++|.|. |... ..|  ++|+|++|||||+             .++          
T Consensus       105 ~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~--~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~  180 (332)
T PRK08605        105 SIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILS--RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFP  180 (332)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-ccc--ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            999999999999999999999999999884 3221 345  8999999999999             011          


Q ss_pred             -------Ccc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259         216 -------AQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL  274 (294)
Q Consensus       216 -------~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~L  274 (294)
                             .+. .++++++++||+|++|+|++++|+++++++.|             ||.++|+++|+++|++|+|+||+|
T Consensus       181 ~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaal  260 (332)
T PRK08605        181 NAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAAL  260 (332)
T ss_pred             cHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEE
Confidence                   122 37999999999999999999999999998776             999999999999999999999999


Q ss_pred             eCCCCCC--CCCCC-----------CCcCCCCC
Q psy5259         275 DVMIPEP--MPADH-----------PLVQLDNC  294 (294)
Q Consensus       275 DV~~~EP--~~~~~-----------~l~~~~nv  294 (294)
                      |||++||  +|.++           +||++|||
T Consensus       261 DV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nv  293 (332)
T PRK08605        261 DTYEFERPLFPSDQRGQTINDPLLESLINREDV  293 (332)
T ss_pred             ecccCCCCccccccccccccchhhHHHhcCCCE
Confidence            9999998  45554           49999996

>KOG0069|consensus

Probab=100.00  E-value=4.2e-42  Score=314.76  Aligned_cols=202  Identities=42%  Similarity=0.676  Sum_probs=174.4

Q ss_pred             CCHHHHHHHccCCcEEEeC-CCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHH
Q psy5259          39 MPRDIFIEKLKGCSALLCN-PHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGL  117 (294)
Q Consensus        39 ~~~e~~~~~l~~~d~~~~~-~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~  117 (294)
                      .+++++...+.+....+.. ....++.+++.+.+|++|+|.++++|+||||+++|+++||+|+|+               
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nv---------------  113 (336)
T KOG0069|consen   49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANV---------------  113 (336)
T ss_pred             cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEecc---------------
Confidence            4555666666666555543 556788999988888888888888888888888888777777666               


Q ss_pred             HHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccc
Q psy5259         118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVIS  197 (294)
Q Consensus       118 ~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g  197 (294)
                                                         |+.+..+|||++++++|.+.|++..+++.+++|+| .+......|
T Consensus       114 -----------------------------------p~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g  157 (336)
T KOG0069|consen  114 -----------------------------------PDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLG  157 (336)
T ss_pred             -----------------------------------CCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCcccc
Confidence                                               88888899999999999999999999999999999 444434566


Q ss_pred             cccCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccc
Q psy5259         198 DIIGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLI  245 (294)
Q Consensus       198 ~~~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li  245 (294)
                        ..+.||||||+|+                                +++.+.+++++++++||+|++|||+|++|+|+|
T Consensus       158 --~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~li  235 (336)
T KOG0069|consen  158 --YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLI  235 (336)
T ss_pred             --ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHh
Confidence              8999999999999                                234456699999999999999999999999999


Q ss_pred             ccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         246 GRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       246 ~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      |++.|             ||++||+++|++||++|+|++|+||||++|| +.++||++++||
T Consensus       236 Nk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnv  296 (336)
T KOG0069|consen  236 NKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNV  296 (336)
T ss_pred             hHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccce
Confidence            99999             9999999999999999999999999999999 888999999986

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=1.9e-40  Score=311.51  Aligned_cols=204  Identities=26%  Similarity=0.388  Sum_probs=166.1

Q ss_pred             CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG   83 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G   83 (294)
                      |||++++ ++|   ...+.|++..+++.++.+  ..+.+    .++++|++++++.+++++++++  +|+||+|+++++|
T Consensus         1 mkIl~d~-~~~---~~~~~~~~~~ev~~~~~~--~~~~~----~l~daD~liv~s~t~v~~~ll~--~~~Lk~I~~~~~G   68 (378)
T PRK15438          1 MKILVDE-NMP---YARELFSRLGEVKAVPGR--PIPVA----QLADADALMVRSVTKVNESLLA--GKPIKFVGTATAG   68 (378)
T ss_pred             CEEEEeC-Ccc---hHHHHHhhcCcEEEeCCC--CCCHH----HhCCCcEEEEcCCCCCCHHHhc--CCCCeEEEECccc
Confidence            4799998 576   444666766788877654  34544    5789999999877899999996  4899999999999


Q ss_pred             CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259          84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF  163 (294)
Q Consensus        84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~  163 (294)
                      +||||.+.++++||.|+|+                                                  ||+++.+||||
T Consensus        69 ~D~iD~~~~~~~gI~v~na--------------------------------------------------pg~na~aVAE~   98 (378)
T PRK15438         69 TDHVDEAWLKQAGIGFSAA--------------------------------------------------PGCNAIAVVEY   98 (378)
T ss_pred             ccccCHHHHHHCCCEEEEC--------------------------------------------------CCcCchHHHHH
Confidence            9999998888888777777                                                  66667777777


Q ss_pred             HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-------CC
Q psy5259         164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-------LG  215 (294)
Q Consensus       164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-------~~  215 (294)
                      +++++|++.|+                     .|  .+|.|||+||||+                     +       ..
T Consensus        99 ~~~~lL~l~r~---------------------~g--~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~  155 (378)
T PRK15438         99 VFSSLLMLAER---------------------DG--FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDE  155 (378)
T ss_pred             HHHHHHHHhcc---------------------CC--CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccc
Confidence            77777777664                     12  5677888888888                     1       11


Q ss_pred             CcccCHHHHhccCCEEEEecCCCcc----cccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         216 AQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       216 ~~~~~l~ell~~sDvV~l~~p~t~~----T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                      ..+.+|++++++||+|++|+|+|++    |+||||++.|             ||++||++||+++|++|++.+|+||||+
T Consensus       156 ~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e  235 (378)
T PRK15438        156 GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWE  235 (378)
T ss_pred             cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCC
Confidence            2456899999999999999999996    9999999999             9999999999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCC
Q psy5259         279 PEPMPADHPLVQLDN  293 (294)
Q Consensus       279 ~EP~~~~~~l~~~~n  293 (294)
                      +||.+ +++|+.+++
T Consensus       236 ~EP~~-~~~Ll~~~~  249 (378)
T PRK15438        236 GEPEL-NVELLKKVD  249 (378)
T ss_pred             CCCCC-chhhhhcCC
Confidence            99964 578887654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=4.5e-39  Score=302.98  Aligned_cols=204  Identities=26%  Similarity=0.413  Sum_probs=164.7

Q ss_pred             CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG   83 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G   83 (294)
                      |||++.+ ++|..   .+.|++..++...+.+  ..+.    +.++++|++++++.+++++++|+  +++||+|++.++|
T Consensus         1 mkI~~d~-~~p~~---~~~~~~~~~v~~~~~~--~~~~----~~l~daD~liv~~~t~v~~~ll~--~~~Lk~I~~~~~G   68 (381)
T PRK00257          1 MKIVADE-NIPLL---DAFFAGFGEIRRLPGR--AFDR----AAVRDADVLLVRSVTRVDRALLE--GSRVRFVGTCTIG   68 (381)
T ss_pred             CEEEEec-CchhH---HHHHhhCCcEEEcCCc--ccCH----HHhCCceEEEEeCCCCCCHHHhc--CCCCeEEEECCcc
Confidence            6899999 58744   4555555677766543  2333    36799999998877899999997  3789999999999


Q ss_pred             CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259          84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF  163 (294)
Q Consensus        84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~  163 (294)
                      +||||.++++++||.|+|+                                                  ||+++.+||||
T Consensus        69 ~D~iD~~~~~~~gI~v~na--------------------------------------------------pg~na~aVAE~   98 (381)
T PRK00257         69 TDHLDLDYFAEAGITWSSA--------------------------------------------------PGCNARGVVDY   98 (381)
T ss_pred             ccccCHHHHHHCCCEEEEC--------------------------------------------------CCcChHHHHHH
Confidence            9999888888777777777                                                  66777777777


Q ss_pred             HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-------CC
Q psy5259         164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-------LG  215 (294)
Q Consensus       164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-------~~  215 (294)
                      +++++|++.|+                     .|  +++.||||||||+                     +       ..
T Consensus        99 v~~~lL~l~r~---------------------~g--~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~  155 (381)
T PRK00257         99 VLGSLLTLAER---------------------EG--VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGD  155 (381)
T ss_pred             HHHHHHHHhcc---------------------cC--CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccC
Confidence            77777777653                     12  5778888888888                     1       11


Q ss_pred             CcccCHHHHhccCCEEEEecCCCc----ccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         216 AQLVPLDTLCAQSDFIFVTCALTK----DTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       216 ~~~~~l~ell~~sDvV~l~~p~t~----~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                      ..+.+|++++++||+|++|+|+|+    +|+||||++.|             ||++||++||+++|++|++.+|+||||+
T Consensus       156 ~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e  235 (381)
T PRK00257        156 GDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWE  235 (381)
T ss_pred             ccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCC
Confidence            245689999999999999999999    59999999998             9999999999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCCC
Q psy5259         279 PEPMPADHPLVQLDNC  294 (294)
Q Consensus       279 ~EP~~~~~~l~~~~nv  294 (294)
                      +||. .++||+++ ||
T Consensus       236 ~EP~-~~~~L~~~-nv  249 (381)
T PRK00257        236 GEPQ-IDLELADL-CT  249 (381)
T ss_pred             CCCC-CChhhhhC-CE
Confidence            9995 46889875 53

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=6e-39  Score=296.06  Aligned_cols=221  Identities=19%  Similarity=0.274  Sum_probs=173.3

Q ss_pred             eEEEecCCCCCCchhHHHhhc---cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           5 KLLLTRNDYPRVSPAYDILED---MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         5 kvl~~~~~~~~~~~~~~~l~~---~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      .+++..+... .+...+.|++   ..++..+...           ..+++|+++++.   .+.++++  .|+||+|++.+
T Consensus         2 ~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~-----------~~~~a~~~~~~~---~~~~~l~--~~~Lk~I~~~~   64 (312)
T PRK15469          2 DIIFYHPTFD-TQWWIEALRKALPQARVRAWKSG-----------DNDPADYALVWH---PPVEMLA--GRDLKAVFALG   64 (312)
T ss_pred             EEEEeCCccC-HHHHHHHHHHHCCCCeEEecCCC-----------CCccCeEEEEeC---CChHHhc--cCCceEEEEcc
Confidence            5676664322 1225566655   4455443221           147889988864   2567775  37999999999


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeC-CCchHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAV  160 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~-~~~~~~V  160 (294)
                      +|+|++| +.+++.                                            ..+..+||.|+|.+ +.++.+|
T Consensus        65 aG~d~i~-~~~~~~--------------------------------------------~~~~~~~i~v~~~~~~~~~~~v   99 (312)
T PRK15469         65 AGVDSIL-SKLQAH--------------------------------------------PEMLDPSVPLFRLEDTGMGEQM   99 (312)
T ss_pred             cccchhh-hhhccc--------------------------------------------cccCCCCceEEEecCCcccHHH
Confidence            9999887 333311                                            12345677777766 3689999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCCC------------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELGA------------  216 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~~------------  216 (294)
                      |||+++++|++.|++..+.+.++++.|...     .+  .+++|||+||||+            .++.            
T Consensus       100 AE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~--~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~  172 (312)
T PRK15469        100 QEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PE--YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW  172 (312)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CC--CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence            999999999999999999999999999642     23  6899999999999            1111            


Q ss_pred             -------cccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         217 -------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       217 -------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                             ...+|++++++||+|++|+|+|++|+|+||++.|             ||++|||+||++||++|+|+||+|||
T Consensus       173 ~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDV  252 (312)
T PRK15469        173 PGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDV  252 (312)
T ss_pred             CCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecC
Confidence                   1247999999999999999999999999999888             99999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCCCCC
Q psy5259         277 MIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       277 ~~~EP~~~~~~l~~~~nv  294 (294)
                      |++||+|.++|||++|||
T Consensus       253 f~~EPl~~~~pl~~~~nv  270 (312)
T PRK15469        253 FSREPLPPESPLWQHPRV  270 (312)
T ss_pred             CCCCCCCCCChhhcCCCe
Confidence            999999999999999996

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-37  Score=283.23  Aligned_cols=205  Identities=22%  Similarity=0.356  Sum_probs=158.4

Q ss_pred             eEEEecCCCCCCchhHHHhhc---cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           5 KLLLTRNDYPRVSPAYDILED---MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         5 kvl~~~~~~~~~~~~~~~l~~---~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      ++++..+ ++  +...+.+.+   .++++..+             .+.++|++++...      .+  .+++||+|++.+
T Consensus         2 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~a~~~~~~~~------~~--~~~~Lk~I~~~~   57 (303)
T PRK06436          2 NVYVNFP-MS--KKLLEICRDILDLDDVHWYP-------------DYYDAEAILIKGR------YV--PGKKTKMIQSLS   57 (303)
T ss_pred             eEEEEcc-CC--HHHHHHHHhhcccceeEecc-------------ccCCCCEEEecCC------cC--CCCCeEEEEECC
Confidence            3555553 66  777776544   45555422             2457777755421      11  136677777777


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA  161 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA  161 (294)
                      +|+|++|.+.+++++                                                  +.+++ ++.++.+||
T Consensus        58 aG~D~id~~~~~~~~--------------------------------------------------i~~~~-~g~~~~~VA   86 (303)
T PRK06436         58 AGVDHIDVSGIPENV--------------------------------------------------VLCSN-AGAYSISVA   86 (303)
T ss_pred             cccCcccHHHHHhCC--------------------------------------------------eEEEc-CCCCcHHHH
Confidence            776666666665444                                                  44433 367789999


Q ss_pred             HHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c-----CC
Q psy5259         162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E-----LG  215 (294)
Q Consensus       162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~-----~~  215 (294)
                      ||+++++|++.|++.++.+.+++|.|.+.     .+  ++|+|||+||+|+                     +     .+
T Consensus        87 E~~l~l~L~l~R~i~~~~~~~~~g~w~~~-----~~--~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~  159 (303)
T PRK06436         87 EHAFALLLAWAKNICENNYNMKNGNFKQS-----PT--KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDG  159 (303)
T ss_pred             HHHHHHHHHHHcChHHHHHHHHcCCCCCC-----CC--CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccC
Confidence            99999999999999999999999999742     23  7999999999999                     1     11


Q ss_pred             C--cccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCC
Q psy5259         216 A--QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE  280 (294)
Q Consensus       216 ~--~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~E  280 (294)
                      .  .+.++++++++||+|++|||+|++|+|+||++.|             ||++||++||+++|++|++.||+||||++|
T Consensus       160 ~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~E  239 (303)
T PRK06436        160 ISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNE  239 (303)
T ss_pred             cccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCC
Confidence            1  1468999999999999999999999999999998             999999999999999999999999999999


Q ss_pred             CCCCCCCCcCCCCC
Q psy5259         281 PMPADHPLVQLDNC  294 (294)
Q Consensus       281 P~~~~~~l~~~~nv  294 (294)
                      |+++++   .+|||
T Consensus       240 P~~~~~---~~~nv  250 (303)
T PRK06436        240 PIITET---NPDNV  250 (303)
T ss_pred             CCCccC---CCCCE
Confidence            988765   57875

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.97  E-value=8.3e-33  Score=236.18  Aligned_cols=126  Identities=44%  Similarity=0.695  Sum_probs=109.5

Q ss_pred             HHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------------
Q psy5259         165 IGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------------  212 (294)
Q Consensus       165 l~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------------------  212 (294)
                      ++++|++.|++..+++.++++.|..  .....+  ++++||||||+|+                                
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~--~~~~~~--~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~   76 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWAS--RERFPG--RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD   76 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHH--HTTTTB--S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCC--CcCCCc--cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc
Confidence            5789999999999999999999921  112445  8999999999999                                


Q ss_pred             cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259         213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIP  279 (294)
Q Consensus       213 ~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~  279 (294)
                      ..++++.+++|++++||+|++|||+|++|+||||++.|             ||++|||+||++||++|+|.||+||||++
T Consensus        77 ~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~  156 (178)
T PF02826_consen   77 EFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEP  156 (178)
T ss_dssp             HTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SS
T ss_pred             cccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCC
Confidence            23445679999999999999999999999999999999             99999999999999999999999999999


Q ss_pred             CCCCCCCCCcCCCCC
Q psy5259         280 EPMPADHPLVQLDNC  294 (294)
Q Consensus       280 EP~~~~~~l~~~~nv  294 (294)
                      ||++.++|||++|||
T Consensus       157 EP~~~~~~l~~~~nv  171 (178)
T PF02826_consen  157 EPLPADSPLWDLPNV  171 (178)
T ss_dssp             SSSSTTHHHHTSTTE
T ss_pred             CCCCCCChHHcCCCE
Confidence            999999999999996

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067|consensus

Probab=99.79  E-value=4.2e-19  Score=162.25  Aligned_cols=200  Identities=24%  Similarity=0.374  Sum_probs=165.3

Q ss_pred             hHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcE
Q psy5259          19 AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIR   98 (294)
Q Consensus        19 ~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~   98 (294)
                      .+..+.....+-+|+.   +.|+|.-.+.|.++-+-+.+....++++.++++                            
T Consensus        45 emPilk~~atvafcda---qstqeIhekvLneavgam~yh~i~l~reDlEkf----------------------------   93 (435)
T KOG0067|consen   45 EMPILKDLATVAFCDA---QSTQEIHEKVLNEAVGAMMYHTITLPREDLEKF----------------------------   93 (435)
T ss_pred             cchhhhcchheeeecc---cchHHHHHHHHHHhhhcceeeecccchhhHHHh----------------------------
Confidence            3445566677777776   678887777888877777777778899999865                            


Q ss_pred             EeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhh
Q psy5259          99 VGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG  178 (294)
Q Consensus        99 v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~  178 (294)
                                             +.||++.+.+.|+|++|+.++.+.||.|+|.|+..-+.+|+-++..++.++|+....
T Consensus        94 -----------------------kalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~  150 (435)
T KOG0067|consen   94 -----------------------KALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWL  150 (435)
T ss_pred             -----------------------hhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchh
Confidence                                   777888888888888888888888888888899999999999999999999999999


Q ss_pred             hhhHhcCCCCccccc---cccccccCcCCCEEEEEcc-------------------------------cCCCcc-cCHHH
Q psy5259         179 HNCIASGEWALKQTQ---TVISDIIGLNGSTVGIVGT-------------------------------ELGAQL-VPLDT  223 (294)
Q Consensus       179 ~~~~~~~~w~~~~~~---~~~g~~~~l~gktvgIiG~-------------------------------~~~~~~-~~l~e  223 (294)
                      .+..++|.|......   ...| ....+|.++|++|+                               .++.+. .++++
T Consensus       151 cq~l~eg~~~q~~~q~~e~a~g-~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd  229 (435)
T KOG0067|consen  151 CQALREGTCTQGLEQVREAACG-LARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQD  229 (435)
T ss_pred             hhhhcccceeechhhhhhhhhc-cccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccch
Confidence            999999998643211   0111 36789999999997                               223333 26999


Q ss_pred             HhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEE
Q psy5259         224 LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG  273 (294)
Q Consensus       224 ll~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~  273 (294)
                      ++.+||.+|+||.+++.+.|+||.-.+             ||.+||+++|.+||++|+|.+++
T Consensus       230 ~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa  292 (435)
T KOG0067|consen  230 LLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA  292 (435)
T ss_pred             hhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc
Confidence            999999999999999999999998777             99999999999999999999988

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.75  E-value=6.3e-18  Score=137.44  Aligned_cols=101  Identities=31%  Similarity=0.457  Sum_probs=89.7

Q ss_pred             EEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCc
Q psy5259           6 LLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHD   85 (294)
Q Consensus         6 vl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d   85 (294)
                      ||++++ ++  ++.++.|++++++..++.    .+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++|+|
T Consensus         1 ili~~~-~~--~~~~~~l~~~~~v~~~~~----~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d   72 (133)
T PF00389_consen    1 ILITDP-LP--DEEIERLEEGFEVEFCDS----PSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVD   72 (133)
T ss_dssp             EEESSS--S--HHHHHHHHHTSEEEEESS----SSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCT
T ss_pred             eEEecc-CC--HHHHHHHHCCceEEEeCC----CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccC
Confidence            788984 88  999999999669988763    58889999999999999987767999999998 99999999999999


Q ss_pred             ccChhhHhhCCcEEeecCCCChhhhhhhh
Q psy5259          86 HLHLDQIKSRGIRVGTVGPVSSDAVAEFN  114 (294)
Q Consensus        86 ~id~~~~~~~gI~v~~~~~~~~~~vae~~  114 (294)
                      ++|++.++++||.|+|+||+++++|||++
T Consensus        73 ~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   73 NIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             cccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            99999999999999999999999999997

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.04  E-value=7.5e-10  Score=89.81  Aligned_cols=45  Identities=44%  Similarity=0.570  Sum_probs=41.0

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHH
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN  164 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~a  164 (294)
                      .+++||+|+..++|+|++|+++++++||.|+|+||+++.+||||+
T Consensus        57 ~~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   57 AAPNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             HHTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             ccceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            569999999999999999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.03  E-value=9.7e-10  Score=106.07  Aligned_cols=125  Identities=16%  Similarity=0.189  Sum_probs=96.8

Q ss_pred             eecccccc-ccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEE
Q psy5259         130 FSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVG  208 (294)
Q Consensus       130 ~~~G~d~i-d~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvg  208 (294)
                      .++|+..+ ........||+|+|+++.+..+++|+++++++++.      +..++.+           +  ..+.||++|
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~-----------~--~~LaGKtVg  258 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT-----------D--VMIAGKTVV  258 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc-----------C--CCcCCCEEE
Confidence            35555543 22333457899999999999999999999998877      2223322           2  678999999


Q ss_pred             EEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc------
Q psy5259         209 IVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------  250 (294)
Q Consensus       209 IiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~------  250 (294)
                      |+|+                                ..+++..+++++++.||+|++|.    .|+++|+++.|      
T Consensus       259 VIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpG  334 (476)
T PTZ00075        259 VCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNN  334 (476)
T ss_pred             EECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCC
Confidence            9999                                12344568999999999999984    48899999888      


Q ss_pred             -------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCC
Q psy5259         251 -------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPA  284 (294)
Q Consensus       251 -------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~  284 (294)
                             |+   |++.++++|+++.    ++|+++.||...
T Consensus       335 AiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        335 AIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             cEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence                   44   8999999998754    799999999654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.76  E-value=9.2e-09  Score=94.27  Aligned_cols=87  Identities=26%  Similarity=0.269  Sum_probs=64.3

Q ss_pred             eEEEeeccccccccc-hhhccCcEEE------eeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccc
Q psy5259         126 VISTFSVGHDHLHLD-QIKSRGIRVG------TVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISD  198 (294)
Q Consensus       126 ~i~~~~~G~d~id~~-~~~~~GI~v~------~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~  198 (294)
                      .++...+|+++.+++ .++++||+|+      ++..+++.++||+++++++..                        .+ 
T Consensus        92 ~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~~-  146 (287)
T TIGR02853        92 GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------TD-  146 (287)
T ss_pred             CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------cC-
Confidence            344556666666666 6677777777      777899999999999987733                        12 


Q ss_pred             ccCcCCCEEEEEcc--------------------------------cCCCc---ccCHHHHhccCCEEEEecCCC
Q psy5259         199 IIGLNGSTVGIVGT--------------------------------ELGAQ---LVPLDTLCAQSDFIFVTCALT  238 (294)
Q Consensus       199 ~~~l~gktvgIiG~--------------------------------~~~~~---~~~l~ell~~sDvV~l~~p~t  238 (294)
                       .+++||+++|+|+                                ..+..   +.+++++++++|+|++|+|.+
T Consensus       147 -~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~  220 (287)
T TIGR02853       147 -FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL  220 (287)
T ss_pred             -CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH
Confidence             5789999999999                                11222   235778899999999999964

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.82  E-value=0.00016  Score=66.60  Aligned_cols=57  Identities=32%  Similarity=0.341  Sum_probs=39.8

Q ss_pred             CchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------
Q psy5259         155 VSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------  212 (294)
Q Consensus       155 ~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------  212 (294)
                      .++.++||.++...+..                        .+  .+++|++++|+|+                      
T Consensus       129 ~ns~~~aegav~~a~~~------------------------~~--~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~  182 (296)
T PRK08306        129 LNSIPTAEGAIMMAIEH------------------------TP--ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGA  182 (296)
T ss_pred             hccHhHHHHHHHHHHHh------------------------CC--CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            47888888877654311                        11  4678899999999                      


Q ss_pred             ----------cCCCcc---cCHHHHhccCCEEEEecCC
Q psy5259         213 ----------ELGAQL---VPLDTLCAQSDFIFVTCAL  237 (294)
Q Consensus       213 ----------~~~~~~---~~l~ell~~sDvV~l~~p~  237 (294)
                                +.+.+.   .++.+.++++|+|+.++|.
T Consensus       183 r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~  220 (296)
T PRK08306        183 RKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA  220 (296)
T ss_pred             CCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh
Confidence                      122222   2467889999999999883

>PLN02494 adenosylhomocysteinase

Probab=97.81  E-value=1.5e-05  Score=77.26  Aligned_cols=76  Identities=17%  Similarity=0.276  Sum_probs=64.4

Q ss_pred             cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ..+.||+++|+|+                                ..++...+++++++.+|+|+.    +..|+++|++
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~~  325 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIMV  325 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchHH
Confidence            4479999999999                                123344578999999999997    5578899999


Q ss_pred             ccc-------------c-CcCCCHHHHHHH--HHcCCceEEEeeCCCCC
Q psy5259         248 KQF-------------R-GGLLDQEALVEF--LRDKKIGGAGLDVMIPE  280 (294)
Q Consensus       248 ~~~-------------R-G~lvde~aL~~a--L~~g~i~ga~LDV~~~E  280 (294)
                      +.|             | +..||+++|.++  ++.+.++ +.+|+|+.|
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            888             6 789999999998  9999998 999999985

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.75  E-value=1.3e-05  Score=74.20  Aligned_cols=49  Identities=12%  Similarity=0.192  Sum_probs=40.2

Q ss_pred             cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ..|+||||||||+                                ..+.+..++++++++||+|++|+|. ++|++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~   90 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA   90 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence            6799999999999                                1244556899999999999999996 788888754


Q ss_pred             cc
Q psy5259         248 KQ  249 (294)
Q Consensus       248 ~~  249 (294)
                      +.
T Consensus        91 ei   92 (335)
T PRK13403         91 EV   92 (335)
T ss_pred             HH
Confidence            43

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.39  E-value=0.00016  Score=69.26  Aligned_cols=76  Identities=20%  Similarity=0.292  Sum_probs=61.9

Q ss_pred             cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ..+.|++++|+|+                                ..+....+++++++.+|+|+.+.    .++++|+.
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT----G~~~vI~~  266 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT----GNKDVIRG  266 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence            3579999999999                                12344457899999999997643    46888888


Q ss_pred             ccc-------------cCcC-CCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259         248 KQF-------------RGGL-LDQEALVEFLRDKKIGGAGLDVMIP  279 (294)
Q Consensus       248 ~~~-------------RG~l-vde~aL~~aL~~g~i~ga~LDV~~~  279 (294)
                      +.|             |+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            666             8888 9999999999888888899999884

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.05  E-value=0.002  Score=60.18  Aligned_cols=95  Identities=25%  Similarity=0.343  Sum_probs=59.6

Q ss_pred             HHHHccC-CcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHcc
Q psy5259          44 FIEKLKG-CSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK  122 (294)
Q Consensus        44 ~~~~l~~-~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~  122 (294)
                      ..+.++. +++...........++.+.. ...+.+.+..  .+.++.+.++                          .++
T Consensus        15 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~--~~~i~~~~l~--------------------------~~p   65 (324)
T COG1052          15 VLERLKEKFEVERYEDDLTPDTELAERL-KDADAVITFV--NDRIDAEVLE--------------------------KLP   65 (324)
T ss_pred             HHHHhhccEEEEEeccCCccchHHHHHh-cCCcEEEEcC--CCCcCHHHHH--------------------------hCC
Confidence            4444443 56655543211222333332 5556665554  6666666665                          569


Q ss_pred             CcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHH
Q psy5259         123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV  171 (294)
Q Consensus       123 ~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~  171 (294)
                      +||+|+..++|+|++|+++++++||.|   .. ......+.+.=+.+++
T Consensus        66 ~LKlIa~~~~G~D~vDl~aa~~~gI~V---tn-vp~~~t~sVAe~~~aL  110 (324)
T COG1052          66 GLKLIATRSAGYDNVDLEAAKERGITV---TN-VPGYSTEAVAEHAVAL  110 (324)
T ss_pred             CcEEEEEeccccCcccHHHHHHCCcEE---Ee-CCCCCchHHHHHHHHH
Confidence            999999999999999999999999999   33 2224445555555554

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.92  E-value=0.0025  Score=59.72  Aligned_cols=49  Identities=18%  Similarity=0.274  Sum_probs=37.4

Q ss_pred             Hcc--CcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVK--NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~--~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .++  +||+|++.++|+|++|++.++++||.|   .. .....++-+.=+.+++.
T Consensus        64 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n-~~~~~~~~vAE~~~~l~  114 (330)
T PRK12480         64 KLESYGIKQIAQRTAGFDMYDLDLAKKHNIVI---SN-VPSYSPETIAEYSVSIA  114 (330)
T ss_pred             hhhhcCceEEEecccccchhhHHHHHHCCCEE---Ee-CCCCChHHHHHHHHHHH
Confidence            454  899999999999999999999999999   33 23345565555666554

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.68  E-value=0.0043  Score=57.95  Aligned_cols=49  Identities=24%  Similarity=0.344  Sum_probs=38.8

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|++.++|+|++|++++.++||.|   .. .....++-+.=+.++++
T Consensus        63 ~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V---~n-~~~~~~~~VAE~~~~l~  111 (323)
T PRK15409         63 KMPKLRAASTISVGYDNFDVDALTARKILL---MH-TPTVLTETVADTLMALV  111 (323)
T ss_pred             hCCCCeEEEECceecccccHHHHHHCCCEE---Ee-CCCCCchHHHHHHHHHH
Confidence            669999999999999999999999999999   33 23345666666666554

>PLN03139 formate dehydrogenase; Provisional

Probab=96.24  E-value=0.012  Score=56.35  Aligned_cols=48  Identities=23%  Similarity=0.314  Sum_probs=37.4

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHH
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV  171 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~  171 (294)
                      .+++||+|+..++|+|++|++++.++||.|   ... ...-++-+.=+.+++
T Consensus       118 ~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V---~n~-~g~na~sVAE~al~l  165 (386)
T PLN03139        118 KAKNLELLLTAGIGSDHIDLPAAAAAGLTV---AEV-TGSNVVSVAEDELMR  165 (386)
T ss_pred             hCCCccEEEECCccccccCHHHHHHCCeEE---EEC-CCcCcHHHHHHHHHH
Confidence            579999999999999999999999999999   333 334555555555544

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.16  E-value=0.0055  Score=56.86  Aligned_cols=48  Identities=23%  Similarity=0.311  Sum_probs=38.0

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|+++++++||.|     .|. ...++-+.=+.++++
T Consensus        60 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v-----~n~~g~~~~~VAE~a~~l~  108 (311)
T PRK08410         60 QLPNLKLICITATGTNNVDIEYAKKKGIAV-----KNVAGYSTESVAQHTFAML  108 (311)
T ss_pred             hCCCCeEEEEcccccccccHHHHHhCCCEE-----EcCCCCCChHHHHHHHHHH
Confidence            568999999999999999999999999999     333 345555555555554

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.08  E-value=0.02  Score=53.69  Aligned_cols=49  Identities=24%  Similarity=0.469  Sum_probs=37.4

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|++.+.++||.|   ... ....++-+.=+.+++.
T Consensus        64 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-~g~~~~~vAE~~~~l~  112 (333)
T PRK13243         64 AAPRLRIVANYAVGYDNIDVEEATRRGIYV---TNT-PGVLTEATADFAWALL  112 (333)
T ss_pred             hCCCCeEEEecCccccccCHHHHHHcCCEE---EEC-CCCChHHHHHHHHHHH
Confidence            569999999999999999999999999999   332 2334555555555543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.93  E-value=0.0097  Score=55.34  Aligned_cols=49  Identities=20%  Similarity=0.240  Sum_probs=37.5

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|++.+.++||.|   ... ....++-+.=+.+++.
T Consensus        62 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-~g~~~~~vAE~~i~l~  110 (314)
T PRK06932         62 QLPKLKLIAITATGTNNVDLVAAKELGIAV---KNV-TGYSSTTVPEHVLGMI  110 (314)
T ss_pred             hCcCCeEEEEecccccccCHHHHHhCCCEE---EeC-CCCChhHHHHHHHHHH
Confidence            569999999999999999999999999998   332 2334555555555544

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.92  E-value=0.0086  Score=55.74  Aligned_cols=49  Identities=22%  Similarity=0.254  Sum_probs=37.6

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|++.+.++||.|   .... ...++-+.=+.++++
T Consensus        63 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~~-g~~~~~vAE~~~~~~  111 (317)
T PRK06487         63 AAPQLKLILVAATGTNNVDLAAARERGITV---CNCQ-GYGTPSVAQHTLALL  111 (317)
T ss_pred             hCCCCeEEEEcCccccccCHHHHHHCCCEE---EeCC-CCCcchHHHHHHHHH
Confidence            568999999999999999999999999999   3332 234555555555554

>PRK08605 D-lactate dehydrogenase; Validated

Probab=95.78  E-value=0.021  Score=53.56  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=32.1

Q ss_pred             HccC--cceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHH
Q psy5259         120 AVKN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAV  171 (294)
Q Consensus       120 ~~~~--Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~  171 (294)
                      ++++  ||+|++.++|+|++|++.++++|     +.=.+. ..-++-+.=+.+++
T Consensus        64 ~~~~~~lk~I~~~~~G~d~id~~~~~~~g-----i~v~n~~~~~~~~vAE~~~~~  113 (332)
T PRK08605         64 LLNELGIKQIAQRSAGFDTYDLELATKYN-----LIISNVPSYSPESIAEFTVTQ  113 (332)
T ss_pred             hhhhcCceEEEEcccccchhhHHHHHHCC-----CEEEeCCCCChHHHHHHHHHH
Confidence            4554  99999999999999999998875     111222 33455555555554

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.66  E-value=0.058  Score=52.19  Aligned_cols=98  Identities=9%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             eecccccc-ccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEE
Q psy5259         130 FSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVG  208 (294)
Q Consensus       130 ~~~G~d~i-d~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvg  208 (294)
                      .++|+..+ ......+.+++|.|++..+.++.-|...               ...++.|+....  ..+  ..+.|++++
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~---------------gt~~s~~~ai~r--at~--~~l~Gk~Vl  216 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRY---------------GTGESLLDGIKR--ATN--VLIAGKVVV  216 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccH---------------HHHhhhHHHHHH--hcc--CCCCCCEEE
Confidence            35555443 2233345789999999866655433222               223333431100  112  457899999


Q ss_pred             EEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         209 IVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       209 IiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      |+|+                                ..+.+..+++++++.+|+|+.+.    .+.++|+.+.|
T Consensus       217 ViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~  286 (425)
T PRK05476        217 VAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHM  286 (425)
T ss_pred             EECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHH
Confidence            9999                                12334557899999999998754    45678887666

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.43  E-value=0.037  Score=53.33  Aligned_cols=48  Identities=27%  Similarity=0.376  Sum_probs=37.8

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~~  172 (294)
                      ++++||+|++.++|+|++|+++++++||.|     .+. ...++-+.=+.++++
T Consensus        72 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V-----~n~pg~~~~aVAE~~i~l~  120 (409)
T PRK11790         72 AAEKLVAIGCFCIGTNQVDLDAAAKRGIPV-----FNAPFSNTRSVAELVIGEI  120 (409)
T ss_pred             hCCCCeEEEECceecccccHHHHHhCCCEE-----EeCCCCChHHHHHHHHHHH
Confidence            568999999999999999999999999999     443 334555555555553

>PRK07574 formate dehydrogenase; Provisional

Probab=95.34  E-value=0.051  Score=51.96  Aligned_cols=50  Identities=24%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             HHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       119 l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ..+++||+|+..++|+|++|++++.++||.|   ... ....++-+.=..+++.
T Consensus       110 ~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V---~n~-~g~~a~~VAE~al~l~  159 (385)
T PRK07574        110 AKAPNLKLAITAGIGSDHVDLQAASEHGITV---AEV-TGSNSISVAEHVVMMI  159 (385)
T ss_pred             hhCCCCcEEEECCcccccccHHHHHHCCcEE---EcC-CCCchHHHHHHHHHHH
Confidence            3679999999999999999999999999999   332 2344554444555443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.30  E-value=0.0082  Score=56.10  Aligned_cols=46  Identities=15%  Similarity=0.237  Sum_probs=35.9

Q ss_pred             cCcCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccc
Q psy5259         200 IGLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIG  246 (294)
Q Consensus       200 ~~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~  246 (294)
                      ..++||+|||||+                                 ..+....+.++++++||+|++++|.+.. ..+++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~   91 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE   91 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence            6789999999999                                 1234445889999999999999996654 55543

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=95.23  E-value=0.015  Score=56.38  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=43.3

Q ss_pred             cCcCCCEEEEEcc--------------------------------------cCCCcccCHHHHhccCCEEEEecCCCccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDT  241 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T  241 (294)
                      ..|+||||+|||+                                      +.+....+++|+++.||+|++.+|.+ + 
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~-  109 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q-  109 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H-
Confidence            6799999999999                                      02234457999999999999999988 3 


Q ss_pred             ccccccccccCcCCCHHHHHHHHHcCCceE
Q psy5259         242 EQLIGRKQFRGGLLDQEALVEFLRDKKIGG  271 (294)
Q Consensus       242 ~~li~~~~~RG~lvde~aL~~aL~~g~i~g  271 (294)
                      ++.++           +.+...|+.|...+
T Consensus       110 q~~v~-----------~~i~p~LK~Ga~L~  128 (487)
T PRK05225        110 HSDVV-----------RAVQPLMKQGAALG  128 (487)
T ss_pred             HHHHH-----------HHHHhhCCCCCEEE
Confidence            66654           44455555555443

>PLN02928 oxidoreductase family protein

Probab=95.08  E-value=0.025  Score=53.35  Aligned_cols=50  Identities=26%  Similarity=0.419  Sum_probs=37.0

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH--HHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA--VAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~--VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|++++.++||.|   ....+..  .++-+.-+.+++.
T Consensus        79 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~~~~~~~~~~~vAE~av~l~  130 (347)
T PLN02928         79 RASQMKLIMQFGVGLEGVDVDAATKHGIKV---ARIPSEGTGNAASCAEMAIYLM  130 (347)
T ss_pred             cCCCceEEEECCcccCcCcHHHHHhCCCEE---EECCCCCCcChHHHHHHHHHHH
Confidence            469999999999999999999999999999   3322321  3455555555443

>KOG0069|consensus

Probab=95.06  E-value=0.016  Score=54.07  Aligned_cols=64  Identities=34%  Similarity=0.470  Sum_probs=46.3

Q ss_pred             HHHHHHc-cCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcC
Q psy5259         115 IGLAIAV-KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASG  185 (294)
Q Consensus       115 ~~~~l~~-~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~  185 (294)
                      ..++.+. +++|+|...++|+|++|+++|++|||+|    +....+..+-+.-+.+++   +....+....+
T Consensus        75 ~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V----~nvp~~~~~~vAd~~~~l---il~~~R~~~~g  139 (336)
T KOG0069|consen   75 KELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRV----ANVPDVLTDDVADLAVSL---LLALLRRFSEG  139 (336)
T ss_pred             HhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceE----eccCCcchHHHHHHHHHH---HHHHHhhhhhh
Confidence            3444555 8999999999999999999999999999    555666667666665544   33444443333

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.04  E-value=0.061  Score=53.60  Aligned_cols=48  Identities=35%  Similarity=0.398  Sum_probs=37.9

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~~  172 (294)
                      .+++||||++.++|+|++|++++.++||.|     .|+ ...++-+.=+.+++.
T Consensus        61 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V-----~n~p~~~~~~vAE~~l~l~  109 (526)
T PRK13581         61 AAKNLKVIGRAGVGVDNVDVPAATRRGIIV-----VNAPTGNTISAAEHTIALM  109 (526)
T ss_pred             hCCCCeEEEECCcccccccHHHHHHCCCEE-----EeCCCCChHHHHHHHHHHH
Confidence            569999999999999999999999999999     443 345555555555554

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.97  E-value=0.055  Score=53.89  Aligned_cols=49  Identities=29%  Similarity=0.327  Sum_probs=37.9

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||||++.++|+|++|++++.++||.|   ... ....++-+.=+.++++
T Consensus        59 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V---~n~-pg~~~~~vAE~~~~l~  107 (525)
T TIGR01327        59 AAPKLKVIGRAGVGVDNIDIEAATARGILV---VNA-PTGNTISAAEHALAML  107 (525)
T ss_pred             hCCCceEEEECCcccchhcHHHHHHCCCEE---EeC-CCcChHHHHHHHHHHH
Confidence            569999999999999999999999999999   222 2345555555555554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.95  E-value=0.075  Score=49.68  Aligned_cols=68  Identities=28%  Similarity=0.365  Sum_probs=45.1

Q ss_pred             HhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHH
Q psy5259          92 IKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV  171 (294)
Q Consensus        92 ~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~  171 (294)
                      +++.++.+.....+..+-++        +.++||+|++.++|+|++|+++++++||.|   .. ....-+..+.=+.+++
T Consensus        43 ~~~~d~~~~~~~~v~~~~l~--------~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V---~n-ap~~na~~vAE~~~~~  110 (324)
T COG0111          43 LADADALIVSVTPVTEEVLA--------AAPNLKAIGRAGAGVDNIDLEAATKRGILV---VN-APGGNAISVAELVLAL  110 (324)
T ss_pred             cccCcEEEEecCCCCHHHHh--------hCCCceEEEEccccccccCHHHHhhcCCEE---Ee-CCCcchHHHHHHHHHH
Confidence            34555444444444444444        568999999999999999999999999999   22 2233344444444444

>KOG0067|consensus

Probab=94.00  E-value=0.044  Score=51.49  Aligned_cols=54  Identities=15%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             eEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHc-cCcceEE
Q psy5259          75 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-KNLKVIS  128 (294)
Q Consensus        75 k~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~-~~Lk~i~  128 (294)
                      |++...+-|+|++|+.++.+-||.|||.|+...+.+|+.++.+++.+ +.-.|..
T Consensus        97 Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~c  151 (435)
T KOG0067|consen   97 RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLC  151 (435)
T ss_pred             ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhh
Confidence            56667778999999999999999999999999999999999999876 5555554

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=93.88  E-value=0.04  Score=51.17  Aligned_cols=76  Identities=9%  Similarity=0.138  Sum_probs=52.6

Q ss_pred             HhhCCcEEeecC-CCChhhhhhhhHHHHHHc-cCcceEEEeeccccccccchhhccCcEEEeeC-CCchHHHHHHHHHH
Q psy5259          92 IKSRGIRVGTVG-PVSSDAVAEFNIGLAIAV-KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGL  167 (294)
Q Consensus        92 ~~~~gI~v~~~~-~~~~~~vae~~~~~~l~~-~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~-~~~~~~VAE~al~l  167 (294)
                      +..+||.++|++ +.++.+|||+++++++++ |++...........+-......-+|.+|...+ |..+..+|+...++
T Consensus        80 ~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af  158 (312)
T PRK15469         80 MLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW  158 (312)
T ss_pred             cCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence            457899999986 468999999999999987 88754432211111111122345678888866 77899999988865

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=93.87  E-value=0.049  Score=45.64  Aligned_cols=35  Identities=17%  Similarity=0.434  Sum_probs=26.6

Q ss_pred             cCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecC
Q psy5259         202 LNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCA  236 (294)
Q Consensus       202 l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p  236 (294)
                      |+||+|.||||                                 +.|.+..+..|..+.||+|.+.+|
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~P   69 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLP   69 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCC
Confidence            57899999999                                 456677799999999999999999

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=93.79  E-value=0.12  Score=49.30  Aligned_cols=29  Identities=31%  Similarity=0.551  Sum_probs=27.8

Q ss_pred             ccCcceEEEeeccccccccchhhccCcEE
Q psy5259         121 VKNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus       121 ~~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      .++||+|+..++|+|++|++.+.++||.|
T Consensus        56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v   84 (381)
T PRK00257         56 GSRVRFVGTCTIGTDHLDLDYFAEAGITW   84 (381)
T ss_pred             CCCCeEEEECCccccccCHHHHHHCCCEE
Confidence            47999999999999999999999999999

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.57  E-value=0.08  Score=48.59  Aligned_cols=57  Identities=25%  Similarity=0.202  Sum_probs=49.2

Q ss_pred             CCCHHHHhhcCCCceEEEeccccCcccChh-hHhhCCcEEe------ecCCCChhhhhhhhHHHHHHc
Q psy5259          61 KVDKEALDESGENLKVISTFSVGHDHLHLD-QIKSRGIRVG------TVGPVSSDAVAEFNIGLAIAV  121 (294)
Q Consensus        61 ~~~~~~l~~~~~~lk~i~~~~~G~d~id~~-~~~~~gI~v~------~~~~~~~~~vae~~~~~~l~~  121 (294)
                      ++++++|+.. |   .++...+|+++.+++ .++++||.+.      +++.+|+.++||.++.+++..
T Consensus        81 ~l~~~~l~~~-~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~  144 (287)
T TIGR02853        81 VLTPELLEST-K---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH  144 (287)
T ss_pred             cccHHHHHhc-C---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh
Confidence            4678999876 3   366778899999999 8899999999      999999999999999888754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=93.00  E-value=0.12  Score=49.42  Aligned_cols=30  Identities=33%  Similarity=0.462  Sum_probs=28.3

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEE
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      ..++||+|+..++|+|++|++.+.++||.|
T Consensus        55 ~~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v   84 (378)
T PRK15438         55 AGKPIKFVGTATAGTDHVDEAWLKQAGIGF   84 (378)
T ss_pred             cCCCCeEEEECcccccccCHHHHHHCCCEE
Confidence            358999999999999999999999999999

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=92.35  E-value=0.15  Score=47.50  Aligned_cols=23  Identities=13%  Similarity=0.111  Sum_probs=18.2

Q ss_pred             CcccCHHHHhccCCEEEEecCCC
Q psy5259         216 AQLVPLDTLCAQSDFIFVTCALT  238 (294)
Q Consensus       216 ~~~~~l~ell~~sDvV~l~~p~t  238 (294)
                      ....+..+++++||+|++++|-.
T Consensus        48 v~~~s~~ea~~~ADiVvLaVpp~   70 (314)
T TIGR00465        48 FKVGTVEEAIPQADLIMNLLPDE   70 (314)
T ss_pred             CEECCHHHHHhcCCEEEEeCCcH
Confidence            33456888899999999999933

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=92.35  E-value=4.2  Score=33.02  Aligned_cols=55  Identities=18%  Similarity=0.257  Sum_probs=35.6

Q ss_pred             CCCCeEEEecCCCCCCchhH----HHhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCC
Q psy5259           1 MSKPKLLLTRNDYPRVSPAY----DILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNP   58 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~----~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~   58 (294)
                      |++++||+..+.-....-..    ..|+. +|++++...   ..+.|++.+.+.  ++|++..+.
T Consensus         1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~---~vp~e~i~~~a~~~~~d~V~lS~   62 (137)
T PRK02261          1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV---MTSQEEFIDAAIETDADAILVSS   62 (137)
T ss_pred             CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEEcC
Confidence            88999888764222112111    22333 899998876   478899998774  478887764

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.66  E-value=0.22  Score=45.70  Aligned_cols=52  Identities=19%  Similarity=0.361  Sum_probs=40.3

Q ss_pred             cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCC
Q psy5259         200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLL  255 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lv  255 (294)
                      .++.||++.|+|.             ..++       +..+|.+.+++||+|+.+.|    +.++|+++.+ .|.+|
T Consensus       154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG----~~~~i~~~~ik~gavV  226 (285)
T PRK14189        154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVG----KRNVLTADMVKPGATV  226 (285)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCC----CcCccCHHHcCCCCEE
Confidence            6789999999999             1222       22369999999999999999    5678999888 44443

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=91.28  E-value=0.22  Score=45.76  Aligned_cols=61  Identities=18%  Similarity=0.283  Sum_probs=44.3

Q ss_pred             cCcCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccc
Q psy5259         200 IGLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIG  246 (294)
Q Consensus       200 ~~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~  246 (294)
                      .-|.||||+||||                                 +.|.+..+.+|+.++||+|.+.+|-..+..    
T Consensus        14 ~~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~----   89 (338)
T COG0059          14 DLLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKE----   89 (338)
T ss_pred             hHhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHH----
Confidence            4589999999999                                 345566789999999999999999333211    


Q ss_pred             cccccCcCCCHHHHHHHHHcCCceEE
Q psy5259         247 RKQFRGGLLDQEALVEFLRDKKIGGA  272 (294)
Q Consensus       247 ~~~~RG~lvde~aL~~aL~~g~i~ga  272 (294)
                              |=++.+.--|+.|+..++
T Consensus        90 --------vy~~~I~p~Lk~G~aL~F  107 (338)
T COG0059          90 --------VYEKEIAPNLKEGAALGF  107 (338)
T ss_pred             --------HHHHHhhhhhcCCceEEe
Confidence                    345566666777765443

>PLN02306 hydroxypyruvate reductase

Probab=89.12  E-value=0.29  Score=46.85  Aligned_cols=48  Identities=25%  Similarity=0.358  Sum_probs=36.1

Q ss_pred             Hcc--CcceEEEeeccccccccchhhccCcEEEeeCCCchH-HHHHHHHHHHHHHh
Q psy5259         120 AVK--NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD-AVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~--~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~-~VAE~al~l~l~~~  172 (294)
                      +++  +||+|+..++|+|++|+++++++||+|     .+.. ..++-+.=+.+++.
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V-----~n~pg~~~~~VAE~al~li  131 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAV-----GNTPGVLTETTAELAASLS  131 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEE-----EECCCcCHHHHHHHHHHHH
Confidence            455  479999999999999999999999999     3333 34555555555543

>PRK09189 uroporphyrinogen-III synthase; Validated

Probab=89.04  E-value=0.88  Score=40.22  Aligned_cols=142  Identities=16%  Similarity=0.153  Sum_probs=80.1

Q ss_pred             CeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHcc-CCcEEEeCCCCCCCHHHHhhcC------CCce
Q psy5259           4 PKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLK-GCSALLCNPHQKVDKEALDESG------ENLK   75 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~-~~d~~~~~~~~~~~~~~l~~~~------~~lk   75 (294)
                      |+||+|.| -+......+.|++ +++++.++........+...+.+. .+|.++..+..-+..  +...+      .+++
T Consensus         1 m~VLvTRp-~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~naV~~--~~~~~~~~~~~~~~~   77 (240)
T PRK09189          1 MRVLVTRP-EPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEAVRH--LAALGERLLPHLALP   77 (240)
T ss_pred             CeEEEECC-CCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHHHHH--HHhcchhhHHhcCCe
Confidence            57999997 5533455577777 788888776431222233333444 467776543322221  11110      2233


Q ss_pred             EEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCC
Q psy5259          76 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV  155 (294)
Q Consensus        76 ~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~  155 (294)
                      +++   +|=  --.+.+++.|+..-..+..+++.++++.....  ...-+++...|.+....-.+.++++|+.|....-|
T Consensus        78 ~~a---VG~--~Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~~--~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY  150 (240)
T PRK09189         78 LFA---VGE--ATAEAARELGFRHVIEGGGDGVRLAETVAAAL--APTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECY  150 (240)
T ss_pred             EEE---EcH--HHHHHHHHcCCCCCcCCCCCHHHHHHHHHHhc--CCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEE
Confidence            332   221  12245678888744445567787777643221  35567777777766655567788999887765543

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=88.92  E-value=10  Score=31.12  Aligned_cols=121  Identities=9%  Similarity=0.054  Sum_probs=69.3

Q ss_pred             CCCCeEEEecCCCCCCch----hHHHhhc-cceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeCCCCCCCHHHHhhcCCC
Q psy5259           1 MSKPKLLLTRNDYPRVSP----AYDILED-MFDIITYPISEGRMPRDIFIEKL--KGCSALLCNPHQKVDKEALDESGEN   73 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~----~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~~~~~~~~~~l~~~~~~   73 (294)
                      |.+|+|++.-..+.-.+.    .-..|++ +|||+....   ..|++|+.+..  ++++++.+++...==.++....   
T Consensus        10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~---~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~l---   83 (143)
T COG2185          10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL---FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGL---   83 (143)
T ss_pred             CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC---cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHH---
Confidence            468999987653332222    2244555 799998766   46888888766  6789888764211111111111   


Q ss_pred             ceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccc-cccchhhccCcEEEee
Q psy5259          74 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDH-LHLDQIKSRGIRVGTV  152 (294)
Q Consensus        74 lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~-id~~~~~~~GI~v~~~  152 (294)
                                     .+.|+++|.                           ..|.....|.=. =|....++.|+.=...
T Consensus        84 ---------------ve~lre~G~---------------------------~~i~v~~GGvip~~d~~~l~~~G~~~if~  121 (143)
T COG2185          84 ---------------VEALREAGV---------------------------EDILVVVGGVIPPGDYQELKEMGVDRIFG  121 (143)
T ss_pred             ---------------HHHHHHhCC---------------------------cceEEeecCccCchhHHHHHHhCcceeeC
Confidence                           123344432                           333322222222 2456688889888888


Q ss_pred             CCCchHHHHHHHHHHHH
Q psy5259         153 GPVSSDAVAEFNIGLAI  169 (294)
Q Consensus       153 ~~~~~~~VAE~al~l~l  169 (294)
                      |+.+...+++..+..+-
T Consensus       122 pgt~~~~~~~~v~~~l~  138 (143)
T COG2185         122 PGTPIEEALSDLLTRLG  138 (143)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            88887777777666544

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.76  E-value=0.59  Score=38.25  Aligned_cols=53  Identities=21%  Similarity=0.325  Sum_probs=40.3

Q ss_pred             cCcCCCEEEEEcc-------------cCCCc-------ccCHHHHhccCCEEEEecCCCcccccccccccc-cCcCCC
Q psy5259         200 IGLNGSTVGIVGT-------------ELGAQ-------LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGLLD  256 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~~~-------~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~lvd  256 (294)
                      .++.||++.|+|-             ..+..       ..++++..++||+|+.+.+..    ++|+.+.+ .|.+|+
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~----~~i~~~~ikpGa~Vi   97 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP----EKVPTEWIKPGATVI   97 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC----CccCHHHcCCCCEEE
Confidence            6889999999998             11221       126999999999999999844    67888888 565553

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06436 glycerate dehydrogenase; Provisional

Probab=88.66  E-value=0.26  Score=45.57  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=20.4

Q ss_pred             ccCcceEEEeeccccccccchh
Q psy5259         121 VKNLKVISTFSVGHDHLHLDQI  142 (294)
Q Consensus       121 ~~~Lk~i~~~~~G~d~id~~~~  142 (294)
                      .++||||+..++|+|++|++.+
T Consensus        47 ~~~Lk~I~~~~aG~D~id~~~~   68 (303)
T PRK06436         47 GKKTKMIQSLSAGVDHIDVSGI   68 (303)
T ss_pred             CCCeEEEEECCcccCcccHHHH
Confidence            3799999999999999999987

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.44  E-value=2  Score=41.55  Aligned_cols=47  Identities=15%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ..+.|++++|+|+                                .+++...++++.++.+|+|+.+..    +.++|+.
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~~  273 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIITG  273 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHHH
Confidence            5679999999999                                334555678899999999987643    4456666


Q ss_pred             ccc
Q psy5259         248 KQF  250 (294)
Q Consensus       248 ~~~  250 (294)
                      +.|
T Consensus       274 ~~l  276 (413)
T cd00401         274 EHF  276 (413)
T ss_pred             HHH
Confidence            644

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG0068|consensus

Probab=88.38  E-value=0.4  Score=44.81  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=25.0

Q ss_pred             CcccChhhHhhCCcEEeecCCCChhhhh
Q psy5259          84 HDHLHLDQIKSRGIRVGTVGPVSSDAVA  111 (294)
Q Consensus        84 ~d~id~~~~~~~gI~v~~~~~~~~~~va  111 (294)
                      +|++|+++++++||.|-|+|.+|+.++|
T Consensus        81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saA  108 (406)
T KOG0068|consen   81 VDNVDLKAATENGILVVNTPTANSRSAA  108 (406)
T ss_pred             ccccChhhHHhCCeEEEeCCCCChHHHH
Confidence            0789999999999999999999999997

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=86.75  E-value=0.78  Score=41.69  Aligned_cols=51  Identities=25%  Similarity=0.396  Sum_probs=34.0

Q ss_pred             ccCHHHHhccCCEEEEecCCCcccccccccccc----------cCcCCCHHHHHHHHHcCCce
Q psy5259         218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF----------RGGLLDQEALVEFLRDKKIG  270 (294)
Q Consensus       218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~----------RG~lvde~aL~~aL~~g~i~  270 (294)
                      +.+++++++++|+|++++|....  .-+....+          .|.+.+.++|.++.+++...
T Consensus        58 ~~~~eell~~~D~Vvi~tp~~~h--~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         58 VVPLDQLATHADIVVEAAPASVL--RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             cCCHHHHhcCCCEEEECCCcHHH--HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            45799999999999999995432  11111111          66666777888877775443

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=86.00  E-value=0.99  Score=41.13  Aligned_cols=53  Identities=15%  Similarity=0.240  Sum_probs=36.9

Q ss_pred             ccCHHHHhccCCEEEEecCCCccccccc-ccc-c---c----------cCcCCCHHHHHHHHHcCCce
Q psy5259         218 LVPLDTLCAQSDFIFVTCALTKDTEQLI-GRK-Q---F----------RGGLLDQEALVEFLRDKKIG  270 (294)
Q Consensus       218 ~~~l~ell~~sDvV~l~~p~t~~T~~li-~~~-~---~----------RG~lvde~aL~~aL~~g~i~  270 (294)
                      ..+.++++++||+|++++|.++.++.++ +.+ .   +          +....+.+.+.+.++++.+.
T Consensus        46 ~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        46 AETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             cCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            3478899999999999999887776664 211 1   1          33333456788999886554

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK05752 uroporphyrinogen-III synthase; Validated

Probab=85.96  E-value=1  Score=40.25  Aligned_cols=149  Identities=19%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCC-----CHHHHHHHccCCcEEEeCCCCCCC--HHHHhhcCC
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRM-----PRDIFIEKLKGCSALLCNPHQKVD--KEALDESGE   72 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~-----~~e~~~~~l~~~d~~~~~~~~~~~--~~~l~~~~~   72 (294)
                      |...+||+|.| -+...+..+.|++ +++++.++......     ..+..+..+.++|.++..+..-+.  -+.+...++
T Consensus         1 ~~g~~vlvTRp-~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~   79 (255)
T PRK05752          1 MSGWRLLLTRP-AEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWP   79 (255)
T ss_pred             CCCCEEEECCc-HHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCC
Confidence            67789999996 5533455677777 78887765422100     112344667889988876533332  122332222


Q ss_pred             ---CceEEEeccccCcccChhhHhhCCcEEeec-CCCChhhhhhhhHH-HHHHccCcceEEEeeccccccccchhhccCc
Q psy5259          73 ---NLKVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVSSDAVAEFNIG-LAIAVKNLKVISTFSVGHDHLHLDQIKSRGI  147 (294)
Q Consensus        73 ---~lk~i~~~~~G~d~id~~~~~~~gI~v~~~-~~~~~~~vae~~~~-~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI  147 (294)
                         ++++++   +|=  =-.+.+++.|+.+-.. .+.+++.++++... .......-+++...|.+....-.+.++++|.
T Consensus        80 ~~~~~~~~a---VG~--~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~  154 (255)
T PRK05752         80 QPPQQPWFS---VGA--ATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGA  154 (255)
T ss_pred             CCcCCEEEE---ECH--HHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCC
Confidence               333332   221  1134567889887664 35678877765421 1112345567777777666665677888888


Q ss_pred             EEEeeCCC
Q psy5259         148 RVGTVGPV  155 (294)
Q Consensus       148 ~v~~~~~~  155 (294)
                      .|....-|
T Consensus       155 ~v~~~~vY  162 (255)
T PRK05752        155 SVDYLELY  162 (255)
T ss_pred             EEeEEEEE
Confidence            87766544

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=85.43  E-value=18  Score=29.17  Aligned_cols=118  Identities=11%  Similarity=0.075  Sum_probs=64.0

Q ss_pred             CCeEEEecCCCCCCchhH----HHhhc-cceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeCCCCCCCHHHHhhcCCCce
Q psy5259           3 KPKLLLTRNDYPRVSPAY----DILED-MFDIITYPISEGRMPRDIFIEKL--KGCSALLCNPHQKVDKEALDESGENLK   75 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~----~~l~~-~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~~~~~~~~~~l~~~~~~lk   75 (294)
                      +|||++.....+..+...    ..|+. +|+|+....   ..+.|++.+..  .++|++..++...-..+.+...     
T Consensus         2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~---~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~-----   73 (132)
T TIGR00640         2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPL---FQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPAL-----   73 (132)
T ss_pred             CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCC---CCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHH-----
Confidence            577777554222222222    22333 789987655   46888888776  4688888765433233332221     


Q ss_pred             EEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCC
Q psy5259          76 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV  155 (294)
Q Consensus        76 ~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~  155 (294)
                                   .+.++++|.                        .+.+++.  |...-.-+.+.+++.|+-=+..++.
T Consensus        74 -------------~~~L~~~g~------------------------~~i~viv--GG~~~~~~~~~l~~~Gvd~~~~~gt  114 (132)
T TIGR00640        74 -------------RKELDKLGR------------------------PDILVVV--GGVIPPQDFDELKEMGVAEIFGPGT  114 (132)
T ss_pred             -------------HHHHHhcCC------------------------CCCEEEE--eCCCChHhHHHHHHCCCCEEECCCC
Confidence                         112232221                        1222222  2112233456778888877777888


Q ss_pred             chHHHHHHHHHH
Q psy5259         156 SSDAVAEFNIGL  167 (294)
Q Consensus       156 ~~~~VAE~al~l  167 (294)
                      +...+.++....
T Consensus       115 ~~~~i~~~l~~~  126 (132)
T TIGR00640       115 PIPESAIFLLKK  126 (132)
T ss_pred             CHHHHHHHHHHH
Confidence            888887776653

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=85.24  E-value=2.4  Score=43.45  Aligned_cols=150  Identities=17%  Similarity=0.177  Sum_probs=87.4

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCC-----CHHHHHHHccCCcEEEeCCCCCCCH--HHHhhc-C
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRM-----PRDIFIEKLKGCSALLCNPHQKVDK--EALDES-G   71 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~-----~~e~~~~~l~~~d~~~~~~~~~~~~--~~l~~~-~   71 (294)
                      |..|+||+|.| -+...+..+.|++ +++++.++......     ..+..+..+.++|.++..+..-+..  +.+... +
T Consensus         1 ~~~~~VLVTRp-~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~   79 (656)
T PRK06975          1 ARAFTVVVTRP-DGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWP   79 (656)
T ss_pred             CCCCEEEEeCc-HhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCc
Confidence            67899999997 4433456677777 78888775532111     1123446678899988765433321  112211 1


Q ss_pred             CCceEEEeccccCcccChhhHhhCCcEEeec-------------CCCChhhhhhhhHHHHHHccCcceEEEeeccccccc
Q psy5259          72 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTV-------------GPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLH  138 (294)
Q Consensus        72 ~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~-------------~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id  138 (294)
                      .++++++   +|-  -..+.+++.||.+-..             +.++++.++++.....-....-+++...|.+....-
T Consensus        80 ~~~~i~A---VG~--~Ta~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L  154 (656)
T PRK06975         80 HALPVAV---VGP--GSVAALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWL  154 (656)
T ss_pred             cCCeEEE---ECH--HHHHHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHH
Confidence            2344433   221  1234578888876544             234666666654432200345577777777766665


Q ss_pred             cchhhccCcEEEeeCCCc
Q psy5259         139 LDQIKSRGIRVGTVGPVS  156 (294)
Q Consensus       139 ~~~~~~~GI~v~~~~~~~  156 (294)
                      .+.++++|..|..+.-|.
T Consensus       155 ~~~L~~~Ga~V~~v~vY~  172 (656)
T PRK06975        155 AERLREAGAEVELVEAYR  172 (656)
T ss_pred             HHHHHHCCCEEEEEeEEE
Confidence            678889998888776553

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=85.12  E-value=1.2  Score=38.44  Aligned_cols=13  Identities=38%  Similarity=0.552  Sum_probs=12.2

Q ss_pred             cCcCCCEEEEEcc
Q psy5259         200 IGLNGSTVGIVGT  212 (294)
Q Consensus       200 ~~l~gktvgIiG~  212 (294)
                      .+++||+++|+|+
T Consensus        24 ~~l~gk~v~I~G~   36 (200)
T cd01075          24 DSLEGKTVAVQGL   36 (200)
T ss_pred             CCCCCCEEEEECC
Confidence            6899999999999

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=84.88  E-value=1.4  Score=40.07  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=40.5

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccccc-----cc----------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCC
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRK-----QF----------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP  281 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~-----~~----------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP  281 (294)
                      .++++++++||+|++++|.++.++.++...     .+          +......+++.+.+.+..+...---|+-.+|
T Consensus        50 ~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         50 STAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             CCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            468899999999999999888777665322     11          3333334578888877655433333454444

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=84.81  E-value=0.38  Score=40.03  Aligned_cols=29  Identities=10%  Similarity=0.076  Sum_probs=24.0

Q ss_pred             cCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      .++.|+.++||+|++++|-.++.+..+..
T Consensus        49 ~s~~e~~~~~dvvi~~v~~~~~v~~v~~~   77 (163)
T PF03446_consen   49 DSPAEAAEQADVVILCVPDDDAVEAVLFG   77 (163)
T ss_dssp             SSHHHHHHHBSEEEE-SSSHHHHHHHHHC
T ss_pred             hhhhhHhhcccceEeecccchhhhhhhhh
Confidence            47999999999999999988887776655

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.10  E-value=1.5  Score=40.27  Aligned_cols=51  Identities=14%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             cCcCCCEEEEEcc-------------cCC-------CcccCHHHHhccCCEEEEecCCCcccccccccccc-cCcC
Q psy5259         200 IGLNGSTVGIVGT-------------ELG-------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-RGGL  254 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~-------~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-RG~l  254 (294)
                      .++.||++++||.             ..+       -+..++.+..++||+|+.+++-.    +++..+.+ .|.+
T Consensus       154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~----~~v~~~~ik~Gav  225 (284)
T PRK14179        154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRG----HFVTKEFVKEGAV  225 (284)
T ss_pred             CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCcc----ccCCHHHccCCcE
Confidence            6899999999999             111       12236999999999999999944    34665555 3443

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=84.04  E-value=1.7  Score=36.42  Aligned_cols=47  Identities=26%  Similarity=0.395  Sum_probs=31.4

Q ss_pred             cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      .++.||++.|+|-             ..++       +..++++.+++||+|+.+.+-    .++|.++.+
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~----~~~i~~~~i   98 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGK----PNLIKADWI   98 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSS----TT-B-GGGS
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeecc----ccccccccc
Confidence            6799999999999             1122       224699999999999999973    467777777

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.92  E-value=1.5  Score=40.53  Aligned_cols=47  Identities=19%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      .++.||+++|||.             ..++       +..++.++.++||+|+++++-.    +++.++.+
T Consensus       155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~----~~v~~~~i  221 (301)
T PRK14194        155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRP----RLIDADWL  221 (301)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCCh----hcccHhhc
Confidence            6899999999999             1121       2347999999999999999854    46666656

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=81.57  E-value=1.4  Score=36.92  Aligned_cols=47  Identities=19%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ..+.||++.++||                                ..+++..+++++++++|+++.+.-    .+++|+.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~~   94 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVITG   94 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccCH
Confidence            5689999999999                                346667789999999999887754    3456666


Q ss_pred             ccc
Q psy5259         248 KQF  250 (294)
Q Consensus       248 ~~~  250 (294)
                      +.|
T Consensus        95 e~~   97 (162)
T PF00670_consen   95 EHF   97 (162)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            666

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=80.62  E-value=1.6  Score=36.85  Aligned_cols=47  Identities=26%  Similarity=0.343  Sum_probs=34.8

Q ss_pred             cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      ..+.||++.|+|.             ..++       +..++.+.+++||+|+.+.+..   + +|+++.+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~---~-ii~~~~~  106 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKP---G-LVKGDMV  106 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCC---c-eecHHHc
Confidence            4688999999999             2222       1236888999999999999843   2 6777766

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02712 arogenate dehydrogenase

Probab=80.01  E-value=1.8  Score=44.44  Aligned_cols=47  Identities=23%  Similarity=0.416  Sum_probs=34.5

Q ss_pred             cCcCCCEEEEEcc------------c-------------------CCCc-ccCHHHHhc-cCCEEEEecCCCcccccccc
Q psy5259         200 IGLNGSTVGIVGT------------E-------------------LGAQ-LVPLDTLCA-QSDFIFVTCALTKDTEQLIG  246 (294)
Q Consensus       200 ~~l~gktvgIiG~------------~-------------------~~~~-~~~l~ell~-~sDvV~l~~p~t~~T~~li~  246 (294)
                      .++.+++|||||+            .                   .++. ..+++++++ .+|+|++++| ...+..+++
T Consensus       365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi~  443 (667)
T PLN02712        365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVLK  443 (667)
T ss_pred             CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHHH
Confidence            7889999999999            1                   1111 125777776 5899999999 467777766


Q ss_pred             c
Q psy5259         247 R  247 (294)
Q Consensus       247 ~  247 (294)
                      +
T Consensus       444 ~  444 (667)
T PLN02712        444 S  444 (667)
T ss_pred             H
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		2e-26
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		5e-26
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		1e-18
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		6e-18
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-17
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		3e-16
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		3e-13
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		6e-13
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		5e-12
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-11
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		5e-11
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		6e-11
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		6e-11
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		7e-11
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		7e-11
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		7e-11
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		1e-10
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		1e-10
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		8e-10
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		9e-10
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-09
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		1e-08
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		1e-08
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		1e-08
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		1e-08
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		2e-07
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		2e-07
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		2e-07
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		5e-07
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-06
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-06
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-06
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-06
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		3e-06
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		3e-06
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		3e-06
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		3e-06
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		4e-06
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		5e-06
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		6e-06
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		1e-05
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		1e-05
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		1e-05
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		3e-05
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		5e-05
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		9e-05
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		2e-04
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		6e-04
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		6e-04
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		7e-04

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 120/268 (44%), Gaps = 53/268 (19%)
Query: 50  GCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 109
           G   LLC     VDK  LD +G NLKVIST SVG DHL LD+IK RGIRVG    V +D 
Sbjct: 53  GAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDT 112
Query: 110 VAEFNIGLAI--------AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA 161
            AE  + L +        A++ +K     + G        +   G+   TVG +    + 
Sbjct: 113 TAELAVSLLLTTCRRLPEAIEEVK-----NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIG 167
Query: 162 EFNIGLAIAVSRRFQQG--HNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLV 219
           +       A++RR +       + +G     +                     E  A+ V
Sbjct: 168 Q-------AIARRLKPFGVQRFLYTGRQPRPEE------------------AAEFQAEFV 202
Query: 220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRD 266
               L AQSDFI V C+LT  TE L  +  F             RG +++Q+ L + L  
Sbjct: 203 STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALAS 262
Query: 267 KKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            KI  AGLDV  PEP+P +HPL+ L NC
Sbjct: 263 GKIAAAGLDVTSPEPLPTNHPLLTLKNC 290

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 114/269 (42%), Gaps = 55/269 (20%)
Query: 50  GCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA 109
           G   LLC     VDK  LD +G NLKVIST SVG DHL LD+IK RGIRVG    V +D 
Sbjct: 51  GAHGLLCLLSDHVDKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDT 110
Query: 110 VAEFNIGLAIA-----------VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD 158
            AE  + L +            VKN    S   +      L Q     I +G +G   + 
Sbjct: 111 TAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIAR 170
Query: 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQL 218
            +  F +   +   R+ +                                    E  A+ 
Sbjct: 171 RLKPFGVQRFLYTGRQPRPEE-------------------------------AAEFQAEF 199
Query: 219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLR 265
           V    L AQSDFI V C+LT  TE L  +  F             RG +++Q+ L + L 
Sbjct: 200 VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQALA 259
Query: 266 DKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
             KI  AGLDV  PEP+P +HPL+ L NC
Sbjct: 260 SGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 39/211 (18%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            LKVI+   VG D++ ++  K +GI V      SS +VAE  +GL  +V+R+       +
Sbjct: 66  KLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKM 125
Query: 183 ASGEWALKQTQTV---------------------ISDIIGLNGSTVGIV-----GTELGA 216
             G WA K+   +                     I++ +G+N              E+  
Sbjct: 126 REGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNG 185
Query: 217 QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEF 263
           + V L+TL  +SD + +   L + T  LI  ++              RG ++D  ALV+ 
Sbjct: 186 KFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKA 245
Query: 264 LRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           L++  I GAGLDV   EP+P DHPL + DN 
Sbjct: 246 LKEGWIAGAGLDVFEEEPLPKDHPLTKFDNV 276

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 140/305 (45%), Gaps = 36/305 (11%)
Query: 3   KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           KPK+ +TR + P V      LED F++  +   E  +PR+I ++K+K   AL+    +++
Sbjct: 2   KPKVFITR-EIPEV--GIKXLEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTXLSERI 57
Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
           DKE   E+   L++++ ++VG+D++ +++   RGI V     V +DA A+    L +A  
Sbjct: 58  DKEVF-ENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATA 116
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
              V      G   +   + K RG+       +  D   +              +    I
Sbjct: 117 RHVV-----KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGK------TIGIIGLGRIGQAI 165
Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTE 242
           A      K+ +     I+  + +    V  EL A+  PL+ L  +SDF+ +   LT++T 
Sbjct: 166 A------KRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETY 219
Query: 243 QLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV 289
            LI  ++              RG ++D  ALV+ L++  I GAGLDV   EP   +  L 
Sbjct: 220 HLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEELF 278
Query: 290 QLDNC 294
           +LDN 
Sbjct: 279 KLDNV 283

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 45/215 (20%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           + LKVIS  S G+D++ L++   RGI V  V  + S+AVAEF +GL I + R+       
Sbjct: 63  ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF 122
Query: 182 IASGEW-ALKQTQTVISDIIGLNGSTVGIVG----------------------------- 211
           I  GEW +  +  T    I  L G  VGI+G                             
Sbjct: 123 IRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVN 182
Query: 212 --TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------RGGLLDQ 257
              EL A+ + +D L  +SD + +   LT+DT  +I  ++             RG L+D+
Sbjct: 183 VEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDE 242
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLD 292
           +A+ E ++  K+ G   DV   EP+  +H L + +
Sbjct: 243 KAVTEAIKQGKLKGYATDVFEKEPV-REHELFKYE 276

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 136/338 (40%), Gaps = 102/338 (30%)
Query: 3   KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           KPK+ +TR + P V     +LED F++  +   E  +PR+I ++K+K   AL+    +++
Sbjct: 2   KPKVFITR-EIPEV--GIKMLEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSERI 57
Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
           DKE  + + +                                                  
Sbjct: 58  DKEVFENAPK-------------------------------------------------- 67
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            L++++ ++VG+D++ +++   RGI V     V +DA A+    L +A +R   +G   +
Sbjct: 68  -LRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFV 126
Query: 183 ASGEWALK--------------------------QTQTVISDIIGLNGSTVGI------- 209
            SGEW  +                            Q +     G N   +         
Sbjct: 127 RSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEE 186
Query: 210 VGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
           V  EL A+  PL+ L  +SDF+ +   LT++T  LI  ++              RG ++D
Sbjct: 187 VERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVD 246
Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
             ALV+ L++  I GAGLDV   EP   +  L +LDN 
Sbjct: 247 TNALVKALKEGWIAGAGLDVFEEEPY-YNEELFKLDNV 283

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 38/210 (18%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           K LKVI+ +SVG DH+ L+  + RGIRV     V ++A A+  + L +AV+RR  +G   
Sbjct: 64  KGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAY 123
Query: 182 IASGEWALKQTQTVISDI----------IGLNGSTVGIVGTELGAQLV------------ 219
              G W     + ++             +G  G  V       G ++V            
Sbjct: 124 ARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYP 183
Query: 220 --PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFL 264
              L+ L  ++D + +   LT +T +L+ R++              RG L+D EALVE L
Sbjct: 184 FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL 243
Query: 265 RDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           R   + GAGLDV  PEP+P  HPL  L N 
Sbjct: 244 RG-HLFGAGLDVTDPEPLPPGHPLYALPNA 272

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 119/284 (41%), Gaps = 53/284 (18%)
Query: 37  GRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRG 96
           G +PR   +E +     L+  P     ++ LD+  +  +   T     D L L     R 
Sbjct: 13  GLVPRGSHMEAI---GVLMMCPMSTYLEQELDKRFKLFRYW-TQPAQRDFLALQAESIRA 68
Query: 97  IRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS 156
           +    VG  ++ A AE    L  A+  L+++S+FSVG D + L + + +G+RV     V 
Sbjct: 69  V----VGNSNAGADAE----LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVL 120
Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWAL---KQTQTVISDIIGLNGSTVGIVGTE 213
           +D VA+  IGL +AV RR  +    +  G W     K T       +G+ G  +G +G  
Sbjct: 121 TDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIG--LGRIGLA 178
Query: 214 LGAQLVPLDT-----------------------LCAQSDFIFVTCALTKDTEQLIGRKQF 250
           +  +    D                        L + SD + V C LT +T  +I R+  
Sbjct: 179 VAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVI 238
Query: 251 -------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
                        RG  +D+  LV  L + ++GGAGLDV   EP
Sbjct: 239 DALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP 282

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 126/300 (42%), Gaps = 52/300 (17%)
Query: 3   KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           K K+L+T   +P    A     + +D+I +   + ++  D  IE  K   ALL   ++K 
Sbjct: 1   KKKILIT---WPLPEAAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKC 56
Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI--- 119
            KE +D   EN+K IST+S+G DH+ LD  K+RGI+VG      + A AE  + L +   
Sbjct: 57  RKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSA 116
Query: 120 --AVKNLKVISTFSV-GHDHLHL--DQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 174
             A +  K+I T S  G + L L  +++ ++ + +   G +   A+A+   G  + +   
Sbjct: 117 RRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ-ALAKRAQGFDMDID-- 173
Query: 175 FQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVT 234
           +   H   +S E      Q    D                      LD+L + S F  + 
Sbjct: 174 YFDTHRASSSDE---ASYQATFHD---------------------SLDSLLSVSQFFSLN 209
Query: 235 CALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
              T +T     +                RG L+D E +V  L   ++  AG DV   EP
Sbjct: 210 APSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP 269

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 39/217 (17%)
Query: 117 LAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ 176
           LA     LK +   S G D+L L  +++ G+ V     + +DA++E  +   ++V R + 
Sbjct: 55  LARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYH 114
Query: 177 QGH-NCIASGEWALKQTQTVISD----IIGLN--GSTVGIVGTELGAQLVPLDTLCAQSD 229
               N   + +WAL  T + ++     I G    G ++    + LG  ++ ++T    +D
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPAD 174
Query: 230 -------------------FIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
                              FI     LT  T  L   + F             RG  +D 
Sbjct: 175 HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            AL+  L   ++  A LDV  PEP+P DHPL Q D+ 
Sbjct: 235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV 271

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 104/264 (39%), Gaps = 58/264 (21%)
Query: 74  LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVG 133
           L+V+   ++  + L  +     G+ V +   V++D +         A + L+V+     G
Sbjct: 48  LQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVIN--------AAEKLQVVGRAGTG 99
Query: 134 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQ 193
            D++ L+    +GI V      +S + AE   G+ + ++R+  Q    +  G+W  K+  
Sbjct: 100 VDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFM 159
Query: 194 TVISDIIGLNGSTVGIVG-------------------------------TELGAQLVPLD 222
                   LNG T+GI+G                                  G Q +PL+
Sbjct: 160 GT-----ELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLE 214
Query: 223 TLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKI 269
            +    DFI V   L   T  L+    F             RGG++D+ AL+  L+  + 
Sbjct: 215 EIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQC 274
Query: 270 GGAGLDVMIPEPMPADHPLVQLDN 293
            GA LDV   EP P D  LV  +N
Sbjct: 275 AGAALDVFTEEP-PRDRALVDHEN 297

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 43/211 (20%)
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
            KNLK+  T  +G DH+ L     R + V  V   +S +VAE  + + +++ R +   H 
Sbjct: 111 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 170
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT--------------- 223
               G W +    +   D+  ++  TV  G +G  +  +L P D                
Sbjct: 171 WARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE 230
Query: 224 -------------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
                        +    D + + C L  +TE +I  +               RG L D+
Sbjct: 231 KELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDR 290
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
           +A+   L   ++ G   DV  P+P P DHP 
Sbjct: 291 DAVARALESGRLAGYAGDVWFPQPAPKDHPW 321

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 43/211 (20%)
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
            KNLK+  T  +G DH+ L     R + V  V   +S +VAE  + + +++ R +   H 
Sbjct: 112 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 171
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT--------------- 223
               G W +    +   D+  ++  TV  G +G  +  +L P D                
Sbjct: 172 WARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE 231
Query: 224 -------------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
                        +    D + + C L  +TE +I  +               RG L D+
Sbjct: 232 KELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDR 291
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
           +A+   L   ++ G   DV  P+P P DHP 
Sbjct: 292 DAVARALESGRLAGYAGDVWFPQPAPKDHPW 322

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 43/211 (20%)
Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
            KNLK+  T  +G DH+ L     R + V  V   +S +VAE  + + +++ R +   H 
Sbjct: 112 AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE 171
Query: 181 CIASGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT--------------- 223
               G W +    +   D+  ++  TV  G +G  +  +L P D                
Sbjct: 172 WARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE 231
Query: 224 -------------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
                        +    D + + C L  +TE +I  +               RG L D+
Sbjct: 232 KELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDR 291
Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
           +A+   L   ++ G   DV  P+P P DHP 
Sbjct: 292 DAVARALESGRLAGYAGDVWFPQPAPKDHPW 322

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 49/211 (23%)
Query: 129 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWA 188
           T  +G DH+ L    + G+ V  V   +  +VAE  +   + + R F  G+N +  GEW 
Sbjct: 92  TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 189 LKQTQTVISDIIGLNGSTVGIVGT--------------------------------ELGA 216
           +        D   L G T+G VG                                 E GA
Sbjct: 152 VAGIAYRAYD---LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA 208
Query: 217 QLVP-LDTLCAQSDFIFVTCALTKDT-----EQLIGR--------KQFRGGLLDQEALVE 262
           + V  L+ +  + D I +   LT+ T     ++LIG+           RG +++++A+V+
Sbjct: 209 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 268
Query: 263 FLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
            +    IGG   DV  P+P P DHP   + N
Sbjct: 269 AVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 299

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 49/211 (23%)
Query: 129 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWA 188
           T  +G DH+ L    + G+ V  V   +  +VAE  +   + + R F  G+N +  GEW 
Sbjct: 98  TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 189 LKQTQTVISDIIGLNGSTVGIVGT--------------------------------ELGA 216
           +        D   L G T+G VG                                 E GA
Sbjct: 158 VAGIAYRAYD---LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA 214
Query: 217 QLVP-LDTLCAQSDFIFVTCALTKDT-----EQLIGR--------KQFRGGLLDQEALVE 262
           + V  L+ +  + D I +   LT+ T     ++LIG+           RG +++++A+V+
Sbjct: 215 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 274
Query: 263 FLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
            +    IGG   DV  P+P P DHP   + N
Sbjct: 275 AVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 305

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 43/208 (20%)
Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
           LK+  T  +G DH+ L       I V  V   +S++VAE  + + + + R +   H+   
Sbjct: 114 LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWAR 173
Query: 184 SGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT------------------ 223
           +G W +        D+ G++  TV  G +G  +   L P D                   
Sbjct: 174 NGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKEL 233
Query: 224 ----------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEAL 260
                     +    D + + C L  +TE +I  +               RG L D++A+
Sbjct: 234 NLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAI 293
Query: 261 VEFLRDKKIGGAGLDVMIPEPMPADHPL 288
           V  L   ++ G   DV  P+P P DHP 
Sbjct: 294 VRALESGRLAGYAGDVWFPQPAPNDHPW 321

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 43/208 (20%)
Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
           LK+  T  +G DH+ L       I V  V   +S++VAE  + + + + R +   H+   
Sbjct: 115 LKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWAR 174
Query: 184 SGEWALKQTQTVISDIIGLNGSTV--GIVGTELGAQLVPLDT------------------ 223
           +G W +        D+ G++  TV  G +G  +   L P D                   
Sbjct: 175 NGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKEL 234
Query: 224 ----------LCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEAL 260
                     +    D + + C L  +TE +I  +               RG L D++A+
Sbjct: 235 NLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAI 294
Query: 261 VEFLRDKKIGGAGLDVMIPEPMPADHPL 288
           V  L   ++ G   DV  P+P P DHP 
Sbjct: 295 VRALESGRLAGYAGDVWFPQPAPNDHPW 322

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 46/218 (21%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD--AVAEFNIGLAIAVSRRFQQGH 179
           K LK++    VG DH+ LD I   G ++  +    S+  +VAE  +   + + R F   H
Sbjct: 84  KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAH 143
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGI--VGTELGAQLVP----------------- 220
             I + +W +        DI G   +T+G   +G  +  +LVP                 
Sbjct: 144 EQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD 203
Query: 221 ------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
                       ++ L AQ+D + V   L   T+ LI ++               RG + 
Sbjct: 204 AEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAIC 263
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
             E +   L   ++ G G DV  P+P P DHP   + N
Sbjct: 264 VAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRN 301

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 46/218 (21%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD--AVAEFNIGLAIAVSRRFQQGH 179
           K LK++    VG DH+ LD I   G ++  +    S+  +VAE  +   + + R F   H
Sbjct: 83  KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAH 142
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGI--VGTELGAQLVP----------------- 220
             I + +W +        DI G   +T+G   +G  +  +LVP                 
Sbjct: 143 EQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD 202
Query: 221 ------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
                       ++ L AQ+D + V   L   T+ LI ++               RG + 
Sbjct: 203 AEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAIC 262
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
             E +   L   ++ G G DV  P+P P DHP   + N
Sbjct: 263 VAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRN 300

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 40/198 (20%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
           +L +I+   VG D + L + + R I V T   V +D VA+  I L +AV RR   G   +
Sbjct: 93  SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLV 152
Query: 183 ASGEWA--------------------LKQTQTVISDIIGLNGSTV------GIVGTELGA 216
             G WA                    L Q    ++      G +V       + G +  A
Sbjct: 153 REGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWIA 212
Query: 217 QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEF 263
              P+D L   SD + V  A +  T+ ++                  RG ++D++AL+E 
Sbjct: 213 HQSPVD-LARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271
Query: 264 LRDKKIGGAGLDVMIPEP 281
           L+   I GAGLDV + EP
Sbjct: 272 LKSGTIAGAGLDVFVNEP 289

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 81/214 (37%), Gaps = 47/214 (21%)
Query: 124 LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 183
           LK I+T SVG+DH+     +S GI+V     V SDA AE    L +   RR  +    + 
Sbjct: 95  LKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVR 154
Query: 184 SGEWALKQTQTVISDIIGLNGSTVGIVG------------------------TELGAQLV 219
           SG W       ++    GL G  +GI G                        T L   L 
Sbjct: 155 SGSWPGWGPTQLLG--XGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALE 212
Query: 220 -------PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
                   LD+L   SD   +      + +  +   +              RG L++ +A
Sbjct: 213 EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDA 272
Query: 260 LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           L+E LR K +  AGLDV   EP   D     LDN
Sbjct: 273 LIEALRSKHLFAAGLDVFANEPA-IDPRYRSLDN 305

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 47/203 (23%)
Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            LK+I T SVG DH+ LD  K +GI V  +   S ++VAE      + + +R ++  + +
Sbjct: 64  RLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRV 123
Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------ 212
               ++  Q   +++    LN  T+G++GT                              
Sbjct: 124 KKLNFS--QDSEILAR--ELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDLK 179
Query: 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
           E G     LD L  +SD I +    TK+T   I  ++              RG ++D +A
Sbjct: 180 EKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDA 239
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM 282
           L    +  K  G GLDV   E +
Sbjct: 240 LYRAYQRGKFSGLGLDVFEDEEI 262

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 100/247 (40%), Gaps = 39/247 (15%)
Query: 49  KGCSALLCNPHQKVDKEALDE--SGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS 106
           +GCS++   P   VD+E + +  S   +K I    VG + ++ D  K   + V  V   S
Sbjct: 44  EGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYS 103
Query: 107 SDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIG 166
             A+AE  +  A+ +  L+ I  F    DH H     S  I         S+ +    +G
Sbjct: 104 PRAIAEMTVTQAMYL--LRKIGEFRYRMDHDHDFTWPSNLI---------SNEIYNLTVG 152
Query: 167 LAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCA 226
           L I V      GH   A  E        VI+  +  N         E        DT+  
Sbjct: 153 L-IGV------GHIGSAVAEIFSAMGAKVIAYDVAYNPEF------EPFLTYTDFDTVLK 199
Query: 227 QSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG 273
           ++D + +   L   TE +IG KQ              RG L+D  AL++ L+D +I GAG
Sbjct: 200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAG 259
Query: 274 LDVMIPE 280
           LD +  E
Sbjct: 260 LDTLAGE 266

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           K LK+I+   +G D++  ++ + R I+V      S+D+  E  IGL IA +R+       
Sbjct: 67  KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 182 IASGEWALKQTQTVISDIIGLN-----GSTVGIVGTELG-------------------AQ 217
             SG +   +   +    IG+      G+ VGI+   +G                   A+
Sbjct: 127 AKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAK 186
Query: 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFL 264
            V L+ L   SD I +   ++KD + +I   QF             R   ++ +AL++++
Sbjct: 187 AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYI 246
Query: 265 RDKKIGGAGLDVMIPEP 281
           +  K+     DV   EP
Sbjct: 247 KKGKVYAYATDVFWNEP 263

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 47/191 (24%)
Query: 145 RGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNG 204
           RGI V T G V ++ VAE  +G A+A++R           G           + +I   G
Sbjct: 119 RGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIA--G 176
Query: 205 STVGIVG-------------------------------TELGAQLVPLDTLCAQSDFIFV 233
           S +GIVG                                E G +   L+ +  +SDFIFV
Sbjct: 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFV 236
Query: 234 TCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPE 280
             A+T + ++ +G + F             R  ++D +AL   +    I  A  DV   E
Sbjct: 237 VAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEE 295
Query: 281 PMPADHPLVQL 291
           P+P DHP+  L
Sbjct: 296 PLPLDHPVRSL 306

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 50/216 (23%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A   LK+++   VG D++ +D   +RG+ V      +  + AE  + L +A SR+     
Sbjct: 63  AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 122
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
             +    W  K++    ++I    G TVG+VG                            
Sbjct: 123 ASLREHTW--KRSSFSGTEIF---GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 177
Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
               +LG +L+ LD L A++DFI V    T +T  LI ++               RGGL+
Sbjct: 178 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 237
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL 291
           D+ AL + +    +  AGLDV   EP   D PL +L
Sbjct: 238 DEAALADAITGGHVRAAGLDVFATEPC-TDSPLFEL 272

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 50/216 (23%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A   LK+++   VG D++ +D   +RG+ V      +  + AE  + L +A SR+     
Sbjct: 62  AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 121
Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
             +    W  K++    ++I    G TVG+VG                            
Sbjct: 122 ASLREHTW--KRSSFSGTEIF---GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 176
Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
               +LG +L+ LD L A++DFI V    T +T  LI ++               RGGL+
Sbjct: 177 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 236
Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL 291
           D+ AL + +    +  AGLDV   EP   D PL +L
Sbjct: 237 DEAALADAITGGHVRAAGLDVFATEPC-TDSPLFEL 271

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 47/208 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           K L++I     G D++ +      GI V  V   S +  A+  +   + + RR    H  
Sbjct: 87  KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVGTE-------------------------- 213
           +  G    +++Q + V S    + G T+GI+G E                          
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSD 206
Query: 214 -----LGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
                LG Q V  L  L   SD + + C L +    LI     KQ R          GGL
Sbjct: 207 GIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 266
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPM 282
           +D++AL + L++ +I GA LDV   EP 
Sbjct: 267 VDEKALAQALKEGRIRGAALDVHESEPF 294

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 120/300 (40%), Gaps = 44/300 (14%)
Query: 4   PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
           PKL++T   +  +     +L    ++IT   ++  + R+  + + +   A++     +VD
Sbjct: 3   PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVD 58
Query: 64  KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
            + L    E L+VI     G D+  +D   +RG+ +  V  + +   AE  IGLA+ + +
Sbjct: 59  ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           +L+    F   G       +    G+   TVG +   A     IGLA+A   R Q     
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGA-----IGLAMA--DRLQGWGAT 170
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
           +   E     TQT                   LG + V    L A SDFI +   L  DT
Sbjct: 171 LQYHEAKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 214
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
             L+  +               RG ++D+ A++  L   ++GG   DV   E    AD P
Sbjct: 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRP 274

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 120/300 (40%), Gaps = 44/300 (14%)
Query: 4   PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
           PKL++T   +  +     +L    ++IT   ++  + R+  + + +   A++     +VD
Sbjct: 3   PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVD 58
Query: 64  KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
            + L    E L+VI     G D+  +D   +RG+ +  V  + +   AE  IGLA+ + +
Sbjct: 59  ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           +L+    F   G       +    G+   TVG +   A     IGLA+A   R Q     
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGA-----IGLAMA--DRLQGWGAT 170
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
           +   E     TQT                   LG + V    L A SDFI +   L  DT
Sbjct: 171 LQYHEAKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 214
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
             L+  +               RG ++D+ A++  L   ++GG   DV   E    AD P
Sbjct: 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRP 274

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 47/219 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A + L  I  F++G + + LD    RGI V      ++ +VAE  IG  + + R   + +
Sbjct: 72  AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 131
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
                   N +A+G +  +  +     IIG    G+ +GI+   LG              
Sbjct: 132 AKAHRGVWNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
               Q+  L  L   SD + +       T+ ++G K+              RG ++D  A
Sbjct: 189 GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 248
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNC 294
           L + L  K + GA +DV   EP     P   PL + DN 
Sbjct: 249 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 287

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 47/219 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A + L  I  F++G + + LD    RGI V      ++ +VAE  IG  + + R   + +
Sbjct: 72  AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 131
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
                   N +A+G +  +  +     IIG    G+ +GI+   LG              
Sbjct: 132 AKAHRGVWNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
               Q+  L  L   SD + +       T+ ++G K+              RG ++D  A
Sbjct: 189 GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 248
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNC 294
           L + L  K + GA +DV   EP     P   PL + DN 
Sbjct: 249 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 287

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 47/208 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           K L++I     G D++ +      GI V  V   S +  A+  +   + + RR    H  
Sbjct: 87  KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
           +  G    +++Q + V S    + G T+GI+G                            
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD 206
Query: 212 ---TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
                LG Q V  L  L   SD + + C L +    LI     KQ R          GGL
Sbjct: 207 GIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 266
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPM 282
           +D++AL + L++ +I GA LDV   EP 
Sbjct: 267 VDEKALAQALKEGRIRGAALDVHESEPF 294

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 47/208 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           K L++I     G D++ +      GI V  V   S +  A+  +   + + RR    H  
Sbjct: 87  KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQA 146
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
           +  G    +++Q + V S    + G T+GI+G                            
Sbjct: 147 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD 206
Query: 212 ---TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
                LG Q V  L  L   SD + + C L +    LI     KQ R          GGL
Sbjct: 207 GIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 266
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPM 282
           +D++AL + L++ +I GA LDV   EP 
Sbjct: 267 VDEKALAQALKEGRIRGAALDVHESEPF 294

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 48/215 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           K L+VI     G+D++ +      GI V  +   + +  A+  I   + + RR    +  
Sbjct: 68  KALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQA 127
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
           +  G    +++Q + V S    + G T+G++G                            
Sbjct: 128 LREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQD 187
Query: 212 ---TELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
                LG Q V  L  L  QSD + + C L +    LI     KQ R          GGL
Sbjct: 188 GIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGL 247
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPL 288
           +D++AL + L++ +I GA LDV   EP   A  PL
Sbjct: 248 VDEKALAQALKEGRIRGAALDVHESEPFSFAQGPL 282

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 83/216 (38%), Gaps = 41/216 (18%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A   L  +  FSVG + + L   + RGI V      ++ +VAE  IG  I + RR     
Sbjct: 77  AANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRS 136
Query: 180 NCIASGEW-----ALKQTQTVISDIIGLN--GSTVGIVGTELGAQL-------------- 218
               +G W       ++ +     I+G    GS VG +   LG  +              
Sbjct: 137 VSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNV 196
Query: 219 ---VPLDTLCAQSDFIFVTCALTKDTEQLIG----RKQFRGGLL---------DQEALVE 262
                LD L   SD + +    +K T +LI     RK  +G  L         D EAL +
Sbjct: 197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAK 256
Query: 263 FLRDKKIGGAGLDVMIPEPMPADH----PLVQLDNC 294
            L++  + GA +DV   EP         PL  L+N 
Sbjct: 257 VLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENV 292

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 47/208 (22%)
Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           K L++I     G D++ +      GI V  V   S +  A+  +   + + RR    H  
Sbjct: 84  KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA 143
Query: 182 IASGE--WALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
           +  G    +++Q + V S    + G T+GI+G                            
Sbjct: 144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD 203
Query: 212 ---TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGR---KQFR----------GGL 254
                LG Q V  L  L   SD + + C L +    LI     KQ R          GGL
Sbjct: 204 GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 263
Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPM 282
           +D++AL + L++ +I GA LDV   EP 
Sbjct: 264 VDEKALAQALKEGRIRGAALDVHESEPF 291

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 44/300 (14%)
Query: 4   PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
           PKL++T   +  +     +L    ++IT   ++  + R+  + + +   A++     +VD
Sbjct: 3   PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVD 58
Query: 64  KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
            + L    E L+VI     G D+  +D   +RG+ +  V  + +   AE  IGLA+ + +
Sbjct: 59  ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           +L+    F   G       +    G+   TVG +   A     IGLA+A   R Q     
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGA-----IGLAMA--DRLQGWGAT 170
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
           +         TQT                   LG + V    L A SDFI +   L  DT
Sbjct: 171 LQYHARKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 214
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
             L+  +               RG ++D+ A++  L   ++GG   DV   E    AD P
Sbjct: 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRP 274

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 44/300 (14%)
Query: 4   PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
           PKL++T   +  +     +L    ++IT   ++  + R+  + + +   A++     +VD
Sbjct: 3   PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDRVD 58
Query: 64  KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
            + L    E L+VI     G D+  +D   +RG+ +  V  + +   AE  IGLA+ + +
Sbjct: 59  ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           +L+    F   G       +    G+   TVG +   A     IGLA+A   R Q     
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGA-----IGLAMA--DRLQGWGAT 170
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
           +         TQT                   LG + V    L A SDFI +   L  DT
Sbjct: 171 LQYHARKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 214
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
             L+  +               RG ++D+ A++  L   ++GG   DV   E    AD P
Sbjct: 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRP 274

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 47/219 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A + L  I  F++G + + LD    RGI V      ++ +VAE  IG  + + R   + +
Sbjct: 66  AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 125
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
                   N +A+G +  +  +     IIG    G+ +GI+   LG              
Sbjct: 126 AKAHRGVGNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGXYVYFYDIENKLPL 182
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
               Q+  L  L   SD + +       T+   G K+              RG ++D  A
Sbjct: 183 GNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPA 242
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNC 294
           L + L  K + GA +DV   EP     P   PL + DN 
Sbjct: 243 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 281

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 47/218 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A + L  I  F +G + + LD    RGI V      ++ +VAE  IG  + + R   + +
Sbjct: 71  AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 130
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
                   N +A+G +  +  +     IIG    G+ +GI+   LG              
Sbjct: 131 AKAHRGVWNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 187
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
               Q+  L  L   SD + +       T+ ++G K+              RG ++D  A
Sbjct: 188 GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 247
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDN 293
           L + L  K + GA +DV   EP     P   PL + DN
Sbjct: 248 LCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDN 285

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 199 IIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------- 250
           ++G++ S     G +   QL  L+ + AQ+D I      T++T  L    +F        
Sbjct: 166 VLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAI 225
Query: 251 -----RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPL 288
                RG  +++  L+  LR  K+G A LDV   EP+PAD PL
Sbjct: 226 LFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPL 268

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 116/300 (38%), Gaps = 44/300 (14%)
Query: 4   PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
           PKL++T   +  +     +L    ++IT   ++  + R+  + + +   A       +VD
Sbjct: 4   PKLVITHRVHEEI---LQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAXXAFXPDRVD 59
Query: 64  KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-K 122
            + L    E L+VI     G D+  +D   +RG+ +  V  + +   AE  IGLA+ + +
Sbjct: 60  ADFLQACPE-LRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 118
Query: 123 NLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           +L+    F   G       +    G+   TVG +   A     IGLA A   R Q     
Sbjct: 119 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGA-----IGLAXA--DRLQGWGAT 171
Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
           +         TQT                   LG + V    L A SDFI +   L  DT
Sbjct: 172 LQYHAAKALDTQT----------------EQRLGLRQVACSELFASSDFILLALPLNADT 215
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHP 287
             L+  +               RG ++D+ A++  L   ++GG   DV   E    AD P
Sbjct: 216 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRP 275

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 84/218 (38%), Gaps = 47/218 (21%)
Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A + L  I  F +G + + LD    RGI V      ++ +VAE  IG  + + R   + +
Sbjct: 72  AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEAN 131
Query: 180 --------NCIASGEWALKQTQTVISDIIGLN--GSTVGIVGTELG-------------- 215
                   N +A+G +  +  +     IIG    G+ +GI+   LG              
Sbjct: 132 AKAHRGVWNKLAAGSFEARGKKL---GIIGYGHIGTQLGILAESLGXYVYFYDIENKLPL 188
Query: 216 ---AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
               Q+  L  L   SD + +       T+   G K+              RG ++D  A
Sbjct: 189 GNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPA 248
Query: 260 LVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDN 293
           L + L  K + GA +DV   EP     P   PL + DN
Sbjct: 249 LCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDN 286

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 84/228 (36%), Gaps = 59/228 (25%)
Query: 123 NLKVIS-TFSVGHD---HLHLDQIKSRGIRV--GTVGPVSSDAVAEFNIGLAIAVSRRFQ 176
            LK+IS T  V  D   H+ L+    +G+ V  G   PV   A AE    L +A  RR  
Sbjct: 71  KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPV---APAELTWALVMAAQRRIP 127
Query: 177 QGHNCIASGEW---ALKQTQTVISDIIG--LNGSTVGIVGTELGAQLVP----------- 220
           Q    +  G W    LK T    +  IG  L G T+GI G     QLV            
Sbjct: 128 QYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVL 187
Query: 221 ---------------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF--------- 250
                                 D L  QSD + V   L  +T  +I              
Sbjct: 188 VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALF 247
Query: 251 ----RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
               R  L+++  +V  L   + G A +DV   EP+   H L++++NC
Sbjct: 248 VNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC 295

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 82/218 (37%), Gaps = 40/218 (18%)
Query: 74  LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVG 133
           +K I T + G DH+  +  K  G  +  V   S +A+AE  +  A+ +      +T    
Sbjct: 70  VKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTA 129
Query: 134 HDHLHLDQIK-SRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT 192
             +  +D    S+ +R  TVG V         +G    V+ +   G      GE   +  
Sbjct: 130 KKNFKVDAFMFSKEVRNCTVGVVG--------LGRIGRVAAQIFHGMGATVIGEDVFE-- 179
Query: 193 QTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-- 250
                           I G E     V LD +  +SD I +     K+   ++ R     
Sbjct: 180 ----------------IKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKK 223
Query: 251 -----------RGGLLDQEALVEFLRDKKIGGAGLDVM 277
                      RG L+D EA++E +   K+GG G DV+
Sbjct: 224 MKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVL 261

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 49/233 (21%)
Query: 73  NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSV 132
           +LKV +    G D L LD +  RG+           A ++  + L ++V  L   S    
Sbjct: 80  SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYS---- 135
Query: 133 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ- 191
                       R  R G       D      + L I  S    +GH   A G  A+++ 
Sbjct: 136 -----------ERAARTG-------DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKE 177
Query: 192 ----------TQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
                      + V  D+   +  T   +G E   ++  L+ L  +SD + V+    K T
Sbjct: 178 IARKAVHGLGMKLVYYDVAPADAETEKALGAE---RVDSLEELARRSDCVSVSVPYMKLT 234
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
             LI    F             RG ++ Q+AL+  L+  K+  AGLDV   EP
Sbjct: 235 HHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP 287

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 49/233 (21%)
Query: 73  NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSV 132
           +LKV +    G D L LD +  RG+           A ++  + L ++V  L   S    
Sbjct: 80  SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYS---- 135
Query: 133 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ- 191
                       R  R G       D      + L I  S    +GH   A G  A+++ 
Sbjct: 136 -----------ERAARTG-------DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKE 177
Query: 192 ----------TQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
                      + V  D+   +  T   +G E   ++  L+ L  +SD + V+    K T
Sbjct: 178 IARKAVHGLGMKLVYYDVAPADAETEKALGAE---RVDSLEELARRSDCVSVSVPYMKLT 234
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
             LI    F             RG ++ Q+AL+  L+  K+  AGLDV   EP
Sbjct: 235 HHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP 287

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 49/233 (21%)
Query: 73  NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSV 132
           +LKV +    G D L LD +  RG+           A ++  + L ++V  L   S    
Sbjct: 80  SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYS---- 135
Query: 133 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ- 191
                       R  R G       D      + L I  S    +GH   A G  A+++ 
Sbjct: 136 -----------ERAARTG-------DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKE 177
Query: 192 ----------TQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDT 241
                      + V  D+   +  T   +G E   ++  L+ L  +SD + V+    K T
Sbjct: 178 IARKAVHGLGMKLVYYDVAPADAETEKALGAE---RVDSLEELARRSDCVSVSVPYMKLT 234
Query: 242 EQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 281
             LI    F             RG ++ Q+AL+  L+  K+  AGLDV   EP
Sbjct: 235 HHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP 287

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	4e-67
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	7e-63
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	6e-61
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	9e-60
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	2e-57
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	7e-57
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	1e-50
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	2e-49
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	8e-49
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	2e-48
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	4e-46
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	2e-45
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-44
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	7e-44
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	4e-43
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	5e-42
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-41
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-41
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	7e-39
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	7e-39
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	1e-38
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	5e-38
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-36
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	5e-34
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	9e-34
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	3e-33
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	6e-30
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-28
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	2e-27
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	1e-26
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	7e-26
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	2e-23

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  211 bits (540), Expect = 4e-67
 Identities = 99/342 (28%), Positives = 128/342 (37%), Gaps = 105/342 (30%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDI-ITYPISEGRMPRDIFIEKLKGCSALLCNPH 59
           +   K+ +TR            L    D  +    S+  +P       + G   LLC   
Sbjct: 6   VRLMKVFVTRRIPA---EGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLS 62

Query: 60  QKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI 119
             VDK  LD +G NLKVIST SVG DHL LD+IK RGIR                     
Sbjct: 63  DHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIR--------------------- 101

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
                       VG+                T   V +D  AE  + L +   RR  +  
Sbjct: 102 ------------VGY----------------TPD-VLTDTTAELAVSLLLTTCRRLPEAI 132

Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
             + +G W    T      + G  L  STVGI+G                          
Sbjct: 133 EEVKNGGW----TSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ 188

Query: 212 ------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RG 252
                  E  A+ V    L AQSDFI V C+LT  TE L  +  F             RG
Sbjct: 189 PRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRG 248

Query: 253 GLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            +++Q+ L + L   KI  AGLDV  PEP+P +HPL+ L NC
Sbjct: 249 DVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  200 bits (511), Expect = 7e-63
 Identities = 80/339 (23%), Positives = 136/339 (40%), Gaps = 104/339 (30%)

Query: 3   KPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
           KPK+ +TR     +      +LED F++  +   E  +PR+I ++K+K   AL+    ++
Sbjct: 2   KPKVFITR----EIPEVGIKMLEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSER 56

Query: 62  VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           +DKE  +                                                     
Sbjct: 57  IDKEVFE---------------------------------------------------NA 65

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
             L++++ ++VG+D++ +++   RGI V     V +DA A+    L +A +R   +G   
Sbjct: 66  PKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRF 125

Query: 182 IASGEWALKQTQTVISDIIG--LNGSTVGIVG---------------------------- 211
           + SGEW  +         +G  + G T+GI+G                            
Sbjct: 126 VRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE 185

Query: 212 ---TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLL 255
               EL A+  PL+ L  +SDF+ +   LT++T  LI  ++              RG ++
Sbjct: 186 EVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVV 245

Query: 256 DQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           D  ALV+ L++  I GAGLDV   EP   +  L +LDN 
Sbjct: 246 DTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNV 283

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  195 bits (497), Expect = 6e-61
 Identities = 82/331 (24%), Positives = 128/331 (38%), Gaps = 101/331 (30%)

Query: 5   KLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDK 64
           ++L+TR   P    A D L +    +        +P+   +++++G   L+     ++D 
Sbjct: 2   RVLVTRT-LPG--KALDRLRERGLEVEVH-RGLFLPKAELLKRVEGAVGLIPTVEDRIDA 57

Query: 65  EALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNL 124
           E +D                                                     K L
Sbjct: 58  EVMD---------------------------------------------------RAKGL 66

Query: 125 KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIAS 184
           KVI+ +SVG DH+ L+  + RGIRV     V ++A A+  + L +AV+RR  +G      
Sbjct: 67  KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARD 126

Query: 185 GEWALKQTQTVISDIIG--LNGSTVGIVG--------------------------TELGA 216
           G W           ++G  L G T+G+VG                            L  
Sbjct: 127 GLW----KAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPY 182

Query: 217 QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEF 263
             + L+ L  ++D + +   LT +T +L+ R++              RG L+D EALVE 
Sbjct: 183 PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEA 242

Query: 264 LRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           LR   + GAGLDV  PEP+P  HPL  L N 
Sbjct: 243 LR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  192 bits (490), Expect = 9e-60
 Identities = 74/338 (21%), Positives = 112/338 (33%), Gaps = 103/338 (30%)

Query: 3   KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           K K+L+T    P    A     + +D+I +   + ++  D  IE  K   ALL   ++K 
Sbjct: 1   KKKILITWP-LPE--AAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKC 56

Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
            KE +D   EN+K IST+S+G DH+ LD  K+RG                      I V 
Sbjct: 57  RKEVIDRIPENIKCISTYSIGFDHIDLDACKARG----------------------IKVG 94

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
           N                                 + A AE  + L +  +RR  +G   I
Sbjct: 95  N---------------------------APH-GVTVATAEIAMLLLLGSARRAGEGEKMI 126

Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVG------------------------------- 211
            +  W   +   ++     L+  T+GI G                               
Sbjct: 127 RTRSWPGWEPLELVG--EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSD 184

Query: 212 -TELGA-QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLD 256
                A     LD+L + S F  +    T +T     +                RG L+D
Sbjct: 185 EASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVD 244

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            E +V  L   ++  AG DV   EP   +     L N 
Sbjct: 245 NELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNT 281

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  187 bits (476), Expect = 2e-57
 Identities = 68/340 (20%), Positives = 101/340 (29%), Gaps = 105/340 (30%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
               K  L R   P        L   FD+      +  +       +  G   L     +
Sbjct: 26  HPIQKAFLCRRFTP---AIEAELRQRFDLEVNL-EDTVLTPSGIASRAHGAEVLFVTATE 81

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
            +  E + +    LK I+T SVG+DH+ +   +S G                      I 
Sbjct: 82  AITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLG----------------------IK 119

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
           V +                           T   V SDA AE  + L +   RR  +   
Sbjct: 120 VLH---------------------------TPD-VLSDACAEIAMLLVLNACRRGYEADR 151

Query: 181 CIASGEWALKQTQTVISDIIG--LNGSTVGIVG--------------------------- 211
            + SG W         + ++G  L G  +GI G                           
Sbjct: 152 MVRSGSW----PGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRL 207

Query: 212 ----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGL 254
                E       LD+L   SD   +      + +  +   +              RG L
Sbjct: 208 SHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDL 267

Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           ++ +AL+E LR K +  AGLDV   EP   D     LDN 
Sbjct: 268 INDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNI 306

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  185 bits (471), Expect = 7e-57
 Identities = 66/347 (19%), Positives = 112/347 (32%), Gaps = 116/347 (33%)

Query: 3   KPKLLLTRNDYPRVSPA-YDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
            PKL++T     RV      +L    ++IT   ++  + R+  + + +   A++     +
Sbjct: 2   LPKLVITH----RVHEEILQLLAPHCELITNQ-TDSTLTREEILRRCRDAQAMMAFMPDR 56

Query: 62  VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           VD + L                                                    A 
Sbjct: 57  VDADFLQ---------------------------------------------------AC 65

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
             L+VI     G D+  +D   +RG+ +  V  + +   AE  IGLA+ + R  +     
Sbjct: 66  PELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF 125

Query: 182 IASGEWALKQTQTVISDIIG--LNGSTVGIVG---------------------------- 211
           + SG++     +       G  L+ +TVG +G                            
Sbjct: 126 VRSGKF-----RGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180

Query: 212 ----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGL 254
                 LG + V    L A SDFI +   L  DT  L+  +               RG +
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240

Query: 255 LDQEALVEFLRDKKIGGAGLDVMIPE-------PMPADHPLVQLDNC 294
           +D+ A++  L   ++GG   DV   E       P   D  L+   N 
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNT 287

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  169 bits (430), Expect = 1e-50
 Identities = 69/336 (20%), Positives = 115/336 (34%), Gaps = 104/336 (30%)

Query: 3   KPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
           +PK+ +      ++   A + L+   D+            +     +     ++ +P  K
Sbjct: 2   RPKVGVLL----KMKREALEELKKYADVEIIL----YPSGEELKGVIGRFDGIIVSPTTK 53

Query: 62  VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           + +E L+                                                     
Sbjct: 54  ITREVLE---------------------------------------------------NA 62

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
           + LKVIS  S G+D++ L++   RGI V  V  + S+AVAEF +GL I + R+       
Sbjct: 63  ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF 122

Query: 182 IASGEWALKQ-TQTVISDIIGLNGSTVGIVG----------------------------- 211
           I  GEW       T    I  L G  VGI+G                             
Sbjct: 123 IRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVN 182

Query: 212 --TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------RGGLLDQ 257
              EL A+ + +D L  +SD + +   LT+DT  +I  ++             RG L+D+
Sbjct: 183 VEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDE 242

Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           +A+ E ++  K+ G   DV   EP+           
Sbjct: 243 KAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWE 278

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  166 bits (422), Expect = 2e-49
 Identities = 64/343 (18%), Positives = 109/343 (31%), Gaps = 93/343 (27%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
           M +P++LL  +    +   +   +  F++I           D F + L+          +
Sbjct: 1   MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPAN----LTTHDGFKQALR--------EKR 48

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
             D EA+                        IK          P ++D        ++  
Sbjct: 49  YGDFEAI------------------------IKLAVENGTESYPWNADL-------ISHL 77

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
             +LKV +    G D L LD +  RG+           A ++  + L ++V R       
Sbjct: 78  PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSER 137

Query: 181 CIASGEWALKQTQTVISDIIG--LNGSTVGIVG--------------------------- 211
              +G+        +          G  +G VG                           
Sbjct: 138 AARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP 197

Query: 212 ------TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------R 251
                   LGA+ V  L+ L  +SD + V+    K T  LI    F             R
Sbjct: 198 ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257

Query: 252 GGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           G ++ Q+AL+  L+  K+  AGLDV   EP      L+++ + 
Sbjct: 258 GPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV 299

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  164 bits (417), Expect = 8e-49
 Identities = 70/335 (20%), Positives = 112/335 (33%), Gaps = 102/335 (30%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
           M    +L+       +      L+  F +  Y        RD    + +   A++ N + 
Sbjct: 21  MEAIGVLMMCPMSTYLE---QELDKRFKLFRYW--TQPAQRDFLALQAESIRAVVGNSNA 75

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
             D E +D                                                   A
Sbjct: 76  GADAELID---------------------------------------------------A 84

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
           +  L+++S+FSVG D + L + + +G+RV     V +D VA+  IGL +AV RR  +   
Sbjct: 85  LPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDK 144

Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------TE 213
            +  G W       + +     +G  VGI+G                             
Sbjct: 145 YVRRGAWK-FGDFKLTTKF---SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200

Query: 214 LGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
                   +  L + SD + V C LT +T  +I R+               RG  +D+  
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260

Query: 260 LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           LV  L + ++GGAGLDV   EP      L  L+N 
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENV 294

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  162 bits (413), Expect = 2e-48
 Identities = 38/216 (17%), Positives = 67/216 (31%), Gaps = 48/216 (22%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
            +  LK I   + G DHL  + I    + V      ++DAVAEF + L +A  +R  Q  
Sbjct: 47  KMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYG 105

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------- 212
             +  G++          +I  + G  V ++G                            
Sbjct: 106 EKMKRGDYGRD------VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE 159

Query: 213 ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
                   L+    ++        L K T  L+  +               R  +LD++ 
Sbjct: 160 GPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDG 219

Query: 260 LVEFLRDKKIGGAGLDVMI-PEPMPADHPLVQLDNC 294
           ++  L+++       DV         D     L N 
Sbjct: 220 VLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 255

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  157 bits (399), Expect = 4e-46
 Identities = 63/335 (18%), Positives = 100/335 (29%), Gaps = 102/335 (30%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
             KP LLL     P V    D L+  + +           R      L    A+      
Sbjct: 28  NVKPDLLLVEPMMPFVM---DELQRNYSVHRLY---QAADRPALEAALPSIRAVATGGGA 81

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
            +  E ++                                                    
Sbjct: 82  GLSNEWME---------------------------------------------------K 90

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
           + +L +I+   VG D + L + + R I V T   V +D VA+  I L +AV RR   G  
Sbjct: 91  LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDR 150

Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------TE 213
            +  G WA  +   +        G  +G++G                           + 
Sbjct: 151 LVREGRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG 207

Query: 214 LGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEA 259
           +          L   SD + V  A +  T+ ++                  RG ++D++A
Sbjct: 208 VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDA 267

Query: 260 LVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           L+E L+   I GAGLDV + EP           N 
Sbjct: 268 LIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNT 301

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  157 bits (398), Expect = 2e-45
 Identities = 48/220 (21%), Positives = 76/220 (34%), Gaps = 49/220 (22%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
             KNLK+  T  +G DH+ L     R + V  V   +S +VAE  + + +++ R +   H
Sbjct: 110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSH 169

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
                G W +    +   D   L    VG V                             
Sbjct: 170 EWARKGGWNIADCVSHAYD---LEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP 226

Query: 212 ----TELGAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                EL        + +    D + + C L  +TE +I  +               RG 
Sbjct: 227 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 286

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           L D++A+   L   ++ G   DV  P+P P DHP   +  
Sbjct: 287 LCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 326

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  153 bits (388), Expect = 2e-44
 Identities = 65/342 (19%), Positives = 100/342 (29%), Gaps = 104/342 (30%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
              P + L        +    IL+D+  +        +  ++I  + L      L     
Sbjct: 19  SHMPLVALLDGRDC--TVEMPILKDVATVAFCD---AQSTQEIHEKVLNEAVGALMYHTI 73

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
            + +E L E  + L++I     G D                            NI +  A
Sbjct: 74  TLTREDL-EKFKALRIIVRIGSGFD----------------------------NIDIKSA 104

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
                                    GI V  V   S +  A+  +   + + RR    H 
Sbjct: 105 ----------------------GDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQ 142

Query: 181 CIASGEWALKQTQTVISDIIG--LNGSTVGIVG--------------------------- 211
            +  G       Q          + G T+GI+G                           
Sbjct: 143 ALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS 202

Query: 212 ----TELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                 LG Q V  L  L   SD + + C L +    LI                  RGG
Sbjct: 203 DGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG 262

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPLVQLDNC 294
           L+D++AL + L++ +I GA LDV   EP   +  PL    N 
Sbjct: 263 LVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 304

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  151 bits (383), Expect = 7e-44
 Identities = 54/276 (19%), Positives = 88/276 (31%), Gaps = 63/276 (22%)

Query: 75  KVISTFSVGHDHLHLDQIKSRG--IRVGTVGPVSSDAVAEFNI----------GLAIAVK 122
            V+   +   + L   Q+++            V++    +  +           LA    
Sbjct: 3   LVLMAQATKPEQL--QQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPLLKTILARPTN 60

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            LK +   S G D+L L  +++ G+ V     + +DA++E  +   ++V R +       
Sbjct: 61  QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120

Query: 183 ASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------ 212
                      T       L G  + I GT                              
Sbjct: 121 RGARQWALPMTTS-----TLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH 175

Query: 213 -ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
                         A ++FI     LT  T  L   + F             RG  +D  
Sbjct: 176 FHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTT 235

Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
           AL+  L   ++  A LDV  PEP+P DHPL Q D+ 
Sbjct: 236 ALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV 271

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  148 bits (375), Expect = 4e-43
 Identities = 38/216 (17%), Positives = 69/216 (31%), Gaps = 52/216 (24%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
             K  K+I   S G DH+ ++ I    +         S +VAE    L +A ++   + +
Sbjct: 46  LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENN 104

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------- 212
             + +G +    T         L G  +GI+G                            
Sbjct: 105 ELMKAGIFRQSPT-------TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVD 157

Query: 213 -ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
             +         L  QSDF+ +   LT  T  ++  +               R  ++ + 
Sbjct: 158 QNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKP 217

Query: 259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
            ++ FL+++       DV   EP   +     L N 
Sbjct: 218 DMIGFLKERSDVWYLSDVWWNEPEITETN---LRNA 250

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  144 bits (367), Expect = 1e-41
 Identities = 83/341 (24%), Positives = 126/341 (36%), Gaps = 114/341 (33%)

Query: 1   MSKPKLLLTRNDYPRVSP-AYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNP 58
           M + K+L+       +   A  +L+D   ++I           D  +E +K   A++   
Sbjct: 1   MKRMKVLVAA----PLHEKAIQVLKDAGLEVIYEEY----PDEDRLVELVKDVEAIIVRS 52

Query: 59  HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLA 118
             KV +  + ES   LKVI+   VG D                            NI + 
Sbjct: 53  KPKVTRRVI-ESAPKLKVIARAGVGLD----------------------------NIDVE 83

Query: 119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 178
            A                      K +GI V      SS +VAE  +GL  +V+R+    
Sbjct: 84  AA----------------------KEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFA 121

Query: 179 HNCIASGEWALKQTQTVISDIIG--LNGSTVGIVG------------------------- 211
              +  G WA K+        +G  L G T+GI+G                         
Sbjct: 122 DRKMREGVWAKKE-------AMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPY 174

Query: 212 ------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RG 252
                  E+  + V L+TL  +SD + +   L + T  LI  ++              RG
Sbjct: 175 PNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234

Query: 253 GLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
            ++D  ALV+ L++  I GAGLDV   EP+P DHPL + DN
Sbjct: 235 PVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDN 275

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  145 bits (369), Expect = 1e-41
 Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 49/220 (22%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
             KNLK++ T  +G DH+ L    + G+ V  V   +  +VAE  +   + + R F  G+
Sbjct: 83  KAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGY 142

Query: 180 NCIASGEWALKQTQTVISDIIGLNGSTVGIVG---------------------------- 211
           N +  GEW +        D   L G T+G VG                            
Sbjct: 143 NQVVKGEWNVAGIAYRAYD---LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA 199

Query: 212 ----TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                E GA+ V  L+ +  + D I +   LT+ T  +  ++               RG 
Sbjct: 200 PELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA 259

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           +++++A+V+ +    IGG   DV  P+P P DHP   + N
Sbjct: 260 IMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 299

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  138 bits (350), Expect = 7e-39
 Identities = 50/229 (21%), Positives = 76/229 (33%), Gaps = 55/229 (24%)

Query: 120 AVKNLKVISTFSV----GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 175
            +  LK+IS           H+ L+    +G+ V   G  S  A AE    L +A  RR 
Sbjct: 68  RLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVV-LEGKGSPVAPAELTWALVMAAQRRI 126

Query: 176 QQGHNCIASGEWALKQTQTVISDI-----IGLNGSTVGIVG------------------- 211
            Q    +  G W     ++            L G T+GI G                   
Sbjct: 127 PQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNV 186

Query: 212 ------------TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------- 250
                          G  +    D L  QSD + V   L  +T  +I             
Sbjct: 187 LVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTAL 246

Query: 251 -----RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
                R  L+++  +V  L   + G A +DV   EP+   H L++++NC
Sbjct: 247 FVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC 295

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  138 bits (351), Expect = 7e-39
 Identities = 64/343 (18%), Positives = 113/343 (32%), Gaps = 107/343 (31%)

Query: 1   MSKPKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPH 59
             + KL     +   ++   + L+D   ++IT    EG     +  + +     ++  P 
Sbjct: 15  ADEEKLYGCTENKLGIA---NWLKDQGHELITTSDKEG--GNSVLDQHIPDADIIITTPF 69

Query: 60  Q--KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGL 117
               + KE + +  + LK++    VG DH+ LD I   G +                   
Sbjct: 70  HPAYITKERI-DKAKKLKLVVVAGVGSDHIDLDYINQTGKK------------------- 109

Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
            I+V       T S                        +  +VAE  +   + + R F  
Sbjct: 110 -ISVLE----VTGS------------------------NVVSVAEHVVMTMLVLVRNFVP 140

Query: 178 GHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG-------------------------- 211
            H  I + +W +        D   + G T+  +G                          
Sbjct: 141 AHEQIINHDWEVAAIAKDAYD---IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 197

Query: 212 -------TELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------- 250
                   ++GA+ V  ++ L AQ+D + V   L   T+ LI ++               
Sbjct: 198 ALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 257

Query: 251 RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           RG +   E +   L   ++ G G DV  P+P P DHP   + N
Sbjct: 258 RGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRN 300

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  137 bits (347), Expect = 1e-38
 Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 65/234 (27%)

Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
           A+A   +  +S  +VG D++ + + K  G ++  V   S +A+AE     A  + R+ + 
Sbjct: 65  ALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKA 124

Query: 178 GHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVGT----------------------- 212
               +A  +             IG  +    VG+VGT                       
Sbjct: 125 MDEKVARHDLRWA-------PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI 177

Query: 213 -------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RG 252
                  + G  +  LD L  Q+D I +          +I  +               RG
Sbjct: 178 FRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237

Query: 253 GLLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PADHPLVQLDN 293
            L+D +A++  L   KI G  +DV   E                    L+   N
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPN 291

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  136 bits (344), Expect = 5e-38
 Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 63/233 (27%)

Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
            +    +K ++  +VG D++ +  +K  GIR+  V   S  A+AEF +   + + R   +
Sbjct: 63  KMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGK 122

Query: 178 GHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVGT----------------------- 212
               + +G++            IG  L   TVG++GT                       
Sbjct: 123 VQAQLQAGDYEKA------GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP 176

Query: 213 ------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                       V L+ L  QSD I +     +    +I    F             R  
Sbjct: 177 YPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPN 236

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEP-------------MPADHPLVQLDN 293
           L+D +A++  L+  K+ G G+D    E               P    L+ + N
Sbjct: 237 LIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPN 289

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  131 bits (332), Expect = 2e-36
 Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 52/217 (23%)

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 182
            +K I T + G DH+  +  K  G  +  V   S +A+AE  +  A+ + R      +  
Sbjct: 69  GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRT 128

Query: 183 ASGEWALKQTQTVISDIIG--LNGSTVGIVGT---------------------------- 212
           A   + +       + +    +   TVG+VG                             
Sbjct: 129 AKKNFKVD------AFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG 182

Query: 213 -ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
            E     V LD +  +SD I +     K+   ++ R                RG L+D E
Sbjct: 183 IEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTE 242

Query: 259 ALVEFLRDKKIGGAGLDVMIPEP--MPADHPLVQLDN 293
           A++E +   K+GG G DV+  E      D    +L+N
Sbjct: 243 AVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLEN 279

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  125 bits (316), Expect = 5e-34
 Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 54/220 (24%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A + L+V+     G D++ L+    +GI V      +S + AE   G+ + ++R+  Q  
Sbjct: 86  AAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAT 145

Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
             +  G+W  K+        +G  LNG T+GI+G                          
Sbjct: 146 ASMKDGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198

Query: 212 -----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                   G Q +PL+ +    DFI V   L   T  L+    F             RGG
Sbjct: 199 SPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGG 258

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           ++D+ AL+  L+  +  GA LDV   EP P D  LV  +N
Sbjct: 259 IVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEN 297

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  127 bits (322), Expect = 9e-34
 Identities = 72/340 (21%), Positives = 112/340 (32%), Gaps = 114/340 (33%)

Query: 1   MSKPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPH 59
           +S P +L+      +++P     L D  ++           RD  +  +    ALL    
Sbjct: 2   VSLPVVLIAD----KLAPSTVAALGDQVEVRWVD----GPDRDKLLAAVPEADALLVRSA 53

Query: 60  QKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAI 119
             VD E L                                                    
Sbjct: 54  TTVDAEVLA--------------------------------------------------- 62

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
           A   LK+++   VG D++ +D   +RG+ V      +  + AE  + L +A SR+     
Sbjct: 63  AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 122

Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
             +    W             G  + G TVG+VG                          
Sbjct: 123 ASLREHTWKRSS-------FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 175

Query: 212 -----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                 +LG +L+ LD L A++DFI V    T +T  LI ++               RGG
Sbjct: 176 SPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGG 235

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           L+D+ AL + +    +  AGLDV   EP   D PL +L  
Sbjct: 236 LVDEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQ 274

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  122 bits (309), Expect = 3e-33
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 57/222 (25%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
             K LK+I+   +G D++  ++ + R I+V      S+D+  E  IGL IA +R+     
Sbjct: 65  KGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSM 124

Query: 180 NCIASGEWALKQTQTVISDIIG--LNGSTVGIVG-------------------------- 211
               SG +           I G  L G T+GIVG                          
Sbjct: 125 ALAKSGIF---------KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175

Query: 212 -----TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGG 253
                 ++ A+ V L+ L   SD I +   ++KD + +I   QF             R  
Sbjct: 176 IREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAV 235

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADH--PLVQLDN 293
            ++ +AL+++++  K+     DV   EP   +    L++ + 
Sbjct: 236 AVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHER 277

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  114 bits (287), Expect = 6e-30
 Identities = 48/217 (22%), Positives = 75/217 (34%), Gaps = 52/217 (23%)

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
             L    +   G D L LD    R  ++  V  +    ++E+  G  +++ R+       
Sbjct: 66  NKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQ 124

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVGT-ELGAQLVP-------------------- 220
                W     Q        L G T+ I+GT  +G  +                      
Sbjct: 125 QKQRLWQSHPYQG-------LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERA 177

Query: 221 ----------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQ 257
                     L+ + AQ+D I      T++T  L    +F             RG  +++
Sbjct: 178 GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE 237

Query: 258 EALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
             L+  LR  K+G A LDV   EP+PAD PL    N 
Sbjct: 238 GDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNL 274

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  111 bits (280), Expect = 2e-28
 Identities = 62/339 (18%), Positives = 104/339 (30%), Gaps = 108/339 (31%)

Query: 2   SKPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
            +  +LL       +S  A +  +         + +  + +   I+ +     +      
Sbjct: 14  DRINVLLLEG----ISQTAVEYFKSSGYTNVTHLPKA-LDKADLIKAISSAHIIGIRSRT 68

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
           ++ +E    +   L  +  FSVG + + L   + RGI V             FN      
Sbjct: 69  QLTEEIF-AAANRLIAVGCFSVGTNQVELKAARKRGIPV-------------FN------ 108

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
                  + FS                        ++ +VAE  IG  I + RR      
Sbjct: 109 -------APFS------------------------NTRSVAELVIGEIIMLMRRIFPRSV 137

Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------T 212
              +G W      +       + G T+GIVG                             
Sbjct: 138 SAHAGGWEKTAIGSR-----EVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ 192

Query: 213 ELGAQLVP-LDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
               +    LD L   SD + +    +K T +LI   +              RG  +D E
Sbjct: 193 YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLE 252

Query: 259 ALVEFLRDKKIGGAGLDVMIPEP----MPADHPLVQLDN 293
           AL + L++  + GA +DV   EP         PL  L+N
Sbjct: 253 ALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLEN 291

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  109 bits (274), Expect = 2e-27
 Identities = 59/339 (17%), Positives = 98/339 (28%), Gaps = 108/339 (31%)

Query: 2   SKPKLLLTRNDYPRVSP-AYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQ 60
            K K LL       V   A + L               +  +   E ++    +      
Sbjct: 3   DKIKFLLVEG----VHQKALESLRAAGYTNIEFHKGA-LDDEQLKESIRDAHFIGLRSRT 57

Query: 61  KVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
            + ++ +  + E L  I  F++G + + LD    RG                      I 
Sbjct: 58  HLTEDVI-NAAEKLVAIGAFAIGTNQVDLDAAAKRG----------------------IP 94

Query: 121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 180
           V N    + FS                        ++ +VAE  IG  + + R   + + 
Sbjct: 95  VFN----APFS------------------------NTRSVAELVIGELLLLLRGVPEANA 126

Query: 181 CIASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------- 211
               G        +         G  +GI+G                             
Sbjct: 127 KAHRGVGNKLAAGSF-----EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 181

Query: 212 TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE 258
                Q+  L  L   SD + +       T+ ++G K+              RG ++D  
Sbjct: 182 LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP 241

Query: 259 ALVEFLRDKKIGGAGLDVMIPEP----MPADHPLVQLDN 293
           AL + L  K + GA +DV   EP     P   PL + DN
Sbjct: 242 ALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDN 280

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  105 bits (264), Expect = 1e-26
 Identities = 38/224 (16%), Positives = 61/224 (27%), Gaps = 57/224 (25%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIR------VGTVGPVSSDAVAEFNIGLAIAVSR 173
           A + LK +     G D +         +                  + E+ +   +   R
Sbjct: 56  AGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFR 115

Query: 174 RFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-ELGAQLVP------------ 220
           RF           W      T           +VGI+G   LGA++              
Sbjct: 116 RFDDYQALKNQALWKPLPEYT-------REEFSVGIMGAGVLGAKVAESLQAWGFPLRCW 168

Query: 221 ------------------LDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------ 250
                             L     Q+  +      T  T  +I  +              
Sbjct: 169 SRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNL 228

Query: 251 -RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
            RG  + +  L+  L   K+ GA LDV   EP+P + PL +   
Sbjct: 229 ARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPR 272

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  104 bits (261), Expect = 7e-26
 Identities = 53/337 (15%), Positives = 91/337 (27%), Gaps = 131/337 (38%)

Query: 2   SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
           +  K+L+  N    +  A ++   + ++   P       R I +E+L    AL+     K
Sbjct: 2   NAMKILVDEN----MPYARELFSRLGEVKAVP------GRPIPVEELNHADALMVRSVTK 51

Query: 62  VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           V++  L   G  +  + T + G DH+    +K  G                      I  
Sbjct: 52  VNESLLS--GTPINFVGTATAGTDHVDEAWLKQAG----------------------IGF 87

Query: 122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 181
                 +                           ++ AV E+     + ++ R       
Sbjct: 88  SA----APGC------------------------NAIAVVEYVFSALLMLAERDG----- 114

Query: 182 IASGEWALKQTQTVISDIIGLNGSTVGIVG----------------------------TE 213
                               L   T+GIVG                              
Sbjct: 115 ------------------FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG 156

Query: 214 LGAQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLD 256
                  LD L  ++D +     L KD    T  L                   RG ++D
Sbjct: 157 DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVD 216

Query: 257 QEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
             AL+  L   +     LDV   EP   +  L++  +
Sbjct: 217 NAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVD 252

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 70/220 (31%)

Query: 119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 178
           +A   ++ + T ++G DHL LD     GI   +    ++  V ++ +G  +A++    +G
Sbjct: 54  LAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV--RG 111

Query: 179 HNCIASGEWALKQTQTVISDIIGLNGSTVGIVG--------------------------- 211
            +                     L   T G+VG                           
Sbjct: 112 AD---------------------LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQ 150

Query: 212 -TELGAQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGG 253
             E   + V L+ L A++D I +   L +D    T  L+   +              RG 
Sbjct: 151 AREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGA 210

Query: 254 LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN 293
           ++D +AL   L         LDV   E  P   P +    
Sbjct: 211 VVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARC 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.76
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.72
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.69
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.44
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.01
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.95
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.48
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.45
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.45
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.27
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.25
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.97
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.71
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.4
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.18
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.12
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.95
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.93
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.92
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.81
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.77
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.7
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.68
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.63
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.59
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.41
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.24
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.17
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.11
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.03
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.01
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.94
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.93
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.9
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.88
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	95.78
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.7
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	95.58
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.5
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.49
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.46
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.03
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.01
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	94.75
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	94.48
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	94.26
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	94.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	93.83
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	93.46
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	93.34
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	93.33
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	93.14
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	92.15
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	91.91
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	91.46
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	91.34
1ccw_A	137	Protein (glutamate mutase); coenzyme B12, radical	90.97
3re1_A	269	Uroporphyrinogen-III synthetase; HEMD-like family,	90.82
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	90.57
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	90.51
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	89.15
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	87.7
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	87.14
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	87.02
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	86.83
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	86.1
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	84.68
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	84.32
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	83.72
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	83.14
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	82.92
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	82.63
4es6_A	254	Uroporphyrinogen-III synthase; heme-biosynthesis,	82.46
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	82.39
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	81.89
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	81.39
3mw8_A	240	Uroporphyrinogen-III synthase; structural genomics	81.32
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	81.07
3qha_A	296	Putative oxidoreductase; seattle structural genomi	80.82
3l07_A	285	Bifunctional protein fold; structural genomics, ID	80.81
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	80.75

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=2.5e-51  Score=381.83  Aligned_cols=237  Identities=29%  Similarity=0.437  Sum_probs=208.3

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      |+|||||++++ ++  ++.++.|++.++++.+.... ..+.+++.+.++++|++++++..++++++|++++|+||+|+++
T Consensus        26 ~~~~kvlv~~~-~~--~~~~~~l~~~~~v~~~~~~~-~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~  101 (345)
T 4g2n_A           26 HPIQKAFLCRR-FT--PAIEAELRQRFDLEVNLEDT-VLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATL  101 (345)
T ss_dssp             -CCCEEEESSC-CC--HHHHHHHHHHSEEEECTTCC-CCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEES
T ss_pred             CCCCEEEEeCC-CC--HHHHHHHHccCCEEEecCCC-CCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEc
Confidence            46899999995 88  89999999999998754322 5789999999999999999877899999999876788888888


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|+||+++++++||.|+|+                                                  |++++.+|
T Consensus       102 ~~G~D~id~~~a~~~gI~V~n~--------------------------------------------------pg~~~~~v  131 (345)
T 4g2n_A          102 SVGYDHIDMAAARSLGIKVLHT--------------------------------------------------PDVLSDAC  131 (345)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSCCHHHH
T ss_pred             CCcccccCHHHHHhCCEEEEEC--------------------------------------------------CcccchHH
Confidence            8888888888777777666666                                                  88899999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------  212 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------  212 (294)
                      ||++++++|++.|++.++.+.+++|.|..+......|  ++++|||+||||+                            
T Consensus       132 AE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g--~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~  209 (345)
T 4g2n_A          132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLG--MGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSH  209 (345)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCB--CCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCH
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccc--cccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcch
Confidence            9999999999999999999999999998654333456  8999999999999                            


Q ss_pred             --cCCCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         213 --ELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       213 --~~~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                        ..+.++. ++++++++||+|++|+|+|++|+++|+++.|             ||++||++||++||++|+|+||+|||
T Consensus       210 ~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDV  289 (345)
T 4g2n_A          210 ALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDV  289 (345)
T ss_dssp             HHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred             hhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecC
Confidence              1133444 8999999999999999999999999999988             99999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCCCCC
Q psy5259         277 MIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       277 ~~~EP~~~~~~l~~~~nv  294 (294)
                      |++|| +.++|||++|||
T Consensus       290 f~~EP-~~~~pL~~~~nv  306 (345)
T 4g2n_A          290 FANEP-AIDPRYRSLDNI  306 (345)
T ss_dssp             CTTTT-SCCTTGGGCTTE
T ss_pred             CCCCC-CCCchHHhCCCE
Confidence            99999 888999999996

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=7.4e-49  Score=363.92  Aligned_cols=234  Identities=27%  Similarity=0.454  Sum_probs=205.2

Q ss_pred             CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      |||||++.+ ++  ++.++.|++.++++...... ..+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++
T Consensus         2 ~~kvlv~~~-~~--~~~~~~l~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~-~~Lk~I~~~~~   76 (330)
T 4e5n_A            2 LPKLVITHR-VH--EEILQLLAPHCELITNQTDS-TLTREEILRRCRDAQAMMAFMPDRVDADFLQAC-PELRVIGCALK   76 (330)
T ss_dssp             CCEEEECSC-CC--HHHHHHHTTTCEEECCCSSS-CCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHC-TTCCEEEESSS
T ss_pred             CCEEEEecC-CC--HHHHHHHHhCCeEEEecCCC-CCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhC-CCCcEEEECCC
Confidence            799999994 88  99999999988888654322 468899999999999999976789999999987 78888888877


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|+||++.++++||.|+|+                                                  |++++.+|||
T Consensus        77 G~d~id~~~~~~~gI~v~n~--------------------------------------------------~~~~~~~vAE  106 (330)
T 4e5n_A           77 GFDNFDVDACTARGVWLTFV--------------------------------------------------PDLLTVPTAE  106 (330)
T ss_dssp             CCTTBCHHHHHHTTCEEECC--------------------------------------------------SSTTHHHHHH
T ss_pred             cccccCHHHHHhcCcEEEeC--------------------------------------------------CCCCchHHHH
Confidence            77777777777666666555                                                  8899999999


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------------
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------------  212 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------------  212 (294)
                      |+++++|++.|++..+++.+++|+|..|... ..|  ++++|||+||||+                              
T Consensus       107 ~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~--~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~  183 (330)
T 4e5n_A          107 LAIGLAVGLGRHLRAADAFVRSGKFRGWQPR-FYG--TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQT  183 (330)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTTCCCSCCSC-CCC--CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHhCCccccCcc-ccC--CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhH
Confidence            9999999999999999999999999865542 456  8999999999999                              


Q ss_pred             --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                        ..++++.++++++++||+|++|+|+|++|+++|+++.|             ||++||++||++||++|+|+||+||||
T Consensus       184 ~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~  263 (330)
T 4e5n_A          184 EQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVF  263 (330)
T ss_dssp             HHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             HHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEeccc
Confidence              11334568999999999999999999999999999887             999999999999999999999999999


Q ss_pred             CCC-------CCCCCCCCcCCCCC
Q psy5259         278 IPE-------PMPADHPLVQLDNC  294 (294)
Q Consensus       278 ~~E-------P~~~~~~l~~~~nv  294 (294)
                      ++|       |++.++|||++|||
T Consensus       264 ~~E~~~~~~~Pl~~~~~L~~~~nv  287 (330)
T 4e5n_A          264 EMEDWARADRPQQIDPALLAHPNT  287 (330)
T ss_dssp             GGGCTTCTTCCSSCCHHHHTCSSE
T ss_pred             ccccccccCCCCCCCchHHcCCCE
Confidence            999       99999999999996

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=4.5e-49  Score=365.84  Aligned_cols=228  Identities=28%  Similarity=0.433  Sum_probs=183.6

Q ss_pred             CeEEEecCCCCCCchhHHHhhc---cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           4 PKLLLTRNDYPRVSPAYDILED---MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~---~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      ||||++.  .|  ++....+++   ...+..+.......+.+    .++++|+++++..+++++++|+++ |+||+|+++
T Consensus         1 Mkil~~~--~~--~~~~p~~~e~l~~~~~~~~~~~~~~~~~~----~l~~ad~i~v~~~~~i~~~~l~~~-p~Lk~I~~~   71 (334)
T 3kb6_A            1 MNVLFTS--VP--QEDVPFYQEALKDLSLKIYTTDVSKVPEN----ELKKAELISVFVYDKLTEELLSKM-PRLKLIHTR   71 (334)
T ss_dssp             -CEEECS--CC--TTHHHHHHHHTTTSCEEECSSCGGGSCHH----HHHHCSEEEECTTSCBCHHHHHTC-TTCCEEEES
T ss_pred             CEEEEeC--CC--cccCHHHHHHHHhCCcEEEeCCcccCCHH----HhcCCCEEEEeCCCCCCHHHHhcC-CCCcEEEEC
Confidence            6799986  45  333333332   23344333221123333    467899999988889999999987 778777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|+||++.++++||.|+|+                                                  |++++.+|
T Consensus        72 ~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~v  101 (334)
T 3kb6_A           72 SVGFDHIDLDYCKKKGILVTHI--------------------------------------------------PAYSPESV  101 (334)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECC--------------------------------------------------TTSCHHHH
T ss_pred             CcccchhcHHHHHHCCCEEEEC--------------------------------------------------CCcCcHHH
Confidence            7777777777666656555555                                                  88999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------  212 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------  212 (294)
                      |||+++++|++.|++..+.+.++.+.|..+..  ..|  ++++|||+||+|+                            
T Consensus       102 AE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~--~~~--~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~  177 (334)
T 3kb6_A          102 AEHTFAMILTLVKRLKRIEDRVKKLNFSQDSE--ILA--RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED  177 (334)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGG--GCB--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             HHHHHHHHHHHhhccccccccccccccccccc--ccc--ceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchh
Confidence            99999999999999999999999999965443  456  8999999999999                            


Q ss_pred             --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                        +.+..+.+|+++|++||+||+|||+|++|+||||++.|             ||++|||+||++||++|+|+||+||||
T Consensus       178 ~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~  257 (334)
T 3kb6_A          178 LKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVF  257 (334)
T ss_dssp             HHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCC
T ss_pred             hhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCC
Confidence              23456779999999999999999999999999999999             999999999999999999999999999


Q ss_pred             CCCCCCCCC---------------CCcCCCCC
Q psy5259         278 IPEPMPADH---------------PLVQLDNC  294 (294)
Q Consensus       278 ~~EP~~~~~---------------~l~~~~nv  294 (294)
                      ++||++.++               |||++|||
T Consensus       258 ~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nv  289 (334)
T 3kb6_A          258 EDEEILILKKYTEGKATDKNLKILELACKDNV  289 (334)
T ss_dssp             TTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTE
T ss_pred             CCCCCcccccccccccccccccchhhccCCCE
Confidence            999987766               68888986

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.7e-49  Score=365.89  Aligned_cols=233  Identities=26%  Similarity=0.386  Sum_probs=170.5

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      |+|||||++++ ++  ++.++.|++.|+++.+..   ..+++++.+.++++|++++++..++++++|+.+ |+||+|+++
T Consensus        28 ~~~~~vl~~~~-~~--~~~~~~L~~~~~v~~~~~---~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~-p~Lk~I~~~  100 (340)
T 4dgs_A           28 NVKPDLLLVEP-MM--PFVMDELQRNYSVHRLYQ---AADRPALEAALPSIRAVATGGGAGLSNEWMEKL-PSLGIIAIN  100 (340)
T ss_dssp             -----CEECSC-CC--HHHHHTHHHHSCCEETTC---GGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHC-SSCCEEEEE
T ss_pred             CCCCEEEEECC-CC--HHHHHHHhcCCcEEEeCC---CCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhC-CCCEEEEEC
Confidence            67999999995 88  999999999999987643   246788888889999999987789999999986 778777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|+||+++++++||.|+|+                                                  |++++.+|
T Consensus       101 g~G~d~id~~~a~~~gI~V~n~--------------------------------------------------pg~~~~~v  130 (340)
T 4dgs_A          101 GVGTDKVDLARARRRNIDVTTT--------------------------------------------------PGVLADDV  130 (340)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSSSHHHH
T ss_pred             CCCccccCHHHHHhCCEEEEEC--------------------------------------------------CCCCcchH
Confidence            7777777777776666666555                                                  88999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------c---------------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------E---------------  213 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~---------------  213 (294)
                      ||++++++|++.|++.++++.+++|.|.+... +..|  ++++|||+||||+            .               
T Consensus       131 AE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~--~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~  207 (340)
T 4dgs_A          131 ADLGIALMLAVLRRVGDGDRLVREGRWAAGEQ-LPLG--HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG  207 (340)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCC--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT
T ss_pred             HHHHHHHHHHHHhChHHHHHHHhcCCcccccC-cCcc--ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc
Confidence            99999999999999999999999999975311 1346  8999999999999            1               


Q ss_pred             CCCc-ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259         214 LGAQ-LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIP  279 (294)
Q Consensus       214 ~~~~-~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~  279 (294)
                      .+.. ..++++++++||+|++|+|+|++|+++|+++.|             ||++||++||++||++|+|+||+||||++
T Consensus       208 ~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~  287 (340)
T 4dgs_A          208 VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVN  287 (340)
T ss_dssp             SCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSS
T ss_pred             cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCC
Confidence            1122 348999999999999999999999999999887             99999999999999999999999999999


Q ss_pred             CCCCCCCCCcCCCCC
Q psy5259         280 EPMPADHPLVQLDNC  294 (294)
Q Consensus       280 EP~~~~~~l~~~~nv  294 (294)
                      ||++. +|||++|||
T Consensus       288 EP~~~-~~L~~~~nv  301 (340)
T 4dgs_A          288 EPAIR-SEFHTTPNT  301 (340)
T ss_dssp             SSSCC-SHHHHSSSE
T ss_pred             CCCCc-cchhhCCCE
Confidence            99876 599999996

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=5.2e-47  Score=359.37  Aligned_cols=230  Identities=26%  Similarity=0.411  Sum_probs=194.0

Q ss_pred             CCeEEEecCCCCCCchhHHHhhc-cc-eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILED-MF-DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~-~~-~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      |||||+++ +++  +...+.|++ +| ++..++.   ..+.+++.+.++++|++++++..++++++|+++ |+||+|+++
T Consensus        15 ~~kIl~~~-~i~--~~~~~~l~~~g~~~v~~~~~---~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~-p~Lk~I~~~   87 (416)
T 3k5p_A           15 RINVLLLE-GIS--QTAVEYFKSSGYTNVTHLPK---ALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA-NRLIAVGCF   87 (416)
T ss_dssp             GSCEEECS-CCC--HHHHHHHHHTTCCCEEECSS---CCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHC-TTCCEEEEC
T ss_pred             CcEEEEEC-CCC--HHHHHHHHHCCCcEEEECCC---CCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhC-CCcEEEEEC
Confidence            68999999 488  888999987 57 7876654   478999999999999998887789999999986 778777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|+||+++++++||.|+|+                                                  |++++++|
T Consensus        88 ~~G~d~IDl~~a~~~GI~V~n~--------------------------------------------------p~~n~~aV  117 (416)
T 3k5p_A           88 SVGTNQVELKAARKRGIPVFNA--------------------------------------------------PFSNTRSV  117 (416)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECC--------------------------------------------------SSTTHHHH
T ss_pred             ccccCccCHHHHHhcCcEEEeC--------------------------------------------------CCcccHHH
Confidence            7777777777766666655555                                                  88999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------c------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------E------  213 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~------  213 (294)
                      ||++++++|++.|++..+.+.+++|.|....   ..+  ++++|||+||||+                     +      
T Consensus       118 AE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~---~~~--~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~  192 (416)
T 3k5p_A          118 AELVIGEIIMLMRRIFPRSVSAHAGGWEKTA---IGS--REVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ  192 (416)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC---TTC--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC
T ss_pred             HHHHHHHHHHHhcccHHHHHhhhcccccccC---CCC--ccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc
Confidence            9999999999999999999999999997532   234  8999999999999                     1      


Q ss_pred             -CCC-cccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         214 -LGA-QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       214 -~~~-~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                       .+. ...++++++++||+|++|+|+|++|+++|+++.|             ||++||++||++||++|+|+||+||||+
T Consensus       193 ~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~  272 (416)
T 3k5p_A          193 YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFP  272 (416)
T ss_dssp             BTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCS
T ss_pred             ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCC
Confidence             011 2348999999999999999999999999999988             9999999999999999999999999999


Q ss_pred             CCCCCCC----CCCcCCCCC
Q psy5259         279 PEPMPAD----HPLVQLDNC  294 (294)
Q Consensus       279 ~EP~~~~----~~l~~~~nv  294 (294)
                      +||++.+    +|||++|||
T Consensus       273 ~EP~~~~~~~~~pL~~~~nv  292 (416)
T 3k5p_A          273 VEPASNGERFSTPLQGLENV  292 (416)
T ss_dssp             SCCSSTTSCCCCTTTTCTTE
T ss_pred             CCCCCcccccchhHhcCCCE
Confidence            9998875    799999996

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=3.6e-46  Score=348.30  Aligned_cols=235  Identities=25%  Similarity=0.384  Sum_probs=194.5

Q ss_pred             CCCCeEEEecCCCCCCc---hhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEe-CCCCCCCHHHHhhcCCCceE
Q psy5259           1 MSKPKLLLTRNDYPRVS---PAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLC-NPHQKVDKEALDESGENLKV   76 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~---~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~-~~~~~~~~~~l~~~~~~lk~   76 (294)
                      |+ |||++++. ++...   +.++.|+ .+++..++..  ..+.+++.+.++++|++++ +...++++++|+.+ |+||+
T Consensus         1 ms-mki~~~d~-~~~~~~~~~~~~~l~-~~~v~~~~~~--~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~-~~Lk~   74 (352)
T 3gg9_A            1 MS-LKIAVLDD-YQDAVRKLDCFSLLQ-DHEVKVFNNT--VKGVGQLAARVADVEALVLIRERTRVTRQLLDRL-PKLKI   74 (352)
T ss_dssp             -C-CEEEECCC-TTCCGGGSGGGGGGT-TSEEEECCSC--CCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTC-TTCCE
T ss_pred             Cc-eEEEEEcC-ccccchhhhhhhhhc-CceEEEecCC--CCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhC-CCCeE
Confidence            65 89999984 65322   2345554 4888887653  2478899999999999998 56689999999986 67777


Q ss_pred             EEeccccC----cccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEee
Q psy5259          77 ISTFSVGH----DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTV  152 (294)
Q Consensus        77 i~~~~~G~----d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~  152 (294)
                      |+..++|+    |+||+++++++||.|+|+                                                  
T Consensus        75 I~~~g~G~~~~~d~id~~~a~~~gI~V~n~--------------------------------------------------  104 (352)
T 3gg9_A           75 ISQTGRVSRDAGGHIDLEACTDKGVVVLEG--------------------------------------------------  104 (352)
T ss_dssp             EEESSCCCCSSSCSBCHHHHHHHTCEEECC--------------------------------------------------
T ss_pred             EEEeCcccCCccCcccHHHHHhCCeEEEEC--------------------------------------------------
Confidence            77777776    666666666555555554                                                  


Q ss_pred             CCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccc-------cccccccccCcCCCEEEEEcc-------------
Q psy5259         153 GPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQ-------TQTVISDIIGLNGSTVGIVGT-------------  212 (294)
Q Consensus       153 ~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~-------~~~~~g~~~~l~gktvgIiG~-------------  212 (294)
                      |++ +.+||||+++++|++.|++..+.+.+++|.|....       +....|  ++++|||+||||+             
T Consensus       105 pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~--~~l~g~tvGIIGlG~IG~~vA~~l~~  181 (352)
T 3gg9_A          105 KGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIG--RVLKGQTLGIFGYGKIGQLVAGYGRA  181 (352)
T ss_dssp             CCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSB--CCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccC--ccCCCCEEEEEeECHHHHHHHHHHHh
Confidence            888 99999999999999999999999999999997532       111345  8999999999999             


Q ss_pred             ------------------cCCCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHH
Q psy5259         213 ------------------ELGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEAL  260 (294)
Q Consensus       213 ------------------~~~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL  260 (294)
                                        ..++++. ++++++++||+|++|+|+|++|+++|+++.|             ||++||++||
T Consensus       182 ~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL  261 (352)
T 3gg9_A          182 FGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGM  261 (352)
T ss_dssp             TTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHH
T ss_pred             CCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHH
Confidence                              2345555 8999999999999999999999999999888             9999999999


Q ss_pred             HHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         261 VEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       261 ~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      ++||++|+|+||+||||++||+++++|||++|||
T Consensus       262 ~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv  295 (352)
T 3gg9_A          262 VTALNRGRPGMAAIDVFETEPILQGHTLLRMENC  295 (352)
T ss_dssp             HHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTE
T ss_pred             HHHHHhCCccEEEecccCCCCCCCCChhhcCCCE
Confidence            9999999999999999999999999999999996

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=1.9e-46  Score=346.32  Aligned_cols=226  Identities=24%  Similarity=0.288  Sum_probs=186.0

Q ss_pred             CCCCeEEEecCCCCCCchhHHHh-hcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDIL-EDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS   78 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l-~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~   78 (294)
                      |.|||||++.+ ..  +...+.| ++. .++.+...    .+.+++.+.++++|+++++  .++++++|+++ |+||+|+
T Consensus         3 ~~~mkili~~~-~~--~~~~~~L~~~~~p~~~~~~~----~~~~~~~~~~~~ad~li~~--~~~~~~~l~~~-~~Lk~I~   72 (324)
T 3hg7_A            3 LSQRTLLLLSQ-DN--AHYERLLKAAHLPHLRILRA----DNQSDAEKLIGEAHILMAE--PARAKPLLAKA-NKLSWFQ   72 (324)
T ss_dssp             -CCEEEEEEST-TH--HHHHHHHHHSCCTTEEEEEC----SSHHHHHHHGGGCSEEEEC--HHHHGGGGGGC-TTCCEEE
T ss_pred             ccccEEEEecC-CC--HHHHHHHhhccCCCeEEEeC----CChhHHHHHhCCCEEEEEC--CCCCHHHHhhC-CCceEEE
Confidence            46899999995 76  7888888 553 34444322    3567888899999999985  35667888875 6666666


Q ss_pred             eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259          79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD  158 (294)
Q Consensus        79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~  158 (294)
                      +.++|+|+||.+.++                                                  + ||.|+|+|++++.
T Consensus        73 ~~~~G~d~id~~~~~--------------------------------------------------~-gI~v~n~~g~~~~  101 (324)
T 3hg7_A           73 STYAGVDVLLDARCR--------------------------------------------------R-DYQLTNVRGIFGP  101 (324)
T ss_dssp             ESSSCCGGGSCTTSC--------------------------------------------------C-SSEEECCCSCCHH
T ss_pred             ECCCCCCccChHHHh--------------------------------------------------C-CEEEEECCCcChH
Confidence            666666666555443                                                  2 5556666999999


Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------cC---
Q psy5259         159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------EL---  214 (294)
Q Consensus       159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~~---  214 (294)
                      +||||+++++|++.|++..+.+.+++|.|..     ..+  ++++|||+||||+                     +.   
T Consensus       102 ~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-----~~~--~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  174 (324)
T 3hg7_A          102 LMSEYVFGHLLSLMRQLPLYREQQKQRLWQS-----HPY--QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGR  174 (324)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC-----CCC--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHhhCCCcC-----CCC--cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChH
Confidence            9999999999999999999999999999975     234  8999999999999                     00   


Q ss_pred             -------CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259         215 -------GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL  274 (294)
Q Consensus       215 -------~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~L  274 (294)
                             .....++++++++||+|++|+|+|++|+++|+++.|             ||++||++||++||++|+|+||+|
T Consensus       175 ~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~l  254 (324)
T 3hg7_A          175 ERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVL  254 (324)
T ss_dssp             CCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEE
T ss_pred             HhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEe
Confidence                   012357999999999999999999999999999998             999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcCCCCC
Q psy5259         275 DVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       275 DV~~~EP~~~~~~l~~~~nv  294 (294)
                      |||++||+|+++|||++|||
T Consensus       255 DV~~~EPl~~~~pL~~~~nv  274 (324)
T 3hg7_A          255 DVFEQEPLPADSPLWGQPNL  274 (324)
T ss_dssp             SCCSSSSCCTTCTTTTCTTE
T ss_pred             ccCCCCCCCCCChhhcCCCE
Confidence            99999999999999999996

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.9e-46  Score=349.92  Aligned_cols=221  Identities=28%  Similarity=0.458  Sum_probs=187.7

Q ss_pred             hhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCC--CCCCHHHHhhcCCCceEEEeccccCcccChhhHhh
Q psy5259          18 PAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPH--QKVDKEALDESGENLKVISTFSVGHDHLHLDQIKS   94 (294)
Q Consensus        18 ~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~--~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~   94 (294)
                      ...+.|++ +++++.++..  ..+.+++.+.++++|++++++.  .++++++|+++ |+||+|++.++|+|+||++.+++
T Consensus        31 ~~~~~L~~~g~ev~~~~~~--~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~-p~Lk~i~~~g~G~d~id~~~a~~  107 (351)
T 3jtm_A           31 GIRDWLESQGHQYIVTDDK--EGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAGIGSDHIDLQAAAA  107 (351)
T ss_dssp             GCHHHHHHTTCEEEEESCC--SSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHC-SSCCEEEESSSCCTTBCHHHHHH
T ss_pred             HHHHHHHHCCCEEEEeCCC--CCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhC-CCCeEEEEeCeeecccCHHHHHh
Confidence            45677776 6899887654  2466789999999999998743  46999999986 77888888777777777777776


Q ss_pred             CCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcC
Q psy5259          95 RGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR  174 (294)
Q Consensus        95 ~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~  174 (294)
                      +||.|+|+                                                  |++++.+||||+++++|++.|+
T Consensus       108 ~gI~V~n~--------------------------------------------------~g~~~~~vAE~~~~l~L~~~R~  137 (351)
T 3jtm_A          108 AGLTVAEV--------------------------------------------------TGSNVVSVAEDELMRILILMRN  137 (351)
T ss_dssp             TTCEEEEC--------------------------------------------------TTTTHHHHHHHHHHHHHHHHHT
T ss_pred             cCeeEEEC--------------------------------------------------CCcCchHHHHHHHHHHHHHhhC
Confidence            66666555                                                  8899999999999999999999


Q ss_pred             chhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------------cCCCccc-CH
Q psy5259         175 FQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------------ELGAQLV-PL  221 (294)
Q Consensus       175 ~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------------------~~~~~~~-~l  221 (294)
                      +..+++.+++|.|..... ...+  ++++|||+||||+                                +.++++. ++
T Consensus       138 ~~~~~~~~~~g~W~~~~~-~~~~--~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l  214 (351)
T 3jtm_A          138 FVPGYNQVVKGEWNVAGI-AYRA--YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDL  214 (351)
T ss_dssp             HHHHHHHHHTTCCCHHHH-HTTC--CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCH
T ss_pred             cHHHHHHHHcCCCccccc-cCCc--ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCH
Confidence            999999999999974321 1234  7999999999999                                1133344 89


Q ss_pred             HHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCC
Q psy5259         222 DTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPL  288 (294)
Q Consensus       222 ~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l  288 (294)
                      ++++++||+|++|+|+|++|+|+||++.|             ||++||++||++||++|+|+||+||||++||+|+++||
T Consensus       215 ~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL  294 (351)
T 3jtm_A          215 NEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPW  294 (351)
T ss_dssp             HHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGG
T ss_pred             HHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChh
Confidence            99999999999999999999999999988             99999999999999999999999999999999999999


Q ss_pred             cCCCCC
Q psy5259         289 VQLDNC  294 (294)
Q Consensus       289 ~~~~nv  294 (294)
                      |++|||
T Consensus       295 ~~~~nv  300 (351)
T 3jtm_A          295 RYMPNQ  300 (351)
T ss_dssp             GTSTTB
T ss_pred             hcCCCE
Confidence            999996

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=8.6e-46  Score=351.59  Aligned_cols=230  Identities=25%  Similarity=0.363  Sum_probs=188.5

Q ss_pred             CCeEEEecCCCCCCchhHHHhhc-cc-eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILED-MF-DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~-~~-~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      ||||++++ +++  +...+.|++ ++ ++..++.   ..+.+++.+.++++|++++++.+++++++|+.+ |+||+|+++
T Consensus         4 ~~kil~~~-~~~--~~~~~~l~~~~~~~v~~~~~---~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~   76 (404)
T 1sc6_A            4 KIKFLLVE-GVH--QKALESLRAAGYTNIEFHKG---ALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAF   76 (404)
T ss_dssp             SCCEEECS-CCC--HHHHHHHHHTTCCCEEECSS---CCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEEC
T ss_pred             ceEEEEeC-CCC--HHHHHHHHhCCCcEEEEcCC---CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCcEEEEC
Confidence            67999998 477  888888877 47 7877653   468899999999999998887789999999986 778777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|+||+++++++||.|+|+                                                  |++++.+|
T Consensus        77 ~~G~d~iD~~~a~~~GI~V~n~--------------------------------------------------p~~n~~~v  106 (404)
T 1sc6_A           77 AIGTNQVDLDAAAKRGIPVFNA--------------------------------------------------PFSNTRSV  106 (404)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECC--------------------------------------------------TTTTHHHH
T ss_pred             CcccCccCHHHHHhCCCEEEec--------------------------------------------------CcccHHHH
Confidence            7777777777766666655555                                                  88999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------------c
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------------E  213 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------------~  213 (294)
                      |||+++++|++.|++.++++.+++|.|.+..   ..|  .+++|||+||||+                           .
T Consensus       107 AE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~---~~~--~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~  181 (404)
T 1sc6_A          107 AELVIGELLLLLRGVPEANAKAHRGVGNKLA---AGS--FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP  181 (404)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHTCCC--------C--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHcCCccccC---CCc--cccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc
Confidence            9999999999999999999999999997532   235  8999999999999                           1


Q ss_pred             C-CCcc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         214 L-GAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       214 ~-~~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                      . +++. .++++++++||+|++|+|+|++|+++|+++.|             ||++||++||+++|++|+++||+||||+
T Consensus       182 ~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~  261 (404)
T 1sc6_A          182 LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFP  261 (404)
T ss_dssp             CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC--
T ss_pred             cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecC
Confidence            1 1333 38999999999999999999999999999888             9999999999999999999999999999


Q ss_pred             CCCCCC----CCCCcCCCCC
Q psy5259         279 PEPMPA----DHPLVQLDNC  294 (294)
Q Consensus       279 ~EP~~~----~~~l~~~~nv  294 (294)
                      +||++.    ++|||++|||
T Consensus       262 ~EP~~~~~~~~~pL~~~~nv  281 (404)
T 1sc6_A          262 TEPATNSDPFTSPLAEFDNV  281 (404)
T ss_dssp             -------CTTTGGGTTCTTE
T ss_pred             CCCCCccccccchhhcCCCE
Confidence            999874    4799999996

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.5e-45  Score=337.27  Aligned_cols=231  Identities=34%  Similarity=0.580  Sum_probs=194.0

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIST   79 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~   79 (294)
                      |+||||+++.+ ++  ++..+.|++ .+++....    ..+.+++.+.++++|+++++...++++++|+.+ |+||+|++
T Consensus         1 ~~~~~il~~~~-~~--~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~   72 (307)
T 1wwk_A            1 MKRMKVLVAAP-LH--EKAIQVLKDAGLEVIYEE----YPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA-PKLKVIAR   72 (307)
T ss_dssp             ---CEEEECSC-CC--HHHHHHHHHTTCEEEECS----SCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTC-TTCCEEEE
T ss_pred             CCceEEEEeCC-CC--HHHHHHHHhCCeEEEeCC----CCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCeEEEE
Confidence            67899999984 77  777888877 56775422    257888999999999999886667999999876 67777777


Q ss_pred             ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259          80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA  159 (294)
Q Consensus        80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~  159 (294)
                      .++|+|+||++.++++||.|+|+                                                  |++++.+
T Consensus        73 ~~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------~g~~~~~  102 (307)
T 1wwk_A           73 AGVGLDNIDVEAAKEKGIEVVNA--------------------------------------------------PAASSRS  102 (307)
T ss_dssp             SSSCCTTBCHHHHHHHTCEEECC--------------------------------------------------GGGGHHH
T ss_pred             CCccccccCHHHHHhCCcEEEEC--------------------------------------------------CCCChHH
Confidence            77777777666666555555555                                                  8899999


Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------------
Q psy5259         160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------------  212 (294)
Q Consensus       160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------------  212 (294)
                      ||||+++++|++.|++..+++.+++|.|.+..   ..|  ++++|+|+||||+                           
T Consensus       103 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~--~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  177 (307)
T 1wwk_A          103 VAELAVGLMFSVARKIAFADRKMREGVWAKKE---AMG--IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE  177 (307)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTT---CCB--CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHcCCCCccC---cCC--cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            99999999999999999999999999996421   345  8999999999999                           


Q ss_pred             ----cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259         213 ----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD  275 (294)
Q Consensus       213 ----~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LD  275 (294)
                          ..+++..++++++++||+|++|+|++++|+++|+++.|             ||++||+++|.++|++|+|+||+||
T Consensus       178 ~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lD  257 (307)
T 1wwk_A          178 ERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLD  257 (307)
T ss_dssp             HHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEES
T ss_pred             hhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEe
Confidence                12345568999999999999999999999999998877             9999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcCCCCC
Q psy5259         276 VMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       276 V~~~EP~~~~~~l~~~~nv  294 (294)
                      ||++||+++++|||++|||
T Consensus       258 v~~~eP~~~~~~L~~~~nv  276 (307)
T 1wwk_A          258 VFEEEPLPKDHPLTKFDNV  276 (307)
T ss_dssp             CCSSSSCCTTCGGGGCTTE
T ss_pred             cCCCCCCCCCChHHhCCCE
Confidence            9999999899999999996

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=9.3e-46  Score=341.96  Aligned_cols=225  Identities=26%  Similarity=0.405  Sum_probs=184.9

Q ss_pred             CCeEEEecCCCCCCchhHHHhhccc-eEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILEDMF-DIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      |||||++.+ ++  ++..+.|++.+ ++......  ..+.+    .++++|+++++.. ++ +++|+...|+||+|++.+
T Consensus         1 m~kil~~~~-~~--~~~~~~L~~~~~~~~~~~~~--~~~~~----~~~~ad~l~~~~~-~~-~~~l~~~~~~Lk~I~~~~   69 (324)
T 3evt_A            1 MSLVLMAQA-TK--PEQLQQLQTTYPDWTFKDAA--AVTAA----DYDQIEVMYGNHP-LL-KTILARPTNQLKFVQVIS   69 (324)
T ss_dssp             -CEEEECSC-CC--HHHHHHHHHHCTTCEEEETT--SCCTT----TGGGEEEEESCCT-HH-HHHHHSTTCCCCEEECSS
T ss_pred             CcEEEEecC-CC--HHHHHHHHhhCCCeEEecCC--ccChH----HhCCcEEEEECCc-Ch-HHHHHhhCCCceEEEECC
Confidence            478999995 88  89999998843 33322221  12333    5788999988743 57 899943347888888888


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA  161 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA  161 (294)
                      +|+|+||++.++++||.|+|+                                                  |++++.+||
T Consensus        70 ~G~d~id~~~~~~~gI~v~n~--------------------------------------------------~g~~~~~vA   99 (324)
T 3evt_A           70 AGVDYLPLKALQAAGVVVANT--------------------------------------------------SGIHADAIS   99 (324)
T ss_dssp             SCCTTSCHHHHHHTTCEEECC--------------------------------------------------TTHHHHHHH
T ss_pred             ccccccCHHHHHHCCcEEEEC--------------------------------------------------CCcCchHHH
Confidence            888777777777666666666                                                  889999999


Q ss_pred             HHHHHHHHHHhcCchhh-hhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC-------------
Q psy5259         162 EFNIGLAIAVSRRFQQG-HNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG-------------  215 (294)
Q Consensus       162 E~al~l~l~~~r~~~~~-~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~-------------  215 (294)
                      ||+++++|++.|++..+ .+.++++.|....    .+  ++++|||+||||+            .+|             
T Consensus       100 E~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~--~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~  173 (324)
T 3evt_A          100 ESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TT--STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPA  173 (324)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CC--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred             HHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CC--ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchh
Confidence            99999999999999999 9999999997532    35  8999999999999            010             


Q ss_pred             ------CcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         216 ------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       216 ------~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                            ....++++++++||+|++|+|+|++|+++|+++.|             ||++||++||++||++|+|+||+|||
T Consensus       174 ~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV  253 (324)
T 3evt_A          174 DHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDV  253 (324)
T ss_dssp             TTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESS
T ss_pred             HhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCC
Confidence                  11347999999999999999999999999999988             99999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCCCCC
Q psy5259         277 MIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       277 ~~~EP~~~~~~l~~~~nv  294 (294)
                      |++||+|+++|||++|||
T Consensus       254 ~~~EPl~~~~pL~~~~nv  271 (324)
T 3evt_A          254 TEPEPLPTDHPLWQRDDV  271 (324)
T ss_dssp             CSSSSCCTTCGGGGCSSE
T ss_pred             CCCCCCCCCChhhcCCCE
Confidence            999999999999999996

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=335.66  Aligned_cols=229  Identities=29%  Similarity=0.546  Sum_probs=193.5

Q ss_pred             CCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           2 SKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         2 ~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      +++||+++++ ++  +...+.|++ .+++..++    ..+.+++.+.++++|++++++..++++++|+.+ |+||+|++.
T Consensus        25 ~~~~vli~~~-~~--~~~~~~l~~~~~~v~~~~----~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~   96 (335)
T 2g76_A           25 NLRKVLISDS-LD--PCCRKILQDGGLQVVEKQ----NLSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRA   96 (335)
T ss_dssp             -CCEEEECSC-CC--HHHHHHHHHHTCEEEECC----SCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-SSCCEEEES
T ss_pred             cceEEEEcCC-CC--HHHHHHHHhCCCEEEECC----CCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhC-CCCcEEEEC
Confidence            4568999884 76  777788877 46776653    257889999999999999887778999999986 777777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|+||++.++++||.|+|+                                                  |++++.+|
T Consensus        97 ~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~v  126 (335)
T 2g76_A           97 GTGVDNVDLEAATRKGILVMNT--------------------------------------------------PNGNSLSA  126 (335)
T ss_dssp             SSSCTTBCHHHHHHHTCEEECC--------------------------------------------------SSTTHHHH
T ss_pred             CCCcchhChHHHHhCCeEEEEC--------------------------------------------------CCccchHH
Confidence            7777777766666555555555                                                  88999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------  212 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------  212 (294)
                      |||+++++|++.|++..+.+.+++|.|....   ..|  .+++|+|+||||+                            
T Consensus       127 AE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~---~~~--~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~  201 (335)
T 2g76_A          127 AELTCGMIMCLARQIPQATASMKDGKWERKK---FMG--TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE  201 (335)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCCCTGG---GCB--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHcCCCCccC---CCC--cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh
Confidence            9999999999999999999999999996421   245  8999999999999                            


Q ss_pred             ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                         ..++++.++++++++||+|++|+|++++|+++||++.|             ||++||+++|+++|++|+|+||+|||
T Consensus       202 ~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV  281 (335)
T 2g76_A          202 VSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDV  281 (335)
T ss_dssp             HHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESC
T ss_pred             hhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEee
Confidence               12344568999999999999999999999999998877             99999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCCCCC
Q psy5259         277 MIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       277 ~~~EP~~~~~~l~~~~nv  294 (294)
                      |++|| ++++|||++|||
T Consensus       282 ~~~EP-~~~~~L~~~~nv  298 (335)
T 2g76_A          282 FTEEP-PRDRALVDHENV  298 (335)
T ss_dssp             CSSSS-CSCCHHHHSTTE
T ss_pred             cCCCC-CCCchHHhCCCE
Confidence            99999 567999999996

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=4.1e-45  Score=339.78  Aligned_cols=233  Identities=26%  Similarity=0.367  Sum_probs=183.4

Q ss_pred             CCeEEEecCCCCCCchhHHHhhc--cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHH-HHhhcC-CCceEEE
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILED--MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKE-ALDESG-ENLKVIS   78 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~--~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~-~l~~~~-~~lk~i~   78 (294)
                      ||||+++.. .+.-.+.++.+.+  ++++..++..   .+ +++.+.++++|++++++..+++++ +|++++ ++||+|+
T Consensus         1 Mmki~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~---~~-~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~   75 (343)
T 2yq5_A            1 MTKIAMYNV-SPIEVPYIEDWAKKNDVEIKTTDQA---LT-SATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIG   75 (343)
T ss_dssp             -CEEEEESC-CGGGHHHHHHHHHHHTCEEEEESSC---CS-TTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEEec-CcccHHHHHHHHHhCCeEEEECCCC---CC-HHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence            378888772 3322345555543  5688776542   33 567788999999999877899999 999762 3455555


Q ss_pred             eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259          79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD  158 (294)
Q Consensus        79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~  158 (294)
                      +.++|+|+||                                                  +++++++||.|+|+|++++.
T Consensus        76 ~~~~G~d~id--------------------------------------------------~~~~~~~gI~v~n~p~~~~~  105 (343)
T 2yq5_A           76 LRIVGFNTIN--------------------------------------------------FDWTKKYNLLVTNVPVYSPR  105 (343)
T ss_dssp             ESSSCCTTBC--------------------------------------------------SSTTCC--CEEECCSCSCHH
T ss_pred             ECceeecccc--------------------------------------------------hhHHHhCCEEEEECCCCCcH
Confidence            5555555554                                                  45555555666666999999


Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHh-cCCCCccccccccccccCcCCCEEEEEcc-------------------------
Q psy5259         159 AVAEFNIGLAIAVSRRFQQGHNCIA-SGEWALKQTQTVISDIIGLNGSTVGIVGT-------------------------  212 (294)
Q Consensus       159 ~VAE~al~l~l~~~r~~~~~~~~~~-~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------------------  212 (294)
                      +||||+++++|++.|++..+.+.++ +|+|. |... ..|  ++++|||+||||+                         
T Consensus       106 ~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~~-~~~--~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~  181 (343)
T 2yq5_A          106 AIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPSN-LIS--NEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAY  181 (343)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCGG-GCB--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-cccC-CCc--cccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCCh
Confidence            9999999999999999999999999 89874 2222 455  8999999999999                         


Q ss_pred             ----cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259         213 ----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD  275 (294)
Q Consensus       213 ----~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LD  275 (294)
                          +.+.++.++++++++||+|++|+|+|++|+++|+++.|             ||++||++||++||++|+|+||+||
T Consensus       182 ~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LD  261 (343)
T 2yq5_A          182 NPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLD  261 (343)
T ss_dssp             CGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEES
T ss_pred             hhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEec
Confidence                11234568999999999999999999999999999988             9999999999999999999999999


Q ss_pred             CCCCCC--CCCC-----------CCCcCCCCC
Q psy5259         276 VMIPEP--MPAD-----------HPLVQLDNC  294 (294)
Q Consensus       276 V~~~EP--~~~~-----------~~l~~~~nv  294 (294)
                      ||++||  ++.+           +|||++|||
T Consensus       262 V~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nv  293 (343)
T 2yq5_A          262 TLAGESSYFGHTGLTDSEIPEDYKTLAKMPNV  293 (343)
T ss_dssp             CCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTE
T ss_pred             ccccCCCccccccccccccccchhHHhcCCCE
Confidence            999999  5555           489999996

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=7.2e-45  Score=340.34  Aligned_cols=232  Identities=26%  Similarity=0.390  Sum_probs=181.8

Q ss_pred             CCCeEEEecCCCCC------CchhHHHhhccceEEEcCCCCCCCCHHHHHH-HccCCcEEEeCCCCCCCHHHHhhcCCCc
Q psy5259           2 SKPKLLLTRNDYPR------VSPAYDILEDMFDIITYPISEGRMPRDIFIE-KLKGCSALLCNPHQKVDKEALDESGENL   74 (294)
Q Consensus         2 ~k~kvl~~~~~~~~------~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~-~l~~~d~~~~~~~~~~~~~~l~~~~~~l   74 (294)
                      +++++++..+ .+.      .++.++.|++.++++.+..    .+.+++++ .+.++++++.+  .++++++|+++ |+|
T Consensus        26 ~~r~ivll~~-~~~~~~~~~~~~~~~~L~~~~~v~~~~~----~~~~e~~~~~~~~~~~i~~~--~~i~~~~l~~~-p~L   97 (365)
T 4hy3_A           26 TERPLAISAP-EPRSLDLIFSDEARAALHSKYEIVEADP----ENIAGLGDDILGRARYIIGQ--PPLSAETLARM-PAL   97 (365)
T ss_dssp             --CCEEEEEC-TTSCHHHHCCHHHHHHHHHHSEEEECCG----GGGGGSCTTHHHHEEEEEEC--CCCCHHHHTTC-TTC
T ss_pred             CCCCEEEEcC-CcccccccCCHHHHHHHhCCcEEEECCC----CChHHHHHHhhCCeEEEEeC--CCCCHHHHhhC-CCC
Confidence            4556777775 542      1447888999899985432    34555554 34678887753  68999999986 777


Q ss_pred             eEEEec-cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeC
Q psy5259          75 KVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG  153 (294)
Q Consensus        75 k~i~~~-~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~  153 (294)
                      |+|+.. ++|+|+||+++++++||.|+|+                                                  |
T Consensus        98 k~I~~~~~~G~d~iD~~~a~~~GI~V~n~--------------------------------------------------~  127 (365)
T 4hy3_A           98 RSILNVESNLLNNMPYEVLFQRGIHVVTT--------------------------------------------------G  127 (365)
T ss_dssp             CEEECCSSSCCSCSCTTHHHHSCCEEEEC--------------------------------------------------G
T ss_pred             eEEEEecccccCcccHHHHhcCCeEEEeC--------------------------------------------------C
Confidence            777643 5666666666665555555544                                                  8


Q ss_pred             CCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------
Q psy5259         154 PVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------  212 (294)
Q Consensus       154 ~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------  212 (294)
                      ++++.+||||+++++|++.|++..+.+.+++|+|.........|  ++++|||+||||+                     
T Consensus       128 ~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~--~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~  205 (365)
T 4hy3_A          128 QVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASA--RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVF  205 (365)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSC--CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEE
T ss_pred             CccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccc--cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEE
Confidence            99999999999999999999999999999999953111111345  8999999999999                     


Q ss_pred             ----------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCc
Q psy5259         213 ----------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKI  269 (294)
Q Consensus       213 ----------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i  269 (294)
                                ..++++.++++++++||+|++|+|+|++|+++|+++.|             ||++||++||++||++|+|
T Consensus       206 d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  285 (365)
T 4hy3_A          206 DPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHI  285 (365)
T ss_dssp             CSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSS
T ss_pred             CCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCc
Confidence                      23455678999999999999999999999999999998             9999999999999999999


Q ss_pred             eEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         270 GGAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       270 ~ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      + |+||||++||+++++|||++|||
T Consensus       286 ~-aaLDV~~~EPl~~~~pL~~~~nv  309 (365)
T 4hy3_A          286 V-AASDVYPEEPLPLDHPVRSLKGF  309 (365)
T ss_dssp             E-EEESCCSSSSCCTTCGGGTCTTE
T ss_pred             e-EEeeCCCCCCCCCCChhhcCCCE
Confidence            8 99999999999999999999996

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-43  Score=326.36  Aligned_cols=232  Identities=34%  Similarity=0.618  Sum_probs=197.0

Q ss_pred             CeEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      ||||++.+ ++  ++.++.|++. +++..+...  ..+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++
T Consensus         1 ~~vl~~~~-~~--~~~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~i~~~~~   74 (311)
T 2cuk_A            1 MRVLVTRT-LP--GKALDRLRERGLEVEVHRGL--FLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSV   74 (311)
T ss_dssp             CEEEESSC-CS--SSTTHHHHHTTCEEEECCSS--CCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHS-TTCCEEECSSS
T ss_pred             CEEEEeCC-CC--HHHHHHHHhcCCeEEEecCC--CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCc
Confidence            68999884 77  7778888886 888765442  357889999999999999886678999999986 77888888888


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|+||++.++++||.|+|+                                                  |++++.+|||
T Consensus        75 G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~~~~vAE  104 (311)
T 2cuk_A           75 GVDHVDLEAARERGIRVTHT--------------------------------------------------PGVLTEATAD  104 (311)
T ss_dssp             CCTTBCHHHHHTTTCEEECC--------------------------------------------------CSTTHHHHHH
T ss_pred             CccccCHHHHHhCCcEEEEC--------------------------------------------------CCCChHHHHH
Confidence            87777777777666666555                                                  8899999999


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC--------------C
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG--------------A  216 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~--------------~  216 (294)
                      |+++++|++.|++..+++.+++|.|..+......|  ++++|+|+||||+            .++              .
T Consensus       105 ~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~--~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~  182 (311)
T 2cuk_A          105 LTLALLLAVARRVVEGAAYARDGLWKAWHPELLLG--LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPY  182 (311)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB--CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSSS
T ss_pred             HHHHHHHHHHcChHHHHHHHHcCCCCccccccccC--cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCccccc
Confidence            99999999999999999999999996432222345  8999999999999            111              2


Q ss_pred             cccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCC
Q psy5259         217 QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP  283 (294)
Q Consensus       217 ~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~  283 (294)
                      .+.++++++++||+|++|+|++++|+++|+++.|             ||.++|+++|.++|+ |+|+||+||||++||++
T Consensus       183 ~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~  261 (311)
T 2cuk_A          183 PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLP  261 (311)
T ss_dssp             CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCC
T ss_pred             ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCC
Confidence            3468999999999999999999999999997776             999999999999999 99999999999999999


Q ss_pred             CCCCCcCCCCC
Q psy5259         284 ADHPLVQLDNC  294 (294)
Q Consensus       284 ~~~~l~~~~nv  294 (294)
                      .++|||++|||
T Consensus       262 ~~~~L~~~~nv  272 (311)
T 2cuk_A          262 PGHPLYALPNA  272 (311)
T ss_dssp             TTSGGGGCTTE
T ss_pred             CCChhhhCCCE
Confidence            99999999996

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.6e-43  Score=325.59  Aligned_cols=233  Identities=30%  Similarity=0.462  Sum_probs=196.0

Q ss_pred             CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC-ceEEEeccc
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN-LKVISTFSV   82 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~-lk~i~~~~~   82 (294)
                      +||+++. .++  ++.++.|++.+++....... ..+.+++.+.++++|+++++...++++++|+.+ |+ ||+|++.++
T Consensus         2 ~~vl~~~-~~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~Lk~I~~~~~   76 (320)
T 1gdh_A            2 KKILITW-PLP--EAAMARARESYDVIAHGDDP-KITIDEMIETAKSVDALLITLNEKCRKEVIDRI-PENIKCISTYSI   76 (320)
T ss_dssp             CEEEESS-CCC--HHHHHHHHTTSEEEECCSTT-CCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHS-CTTCCEEEEESS
T ss_pred             cEEEEcC-CCC--HHHHHHHHhcCCEEEecCCC-CCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhC-CccceEEEECCc
Confidence            6899988 477  78888998877877654322 357889999999999999886678999999987 56 777777777


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|+||++.++++||.|+|+                                                  |++++.+|||
T Consensus        77 G~d~id~~~~~~~gi~v~n~--------------------------------------------------p~~~~~~vAE  106 (320)
T 1gdh_A           77 GFDHIDLDACKARGIKVGNA--------------------------------------------------PHGVTVATAE  106 (320)
T ss_dssp             CCTTBCHHHHHHTTCEEECC--------------------------------------------------CCSCHHHHHH
T ss_pred             ccccccHHHHHhCCcEEEEc--------------------------------------------------CCCCHHHHHH
Confidence            77777777666666655555                                                  8899999999


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------cC-------
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------EL-------  214 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~~-------  214 (294)
                      |+++++|++.|++..+++.+++|.|..+......|  .+++|+|+||||+                     +.       
T Consensus       107 ~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~--~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~  184 (320)
T 1gdh_A          107 IAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVG--EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSD  184 (320)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHcCCCCccccccccC--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhh
Confidence            99999999999999999999999996432222345  8999999999999                     21       


Q ss_pred             ----CCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         215 ----GAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       215 ----~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                          +..+. ++++++++||+|++|+|++++|+++|+++.|             ||.+||+++|.++|++|+|+||+|||
T Consensus       185 ~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv  264 (320)
T 1gdh_A          185 EASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV  264 (320)
T ss_dssp             HHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred             hhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeC
Confidence                22234 7999999999999999999999999998776             99999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCCCCC
Q psy5259         277 MIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       277 ~~~EP~~~~~~l~~~~nv  294 (294)
                      |++|| +.++|||++|||
T Consensus       265 ~~~eP-~~~~~L~~~~nv  281 (320)
T 1gdh_A          265 FAGEP-NINEGYYDLPNT  281 (320)
T ss_dssp             CTTTT-SCCTTGGGCTTE
T ss_pred             CCCCC-CCCChhhhCCCE
Confidence            99999 888999999996

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1e-42  Score=323.06  Aligned_cols=238  Identities=41%  Similarity=0.653  Sum_probs=202.3

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhcc--ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDM--FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS   78 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~--~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~   78 (294)
                      |+||||+++. .++  +..++.|++.  +++..++... ..+.+++.+.++++|++++++..++++++|+.++|+||+|+
T Consensus         6 ~~~~~il~~~-~~~--~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~   81 (330)
T 2gcg_A            6 VRLMKVFVTR-RIP--AEGRVALARAADCEVEQWDSDE-PIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS   81 (330)
T ss_dssp             -CCEEEEESS-CCC--HHHHHHHHHCTTEEEEECCSSS-CCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEE
T ss_pred             CCCCEEEEEC-CCC--HHHHHHHHhcCCceEEEecCCC-CCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEE
Confidence            3578999988 477  7888888876  7887665322 35789999999999999987677899999998767888888


Q ss_pred             eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259          79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD  158 (294)
Q Consensus        79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~  158 (294)
                      +.++|+|++|++.++++||.|+|+                                                  |++++.
T Consensus        82 ~~~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~~~  111 (330)
T 2gcg_A           82 TMSVGIDHLALDEIKKRGIRVGYT--------------------------------------------------PDVLTD  111 (330)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSTTHH
T ss_pred             ECCcccccccHHHHHhCCceEEeC--------------------------------------------------CCCChH
Confidence            888888888887777666666666                                                  888999


Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------
Q psy5259         159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------  212 (294)
Q Consensus       159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------------  212 (294)
                      +||||+++++|++.|++..+.+.+++|.|..+......|  +++.|+++||||+                          
T Consensus       112 ~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~--~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  189 (330)
T 2gcg_A          112 TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCG--YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP  189 (330)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCB--CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccC--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            999999999999999999999999999997543322346  8999999999999                          


Q ss_pred             ------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEE
Q psy5259         213 ------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG  273 (294)
Q Consensus       213 ------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~  273 (294)
                            ..+....++++++++||+|++|+|.+++|+++|+++.|             ||.++|+++|.++|++|++.||+
T Consensus       190 ~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~  269 (330)
T 2gcg_A          190 RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAG  269 (330)
T ss_dssp             CHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEE
T ss_pred             chhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEE
Confidence                  12333458999999999999999999999999997665             99999999999999999999999


Q ss_pred             eeCCCCCCCCCCCCCcCCCCC
Q psy5259         274 LDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       274 LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      ||||++||+++++||+++|||
T Consensus       270 lDv~~~epl~~~~~l~~~~nv  290 (330)
T 2gcg_A          270 LDVTSPEPLPTNHPLLTLKNC  290 (330)
T ss_dssp             ESCCSSSSCCTTCGGGGCTTE
T ss_pred             eCCCCCCCCCCCChhhcCCCE
Confidence            999999999999999999995

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=5.7e-43  Score=322.40  Aligned_cols=226  Identities=24%  Similarity=0.406  Sum_probs=193.2

Q ss_pred             CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      +|||+++.+ ++  +...+.|++ .+++.. ..   ..+.+++.+.++++|++++++..++++++|+.+ |+||+|++.+
T Consensus         5 ~mkil~~~~-~~--~~~~~~l~~~~~~v~~-~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~   76 (313)
T 2ekl_A            5 TVKALITDP-ID--EILIKTLREKGIQVDY-MP---EISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG-KKLKIIARAG   76 (313)
T ss_dssp             CCEEEECSC-CC--HHHHHHHHHTTCEEEE-CT---TCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-TTCCEEEECS
T ss_pred             ceEEEEECC-CC--HHHHHHHHhCCcEEEe-CC---CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEEcC
Confidence            679999984 77  777888887 467753 22   357889999999999999876678999999986 7777777777


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA  161 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA  161 (294)
                      +|+|++|++.++++||.|+|+                                                  |++++.+||
T Consensus        77 ~G~d~id~~~~~~~gi~v~n~--------------------------------------------------~g~~~~~vA  106 (313)
T 2ekl_A           77 IGLDNIDTEEAEKRNIKVVYA--------------------------------------------------PGASTDSAV  106 (313)
T ss_dssp             SCCTTBCHHHHHHTTCEEECC--------------------------------------------------TTTTHHHHH
T ss_pred             CCCCccCHHHHHhCCeEEEeC--------------------------------------------------CCCCchHHH
Confidence            777777777666666655555                                                  889999999


Q ss_pred             HHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-----------------------------
Q psy5259         162 EFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-----------------------------  212 (294)
Q Consensus       162 E~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-----------------------------  212 (294)
                      ||+++++|++.|++..+++.+++|.|..     ..+  .++.|+|+||||+                             
T Consensus       107 E~~~~~~L~~~R~~~~~~~~~~~g~w~~-----~~~--~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~  179 (313)
T 2ekl_A          107 ELTIGLMIAAARKMYTSMALAKSGIFKK-----IEG--LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK  179 (313)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTCCCC-----CCC--CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHcCCCCC-----CCC--CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH
Confidence            9999999999999999999999999952     345  8999999999999                             


Q ss_pred             --cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         213 --ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       213 --~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                        ..++.+.++++++++||+|++|+|++++|+++|+++.|             ||+++|+++|.++|++|+|+||+||||
T Consensus       180 ~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~  259 (313)
T 2ekl_A          180 AEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVF  259 (313)
T ss_dssp             HHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCC
T ss_pred             HHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecC
Confidence              12344568999999999999999999999999998877             999999999999999999999999999


Q ss_pred             CCCCCCCCC---CCcCCCCC
Q psy5259         278 IPEPMPADH---PLVQLDNC  294 (294)
Q Consensus       278 ~~EP~~~~~---~l~~~~nv  294 (294)
                      ++||++ ++   |||++|||
T Consensus       260 ~~eP~~-~~~~~~L~~~~nv  278 (313)
T 2ekl_A          260 WNEPPK-EEWELELLKHERV  278 (313)
T ss_dssp             SSSSCC-SHHHHHHHHSTTE
T ss_pred             CCCCCC-CcccchHhhCCCE
Confidence            999988 56   99999996

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=7.1e-43  Score=324.03  Aligned_cols=232  Identities=29%  Similarity=0.475  Sum_probs=193.2

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHH-HHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDI-FIEKLKGCSALLCNPHQKVDKEALDESGENLKVIST   79 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~-~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~   79 (294)
                      |+||+||++.+ ++  +..++.|++.+++..+...   .+.++ +.+.++++|++++++..++++++|+.+ |+||+|++
T Consensus        21 m~~~~vl~~~~-~~--~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~   93 (333)
T 3ba1_A           21 MEAIGVLMMCP-MS--TYLEQELDKRFKLFRYWTQ---PAQRDFLALQAESIRAVVGNSNAGADAELIDAL-PKLEIVSS   93 (333)
T ss_dssp             -CCCEEEECSC-CC--HHHHHHHHHHSEEEEGGGC---SSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHC-TTCCEEEE
T ss_pred             CCCCEEEEeCC-CC--HHHHHHHHhcCCEEEecCC---CChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhC-CCCcEEEE
Confidence            77899999984 77  8888999888888765432   24555 556689999999887778999999986 77777777


Q ss_pred             ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259          80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA  159 (294)
Q Consensus        80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~  159 (294)
                      .++|+|+||+++++++||.|+|+                                                  |++++.+
T Consensus        94 ~~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------pg~~~~~  123 (333)
T 3ba1_A           94 FSVGLDKVDLIKCEEKGVRVTNT--------------------------------------------------PDVLTDD  123 (333)
T ss_dssp             SSSCCTTBCHHHHHHHTCEEECC--------------------------------------------------CSTTHHH
T ss_pred             cCccccccCHHHHHhCCcEEEEC--------------------------------------------------CCcchHH
Confidence            77777777776666555555555                                                  8899999


Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cC-------------
Q psy5259         160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------EL-------------  214 (294)
Q Consensus       160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~-------------  214 (294)
                      ||||+++++|++.|++..+.+.+++|.|...  ....|  ++++|+++||||+            .+             
T Consensus       124 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~--~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~  199 (333)
T 3ba1_A          124 VADLAIGLILAVLRRICECDKYVRRGAWKFG--DFKLT--TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKP  199 (333)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHTTGGGGC--CCCCC--CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCT
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc--ccccc--cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchh
Confidence            9999999999999999999999999999642  11345  8999999999999            11             


Q ss_pred             --CCc-ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         215 --GAQ-LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       215 --~~~-~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                        +.. ..++++++++||+|++|+|++++|+++|+++.|             ||.++|+++|.++|++|+++||+||||+
T Consensus       200 ~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          200 NTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             TCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             ccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence              122 358999999999999999999999999998776             9999999999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCCC
Q psy5259         279 PEPMPADHPLVQLDNC  294 (294)
Q Consensus       279 ~EP~~~~~~l~~~~nv  294 (294)
                      +||++. +||+++|||
T Consensus       280 ~EP~~~-~~L~~~~nv  294 (333)
T 3ba1_A          280 REPEVP-EKLFGLENV  294 (333)
T ss_dssp             TTTCCC-GGGGGCTTE
T ss_pred             CCCCCc-chhhcCCCE
Confidence            999876 999999996

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.6e-43  Score=332.20  Aligned_cols=233  Identities=24%  Similarity=0.391  Sum_probs=188.2

Q ss_pred             CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEe
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVIST   79 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~   79 (294)
                      ||+||..+. ..  ....+.|++ .+++..++..  ..+.+++.+.++++|+++++.  ..++++++|+.+ |+||+|++
T Consensus        17 ~~~vl~~d~-~~--~~~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~-~~Lk~I~~   90 (364)
T 2j6i_A           17 EEKLYGCTE-NK--LGIANWLKDQGHELITTSDK--EGGNSVLDQHIPDADIIITTPFHPAYITKERIDKA-KKLKLVVV   90 (364)
T ss_dssp             CTTCTTBTT-TG--GGCHHHHHHTTCEEEEESCC--SSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHC-TTCCEEEE
T ss_pred             CceEEEecC-cc--HHHHHHHHhCCCEEEEcCCC--CCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhC-CCCeEEEE
Confidence            456666553 33  445566666 5788776543  235678899999999999864  246899999986 77777777


Q ss_pred             ccccCcccChhhHhhC--CcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCch
Q psy5259          80 FSVGHDHLHLDQIKSR--GIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS  157 (294)
Q Consensus        80 ~~~G~d~id~~~~~~~--gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~  157 (294)
                      .++|+|+||++.++++  ||.|+|+                                                  |++++
T Consensus        91 ~~~G~d~id~~~~~~~~~gI~V~n~--------------------------------------------------pg~~~  120 (364)
T 2j6i_A           91 AGVGSDHIDLDYINQTGKKISVLEV--------------------------------------------------TGSNV  120 (364)
T ss_dssp             SSSCCTTBCHHHHHHHTCCCEEEEC--------------------------------------------------TTSSH
T ss_pred             CCcccccccHHHHHhcCCCEEEEEC--------------------------------------------------CCcCc
Confidence            7777777777766655  5555554                                                  88999


Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCCC---------
Q psy5259         158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELGA---------  216 (294)
Q Consensus       158 ~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~~---------  216 (294)
                      .+||||+++++|++.|++..+++.+++|.|..... ...+  ++++|+|+||||+            .++.         
T Consensus       121 ~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~--~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~  197 (364)
T 2j6i_A          121 VSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI-AKDA--YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ  197 (364)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHH-HTTC--CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcc-cCCc--ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            99999999999999999999999999999963211 1235  8999999999999            2222         


Q ss_pred             ------------cc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCce
Q psy5259         217 ------------QL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIG  270 (294)
Q Consensus       217 ------------~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~  270 (294)
                                  .. .++++++++||+|++|+|+|++|+++|+++.|             ||++||++||+++|++|+|+
T Consensus       198 ~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~  277 (364)
T 2j6i_A          198 ALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLR  277 (364)
T ss_dssp             CCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             ccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCc
Confidence                        12 37999999999999999999999999998877             99999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCCcCC--C---CC
Q psy5259         271 GAGLDVMIPEPMPADHPLVQL--D---NC  294 (294)
Q Consensus       271 ga~LDV~~~EP~~~~~~l~~~--~---nv  294 (294)
                      ||+||||++||+|.++|||++  |   ||
T Consensus       278 gA~LDVf~~EP~~~~~pL~~~~~~~~~nv  306 (364)
T 2j6i_A          278 GYGGDVWFPQPAPKDHPWRDMRNKYGAGN  306 (364)
T ss_dssp             EEEESCCSSSSCCTTCHHHHCCCTTSCCE
T ss_pred             EEEEecCCCCCCCCCChHHhccCCccCcE
Confidence            999999999999999999999  9   86

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=2.7e-43  Score=327.18  Aligned_cols=230  Identities=22%  Similarity=0.253  Sum_probs=184.7

Q ss_pred             CeEEEecCCCCCCchhHHHhhcc---ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC--ceEEE
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDM---FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN--LKVIS   78 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~---~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~--lk~i~   78 (294)
                      |||+++.+ .+..++.++.|.+.   +++..++..    ..+++.+.++++|++++++..++++++|+++ |+  ||+|+
T Consensus         2 mkil~~~~-~~~~~~~~~~l~~~~p~~~v~~~~~~----~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~   75 (333)
T 1j4a_A            2 TKIFAYAI-REDEKPFLKEWEDAHKDVEVEYTDKL----LTPETVALAKGADGVVVYQQLDYIAETLQAL-ADNGITKMS   75 (333)
T ss_dssp             CEEEECSC-CGGGHHHHHHHHHTCTTSEEEECSSC----CCTTTGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEE
T ss_pred             cEEEEEec-CccCHHHHHHHHhhCCCcEEEECCCC----CcHHHHHHhcCCcEEEEcCCCCCCHHHHHhc-cccCCeEEE
Confidence            68888753 33224566777653   477665442    2346777889999999886679999999987 44  77777


Q ss_pred             eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchH
Q psy5259          79 TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSD  158 (294)
Q Consensus        79 ~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~  158 (294)
                      +.++|+|+||+++++++||.|+|+                                                  |++++.
T Consensus        76 ~~~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------p~~~~~  105 (333)
T 1j4a_A           76 LRNVGVDNIDMAKAKELGFQITNV--------------------------------------------------PVYSPN  105 (333)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CCSCHH
T ss_pred             ECCcccccccHHHHHhCCCEEEeC--------------------------------------------------CCCCch
Confidence            777777777666666555555555                                                  889999


Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cC------------
Q psy5259         159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------EL------------  214 (294)
Q Consensus       159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~------------  214 (294)
                      +||||+++++|++.|++..+++.+++|.|.. ..  ..|  ++++|+|+||||+            .+            
T Consensus       106 ~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~-~~--~~~--~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~  180 (333)
T 1j4a_A          106 AIAEHAAIQAARILRQDKAMDEKVARHDLRW-AP--TIG--REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN  180 (333)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHTTBCCC-TT--CCB--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcc-CC--ccc--ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            9999999999999999999999999999952 21  345  8999999999999            11            


Q ss_pred             -----CCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEee
Q psy5259         215 -----GAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLD  275 (294)
Q Consensus       215 -----~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LD  275 (294)
                           ..++. ++++++++||+|++|+|++++|+++|+++.|             ||++||++||++||++|+|+||+||
T Consensus       181 ~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LD  260 (333)
T 1j4a_A          181 PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMD  260 (333)
T ss_dssp             HHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEES
T ss_pred             hhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEe
Confidence                 12344 8999999999999999999999999998877             9999999999999999999999999


Q ss_pred             CCCCCC--CCCCC-----------CCcCCCCC
Q psy5259         276 VMIPEP--MPADH-----------PLVQLDNC  294 (294)
Q Consensus       276 V~~~EP--~~~~~-----------~l~~~~nv  294 (294)
                      ||++||  +|+++           |||++|||
T Consensus       261 V~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nv  292 (333)
T 1j4a_A          261 VYEGEVGIFNEDWEGKEFPDARLADLIARPNV  292 (333)
T ss_dssp             CCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTE
T ss_pred             cCCCCCCccccccccccCCccchhhHHhCCCE
Confidence            999999  45544           69999996

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=7.6e-43  Score=329.56  Aligned_cols=218  Identities=24%  Similarity=0.435  Sum_probs=180.1

Q ss_pred             HHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCc
Q psy5259          21 DILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGI   97 (294)
Q Consensus        21 ~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI   97 (294)
                      +.|++ +++++.....  ..+.+++.+.++++|++++..  ..++++++|+++ |+||+|++.++|+|+||+++++++||
T Consensus        61 ~~l~~~g~~v~~~~~~--~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~iD~~aa~~~gI  137 (393)
T 2nac_A           61 KYLESNGHTLVVTSDK--DGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNV  137 (393)
T ss_dssp             HHHHHTTCEEEEESCC--SSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHhCCCEEEEecCC--CCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHhcCCE
Confidence            45665 4677654332  234568889999999999863  347999999986 77877777777777777776666666


Q ss_pred             EEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchh
Q psy5259          98 RVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ  177 (294)
Q Consensus        98 ~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~  177 (294)
                      .|+|+                                                  +++++.+||||+++++|++.|++..
T Consensus       138 ~V~n~--------------------------------------------------~g~~~~~VAE~al~liL~~~R~~~~  167 (393)
T 2nac_A          138 TVAEV--------------------------------------------------TYCNSISVAEHVVMMILSLVRNYLP  167 (393)
T ss_dssp             EEEEC--------------------------------------------------TTTTHHHHHHHHHHHHHHHHTTHHH
T ss_pred             EEEeC--------------------------------------------------CCcccHHHHHHHHHHHHHHHhccHH
Confidence            55555                                                  8889999999999999999999999


Q ss_pred             hhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------------cCCCcc-cCHHHH
Q psy5259         178 GHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------------ELGAQL-VPLDTL  224 (294)
Q Consensus       178 ~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------------------~~~~~~-~~l~el  224 (294)
                      +++.+++|.|..... ...+  .+++|||+||||+                                ..+... .+++++
T Consensus       168 ~~~~~~~g~W~~~~~-~~~~--~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~el  244 (393)
T 2nac_A          168 SHEWARKGGWNIADC-VSHA--YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDM  244 (393)
T ss_dssp             HHHHHHTTCCCHHHH-HTTC--CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHH
T ss_pred             HHHHHHcCCCCcccc-ccCC--ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHH
Confidence            999999999964211 1234  7999999999999                                112333 479999


Q ss_pred             hccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCC
Q psy5259         225 CAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL  291 (294)
Q Consensus       225 l~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~  291 (294)
                      +++||+|++|+|+|++|+++|+++.|             ||++||++||+++|++|+|+||+||||++||+++++|||++
T Consensus       245 l~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~  324 (393)
T 2nac_A          245 YPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM  324 (393)
T ss_dssp             GGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTS
T ss_pred             HhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcC
Confidence            99999999999999999999998877             99999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy5259         292 DNC  294 (294)
Q Consensus       292 ~nv  294 (294)
                      |||
T Consensus       325 ~nv  327 (393)
T 2nac_A          325 PYN  327 (393)
T ss_dssp             TTB
T ss_pred             CCE
Confidence            996

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.3e-42  Score=322.23  Aligned_cols=232  Identities=26%  Similarity=0.343  Sum_probs=185.9

Q ss_pred             CeEEEecCCCCCCchhHHHhhcc--ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC--ceEEEe
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDM--FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN--LKVIST   79 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~--~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~--lk~i~~   79 (294)
                      |||+++.. .+..++.++.|.+.  +++..++.   ..+.+++.+.++++|++++++..++++++|+++ |+  ||+|++
T Consensus         1 mki~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~   75 (331)
T 1xdw_A            1 MKVLCYGV-RDVELPIFEACNKEFGYDIKCVPD---YLNTKETAEMAAGFDAVILRGNCFANKQNLDIY-KKLGVKYILT   75 (331)
T ss_dssp             CEEEECSC-CTTTHHHHHHHGGGTCCEEEECSC---CSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHH-HHHTCCEEEE
T ss_pred             CEEEEEec-CccCHHHHHHHHHhcCeEEEECCC---CCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhC-cccCceEEEE
Confidence            47888652 33225667777653  45655443   245588888999999999987779999999987 55  777777


Q ss_pred             ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259          80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA  159 (294)
Q Consensus        80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~  159 (294)
                      .++|+|+||++.++++||.|+|+                                                  |++++.+
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~  105 (331)
T 1xdw_A           76 RTAGTDHIDKEYAKELGFPMAFV--------------------------------------------------PRYSPNA  105 (331)
T ss_dssp             SSSCCTTBCHHHHHHTTCCEECC--------------------------------------------------CCCCHHH
T ss_pred             ccccccccCHHHHHhCCcEEEeC--------------------------------------------------CCCCcHH
Confidence            77777766666666555555555                                                  8899999


Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc---------------------cC----
Q psy5259         160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---------------------EL----  214 (294)
Q Consensus       160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~---------------------~~----  214 (294)
                      ||||+++++|++.|++..+.+.+++|.|.... . ..|  +++.|+|+||||+                     +.    
T Consensus       106 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~-~~~--~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  181 (331)
T 1xdw_A          106 IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDA-F-MFS--KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIK  181 (331)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCS-T-TCC--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHcCCCcccc-C-cCc--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccH
Confidence            99999999999999999999999999995211 1 345  8999999999999                     10    


Q ss_pred             ----CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         215 ----GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       215 ----~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                          ...+.++++++++||+|++|+|+|++|+++|+++.|             ||++||++||+++|++|+|+||+||||
T Consensus       182 ~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~  261 (331)
T 1xdw_A          182 GIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVL  261 (331)
T ss_dssp             SCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             HHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecC
Confidence                123458999999999999999999999999998887             999999999999999999999999999


Q ss_pred             CCCCC--CCC-------C----CCcCC-CCC
Q psy5259         278 IPEPM--PAD-------H----PLVQL-DNC  294 (294)
Q Consensus       278 ~~EP~--~~~-------~----~l~~~-~nv  294 (294)
                      ++||+  +++       +    |||++ |||
T Consensus       262 ~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nv  292 (331)
T 1xdw_A          262 DGEASVFGKDLEGQKLENPLFEKLVDLYPRV  292 (331)
T ss_dssp             TTGGGTTTCCCTTSCCSSHHHHHHHHTTTTE
T ss_pred             CCCCCcccccccccccCccchHHHHhCCCCE
Confidence            99994  333       3    79999 996

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.2e-42  Score=322.73  Aligned_cols=231  Identities=22%  Similarity=0.297  Sum_probs=183.4

Q ss_pred             CeEEEecCCCCCCchhHHHhhc--cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCC--ceEEEe
Q psy5259           4 PKLLLTRNDYPRVSPAYDILED--MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGEN--LKVIST   79 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~--~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~--lk~i~~   79 (294)
                      |||+++.. .+..++.++.|.+  .+++..++..    ..+++.+.++++|++++++..++++++|+.+ |+  ||+|++
T Consensus         1 Mkil~~~~-~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~   74 (333)
T 1dxy_A            1 MKIIAYGA-RVDEIQYFKQWAKDTGNTLEYHTEF----LDENTVEWAKGFDGINSLQTTPYAAGVFEKM-HAYGIKFLTI   74 (333)
T ss_dssp             CEEEECSC-CTTTHHHHHHHHHHHCCEEEECSSC----CCTTGGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEE
T ss_pred             CEEEEEec-cccCHHHHHHHHHhCCeEEEEcCCC----ChHHHHHHhcCCeEEEEcCCCCCCHHHHHhC-cccCceEEEE
Confidence            47888652 2322556677755  4566655442    2346777899999999987779999999987 44  777777


Q ss_pred             ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259          80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA  159 (294)
Q Consensus        80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~  159 (294)
                      .++|+|+||++.++++||.|+|+                                                  |++++.+
T Consensus        75 ~~~G~d~id~~~~~~~gI~v~n~--------------------------------------------------p~~~~~~  104 (333)
T 1dxy_A           75 RNVGTDNIDMTAMKQYGIRLSNV--------------------------------------------------PAYSPAA  104 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------TTSCHHH
T ss_pred             cCcccCccCHHHHHhCCCEEEeC--------------------------------------------------CCCCchH
Confidence            77777777666666555555555                                                  8899999


Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cC-------------
Q psy5259         160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------EL-------------  214 (294)
Q Consensus       160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~-------------  214 (294)
                      ||||+++++|++.|++..+++.+++|.|.....  ..|  ++++|+|+||||+            .+             
T Consensus       105 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~--~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  180 (333)
T 1dxy_A          105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT--FIG--KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK  180 (333)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC--CCC--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHcCCcccccC--CCc--cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            999999999999999999999999999842011  345  8999999999999            01             


Q ss_pred             ----CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         215 ----GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       215 ----~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                          ...+.++++++++||+|++|+|+|++|+++||++.|             ||++||++||+++|++|+|+||+||||
T Consensus       181 ~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~  260 (333)
T 1dxy_A          181 GDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY  260 (333)
T ss_dssp             SCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSC
T ss_pred             hhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecC
Confidence                123458999999999999999999999999998887             999999999999999999999999999


Q ss_pred             CCCCC--C--------CC---CCCcCCCCC
Q psy5259         278 IPEPM--P--------AD---HPLVQLDNC  294 (294)
Q Consensus       278 ~~EP~--~--------~~---~~l~~~~nv  294 (294)
                      ++||+  +        ++   +|||++|||
T Consensus       261 ~~EP~~~~~~~~~~~~~~~~~~pL~~~~nv  290 (333)
T 1dxy_A          261 EYETEDLLNLAKHGSFKDPLWDELLGMPNV  290 (333)
T ss_dssp             TTHHHHHHHHHHHSSCCCHHHHHHHTCTTE
T ss_pred             CCCCCcccccccccccCccchhHHhcCCCE
Confidence            99993  2        12   589999996

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=2e-42  Score=318.67  Aligned_cols=222  Identities=18%  Similarity=0.234  Sum_probs=177.5

Q ss_pred             CCCeEEEecCCCCCCchhHHHhhcc---ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEE
Q psy5259           2 SKPKLLLTRNDYPRVSPAYDILEDM---FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVIS   78 (294)
Q Consensus         2 ~k~kvl~~~~~~~~~~~~~~~l~~~---~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~   78 (294)
                      ++|||+++.+ .+..++..+.|++.   .++..++.       +    ..+++|+++++.   .++++|+.  |+||+|+
T Consensus         2 ~~mkil~~~~-~~~~~~~~~~l~~~~p~~~~~~~~~-------~----~~~~ad~~i~~~---~~~~~l~~--~~Lk~I~   64 (315)
T 3pp8_A            2 NAMEIIFYHP-TFNAAWWVNALEKALPHARVREWKV-------G----DNNPADYALVWQ---PPVEMLAG--RRLKAVF   64 (315)
T ss_dssp             CCEEEEEECS-SSCHHHHHHHHHHHSTTEEEEECCT-------T----CCSCCSEEEESS---CCHHHHTT--CCCSEEE
T ss_pred             CceEEEEEcC-CCchHHHHHHHHHHCCCCEEEecCC-------C----CccCcEEEEECC---CCHHHhCC--CCceEEE
Confidence            3589999885 33224566777763   35544421       1    356999999873   47999986  8898888


Q ss_pred             eccccCccc-C-hhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCC-
Q psy5259          79 TFSVGHDHL-H-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV-  155 (294)
Q Consensus        79 ~~~~G~d~i-d-~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~-  155 (294)
                      +.++|+|+| | +++.                                               ..+.++||.|+|++++ 
T Consensus        65 ~~~aG~d~i~d~~~a~-----------------------------------------------~~~~~~gi~v~~~~~~~   97 (315)
T 3pp8_A           65 VLGAGVDAILSKLNAH-----------------------------------------------PEMLDASIPLFRLEDTG   97 (315)
T ss_dssp             ESSSCCHHHHHHHHHC-----------------------------------------------TTSSCTTSCEEEC--CC
T ss_pred             ECCEecccccchhhhh-----------------------------------------------hhhhcCCCEEEEcCCCC
Confidence            888888888 6 6650                                               0123445555555654 


Q ss_pred             chHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC--------
Q psy5259         156 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG--------  215 (294)
Q Consensus       156 ~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~--------  215 (294)
                      ++.+||||+++++|++.|++..+.+.+++|.|...     .+  ++++|||+||||+            .+|        
T Consensus        98 ~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~--~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr  170 (315)
T 3pp8_A           98 MGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PE--YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSR  170 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CC--CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             ccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CC--CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcC
Confidence            48999999999999999999999999999999752     34  8999999999999            111        


Q ss_pred             -------Cc----ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceE
Q psy5259         216 -------AQ----LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGG  271 (294)
Q Consensus       216 -------~~----~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~g  271 (294)
                             ..    ..++++++++||+|++|+|+|++|+|+||++.|             ||++||++||++||++|+|+|
T Consensus       171 ~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~g  250 (315)
T 3pp8_A          171 SRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKG  250 (315)
T ss_dssp             SCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEE
T ss_pred             CchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccE
Confidence                   11    147999999999999999999999999999988             999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         272 AGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       272 a~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      |+||||++||+|+++|||++|||
T Consensus       251 A~lDV~~~EPl~~~~pL~~~~nv  273 (315)
T 3pp8_A          251 AMLDVFSQEPLPQESPLWRHPRV  273 (315)
T ss_dssp             EEESCCSSSSCCTTCGGGGCTTE
T ss_pred             EEcCCCCCCCCCCCChhhcCCCE
Confidence            99999999999999999999996

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=7.3e-42  Score=318.80  Aligned_cols=236  Identities=25%  Similarity=0.376  Sum_probs=191.3

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHc-cCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKL-KGCSALLCNPHQKVDKEALDESGENLKVIST   79 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l-~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~   79 (294)
                      |+||+|++.+. .. .+..++.+++.+++..++.    .+.+++.+.+ .++|+++++...++++++|+.+ |+||+|++
T Consensus        19 ~~kp~i~~l~~-~~-~~~~~~~l~~~~~~~~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Lk~I~~   91 (347)
T 1mx3_A           19 SHMPLVALLDG-RD-CTVEMPILKDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVR   91 (347)
T ss_dssp             --CCEEEESSC-SC-CTTTHHHHTTTCEEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEE
T ss_pred             CCCCEEEEEcC-Cc-chhhHHHhhccceEEecCC----CCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhC-CCCCEEEE
Confidence            46899999874 22 2345888888888887753    4566777665 7888888776778999999986 77888888


Q ss_pred             ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259          80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA  159 (294)
Q Consensus        80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~  159 (294)
                      .++|+|+||+++++++||.|+|+                                                  |++++.+
T Consensus        92 ~~~G~d~id~~~~~~~gI~V~n~--------------------------------------------------~~~~~~~  121 (347)
T 1mx3_A           92 IGSGFDNIDIKSAGDLGIAVCNV--------------------------------------------------PAASVEE  121 (347)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSTTHHH
T ss_pred             cccccCcccHHHHHhCCceEEEC--------------------------------------------------CCCCHHH
Confidence            87777777777777666666665                                                  8889999


Q ss_pred             HHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccc---ccccccCcCCCEEEEEcc------------c-----------
Q psy5259         160 VAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQT---VISDIIGLNGSTVGIVGT------------E-----------  213 (294)
Q Consensus       160 VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~---~~g~~~~l~gktvgIiG~------------~-----------  213 (294)
                      ||||+++++|++.|++..+.+.+++|.|.......   ..| ..+++|+|+||||+            .           
T Consensus       122 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~-~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~  200 (347)
T 1mx3_A          122 TADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASG-AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY  200 (347)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTT-CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccC-ccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCC
Confidence            99999999999999999999999999995321100   111 16899999999999            1           


Q ss_pred             --------CCCcc-cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceE
Q psy5259         214 --------LGAQL-VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGG  271 (294)
Q Consensus       214 --------~~~~~-~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~g  271 (294)
                              .+++. .++++++++||+|++|+|++++|+++|+++.|             ||+++|+++|.++|++|+|+|
T Consensus       201 ~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~g  280 (347)
T 1mx3_A          201 LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRG  280 (347)
T ss_dssp             SCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEE
T ss_pred             cchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcE
Confidence                    12233 37999999999999999999999999998877             999999999999999999999


Q ss_pred             EEeeCCCCCCCC-CCCCCcCCCCC
Q psy5259         272 AGLDVMIPEPMP-ADHPLVQLDNC  294 (294)
Q Consensus       272 a~LDV~~~EP~~-~~~~l~~~~nv  294 (294)
                      |+||||+.||++ .++||+.+|||
T Consensus       281 A~lDV~~~EP~~~~~~~L~~~~nv  304 (347)
T 1mx3_A          281 AALDVHESEPFSFSQGPLKDAPNL  304 (347)
T ss_dssp             EEESCCSSSSCCTTSSTTTTCSSE
T ss_pred             EEEeecccCCCCCCCchHHhCCCE
Confidence            999999999987 47899999996

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=5.7e-42  Score=320.05  Aligned_cols=237  Identities=24%  Similarity=0.386  Sum_probs=194.8

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHcc-----CCcEEEeC------CCCCCCHHHHhh
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLK-----GCSALLCN------PHQKVDKEALDE   69 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~-----~~d~~~~~------~~~~~~~~~l~~   69 (294)
                      |+|||||++++.++..+..++.|++.++++.++.    .+.+++++.++     ++|+++++      ...++++++|+.
T Consensus         1 m~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~   76 (348)
T 2w2k_A            1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPANL----TTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISH   76 (348)
T ss_dssp             -CCCEEEECSSCCSSCHHHHHHHHHHSEEEECCC----CCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTT
T ss_pred             CCCcEEEEECCccccChHHHHHHHhcceEEecCC----CCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHh
Confidence            7889999998425433567888888888877643    57899999988     89998864      245899999998


Q ss_pred             cCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEE
Q psy5259          70 SGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus        70 ~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      ++++||+|++.++|+|+||++.++++||.|+|+                                               
T Consensus        77 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~-----------------------------------------------  109 (348)
T 2w2k_A           77 LPSSLKVFAAAGAGFDWLDLDALNERGVAFANS-----------------------------------------------  109 (348)
T ss_dssp             SCTTCCEEEESSSCCTTBCHHHHHHTTCEEECC-----------------------------------------------
T ss_pred             cccCceEEEECCccccccCHHHHHhCCcEEEEC-----------------------------------------------
Confidence            744688888888888887777777666666666                                               


Q ss_pred             EeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCC---CCcccc-ccccccccCcCCCEEEEEcc-----------c-
Q psy5259         150 GTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGE---WALKQT-QTVISDIIGLNGSTVGIVGT-----------E-  213 (294)
Q Consensus       150 ~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~---w~~~~~-~~~~g~~~~l~gktvgIiG~-----------~-  213 (294)
                         |++++.+||||+++++|++.|++..+++.+++|.   |..... ....|  .+++|+|+||||+           . 
T Consensus       110 ---p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~--~~l~g~~vgIIG~G~IG~~vA~~l~~  184 (348)
T 2w2k_A          110 ---RGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA--HNPRGHVLGAVGLGAIQKEIARKAVH  184 (348)
T ss_dssp             ---TTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC--CCSTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC--cCCCCCEEEEEEECHHHHHHHHHHHH
Confidence               8889999999999999999999999999999999   942110 11245  8999999999999           1 


Q ss_pred             ---------------------CCCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHH
Q psy5259         214 ---------------------LGAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQE  258 (294)
Q Consensus       214 ---------------------~~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~  258 (294)
                                           .+..+. ++++++++||+|++|+|++++|+++|+++.|             ||+++|++
T Consensus       185 ~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~  264 (348)
T 2w2k_A          185 GLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD  264 (348)
T ss_dssp             TTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             hcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHH
Confidence                                 123334 7999999999999999999999999998766             99999999


Q ss_pred             HHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         259 ALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       259 aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      +|.++|++|+|+||++|||++|| +.++||+++|||
T Consensus       265 aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nv  299 (348)
T 2w2k_A          265 ALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV  299 (348)
T ss_dssp             HHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSE
T ss_pred             HHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCE
Confidence            99999999999999999999999 667899999996

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.2e-41  Score=316.26  Aligned_cols=234  Identities=34%  Similarity=0.632  Sum_probs=196.5

Q ss_pred             CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      |+||+++.+ ++  +..++.|++.+++..+.... ..+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++
T Consensus         2 ~~~il~~~~-~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~   76 (334)
T 2dbq_A            2 KPKVFITRE-IP--EVGIKMLEDEFEVEVWGDEK-EIPREILLKKVKEVDALVTMLSERIDKEVFENA-PKLRIVANYAV   76 (334)
T ss_dssp             CCEEEESSC-CC--HHHHHHHHTTSEEEECCCSS-CCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTC-TTCCEEEESSS
T ss_pred             CcEEEEecC-CC--HHHHHHHHhcCCEEEecCCC-CCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhC-CCceEEEECCc
Confidence            579999874 77  78888898888887655421 357889999999999999887678999999986 77877777777


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|+||++.++++||.|+|+                                                  |++++.+|||
T Consensus        77 G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~~~~vAE  106 (334)
T 2dbq_A           77 GYDNIDIEEATKRGIYVTNT--------------------------------------------------PDVLTDATAD  106 (334)
T ss_dssp             CCTTBCHHHHHHTTCEEECC--------------------------------------------------CSTTHHHHHH
T ss_pred             ccccccHHHHHhCCCEEEeC--------------------------------------------------CCcCHHHHHH
Confidence            77777777766666666555                                                  8899999999


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCC----ccccccccccccCcCCCEEEEEcc--------------------------
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWA----LKQTQTVISDIIGLNGSTVGIVGT--------------------------  212 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~----~~~~~~~~g~~~~l~gktvgIiG~--------------------------  212 (294)
                      |+++++|++.|++..+.+.+++|.|.    .+......|  .++.|+++||||+                          
T Consensus       107 ~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          107 LAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLG--YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCC--CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             HHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccc--cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            99999999999999999999999995    222222235  7999999999999                          


Q ss_pred             -----cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259         213 -----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL  274 (294)
Q Consensus       213 -----~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~L  274 (294)
                           ..+....++++++++||+|++|+|.+++|+++++++.|             ||.++|+++|.++|++|+|+||++
T Consensus       185 ~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~l  264 (334)
T 2dbq_A          185 EEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGL  264 (334)
T ss_dssp             HHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEE
T ss_pred             hhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEe
Confidence                 11234458999999999999999999999999997655             999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcCCCCC
Q psy5259         275 DVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       275 DV~~~EP~~~~~~l~~~~nv  294 (294)
                      |||++|| ++++||+++|||
T Consensus       265 Dv~~~EP-~~~~~L~~~~~v  283 (334)
T 2dbq_A          265 DVFEEEP-YYNEELFKLDNV  283 (334)
T ss_dssp             SCCSSSS-CCCHHHHHCTTE
T ss_pred             cCCCCCC-CCCchhhcCCCE
Confidence            9999999 778999999996

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.1e-40  Score=327.08  Aligned_cols=230  Identities=30%  Similarity=0.484  Sum_probs=196.4

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      |+|||||++++ ++  +...+.|++.+++..++.    .+.+++.+.++++|++++++.+++++++|+.+ |+||+|++.
T Consensus         2 m~~~~vl~~~~-~~--~~~~~~l~~~~~v~~~~~----~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~i~~~   73 (529)
T 1ygy_A            2 VSLPVVLIADK-LA--PSTVAALGDQVEVRWVDG----PDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARA   73 (529)
T ss_dssp             -CCCEEEECSS-CC--GGGGTTSCSSSEEEECCT----TSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEES
T ss_pred             CCCcEEEEeCC-CC--HHHHHHHhcCceEEEcCC----CCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCcEEEEC
Confidence            56899999984 77  777888887788876543    57889999999999999987789999999986 777777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++|+|++|+++++++||.|+|+                                                  |++++.+|
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~--------------------------------------------------p~~~~~~v  103 (529)
T 1ygy_A           74 GVGLDNVDVDAATARGVLVVNA--------------------------------------------------PTSNIHSA  103 (529)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECC--------------------------------------------------TTSSHHHH
T ss_pred             CcCcCccCHhHHHhCCeEEEEC--------------------------------------------------CCcchHHH
Confidence            7777777777666666555555                                                  88999999


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------  212 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------  212 (294)
                      |||+++++|++.|++.++++.+++|.|.+..   ..|  .+++|+|+||||+                            
T Consensus       104 AE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~---~~~--~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~  178 (529)
T 1ygy_A          104 AEHALALLLAASRQIPAADASLREHTWKRSS---FSG--TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA  178 (529)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG---CCB--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhCCCcccC---cCc--cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChh
Confidence            9999999999999999999999999997532   345  8999999999999                            


Q ss_pred             ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                         ..++...++++++++||+|++|+|++++|+++|+++.|             ||.++|+++|.++|++|+|+||++||
T Consensus       179 ~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv  258 (529)
T 1ygy_A          179 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV  258 (529)
T ss_dssp             HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred             HHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEee
Confidence               12334458999999999999999999999999998665             99999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCCCCC
Q psy5259         277 MIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       277 ~~~EP~~~~~~l~~~~nv  294 (294)
                      |+.||+ +++|||++|||
T Consensus       259 ~~~eP~-~~~~L~~~~~v  275 (529)
T 1ygy_A          259 FATEPC-TDSPLFELAQV  275 (529)
T ss_dssp             CSSSSC-SCCGGGGCTTE
T ss_pred             ccCCCC-CCchHHhCCCE
Confidence            999996 57999999985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.9e-41  Score=310.60  Aligned_cols=232  Identities=31%  Similarity=0.504  Sum_probs=193.9

Q ss_pred             CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      |+||+++. .++  ++.++.|++.+++..++ .   .+.+++.+.++++|+++++...++++++|+.+ |+||+|++.++
T Consensus         2 ~~~il~~~-~~~--~~~~~~l~~~~~~~~~~-~---~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~   73 (333)
T 2d0i_A            2 RPKVGVLL-KMK--REALEELKKYADVEIIL-Y---PSGEELKGVIGRFDGIIVSPTTKITREVLENA-ERLKVISCHSA   73 (333)
T ss_dssp             CSEEEECS-CCC--HHHHHHHHTTSEEEECC-S---CCHHHHHHHGGGCSEEEECTTSCBCHHHHTTC-TTCCEEEESSS
T ss_pred             CcEEEEEC-CCC--HHHHHHHHhcCCEEEeC-C---CCHHHHHHHhcCCEEEEECCCCCCCHHHHhhC-CCceEEEECCc
Confidence            68999998 477  88889998878877654 1   57889999999999999776678999999986 77888887777


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|++|+++++++||.|+|+                                                  |++++.+|||
T Consensus        74 G~d~id~~~~~~~gi~v~n~--------------------------------------------------~~~~~~~vAE  103 (333)
T 2d0i_A           74 GYDNIDLEEATKRGIYVTKV--------------------------------------------------SGLLSEAVAE  103 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECC--------------------------------------------------CHHHHHHHHH
T ss_pred             ccccccHHHHHhCCcEEEeC--------------------------------------------------CCcChHHHHH
Confidence            77777777776666666555                                                  8899999999


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCCccccccccc--cccCcCCCEEEEEcc----------------------------
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVIS--DIIGLNGSTVGIVGT----------------------------  212 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g--~~~~l~gktvgIiG~----------------------------  212 (294)
                      |+++++|++.|++..+++.+++|.|..+... ..|  ..++++|+++||||+                            
T Consensus       104 ~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~  182 (333)
T 2d0i_A          104 FTVGLIINLMRKIHYADKFIRRGEWESHAKI-WTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVN  182 (333)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHTTCCCCHHHH-HTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHcCCCCcCccc-ccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh
Confidence            9999999999999999999999999642110 111  015899999999999                            


Q ss_pred             ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                         ..+....++++++++||+|++|+|.+++|+++|+++.|            ||.++|+++|.++|++|+|+||++|||
T Consensus       183 ~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~gilin~srg~~vd~~aL~~aL~~~~i~gaglDv~  262 (333)
T 2d0i_A          183 VEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVF  262 (333)
T ss_dssp             HHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHTTCBCEEEESCC
T ss_pred             hhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEecCC
Confidence               11233458999999999999999999999999986433            999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcCCC-CC
Q psy5259         278 IPEPMPADHPLVQLD-NC  294 (294)
Q Consensus       278 ~~EP~~~~~~l~~~~-nv  294 (294)
                      ++||++ ++||+++| ||
T Consensus       263 ~~EP~~-~~~L~~~~~nv  279 (333)
T 2d0i_A          263 EKEPVR-EHELFKYEWET  279 (333)
T ss_dssp             SSSSCS-CCGGGGCTTTE
T ss_pred             CCCCCC-CchHHcCCCCE
Confidence            999988 89999999 86

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=2.5e-39  Score=303.60  Aligned_cols=204  Identities=25%  Similarity=0.354  Sum_probs=168.0

Q ss_pred             CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      ||||++++ ++|   ...+.|++..+++.++..  ..+.+    .++++|++++++..++++++|+  .++||+|++.++
T Consensus         3 mmkIl~~~-~~p---~~~~~~~~~~~v~~~~~~--~~~~~----~l~~ad~li~~~~~~v~~~ll~--~~~Lk~I~~~~~   70 (381)
T 3oet_A            3 AMKILVDE-NMP---YARELFSRLGEVKAVPGR--PIPVE----ELNHADALMVRSVTKVNESLLS--GTPINFVGTATA   70 (381)
T ss_dssp             CCEEEEET-TST---THHHHHTTSSEEEEECC-----CHH----HHTTCSEEEECTTSCBSHHHHT--TSCCCEEEESSS
T ss_pred             ceEEEECC-CCc---HHHHHHhhCCcEEEeCCC--CCCHH----HHCCCEEEEECCCCCCCHHHHc--CCCCEEEEEccc
Confidence            68999998 476   356777777788876543  24444    5789999999877899999998  366988888888


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|+||++.++++||.|+|+                                                  ||+++.+|||
T Consensus        71 G~D~iD~~~~~~~gI~v~n~--------------------------------------------------pg~~~~~VAE  100 (381)
T 3oet_A           71 GTDHVDEAWLKQAGIGFSAA--------------------------------------------------PGCNAIAVVE  100 (381)
T ss_dssp             CCTTBCHHHHHHTTCEEECC--------------------------------------------------TTTTHHHHHH
T ss_pred             cccccCHHHHHhCCEEEEEC--------------------------------------------------CCcCcchhHH
Confidence            88888888888777777666                                                  7778888888


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------cC
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------EL  214 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------~~  214 (294)
                      |+++++|++.|+.                     |  ++++|||+||||+                            ..
T Consensus       101 ~~l~~lL~l~r~~---------------------g--~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~  157 (381)
T 3oet_A          101 YVFSALLMLAERD---------------------G--FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGD  157 (381)
T ss_dssp             HHHHHHHHHHHHT---------------------T--CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTC
T ss_pred             HHHHHHHHHHHhc---------------------C--CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhcc
Confidence            8888888887641                     3  6788899999998                            12


Q ss_pred             CCcccCHHHHhccCCEEEEecCCCcc----cccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC
Q psy5259         215 GAQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM  277 (294)
Q Consensus       215 ~~~~~~l~ell~~sDvV~l~~p~t~~----T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~  277 (294)
                      +..+.++++++++||+|++|+|+|++    |+|+||++.|             ||++||++||++||++|++.||+||||
T Consensus       158 ~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~  237 (381)
T 3oet_A          158 EGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVW  237 (381)
T ss_dssp             CSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCC
T ss_pred             CcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeecc
Confidence            34567899999999999999999999    9999999988             999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcCCC
Q psy5259         278 IPEPMPADHPLVQLD  292 (294)
Q Consensus       278 ~~EP~~~~~~l~~~~  292 (294)
                      ++||++. ++||.++
T Consensus       238 e~EP~~~-~~L~~~~  251 (381)
T 3oet_A          238 EGEPDLN-VALLEAV  251 (381)
T ss_dssp             TTTTSCC-HHHHHHS
T ss_pred             ccCCCCc-chhhhCC
Confidence            9999875 5677654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=7.2e-39  Score=293.69  Aligned_cols=213  Identities=23%  Similarity=0.293  Sum_probs=173.3

Q ss_pred             CeEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      ||||++.+ ++  ++..+.|++. +++.   .           +.++++|+++++.   .+.++|+++ |+||+|++.++
T Consensus         1 m~il~~~~-~~--~~~~~~l~~~~~~v~---~-----------~~~~~~d~~i~~~---~~~~~l~~~-~~Lk~I~~~~~   59 (303)
T 1qp8_A            1 MELYVNFE-LP--PEAEEELRKYFKIVR---G-----------GDLGNVEAALVSR---ITAEELAKM-PRLKFIQVVTA   59 (303)
T ss_dssp             CEEECCSC-CC--HHHHHHHHTTCEEEC---S-----------SCCTTBCCCCBSC---CCHHHHHHC-TTCCCEEBSSS
T ss_pred             CEEEEccC-CC--HHHHHHHHhcCCccc---h-----------hhhCCCEEEEECC---CCHHHHhhC-CCCcEEEECCc
Confidence            47899874 77  7888888774 4442   1           2578999988763   456888875 66666666666


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  162 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE  162 (294)
                      |+|+||++.+                                                   ++||.|+|+++.++.+|||
T Consensus        60 G~d~id~~~~---------------------------------------------------~~gi~v~~~~~~~~~~vAE   88 (303)
T 1qp8_A           60 GLDHLPWESI---------------------------------------------------PPHVTVAGNAGSNADAVAE   88 (303)
T ss_dssp             CCTTSCCTTS---------------------------------------------------CTTSCEECCCSSSHHHHHH
T ss_pred             CcccccHHHH---------------------------------------------------hcCCEEEECCCCCchHHHH
Confidence            6666655542                                                   3555666669999999999


Q ss_pred             HHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cCC---------------
Q psy5259         163 FNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------ELG---------------  215 (294)
Q Consensus       163 ~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~~---------------  215 (294)
                      |+++++|++.|++..+++.+++|.|...    ..+  ++++|+|+||||+            .++               
T Consensus        89 ~~~~~~L~~~R~~~~~~~~~~~g~w~~~----~~~--~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~~~~~  162 (303)
T 1qp8_A           89 FALALLLAPYKRIIQYGEKMKRGDYGRD----VEI--PLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPW  162 (303)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTTCCCCC----SCC--CCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred             HHHHHHHHHHhCHHHHHHHHHcCCCCCC----CCC--CCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCccccCc
Confidence            9999999999999999999999999642    122  6899999999999            111               


Q ss_pred             CcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCC-CCCC
Q psy5259         216 AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVM-IPEP  281 (294)
Q Consensus       216 ~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~-~~EP  281 (294)
                      ....++++++++||+|++|+|++++|+++|+++.|             ||.++|+++|.++|++|+|+||+|||| ++||
T Consensus       163 ~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep  242 (303)
T 1qp8_A          163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND  242 (303)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTC
T ss_pred             ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCC
Confidence            12357999999999999999999999999998777             999999999999999999999999999 8899


Q ss_pred             CCCCCCCcCCCCC
Q psy5259         282 MPADHPLVQLDNC  294 (294)
Q Consensus       282 ~~~~~~l~~~~nv  294 (294)
                      +++++|||++|||
T Consensus       243 ~~~~~~L~~~~nv  255 (303)
T 1qp8_A          243 FAKDAEFFSLPNV  255 (303)
T ss_dssp             CGGGHHHHTSTTE
T ss_pred             CCCCChhhcCCCE
Confidence            9989999999996

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=5.5e-37  Score=279.16  Aligned_cols=180  Identities=22%  Similarity=0.306  Sum_probs=147.8

Q ss_pred             HHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcc
Q psy5259          46 EKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLK  125 (294)
Q Consensus        46 ~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk  125 (294)
                      +.++++|+++++. .++      . .|+||+|++.++|+|+||++.+++                               
T Consensus        30 ~~~~~ad~li~~~-~~~------~-~~~Lk~I~~~~~G~d~id~~~~~~-------------------------------   70 (290)
T 3gvx_A           30 PDYYDAEAQVIKD-RYV------L-GKRTKMIQAISAGVDHIDVNGIPE-------------------------------   70 (290)
T ss_dssp             TSCCCCSEEEESS-CCC------C-CSSCCEEEECSSCCTTSCGGGSCT-------------------------------
T ss_pred             cchhhhhhhhhhh-hhh------h-hhhhHHHHHHhcCCceeecCCCcc-------------------------------
Confidence            3678899998842 232      2 466777766666666666665554                               


Q ss_pred             eEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCC
Q psy5259         126 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGS  205 (294)
Q Consensus       126 ~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gk  205 (294)
                                         +|+.++| ++.++.+||||+++++|++.|++..+.+.+++|.|.+.     ..  ++++||
T Consensus        71 -------------------~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-----~~--~~l~g~  123 (290)
T 3gvx_A           71 -------------------NVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQS-----PT--TLLYGK  123 (290)
T ss_dssp             -------------------TSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CC--CCCTTC
T ss_pred             -------------------ceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccC-----Cc--eeeecc
Confidence                               3333333 46788999999999999999999999999999999752     12  789999


Q ss_pred             EEEEEcc---------------------cC------CCccc-CHHHHhccCCEEEEecCCCcccccccccccc-------
Q psy5259         206 TVGIVGT---------------------EL------GAQLV-PLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------  250 (294)
Q Consensus       206 tvgIiG~---------------------~~------~~~~~-~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------  250 (294)
                      |+||||+                     +.      ..+.. ++++++++||+|++|+|+|++|+++|+++.|       
T Consensus       124 tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga  203 (290)
T 3gvx_A          124 ALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNL  203 (290)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTC
T ss_pred             hheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCc
Confidence            9999999                     10      12233 8999999999999999999999999999888       


Q ss_pred             ------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         251 ------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       251 ------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                            ||+++|++||+++|++|+|.||+||||++||+   +|||++|||
T Consensus       204 ilIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nv  250 (290)
T 3gvx_A          204 TIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNA  250 (290)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSE
T ss_pred             eEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc---cchhhhhhh
Confidence                  99999999999999999999999999999997   899999996

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.4e-36  Score=285.45  Aligned_cols=204  Identities=26%  Similarity=0.397  Sum_probs=163.6

Q ss_pred             CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG   83 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G   83 (294)
                      |||++++ ++|  . ..+.+++..++..++..  ..+.+    .++++|++++++..++++++|+ . |+||+|++.++|
T Consensus         1 mkil~~~-~~~--~-~~~~~~~~~~v~~~~~~--~~~~~----~l~~ad~li~~~~~~~~~~~l~-~-~~Lk~I~~~~~G   68 (380)
T 2o4c_A            1 MRILADE-NIP--V-VDAFFADQGSIRRLPGR--AIDRA----ALAEVDVLLVRSVTEVSRAALA-G-SPVRFVGTCTIG   68 (380)
T ss_dssp             CEEEEET-TCT--T-HHHHHGGGSEEEEECGG--GCSTT----TTTTCSEEEECTTSCBCHHHHT-T-SCCCEEEECSSC
T ss_pred             CEEEEec-Cch--H-HHHHHHhCCcEEEecCC--cCChH----HHCCcEEEEEcCCCCCCHHHhc-C-CCceEEEEcCcc
Confidence            4799987 466  3 45667766677665432  12333    4689999999877899999998 4 889999998888


Q ss_pred             CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHH
Q psy5259          84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEF  163 (294)
Q Consensus        84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~  163 (294)
                      +|+||++.++++||.|+|+                                                  ||+++.+||||
T Consensus        69 ~D~iD~~~~~~~gI~v~n~--------------------------------------------------pg~~~~~vAE~   98 (380)
T 2o4c_A           69 TDHLDLDYFAEAGIAWSSA--------------------------------------------------PGCNARGVVDY   98 (380)
T ss_dssp             STTBCHHHHHHHTCEEECC--------------------------------------------------TTTTHHHHHHH
T ss_pred             cchhhHHHHHhCCCEEEeC--------------------------------------------------CCcChHHHHHH
Confidence            8888888877777766666                                                  77777778888


Q ss_pred             HHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------cCC
Q psy5259         164 NIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------ELG  215 (294)
Q Consensus       164 al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------~~~  215 (294)
                      +++++|++.|+            |         |  .+++|+|+||||+                            ..+
T Consensus        99 ~l~~lL~l~r~------------~---------~--~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g  155 (380)
T 2o4c_A           99 VLGCLLAMAEV------------R---------G--ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPD  155 (380)
T ss_dssp             HHHHHHHHHHH------------H---------T--CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTT
T ss_pred             HHHHHHHHHhh------------h---------h--cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccC
Confidence            88888887765            1         2  5677888888888                            123


Q ss_pred             CcccCHHHHhccCCEEEEecCCCcc----cccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         216 AQLVPLDTLCAQSDFIFVTCALTKD----TEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       216 ~~~~~l~ell~~sDvV~l~~p~t~~----T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                      ..+.++++++++||+|++|+|++++    |+|+||++.|             ||++||++||+++|++|+|.+|+||||+
T Consensus       156 ~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~  235 (380)
T 2o4c_A          156 GEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWE  235 (380)
T ss_dssp             SCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred             cccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeec
Confidence            4567899999999999999999999    9999998887             9999999999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCCC
Q psy5259         279 PEPMPADHPLVQLDNC  294 (294)
Q Consensus       279 ~EP~~~~~~l~~~~nv  294 (294)
                      +||++ +++|+.+ ||
T Consensus       236 ~EP~~-~~~l~~~-nv  249 (380)
T 2o4c_A          236 GEPQA-DPELAAR-CL  249 (380)
T ss_dssp             TTTSC-CHHHHTT-CS
T ss_pred             cCCCC-chhhccC-CE
Confidence            99965 4677763 64

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.76  E-value=1.3e-19  Score=174.42  Aligned_cols=147  Identities=16%  Similarity=0.217  Sum_probs=126.8

Q ss_pred             cCcceEE-EeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccccc
Q psy5259         122 KNLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDII  200 (294)
Q Consensus       122 ~~Lk~i~-~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~  200 (294)
                      ++++.|. ..++|+|++  +++.++||.++|+++.++ +|||       ++.|++....+.++.| |.+     ..+  .
T Consensus       192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-----~~~--~  253 (479)
T 1v8b_A          192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-----ATD--F  253 (479)
T ss_dssp             TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-----HHC--C
T ss_pred             cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-----ccc--c
Confidence            7888888 779999988  889999999999999999 9999       3467887777777777 854     234  7


Q ss_pred             CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259         201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK  248 (294)
Q Consensus       201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~  248 (294)
                      ++.||++||+|+                                ..+++..++++++++||+|++|+    +|+++|+++
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~  329 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLE  329 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHH
Confidence            899999999999                                23455678999999999999994    899999998


Q ss_pred             cc-------------cCcC-CCHHHHHH--HHHcCCceEEEeeCCCCCCCCCCCCCcCC--CCC
Q psy5259         249 QF-------------RGGL-LDQEALVE--FLRDKKIGGAGLDVMIPEPMPADHPLVQL--DNC  294 (294)
Q Consensus       249 ~~-------------RG~l-vde~aL~~--aL~~g~i~ga~LDV~~~EP~~~~~~l~~~--~nv  294 (294)
                      .|             ||.+ ||+++|.+  ||++|+|+ +++|||   |+|+++|||.+  |||
T Consensus       330 ~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nv  389 (479)
T 1v8b_A          330 HLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRL  389 (479)
T ss_dssp             HHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSB
T ss_pred             HHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCE
Confidence            87             9999 99999999  99999998 899998   45568999988  885

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.72  E-value=7.8e-20  Score=176.48  Aligned_cols=146  Identities=13%  Similarity=0.169  Sum_probs=121.4

Q ss_pred             cCcceEE-EeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccccc
Q psy5259         122 KNLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDII  200 (294)
Q Consensus       122 ~~Lk~i~-~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~  200 (294)
                      ++++.+. ..++|+|++  +++.++||.++|+++.++ +|||+.       .|++......+..| |.+     ..|  .
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~-----~~g--~  273 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR-----ATD--V  273 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH-----HHC--C
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh-----ccc--c
Confidence            7888888 779999988  789999999999999999 999943       36665555555566 743     345  7


Q ss_pred             CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259         201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK  248 (294)
Q Consensus       201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~  248 (294)
                      ++.|||+||+|+                                ..+.+..++++++++||+|++|+    +|+++|+++
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI~~~  349 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVINHD  349 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSBCHH
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----CcccccCHH
Confidence            899999999999                                22455678999999999999997    799999998


Q ss_pred             cc-------------cCcC-CCHHHHHHHHHcCCceEEEeeCCCCCCCCCCCCCcCC--CCC
Q psy5259         249 QF-------------RGGL-LDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL--DNC  294 (294)
Q Consensus       249 ~~-------------RG~l-vde~aL~~aL~~g~i~ga~LDV~~~EP~~~~~~l~~~--~nv  294 (294)
                      .|             ||.+ ||+++| +||++|+|+ +++|   .||+|.++|||.+  |||
T Consensus       350 ~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~D---v~plp~~~pL~~l~~~nv  406 (494)
T 3d64_A          350 HMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVD---HIIFPDGKRVILLAEGRL  406 (494)
T ss_dssp             HHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEE---EEECTTSCEEEEEGGGSB
T ss_pred             HHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEE---EEECCCCCchhhcCCCCE
Confidence            88             9999 699999 999999997 4555   5587888999998  886

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.69  E-value=2.9e-17  Score=149.32  Aligned_cols=170  Identities=15%  Similarity=0.121  Sum_probs=115.0

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC------CCHHHHHHHccCCcEEEeC----------------
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR------MPRDIFIEKLKGCSALLCN----------------   57 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~------~~~e~~~~~l~~~d~~~~~----------------   57 (294)
                      |++|||++.+. -.......+.|.+ ++++.........      ...+++.+.++++|+++++                
T Consensus         3 ~~~m~i~v~~~-~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~   81 (293)
T 3d4o_A            3 LTGKHVVIIGG-DARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN   81 (293)
T ss_dssp             CTTCEEEEECB-CHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCS
T ss_pred             ccCcEEEEECC-CHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeeccccc
Confidence            67899999874 2211345567766 6888765432100      1235566678899999985                


Q ss_pred             CCCCCCHHHHhhcCCCceEEEeccccCcccCh-hhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccc
Q psy5259          58 PHQKVDKEALDESGENLKVISTFSVGHDHLHL-DQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDH  136 (294)
Q Consensus        58 ~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~-~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~  136 (294)
                      ...++++++|+.+ |++|+|+   +|+|++|+ +.++++||.|+|++..  +                            
T Consensus        82 ~~~~~~~~~l~~~-~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~--~----------------------------  127 (293)
T 3d4o_A           82 ESIVLTEEMIEKT-PNHCVVY---SGISNTYLNQCMKKTNRTLVKLMER--D----------------------------  127 (293)
T ss_dssp             CCCBCCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGC--H----------------------------
T ss_pred             CCccchHHHHHhC-CCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCC--c----------------------------
Confidence            2346889999876 6777765   56666665 5666666655555110  0                            


Q ss_pred             cccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----
Q psy5259         137 LHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----  212 (294)
Q Consensus       137 id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----  212 (294)
                                    .++++++.+|||+++++++..                        .|  .++.|+++||+|+    
T Consensus       128 --------------~~~~~~~~svae~a~~~~l~~------------------------~~--~~l~g~~v~IiG~G~iG  167 (293)
T 3d4o_A          128 --------------DIAIYNSIPTAEGTIMMAIQH------------------------TD--FTIHGANVAVLGLGRVG  167 (293)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHH------------------------CS--SCSTTCEEEEECCSHHH
T ss_pred             --------------eeeeeccHhHHHHHHHHHHHh------------------------cC--CCCCCCEEEEEeeCHHH
Confidence                          012678999999999998853                        13  6889999999999    


Q ss_pred             ----------------------------cCCCcc---cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         213 ----------------------------ELGAQL---VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       213 ----------------------------~~~~~~---~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                                                  +++.+.   .++++++++||+|++|+|+     ++++++.|
T Consensus       168 ~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l  231 (293)
T 3d4o_A          168 MSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVVTANVL  231 (293)
T ss_dssp             HHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHH
T ss_pred             HHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHhCHHHH
Confidence                                        123332   3688999999999999996     67776655

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.44  E-value=3.2e-14  Score=129.50  Aligned_cols=97  Identities=11%  Similarity=0.068  Sum_probs=53.3

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCCC------CHHHHHHHccCCcEEEeCC--------------C
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGRM------PRDIFIEKLKGCSALLCNP--------------H   59 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~~------~~e~~~~~l~~~d~~~~~~--------------~   59 (294)
                      |+.|||++.+. -+......+.|.+ ++++..........      ..+++.+.++++|+++.+.              .
T Consensus         5 ~~~mki~v~~~-~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~   83 (300)
T 2rir_A            5 LTGLKIAVIGG-DARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN   83 (300)
T ss_dssp             CCSCEEEEESB-CHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence            56789999874 2211345566766 67887653221010      1223456678999999731              1


Q ss_pred             CC--CCHHHHhhcCCCceEEEeccccCcccC-hhhHhhCCcEEeec
Q psy5259          60 QK--VDKEALDESGENLKVISTFSVGHDHLH-LDQIKSRGIRVGTV  102 (294)
Q Consensus        60 ~~--~~~~~l~~~~~~lk~i~~~~~G~d~id-~~~~~~~gI~v~~~  102 (294)
                      .+  +++++++.+ |++|+|.   +|+|++| ++.+.++||.|+|+
T Consensus        84 ~~~~~~~~~l~~~-~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~  125 (300)
T 2rir_A           84 EEVVLKQDHLDRT-PAHCVIF---SGISNAYLENIAAQAKRKLVKL  125 (300)
T ss_dssp             SCEECCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHTTCCEEEG
T ss_pred             CCccchHHHHhhc-CCCCEEE---EecCCHHHHHHHHHCCCEEEee
Confidence            23  566666654 5555554   4555555 45455444444444

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.01  E-value=1.4e-09  Score=102.11  Aligned_cols=214  Identities=13%  Similarity=0.173  Sum_probs=130.2

Q ss_pred             CCCchhHHHhhc-cceEEEcCCCC--CCCCHHHHH-----------HHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEe
Q psy5259          14 PRVSPAYDILED-MFDIITYPISE--GRMPRDIFI-----------EKLKGCSALLCNPHQKVDKEALDESGENLKVIST   79 (294)
Q Consensus        14 ~~~~~~~~~l~~-~~~v~~~~~~~--~~~~~e~~~-----------~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~   79 (294)
                      +..|+..++|.+ +++|..-...+  ...+.+++.           +.++++|+++.. ..+.++|+... .++..++..
T Consensus        17 ~ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~v-k~p~~~e~~~l-~~~~~l~~~   94 (377)
T 2vhw_A           17 AITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKV-KEPIAAEYGRL-RHGQILFTF   94 (377)
T ss_dssp             SCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEECS-SCCCGGGGGGC-CTTCEEEEC
T ss_pred             CcCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEEe-CCCChHHHhhc-CCCCEEEEE
Confidence            344777788866 78886632210  135666666           234568877543 44565565544 366666666


Q ss_pred             ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259          80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA  159 (294)
Q Consensus        80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~  159 (294)
                      ...++|...++.+.++||.+-..                                +.++.+.        .+.|..  .+
T Consensus        95 ~~~~~~~~~l~~l~~~gi~~ia~--------------------------------e~v~~~~--------~~~p~~--s~  132 (377)
T 2vhw_A           95 LHLAASRACTDALLDSGTTSIAY--------------------------------ETVQTAD--------GALPLL--AP  132 (377)
T ss_dssp             CCGGGCHHHHHHHHHHTCEEEEG--------------------------------GGCCCTT--------SCCTTT--HH
T ss_pred             ecccCCHHHHHHHHHcCCeEEEe--------------------------------eeccccC--------CCcccc--Cc
Confidence            56667777777777666644222                                3333221        234444  46


Q ss_pred             HHHHHHHHHHHHh-cCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------------------
Q psy5259         160 VAEFNIGLAIAVS-RRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------------------  212 (294)
Q Consensus       160 VAE~al~l~l~~~-r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------------------  212 (294)
                      +||++..+++.+. |++..    ...|+|..+.      +..++.|++++|+|.                          
T Consensus       133 ~ae~ag~~a~~~a~r~l~~----~~~g~~~~~~------~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~  202 (377)
T 2vhw_A          133 MSEVAGRLAAQVGAYHLMR----TQGGRGVLMG------GVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINID  202 (377)
T ss_dssp             HHHHHHHHHHHHHHHHTSG----GGTSCCCCTT------CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             hHHHHHHHHHHHHHHHHHH----hcCCCccccc------CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            6699985544443 66633    2334442211      125789999999999                          


Q ss_pred             ------c-CCCc-------ccCHHHHhccCCEEEEec--CCCcccccccccccc-----cCcCCCHHHHHHHHHcCCceE
Q psy5259         213 ------E-LGAQ-------LVPLDTLCAQSDFIFVTC--ALTKDTEQLIGRKQF-----RGGLLDQEALVEFLRDKKIGG  271 (294)
Q Consensus       213 ------~-~~~~-------~~~l~ell~~sDvV~l~~--p~t~~T~~li~~~~~-----RG~lvde~aL~~aL~~g~i~g  271 (294)
                            + ++..       ..+++++++++|+|+.++  |.+ +|.++|+++.|     .|.+||-.     ...|   |
T Consensus       203 ~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va-----~~~G---g  273 (377)
T 2vhw_A          203 KLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIA-----IDQG---G  273 (377)
T ss_dssp             HHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGG-----GGTT---C
T ss_pred             HHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEe-----cCCC---C
Confidence                  1 2322       235778899999999955  666 88999988777     34455543     1223   1


Q ss_pred             EEeeCCCC-CCCCCCCCCcCCCCC
Q psy5259         272 AGLDVMIP-EPMPADHPLVQLDNC  294 (294)
Q Consensus       272 a~LDV~~~-EP~~~~~~l~~~~nv  294 (294)
                          ||+. ||.+.++|++.++||
T Consensus       274 ----v~e~~ep~~~~~~~~~~~~v  293 (377)
T 2vhw_A          274 ----CFEGSRPTTYDHPTFAVHDT  293 (377)
T ss_dssp             ----SBTTCCCBCSSSCEEEETTE
T ss_pred             ----ccccccCCCCCCCEEEECCE
Confidence                7887 998888899988875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.95  E-value=3.1e-11  Score=116.76  Aligned_cols=132  Identities=14%  Similarity=0.088  Sum_probs=99.4

Q ss_pred             EEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCE
Q psy5259         127 ISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGST  206 (294)
Q Consensus       127 i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gkt  206 (294)
                      +...++|+|++  ..+.++|+.++++++.+. +|||+.       .|++......+..+ |.+     ..+  ..+.|++
T Consensus       215 veetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r-----~~~--~~l~Gkt  276 (494)
T 3ce6_A          215 TEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INR-----GTD--ALIGGKK  276 (494)
T ss_dssp             EECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHH-----HHC--CCCTTCE
T ss_pred             EEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHh-----ccC--CCCCcCE
Confidence            34679999988  778899999999999988 999953       34443333333333 422     122  5789999


Q ss_pred             EEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc----
Q psy5259         207 VGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF----  250 (294)
Q Consensus       207 vgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~----  250 (294)
                      |+|+|+                                ..+++..+++++++++|+|+.|++    |.++|+++.|    
T Consensus       277 V~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk  352 (494)
T 3ce6_A          277 VLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIMLEHIKAMK  352 (494)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSC
T ss_pred             EEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcC
Confidence            999999                                245556689999999999999974    6678886665    


Q ss_pred             ---------cCcC-CCHHHHHH-HHHcCCceEEEeeCCCCCC
Q psy5259         251 ---------RGGL-LDQEALVE-FLRDKKIGGAGLDVMIPEP  281 (294)
Q Consensus       251 ---------RG~l-vde~aL~~-aL~~g~i~ga~LDV~~~EP  281 (294)
                               |+.. ||+++|+. +|++++|. +++|+|+.+|
T Consensus       353 ~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~  393 (494)
T 3ce6_A          353 DHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGD  393 (494)
T ss_dssp             TTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTT
T ss_pred             CCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCC
Confidence                     8888 99999999 89899998 6789987643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.48  E-value=6.3e-07  Score=83.56  Aligned_cols=216  Identities=11%  Similarity=0.197  Sum_probs=114.3

Q ss_pred             CCCchhHHHhhc-cceEEEcCCCC--CCCCHHHHHH----------HccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259          14 PRVSPAYDILED-MFDIITYPISE--GRMPRDIFIE----------KLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus        14 ~~~~~~~~~l~~-~~~v~~~~~~~--~~~~~e~~~~----------~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      +..|+..++|.+ +++|..-...+  ...+.+++.+          .+ ++|+++.. ..++ .+.++.+.|+.++++..
T Consensus        17 ~l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~v-k~p~-~~~~~~l~~~~~~~~~~   93 (369)
T 2eez_A           17 ALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKV-KEPL-PEEYGFLREGLILFTYL   93 (369)
T ss_dssp             SSCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECS-SCCC-GGGGGGCCTTCEEEECC
T ss_pred             CcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEE-CCCC-HHHHhhcCCCcEEEEEe
Confidence            344777888866 78886632211  1357777775          45 79998854 3455 44466666888899888


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ..+.|...++.+.++||.+.-.                                +.++.+    .|    +.|-.+..+.
T Consensus        94 ~~~~~~~~~~~l~~~gi~~ia~--------------------------------e~~~~~----~~----~~~~l~~~s~  133 (369)
T 2eez_A           94 HLAADRGLTEAMLRSGVTGIAY--------------------------------ETVQLP----DG----TLPLLVPMSE  133 (369)
T ss_dssp             CGGGCHHHHHHHHHHTCEEEEG--------------------------------GGCCCT----TC----CCTTTHHHHH
T ss_pred             cccCCHHHHHHHHHCCCeEEEe--------------------------------eccccc----cC----CeeecccchH
Confidence            8888888888888888866321                                111111    01    1133444455


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc----------------------------
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT----------------------------  212 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~----------------------------  212 (294)
                      ++...+.+++.. .+.....  .++.|        .++..++.+++++|+|.                            
T Consensus       134 ~ag~~av~~a~~-~l~~~~~--g~~~~--------~~~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~  202 (369)
T 2eez_A          134 VAGRMAPQVGAQ-FLEKPKG--GRGVL--------LGGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRL  202 (369)
T ss_dssp             HHHHHHHHHHHH-HTSGGGT--SCCCC--------TTCBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             HHHHHHHHHHHH-HHHHhcC--CCcee--------cCCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            454334443332 2222211  01122        11225789999999999                            


Q ss_pred             ----c-CCCc-------ccCHHHHhccCCEEEEecCCCc-ccccccccccc-----cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259         213 ----E-LGAQ-------LVPLDTLCAQSDFIFVTCALTK-DTEQLIGRKQF-----RGGLLDQEALVEFLRDKKIGGAGL  274 (294)
Q Consensus       213 ----~-~~~~-------~~~l~ell~~sDvV~l~~p~t~-~T~~li~~~~~-----RG~lvde~aL~~aL~~g~i~ga~L  274 (294)
                          + .+..       ..+++++++.+|+|+.+++... .+.++++++.+     .|.+||-..     ..|   |+ +
T Consensus       203 ~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~-----~~g---g~-~  273 (369)
T 2eez_A          203 QYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV-----DQG---GC-V  273 (369)
T ss_dssp             HHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC----------------
T ss_pred             HHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEec-----CCC---CC-C
Confidence                1 2221       2357788899999999999776 68888887777     455665541     222   44 8


Q ss_pred             eCCCCCCCCCCCCCcCCCCC
Q psy5259         275 DVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       275 DV~~~EP~~~~~~l~~~~nv  294 (294)
                      |++  ||.+.++|++.++||
T Consensus       274 d~~--ep~~~~~~~~~~~~v  291 (369)
T 2eez_A          274 ETI--RPTTHAEPTYVVDGV  291 (369)
T ss_dssp             --------------CEETTE
T ss_pred             Ccc--cCCCCCCCEEEECCE
Confidence            988  676666788776653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.45  E-value=1.9e-07  Score=88.24  Aligned_cols=91  Identities=10%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             CCchhHHHhhc-cceEEEcCCCC--CCCCHHHHHHH---------ccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259          15 RVSPAYDILED-MFDIITYPISE--GRMPRDIFIEK---------LKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus        15 ~~~~~~~~l~~-~~~v~~~~~~~--~~~~~e~~~~~---------l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      ..++...+|.+ +++|......+  .-.+.+++.+.         +-++|+++.. .. .+++.++.+.|++++|+....
T Consensus        25 ltP~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~adiil~v-k~-p~~~~i~~l~~~~~li~~~~~  102 (401)
T 1x13_A           25 ATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKV-NA-PLDDEIALLNPGTTLVSFIWP  102 (401)
T ss_dssp             CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEECS-SC-CCHHHHTTCCTTCEEEECCCG
T ss_pred             CCHHHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhcCCeEEEe-CC-CCHHHHHHhcCCCcEEEEecC
Confidence            33677777765 78887642211  13566777643         3348988864 22 357778877789999999999


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhh
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  112 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae  112 (294)
                      |+|+.+++.+.++||.+.     +.++|+|
T Consensus       103 ~~d~~~~~al~~~gI~v~-----~~e~v~~  127 (401)
T 1x13_A          103 AQNPELMQKLAERNVTVM-----AMDSVPR  127 (401)
T ss_dssp             GGCHHHHHHHHHTTCEEE-----EGGGCCC
T ss_pred             CCCHHHHHHHHHCCCEEE-----Eeehhhh
Confidence            999999999999999884     3455554

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.45  E-value=2.3e-09  Score=101.72  Aligned_cols=86  Identities=14%  Similarity=0.248  Sum_probs=70.0

Q ss_pred             cC-cCCCEEEEEcc------------c-CCCcc---------------cCHHHHhccCCE-EEEecCCCccccccccccc
Q psy5259         200 IG-LNGSTVGIVGT------------E-LGAQL---------------VPLDTLCAQSDF-IFVTCALTKDTEQLIGRKQ  249 (294)
Q Consensus       200 ~~-l~gktvgIiG~------------~-~~~~~---------------~~l~ell~~sDv-V~l~~p~t~~T~~li~~~~  249 (294)
                      .+ ++|||+||+|+            . ++.+.               .+++++++.+|. .++ +|+ ++|++ |+.++
T Consensus       207 ~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~~~  283 (419)
T 1gtm_A          207 WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSV-KDF-PGATN-ITNEE  283 (419)
T ss_dssp             CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECHHH
T ss_pred             CcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCHHH
Confidence            66 99999999999            4 65442               158888886664 444 687 78999 78877


Q ss_pred             c------------cCcCCCHHHHHHHHHcCCceEEEeeCCCCCCCCCC-CCCcCCCCC
Q psy5259         250 F------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPAD-HPLVQLDNC  294 (294)
Q Consensus       250 ~------------RG~lvde~aL~~aL~~g~i~ga~LDV~~~EP~~~~-~~l~~~~nv  294 (294)
                      |            ||.+||+++ +++|+++.|.+++     +||++++ ++|++++||
T Consensus       284 l~~mk~dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V  335 (419)
T 1gtm_A          284 LLELEVDVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGI  335 (419)
T ss_dssp             HHHSCCSEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTC
T ss_pred             HHhCCCCEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCE
Confidence            7            999999999 6999999999988     9998754 799999886

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.27  E-value=9.2e-07  Score=82.89  Aligned_cols=88  Identities=9%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             CCCchhHHHhhc-cceEEEcCCCC--CCCCHHHHH-----------HHccCCcEEEeCCCCCC----CHHHHhhcCCCce
Q psy5259          14 PRVSPAYDILED-MFDIITYPISE--GRMPRDIFI-----------EKLKGCSALLCNPHQKV----DKEALDESGENLK   75 (294)
Q Consensus        14 ~~~~~~~~~l~~-~~~v~~~~~~~--~~~~~e~~~-----------~~l~~~d~~~~~~~~~~----~~~~l~~~~~~lk   75 (294)
                      +..|+..++|.+ +++|..-...+  ...+.+++.           +.++++|+++.. ..++    +++.++.+.+..+
T Consensus        17 ~l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~   95 (384)
T 1l7d_A           17 AISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV-QRPMTAEEGTDEVALIKEGAV   95 (384)
T ss_dssp             SCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCE
T ss_pred             CCCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEe-cCcccccCCHHHHHhhccCCE
Confidence            344677777776 67886632211  135666666           456789998865 3466    7888988877889


Q ss_pred             EEEeccccCcccChhhHhhCCcEEeec
Q psy5259          76 VISTFSVGHDHLHLDQIKSRGIRVGTV  102 (294)
Q Consensus        76 ~i~~~~~G~d~id~~~~~~~gI~v~~~  102 (294)
                      +++....+.|+.+++.+.++||.+.+.
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~gi~~~~~  122 (384)
T 1l7d_A           96 LMCHLGALTNRPVVEALTKRKITAYAM  122 (384)
T ss_dssp             EEEECCGGGCHHHHHHHHHTTCEEEEG
T ss_pred             EEEEecccCCHHHHHHHHHCCCEEEEe
Confidence            998888889999999999999988764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.25  E-value=2.2e-06  Score=81.28  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             Eeecccccc-ccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEE
Q psy5259         129 TFSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTV  207 (294)
Q Consensus       129 ~~~~G~d~i-d~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktv  207 (294)
                      ..++|+..+ ......+.+|+|.|++....++..+...+..-.+...+.   +              ..+  .++.||++
T Consensus       154 eTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~---r--------------atg--~~L~GktV  214 (436)
T 3h9u_A          154 ETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK---R--------------ATD--VMIAGKTA  214 (436)
T ss_dssp             CSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---H--------------HHC--CCCTTCEE
T ss_pred             ccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHH---H--------------hcC--CcccCCEE
Confidence            335565443 234456789999999987777755555543332222221   0              113  68999999


Q ss_pred             EEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-----
Q psy5259         208 GIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-----  250 (294)
Q Consensus       208 gIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-----  250 (294)
                      ||+|+                                ..+++..++++++++||+|++    ++.|+++|+++.|     
T Consensus       215 gIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~  290 (436)
T 3h9u_A          215 CVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRD  290 (436)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCT
T ss_pred             EEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCC
Confidence            99999                                234566799999999999996    6689999999998     


Q ss_pred             --------cCcC-CCHHHHHHH
Q psy5259         251 --------RGGL-LDQEALVEF  263 (294)
Q Consensus       251 --------RG~l-vde~aL~~a  263 (294)
                              ||.. ||.++|.+.
T Consensus       291 gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          291 DAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             TEEEEECSSSGGGBCHHHHHHH
T ss_pred             CcEEEEeCCCCCccCHHHHHhh
Confidence                    9986 999999874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.97  E-value=1.9e-06  Score=81.37  Aligned_cols=155  Identities=14%  Similarity=0.215  Sum_probs=104.4

Q ss_pred             cCcceEEEeeccccccccchhh-----ccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccc-ccc
Q psy5259         122 KNLKVISTFSVGHDHLHLDQIK-----SRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT-QTV  195 (294)
Q Consensus       122 ~~Lk~i~~~~~G~d~id~~~~~-----~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~-~~~  195 (294)
                      ..++.+...++|+|++++.+..     ++++.+++.+|. ..+++++....++.+.|++....... .+.|..... ...
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~  157 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHH
Confidence            4567777889999999998887     888888888777 46899999999999999887665433 445531100 000


Q ss_pred             ccc-ccCcCCCEEEEEcc----------------------------------cCCCc---ccCHHHHhccCCEEEEecCC
Q psy5259         196 ISD-IIGLNGSTVGIVGT----------------------------------ELGAQ---LVPLDTLCAQSDFIFVTCAL  237 (294)
Q Consensus       196 ~g~-~~~l~gktvgIiG~----------------------------------~~~~~---~~~l~ell~~sDvV~l~~p~  237 (294)
                      .+. ..++.|++++|+|.                                  .++..   +.+++++++.+|+|+.|+| 
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~-  236 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA-  236 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS-
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccC-
Confidence            000 02579999999999                                  11222   2357788899999999976 


Q ss_pred             CcccccccccccccCcCCCHHHHHH-HHHc--CCceEEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         238 TKDTEQLIGRKQFRGGLLDQEALVE-FLRD--KKIGGAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       238 t~~T~~li~~~~~RG~lvde~aL~~-aL~~--g~i~ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                        .+.++          ++.+.+.. .++.  +. ....+|+..  |.+.+.+++++|||
T Consensus       237 --~~~~~----------~~~~~l~~~~lk~r~~~-~~v~vdia~--P~~i~~~l~~l~~v  281 (404)
T 1gpj_A          237 --APHPV----------IHVDDVREALRKRDRRS-PILIIDIAN--PRDVEEGVENIEDV  281 (404)
T ss_dssp             --SSSCC----------BCHHHHHHHHHHCSSCC-CEEEEECCS--SCSBCTTGGGSTTE
T ss_pred             --CCCce----------ecHHHHHHHHHhccCCC-CEEEEEccC--CCCCCccccccCCe
Confidence              44444          34444444 3542  22 235788875  65556799999986

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.71  E-value=2.8e-05  Score=73.82  Aligned_cols=59  Identities=19%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ..+.|||+||+|+                                ..+++..++++++++||+|+.+.    .|+|+|++
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~  318 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITI  318 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCH
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCH
Confidence            7899999999999                                13455678999999999999853    58999999


Q ss_pred             ccc-------------cCcC-CCHHHHHH
Q psy5259         248 KQF-------------RGGL-LDQEALVE  262 (294)
Q Consensus       248 ~~~-------------RG~l-vde~aL~~  262 (294)
                      +.|             ||.. ||+++|.+
T Consensus       319 e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          319 DHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             HHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             HHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            998             9998 99988874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.40  E-value=0.00016  Score=68.33  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=74.3

Q ss_pred             CcceEE-Eeecccccc-ccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccccc
Q psy5259         123 NLKVIS-TFSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDII  200 (294)
Q Consensus       123 ~Lk~i~-~~~~G~d~i-d~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~  200 (294)
                      +++=+. ..++|+-.+ ......+..++|.|+.+....+--+...+.--.+.    ....        +     ..+  .
T Consensus       156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~----~gi~--------r-----at~--~  216 (435)
T 3gvp_A          156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESIL----DGLK--------R-----TTD--M  216 (435)
T ss_dssp             TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHH----HHHH--------H-----HHC--C
T ss_pred             hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHH----HHHH--------H-----hhC--c
Confidence            444333 335565433 23334467899999988766665553333211111    1110        0     113  6


Q ss_pred             CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259         201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK  248 (294)
Q Consensus       201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~  248 (294)
                      .+.||+++|+|+                                ..+++..++++++++||+|+++    +.|+++|+++
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e  292 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTRE  292 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHH
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHH
Confidence            889999999999                                2244567899999999999994    5789999988


Q ss_pred             cc-------------cCcC-CCHHHHH
Q psy5259         249 QF-------------RGGL-LDQEALV  261 (294)
Q Consensus       249 ~~-------------RG~l-vde~aL~  261 (294)
                      .|             ||.. ||.++|.
T Consensus       293 ~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          293 HLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             HHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             HHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            88             8877 7877664

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.18  E-value=0.0012  Score=60.88  Aligned_cols=49  Identities=24%  Similarity=0.320  Sum_probs=37.8

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|++++.++||.|   ... ...-++-+.=+.+++.
T Consensus        83 ~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V---~n~-~g~~~~~vAE~~~~l~  131 (351)
T 3jtm_A           83 KAKNLKLLLTAGIGSDHIDLQAAAAAGLTV---AEV-TGSNVVSVAEDELMRI  131 (351)
T ss_dssp             HCSSCCEEEESSSCCTTBCHHHHHHTTCEE---EEC-TTTTHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEeCeeecccCHHHHHhcCeeE---EEC-CCcCchHHHHHHHHHH
Confidence            679999999999999999999999999999   332 2344555555555554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.12  E-value=0.0002  Score=64.28  Aligned_cols=87  Identities=17%  Similarity=0.148  Sum_probs=49.6

Q ss_pred             HHHHHHccCCcEEEeCCCCCCCH-HHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHH
Q psy5259          42 DIFIEKLKGCSALLCNPHQKVDK-EALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA  120 (294)
Q Consensus        42 e~~~~~l~~~d~~~~~~~~~~~~-~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~  120 (294)
                      +++++.++.-..++. +.+.++- +.+.+  .++.+..+..                 ...++++++.+|||+++++++.
T Consensus        88 ~~~l~~~~~l~~i~~-G~d~id~~~~~~~--~gi~v~~~~~-----------------~~~~~~~~~~svae~a~~~~l~  147 (293)
T 3d4o_A           88 EEMIEKTPNHCVVYS-GISNTYLNQCMKK--TNRTLVKLME-----------------RDDIAIYNSIPTAEGTIMMAIQ  147 (293)
T ss_dssp             HHHHHTSCTTCEEEE-SSCCHHHHHHHHH--HTCEEEEGGG-----------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEEe-cCCCHHHHHHHHH--cCCeEEEecC-----------------CceeeeeccHhHHHHHHHHHHH
Confidence            556677777666663 3445542 33333  3455554431                 0134567889999999998876


Q ss_pred             ccCcceEEEeeccccccccchhhccCcEEEeeC-CCchHHHHHHHHH
Q psy5259         121 VKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIG  166 (294)
Q Consensus       121 ~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~-~~~~~~VAE~al~  166 (294)
                      ...                  ..-+|.++...+ |..+..+|....+
T Consensus       148 ~~~------------------~~l~g~~v~IiG~G~iG~~~a~~l~~  176 (293)
T 3d4o_A          148 HTD------------------FTIHGANVAVLGLGRVGMSVARKFAA  176 (293)
T ss_dssp             HCS------------------SCSTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             hcC------------------CCCCCCEEEEEeeCHHHHHHHHHHHh
Confidence            421                  112345555544 6666777766554

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.93  E-value=0.002  Score=59.37  Aligned_cols=49  Identities=31%  Similarity=0.475  Sum_probs=38.6

Q ss_pred             Hc-cCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AV-KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~-~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++ ++||+|++.++|+|++|+++++++||.|   ... ....++-+.=+.+++.
T Consensus        90 ~~~~~Lk~I~~~~~G~D~id~~~a~~~gI~V---~n~-pg~~~~~vAE~a~~l~  139 (345)
T 4g2n_A           90 KLQPGLKTIATLSVGYDHIDMAAARSLGIKV---LHT-PDVLSDACAEIAMLLV  139 (345)
T ss_dssp             HTTTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-CSCCHHHHHHHHHHHH
T ss_pred             hhcCCceEEEEcCCcccccCHHHHHhCCEEE---EEC-CcccchHHHHHHHHHH
Confidence            55 7999999999999999999999999999   332 3355666666666664

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.92  E-value=0.0023  Score=58.59  Aligned_cols=49  Identities=29%  Similarity=0.397  Sum_probs=38.9

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|+++++++||.|   ... ....++-+.=+.+++.
T Consensus        64 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-~~~~~~~vAE~~~~~~  112 (330)
T 4e5n_A           64 ACPELRVIGCALKGFDNFDVDACTARGVWL---TFV-PDLLTVPTAELAIGLA  112 (330)
T ss_dssp             HCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-SSTTHHHHHHHHHHHH
T ss_pred             hCCCCcEEEECCCcccccCHHHHHhcCcEE---EeC-CCCCchHHHHHHHHHH
Confidence            569999999999999999999999999999   332 3345666666666554

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.81  E-value=0.0014  Score=60.53  Aligned_cols=65  Identities=23%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             CcCCCEEEEEcc--------------------------------cCCCcccCHHHHhc-cCCEEEEecCCCccccccccc
Q psy5259         201 GLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCA-QSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       201 ~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~-~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ++.|||++|+|+                                .++.++.+++++|+ .||+++.     .+|.+.||+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP-----~A~~~~I~~  246 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP-----CAMGGVITT  246 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEE-----CSCSCCBCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecH-----hHHHhhcCH
Confidence            799999999999                                13445667889998 8999984     368889988


Q ss_pred             ccc------------cCcCCCHHHHHHHHHcCCceE
Q psy5259         248 KQF------------RGGLLDQEALVEFLRDKKIGG  271 (294)
Q Consensus       248 ~~~------------RG~lvde~aL~~aL~~g~i~g  271 (294)
                      +.+            ||.+++++| .++|+++.|..
T Consensus       247 ~~~~~lk~~iVie~AN~p~t~~eA-~~~L~~~gIlv  281 (355)
T 1c1d_A          247 EVARTLDCSVVAGAANNVIADEAA-SDILHARGILY  281 (355)
T ss_dssp             HHHHHCCCSEECCSCTTCBCSHHH-HHHHHHTTCEE
T ss_pred             HHHhhCCCCEEEECCCCCCCCHHH-HHHHHhCCEEE
Confidence            665            999999888 59999998863

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.77  E-value=0.0006  Score=62.32  Aligned_cols=49  Identities=24%  Similarity=0.303  Sum_probs=38.5

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|++++.++||.|   .... ...++-+.=+.+++.
T Consensus        58 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~~-g~~~~~vAE~~~~~~  106 (324)
T 3evt_A           58 PTNQLKFVQVISAGVDYLPLKALQAAGVVV---ANTS-GIHADAISESVLAAM  106 (324)
T ss_dssp             TTCCCCEEECSSSCCTTSCHHHHHHTTCEE---ECCT-THHHHHHHHHHHHHH
T ss_pred             hCCCceEEEECCccccccCHHHHHHCCcEE---EECC-CcCchHHHHHHHHHH
Confidence            469999999999999999999999999999   3332 344565555666554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.70  E-value=0.0037  Score=56.90  Aligned_cols=49  Identities=37%  Similarity=0.636  Sum_probs=37.6

Q ss_pred             HccC-cceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKN-LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~-Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++ ||+|++.++|+|++|++.++++||.|   .... ...++-+.=+.+++.
T Consensus        63 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~p-~~~~~~vAE~~~~l~  112 (320)
T 1gdh_A           63 RIPENIKCISTYSIGFDHIDLDACKARGIKV---GNAP-HGVTVATAEIAMLLL  112 (320)
T ss_dssp             HSCTTCCEEEEESSCCTTBCHHHHHHTTCEE---ECCC-CSCHHHHHHHHHHHH
T ss_pred             hCCccceEEEECCcccccccHHHHHhCCcEE---EEcC-CCCHHHHHHHHHHHH
Confidence            5688 99999999999999999999999999   3322 234555555556554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.68  E-value=0.0033  Score=58.27  Aligned_cols=50  Identities=26%  Similarity=0.272  Sum_probs=37.7

Q ss_pred             HHccCcceEEEeeccccccccchhhcc--CcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         119 IAVKNLKVISTFSVGHDHLHLDQIKSR--GIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       119 l~~~~Lk~i~~~~~G~d~id~~~~~~~--GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .++++||+|+..++|+|++|++++.++  ||.|   ... ....++-+.=+.+++.
T Consensus        80 ~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V---~n~-pg~~~~~vAE~~~~~~  131 (364)
T 2j6i_A           80 DKAKKLKLVVVAGVGSDHIDLDYINQTGKKISV---LEV-TGSNVVSVAEHVVMTM  131 (364)
T ss_dssp             HHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEE---EEC-TTSSHHHHHHHHHHHH
T ss_pred             hhCCCCeEEEECCcccccccHHHHHhcCCCEEE---EEC-CCcCcHHHHHHHHHHH
Confidence            367999999999999999999999999  9999   332 2334555555555554

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=96.63  E-value=0.0038  Score=57.21  Aligned_cols=49  Identities=35%  Similarity=0.407  Sum_probs=37.8

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|++.++|+|++|+++++++||.|   ... ...-++-+.=+.+++.
T Consensus        61 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-p~~~~~~vAE~~~~l~  109 (334)
T 3kb6_A           61 KMPRLKLIHTRSVGFDHIDLDYCKKKGILV---THI-PAYSPESVAEHTFAMI  109 (334)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHHTCEE---ECC-TTSCHHHHHHHHHHHH
T ss_pred             cCCCCcEEEECCcccchhcHHHHHHCCCEE---EEC-CCcCcHHHHHHHHHHH
Confidence            679999999999999999999999999999   332 2344555555555554

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.59  E-value=0.0047  Score=56.46  Aligned_cols=49  Identities=24%  Similarity=0.520  Sum_probs=37.8

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|+..++|+|++|+++++++||.|   .... ...++-+.=+.+++.
T Consensus        64 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~~-~~~~~~vAE~~~~~~  112 (334)
T 2dbq_A           64 NAPKLRIVANYAVGYDNIDIEEATKRGIYV---TNTP-DVLTDATADLAFALL  112 (334)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECCC-STTHHHHHHHHHHHH
T ss_pred             hCCCceEEEECCcccccccHHHHHhCCCEE---EeCC-CcCHHHHHHHHHHHH
Confidence            569999999999999999999999999999   3332 334555555556554

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.41  E-value=0.0034  Score=57.69  Aligned_cols=49  Identities=27%  Similarity=0.384  Sum_probs=39.1

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|++.++|+|++|+++++++||.|   ... ....++-+.=+.+++.
T Consensus        90 ~~p~Lk~I~~~g~G~d~id~~~a~~~gI~V---~n~-pg~~~~~vAE~a~~l~  138 (340)
T 4dgs_A           90 KLPSLGIIAINGVGTDKVDLARARRRNIDV---TTT-PGVLADDVADLGIALM  138 (340)
T ss_dssp             HCSSCCEEEEESSCCTTBCHHHHHHTTCEE---ECC-CSSSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccccCHHHHHhCCEEE---EEC-CCCCcchHHHHHHHHH
Confidence            679999999999999999999999999999   332 3345666666666554

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.24  E-value=0.0082  Score=56.21  Aligned_cols=50  Identities=24%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             HHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         119 IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       119 l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      -++++||+|++.++|+|++|+++++++||.|   ... ...-++-+.=+.+++.
T Consensus       109 ~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V---~n~-~g~~~~~VAE~al~li  158 (393)
T 2nac_A          109 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTV---AEV-TYCNSISVAEHVVMMI  158 (393)
T ss_dssp             HHCTTCCEEEESSSCCTTBCHHHHHHTTCEE---EEC-TTTTHHHHHHHHHHHH
T ss_pred             hhCCCCcEEEEcCccccccCHHHHhcCCEEE---EeC-CCcccHHHHHHHHHHH
Confidence            3679999999999999999999999999999   332 3334555555555553

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.17  E-value=0.0099  Score=54.19  Aligned_cols=49  Identities=55%  Similarity=0.766  Sum_probs=37.9

Q ss_pred             Hc-cCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AV-KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~-~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++ ++||+|+..++|+|++|++.++++||.|   .... ...++-+.-+.+++.
T Consensus        72 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~~-~~~~~~vAe~~~~~~  121 (330)
T 2gcg_A           72 AAGANLKVISTMSVGIDHLALDEIKKRGIRV---GYTP-DVLTDTTAELAVSLL  121 (330)
T ss_dssp             HHCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECCC-STTHHHHHHHHHHHH
T ss_pred             hcCCCceEEEECCcccccccHHHHHhCCceE---EeCC-CCChHHHHHHHHHHH
Confidence            56 8999999999999999999999999999   3333 334555555555554

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.11  E-value=0.0045  Score=56.96  Aligned_cols=14  Identities=29%  Similarity=0.323  Sum_probs=12.6

Q ss_pred             cCcceEEEeecccc
Q psy5259         122 KNLKVISTFSVGHD  135 (294)
Q Consensus       122 ~~Lk~i~~~~~G~d  135 (294)
                      .+||+|+..++|+|
T Consensus        69 ~~Lk~I~~~~~G~d   82 (343)
T 2yq5_A           69 YGVKCIGLRIVGFN   82 (343)
T ss_dssp             TTCCEEEESSSCCT
T ss_pred             cCceEEEECceeec
Confidence            47999999999987

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.03  E-value=0.0065  Score=57.29  Aligned_cols=49  Identities=27%  Similarity=0.316  Sum_probs=39.3

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|++.++|+|++|+++|+++||.|   -. ....-++-+.=+.+++.
T Consensus        77 ~~p~Lk~I~~~~~G~d~IDl~~a~~~GI~V---~n-~p~~n~~aVAE~~l~l~  125 (416)
T 3k5p_A           77 AANRLIAVGCFSVGTNQVELKAARKRGIPV---FN-APFSNTRSVAELVIGEI  125 (416)
T ss_dssp             HCTTCCEEEECSSCCTTBCHHHHHHTTCCE---EC-CSSTTHHHHHHHHHHHH
T ss_pred             hCCCcEEEEECccccCccCHHHHHhcCcEE---Ee-CCCcccHHHHHHHHHHH
Confidence            679999999999999999999999999999   32 23445666666666654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.01  E-value=0.009  Score=54.08  Aligned_cols=49  Identities=39%  Similarity=0.612  Sum_probs=38.3

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|+++++++||.|   .... ...++-+.=+.+++.
T Consensus        62 ~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v---~n~~-~~~~~~vAE~~~~~~  110 (311)
T 2cuk_A           62 RAKGLKVIACYSVGVDHVDLEAARERGIRV---THTP-GVLTEATADLTLALL  110 (311)
T ss_dssp             HSTTCCEEECSSSCCTTBCHHHHHTTTCEE---ECCC-STTHHHHHHHHHHHH
T ss_pred             hCCCCeEEEECCcCccccCHHHHHhCCcEE---EECC-CCChHHHHHHHHHHH
Confidence            568999999999999999999999999999   3332 345565555566554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.94  E-value=0.0088  Score=54.73  Aligned_cols=49  Identities=33%  Similarity=0.535  Sum_probs=38.4

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|++.++|+|++|+++++++||.|   ... ....++-+.=+.+++.
T Consensus        84 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-pg~~~~~vAE~~~~l~  132 (333)
T 3ba1_A           84 ALPKLEIVSSFSVGLDKVDLIKCEEKGVRV---TNT-PDVLTDDVADLAIGLI  132 (333)
T ss_dssp             HCTTCCEEEESSSCCTTBCHHHHHHHTCEE---ECC-CSTTHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEcCccccccCHHHHHhCCcEE---EEC-CCcchHHHHHHHHHHH
Confidence            679999999999999999999999999999   332 3345665555666554

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.93  E-value=0.0097  Score=54.39  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=36.3

Q ss_pred             HccC--cceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~--Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++  ||+|+..++|+|++|+++++++||.|   ....+ ..++-+.=+.+++.
T Consensus        65 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~p~-~~~~~vAE~~~~l~  115 (333)
T 1j4a_A           65 ALADNGITKMSLRNVGVDNIDMAKAKELGFQI---TNVPV-YSPNAIAEHAAIQA  115 (333)
T ss_dssp             HHHHTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECCCC-SCHHHHHHHHHHHH
T ss_pred             hccccCCeEEEECCcccccccHHHHHhCCCEE---EeCCC-CCchHHHHHHHHHH
Confidence            4455  99999999999999999999999999   33322 34455555555553

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.90  E-value=0.011  Score=53.31  Aligned_cols=49  Identities=29%  Similarity=0.402  Sum_probs=38.1

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|++.++|+|++|++.++++||.|   ... ....++-+.=+.+++.
T Consensus        63 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~-~g~~~~~vAE~~~~~~  111 (307)
T 1wwk_A           63 SAPKLKVIARAGVGLDNIDVEAAKEKGIEV---VNA-PAASSRSVAELAVGLM  111 (307)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHHTCEE---ECC-GGGGHHHHHHHHHHHH
T ss_pred             hCCCCeEEEECCccccccCHHHHHhCCcEE---EEC-CCCChHHHHHHHHHHH
Confidence            568999999999999999999999999999   333 3345555555556554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.88  E-value=0.0079  Score=55.10  Aligned_cols=49  Identities=20%  Similarity=0.284  Sum_probs=37.5

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|++.++|+|++|+++++++||.|   .... ...++-+.=+.+++.
T Consensus        86 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~p-~~~~~~vAE~~~~l~  134 (335)
T 2g76_A           86 AAEKLQVVGRAGTGVDNVDLEAATRKGILV---MNTP-NGNSLSAAELTCGMI  134 (335)
T ss_dssp             HCSSCCEEEESSSSCTTBCHHHHHHHTCEE---ECCS-STTHHHHHHHHHHHH
T ss_pred             hCCCCcEEEECCCCcchhChHHHHhCCeEE---EECC-CccchHHHHHHHHHH
Confidence            579999999999999999999999999999   3322 334555555555553

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=95.78  E-value=0.024  Score=51.70  Aligned_cols=49  Identities=24%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             HccC--cceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~--Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++  ||+|+..++|+|++|+++++++||.|   .... ..-++-+.-+.+++.
T Consensus        64 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~p-~~~~~~vAE~~~~l~  114 (331)
T 1xdw_A           64 IYKKLGVKYILTRTAGTDHIDKEYAKELGFPM---AFVP-RYSPNAIAELAVTQA  114 (331)
T ss_dssp             HHHHHTCCEEEESSSCCTTBCHHHHHHTTCCE---ECCC-CCCHHHHHHHHHHHH
T ss_pred             hCcccCceEEEEccccccccCHHHHHhCCcEE---EeCC-CCCcHHHHHHHHHHH
Confidence            4455  99999999999999999999999999   3332 234455555555554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.70  E-value=0.013  Score=55.12  Aligned_cols=49  Identities=27%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|++.++|+|++|+++++++||.|   .. ....-++-+.=+.+++.
T Consensus        66 ~~~~Lk~I~~~~~G~d~iD~~~a~~~GI~V---~n-~p~~n~~~vAE~~~~~~  114 (404)
T 1sc6_A           66 AAEKLVAIGAFAIGTNQVDLDAAAKRGIPV---FN-APFSNTRSVAELVIGEL  114 (404)
T ss_dssp             HCSSCCEEEECSSCCTTBCHHHHHHTTCCE---EC-CTTTTHHHHHHHHHHHH
T ss_pred             hCCCCcEEEECCcccCccCHHHHHhCCCEE---Ee-cCcccHHHHHHHHHHHH
Confidence            569999999999999999999999999999   22 23455666666666554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=95.58  E-value=0.017  Score=52.73  Aligned_cols=49  Identities=20%  Similarity=0.351  Sum_probs=36.2

Q ss_pred             HccC--cceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~--Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++  ||+|++.++|+|++|+++++++||.|   .... ..-++-+.=+.+++.
T Consensus        63 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~p-~~~~~~vAE~~~~l~  113 (333)
T 1dxy_A           63 KMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL---SNVP-AYSPAAIAEFALTDT  113 (333)
T ss_dssp             HHHHTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECCT-TSCHHHHHHHHHHHH
T ss_pred             hCcccCceEEEEcCcccCccCHHHHHhCCCEE---EeCC-CCCchHHHHHHHHHH
Confidence            4455  99999999999999999999999999   3332 234455555555553

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.50  E-value=0.0092  Score=54.54  Aligned_cols=49  Identities=33%  Similarity=0.459  Sum_probs=38.3

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|++.++|+|++|+++++++||.|   ... ....++-+.-+.+++.
T Consensus        61 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~-~~~~~~~vAE~~~~~~  109 (333)
T 2d0i_A           61 NAERLKVISCHSAGYDNIDLEEATKRGIYV---TKV-SGLLSEAVAEFTVGLI  109 (333)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-CHHHHHHHHHHHHHHH
T ss_pred             hCCCceEEEECCcccccccHHHHHhCCcEE---EeC-CCcChHHHHHHHHHHH
Confidence            568999999999999999999999999999   332 3345565555566554

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.49  E-value=0.022  Score=52.51  Aligned_cols=48  Identities=21%  Similarity=0.291  Sum_probs=39.2

Q ss_pred             HccCcceEEEeeccc----cccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGH----DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~----d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|++.++|+    |++|+++++++||.|     .|+...++-+.=+.+++.
T Consensus        68 ~~~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V-----~n~pg~~~~vAE~al~l~  119 (352)
T 3gg9_A           68 RLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVV-----LEGKGSPVAPAELTWALV  119 (352)
T ss_dssp             TCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEE-----ECCCCCSHHHHHHHHHHH
T ss_pred             hCCCCeEEEEeCcccCCccCcccHHHHHhCCeEE-----EECCCCcHHHHHHHHHHH
Confidence            569999999999999    999999999999999     454444676655666654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.46  E-value=0.013  Score=53.03  Aligned_cols=49  Identities=24%  Similarity=0.388  Sum_probs=37.9

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|++.++|+|++|++.+.++||.|   ... ....++-+.=+.+++.
T Consensus        65 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v---~n~-~g~~~~~vAE~~~~~~  113 (313)
T 2ekl_A           65 KGKKLKIIARAGIGLDNIDTEEAEKRNIKV---VYA-PGASTDSAVELTIGLM  113 (313)
T ss_dssp             HCTTCCEEEECSSCCTTBCHHHHHHTTCEE---ECC-TTTTHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEcCCCCCccCHHHHHhCCeEE---EeC-CCCCchHHHHHHHHHH
Confidence            569999999999999999999999999999   333 2334555555555554

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.03  E-value=0.019  Score=52.78  Aligned_cols=49  Identities=27%  Similarity=0.372  Sum_probs=37.4

Q ss_pred             Hcc-CcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVK-NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~-~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      +++ +||+|++.++|+|++|+++++++||.|   ... ....++-+.=+.+++.
T Consensus        76 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v---~n~-p~~~~~~vAe~~~~l~  125 (348)
T 2w2k_A           76 HLPSSLKVFAAAGAGFDWLDLDALNERGVAF---ANS-RGAGDTATSDLALYLI  125 (348)
T ss_dssp             TSCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-TTTTHHHHHHHHHHHH
T ss_pred             hcccCceEEEECCccccccCHHHHHhCCcEE---EEC-CCCCcHHHHHHHHHHH
Confidence            556 699999999999999999999999999   332 2334555555556554

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.01  E-value=0.014  Score=54.07  Aligned_cols=49  Identities=18%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             HccCcceEEEe-eccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~-~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|+.. ++|+|++|+++++++||.|   . ......++-+.=+.+++.
T Consensus        93 ~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V---~-n~~~~~~~~vAE~~l~l~  142 (365)
T 4hy3_A           93 RMPALRSILNVESNLLNNMPYEVLFQRGIHV---V-TTGQVFAEPVAEIGLGFA  142 (365)
T ss_dssp             TCTTCCEEECCSSSCCSCSCTTHHHHSCCEE---E-ECGGGGHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEecccccCcccHHHHhcCCeEE---E-eCCCccchHHHHHHHHHH
Confidence            56999999975 8999999999999999999   3 233455666666666554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=94.75  E-value=0.017  Score=52.61  Aligned_cols=39  Identities=18%  Similarity=0.090  Sum_probs=27.0

Q ss_pred             HhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeecccccccc
Q psy5259          92 IKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHL  139 (294)
Q Consensus        92 ~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~  139 (294)
                      +++..+.+++.     .-.++    .+..+++||+|+..++|+|++|+
T Consensus        45 ~~~ad~li~~~-----~~~~~----~l~~~~~Lk~I~~~~~G~d~id~   83 (324)
T 3hg7_A           45 IGEAHILMAEP-----ARAKP----LLAKANKLSWFQSTYAGVDVLLD   83 (324)
T ss_dssp             GGGCSEEEECH-----HHHGG----GGGGCTTCCEEEESSSCCGGGSC
T ss_pred             hCCCEEEEECC-----CCCHH----HHhhCCCceEEEECCCCCCccCh
Confidence            56667777643     11111    23356999999999999999986

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=94.48  E-value=0.012  Score=51.48  Aligned_cols=48  Identities=10%  Similarity=0.034  Sum_probs=28.4

Q ss_pred             CCHHHHHHHccC----CcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccCh
Q psy5259          39 MPRDIFIEKLKG----CSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHL   89 (294)
Q Consensus        39 ~~~e~~~~~l~~----~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~   89 (294)
                      .+.+++.+.+++    +.++.+  ..++.++++..+ ++++-++....|+|.++.
T Consensus        38 ~~~~~l~~~i~~l~~~~~G~~v--t~P~k~~i~~~~-~~l~~~a~~~gavn~i~~   89 (263)
T 2d5c_A           38 TPLEALPGRLKEVRRAFRGVNL--TLPLKEAALAHL-DWVSPEAQRIGAVNTVLQ   89 (263)
T ss_dssp             CCGGGHHHHHHHHHHHCSEEEE--CTTCTTGGGGGC-SEECHHHHHHTCCCEEEE
T ss_pred             CCHHHHHHHHHhccccCceEEE--cccCHHHHHHHH-HHHhHHHHHhCCCCcEEc
Confidence            345555555544    344444  347778887765 666666666667777654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=94.26  E-value=0.019  Score=52.79  Aligned_cols=49  Identities=22%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|+..++|+|++|+++++++||.|   ....+ ..++-+.=+.+++.
T Consensus        82 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V---~n~~~-~~~~~vAE~~~~l~  130 (347)
T 1mx3_A           82 KFKALRIIVRIGSGFDNIDIKSAGDLGIAV---CNVPA-ASVEETADSTLCHI  130 (347)
T ss_dssp             TCSSCCEEEESSSCCTTBCHHHHHHTTCEE---ECCCS-TTHHHHHHHHHHHH
T ss_pred             hCCCCCEEEEcccccCcccHHHHHhCCceE---EECCC-CCHHHHHHHHHHHH
Confidence            568999999999999999999999999999   44333 34566655666554

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=94.00  E-value=0.043  Score=51.06  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=27.4

Q ss_pred             ccCcceEEEeeccccccccchhhccCcEE
Q psy5259         121 VKNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus       121 ~~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      .++||+|+..++|+|++|++.++++||.|
T Consensus        59 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v   87 (381)
T 3oet_A           59 GTPINFVGTATAGTDHVDEAWLKQAGIGF   87 (381)
T ss_dssp             TSCCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             CCCCEEEEEccccccccCHHHHHhCCEEE
Confidence            36799999999999999999999999999

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=93.83  E-value=0.047  Score=52.93  Aligned_cols=49  Identities=24%  Similarity=0.335  Sum_probs=37.8

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++++||+|++.++|+|++|+++++++||.|   ... ...-++-+.=+.+++.
T Consensus        63 ~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v---~n~-p~~~~~~vAE~~~~~~  111 (529)
T 1ygy_A           63 AAPKLKIVARAGVGLDNVDVDAATARGVLV---VNA-PTSNIHSAAEHALALL  111 (529)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHTTCEE---ECC-TTSSHHHHHHHHHHHH
T ss_pred             hCCCCcEEEECCcCcCccCHhHHHhCCeEE---EEC-CCcchHHHHHHHHHHH
Confidence            569999999999999999999999999999   332 2344555555555554

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=93.46  E-value=0.012  Score=56.39  Aligned_cols=85  Identities=18%  Similarity=0.101  Sum_probs=58.4

Q ss_pred             CCceEEE-eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHcc-CcceEEEeeccccccccchhhccCcEE
Q psy5259          72 ENLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK-NLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus        72 ~~lk~i~-~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~-~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      |+++.|+ ..++|+|++  +.++++||.++|++++++ +|+|+.+-.+..++ .++      .|...  .....-.|.+|
T Consensus       192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae~l~r~~~~~~~~l~------~gw~r--~~~~~l~GktV  260 (479)
T 1v8b_A          192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTKQKYDNVYGCRHSLP------DGLMR--ATDFLISGKIV  260 (479)
T ss_dssp             TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHHHTTHHHHHHHHHHH------HHHHH--HHCCCCTTSEE
T ss_pred             cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHHHHHhchHhHHHHHh------hhhhh--ccccccCCCEE
Confidence            7899999 889999998  889999999999999999 99995432222221 110      11100  00112356677


Q ss_pred             EeeC-CCchHHHHHHHHHH
Q psy5259         150 GTVG-PVSSDAVAEFNIGL  167 (294)
Q Consensus       150 ~~~~-~~~~~~VAE~al~l  167 (294)
                      ...+ |..+.++|..+.++
T Consensus       261 gIIG~G~IG~~vA~~l~~~  279 (479)
T 1v8b_A          261 VICGYGDVGKGCASSMKGL  279 (479)
T ss_dssp             EEECCSHHHHHHHHHHHHH
T ss_pred             EEEeeCHHHHHHHHHHHhC
Confidence            7666 78888888888765

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=93.34  E-value=0.092  Score=46.96  Aligned_cols=48  Identities=23%  Similarity=0.137  Sum_probs=29.7

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      .+++||+|++.++|+|++|++.   ..-.  ...-.+....++-+.=+.+++.
T Consensus        46 ~~~~Lk~I~~~~~G~d~id~~~---~~~~--~~~~~~~~~~~~~vAE~~~~~~   93 (290)
T 3gvx_A           46 LGKRTKMIQAISAGVDHIDVNG---IPEN--VVLCSNAGAYSISVAEHAFALL   93 (290)
T ss_dssp             CCSSCCEEEECSSCCTTSCGGG---SCTT--SEEECCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhcCCceeecCC---Cccc--eEEeecCCcceeeHHHHHHHHH
Confidence            5699999999999999999752   2211  0111344555554444455544

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=93.33  E-value=0.013  Score=56.48  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=59.4

Q ss_pred             CCceEEE-eccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEE
Q psy5259          72 ENLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVG  150 (294)
Q Consensus        72 ~~lk~i~-~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~  150 (294)
                      |+++.|+ ..++|+|++  ++++++||.++|++++++ +|||+.+-.+..+++-.+     .|..  ......-.|.+|.
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l~r~~~~~~~~l~-----~gw~--~~~g~~L~GktVg  281 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSKFDNLYGCRESLV-----DGIK--RATDVMIAGKIAV  281 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHHHHHHHHHHTTHH-----HHHH--HHHCCCCTTCEEE
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHHHhhhHhhhhhhh-----hhhh--hccccccCCCEEE
Confidence            7899999 889999998  889999999999999999 999976544433322110     1110  0011123566776


Q ss_pred             eeC-CCchHHHHHHHHHH
Q psy5259         151 TVG-PVSSDAVAEFNIGL  167 (294)
Q Consensus       151 ~~~-~~~~~~VAE~al~l  167 (294)
                      ..+ |..+..+|..+.++
T Consensus       282 IIG~G~IG~~vA~~l~~~  299 (494)
T 3d64_A          282 VAGYGDVGKGCAQSLRGL  299 (494)
T ss_dssp             EECCSHHHHHHHHHHHTT
T ss_pred             EEccCHHHHHHHHHHHHC
Confidence            666 77888888887654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=93.14  E-value=0.086  Score=48.72  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=45.3

Q ss_pred             CcCCCEEEEEcc---------------------------------cCCCcccCHHHHhc-cCCEEEEecCCCcccccccc
Q psy5259         201 GLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCA-QSDFIFVTCALTKDTEQLIG  246 (294)
Q Consensus       201 ~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~-~sDvV~l~~p~t~~T~~li~  246 (294)
                      ++.||||+|+|+                                 .++.+..+.++++. +||+++.|.     +.+.|+
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~  244 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN  244 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC
Confidence            799999999999                                 12445567778877 899998763     666777


Q ss_pred             cccc------------cCcCCCHHHHHHHHHcCCc
Q psy5259         247 RKQF------------RGGLLDQEALVEFLRDKKI  269 (294)
Q Consensus       247 ~~~~------------RG~lvde~aL~~aL~~g~i  269 (294)
                      .+.+            ++.+.+++ ..+.|+++.+
T Consensus       245 ~~~~~~lg~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          245 DFTIPQLKAKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             TTHHHHCCCSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             HHHHHhCCCcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            6544            77777755 4466666655

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=92.15  E-value=0.061  Score=50.02  Aligned_cols=29  Identities=31%  Similarity=0.533  Sum_probs=28.0

Q ss_pred             ccCcceEEEeeccccccccchhhccCcEE
Q psy5259         121 VKNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus       121 ~~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      +++||+|+..++|+|++|++.++++||.|
T Consensus        56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v   84 (380)
T 2o4c_A           56 GSPVRFVGTCTIGTDHLDLDYFAEAGIAW   84 (380)
T ss_dssp             TSCCCEEEECSSCSTTBCHHHHHHHTCEE
T ss_pred             CCCceEEEEcCcccchhhHHHHHhCCCEE
Confidence            59999999999999999999999999998

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=91.91  E-value=0.063  Score=48.39  Aligned_cols=53  Identities=6%  Similarity=-0.066  Sum_probs=37.4

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccccc-c---c----------cCcCCCHHHHHHHHHcCCceE
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRK-Q---F----------RGGLLDQEALVEFLRDKKIGG  271 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~-~---~----------RG~lvde~aL~~aL~~g~i~g  271 (294)
                      .++++++++||+|++++|..+..+..+..+ .   +          .+.....+.+.+.+++..+..
T Consensus        79 ~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~  145 (320)
T 4dll_A           79 EQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH  145 (320)
T ss_dssp             SSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence            479999999999999999766666665421 1   1          444445677888888766553

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=91.46  E-value=0.13  Score=46.03  Aligned_cols=52  Identities=10%  Similarity=0.013  Sum_probs=39.0

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCce
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIG  270 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~  270 (294)
                      .++++++++||+|++++|....++.+++++.+             .....+.+.+.+.+++..+.
T Consensus        57 ~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           57 ESVKAALSASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             SSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            47999999999999999977767777753233             55555677888888776554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=91.34  E-value=0.11  Score=44.95  Aligned_cols=20  Identities=5%  Similarity=0.150  Sum_probs=17.2

Q ss_pred             CHHHHhccCCEEEEecCCCc
Q psy5259         220 PLDTLCAQSDFIFVTCALTK  239 (294)
Q Consensus       220 ~l~ell~~sDvV~l~~p~t~  239 (294)
                      ++++++++||+|++++|...
T Consensus        83 ~~~e~~~~aDvVilavp~~~  102 (245)
T 3dtt_A           83 AFADVAAGAELVVNATEGAS  102 (245)
T ss_dssp             EHHHHHHHCSEEEECSCGGG
T ss_pred             CHHHHHhcCCEEEEccCcHH
Confidence            57788999999999999654

>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*

Probab=90.97  E-value=2.3  Score=33.19  Aligned_cols=56  Identities=16%  Similarity=0.279  Sum_probs=35.8

Q ss_pred             CCCCeEEEecCCCCCCchhHH----Hhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCCC
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYD----ILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNPH   59 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~----~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~~   59 (294)
                      |++++|++..+.-...+....    .|+. +|+++....   ..+.|++.+.+.  ++|++..+..
T Consensus         1 ~~~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~---~~p~e~~v~~a~~~~~d~v~lS~~   63 (137)
T 1ccw_A            1 MEKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGV---LSPQELFIKAAIETKADAILVSSL   63 (137)
T ss_dssp             CCCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEE---EECHHHHHHHHHHHTCSEEEEEEC
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHhcCCCEEEEEec
Confidence            788998886542222232222    2333 799997655   468899887764  6888887643

>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}

Probab=90.82  E-value=0.14  Score=44.89  Aligned_cols=152  Identities=23%  Similarity=0.196  Sum_probs=84.5

Q ss_pred             CCCCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC--CCHH---HHHHHccCCcEEEeCCCCCCC--HHHHhhcCC
Q psy5259           1 MSKPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR--MPRD---IFIEKLKGCSALLCNPHQKVD--KEALDESGE   72 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~--~~~e---~~~~~l~~~d~~~~~~~~~~~--~~~l~~~~~   72 (294)
                      |..++||+|.| -+...+..+.|++ +++++.++.....  .+.+   +.++.+.++|.++..+..-+.  -+.+...++
T Consensus        12 ~~g~~IlvTRp-~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~~   90 (269)
T 3re1_A           12 MSAWRLLLTRP-AEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVWP   90 (269)
T ss_dssp             -CCCEEEECSC-HHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCC-hHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCC
Confidence            56789999996 4423455666766 7888877653211  1222   334456788998876533222  133333333


Q ss_pred             CceEEEeccccCcccChhhHhhCCcEEeecCC-CChhhhhhhhHHHH--HHccCcceEEEeeccccccccchhhccCcEE
Q psy5259          73 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGP-VSSDAVAEFNIGLA--IAVKNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus        73 ~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~-~~~~~vae~~~~~~--l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      .++-+..+.+|-  --.+.+++.|+.+-..|. ++++.++++.. +.  ...+.-+++...+.+....-.+.++++|+.|
T Consensus        91 ~~~~~~i~aVG~--~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~-l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v  167 (269)
T 3re1_A           91 QPPMQPWFSVGS--ATGQILLDYGLDASWPEQGDDSEALLDHPR-LKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGV  167 (269)
T ss_dssp             SCCCSCEEESSH--HHHHHHHHTTCCEECC-------CGGGCHH-HHHHHCSSSCEEEEEECSSCCCHHHHHHHHTTCEE
T ss_pred             CcccCEEEEECH--HHHHHHHHcCCCcccCCCCCCHHHHHHhhh-hcccccCCCCEEEEEccCccHHHHHHHHHHCCCEE
Confidence            332122222231  123568899999877755 58888888653 11  1345667777777665555567788899888


Q ss_pred             EeeCCCc
Q psy5259         150 GTVGPVS  156 (294)
Q Consensus       150 ~~~~~~~  156 (294)
                      ...+-|.
T Consensus       168 ~~~~vY~  174 (269)
T 3re1_A          168 DYLPLYR  174 (269)
T ss_dssp             EEEECEE
T ss_pred             EEEeEEE
Confidence            7766543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=90.57  E-value=0.11  Score=46.69  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             HHHHHccCcceEEEeecccccccc
Q psy5259         116 GLAIAVKNLKVISTFSVGHDHLHL  139 (294)
Q Consensus       116 ~~~l~~~~Lk~i~~~~~G~d~id~  139 (294)
                      ..+..+++||+|++.++|+|++|+
T Consensus        43 ~~l~~~~~Lk~I~~~~~G~d~id~   66 (303)
T 1qp8_A           43 EELAKMPRLKFIQVVTAGLDHLPW   66 (303)
T ss_dssp             HHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             HHHhhCCCCcEEEECCcCcccccH
Confidence            334467999999999999999975

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=90.51  E-value=0.13  Score=46.10  Aligned_cols=52  Identities=4%  Similarity=-0.114  Sum_probs=34.1

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccc--ccc---c----------cCcCCCHHHHHHHHHcCCce
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIG--RKQ---F----------RGGLLDQEALVEFLRDKKIG  270 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~--~~~---~----------RG~lvde~aL~~aL~~g~i~  270 (294)
                      .++++++++||+|++++|....++..+-  .+.   +          ....-..+.+.+.+.+..+.
T Consensus        69 ~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           69 ESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            4799999999999999997666666551  111   1          22223456677777766544

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=89.15  E-value=0.17  Score=48.59  Aligned_cols=39  Identities=8%  Similarity=0.107  Sum_probs=27.1

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcCCce
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIG  270 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g~i~  270 (294)
                      .++.+++++||+|++++|..... .++          +  .+...|+.|.+.
T Consensus       113 ~s~aEAa~~ADVVILaVP~~~~~-eVl----------~--eI~p~LK~GaIL  151 (525)
T 3fr7_A          113 GDIWETVSGSDLVLLLISDAAQA-DNY----------E--KIFSHMKPNSIL  151 (525)
T ss_dssp             EEHHHHHHHCSEEEECSCHHHHH-HHH----------H--HHHHHSCTTCEE
T ss_pred             CCHHHHHhcCCEEEECCChHHHH-HHH----------H--HHHHhcCCCCeE
Confidence            36789999999999999965443 232          2  356666777663

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=87.70  E-value=0.2  Score=45.52  Aligned_cols=46  Identities=20%  Similarity=0.287  Sum_probs=33.7

Q ss_pred             cCcCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccc
Q psy5259         200 IGLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIG  246 (294)
Q Consensus       200 ~~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~  246 (294)
                      ..+.+++|||||+                                 ..+....++++++++||+|++++|... ...++.
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~-~~~v~~   90 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEF-QGRLYK   90 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence            5678899999999                                 122223377889999999999999553 355555

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=87.14  E-value=0.57  Score=41.54  Aligned_cols=59  Identities=15%  Similarity=0.134  Sum_probs=33.0

Q ss_pred             hhhhhHhcCCCCccccccccccccCcCCCEEEEEc-c------------cCCCc--------ccCHHHHhccCCEEEEec
Q psy5259         177 QGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVG-T------------ELGAQ--------LVPLDTLCAQSDFIFVTC  235 (294)
Q Consensus       177 ~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG-~------------~~~~~--------~~~l~ell~~sDvV~l~~  235 (294)
                      ++..+.++..|...          ....++||||| +            ..+.+        ..++++.+++||+|++++
T Consensus         4 ~~~~~~~~~~~~~~----------~~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilav   73 (298)
T 2pv7_A            4 ESYANENQFGFKTI----------NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSV   73 (298)
T ss_dssp             ---------CCCCS----------CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECS
T ss_pred             hHHhhhhccCcccc----------CCCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeC
Confidence            34445556678531          12357899999 7            22211        125788999999999999


Q ss_pred             CCCcccccccc
Q psy5259         236 ALTKDTEQLIG  246 (294)
Q Consensus       236 p~t~~T~~li~  246 (294)
                      |... +..++.
T Consensus        74 p~~~-~~~vl~   83 (298)
T 2pv7_A           74 PINL-TLETIE   83 (298)
T ss_dssp             CGGG-HHHHHH
T ss_pred             CHHH-HHHHHH
Confidence            9654 555543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=87.02  E-value=0.42  Score=45.26  Aligned_cols=38  Identities=29%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             cCcCCCEEEEEcc--------------------------------------cCCCcccCHHHHhccCCEEEEecCC
Q psy5259         200 IGLNGSTVGIVGT--------------------------------------ELGAQLVPLDTLCAQSDFIFVTCAL  237 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------------~~~~~~~~l~ell~~sDvV~l~~p~  237 (294)
                      .-|+||||+||||                                      +.|.+..+..|..+.||+|.+.+|-
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD  108 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD  108 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCG
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCCh
Confidence            5689999999999                                      2345566899999999999999993

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=86.83  E-value=0.58  Score=41.05  Aligned_cols=31  Identities=6%  Similarity=0.135  Sum_probs=22.0

Q ss_pred             CHHHHhccCCEEEEecCCCc--ccccccccccc
Q psy5259         220 PLDTLCAQSDFIFVTCALTK--DTEQLIGRKQF  250 (294)
Q Consensus       220 ~l~ell~~sDvV~l~~p~t~--~T~~li~~~~~  250 (294)
                      +++++++++|+|++++|...  ++...++.+.+
T Consensus       179 ~~~~~~~~aDiVi~atp~~~~~~~~~~i~~~~l  211 (275)
T 2hk9_A          179 SPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLI  211 (275)
T ss_dssp             CGGGTGGGCSEEEECSSTTSSTTCCCSSCGGGC
T ss_pred             hHHhhhcCCCEEEEeCCCCCCCCCCCCCCHHHc
Confidence            67888999999999999764  23334543334

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=86.10  E-value=0.33  Score=43.12  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=74.7

Q ss_pred             HccCcceEEEeeccccccc-cchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccccccccc
Q psy5259         120 AVKNLKVISTFSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISD  198 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id-~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~  198 (294)
                      .++++|+|.   +|+|++| ++++.++||.|+|+++.+  ++         ++.|++..+     .|.|....  ...+ 
T Consensus        95 ~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~~~~--~~~~-  152 (300)
T 2rir_A           95 RTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIMLAI--QHTD-  152 (300)
T ss_dssp             TSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHHHHH--HTCS-
T ss_pred             hcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHHHHH--HhcC-
Confidence            568999988   8999999 899999999999999874  33         223444333     34453210  1234 


Q ss_pred             ccCcCCCEEEEEcc--------------------------------cCCCc---ccCHHHHhccCCEEEEecCCCccccc
Q psy5259         199 IIGLNGSTVGIVGT--------------------------------ELGAQ---LVPLDTLCAQSDFIFVTCALTKDTEQ  243 (294)
Q Consensus       199 ~~~l~gktvgIiG~--------------------------------~~~~~---~~~l~ell~~sDvV~l~~p~t~~T~~  243 (294)
                       .+++|+|+||||+                                +.+.+   ..++++++++||+|++|+|+     +
T Consensus       153 -~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~  226 (300)
T 2rir_A          153 -YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----M  226 (300)
T ss_dssp             -SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----C
T ss_pred             -CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----h
Confidence             7899999999999                                12222   25789999999999999996     6


Q ss_pred             ccccccc
Q psy5259         244 LIGRKQF  250 (294)
Q Consensus       244 li~~~~~  250 (294)
                      +++++.|
T Consensus       227 ~i~~~~~  233 (300)
T 2rir_A          227 ILNQTVL  233 (300)
T ss_dssp             CBCHHHH
T ss_pred             hhCHHHH
Confidence            7766554

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=84.68  E-value=0.3  Score=43.55  Aligned_cols=30  Identities=13%  Similarity=0.083  Sum_probs=23.8

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccccc
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRK  248 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~  248 (294)
                      .++.|+.++||+|++++|-.+..+..+..+
T Consensus        53 ~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~   82 (297)
T 4gbj_A           53 ENAIDAITPGGIVFSVLADDAAVEELFSME   82 (297)
T ss_dssp             SSGGGGCCTTCEEEECCSSHHHHHHHSCHH
T ss_pred             CCHHHHHhcCCceeeeccchhhHHHHHHHH
Confidence            479999999999999999776666655443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=84.32  E-value=0.63  Score=42.69  Aligned_cols=60  Identities=10%  Similarity=0.211  Sum_probs=40.0

Q ss_pred             cCHHHHhccC---CEEEEecCCCccccccccc-------ccc-----cCcCCCHHHHHHHHHcCCceEEEeeCCCC
Q psy5259         219 VPLDTLCAQS---DFIFVTCALTKDTEQLIGR-------KQF-----RGGLLDQEALVEFLRDKKIGGAGLDVMIP  279 (294)
Q Consensus       219 ~~l~ell~~s---DvV~l~~p~t~~T~~li~~-------~~~-----RG~lvde~aL~~aL~~g~i~ga~LDV~~~  279 (294)
                      .+++++++.+   |+|++++|.. .++.++..       ..+     .+...+...+.+.+.+..+......|.-.
T Consensus        70 ~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           70 RSIEEFCAKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             SSHHHHHHHSCSSCEEEECSCGG-GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             CCHHHHHhcCCCCCEEEEeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            4799999999   9999999976 66655521       111     33333567788888887776554445443

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=83.72  E-value=0.79  Score=40.90  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=27.7

Q ss_pred             hhhHhcCCCCccccccccccccCcCCCEEEEEcc--------------cC---------------------CCcc-cCHH
Q psy5259         179 HNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT--------------EL---------------------GAQL-VPLD  222 (294)
Q Consensus       179 ~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~--------------~~---------------------~~~~-~~l~  222 (294)
                      ++.++.+.|.++++...   +....-++|||||+              .+                     +... .+++
T Consensus         2 ~~~~~~~~~~~~~~~~~---~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~   78 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENL---YFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVA   78 (312)
T ss_dssp             --------------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHH
T ss_pred             CcccccccccccCcccc---cccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHH
Confidence            34566777765443211   13445679999999              11                     1111 3688


Q ss_pred             HHhccCCEEEEecCCCccc
Q psy5259         223 TLCAQSDFIFVTCALTKDT  241 (294)
Q Consensus       223 ell~~sDvV~l~~p~t~~T  241 (294)
                      +++++||+|++++|.....
T Consensus        79 e~~~~aDvVi~~vp~~~~~   97 (312)
T 3qsg_A           79 EVAGECDVIFSLVTAQAAL   97 (312)
T ss_dssp             HHHHHCSEEEECSCTTTHH
T ss_pred             HHHhcCCEEEEecCchhHH
Confidence            9999999999999976643

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=83.14  E-value=0.3  Score=44.10  Aligned_cols=50  Identities=12%  Similarity=0.164  Sum_probs=31.2

Q ss_pred             HccCcceEEEeecccccc-c-cchhhccCcEEEeeCCCchH--HHHHHHHHHHHHHh
Q psy5259         120 AVKNLKVISTFSVGHDHL-H-LDQIKSRGIRVGTVGPVSSD--AVAEFNIGLAIAVS  172 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~i-d-~~~~~~~GI~v~~~~~~~~~--~VAE~al~l~l~~~  172 (294)
                      . ++||+|+..++|+|++ | +++  +.+..-..++-.+..  ..++-+.=+.+++.
T Consensus        57 ~-~~Lk~I~~~~aG~d~i~d~~~a--~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~  110 (315)
T 3pp8_A           57 G-RRLKAVFVLGAGVDAILSKLNA--HPEMLDASIPLFRLEDTGMGLQMQEYAVSQV  110 (315)
T ss_dssp             T-CCCSEEEESSSCCHHHHHHHHH--CTTSSCTTSCEEEC--CCCHHHHHHHHHHHH
T ss_pred             C-CCceEEEECCEecccccchhhh--hhhhhcCCCEEEEcCCCCccHHHHHHHHHHH
Confidence            5 9999999999999999 7 877  333333222323332  23555555666554

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=82.92  E-value=0.53  Score=42.05  Aligned_cols=28  Identities=11%  Similarity=0.067  Sum_probs=23.8

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccc
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIG  246 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~  246 (294)
                      .+..|+.+.||+|++++|-.+..+..+.
T Consensus        51 ~s~~e~~~~~dvv~~~l~~~~~v~~V~~   78 (300)
T 3obb_A           51 RSARDAVQGADVVISMLPASQHVEGLYL   78 (300)
T ss_dssp             SSHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred             CCHHHHHhcCCceeecCCchHHHHHHHh
Confidence            4799999999999999998887766654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=82.63  E-value=0.86  Score=42.24  Aligned_cols=30  Identities=13%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             CHHHHhccCCEEEEec--CCCcccccccccccc
Q psy5259         220 PLDTLCAQSDFIFVTC--ALTKDTEQLIGRKQF  250 (294)
Q Consensus       220 ~l~ell~~sDvV~l~~--p~t~~T~~li~~~~~  250 (294)
                      ++++.+++||+|+.+.  |. ..+.++|+++.+
T Consensus       258 ~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv  289 (381)
T 3p2y_A          258 ALEDAITKFDIVITTALVPG-RPAPRLVTAAAA  289 (381)
T ss_dssp             HHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHH
T ss_pred             HHHHHHhcCCEEEECCCCCC-cccceeecHHHH
Confidence            4778999999999775  53 346678777666

>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}

Probab=82.46  E-value=0.65  Score=40.01  Aligned_cols=150  Identities=17%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             CCeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC-C-C---HHHHHHHccCCcEEEeCCCCCCC--HHHHhhcCCCc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR-M-P---RDIFIEKLKGCSALLCNPHQKVD--KEALDESGENL   74 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~-~-~---~e~~~~~l~~~d~~~~~~~~~~~--~~~l~~~~~~l   74 (294)
                      -++||+|.| -+..++..+.|++ +++++.++..... . +   -++.+..+.++|.++..+..-+.  -+.+...++.+
T Consensus         6 g~~vlvtRp-~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~~   84 (254)
T 4es6_A            6 GWRLLLTRP-DEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQP   84 (254)
T ss_dssp             CCEEEECSC-HHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSSC
T ss_pred             CCEEEEeCC-hHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCc
Confidence            468999986 3322345566666 6788776543211 1 1   12334566789998876533222  12233323333


Q ss_pred             eEEEeccccCcccChhhHhhCCcEEeecC-CCChhhhhhhhHHHH-HHccCcceEEEeeccccccccchhhccCcEEEee
Q psy5259          75 KVISTFSVGHDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGLA-IAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTV  152 (294)
Q Consensus        75 k~i~~~~~G~d~id~~~~~~~gI~v~~~~-~~~~~~vae~~~~~~-l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~  152 (294)
                      +-+..+.+|-  --.+.+++.|+.+-..| +.+++.++++....- ...++-+++...+.+....-.+.++++|+.|...
T Consensus        85 ~~~~i~aVG~--~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~  162 (254)
T 4es6_A           85 PQQTWCSVGA--ATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYL  162 (254)
T ss_dssp             CSCEEEESSH--HHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred             ccCEEEEECH--HHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEE
Confidence            2122223331  12356788899988876 478888888654100 1346667777777666655567788899888766


Q ss_pred             CCC
Q psy5259         153 GPV  155 (294)
Q Consensus       153 ~~~  155 (294)
                      +-|
T Consensus       163 ~vY  165 (254)
T 4es6_A          163 PLY  165 (254)
T ss_dssp             ECE
T ss_pred             eEE
Confidence            654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=82.39  E-value=1.3  Score=42.29  Aligned_cols=98  Identities=13%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             eeccccccc-cchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEE
Q psy5259         130 FSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVG  208 (294)
Q Consensus       130 ~~~G~d~id-~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvg  208 (294)
                      .++|+..+. ........+++.|+.+....+.-+...+.--.+.           .+-| +     ..+  ..+.||+++
T Consensus       209 TttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~-----------dgi~-r-----~tg--~~L~GKtVv  269 (488)
T 3ond_A          209 TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLP-----------DGLM-R-----ATD--VMIAGKVAV  269 (488)
T ss_dssp             SHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHH-----------HHHH-H-----HHC--CCCTTCEEE
T ss_pred             ccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHH-----------HHHH-H-----HcC--CcccCCEEE
Confidence            355555431 2233456799999988655553333322211111           1111 0     122  578999999


Q ss_pred             EEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         209 IVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       209 IiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      |+|+                                ..+....+++++++.+|+|+.+.    .+.++|+.+.|
T Consensus       270 VtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~e~l  339 (488)
T 3ond_A          270 VAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIMLDHM  339 (488)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCHHHH
T ss_pred             EECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhHHHH
Confidence            9999                                12334567899999999999643    45677776555

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=81.89  E-value=1.6  Score=38.83  Aligned_cols=47  Identities=28%  Similarity=0.415  Sum_probs=36.5

Q ss_pred             cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      .+++||++.|+|.             ..++       +..+|++.+++||+|+.+.+.    -++|.++.+
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg~----p~~I~~~~v  222 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGC----VNLLRSDMV  222 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSSC----TTCBCGGGS
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCCC----CCcCCHHHc
Confidence            6789999999997             1222       234799999999999999983    356777776

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=81.39  E-value=1.2  Score=34.54  Aligned_cols=29  Identities=14%  Similarity=0.338  Sum_probs=22.0

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      .+++++++++|+|+.+.|..   ..++..+.|
T Consensus        72 ~~~~~~~~~~Divi~at~~~---~~~~~~~~l  100 (144)
T 3oj0_A           72 NDIDSLIKNNDVIITATSSK---TPIVEERSL  100 (144)
T ss_dssp             SCHHHHHHTCSEEEECSCCS---SCSBCGGGC
T ss_pred             cCHHHHhcCCCEEEEeCCCC---CcEeeHHHc
Confidence            47889999999999999855   345555544

>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}

Probab=81.32  E-value=2.7  Score=35.61  Aligned_cols=143  Identities=16%  Similarity=0.172  Sum_probs=84.9

Q ss_pred             CeEEEecCCCCCCchhHHHhhc-cceEEEcCCCCCC--CCHHHHHHHccCCcEEEeCCCCCCCH--HHHhhcCCCceEEE
Q psy5259           4 PKLLLTRNDYPRVSPAYDILED-MFDIITYPISEGR--MPRDIFIEKLKGCSALLCNPHQKVDK--EALDESGENLKVIS   78 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~-~~~v~~~~~~~~~--~~~e~~~~~l~~~d~~~~~~~~~~~~--~~l~~~~~~lk~i~   78 (294)
                      ++||+|.| -+..++..+.|++ +++++.++.....  ...++..+.+.++|.++..+..-+..  +.+...-+++++++
T Consensus         2 ~~vlvtRp-~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~a   80 (240)
T 3mw8_A            2 MKLLLTRP-EGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYA   80 (240)
T ss_dssp             CCEEECSC-TTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEE
T ss_pred             CEEEEeCC-hHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEE
Confidence            57999997 4444577777777 7788766543210  12245566788899988765322221  12221114444443


Q ss_pred             eccccCcccChhhHhhCCcEEeecCC-C-ChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCC
Q psy5259          79 TFSVGHDHLHLDQIKSRGIRVGTVGP-V-SSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGP  154 (294)
Q Consensus        79 ~~~~G~d~id~~~~~~~gI~v~~~~~-~-~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~  154 (294)
                         +|-  --.+.+++.|+..-..|. . +++.++++...  ...+.-+++...|.+....-.+.++++|+.|...+-
T Consensus        81 ---VG~--~Ta~~L~~~G~~~~~~p~~~~~~e~L~~~~~~--~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~  151 (240)
T 3mw8_A           81 ---VGD--ATADALALQGITAERSPADSQATEGLLTLPSL--EQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEV  151 (240)
T ss_dssp             ---SSH--HHHHHHHHTTCCCEECC---CCGGGGGGCGGG--TCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEE
T ss_pred             ---ECH--HHHHHHHHcCCCCccCCCCcCCHHHHHHhhhh--ccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEE
Confidence               221  123578899998766664 3 88888885321  123556777777766655556778889988776554

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=81.07  E-value=1.8  Score=38.49  Aligned_cols=47  Identities=19%  Similarity=0.230  Sum_probs=36.1

Q ss_pred             cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      .++.||++.|+|.             ..++       +..+|++.+++||+|+.+.|.    -++|.++.+
T Consensus       157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg~----p~~I~~~~v  223 (286)
T 4a5o_A          157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGK----PGLVKGEWI  223 (286)
T ss_dssp             CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECCCC----TTCBCGGGS
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECCCC----CCCCCHHHc
Confidence            6789999999997             1222       234799999999999999983    356777766

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=80.82  E-value=0.46  Score=42.03  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=33.7

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccc-------cccc-----cCcCCCHHHHHHHHHcCCceE
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIG-------RKQF-----RGGLLDQEALVEFLRDKKIGG  271 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~-------~~~~-----RG~lvde~aL~~aL~~g~i~g  271 (294)
                      .+++++++ ||+|++++|..+.++..+.       ...+     .......+.+.+.+.+..+..
T Consensus        63 ~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~  126 (296)
T 3qha_A           63 DSVADVAA-ADLIHITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHI  126 (296)
T ss_dssp             SSHHHHTT-SSEEEECCSSHHHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEE
T ss_pred             CCHHHHHh-CCEEEEECCChHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEE
Confidence            37899999 9999999997666655441       1111     333334567777777665543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=80.81  E-value=1.9  Score=38.28  Aligned_cols=47  Identities=19%  Similarity=0.271  Sum_probs=36.3

Q ss_pred             cCcCCCEEEEEcc-------------cCCC-------cccCHHHHhccCCEEEEecCCCcccccccccccc
Q psy5259         200 IGLNGSTVGIVGT-------------ELGA-------QLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF  250 (294)
Q Consensus       200 ~~l~gktvgIiG~-------------~~~~-------~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~  250 (294)
                      .++.||++.|||.             ..++       +..+|++.+++||+|+.+.+.    -++|.++.+
T Consensus       157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~----p~~I~~~~v  223 (285)
T 3l07_A          157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGK----PNFITADMV  223 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCC----TTCBCGGGS
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECCCC----CCCCCHHHc
Confidence            6789999999997             1222       234799999999999999983    356777776

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=80.75  E-value=0.53  Score=41.29  Aligned_cols=52  Identities=10%  Similarity=-0.007  Sum_probs=34.7

Q ss_pred             cCHHHHhccCCEEEEecCCCcccccccc--cc---cc----------cCcCCCHHHHHHHHHcCCce
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLIG--RK---QF----------RGGLLDQEALVEFLRDKKIG  270 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li~--~~---~~----------RG~lvde~aL~~aL~~g~i~  270 (294)
                      .++++++++||+|++++|..+.++..+.  .+   .+          .+.....+.+.+.+.+..+.
T Consensus        49 ~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           49 SSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             SCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            4799999999999999997666666551  11   11          33333456777777775544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	3e-19
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	1e-17
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	2e-17
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	4e-17
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	4e-15
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	3e-14
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	4e-11
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	3e-08
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	1e-10
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	6e-10
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	5e-09
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	2e-09
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	2e-06
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	7e-09
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	2e-07
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	8e-09
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	4e-08
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	7e-07
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	6e-05
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	1e-04
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	0.002

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 81.2 bits (199), Expect = 3e-19
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 43/179 (24%)

Query: 159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELG--- 215
           +VAE  + + +++ R +   H     G W +    +   D+  ++  TV      L    
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLR 61

Query: 216 ---------------------------AQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRK 248
                                            + +    D + + C L  +TE +I  +
Sbjct: 62  RLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDE 121

Query: 249 QF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
                          RG L D++A+   L   ++ G   DV  P+P P DHP   +   
Sbjct: 122 TLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 76.9 bits (188), Expect = 1e-17
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 40/177 (22%)

Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEW--------------------------ALK 190
             + AE  + L +A SR+       +    W                            +
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQ 61

Query: 191 QTQTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250
           +     + ++  +         +LG +L+ LD L A++DFI V    T +T  LI ++  
Sbjct: 62  RIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL 121

Query: 251 -------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNC 294
                        RGGL+D+ AL + +    +  AGLDV   EP   D PL +L   
Sbjct: 122 AKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQV 177

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 74.6 bits (183), Expect = 2e-17
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 3   KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKV 62
           K K+L+T         A     + +D+I +   + ++  D  IE  K   ALL   ++K 
Sbjct: 1   KKKILITWPLPE---AAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKC 56

Query: 63  DKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVK 122
            KE +D   EN+K IST+S+G DH+ LD  K+RGI+VG     ++ A  +        + 
Sbjct: 57  RKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLID 116

Query: 123 NL 124
            L
Sbjct: 117 AL 118

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 75.7 bits (185), Expect = 4e-17
 Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 45/182 (24%)

Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIG--LNGSTVGIVGTEL 214
           + A AE  + L +  +RR  +G   I +  W   +   ++ + +     G        + 
Sbjct: 2   TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61

Query: 215 GAQL-----------------------------VPLDTLCAQSDFIFVTCALTKDTEQLI 245
            A+                                LD+L + S F  +    T +T    
Sbjct: 62  LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121

Query: 246 GRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLD 292
            +                RG L+D E +V  L   ++  AG DV   EP   +     L 
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLP 180

Query: 293 NC 294
           N 
Sbjct: 181 NT 182

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 4e-15
 Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 48/185 (25%)

Query: 158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWA--LKQTQTVISDIIGLNGSTVGIVGTELG 215
           +  A+  +   + + RR    H  +  G     ++Q + V S    + G T+GI+G    
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 216 AQLVP--------------------------------LDTLCAQSDFIFVTCALTKDTEQ 243
            Q V                                 L  L   SD + + C L +    
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 244 LIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPLV 289
           LI                  RGGL+D++AL + L++ +I GA LDV   EP   +  PL 
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180

Query: 290 QLDNC 294
              N 
Sbjct: 181 DAPNL 185

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 67.3 bits (163), Expect = 3e-14
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 41/179 (22%)

Query: 157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT---- 212
           + +VAE  IG  + + R   + +     G        +  +    L     G +GT    
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGI 61

Query: 213 --------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-- 250
                                   Q+  L  L   SD + +       T+ ++G K+   
Sbjct: 62  LAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISL 121

Query: 251 -----------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNC 294
                      RG ++D  AL + L  K + GA +DV   EP     P   PL + DN 
Sbjct: 122 MKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 180

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 4e-11
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 4   PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVD 63
           P + L   D    +    IL+D+  +      + +  ++I  + L      L      + 
Sbjct: 2   PLVALL--DGRDCTVEMPILKDVATVAFC---DAQSTQEIHEKVLNEAVGALMYHTITLT 56

Query: 64  KEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           +E L E  + L++I     G D++ +      GI      P +S    + +I +    
Sbjct: 57  REDL-EKFKALRIIVRIGSGFDNIDIKSAGDLGI-AVCNVPAASVYSEQASIEMREEA 112

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
             K L++I     G D++ +      GI      P +S    + +I +    +R  ++  
Sbjct: 62  KFKALRIIVRIGSGFDNIDIKSAGDLGI-AVCNVPAASVYSEQASIEMREEAAREIRRAI 120

Query: 180 NCIASGEW 187
                   
Sbjct: 121 TGRIPDSL 128

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.9 bits (134), Expect = 1e-10
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 2   SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
           S P +L+     P        L D  ++           RD  +  +    ALL      
Sbjct: 1   SLPVVLIADKLAPS---TVAALGDQVEVRWVD----GPDRDKLLAAVPEADALLVRSATT 53

Query: 62  VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           VD E +  +   LK+++   VG D++ +D   +RG+ V      +S A A+   G  +A 
Sbjct: 54  VDAE-VLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAE 112

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 53.9 bits (129), Expect = 6e-10
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 27  FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGE-NLKVISTFSVGHD 85
             +  +         +  +E  KG   +             ++     +K ++  +VG D
Sbjct: 25  NTLEYHT----EFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD 80

Query: 86  HLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           ++ +  +K  GIR+  V   +  AV          +
Sbjct: 81  NIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHL 116

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 51.6 bits (123), Expect = 5e-09
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 123 NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 179
            +K ++  +VG D++ +  +K  GIR+  V   +  AV          +     +G 
Sbjct: 68  GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 18  PAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDE-SGENLKV 76
           P     ED    +    ++  +  +  +   KG   ++         E L   +   +  
Sbjct: 14  PFLKEWEDAHKDVEVEYTDKLLTPET-VALAKGADGVVVYQQLDYIAETLQALADNGITK 72

Query: 77  ISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA 120
           +S  +VG D++ + + K  G ++  V   S        +   + 
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVYS---YTTHAVRNMVV 113

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 118 AIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 177
           A+A   +  +S  +VG D++ + + K  G ++  V   S        +   +  +     
Sbjct: 64  ALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYS---YTTHAVRNMVVKAFDNNL 120

Query: 178 GHNCIASGEWALK 190
                   E  +K
Sbjct: 121 ELVEGKEAETPVK 133

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 52.3 bits (125), Expect = 7e-09
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 34  ISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQ 91
            S+   P  +F  +L     ++  P     +  E +    +NLK+  T  +G DH+ L  
Sbjct: 73  TSDKDGPDSVFERELVDADVVISQPFWPAYLTPERI-AKAKNLKLALTAGIGSDHVDLQS 131

Query: 92  IKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNL 124
              R + V  V   +S  +       A   + L
Sbjct: 132 AIDRNVTVAEVTYCNSTTLTAQARYAAGTREIL 164

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE--------FNIGLAIAV 171
             KNLK+  T  +G DH+ L     R + V  V   +S  +            I      
Sbjct: 110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFE 169

Query: 172 SRRFQQGHNCIASGEWA 188
            R  +  +  +  G  A
Sbjct: 170 GRPIRDEYLIVQGGALA 186

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 52.1 bits (123), Expect = 8e-09
 Identities = 24/172 (13%), Positives = 43/172 (25%), Gaps = 35/172 (20%)

Query: 158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGTELGAQ 217
           DAVAEF + L +A  +R  Q    +  G++       +I            I        
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKIL 61

Query: 218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGR------------------------------ 247
                 +   S           ++ +   R                              
Sbjct: 62  AALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAED 121

Query: 248 ----KQFRGGLLDQEALVEFLRDKKIGGAGLDVMI-PEPMPADHPLVQLDNC 294
                  R  +LD++ ++  L+++       DV         D     L N 
Sbjct: 122 AVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 48.9 bits (116), Expect = 4e-08
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 2   SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQK 61
            K K LL    + +   A + L            +G +  +   E ++    +       
Sbjct: 3   DKIKFLLVEGVHQK---ALESLRAAGYTNIE-FHKGALDDEQLKESIRDAHFIGLRSRTH 58

Query: 62  VDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV 121
           + ++    + E L  I  F++G + + LD    RGI V      S+    E NIGL +A 
Sbjct: 59  LTEDV-INAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQE-NIGLEVAG 116

Query: 122 KNLK 125
           K +K
Sbjct: 117 KLIK 120

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 46.8 bits (109), Expect = 7e-07
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 51/190 (26%)

Query: 156 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT------------QTVISDIIGLN 203
           S  A+AEF +   + + R   +    + +G++    T                  I  + 
Sbjct: 1   SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA 60

Query: 204 GSTVGIVG-------------TELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF 250
                  G                    V L+ L  QSD I +     +    +I    F
Sbjct: 61  IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAF 120

Query: 251 -------------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PA 284
                        R  L+D +A++  L+  K+ G G+D    E               P 
Sbjct: 121 NLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPL 180

Query: 285 DHPLVQLDNC 294
              L+ + N 
Sbjct: 181 WDELLGMPNV 190

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 51/188 (27%)

Query: 158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT------------------------- 192
           +A+AE     A  + R+ +     +A  +     T                         
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQI 61

Query: 193 QTVISDIIGLNGSTVGIVGTELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-- 250
                  +            + G  +  LD L  Q+D I +          +I  +    
Sbjct: 62  MEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121

Query: 251 -----------RGGLLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PADH 286
                      RG L+D +A++  L   KI G  +DV   E                   
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181

Query: 287 PLVQLDNC 294
            L+   N 
Sbjct: 182 DLIARPNV 189

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 29  IITYPISEG---RMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHD 85
            + + +       + +   I +      +      ++  E L      LK I   + G D
Sbjct: 4   YVNFELPPEAEEELRKYFKIVRGGDLGNVEAALVSRITAEEL-AKMPRLKFIQVVTAGLD 62

Query: 86  HLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA-VKNLKVISTFSVG 133
           HL  + I       G  G  +          + +  V+NL   +T    
Sbjct: 63  HLPWESIPPHVTVAGNAGS-NGYGNERVWRQMVMEAVRNLITYATGGRP 110

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 75  KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGH 134
           ++   F +  +     +   + +R G +G V +  V+         +  LK I   + G 
Sbjct: 2   ELYVNFELPPEAEEELRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGL 61

Query: 135 DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 174
           DHL  + I       G  G  +          + +   R 
Sbjct: 62  DHLPWESIPPHVTVAGNAGS-NGYGNERVWRQMVMEAVRN 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.98
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.98
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.98
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.93
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.9
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.86
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.83
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.76
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.75
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.69
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.58
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.35
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	98.89
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	97.88
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	97.76
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.74
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	97.69
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	97.57
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.52
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.05
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.96
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	91.78
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	90.34
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	86.45
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.96
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.77
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	84.23
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	83.68
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	81.23
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	80.94
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	80.13

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.6e-37  Score=260.47  Aligned_cols=133  Identities=35%  Similarity=0.584  Sum_probs=122.5

Q ss_pred             chHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-----------------------
Q psy5259         156 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-----------------------  212 (294)
Q Consensus       156 ~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-----------------------  212 (294)
                      |+++||||+++++|++.|++.++++.++++.|.+..   ..|  .++.||++||+|+                       
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~---~~~--~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~   75 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSS---FSG--TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP   75 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG---CCB--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc---ccc--ccccceeeeeccccchhHHHHHHhhhccceEEeecC
Confidence            578999999999999999999999999999996532   345  8999999999999                       


Q ss_pred             --------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceE
Q psy5259         213 --------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGG  271 (294)
Q Consensus       213 --------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~g  271 (294)
                              ..+.++.+++|++++||+|++|||+|++|+||||++.|             ||++|||+||++||++|+|+|
T Consensus        76 ~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~  155 (184)
T d1ygya1          76 YVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRA  155 (184)
T ss_dssp             TSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEE
T ss_pred             CCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeE
Confidence                    22345679999999999999999999999999999999             999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         272 AGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       272 a~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      |+||||++||++ ++|||++|||
T Consensus       156 a~lDV~~~EP~~-~~~l~~~~nv  177 (184)
T d1ygya1         156 AGLDVFATEPCT-DSPLFELAQV  177 (184)
T ss_dssp             EEESSCSSSSCS-CCGGGGCTTE
T ss_pred             EEEeCCCCCCCC-CchHhcCCCE
Confidence            999999999986 7999999996

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=4.9e-36  Score=255.40  Aligned_cols=135  Identities=27%  Similarity=0.386  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------
Q psy5259         157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------  212 (294)
Q Consensus       157 ~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------  212 (294)
                      ..+|||+++++||++.|++.++++.+++|.|..+......|  ++++|||+||+|+                        
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~--~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   79 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVG--EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH   79 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCcccccc--ceecccceEEeecccchHHHHHHHHhhcccccccccc
Confidence            46899999999999999999999999999998765544566  8999999999999                        


Q ss_pred             ---------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCce
Q psy5259         213 ---------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIG  270 (294)
Q Consensus       213 ---------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~  270 (294)
                               .....+.+|++++++||+|++|||+|++|+||||+++|             ||++|||+||++||++|+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~  159 (191)
T d1gdha1          80 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA  159 (191)
T ss_dssp             CCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             ccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCce
Confidence                     11123458999999999999999999999999999999             99999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCCcCCCCC
Q psy5259         271 GAGLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       271 ga~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      ||+||||++|| +.++|||++|||
T Consensus       160 ~a~lDV~~~EP-~~~~~l~~~~nv  182 (191)
T d1gdha1         160 YAGFDVFAGEP-NINEGYYDLPNT  182 (191)
T ss_dssp             EEEESCCTTTT-SCCTTGGGCTTE
T ss_pred             EEEEECCCCCC-CCCchHHcCCCE
Confidence            99999999999 557999999996

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=1.1e-34  Score=246.53  Aligned_cols=133  Identities=24%  Similarity=0.461  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------cC------------
Q psy5259         159 AVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------EL------------  214 (294)
Q Consensus       159 ~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------~~------------  214 (294)
                      +||||+++++|++.|++.++++.+++|+|..... ...+  +++.|+++||+|+            .+            
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~-~~~~--~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADC-VSHA--YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHH-HTTC--CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCccc-CCcc--eeccccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            7999999999999999999999999999975322 1234  8899999999999            11            


Q ss_pred             ---------CCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEE
Q psy5259         215 ---------GAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGA  272 (294)
Q Consensus       215 ---------~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga  272 (294)
                               .....+|++++++||+|++|||+|++|+||||+++|             ||++||++||++||++|++.||
T Consensus        79 ~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga  158 (188)
T d2naca1          79 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGY  158 (188)
T ss_dssp             CHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEE
T ss_pred             cccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeE
Confidence                     122457999999999999999999999999999999             9999999999999999999999


Q ss_pred             EeeCCCCCCCCCCCCCcCCCCC
Q psy5259         273 GLDVMIPEPMPADHPLVQLDNC  294 (294)
Q Consensus       273 ~LDV~~~EP~~~~~~l~~~~nv  294 (294)
                      +||||++||+++++||+++|||
T Consensus       159 ~lDV~~~EP~~~~~~l~~~~nv  180 (188)
T d2naca1         159 AGDVWFPQPAPKDHPWRTMPYN  180 (188)
T ss_dssp             EESCCSSSSCCTTCGGGTSTTB
T ss_pred             EEeCCCCCCCCCCChHHcCCCe
Confidence            9999999999999999999996

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=245.10  Aligned_cols=135  Identities=29%  Similarity=0.467  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhhHhcCCCCcccc----ccccccccCcCCCEEEEEcc------------cC-------
Q psy5259         158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQT----QTVISDIIGLNGSTVGIVGT------------EL-------  214 (294)
Q Consensus       158 ~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~----~~~~g~~~~l~gktvgIiG~------------~~-------  214 (294)
                      ++|||++++++|++.|++...++.+++|.|.+...    ....|  .+|+|||+||||+            .+       
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~--~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~   78 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGA--ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY   78 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTC--CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCc--eeeeCceEEEeccccccccceeeeeccccceeec
Confidence            58999999999999999999999999999975321    11235  8999999999999            11       


Q ss_pred             ------------CCc-ccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCC
Q psy5259         215 ------------GAQ-LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKK  268 (294)
Q Consensus       215 ------------~~~-~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~  268 (294)
                                  +.. ..+|++++++||+|++|||+|++|+||||++.|             ||++|||+||+++|++|+
T Consensus        79 d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~  158 (193)
T d1mx3a1          79 DPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR  158 (193)
T ss_dssp             CTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTS
T ss_pred             cCcccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCC
Confidence                        122 347999999999999999999999999999999             999999999999999999


Q ss_pred             ceEEEeeCCCCCCCC-CCCCCcCCCCC
Q psy5259         269 IGGAGLDVMIPEPMP-ADHPLVQLDNC  294 (294)
Q Consensus       269 i~ga~LDV~~~EP~~-~~~~l~~~~nv  294 (294)
                      |+||+||||++||++ .++||+++|||
T Consensus       159 i~~a~lDV~~~EP~~~~~~~l~~~~nv  185 (193)
T d1mx3a1         159 IRGAALDVHESEPFSFSQGPLKDAPNL  185 (193)
T ss_dssp             EEEEEESCCSSSSCCTTSSTTTTCSSE
T ss_pred             ceEEEEEcCCCCCCCCCchhHHcCCCE
Confidence            999999999999987 57899999996

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-33  Score=240.53  Aligned_cols=134  Identities=28%  Similarity=0.402  Sum_probs=112.1

Q ss_pred             chHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-----------------------
Q psy5259         156 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-----------------------  212 (294)
Q Consensus       156 ~~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-----------------------  212 (294)
                      |+++||||+++++|++.|++..+++.++++.|.+..   ..+  +++.|+++||+|+                       
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~---~~~--~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~   75 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA---AGS--FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDI   75 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------C--CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc---ccc--ccccceEEEEeecccchhhhhhhcccccceEeeccc
Confidence            688999999999999999999999999999997643   234  8899999999999                       


Q ss_pred             ------cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEE
Q psy5259         213 ------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAG  273 (294)
Q Consensus       213 ------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~  273 (294)
                            .......+|+|++++||+|++|||+|++|+||||++.|             ||++|||+||+++|++|++.+|+
T Consensus        76 ~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~  155 (188)
T d1sc6a1          76 ENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAA  155 (188)
T ss_dssp             SCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEE
T ss_pred             cccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEE
Confidence                  11123458999999999999999999999999999999             99999999999999999999999


Q ss_pred             eeCCCCCCCC----CCCCCcCCCCC
Q psy5259         274 LDVMIPEPMP----ADHPLVQLDNC  294 (294)
Q Consensus       274 LDV~~~EP~~----~~~~l~~~~nv  294 (294)
                      ||||++||..    ..+||+++|||
T Consensus       156 lDV~~~EP~~~~~~~~~~l~~~~nv  180 (188)
T d1sc6a1         156 IDVFPTEPATNSDPFTSPLAEFDNV  180 (188)
T ss_dssp             EEC---------CTTTGGGTTCTTE
T ss_pred             EecCCCCCCCcCCccchhHhcCCCE
Confidence            9999999984    34689999996

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.98  E-value=4.3e-34  Score=244.91  Aligned_cols=134  Identities=26%  Similarity=0.384  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------
Q psy5259         157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------  212 (294)
Q Consensus       157 ~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------  212 (294)
                      .++||||+++++|++.|++..+++.+++|.|.+...  ..|  ++|.|||+||+|+                        
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~--~~~--~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   77 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT--FIG--KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY   77 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC--CCC--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccC--ccc--ccccceeeeeeecccccccccccccccceeeeccCCc
Confidence            478999999999999999999999999999975332  356  8999999999999                        


Q ss_pred             -----cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259         213 -----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL  274 (294)
Q Consensus       213 -----~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~L  274 (294)
                           ....++.++++++++||+|++|||+|++|+||||++.|             ||++|||+||++||++|+|.||+|
T Consensus        78 ~~~~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~l  157 (199)
T d1dxya1          78 PMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGI  157 (199)
T ss_dssp             CCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEE
T ss_pred             cchhhhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEec
Confidence                 12334569999999999999999999999999999999             999999999999999999999999


Q ss_pred             eCCCCCCCC-------------CCCCCcCCCCC
Q psy5259         275 DVMIPEPMP-------------ADHPLVQLDNC  294 (294)
Q Consensus       275 DV~~~EP~~-------------~~~~l~~~~nv  294 (294)
                      |||++||++             ..+||+++|||
T Consensus       158 DV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nv  190 (199)
T d1dxya1         158 DTYEYETEDLLNLAKHGSFKDPLWDELLGMPNV  190 (199)
T ss_dssp             SSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTE
T ss_pred             cccCCCCcchhhccccccccChhhHHHhcCCCE
Confidence            999999962             23578889996

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.98  E-value=4e-33  Score=235.33  Aligned_cols=132  Identities=21%  Similarity=0.268  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc------------------------
Q psy5259         157 SDAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT------------------------  212 (294)
Q Consensus       157 ~~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~------------------------  212 (294)
                      +++||||+++++|++.|++..+.+.+++++|.+..    ..  .+++|||+||+|+                        
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~----~~--~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~   74 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EI--PLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT   74 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CC--CCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CC--CcccCceEEEeccccccccceeeeecccccccccccc
Confidence            57999999999999999999999999999997532    12  5799999999999                        


Q ss_pred             ---cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEeeC
Q psy5259         213 ---ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGLDV  276 (294)
Q Consensus       213 ---~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~LDV  276 (294)
                         .......+|++++++||+|++|||+|++|+||||++.|             ||++||++||++||++|++.+|++||
T Consensus        75 ~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV  154 (181)
T d1qp8a1          75 PKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV  154 (181)
T ss_dssp             CCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESC
T ss_pred             ccccceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEec
Confidence               11223458999999999999999999999999999999             99999999999999999999999999


Q ss_pred             CCCC-CCCCCCCCcCCCCC
Q psy5259         277 MIPE-PMPADHPLVQLDNC  294 (294)
Q Consensus       277 ~~~E-P~~~~~~l~~~~nv  294 (294)
                      |++| |++.++||+++|||
T Consensus       155 ~~~e~p~~~~~~l~~~~nv  173 (181)
T d1qp8a1         155 WWGRNDFAKDAEFFSLPNV  173 (181)
T ss_dssp             CTTTTCCGGGHHHHTSTTE
T ss_pred             CCCCCCCCCCChHHcCCCE
Confidence            9865 56778999999996

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.98  E-value=2.1e-33  Score=240.02  Aligned_cols=132  Identities=26%  Similarity=0.282  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhhhHhcCCCCccccccccccccCcCCCEEEEEcc-------------------------
Q psy5259         158 DAVAEFNIGLAIAVSRRFQQGHNCIASGEWALKQTQTVISDIIGLNGSTVGIVGT-------------------------  212 (294)
Q Consensus       158 ~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~~~~~~~~g~~~~l~gktvgIiG~-------------------------  212 (294)
                      ++||||+++++|++.|++..+++.+++++|.. ..  ..|  ++|+||||||||+                         
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w-~~--~~g--~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRW-AP--TIG--REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCC-TT--CCB--CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCc-CC--CcC--ccccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            68999999999999999999999999998853 22  356  8999999999999                         


Q ss_pred             -----cCCCcccCHHHHhccCCEEEEecCCCcccccccccccc-------------cCcCCCHHHHHHHHHcCCceEEEe
Q psy5259         213 -----ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQF-------------RGGLLDQEALVEFLRDKKIGGAGL  274 (294)
Q Consensus       213 -----~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~-------------RG~lvde~aL~~aL~~g~i~ga~L  274 (294)
                           ..+....+|++++++||+|++|||+|++|+||||++.|             ||++|||+||++||++|+|+||+|
T Consensus        77 ~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~l  156 (197)
T d1j4aa1          77 NPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM  156 (197)
T ss_dssp             CHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEE
T ss_pred             ccccccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheee
Confidence                 12334568999999999999999999999999999999             999999999999999999999999


Q ss_pred             eCCCCCCC-------------CCCCCCcCCCCC
Q psy5259         275 DVMIPEPM-------------PADHPLVQLDNC  294 (294)
Q Consensus       275 DV~~~EP~-------------~~~~~l~~~~nv  294 (294)
                      |||++||.             +.++||+++|||
T Consensus       157 DV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nv  189 (197)
T d1j4aa1         157 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNV  189 (197)
T ss_dssp             SCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTE
T ss_pred             eccccCCcccccccccccCCccchhhhhcCCCE
Confidence            99999963             334678888886

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=2.9e-26  Score=182.99  Aligned_cols=128  Identities=23%  Similarity=0.296  Sum_probs=111.8

Q ss_pred             CCCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           2 SKPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         2 ~k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      +|||||++++ ++  ++.++.|++.|++...+.    .+++++.+.++++|++++++..++++++|+.+ |+||+|++++
T Consensus         1 sMpkvli~~~-~~--~~~~~~L~~~~~v~~~~~----~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~g   72 (130)
T d1ygya2           1 SLPVVLIADK-LA--PSTVAALGDQVEVRWVDG----PDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAG   72 (130)
T ss_dssp             CCCEEEECSS-CC--GGGGTTSCSSSEEEECCT----TSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESS
T ss_pred             CCCEEEEECC-CC--HHHHHHHhCCcEEEECCC----CCHHHHHHHcCCCEEEEEcCcccchHHHHhhc-ccceEEeeec
Confidence            5899999994 88  999999999999988754    58899999999999999987789999999986 7888888888


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA  161 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA  161 (294)
                      +|||+||+++|+++||.|+|+                                                  |++++.+||
T Consensus        73 ~G~d~IDl~~~~~~gI~V~n~--------------------------------------------------p~~~~~~VA  102 (130)
T d1ygya2          73 VGLDNVDVDAATARGVLVVNA--------------------------------------------------PTSASTAEA  102 (130)
T ss_dssp             SCCTTBCHHHHHHTTCEEECC--------------------------------------------------TTSSCBHHH
T ss_pred             ccccchhHHHHHHCCceEEec--------------------------------------------------CCCCcHHHH
Confidence            888888777777777666666                                                  888899999


Q ss_pred             HHHHHHHHHHhcCchhhhhhHhcCCC
Q psy5259         162 EFNIGLAIAVSRRFQQGHNCIASGEW  187 (294)
Q Consensus       162 E~al~l~l~~~r~~~~~~~~~~~~~w  187 (294)
                      |++++++|+++|++..+.+.+|+|.|
T Consensus       103 E~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2         103 QDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             HHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            99999999999999999988888887

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.90  E-value=9.8e-24  Score=167.94  Aligned_cols=110  Identities=35%  Similarity=0.507  Sum_probs=100.8

Q ss_pred             CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSV   82 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~   82 (294)
                      |||||++.+ +|  ++.+++|++.|+++.++... ..+.+++.+.++++|++++++..++++++|++++++||+|+++++
T Consensus         1 K~kVlit~~-~~--~~~~~~l~~~~~v~~~~~~~-~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gv   76 (129)
T d1gdha2           1 KKKILITWP-LP--EAAMARARESYDVIAHGDDP-KITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (129)
T ss_dssp             CCEEEESSC-CC--HHHHHHHHTTSEEEECCSTT-CCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CCEEEEeCC-CC--HHHHHHHHcCCcEEEeCCCC-CCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeeccc
Confidence            799999995 98  99999999999998776543 679999999999999999887789999999998668999999999


Q ss_pred             cCcccChhhHhhCCcEEeecCCCChhhhhhhhHH
Q psy5259          83 GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIG  116 (294)
Q Consensus        83 G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~  116 (294)
                      |+||||++.++++||+|+|+||+++++|||+++.
T Consensus        77 G~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~  110 (129)
T d1gdha2          77 GFDHIDLDACKARGIKVGNAPHGATQAREDMAHQ  110 (129)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHH
T ss_pred             CCccccHHHHHhCCCEEEECCCCCchHHHHHHHH
Confidence            9999999999999999999999999999997654

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.4e-21  Score=155.80  Aligned_cols=105  Identities=20%  Similarity=0.333  Sum_probs=83.4

Q ss_pred             CCCeEEEecCCCCCCchhHHHhhcc-ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEec
Q psy5259           2 SKPKLLLTRNDYPRVSPAYDILEDM-FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTF   80 (294)
Q Consensus         2 ~k~kvl~~~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~   80 (294)
                      .|||||+++ +++  +..++.|++. ++++.+...  ..+++++.+.++++|++++++..++++++|+.+ |+||+|+++
T Consensus         3 ~kmKILv~d-~i~--~~a~~~L~~~g~~~v~~~~~--~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~-p~Lk~I~~~   76 (132)
T d1sc6a2           3 DKIKFLLVE-GVH--QKALESLRAAGYTNIEFHKG--ALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAF   76 (132)
T ss_dssp             SSCCEEECS-CCC--HHHHHHHHHTTCCCEEECSS--CCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEEC
T ss_pred             CCCEEEEEC-CCC--HHHHHHHHhCCCEEEEeCCC--CCCHHHHHHhhcCCcEEEEecccccChhhhhcc-ccceeEEEe
Confidence            489999999 488  9999999984 444333332  478999999999999999987889999999987 889999998


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhh
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE  112 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae  112 (294)
                      |+|||+||+++|+++||.|+|+||+++++|||
T Consensus        77 gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe  108 (132)
T d1sc6a2          77 AIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQE  108 (132)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCTTTCSHHHHH
T ss_pred             cccccccCHHHHHhCCCEEEECCCCchhHHHH
Confidence            88888888888888888887774444433333

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.83  E-value=4.9e-21  Score=152.52  Aligned_cols=125  Identities=13%  Similarity=0.114  Sum_probs=93.0

Q ss_pred             CeEEEecCCCCCCchhHHHhhc--cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhc-CCCceEEEec
Q psy5259           4 PKLLLTRNDYPRVSPAYDILED--MFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDES-GENLKVISTF   80 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~--~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~-~~~lk~i~~~   80 (294)
                      |||++.+. .+.-.+.++++.+  .+++...+.    ...++..+.++++|+++++...++++++|+.+ .++||+|+++
T Consensus         1 MKIl~~~~-~~~e~~~l~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~   75 (131)
T d1dxya2           1 MKIIAYGA-RVDEIQYFKQWAKDTGNTLEYHTE----FLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (131)
T ss_dssp             CEEEECSC-CTTTHHHHHHHHHHHCCEEEECSS----CCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEec-CcCcHHHHHHHHHHcCeEEEEcCC----CCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEc
Confidence            67998763 4433566777765  567766654    23467788899999999887789999999975 2467777777


Q ss_pred             cccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHH
Q psy5259          81 SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAV  160 (294)
Q Consensus        81 ~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~V  160 (294)
                      ++||||||+++++++||.|+|+                                                  |++++++|
T Consensus        76 ~vG~d~ID~~~a~~~gI~V~n~--------------------------------------------------P~~~~~aV  105 (131)
T d1dxya2          76 NVGTDNIDMTAMKQYGIRLSNV--------------------------------------------------PAYTETAV  105 (131)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECC--------------------------------------------------TTSSHHHH
T ss_pred             ccccccccccccccceEEEEeC--------------------------------------------------CCCCchhH
Confidence            7777777777777666666666                                                  77888888


Q ss_pred             HHHHHHHHHHHhcCchhhhhhHh
Q psy5259         161 AEFNIGLAIAVSRRFQQGHNCIA  183 (294)
Q Consensus       161 AE~al~l~l~~~r~~~~~~~~~~  183 (294)
                      ||++++++|++.|++..+++.++
T Consensus       106 AE~~~~~~l~l~R~l~~~~~~~e  128 (131)
T d1dxya2         106 HNMVYFSLQHLVDFLTKGETSTE  128 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTE
T ss_pred             HHHHHHHHHHHHcchHHHHhhcc
Confidence            88888888888888887776544

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.76  E-value=5.6e-19  Score=140.49  Aligned_cols=125  Identities=18%  Similarity=0.225  Sum_probs=97.2

Q ss_pred             CCeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHH-HccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecc
Q psy5259           3 KPKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIE-KLKGCSALLCNPHQKVDKEALDESGENLKVISTFS   81 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~-~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~   81 (294)
                      +|+|++.+. .+ ....++.|++..++.+++..    +.+++.+ .+.+++++++++..++++++|+.+ |+||+|++++
T Consensus         1 mP~v~~ld~-~d-~~~e~~~L~~~~~v~~~~~~----s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~-~~Lk~I~~~g   73 (133)
T d1mx3a2           1 MPLVALLDG-RD-CTVEMPILKDVATVAFCDAQ----STQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIG   73 (133)
T ss_dssp             CCEEEESSC-SC-CTTTHHHHTTTCEEEECCCS----SGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESS
T ss_pred             CCEEEEecC-Cc-chhhHHHhcccceEEEecCC----ChHHHHHHHhccCcEEEEEeCCCcCHHHHhhC-CCCeEEEEcC
Confidence            588888883 43 34568889998899887653    3444444 456788888887889999999987 8888888888


Q ss_pred             ccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHH
Q psy5259          82 VGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVA  161 (294)
Q Consensus        82 ~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VA  161 (294)
                      +|+||||+++|+++||.|+|+                                                  |+++. ++|
T Consensus        74 ~G~d~iD~~~~~~~gI~v~n~--------------------------------------------------p~~~~-~vA  102 (133)
T d1mx3a2          74 SGFDNIDIKSAGDLGIAVCNV--------------------------------------------------PAASV-YSE  102 (133)
T ss_dssp             SCCTTBCHHHHHHTTCEEECC--------------------------------------------------CSTTH-CCH
T ss_pred             CCcccEeeeeheeCCEEEEcC--------------------------------------------------CCCCc-hhH
Confidence            888888888888777777766                                                  77766 469


Q ss_pred             HHHHHHHHHHhcCchhhhhhHhcCCCCc
Q psy5259         162 EFNIGLAIAVSRRFQQGHNCIASGEWAL  189 (294)
Q Consensus       162 E~al~l~l~~~r~~~~~~~~~~~~~w~~  189 (294)
                      ||+++++|++.|++.+..+    |.|.+
T Consensus       103 E~a~~lil~~~R~i~~a~~----g~~~~  126 (133)
T d1mx3a2         103 QASIEMREEAAREIRRAIT----GRIPD  126 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----SCTTT
T ss_pred             HHHHHHHHHHHhhHHHHHh----ccccc
Confidence            9999999999999988765    66654

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.75  E-value=1.2e-18  Score=144.20  Aligned_cols=115  Identities=19%  Similarity=0.271  Sum_probs=90.1

Q ss_pred             HHHhhc-cceEEEcCCCCCCCCHHHHHHHccCCcEEEeCC--CCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCC
Q psy5259          20 YDILED-MFDIITYPISEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRG   96 (294)
Q Consensus        20 ~~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~g   96 (294)
                      .+.|++ +++++...+.  ..+.+++.+.+.++|++++++  ..++++|+|+.+ |+||+|+++++|+||||+++++++|
T Consensus        60 r~~Le~~GhelV~~sd~--~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~a-p~LKlI~~~g~G~D~VDl~aa~e~g  136 (186)
T d2naca2          60 RKYLESNGHTLVVTSDK--DGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRN  136 (186)
T ss_dssp             HHHHHHTTCEEEEESCC--SSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTT
T ss_pred             HHHHHHCCCEEEEecCC--CCChHHHHhhcccCCEEEEecccccccCHHHHhcC-ccceEEEEeccCCccccHHHHHhCC
Confidence            344555 7899887665  356678899999999999974  468999999987 8888888888888888888888777


Q ss_pred             cEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHH--------HHHH
Q psy5259          97 IRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN--------IGLA  168 (294)
Q Consensus        97 I~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~a--------l~l~  168 (294)
                      |.|+|+                                                  +++|+.+||||+        +.++
T Consensus       137 I~V~n~--------------------------------------------------pg~n~~SVAEha~~~~~~~~i~~i  166 (186)
T d2naca2         137 VTVAEV--------------------------------------------------TYCNSTTLTAQARYAAGTREILEC  166 (186)
T ss_dssp             CEEEEC--------------------------------------------------TTTTHCSHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEC--------------------------------------------------CCcCcHHHHHHHHHHHHHHHHHHH
Confidence            777777                                                  555555555565        5567


Q ss_pred             HHHhcCchhhhhhHhcCCC
Q psy5259         169 IAVSRRFQQGHNCIASGEW  187 (294)
Q Consensus       169 l~~~r~~~~~~~~~~~~~w  187 (294)
                      +...|++...+..+++|+|
T Consensus       167 l~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         167 FFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HHHTCCCCGGGEEEETTEE
T ss_pred             HHhccchhhhhhhhhcccc
Confidence            7778999888888888887

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.69  E-value=1e-17  Score=133.51  Aligned_cols=118  Identities=13%  Similarity=0.114  Sum_probs=83.0

Q ss_pred             CeEEEecCCCCCCchhHHHhhc-c--ceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhc-CCCceEEEe
Q psy5259           4 PKLLLTRNDYPRVSPAYDILED-M--FDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDES-GENLKVIST   79 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~-~--~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~-~~~lk~i~~   79 (294)
                      .||++.+. .+.=.+.++++.+ .  +++...+.   .. .+++.+.++++|++++++..++++++|+.+ .++||+|++
T Consensus         1 ~KI~~f~~-~~~e~~~~e~~~~~~~~v~v~~~~~---~~-~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~   75 (134)
T d1j4aa2           1 TKIFAYAI-REDEKPFLKEWEDAHKDVEVEYTDK---LL-TPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSL   75 (134)
T ss_dssp             CEEEECSC-CGGGHHHHHHHHHTCTTSEEEECSS---CC-CTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEec-ccccHHHHHHHHHhCCCEEEEECCC---CC-CHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEE
Confidence            37888653 3211344555554 3  35555443   23 366788999999999988889999999975 346788888


Q ss_pred             ccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHH
Q psy5259          80 FSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDA  159 (294)
Q Consensus        80 ~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~  159 (294)
                      +++||||||+++++++||.|||+                                                  |++   +
T Consensus        76 ~~vG~d~ID~~aa~~~gI~V~N~--------------------------------------------------P~~---s  102 (134)
T d1j4aa2          76 RNVGVDNIDMAKAKELGFQITNV--------------------------------------------------PVY---S  102 (134)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECC--------------------------------------------------CCS---C
T ss_pred             ccCCcCccCHHHHHhCCeEEEEC--------------------------------------------------CCC---c
Confidence            88888777777777777766666                                                  655   4


Q ss_pred             HHHHHHHHHHHHhcCchhhh
Q psy5259         160 VAEFNIGLAIAVSRRFQQGH  179 (294)
Q Consensus       160 VAE~al~l~l~~~r~~~~~~  179 (294)
                      |||+++++|+++.|++....
T Consensus       103 vae~a~~~ml~l~r~~~~~~  122 (134)
T d1j4aa2         103 YTTHAVRNMVVKAFDNNLEL  122 (134)
T ss_dssp             CBHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHH
Confidence            78899999999988764433

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.58  E-value=4.1e-16  Score=121.88  Aligned_cols=100  Identities=22%  Similarity=0.302  Sum_probs=87.9

Q ss_pred             CeEEEecCCCCCCchhHHHhhccceEEEcCCCCCCCCHHHHHHHccCCcEEEeCCCCCCCHHHHhhcCCCceEEEecccc
Q psy5259           4 PKLLLTRNDYPRVSPAYDILEDMFDIITYPISEGRMPRDIFIEKLKGCSALLCNPHQKVDKEALDESGENLKVISTFSVG   83 (294)
Q Consensus         4 ~kvl~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~e~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G   83 (294)
                      |||+++. ++|  ++..+.+++.++++...             .++++|+++++   ++++++|+++ |+||+|+++++|
T Consensus         1 Mki~v~~-~lp--~e~~e~L~~~~~v~~~~-------------d~~~~d~~l~~---~~~~~~l~~~-~~Lk~i~~~~aG   60 (121)
T d1qp8a2           1 MELYVNF-ELP--PEAEEELRKYFKIVRGG-------------DLGNVEAALVS---RITAEELAKM-PRLKFIQVVTAG   60 (121)
T ss_dssp             CEEECCS-CCC--HHHHHHHHTTCEEECSS-------------CCTTBCCCCBS---CCCHHHHHHC-TTCCCEEBSSSC
T ss_pred             CEEEEeC-CCC--HHHHHHhhhcceEeecc-------------cccccceeeee---ccCHHHHhcC-CCceEEEecccC
Confidence            6899999 599  99999999999887432             25678887765   7999999997 899999999999


Q ss_pred             CcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHc-cCc
Q psy5259          84 HDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAV-KNL  124 (294)
Q Consensus        84 ~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~-~~L  124 (294)
                      +||+|.+.++ ++|.++|++|+++.+|||++++++++. |+|
T Consensus        61 ~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~l  101 (121)
T d1qp8a2          61 LDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRNL  101 (121)
T ss_dssp             CTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCCE
Confidence            9999999996 699999999999999999999999887 665

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.35  E-value=3.8e-12  Score=100.01  Aligned_cols=103  Identities=20%  Similarity=0.363  Sum_probs=72.2

Q ss_pred             HHHHHHc-cCCcEEEeCCCCCCCHHHHhhcCCCceEEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHH
Q psy5259          42 DIFIEKL-KGCSALLCNPHQKVDKEALDESGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIA  120 (294)
Q Consensus        42 e~~~~~l-~~~d~~~~~~~~~~~~~~l~~~~~~lk~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~  120 (294)
                      ++.++.+ +.+|+++......++++.|.+.-++...|-+  .+-+.+|.+.++                          +
T Consensus        12 ~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~--~~~~~i~~~~l~--------------------------~   63 (129)
T d1gdha2          12 EAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLI--TLNEKCRKEVID--------------------------R   63 (129)
T ss_dssp             HHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEE--ETTSCBCHHHHH--------------------------H
T ss_pred             HHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEE--cCCchhhhHHHh--------------------------h
Confidence            4555566 4578777665567776655433244443322  122344444444                          5


Q ss_pred             cc-CcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHh
Q psy5259         121 VK-NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVS  172 (294)
Q Consensus       121 ~~-~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~  172 (294)
                      ++ +||+|+++|+|+|++|+++++++||+|+|+||+++++|||+++++|+.+.
T Consensus        64 ~~~~LK~I~~~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~  116 (129)
T d1gdha2          64 IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLID  116 (129)
T ss_dssp             SCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHH
T ss_pred             hhhcceeeeecccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHH
Confidence            54 89999999999999999999999999999999999999997665544433

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.89  E-value=2e-10  Score=88.92  Aligned_cols=59  Identities=17%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             HHHHccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCch
Q psy5259         117 LAIAVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ  176 (294)
Q Consensus       117 ~~l~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~  176 (294)
                      .+.++++||||+..++|+|++|++.++ +|+.|+|++|.++.+||||+++++|++.|++.
T Consensus        44 ~l~~~~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~l~  102 (121)
T d1qp8a2          44 ELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRNLI  102 (121)
T ss_dssp             HHHHCTTCCCEEBSSSCCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCceEEEecccCcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCCEE
Confidence            344789999999999999999999985 69999999999999999999999999998653

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=2.1e-05  Score=60.78  Aligned_cols=64  Identities=22%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCchHHHHHHHHHHHHHHhcCchhhhhhHhcC
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASG  185 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~~~VAE~al~l~l~~~r~~~~~~~~~~~~  185 (294)
                      ++++||+|.++|+|+|+||+++|+++||.|+|+|++++.+|||+++.||+  .|++..+++..+.+
T Consensus        66 ~~p~Lk~I~~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~~~~~~  129 (132)
T d1sc6a2          66 AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDNGSTLS  129 (132)
T ss_dssp             HCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHHCCCTT
T ss_pred             ccccceeEEEecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhCcCccc
Confidence            67999999999999999999999999999999999999999998655543  45555555544333

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.76  E-value=3.7e-05  Score=62.38  Aligned_cols=30  Identities=37%  Similarity=0.555  Sum_probs=29.4

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEE
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      ++++||+|.+.++|+||+|+++|+++||.|
T Consensus       110 ~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V  139 (186)
T d2naca2         110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTV  139 (186)
T ss_dssp             HCTTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             cCccceEEEEeccCCccccHHHHHhCCCEE
Confidence            789999999999999999999999999999

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.74  E-value=2.8e-05  Score=59.79  Aligned_cols=57  Identities=18%  Similarity=0.308  Sum_probs=41.1

Q ss_pred             cCcceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHHhcCchhhhhhHhcCC
Q psy5259         122 KNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAVSRRFQQGHNCIASGE  186 (294)
Q Consensus       122 ~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~~r~~~~~~~~~~~~~  186 (294)
                      .+||+|...|+|+|++|+++|+++||.|     .|. ...++-+.=+.++++-.+   .+.+..+.
T Consensus        67 ~~Lk~I~~~~vG~d~ID~~~a~~~gI~V-----~n~P~~~~~aVAE~~~~~~l~l---~R~l~~~~  124 (131)
T d1dxya2          67 YGIKFLTIRNVGTDNIDMTAMKQYGIRL-----SNVPAYTETAVHNMVYFSLQHL---VDFLTKGE  124 (131)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEE-----ECCTTSSHHHHHHHHHHHHHHH---HHHHHHSC
T ss_pred             CCeEEEEEcccccccccccccccceEEE-----EeCCCCCchhHHHHHHHHHHHH---HcchHHHH
Confidence            4899999999999999999999999999     344 345555555666554333   34444444

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.69  E-value=2.6e-05  Score=60.37  Aligned_cols=30  Identities=27%  Similarity=0.495  Sum_probs=28.9

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEE
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      ++++||+|.+.++|+|++|+++|+++||.|
T Consensus        62 ~~~~Lk~I~~~g~G~d~iD~~~~~~~gI~v   91 (133)
T d1mx3a2          62 KFKALRIIVRIGSGFDNIDIKSAGDLGIAV   91 (133)
T ss_dssp             TCSSCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             hCCCCeEEEEcCCCcccEeeeeheeCCEEE
Confidence            669999999999999999999999999998

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.57  E-value=6.9e-05  Score=57.84  Aligned_cols=28  Identities=21%  Similarity=0.444  Sum_probs=27.0

Q ss_pred             cCcceEEEeeccccccccchhhccCcEE
Q psy5259         122 KNLKVISTFSVGHDHLHLDQIKSRGIRV  149 (294)
Q Consensus       122 ~~Lk~i~~~~~G~d~id~~~~~~~GI~v  149 (294)
                      .+||+|++.++|+|++|++++.++||.|
T Consensus        68 ~~LK~I~~~~vG~d~ID~~aa~~~gI~V   95 (134)
T d1j4aa2          68 NGITKMSLRNVGVDNIDMAKAKELGFQI   95 (134)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             cCeeEEEEccCCcCccCHHHHHhCCeEE
Confidence            4799999999999999999999999999

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=3.2e-05  Score=59.46  Aligned_cols=63  Identities=21%  Similarity=0.331  Sum_probs=46.8

Q ss_pred             HccCcceEEEeeccccccccchhhccCcEEEeeCCCch-HHHHHHHHHHHHHHhcCchhhhhhHhcCCCCc
Q psy5259         120 AVKNLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSS-DAVAEFNIGLAIAVSRRFQQGHNCIASGEWAL  189 (294)
Q Consensus       120 ~~~~Lk~i~~~~~G~d~id~~~~~~~GI~v~~~~~~~~-~~VAE~al~l~l~~~r~~~~~~~~~~~~~w~~  189 (294)
                      ++++||+|++.|+|+|++|+++|+++||.|     .+. ...++-+.=+.+++  -+....+....++|.+
T Consensus        61 ~~p~Lk~I~~~g~G~d~IDl~~~~~~gI~V-----~n~p~~~~~~VAE~~~~l--~L~l~R~i~~a~~~vr  124 (130)
T d1ygya2          61 AAPKLKIVARAGVGLDNVDVDAATARGVLV-----VNAPTSASTAEAQDRAGT--DVAESVRLALAGEFVP  124 (130)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHTTCEE-----ECCTTSSCBHHHHHHHHH--HHHHHHHHHHTTCCCT
T ss_pred             hcccceEEeeecccccchhHHHHHHCCceE-----EecCCCCcHHHHHHHHHH--HHHHHhhHHHHhhhcc
Confidence            569999999999999999999999999999     444 34455555555544  3444555566778865

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00012  Score=58.32  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ..+.||+++|+||                                ..+.+..+++++++.||+|+.+.    .++++|++
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI~~   95 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDIILG   95 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSBCH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccchhH
Confidence            6789999999999                                34667779999999999887653    48899999


Q ss_pred             ccc--------------cCcCCCHHHHHHHHHcCCceEEEeeCCC
Q psy5259         248 KQF--------------RGGLLDQEALVEFLRDKKIGGAGLDVMI  278 (294)
Q Consensus       248 ~~~--------------RG~lvde~aL~~aL~~g~i~ga~LDV~~  278 (294)
                      +.|              +..-||-++|.+...+.+.....+|.|+
T Consensus        96 eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          96 RHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             HHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            999              7777999998875544433334455443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.96  E-value=0.041  Score=43.02  Aligned_cols=47  Identities=23%  Similarity=0.379  Sum_probs=40.0

Q ss_pred             cCcCCCEEEEEcc--------------------------------cCCCcccCHHHHhccCCEEEEecCCCccccccccc
Q psy5259         200 IGLNGSTVGIVGT--------------------------------ELGAQLVPLDTLCAQSDFIFVTCALTKDTEQLIGR  247 (294)
Q Consensus       200 ~~l~gktvgIiG~--------------------------------~~~~~~~~l~ell~~sDvV~l~~p~t~~T~~li~~  247 (294)
                      ..+.||++.++||                                ..+++..+++|+++.+|+++.+..    +++.|+.
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG----n~~vI~~   94 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG----NVDVIKL   94 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS----SSSSBCH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC----CCccccH
Confidence            4689999999999                                446778899999999999998877    4458888


Q ss_pred             ccc
Q psy5259         248 KQF  250 (294)
Q Consensus       248 ~~~  250 (294)
                      ++|
T Consensus        95 ~h~   97 (163)
T d1v8ba1          95 EHL   97 (163)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            888

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.78  E-value=0.04  Score=43.65  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             cCcCCCEEEEEcc---------------------------------cCCCcccCHHHHhccCCEEEEecC
Q psy5259         200 IGLNGSTVGIVGT---------------------------------ELGAQLVPLDTLCAQSDFIFVTCA  236 (294)
Q Consensus       200 ~~l~gktvgIiG~---------------------------------~~~~~~~~l~ell~~sDvV~l~~p  236 (294)
                      .-+++|+|+||||                                 +.|.+..+++|..+.||+|.+.+|
T Consensus        12 ~~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~P   81 (182)
T d1np3a2          12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTP   81 (182)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSC
T ss_pred             HHHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecc
Confidence            3578999999999                                 446677899999999999999999

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=90.34  E-value=2.2  Score=32.78  Aligned_cols=116  Identities=10%  Similarity=0.075  Sum_probs=65.8

Q ss_pred             CCeEEEecCCCCCCchhHHH----hhc-cceEEEcCCCCCCCCHHHHHHHc--cCCcEEEeCCCCCCCHHHHhhcCCCce
Q psy5259           3 KPKLLLTRNDYPRVSPAYDI----LED-MFDIITYPISEGRMPRDIFIEKL--KGCSALLCNPHQKVDKEALDESGENLK   75 (294)
Q Consensus         3 k~kvl~~~~~~~~~~~~~~~----l~~-~~~v~~~~~~~~~~~~e~~~~~l--~~~d~~~~~~~~~~~~~~l~~~~~~lk   75 (294)
                      +||||+..............    |+. +|||+....   ..+.|++.+..  .++|++..++......+...+.     
T Consensus        37 ~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~---~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l-----  108 (168)
T d7reqa2          37 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPL---FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPAL-----  108 (168)
T ss_dssp             CCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCT---TBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHH-----
T ss_pred             CCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCC---cCcHHHHHHHHHccCCCEEEEecCcccchHHHHHH-----
Confidence            68888866422222333333    333 799987655   46889998776  4689888775433333333322     


Q ss_pred             EEEeccccCcccChhhHhhCCcEEeecCCCChhhhhhhhHHHHHHccCcceEEEeecc-ccccccchhhccCcEEEeeCC
Q psy5259          76 VISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVKNLKVISTFSVG-HDHLHLDQIKSRGIRVGTVGP  154 (294)
Q Consensus        76 ~i~~~~~G~d~id~~~~~~~gI~v~~~~~~~~~~vae~~~~~~l~~~~Lk~i~~~~~G-~d~id~~~~~~~GI~v~~~~~  154 (294)
                                   .+.++++|.                        ++..+   ...| +-.-|.+.+.+.|+.-...||
T Consensus       109 -------------~~~L~~~g~------------------------~~v~V---ivGG~ip~~d~~~l~~~Gv~~iF~pg  148 (168)
T d7reqa2         109 -------------RKELDKLGR------------------------PDILI---TVGGVIPEQDFDELRKDGAVEIYTPG  148 (168)
T ss_dssp             -------------HHHHHHTTC------------------------TTSEE---EEEESCCGGGHHHHHHHTEEEEECTT
T ss_pred             -------------HHHHHhcCC------------------------CCeEE---EEeCCCCHHHHHHHHhCCCCEEECcC
Confidence                         122333321                        22222   1222 245667778889988778888


Q ss_pred             CchHHHHHHHHH
Q psy5259         155 VSSDAVAEFNIG  166 (294)
Q Consensus       155 ~~~~~VAE~al~  166 (294)
                      .....+|...+-
T Consensus       149 t~~~e~a~~~~~  160 (168)
T d7reqa2         149 TVIPESAISLVK  160 (168)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            776555555444

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.45  E-value=0.12  Score=39.64  Aligned_cols=27  Identities=11%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             cCHHHHhccCCEEEEecCCCccccccc
Q psy5259         219 VPLDTLCAQSDFIFVTCALTKDTEQLI  245 (294)
Q Consensus       219 ~~l~ell~~sDvV~l~~p~t~~T~~li  245 (294)
                      .+.+|+.++||+|++++|-.++.+.++
T Consensus        48 ~~~~e~~~~~d~ii~~v~~~~~v~~v~   74 (161)
T d1vpda2          48 STAKAIAEQCDVIITMLPNSPHVKEVA   74 (161)
T ss_dssp             SSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             ccHHHHHhCCCeEEEEcCCHHHHHHHH
Confidence            478999999999999999888877765

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.96  E-value=1.2  Score=33.81  Aligned_cols=48  Identities=19%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             ccCHHHHhccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcCCceE--EEeeCCC
Q psy5259         218 LVPLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGG--AGLDVMI  278 (294)
Q Consensus       218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g~i~g--a~LDV~~  278 (294)
                      +.++.+.+.++|+|+.+.+   ....+          |+.+.+..+++..+...  ..+|.--
T Consensus        75 ~~~~~~~l~~~Divi~ats---s~~~i----------i~~~~i~~~~~~r~~~~~~~iiDlav  124 (159)
T d1gpja2          75 FDELVDHLARSDVVVSATA---APHPV----------IHVDDVREALRKRDRRSPILIIDIAN  124 (159)
T ss_dssp             GGGHHHHHHTCSEEEECCS---SSSCC----------BCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             chhHHHHhccCCEEEEecC---CCCcc----------ccHhhhHHHHHhcccCCCeEEEeecC
Confidence            3467788889999999977   33444          56666666766544322  6788743

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.77  E-value=0.19  Score=38.46  Aligned_cols=29  Identities=10%  Similarity=0.051  Sum_probs=24.3

Q ss_pred             ccCHHHHhccCCEEEEecCCCcccccccc
Q psy5259         218 LVPLDTLCAQSDFIFVTCALTKDTEQLIG  246 (294)
Q Consensus       218 ~~~l~ell~~sDvV~l~~p~t~~T~~li~  246 (294)
                      ..++.|++..+|+|++++|..+..+.++.
T Consensus        48 ~~~~~e~~~~~diii~~v~~~~~~~~v~~   76 (162)
T d3cuma2          48 ARSARDAVQGADVVISMLPASQHVEGLYL   76 (162)
T ss_dssp             CSSHHHHHTSCSEEEECCSCHHHHHHHHH
T ss_pred             cchhhhhccccCeeeecccchhhHHHHHh
Confidence            34789999999999999998887776654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.23  E-value=0.13  Score=40.67  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=42.1

Q ss_pred             ChhhhhhhhHHHHHHc-cCcceEEEeecc--ccccccchhhccCcEEEeeC-CCchHHHHHHHHHHHHHHhcCchhhh
Q psy5259         106 SSDAVAEFNIGLAIAV-KNLKVISTFSVG--HDHLHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGLAIAVSRRFQQGH  179 (294)
Q Consensus       106 ~~~~vae~~~~~~l~~-~~Lk~i~~~~~G--~d~id~~~~~~~GI~v~~~~-~~~~~~VAE~al~l~l~~~r~~~~~~  179 (294)
                      |+++|||+++++++.+ |++...+....-  .+.......+-+|..|...+ |..+..+|+++.++    ..++..+.
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~f----g~~v~~~d   74 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL----GMYVYFYD   74 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHT----TCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccc----cceEeecc
Confidence            6899999999999887 887554322111  11112222334677777766 78888888876543    44444444

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=83.68  E-value=0.37  Score=39.13  Aligned_cols=40  Identities=10%  Similarity=0.157  Sum_probs=26.6

Q ss_pred             CHHHHhccCCEEEEecCCCcccccccccccccCcCCCHHHHHHHHHcCCceEE
Q psy5259         220 PLDTLCAQSDFIFVTCALTKDTEQLIGRKQFRGGLLDQEALVEFLRDKKIGGA  272 (294)
Q Consensus       220 ~l~ell~~sDvV~l~~p~t~~T~~li~~~~~RG~lvde~aL~~aL~~g~i~ga  272 (294)
                      +.+|..+.||+|.+.+|-..+           .++. + .+...|+.|...+.
T Consensus       104 ~v~EAv~~ADiVmiLlPDe~Q-----------~~vy-~-~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         104 DMWETISGSDLVLLLISDSAQ-----------ADNY-E-KVFSHMKPNSILGL  143 (226)
T ss_dssp             EHHHHHHTCSEEEECSCHHHH-----------HHHH-H-HHHHHSCTTCEEEE
T ss_pred             CHHHHHhhCCEEEEecchHHH-----------HHHH-H-HHHHhcCCCceeee
Confidence            577999999999999993222           2334 2 36666777765543

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=81.23  E-value=5.4  Score=29.22  Aligned_cols=55  Identities=16%  Similarity=0.295  Sum_probs=36.1

Q ss_pred             CCCCeEEEecCCCCCCchhH----HHhhc-cceEEEcCCCCCCCCHHHHHHHcc--CCcEEEeCC
Q psy5259           1 MSKPKLLLTRNDYPRVSPAY----DILED-MFDIITYPISEGRMPRDIFIEKLK--GCSALLCNP   58 (294)
Q Consensus         1 m~k~kvl~~~~~~~~~~~~~----~~l~~-~~~v~~~~~~~~~~~~e~~~~~l~--~~d~~~~~~   58 (294)
                      |.|+||+++.+.-....-..    ..|+. +++|++...   ..+.+++++.+.  ++|++..+.
T Consensus         1 ~~k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~---~~p~e~iv~a~~~~~~d~v~lS~   62 (137)
T d1ccwa_           1 MEKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGV---LSPQELFIKAAIETKADAILVSS   62 (137)
T ss_dssp             CCCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEE---EECHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEeccc---ccCHHHHHHHHHhcCCCEEEEee
Confidence            78999999765222223222    22333 799998765   468899988764  588888763

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=80.94  E-value=0.28  Score=38.57  Aligned_cols=77  Identities=21%  Similarity=0.242  Sum_probs=49.2

Q ss_pred             hhhhhhhhHHHHHHc-cCcceEEEeeccccccc-cchhhccCcEEEeeC-CCchHHHHHHHHHHHHHHhcCchhhhhhHh
Q psy5259         107 SDAVAEFNIGLAIAV-KNLKVISTFSVGHDHLH-LDQIKSRGIRVGTVG-PVSSDAVAEFNIGLAIAVSRRFQQGHNCIA  183 (294)
Q Consensus       107 ~~~vae~~~~~~l~~-~~Lk~i~~~~~G~d~id-~~~~~~~GI~v~~~~-~~~~~~VAE~al~l~l~~~r~~~~~~~~~~  183 (294)
                      |++|||+++++++++ |++..........++-. .....-.|..|...+ |..+..+|+..-+    +..++..+.+..+
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~----~g~~v~~~d~~~~   76 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAA----LGAQVRGFSRTPK   76 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHH----TTCEEEEECSSCC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeec----ccccccccccccc
Confidence            689999999999887 88765554433323221 111234678888777 7888888887774    4556666655444


Q ss_pred             cCCC
Q psy5259         184 SGEW  187 (294)
Q Consensus       184 ~~~w  187 (294)
                      ++.+
T Consensus        77 ~~~~   80 (181)
T d1qp8a1          77 EGPW   80 (181)
T ss_dssp             CSSS
T ss_pred             ccce
Confidence            4443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.13  E-value=0.24  Score=39.02  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=40.8

Q ss_pred             ChhhhhhhhHHHHHHc-cCcceEEEeeccccc--cccchhhccCcEEEeeC-CCchHHHHHHHHHH
Q psy5259         106 SSDAVAEFNIGLAIAV-KNLKVISTFSVGHDH--LHLDQIKSRGIRVGTVG-PVSSDAVAEFNIGL  167 (294)
Q Consensus       106 ~~~~vae~~~~~~l~~-~~Lk~i~~~~~G~d~--id~~~~~~~GI~v~~~~-~~~~~~VAE~al~l  167 (294)
                      |+++|||+++++++++ |++........-..+  -......-+|..+...+ |..+..+|..+.++
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~f   66 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF   66 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhc
Confidence            6789999999999887 887655533221111  11122234577777766 77888899887664