Psyllid ID: psy5297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV
Secondary Structure (PSIPRED)
cccccEEEccccccEEEEEccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccEEEccHHHHHHHcccccccEEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccEEEEEccccccccccEccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccHHccEEccHcHEEEEccccHHcccccccHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHccccEEEEEEEEEccccc
Coil and Loop (DISEMBL)
mgtgtlvlnqcrhpivelqggvsyipndvyfksgevsfnlvtgpnmggkstyIRSIGVSVFLAQIgcfvpcdsatisVVDQIFTrvgaadsqyRGISTFMMEMKETATVIKKCTENSLVIIDelgrgtstfdgFGMACSIARELasnrqpftlFATHFHEIALLSRVIPTFRNVHESKYLYHTNV
Flexible Loop (DISEMBL)
MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHEskylyhtnv
Low Complexity Region (SEG)
MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV
Disordered region (IsUnstruct)
****TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYH***
Disordered Region (DISOPRED)
***GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLY****
Disordered Region (DISEMBL)
MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV
Disordered Region (DISPRO)
**TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLY****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
P43246	934	DNA mismatch repair prote	yes	N/A	0.940	0.186	0.568	4e-58
Q5XXB5	933	DNA mismatch repair prote	N/A	N/A	0.940	0.186	0.563	7e-58
P54275	933	DNA mismatch repair prote	yes	N/A	0.940	0.186	0.568	1e-57
P43247	935	DNA mismatch repair prote	yes	N/A	0.940	0.186	0.568	2e-57
Q3MHE4	934	DNA mismatch repair prote	yes	N/A	0.940	0.186	0.563	1e-56
P25847	964	DNA mismatch repair prote	yes	N/A	0.886	0.170	0.579	3e-56
Q553L4	937	DNA mismatch repair prote	yes	N/A	0.945	0.186	0.562	9e-56
O13396	937	DNA mismatch repair prote	N/A	N/A	0.940	0.185	0.557	2e-54
P43248	917	DNA mismatch repair prote	yes	N/A	0.940	0.189	0.574	1e-52
O74773	982	DNA mismatch repair prote	yes	N/A	0.945	0.178	0.542	3e-52

>sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1

 Score =  224 bits (570), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 133/174 (76%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G ++L   RH  VE+Q  +++IPNDVYF+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 628 GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis.
Homo sapiens (taxid: 9606)

>sp|Q5XXB5|MSH2_CHLAE DNA mismatch repair protein Msh2 OS=Chlorocebus aethiops GN=MSH2 PE=2 SV=1

 Score =  223 bits (567), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 98/174 (56%), Positives = 133/174 (76%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G ++L   RH  VE+Q  +++IPND+YF+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 628 GQGRIILKASRHACVEVQDEITFIPNDIYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis.

Chlorocebus aethiops (taxid: 9534)

>sp|P54275|MSH2_RAT DNA mismatch repair protein Msh2 OS=Rattus norvegicus GN=Msh2 PE=2 SV=1

 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 134/174 (77%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G +++   RH  VE+Q  V++IPNDV+F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 628 GKGRIIVKASRHACVEVQHDVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+N   F +FATHFHE+  L+  IPT  N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATNIGAFCMFATHFHELTALASQIPTVNNLH 801

Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|P43247|MSH2_MOUSE DNA mismatch repair protein Msh2 OS=Mus musculus GN=Msh2 PE=2 SV=1

 Score =  221 bits (563), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 133/174 (76%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G ++L   RH  VE+Q  V++IPNDV+F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 628 GKGRIILKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISDYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis.

Mus musculus (taxid: 10090)

>sp|Q3MHE4|MSH2_BOVIN DNA mismatch repair protein Msh2 OS=Bos taurus GN=MSH2 PE=2 SV=1

 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 98/174 (56%), Positives = 131/174 (75%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G + L   RH  VE+Q  V++IPNDV+F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 628 GRGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+ A +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct: 688 MAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis.

Bos taurus (taxid: 9913)

>sp|P25847|MSH2_YEAST DNA mismatch repair protein MSH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSH2 PE=1 SV=2

 Score =  218 bits (554), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 95/164 (57%), Positives = 128/164 (78%)

Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP++E+Q  +S+I NDV  +SG+  F ++TGPNMGGKSTYIR +GV   +AQIGCFVPC
Sbjct: 657 RHPVLEMQDDISFISNDVTLESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPC 716

Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           + A I++VD I  RVGA DSQ +G+STFM+E+ ETA+++K  ++NSL+I+DELGRGTST+
Sbjct: 717 EEAEIAIVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTY 776

Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DGFG+A +IA  +AS    F LFATHFHE+  LS  +P  +N+H
Sbjct: 777 DGFGLAWAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMH 820

Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer), which bind to DNA mismatches thereby initiating DNA repair. MSH2 seems to act as a scaffold for the other MutS homologs that provide substrate-binding and substrate-specificity. When bound, heterodimers bend the DNA helix and shield approximately 20 base pairs. MutS alpha acts mainly to repair base-base and single insertion-deletion mismatches that occur during replication, but can also repair longer insertion-deletion loops (IDLs), although with decreasing efficiency as the size of the extrahelical loop increases. MutS beta acts mainly to repair IDLs from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches. After mismatch binding, MutS alpha or beta form a ternary complex with a MutL heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. Both subunits bind ATP, but with differing affinities, and their ATPase kinetics are also very different. MSH6 binds and hydrolyzes ATP rapidly, whereas MSH2 catalyzes ATP at a substantially slower rate. Binding to a mismatched base pair suppresses MSH6-catalyzed ATP hydrolysis, but not the activity of MSH2. ATP binding to both subunits is necessary to trigger a change in MutS alpha interaction with mismatched DNA, converting MutS alpha into a sliding clamp capable of hydrolysis-independent movement along DNA, and also facilitates formation of ternary complexes containing MutS and MutL proteins and the mismatch. MutS beta also has a role in regulation of heteroduplex formation during mitotic and meiotic recombination. MutS beta binds to DNA flap structures predicted to form during recombination, and is required for 3' non-homologous tail removal (NHTR). MutS beta-binding alters the DNA conformation of its substrate at the ds/ssDNA junction and may facilitate its recognition and/or cleavage by the downstream nucleotide excision repair (NER) RAD1-RAD10 endonuclease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q553L4|MSH2_DICDI DNA mismatch repair protein Msh2 OS=Dictyostelium discoideum GN=msh2 PE=3 SV=1

 Score =  216 bits (549), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 99/176 (56%), Positives = 131/176 (74%), Gaps = 1/176 (0%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G GT+++   RHP VE+Q  V++I ND+    G+  F ++TGPNMGGKST+IR +G+ V 
Sbjct: 667 GAGTVIIGG-RHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKSTFIRQVGLIVL 725

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVP   ATI+VVD I +RVGA DSQ RG+STFM EM ET+ ++K  T+NSL+II
Sbjct: 726 MAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIII 785

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHES 177
           DELGRGTST+DGFG+A  IA  + +    F LFATHFHE+ +LS ++P  +N+H S
Sbjct: 786 DELGRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMVKNLHVS 841

Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (msh2-msh6 heterodimer) and MutS beta (msh2-msh3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair.

Dictyostelium discoideum (taxid: 44689)

>sp|O13396|MSH2_NEUCR DNA mismatch repair protein msh-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msh-2 PE=3 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 124/174 (71%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           GTG  VL + RHP +E+Q  V++I NDV     + SF ++TGPNMGGKSTYIR IGV   
Sbjct: 618 GTGRTVLTEARHPCMEVQDDVTFITNDVTLTREDSSFLIITGPNMGGKSTYIRQIGVIAL 677

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC SA +++ D I  RVGA+DSQ +G+STFM EM ETA ++K  T  SL+II
Sbjct: 678 MAQIGCFVPCSSAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIII 737

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +      F LFATHFHE+  L+   P  +N+H
Sbjct: 738 DELGRGTSTYDGFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPNVKNLH 791

Involved in post-replicative DNA-mismatch repair. Binds to mismatch-containing DNA.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P43248|MSH2_DROME DNA mismatch repair protein spellchecker 1 OS=Drosophila melanogaster GN=spel1 PE=3 SV=4

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 126/174 (72%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G   LVL   RHP +ELQ  V++I N V FK  E +  ++TGPNMGGKSTYIRS+G +V 
Sbjct: 626 GARELVLEDVRHPCLELQEHVNFIANSVDFKKEECNMFIITGPNMGGKSTYIRSVGTAVL 685

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +A IG FVPC  ATIS+VD I  RVGA+D+  +G+STFM+EM ET+ +I+  T+ SLVII
Sbjct: 686 MAHIGAFVPCSLATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVII 745

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST++G G+A SIA  LA   + FTLFATHFHEI  L+  + T +N H
Sbjct: 746 DELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITKLAETLSTVKNCH 799

Involved in postreplication mismatch repair. Binds specifically to DNA containing mismatched nucleotides thus providing a target for the excision repair processes characteristic of postreplication mismatch repair.

Drosophila melanogaster (taxid: 7227)

>sp|O74773|MSH2_SCHPO DNA mismatch repair protein msh2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msh2 PE=3 SV=2

 Score =  204 bits (518), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 122/175 (69%)

Query: 6   LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI 65
           L L Q RHP +E Q  V +IPNDV  + G     ++TGPNMGGKSTYIR +GV   +AQI
Sbjct: 684 LYLKQARHPCLEAQDDVKFIPNDVNLEHGSSELLIITGPNMGGKSTYIRQVGVITVMAQI 743

Query: 66  GCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELG 125
           GC VPC+ A + ++D I  RVGA+DSQ +GISTFM EM ETAT+++  T  SL+IIDELG
Sbjct: 744 GCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDELG 803

Query: 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYL 180
           RGTST DGFG+A +I   + +    F LFATH+HE+  LS  I T +N+H + Y+
Sbjct: 804 RGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMTKLSEEITTVKNLHVTAYV 858

Involved in post-replicative DNA-mismatch repair. Binds to mismatch-containing DNA. Required for correct termination of copy synthesis during mating-type switching. Also required for proper chromosome organization during meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
328713533	697	PREDICTED: DNA mismatch repair protein M	0.951	0.252	0.636	5e-62
15625578	936	mismatch repair protein Msh2 [Danio reri	0.940	0.185	0.609	3e-60
182889828	936	Msh2 protein [Danio rerio]	0.940	0.185	0.597	8e-59
47087243	936	DNA mismatch repair protein Msh2 [Danio	0.940	0.185	0.597	9e-59
327262719	953	PREDICTED: DNA mismatch repair protein M	0.940	0.182	0.597	1e-58
57870611	676	MSH2 protein, partial [Xenopus laevis]	0.940	0.257	0.574	3e-58
326914909	873	PREDICTED: DNA mismatch repair protein M	0.940	0.199	0.591	3e-58
34330121	861	hypothetical protein [Gallus gallus]	0.940	0.202	0.591	4e-58
1079288	933	DNA mismatch repair protein MSH2 - Afric	0.940	0.186	0.574	4e-58
449496456	864	PREDICTED: DNA mismatch repair protein M	0.940	0.201	0.586	8e-58

>gi|328713533|ref|XP_001949991.2| PREDICTED: DNA mismatch repair protein Msh2 [Acyrthosiphon pisum]

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 135/176 (76%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           GTG L L Q RHP VE+Q  VSYIPND YF  G+ +FN++TGPNMGGKSTYIRS+ V+VF
Sbjct: 420 GTGLLDLKQVRHPCVEVQDSVSYIPNDAYFNQGKCTFNVITGPNMGGKSTYIRSVAVAVF 479

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +A +G FVPCD+A ISVVD I  RVGA DSQ +G+STFM+EM ET +++K+ T  SLVII
Sbjct: 480 MAHMGSFVPCDAAEISVVDAILARVGANDSQIKGLSTFMVEMIETVSILKRATSESLVII 539

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHES 177
           DELGRGTST++G G+AC+IA  LA   + FTLFATHFHE+  L   IPT  N H S
Sbjct: 540 DELGRGTSTYEGCGIACAIAERLAVETKAFTLFATHFHELTKLHETIPTITNKHVS 595

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15625578|gb|AAL04169.1|AF412833_1 mismatch repair protein Msh2 [Danio rerio]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 136/174 (78%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G+G LVL   RHP VE Q  V++IPNDV F SGE  F+++TGPNMGGKSTYIR +GV V 
Sbjct: 628 GSGRLVLKAARHPCVEAQDEVAFIPNDVTFISGEKMFHIITGPNMGGKSTYIRQVGVIVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPCD A +SVVD +  RVGA DSQ +G+STFM EM ETA +++  +E+SL+II
Sbjct: 688 MAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSASEDSLIII 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+  + F LFATHFHE+  L++ +PT RN+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNLH 801

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|182889828|gb|AAI65693.1| Msh2 protein [Danio rerio]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 134/174 (77%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G+G LVL   RHP VE Q  V++IPNDV F  GE  F+++TGP+MGGKSTYIR +GV V 
Sbjct: 628 GSGRLVLKAARHPCVEAQDEVAFIPNDVTFIRGEKMFHIITGPSMGGKSTYIRQVGVIVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPCD A +SVVD +  RVGA DSQ +G+STFM EM ETA +++  TE+SL+ I
Sbjct: 688 MAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSATEDSLITI 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+  + F LFATHFHE+  L++ +PT RN+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNLH 801

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47087243|ref|NP_998689.1| DNA mismatch repair protein Msh2 [Danio rerio] gi|28278396|gb|AAH44370.1| MutS homolog 2 (E. coli) [Danio rerio]

 Score =  231 bits (589), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 134/174 (77%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G+G LVL   RHP VE Q  V++IPNDV F  GE  F+++TGP+MGGKSTYIR +GV V 
Sbjct: 628 GSGRLVLKAARHPCVEAQDEVAFIPNDVTFIRGEKMFHIITGPSMGGKSTYIRQVGVIVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPCD A +SVVD +  RVGA DSQ +G+STFM EM ETA +++  TE+SL+ I
Sbjct: 688 MAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSATEDSLITI 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+  + F LFATHFHE+  L++ +PT RN+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNLH 801

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327262719|ref|XP_003216171.1| PREDICTED: DNA mismatch repair protein Msh2-like [Anolis carolinensis]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 133/174 (76%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G +VL   RHP +E+Q  VS+IPNDV F+ G+  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 644 GEGGIVLKAARHPCIEVQDDVSFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQAGVIVL 703

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPCDSA I++VD I  RVGA DSQ +G+STFM EM ET+++++  TENSL+II
Sbjct: 704 MAQIGCFVPCDSADITIVDCILARVGAGDSQLKGVSTFMAEMLETSSILRTATENSLIII 763

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L   IPT  N+H
Sbjct: 764 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALDEEIPTVNNLH 817

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|57870611|gb|AAH89046.1| MSH2 protein, partial [Xenopus laevis]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 134/174 (77%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G +VL+  RHP +E+Q  V++IPND+ F+  +  F ++TGPNMGGKSTYIR  GV V 
Sbjct: 371 GQGRIVLHSARHPCIEMQDDVAFIPNDITFEKEKQMFQIITGPNMGGKSTYIRQTGVIVL 430

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPCDSA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  TENSL+II
Sbjct: 431 MAQIGCFVPCDSAQVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATENSLIII 490

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +++  + F +FATHFHE+  L+  +PT  N+H
Sbjct: 491 DELGRGTSTYDGFGLAWAISEYISTKIKAFCMFATHFHELTALADQVPTVNNLH 544

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326914909|ref|XP_003203765.1| PREDICTED: DNA mismatch repair protein Msh2-like [Meleagris gallopavo]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 134/174 (77%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G +VL   RHP +E+Q  V++IPNDV F+ G+  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 568 GQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVL 627

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPCDSA I++VD I  RVGA DSQ +G+STFM EM ETA++++  +ENSL+II
Sbjct: 628 MAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIII 687

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +AS    F +FATHFHE+  L+  +PT  N+H
Sbjct: 688 DELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLH 741

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|34330121|dbj|BAC82442.1| hypothetical protein [Gallus gallus]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 134/174 (77%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G +VL   RHP +E+Q  V++IPNDV F+ G+  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 556 GQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVL 615

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPCDSA I++VD I  RVGA DSQ +G+STFM EM ETA++++  +ENSL+II
Sbjct: 616 MAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIII 675

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +AS    F +FATHFHE+  L+  +PT  N+H
Sbjct: 676 DELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLH 729

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|1079288|pir||S53609 DNA mismatch repair protein MSH2 - African clawed frog

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 135/174 (77%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G +VL+  RHP +E+Q  V++IPND+ F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 627 GQGRIVLHSARHPCIEMQDDVAFIPNDITFEKEKQMFHIITGPNMGGKSTYIRQTGVIVL 686

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPCDSA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  TENSL+II
Sbjct: 687 MAQIGCFVPCDSAQVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATENSLIII 746

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +++  + F +FATHFHE+  L+  +PT  N+H
Sbjct: 747 DELGRGTSTYDGFGLAWAISEYISTKIKAFCMFATHFHELTALADQVPTVNNLH 800

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449496456|ref|XP_002195963.2| PREDICTED: DNA mismatch repair protein Msh2 [Taeniopygia guttata]

 Score =  228 bits (581), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 102/174 (58%), Positives = 134/174 (77%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G +VL   RHP +E+Q  V++IPND+ F+ G+  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 559 GQGRIVLKGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPNMGGKSTYIRQTGVIVL 618

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+SA I++VD I  RVGA DSQ +G+STFM EM ETA++++  TENSL+II
Sbjct: 619 MAQIGCFVPCESAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTATENSLIII 678

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +AS    F +FATHFHE+  L+  +PT  N+H
Sbjct: 679 DELGRGTSTYDGFGLAWAISEYIASKICGFAMFATHFHELTALADQVPTVNNLH 732

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
ZFIN|ZDB-GENE-040426-2932	936	msh2 "mutS homolog 2 (E. coli)	0.940	0.185	0.609	2.4e-55
UNIPROTKB|F1NV33	861	MSH2 "Uncharacterized protein"	0.940	0.202	0.586	2.9e-53
UNIPROTKB|F1NFH4	866	MSH2 "Uncharacterized protein"	0.940	0.200	0.586	3e-53
UNIPROTKB|E9PHA6	921	MSH2 "DNA mismatch repair prot	0.940	0.188	0.568	2.6e-52
UNIPROTKB|F1SQH4	450	LOC100739713 "Uncharacterized	0.940	0.386	0.568	2.7e-52
UNIPROTKB|F1SQH6	584	LOC100739713 "Uncharacterized	0.940	0.297	0.568	2.7e-52
UNIPROTKB|P43246	934	MSH2 "DNA mismatch repair prot	0.940	0.186	0.568	2.8e-52
RGD|620786	933	Msh2 "mutS homolog 2 (E. coli)	0.940	0.186	0.568	4.6e-52
MGI|MGI:101816	935	Msh2 "mutS homolog 2 (E. coli)	0.940	0.186	0.568	1.3e-51
UNIPROTKB|F1PM37	934	MSH2 "Uncharacterized protein"	0.940	0.186	0.568	1.6e-51

ZFIN|ZDB-GENE-040426-2932 msh2 "mutS homolog 2 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 577 (208.2 bits), Expect = 2.4e-55, P = 2.4e-55
 Identities = 106/174 (60%), Positives = 136/174 (78%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G+G LVL   RHP VE Q  V++IPNDV F SGE  F+++TGPNMGGKSTYIR +GV V 
Sbjct:   628 GSGRLVLKAARHPCVEAQDEVAFIPNDVTFISGEKMFHIITGPNMGGKSTYIRQVGVIVL 687

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPCD A +SVVD +  RVGA DSQ +G+STFM EM ETA +++  +E+SL+II
Sbjct:   688 MAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSASEDSLIII 747

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +A+  + F LFATHFHE+  L++ +PT RN+H
Sbjct:   748 DELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNLH 801

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032301 "MutSalpha complex" evidence=IEA;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA;ISS

GO:0032302 "MutSbeta complex" evidence=IEA;IBA

GO:0032137 "guanine/thymine mispair binding" evidence=IGI;IDA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0010224 "response to UV-B" evidence=IBA

GO:0031573 "intra-S DNA damage checkpoint" evidence=IBA

GO:0006301 "postreplication repair" evidence=IBA

GO:0045190 "isotype switching" evidence=IBA

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0010165 "response to X-ray" evidence=IBA

GO:0045128 "negative regulation of reciprocal meiotic recombination" evidence=IBA

GO:0000400 "four-way junction DNA binding" evidence=IBA

GO:0032138 "single base insertion or deletion binding" evidence=IBA

GO:0003684 "damaged DNA binding" evidence=IBA

GO:0000403 "Y-form DNA binding" evidence=IBA

GO:0000404 "loop DNA binding" evidence=IBA

GO:0042771 "intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator" evidence=IBA

GO:0006302 "double-strand break repair" evidence=IBA

GO:0000710 "meiotic mismatch repair" evidence=IBA

GO:0000228 "nuclear chromosome" evidence=IBA

GO:0000406 "double-strand/single-strand DNA junction binding" evidence=IBA

GO:0006311 "meiotic gene conversion" evidence=IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IBA

GO:0043570 "maintenance of DNA repeat elements" evidence=IMP

UNIPROTKB|F1NV33 MSH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 556 (200.8 bits), Expect = 2.9e-53, P = 2.9e-53
 Identities = 102/174 (58%), Positives = 134/174 (77%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G +VL   RHP +E+Q  V++IPNDV F+ G+  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   556 GQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVL 615

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA I++VD I  RVGA DSQ +G+STFM EM ETA++++  +ENSL+II
Sbjct:   616 MAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIII 675

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +AS    F +FATHFHE+  L+  +PT  N+H
Sbjct:   676 DELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLH 729

GO:0005524 "ATP binding" evidence=IEA

GO:0032302 "MutSbeta complex" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0000400 "four-way junction DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0007281 "germ cell development" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0010224 "response to UV-B" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0019237 "centromeric DNA binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0031573 "intra-S DNA damage checkpoint" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0032142 "single guanine insertion binding" evidence=IEA

GO:0032143 "single thymine insertion binding" evidence=IEA

GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA

GO:0032301 "MutSalpha complex" evidence=IEA

GO:0032357 "oxidized purine DNA binding" evidence=IEA

GO:0032405 "MutLalpha complex binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043570 "maintenance of DNA repeat elements" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045910 "negative regulation of DNA recombination" evidence=IEA

GO:0051096 "positive regulation of helicase activity" evidence=IEA

UNIPROTKB|F1NFH4 MSH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 556 (200.8 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 102/174 (58%), Positives = 134/174 (77%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G +VL   RHP +E+Q  V++IPNDV F+ G+  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   561 GQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVL 620

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA I++VD I  RVGA DSQ +G+STFM EM ETA++++  +ENSL+II
Sbjct:   621 MAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIII 680

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +AS    F +FATHFHE+  L+  +PT  N+H
Sbjct:   681 DELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNNLH 734

GO:0005524 "ATP binding" evidence=IEA

GO:0032302 "MutSbeta complex" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0000400 "four-way junction DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0007281 "germ cell development" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0010224 "response to UV-B" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0019237 "centromeric DNA binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0031573 "intra-S DNA damage checkpoint" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0032142 "single guanine insertion binding" evidence=IEA

GO:0032143 "single thymine insertion binding" evidence=IEA

GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA

GO:0032301 "MutSalpha complex" evidence=IEA

GO:0032357 "oxidized purine DNA binding" evidence=IEA

GO:0032405 "MutLalpha complex binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043570 "maintenance of DNA repeat elements" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045910 "negative regulation of DNA recombination" evidence=IEA

GO:0051096 "positive regulation of helicase activity" evidence=IEA

UNIPROTKB|E9PHA6 MSH2 "DNA mismatch repair protein Msh2" [Homo sapiens (taxid:9606)]

 Score = 549 (198.3 bits), Expect = 2.6e-52, P = 2.6e-52
 Identities = 99/174 (56%), Positives = 133/174 (76%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G ++L   RH  VE+Q  +++IPNDVYF+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   628 GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct:   688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct:   748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

GO:0005524 "ATP binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032301 "MutSalpha complex" evidence=IEA

GO:0032302 "MutSbeta complex" evidence=IEA

UNIPROTKB|F1SQH4 LOC100739713 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 99/174 (56%), Positives = 132/174 (75%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G + L   RH  VE+Q  V++IPNDV+F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   144 GQGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVL 203

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct:   204 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 263

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct:   264 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 317

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1SQH6 LOC100739713 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 99/174 (56%), Positives = 132/174 (75%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G + L   RH  VE+Q  V++IPNDV+F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   278 GQGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVL 337

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct:   338 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 397

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct:   398 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 451

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P43246 MSH2 "DNA mismatch repair protein Msh2" [Homo sapiens (taxid:9606)]

 Score = 549 (198.3 bits), Expect = 2.8e-52, P = 2.8e-52
 Identities = 99/174 (56%), Positives = 133/174 (76%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G ++L   RH  VE+Q  +++IPNDVYF+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   628 GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct:   688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct:   748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0007281 "germ cell development" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IEA

GO:0019237 "centromeric DNA binding" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IBA

GO:0000403 "Y-form DNA binding" evidence=IBA

GO:0000404 "loop DNA binding" evidence=IBA

GO:0000406 "double-strand/single-strand DNA junction binding" evidence=IBA

GO:0000710 "meiotic mismatch repair" evidence=IBA

GO:0006302 "double-strand break repair" evidence=IBA

GO:0006311 "meiotic gene conversion" evidence=IBA

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0010165 "response to X-ray" evidence=ISS;IBA

GO:0010224 "response to UV-B" evidence=ISS;IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IBA

GO:0031573 "intra-S DNA damage checkpoint" evidence=IBA

GO:0042771 "intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator" evidence=IBA

GO:0045128 "negative regulation of reciprocal meiotic recombination" evidence=IBA

GO:0045190 "isotype switching" evidence=ISS;IBA

GO:0005515 "protein binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0006298 "mismatch repair" evidence=IDA

GO:0006301 "postreplication repair" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0003677 "DNA binding" evidence=IDA

GO:0032137 "guanine/thymine mispair binding" evidence=IDA;IMP

GO:0032405 "MutLalpha complex binding" evidence=IDA

GO:0032301 "MutSalpha complex" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0032302 "MutSbeta complex" evidence=IDA

GO:0030983 "mismatched DNA binding" evidence=IDA

GO:0032139 "dinucleotide insertion or deletion binding" evidence=IDA

GO:0032143 "single thymine insertion binding" evidence=IDA

GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0032142 "single guanine insertion binding" evidence=IDA

GO:0032357 "oxidized purine DNA binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0043570 "maintenance of DNA repeat elements" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0000400 "four-way junction DNA binding" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0019724 "B cell mediated immunity" evidence=ISS

GO:0008584 "male gonad development" evidence=ISS

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=ISS

GO:0030183 "B cell differentiation" evidence=ISS

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISS

GO:0045910 "negative regulation of DNA recombination" evidence=ISS;IDA

GO:0006281 "DNA repair" evidence=IDA

GO:0051096 "positive regulation of helicase activity" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

RGD|620786 Msh2 "mutS homolog 2 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 547 (197.6 bits), Expect = 4.6e-52, P = 4.6e-52
 Identities = 99/174 (56%), Positives = 134/174 (77%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G +++   RH  VE+Q  V++IPNDV+F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   628 GKGRIIVKASRHACVEVQHDVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct:   688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +A+N   F +FATHFHE+  L+  IPT  N+H
Sbjct:   748 DELGRGTSTYDGFGLAWAISEYIATNIGAFCMFATHFHELTALASQIPTVNNLH 801

GO:0000228 "nuclear chromosome" evidence=IBA

GO:0000287 "magnesium ion binding" evidence=IEA;ISO

GO:0000400 "four-way junction DNA binding" evidence=IEA;ISO;IBA

GO:0000403 "Y-form DNA binding" evidence=IBA

GO:0000404 "loop DNA binding" evidence=IBA

GO:0000406 "double-strand/single-strand DNA junction binding" evidence=IBA

GO:0000710 "meiotic mismatch repair" evidence=IBA

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0002204 "somatic recombination of immunoglobulin genes involved in immune response" evidence=ISO

GO:0003677 "DNA binding" evidence=ISO;ISS

GO:0003684 "damaged DNA binding" evidence=ISO;IBA

GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006298 "mismatch repair" evidence=IEA;ISO

GO:0006301 "postreplication repair" evidence=ISO;ISS;IBA

GO:0006302 "double-strand break repair" evidence=IEA;ISO;IBA

GO:0006311 "meiotic gene conversion" evidence=IBA

GO:0006915 "apoptotic process" evidence=IEA;ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007050 "cell cycle arrest" evidence=IEA;ISO

GO:0007281 "germ cell development" evidence=IEA;ISO

GO:0007283 "spermatogenesis" evidence=IEP

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0008340 "determination of adult lifespan" evidence=IEA;ISO

GO:0008584 "male gonad development" evidence=IEA;ISO

GO:0010165 "response to X-ray" evidence=IEA;ISO;IBA

GO:0010224 "response to UV-B" evidence=IEA;ISO;IBA

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA;ISO;IBA

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA;ISO

GO:0019237 "centromeric DNA binding" evidence=IEA;ISO

GO:0019724 "B cell mediated immunity" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0030183 "B cell differentiation" evidence=IEA;ISO

GO:0030983 "mismatched DNA binding" evidence=ISO

GO:0031573 "intra-S DNA damage checkpoint" evidence=IEA;ISO;IBA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA;ISO;IBA

GO:0032138 "single base insertion or deletion binding" evidence=IBA

GO:0032142 "single guanine insertion binding" evidence=IEA;ISO

GO:0032143 "single thymine insertion binding" evidence=IEA;ISO

GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA;ISO

GO:0032301 "MutSalpha complex" evidence=IEA;ISO;IBA

GO:0032302 "MutSbeta complex" evidence=IEA;ISO;IBA

GO:0032357 "oxidized purine DNA binding" evidence=IEA;ISO

GO:0032405 "MutLalpha complex binding" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042771 "intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator" evidence=IBA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043200 "response to amino acid stimulus" evidence=IEP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA;ISO

GO:0043531 "ADP binding" evidence=IEA;ISO

GO:0043570 "maintenance of DNA repeat elements" evidence=IEA;ISO;IBA

GO:0045128 "negative regulation of reciprocal meiotic recombination" evidence=IBA

GO:0045190 "isotype switching" evidence=IEA;ISO;IBA

GO:0045910 "negative regulation of DNA recombination" evidence=IEA;ISO

GO:0051096 "positive regulation of helicase activity" evidence=IEA;ISO

GO:0003690 "double-stranded DNA binding" evidence=ISO

GO:0032139 "dinucleotide insertion or deletion binding" evidence=ISO

MGI|MGI:101816 Msh2 "mutS homolog 2 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 543 (196.2 bits), Expect = 1.3e-51, P = 1.3e-51
 Identities = 99/174 (56%), Positives = 133/174 (76%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G ++L   RH  VE+Q  V++IPNDV+F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   628 GKGRIILKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct:   688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct:   748 DELGRGTSTYDGFGLAWAISDYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IBA

GO:0000400 "four-way junction DNA binding" evidence=IBA

GO:0000403 "Y-form DNA binding" evidence=IBA

GO:0000404 "loop DNA binding" evidence=IBA

GO:0000406 "double-strand/single-strand DNA junction binding" evidence=IBA

GO:0000710 "meiotic mismatch repair" evidence=IBA

GO:0001701 "in utero embryonic development" evidence=IGI

GO:0002204 "somatic recombination of immunoglobulin genes involved in immune response" evidence=IGI

GO:0003677 "DNA binding" evidence=ISO;IMP

GO:0003684 "damaged DNA binding" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IC;IDA

GO:0006119 "oxidative phosphorylation" evidence=IMP

GO:0006200 "ATP catabolic process" evidence=ISO;IMP

GO:0006281 "DNA repair" evidence=ISO;IMP

GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP

GO:0006301 "postreplication repair" evidence=ISO;IMP

GO:0006302 "double-strand break repair" evidence=IMP

GO:0006311 "meiotic gene conversion" evidence=IBA

GO:0006915 "apoptotic process" evidence=IGI;IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0007049 "cell cycle" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0008584 "male gonad development" evidence=IMP

GO:0010165 "response to X-ray" evidence=IMP

GO:0010224 "response to UV-B" evidence=IMP

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IGI;IMP

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=IGI;IMP

GO:0016887 "ATPase activity" evidence=IMP

GO:0019237 "centromeric DNA binding" evidence=IDA

GO:0019724 "B cell mediated immunity" evidence=IMP

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030183 "B cell differentiation" evidence=IMP

GO:0030983 "mismatched DNA binding" evidence=IMP

GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI

GO:0032137 "guanine/thymine mispair binding" evidence=ISO;IDA

GO:0032138 "single base insertion or deletion binding" evidence=IBA

GO:0032301 "MutSalpha complex" evidence=ISO;IDA

GO:0032302 "MutSbeta complex" evidence=ISO;IBA

GO:0042771 "intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator" evidence=IBA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA

GO:0045128 "negative regulation of reciprocal meiotic recombination" evidence=IBA

GO:0045190 "isotype switching" evidence=IMP

GO:0045910 "negative regulation of DNA recombination" evidence=ISO;IMP

GO:0051096 "positive regulation of helicase activity" evidence=ISO

UNIPROTKB|F1PM37 MSH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 542 (195.9 bits), Expect = 1.6e-51, P = 1.6e-51
 Identities = 99/174 (56%), Positives = 132/174 (75%)

Query:     2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G G + L   RH  VE+Q  V++IPNDV+F+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct:   628 GQGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query:    62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
             +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct:   688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query:   122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
             DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct:   748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

GO:0032302 "MutSbeta complex" evidence=IEA

GO:0032301 "MutSalpha complex" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54275	MSH2_RAT	No assigned EC number	0.5689	0.9405	0.1864	yes	N/A
Q553L4	MSH2_DICDI	No assigned EC number	0.5625	0.9459	0.1867	yes	N/A
Q7NRW7	MUTS_CHRVO	No assigned EC number	0.5060	0.8864	0.1878	yes	N/A
O24617	MSH2_ARATH	No assigned EC number	0.5731	0.8864	0.1750	yes	N/A
P25847	MSH2_YEAST	No assigned EC number	0.5792	0.8864	0.1701	yes	N/A
A4G717	MUTS_HERAR	No assigned EC number	0.5144	0.9243	0.1914	yes	N/A
O74773	MSH2_SCHPO	No assigned EC number	0.5428	0.9459	0.1782	yes	N/A
A6SXI2	MUTS_JANMA	No assigned EC number	0.5144	0.9243	0.1938	yes	N/A
B8CJQ5	MUTS_SHEPW	No assigned EC number	0.5060	0.8810	0.1895	yes	N/A
Q3MHE4	MSH2_BOVIN	No assigned EC number	0.5632	0.9405	0.1862	yes	N/A
P43248	MSH2_DROME	No assigned EC number	0.5747	0.9405	0.1897	yes	N/A
P43247	MSH2_MOUSE	No assigned EC number	0.5689	0.9405	0.1860	yes	N/A
P43246	MSH2_HUMAN	No assigned EC number	0.5689	0.9405	0.1862	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	185
cd03285	222	cd03285, ABC_MSH2_euk, ATP-binding cassette domain	1e-92
pfam00488	235	pfam00488, MutS_V, MutS domain V	4e-90
COG0249	843	COG0249, MutS, Mismatch repair ATPase (MutS family	1e-82
PRK05399	854	PRK05399, PRK05399, DNA mismatch repair protein Mu	7e-81
smart00534	185	smart00534, MUTSac, ATPase domain of DNA mismatch	1e-73
cd03284	216	cd03284, ABC_MutS1, ATP-binding cassette domain of	8e-73
cd03243	202	cd03243, ABC_MutS_homologs, ATP-binding cassette d	1e-68
TIGR01070	840	TIGR01070, mutS1, DNA mismatch repair protein MutS	8e-64
cd03287	222	cd03287, ABC_MSH3_euk, ATP-binding cassette domain	9e-62
cd03286	218	cd03286, ABC_MSH6_euk, ATP-binding cassette domain	3e-59
cd03281	213	cd03281, ABC_MSH5_euk, ATP-binding cassette domain	1e-51
cd03282	204	cd03282, ABC_MSH4_euk, ATP-binding cassette domain	4e-49
cd03283	199	cd03283, ABC_MutS-like, ATP-binding cassette domai	6e-33
cd03280	200	cd03280, ABC_MutS2, ATP-binding cassette domain of	2e-31
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	5e-28
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	1e-27
COG1193	753	COG1193, COG1193, Mismatch repair ATPase (MutS fam	6e-24
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	9e-23
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-08

>gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog

 Score =  268 bits (688), Expect = 1e-92
 Identities = 104/169 (61%), Positives = 129/169 (76%)

Query: 7   VLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG 66
           VL + RHP VE Q  V++IPNDV    G+  F ++TGPNMGGKSTYIR IGV V +AQIG
Sbjct: 1   VLKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG 60

Query: 67  CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGR 126
           CFVPCDSA I +VD I  RVGA+DSQ +G+STFM EM ETA ++K  TENSL+IIDELGR
Sbjct: 61  CFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120

Query: 127 GTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           GTST+DGFG+A +IA  +A+  + F LFATHFHE+  L+  +P  +N+H
Sbjct: 121 GTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLH 169

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222

>gnl|CDD|215944 pfam00488, MutS_V, MutS domain V

 Score =  262 bits (673), Expect = 4e-90
 Identities = 86/173 (49%), Positives = 116/173 (67%), Gaps = 1/173 (0%)

Query: 4   GTLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 62
             L +   RHP+VE      +++PNDV          L+TGPNMGGKSTY+R + + V +
Sbjct: 10  AALHIEGGRHPVVEAVLDAGNFVPNDVSLGKERSRILLITGPNMGGKSTYLRQVALIVIM 69

Query: 63  AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIID 122
           AQIG FVP +SA I +VD+IFTR+GA+D    G STFM+EM ETA ++   T+ SLVI+D
Sbjct: 70  AQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMLETANILHNATDKSLVILD 129

Query: 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           ELGRGTST+DG  +A ++A  LA   +  TLFATH+HE+  L+  +P  +NVH
Sbjct: 130 ELGRGTSTYDGLAIAWAVAEHLAEKIRARTLFATHYHELTKLAEKLPAVKNVH 182

This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterized in, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. Length = 235

>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

 Score =  260 bits (667), Expect = 1e-82
 Identities = 85/166 (51%), Positives = 110/166 (66%), Gaps = 1/166 (0%)

Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP+VE      ++PND+   SG     L+TGPNMGGKSTY+R + + V LAQIG FVP 
Sbjct: 584 RHPVVEAVLDNGFVPNDIDL-SGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPA 642

Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           + A I +VD+IFTR+GAAD    G STFM+EM ETA ++   TE SLVI+DE+GRGTST+
Sbjct: 643 EKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTY 702

Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHES 177
           DG  +A ++   L       TLFATH+HE+  L   +P  +N H S
Sbjct: 703 DGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMS 748

Length = 843

>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional

 Score =  256 bits (656), Expect = 7e-81
 Identities = 85/173 (49%), Positives = 115/173 (66%), Gaps = 2/173 (1%)

Query: 4   GTLVLNQCRHPIVE-LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 62
             + + + RHP+VE + GG  ++PND      E    L+TGPNM GKSTY+R + + V L
Sbjct: 575 PGIDIEEGRHPVVEQVLGGEPFVPNDCDL-DEERRLLLITGPNMAGKSTYMRQVALIVLL 633

Query: 63  AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIID 122
           AQIG FVP +SA I +VD+IFTR+GA+D    G STFM+EM ETA ++   TE SLV++D
Sbjct: 634 AQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLD 693

Query: 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           E+GRGTST+DG  +A ++A  L       TLFATH+HE+  L   +P  +NVH
Sbjct: 694 EIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVH 746

Length = 854

>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family

 Score =  218 bits (559), Expect = 1e-73
 Identities = 76/138 (55%), Positives = 102/138 (73%)

Query: 38  FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGIS 97
             ++TGPNMGGKSTY+R + + V +AQIG FVP +SA + V D+IFTR+GA+DS  +G+S
Sbjct: 1   VVIITGPNMGGKSTYLRQVALIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLS 60

Query: 98  TFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH 157
           TFM+EMKETA ++K  T+NSLV++DELGRGTST+DG  +A +I   L       TLFATH
Sbjct: 61  TFMVEMKETANILKNATKNSLVLLDELGRGTSTYDGLAIAAAILEYLLEKIGARTLFATH 120

Query: 158 FHEIALLSRVIPTFRNVH 175
           +HE+  L+   P  RN+H
Sbjct: 121 YHELTKLADNHPGVRNLH 138

Length = 185

>gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog

 Score =  218 bits (557), Expect = 8e-73
 Identities = 81/165 (49%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 12  RHPIVE-LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVP 70
           RHP+VE +     ++PND      E    L+TGPNM GKSTY+R + +   LAQIG FVP
Sbjct: 6   RHPVVEQVLDNEPFVPNDTEL-DPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVP 64

Query: 71  CDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTST 130
              A I VVD+IFTR+GA+D    G STFM+EM ETA ++   TE SLV++DE+GRGTST
Sbjct: 65  ASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTST 124

Query: 131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           +DG  +A +I   L       TLFATH+HE+  L   +P  +N H
Sbjct: 125 YDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFH 169

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 216

>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs

 Score =  207 bits (528), Expect = 1e-68
 Identities = 87/170 (51%), Positives = 116/170 (68%), Gaps = 4/170 (2%)

Query: 7   VLNQCRHPIVE-LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI 65
            +   RHP++  L  G +++PND+   SG     L+TGPNMGGKSTY+RSIG++V LAQI
Sbjct: 1   EIKGGRHPVLLALTKGETFVPNDINLGSG--RLLLITGPNMGGKSTYLRSIGLAVLLAQI 58

Query: 66  GCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELG 125
           GCFVP +SA+I +VD+IFTR+GA DS   G STFM E+ E   ++   T  SLV+IDELG
Sbjct: 59  GCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELG 118

Query: 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           RGTST +G  +A ++   L   +   TLFATHFHE+A L   +P  +N+H
Sbjct: 119 RGTSTAEGLAIAYAVLEHL-LEKGCRTLFATHFHELADLPEQVPGVKNLH 167

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 202

>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS

 Score =  210 bits (535), Expect = 8e-64
 Identities = 80/164 (48%), Positives = 108/164 (65%), Gaps = 1/164 (0%)

Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP+VE      ++PND+   +      L+TGPNMGGKSTY+R   +   LAQIG FVP 
Sbjct: 569 RHPVVEQVLRTPFVPNDLEM-AHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPA 627

Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           +SA + + D+IFTR+GA+D    G STFM+EM E A ++   TENSLV+ DE+GRGTST+
Sbjct: 628 ESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTY 687

Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DG  +A +IA  L  + +  TLFATH+ E+  L   +P  +NVH
Sbjct: 688 DGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVH 731

[DNA metabolism, DNA replication, recombination, and repair]. Length = 840

>gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog

 Score =  190 bits (484), Expect = 9e-62
 Identities = 74/167 (44%), Positives = 107/167 (64%), Gaps = 1/167 (0%)

Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP++E     S++PND++  +      ++TGPNMGGKS+YIR + +   +AQIG FVP 
Sbjct: 7   RHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66

Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
            SAT+S+ D + TR+GA+DS   G+STFM+E+ ET+ ++  CT  SLVI+DELGRGTST 
Sbjct: 67  SSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTH 126

Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP-TFRNVHES 177
           DG  +A +    L   ++   LF TH+  +  + R    + RN H S
Sbjct: 127 DGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMS 173

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222

>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog

 Score =  184 bits (468), Expect = 3e-59
 Identities = 69/155 (44%), Positives = 103/155 (66%)

Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
             + RHP +      S++PNDV   +      ++TGPNMGGKST +R++ ++V +AQ+G 
Sbjct: 2   FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM 61

Query: 68  FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 127
            VP  S  +S+VD+IFTR+GA D   +G STFM+E+ ETA +++  T +SLVI+DELGRG
Sbjct: 62  DVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRG 121

Query: 128 TSTFDGFGMACSIARELASNRQPFTLFATHFHEIA 162
           TST DG+ +A ++   L    +  TLF+TH+H + 
Sbjct: 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLC 156

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 218

>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog

 Score =  164 bits (417), Expect = 1e-51
 Identities = 65/152 (42%), Positives = 94/152 (61%), Gaps = 3/152 (1%)

Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP++EL    S++PND     G  S  ++TGPN  GKS Y++ + + VFLA IG FVP 
Sbjct: 6   RHPLLELFVD-SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA 64

Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           DSATI +VD+IFTR+ + +S   G S FM+++ + +  ++  T  SLV+IDE G+GT T 
Sbjct: 65  DSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124

Query: 132 DGFGMACSIARELAS--NRQPFTLFATHFHEI 161
           DG G+  +    L       P  + +THFHE+
Sbjct: 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 213

>gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog

 Score =  157 bits (399), Expect = 4e-49
 Identities = 69/166 (41%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 10  QCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFV 69
             RHPI++      +IPND+Y   G   F+++TGPNM GKSTY++ I +   +AQIGCFV
Sbjct: 4   DSRHPILDRDKKN-FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFV 62

Query: 70  PCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTS 129
           P + AT+ + +++ +R+   DS  R +STF  EM ETA ++     +SLV+IDELGRGTS
Sbjct: 63  PAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTS 122

Query: 130 TFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           + DGF ++ +I   L   ++    FATHF +IA +        ++H
Sbjct: 123 SADGFAISLAILECL-IKKESTVFFATHFRDIAAILGNKSCVVHLH 167

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 204

>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog

 Score =  116 bits (292), Expect = 6e-33
 Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
            HP++  +  V+   ND+     + +  L+TG NM GKST++R+IGV+V LAQ G  V  
Sbjct: 6   GHPLIGREKRVA---NDIDM--EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA 60

Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK--KCTENSLVIIDELGRGTS 129
            S  +  V  IFT +  +D    GIS F  E++    +++  K  E  L ++DE+ +GT+
Sbjct: 61  SSFELPPVK-IFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTN 119

Query: 130 TFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           + +    + ++ + L  N+    + +TH  E+A L  +    RN H
Sbjct: 120 SRERQAASAAVLKFLK-NKNTIGIISTHDLELADLLDLDSAVRNYH 164

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 199

>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2

 Score =  112 bits (282), Expect = 2e-31
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
           L + RHP++ LQG    +P D+     +    ++TGPN GGK+  ++++G+   +AQ G 
Sbjct: 2   LREARHPLLPLQGEKV-VPLDIQLGENKRVL-VITGPNAGGKTVTLKTLGLLTLMAQSGL 59

Query: 68  FVPCD-SATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGR 126
            +P    +++ V + IF  +G   S  + +STF   MK  A +++    +SLV++DELG 
Sbjct: 60  PIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGS 119

Query: 127 GTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN 173
           GT   +G  +A +I  EL   R    +  TH+ E+   +       N
Sbjct: 120 GTDPVEGAALAIAILEELL-ERGALVIATTHYGELKAYAYKREGVEN 165

MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 200

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score =  102 bits (256), Expect = 5e-28
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 33/178 (18%)

Query: 15  IVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------Q 64
           IV  +    ++PNDV F  GE S  ++TGPN  GKST + +IG+++  A          +
Sbjct: 2   IVLGRFPSYFVPNDVTF--GEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVK 59

Query: 65  IGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTEN--SLVIID 122
            GC V   SA +     IFTR+         +S    E+   A ++   +     L I+D
Sbjct: 60  AGCIVAAVSAEL-----IFTRL--------QLSGGEKELSALALILALASLKPRPLYILD 106

Query: 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS----RVIPTFRNVHE 176
           E+ RG    DG  +A +I   L    Q   +  TH  E+A L+     +      V++
Sbjct: 107 EIDRGLDPRDGQALAEAILEHLVKGAQ--VIVITHLPELAELADKLIHIKKVITGVYK 162

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score =  108 bits (271), Expect = 1e-27
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 3   TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 62
           TG ++L   RHP+++       +P  +  K  E     +TGPN GGK+  ++++G+   +
Sbjct: 293 TGKIILENARHPLLKEP---KVVPFTLNLKF-EKRVLAITGPNTGGKTVTLKTLGLLALM 348

Query: 63  AQIGCFVPCD-SATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
            Q G  +P +  + I   ++IF  +G   S  + +STF   MK  + ++ K TENSLV+ 
Sbjct: 349 FQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLF 408

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165
           DELG GT   +G  +A SI   L   +    L  TH+ E+  L 
Sbjct: 409 DELGAGTDPDEGSALAISILEYLL-KQNAQVLITTHYKELKALM 451

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

 Score = 97.8 bits (244), Expect = 6e-24
 Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 3   TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 62
            G L L   RHP+++       +PND+     E+   ++TGPN GGK+  ++++G+   +
Sbjct: 290 DGVLELLDARHPLLKED-----VPNDLELGE-ELDRLIITGPNTGGKTVTLKTLGLLRLM 343

Query: 63  AQIGCFVPCDSAT-ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           AQ G  +P    + + V  +IF  +G   S  + +STF   M     +++K   +SLV+ 
Sbjct: 344 AQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEK--ADSLVLF 401

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFA-THFHEIALLSR 166
           DELG GT   +G  +A +I  +L    +P  + A TH+ E+  L+ 
Sbjct: 402 DELGSGTDPDEGAALAIAILEDL--LEKPAKIVATTHYRELKALAA 445

Length = 753

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 94.1 bits (235), Expect = 9e-23
 Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 8/166 (4%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
             G + L Q RHP+++ +  V   P D+     + +  ++TGPN GGK+  ++++G++  
Sbjct: 297 DEGKIDLRQARHPLLDGEKVV---PKDISL-GFDKTVLVITGPNTGGKTVTLKTLGLAAL 352

Query: 62  LAQIGCFVPCDS-ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVI 120
           +A+ G  +P +  + I V  +IF  +G   S  + +STF   M     +++K  +NSLV+
Sbjct: 353 MAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVL 412

Query: 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFA-THFHEIALLS 165
            DELG GT   +G  +A SI   L   ++   + A TH+ E+  L 
Sbjct: 413 FDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALM 456

Length = 782

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 22/157 (14%)

Query: 19  QGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISV 78
            G  +     +  K+GE     + GPN  GKST +R          I   +   S  I +
Sbjct: 10  GGRTALDNVSLTLKAGE--IVALVGPNGSGKSTLLR---------AIAGLLKPTSGEILI 58

Query: 79  VDQIFTRVGAADSQYR-----GISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDG 133
             +   ++   + + R      +S    +    A  +       L+++DE   G      
Sbjct: 59  DGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARAL--LLNPDLLLLDEPTSGLDPASR 116

Query: 134 FGMACSIARELASNRQPFTLFATHFHEIALLS--RVI 168
             +   +       R    +  TH  E+A L+  RVI
Sbjct: 117 ERLLELLRELAEEGRT--VIIVTHDPELAELAADRVI 151

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
KOG0057|consensus	591		100.0
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.98
PRK11147	635	ABC transporter ATPase component; Reviewed	99.98
KOG0058|consensus	716		99.98
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.98
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.98
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.97
KOG0055|consensus	1228		99.97
COG4172	534	ABC-type uncharacterized transport system, duplica	99.97
COG4987	573	CydC ABC-type transport system involved in cytochr	99.97
PLN03232	1495	ABC transporter C family member; Provisional	99.97
PLN03130	1622	ABC transporter C family member; Provisional	99.97
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	99.97
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.97
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.97
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
PTZ00243	1560	ABC transporter; Provisional	99.97
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.97
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.97
PLN03073	718	ABC transporter F family; Provisional	99.97
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.97
PLN03140	1470	ABC transporter G family member; Provisional	99.97
PRK05399	854	DNA mismatch repair protein MutS; Provisional	99.97
PLN03232	1495	ABC transporter C family member; Provisional	99.97
PTZ00243	1560	ABC transporter; Provisional	99.97
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.97
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.97
PRK13409	590	putative ATPase RIL; Provisional	99.97
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.97
PLN03130	1622	ABC transporter C family member; Provisional	99.97
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.97
COG0488	530	Uup ATPase components of ABC transporters with dup	99.97
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.97
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.97
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.97
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.96
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.96
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	99.96
COG0249	843	MutS Mismatch repair ATPase (MutS family) [DNA rep	99.96
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.96
KOG0059|consensus	885		99.96
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.96
KOG0055|consensus	1228		99.96
PLN03140	1470	ABC transporter G family member; Provisional	99.96
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.96
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.96
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.96
KOG0061|consensus	613		99.96
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.96
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.95
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.95
KOG0062|consensus	582		99.95
KOG0056|consensus	790		99.95
KOG0054|consensus	1381		99.95
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.94
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.94
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.94
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.94
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.94
KOG0927|consensus	614		99.94
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.93
KOG0054|consensus	1381		99.93
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.93
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.92
KOG0927|consensus	614		99.92
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.92
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.92
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.92
KOG0219|consensus	902		99.92
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.91
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.91
KOG0220|consensus	867		99.91
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.9
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.9
KOG0065|consensus	1391		99.89
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.88
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.88
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.87
KOG2355|consensus	291		99.87
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.87
KOG0218|consensus	1070		99.87
KOG0062|consensus	582		99.86
KOG0066|consensus	807		99.85
COG4178	604	ABC-type uncharacterized transport system, permeas	99.85
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.85
KOG0066|consensus	807		99.84
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.82
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.81
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.81
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.81
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.8
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.8
KOG0060|consensus	659		99.79
KOG0217|consensus	1125		99.76
KOG0064|consensus	728		99.74
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.72
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.72
KOG0221|consensus	849		99.72
KOG0065|consensus	1391		99.7
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.64
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.57
COG1193	753	Mismatch repair ATPase (MutS family) [DNA replicat	99.57
KOG0063|consensus	592		99.55
PRK13695	174	putative NTPase; Provisional	99.5
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.47
COG3910	233	Predicted ATPase [General function prediction only	99.46
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.41
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.31
PRK06067	234	flagellar accessory protein FlaH; Validated	99.3
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.29
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.27
PHA02562	562	46 endonuclease subunit; Provisional	99.26
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.25
PRK10869	553	recombination and repair protein; Provisional	99.23
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.22
PRK03918	880	chromosome segregation protein; Provisional	99.21
cd01128	249	rho_factor Transcription termination factor rho is	99.2
KOG0063|consensus	592		99.18
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.18
PRK01156	895	chromosome segregation protein; Provisional	99.15
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.14
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.13
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.11
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.07
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.06
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.05
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.03
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.01
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.0
COG4637	373	Predicted ATPase [General function prediction only	98.97
smart00382	148	AAA ATPases associated with a variety of cellular	98.92
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.91
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.9
PRK02224	880	chromosome segregation protein; Provisional	98.85
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.82
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.76
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.73
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.71
PRK00064	361	recF recombination protein F; Reviewed	98.71
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.71
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.69
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.69
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.69
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.69
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.69
COG3044	554	Predicted ATPase of the ABC class [General functio	98.64
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.6
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.58
PRK13764	602	ATPase; Provisional	98.55
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.55
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.54
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.52
PRK04296	190	thymidine kinase; Provisional	98.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.51
PRK09183	259	transposase/IS protein; Provisional	98.5
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.46
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.44
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.43
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	98.41
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.4
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.4
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.4
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.38
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.36
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.36
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.35
PRK11823	446	DNA repair protein RadA; Provisional	98.34
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.31
TIGR00611	365	recf recF protein. All proteins in this family for	98.27
TIGR00767	415	rho transcription termination factor Rho. Members	98.26

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-47  Score=294.04  Aligned_cols=173  Identities=12%  Similarity=0.097  Sum_probs=145.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH--------------HHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS--------------VFL   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i--------------~~~   62 (185)
                      .++++|+...|     +...||++||+++++||+++|+||+|||||||||||        |.|              .++
T Consensus         2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R   76 (240)
T COG1126           2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR   76 (240)
T ss_pred             eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHH
Confidence            46677776655     447899999999999999999999999999999999        332              235


Q ss_pred             HhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          63 AQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        63 ~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      .++| +|||....++                         .+.++|+++|+.+..+.+|++||||||||++|||+| .+|
T Consensus        77 ~~vG-mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P  155 (240)
T COG1126          77 RKVG-MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP  155 (240)
T ss_pred             HhcC-eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence            6778 9999986665                         255778999999999999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      +++|+|||||.+||.-..+.... +..+++ .|.|++++||+ ..+.+.|||+++|++|+++.+++++++
T Consensus       156 ~vmLFDEPTSALDPElv~EVL~v-m~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~  223 (240)
T COG1126         156 KVMLFDEPTSALDPELVGEVLDV-MKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF  223 (240)
T ss_pred             CEEeecCCcccCCHHHHHHHHHH-HHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence            99999999555554444444343 578887 69999999999 778889999999999999999987653

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.9e-45  Score=291.18  Aligned_cols=173  Identities=21%  Similarity=0.239  Sum_probs=144.6

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH----------Hhh
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL----------AQI   65 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~----------~~~   65 (185)
                      +.++++|+...|     +++++++||||++++|++++|+||||||||||+|+|        |.|.+.          ..+
T Consensus         3 ~~i~v~nl~v~y-----~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~I   77 (254)
T COG1121           3 PMIEVENLTVSY-----GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI   77 (254)
T ss_pred             cEEEEeeeEEEE-----CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeE
Confidence            456677766544     223699999999999999999999999999999999        555442          235


Q ss_pred             CceecCCC---CCcc---------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          66 GCFVPCDS---ATIS---------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        66 g~~v~~~~---~~~~---------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      | ||||..   ..+|                           .++++++++|+.+..++++++|||||+||+.||||| +
T Consensus        78 g-YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~  156 (254)
T COG1121          78 G-YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ  156 (254)
T ss_pred             E-EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc
Confidence            6 999965   2222                           367889999999999999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      +|++++|||||+|.|+.....+.++ +..++++ |+||+++||| ..+.+++|+++.+. +++.+.|+++++
T Consensus       157 ~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~  225 (254)
T COG1121         157 NPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV  225 (254)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHH-HHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence            9999999999888888776666664 4888885 9999999999 88999999999995 688899888763

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=9.5e-45  Score=290.67  Aligned_cols=175  Identities=16%  Similarity=0.199  Sum_probs=141.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQ   64 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~   64 (185)
                      .++++|+...|     +++++++|+||++++|++++|+||||||||||||+|        |.|.+            .++
T Consensus         2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk   76 (258)
T COG1120           2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAK   76 (258)
T ss_pred             eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhh
Confidence            35566665444     358899999999999999999999999999999999        33322            233


Q ss_pred             hCceecCCC---CCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDS---ATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~---~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ..+|+||..   +.++                         .+++.++.+++.+..++.+.+||||||||+.|||++ ++
T Consensus        77 ~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~  156 (258)
T COG1120          77 KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQE  156 (258)
T ss_pred             hEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcC
Confidence            334999985   2222                         255668999999999999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      |+++||||||+.+|......+.+. ++.+++++|.|+|+++|| +.+.++||++++|++|++.++|.++++
T Consensus       157 ~~iLLLDEPTs~LDi~~Q~evl~l-l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev  226 (258)
T COG1120         157 TPILLLDEPTSHLDIAHQIEVLEL-LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV  226 (258)
T ss_pred             CCEEEeCCCccccCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence            999999999444444333333343 577776679999999999 889999999999999999999998764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.6e-44  Score=281.30  Aligned_cols=167  Identities=19%  Similarity=0.223  Sum_probs=142.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--------hhCce
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--------QIGCF   68 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--------~~g~~   68 (185)
                      .+++++++..|-     ...+++|+||++.+||+++|+||+|||||||||+|        |.|.+.+        .++ |
T Consensus         3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~-~   76 (248)
T COG1116           3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIG-Y   76 (248)
T ss_pred             eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEE-E
Confidence            455666655552     26799999999999999999999999999999999        5544432        345 9


Q ss_pred             ecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297          69 VPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE  123 (185)
Q Consensus        69 v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE  123 (185)
                      +||++..++                        .+.++++.+|+.+..+++|.+||||||||++|||++ .+|+++||||
T Consensus        77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE  156 (248)
T COG1116          77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE  156 (248)
T ss_pred             EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence            999986665                        366788999999999999999999999999999999 9999999999


Q ss_pred             CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee--eeEEE
Q psy5297         124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN--VHESK  178 (185)
Q Consensus       124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~--g~i~~  178 (185)
                      ||+.+|.+....+.+.+++-+.+ .+.||+++||| .|+..++||+++|.+  |++..
T Consensus       157 PFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~  213 (248)
T COG1116         157 PFGALDALTREELQDELLRLWEE-TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGE  213 (248)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHhhhCEEEEecCCCcceee
Confidence            99999999988888877666665 79999999999 999999999999999  55543

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.6e-43  Score=281.68  Aligned_cols=177  Identities=14%  Similarity=0.132  Sum_probs=149.7

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH----------------HH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS----------------VF   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i----------------~~   61 (185)
                      ++++++...|....++...+++||||+|++|+++||+|++|||||||+|+|        |.|                ..
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~   81 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL   81 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence            567777665654322335699999999999999999999999999999999        333                33


Q ss_pred             HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      +.++| ++||+...++                        ++.++++.+|+.+..+++|++||||||||++||||+ .+|
T Consensus        82 R~~IG-MIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P  160 (339)
T COG1135          82 RQKIG-MIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP  160 (339)
T ss_pred             Hhhcc-EEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence            56778 9999885544                        366788999999999999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||.|||||.+||....++.+++ +.++++.|.||+++||. +-+.++|||+.+|++|+++++|+..+
T Consensus       161 ~iLL~DEaTSALDP~TT~sIL~LL-~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~  228 (339)
T COG1135         161 KILLCDEATSALDPETTQSILELL-KDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE  228 (339)
T ss_pred             CEEEecCccccCChHHHHHHHHHH-HHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence            999999998888777777777654 88888789999999999 56678999999999999999998654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=5.3e-43  Score=276.64  Aligned_cols=172  Identities=19%  Similarity=0.219  Sum_probs=150.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|+...|     +++.+++|+||+|++|++++++||+||||||+||+|        |.|             .++.+
T Consensus         2 I~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~   76 (309)
T COG1125           2 IEFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK   76 (309)
T ss_pred             ceeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHh
Confidence            4566666555     347899999999999999999999999999999999        433             34677


Q ss_pred             hCceecCCCCCcc------------------------hhhHHHhhcCcc--cccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          65 IGCFVPCDSATIS------------------------VVDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        65 ~g~~v~~~~~~~~------------------------~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      +| ||-|....++                        +++++++.+|++  ++.+++|++|||||+||+.+|||+ .+|+
T Consensus        77 IG-YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~  155 (309)
T COG1125          77 IG-YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP  155 (309)
T ss_pred             hh-hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC
Confidence            88 8888764444                        467888999997  478999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||||||+.+||..+..+.+.+ ..+.++.++||+++||| .|+.+++||+.+|++|+++..++|++
T Consensus       156 ilLMDEPFgALDpI~R~~lQ~e~-~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~  222 (309)
T COG1125         156 ILLMDEPFGALDPITRKQLQEEI-KELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDE  222 (309)
T ss_pred             eEeecCCccccChhhHHHHHHHH-HHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHH
Confidence            99999999999999999888876 67776689999999999 99999999999999999999998765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.6e-42  Score=271.97  Aligned_cols=175  Identities=17%  Similarity=0.145  Sum_probs=148.6

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH---------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS---------------   59 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i---------------   59 (185)
                      .+.+++++++..+     +.+.|++|+||++++||+++|+||+|+|||||||+|        |.|               
T Consensus         6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~   80 (263)
T COG1127           6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL   80 (263)
T ss_pred             cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH
Confidence            4567777777665     568899999999999999999999999999999999        333               


Q ss_pred             -HHHHhhCceecCCCCCcc---hhhH----------------------HHhhcCcccc-cccCcCccHHHHHHHHHHHHh
Q psy5297          60 -VFLAQIGCFVPCDSATIS---VVDQ----------------------IFTRVGAADS-QYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        60 -~~~~~~g~~v~~~~~~~~---~~~~----------------------~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~  112 (185)
                       .++.++| ++||....++   ++++                      -++.+|+... .++.|++|||||++|+++|||
T Consensus        81 ~~ir~r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA  159 (263)
T COG1127          81 YEIRKRMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA  159 (263)
T ss_pred             HHHHhhee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence             2345677 9999885444   2222                      2466788777 899999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      + .+|+++++||||+|+||.....+.++| ..+++.-+.|++++||| ..+..+|||++++.+|+|.++|++++
T Consensus       160 ialdPell~~DEPtsGLDPI~a~~~~~LI-~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e  232 (263)
T COG1127         160 IALDPELLFLDEPTSGLDPISAGVIDELI-RELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE  232 (263)
T ss_pred             HhcCCCEEEecCCCCCCCcchHHHHHHHH-HHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence            9 999999999999999999877777755 77777679999999999 89999999999999999999998865

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.9e-42  Score=272.59  Aligned_cols=169  Identities=17%  Similarity=0.187  Sum_probs=132.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH------------------------HH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS------------------------VF   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i------------------------~~   61 (185)
                      ++++++++.|-.-. ....+|+++||++++||+++|+||+||||||||++||.+                        .+
T Consensus         2 i~~~~v~k~y~~~~-~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136           2 IELKNVSKIYGLGG-EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             cEEeeeEEEeccCC-cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence            34555555443211 124699999999999999999999999999999999332                        12


Q ss_pred             -HHhhCceecCCCCCcc---h---------------------hhHHHhhcCcccccc-cCcCccHHHHHHHHHHHHhC-C
Q psy5297          62 -LAQIGCFVPCDSATIS---V---------------------VDQIFTRVGAADSQY-RGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        62 -~~~~g~~v~~~~~~~~---~---------------------~~~~l~~~~l~~~~~-~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                       +.++| ||||....++   +                     +..+++.+|+.+..+ ++|++||||||||++||||+ .
T Consensus        81 R~~~iG-fvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~  159 (226)
T COG1136          81 RRKKIG-FVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN  159 (226)
T ss_pred             HHHhEE-EECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence             34567 9999884443   2                     345567779987766 88999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEE
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~  177 (185)
                      +|+++|.||||.++|......+... +..++++.|.|+|++|||.+++..|||++.+++|++.
T Consensus       160 ~P~iilADEPTgnLD~~t~~~V~~l-l~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         160 NPKIILADEPTGNLDSKTAKEVLEL-LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE  221 (226)
T ss_pred             CCCeEEeeCccccCChHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence            9999999999555555554444443 4677665799999999999999999999999999953

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.6e-43  Score=270.87  Aligned_cols=174  Identities=16%  Similarity=0.180  Sum_probs=149.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQ   64 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~   64 (185)
                      .+.+.++.+.|     +++.|+++|||++++||+++|+|||||||||.+.++        |.|.+            +++
T Consensus         4 ~L~a~~l~K~y-----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr   78 (243)
T COG1137           4 TLVAENLAKSY-----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR   78 (243)
T ss_pred             EEEehhhhHhh-----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence            45566665555     457899999999999999999999999999999999        44432            344


Q ss_pred             hC-ceecCCCCC---cc-----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          65 IG-CFVPCDSAT---IS-----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        65 ~g-~~v~~~~~~---~~-----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      .| +|+||++.-   ++                       .++++++.|++.+..+.+..+||||+|+|+.|||+| .+|
T Consensus        79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P  158 (243)
T COG1137          79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP  158 (243)
T ss_pred             cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence            43 399998832   22                       255788899999999999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      +++||||||+|.||.....+.+.+ .+|+. +|..|+++.|+ .+...+|||.+++.+|++.++|+++++
T Consensus       159 ~fiLLDEPFAGVDPiaV~dIq~iI-~~L~~-rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei  226 (243)
T COG1137         159 KFILLDEPFAGVDPIAVIDIQRII-KHLKD-RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI  226 (243)
T ss_pred             CEEEecCCccCCCchhHHHHHHHH-HHHHh-CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence            999999999999999999888855 88887 79999999999 999999999999999999999998764

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4.7e-42  Score=282.58  Aligned_cols=171  Identities=19%  Similarity=0.232  Sum_probs=142.0

Q ss_pred             EEEcccCCceeeecCC-ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGG-VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~-~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i------------~~~~~   64 (185)
                      +++++++..|     + .+.+++||||++++|++++|+||||||||||||+|        |.|            .++.+
T Consensus         5 i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~   79 (293)
T COG1131           5 IEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRR   79 (293)
T ss_pred             eeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhh
Confidence            4455555544     3 47899999999999999999999999999999999        332            23456


Q ss_pred             hCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297          65 IGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV  119 (185)
Q Consensus        65 ~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll  119 (185)
                      +| |+||.+..++                        .++++++.+++.+..++++++||+|||||+.||+++ .+|+++
T Consensus        80 ig-y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll  158 (293)
T COG1131          80 IG-YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL  158 (293)
T ss_pred             eE-EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence            77 9999884333                        255688899998867888999999999999999999 999999


Q ss_pred             EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ||||||+|+|+.....+.+.+ +.++++.+.||+++||. .++..+||++++|++|++++.++.+
T Consensus       159 iLDEPt~GLDp~~~~~~~~~l-~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~  222 (293)
T COG1131         159 ILDEPTSGLDPESRREIWELL-RELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE  222 (293)
T ss_pred             EECCCCcCCCHHHHHHHHHHH-HHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence            999998888887766666644 77776434899999998 8999999999999999999998654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=5.7e-43  Score=291.31  Aligned_cols=178  Identities=18%  Similarity=0.168  Sum_probs=147.1

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |..+.++++++++.|     +...+++|+||+|++||+++|+|||||||||+||+|        |.|.+           
T Consensus         1 ~~~~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~   75 (352)
T COG3842           1 MPKPALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE   75 (352)
T ss_pred             CCCceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh
Confidence            345678888887766     347899999999999999999999999999999999        54533           


Q ss_pred             HHhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          62 LAQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      .+.+| +|||+...+|                         ++.++++.+++++..++++++||||||||+++||+| .+
T Consensus        76 kR~ig-~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~  154 (352)
T COG3842          76 KRPIG-MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE  154 (352)
T ss_pred             hcccc-eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence            45667 9999986555                         355678888999999999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      |+++|||||++++|..-+..+... ++.+.++.|.|.|++||| .++..++||+.+|++|++...|+|+++
T Consensus       155 P~vLLLDEPlSaLD~kLR~~mr~E-lk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei  224 (352)
T COG3842         155 PKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI  224 (352)
T ss_pred             cchhhhcCcccchhHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence            999999999444433333333333 356666679999999999 999999999999999999999988764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9e-42  Score=267.07  Aligned_cols=176  Identities=14%  Similarity=0.131  Sum_probs=147.3

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH----------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS----------------   59 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i----------------   59 (185)
                      ..++++++...|.    +++.+++||||+|++||+++|+||+|||||||||+|        |.|                
T Consensus         2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr   77 (258)
T COG3638           2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR   77 (258)
T ss_pred             ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence            3577788776664    357899999999999999999999999999999999        322                


Q ss_pred             HHHHhhCceecCCCCCcc--------------------------------hhhHHHhhcCcccccccCcCccHHHHHHHH
Q psy5297          60 VFLAQIGCFVPCDSATIS--------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETA  107 (185)
Q Consensus        60 ~~~~~~g~~v~~~~~~~~--------------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~  107 (185)
                      .++.++| |++|.+...+                                .+-+.|+++|+.+....+.++|||||+||+
T Consensus        78 ~~r~~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV  156 (258)
T COG3638          78 KLRRDIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV  156 (258)
T ss_pred             HHHHhce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence            2357788 9999875443                                133567888999999999999999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      +|||+| ++|+++|.|||.+++||......... ++.++++.|.|+|++.|+ ..+.++|||++-|++|+++++|++.++
T Consensus       157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~-l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el  235 (258)
T COG3638         157 AIARALVQQPKIILADEPVASLDPESAKKVMDI-LKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL  235 (258)
T ss_pred             HHHHHHhcCCCEEecCCcccccChhhHHHHHHH-HHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence            999999 99999999999777666665555554 477777789999999999 777789999999999999999988653

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=2.5e-41  Score=279.98  Aligned_cols=176  Identities=18%  Similarity=0.194  Sum_probs=143.2

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------   60 (185)
                      |..+.++++++...|     +...+++|+||++++|++++|+||||||||||+|+|        |.+.            
T Consensus         3 ~~~~~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~   77 (306)
T PRK13537          3 MSVAPIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH   77 (306)
T ss_pred             CCCceEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHH
Confidence            344567788877655     236799999999999999999999999999999999        3332            


Q ss_pred             HHHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          61 FLAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        61 ~~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++.++| |+||++..+   ++                     +.++++.+++.+..++++++||+|||||++||+++ .+
T Consensus        78 ~~~~ig-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~  156 (306)
T PRK13537         78 ARQRVG-VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND  156 (306)
T ss_pred             HHhcEE-EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence            234567 999987332   21                     23556778888888999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+|+|+.....+.+. +..+++ .|.|||++||+ .++.++||++++|++|++++.+++++
T Consensus       157 P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~  224 (306)
T PRK13537        157 PDVLVLDEPTTGLDPQARHLMWER-LRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA  224 (306)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHH-HHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999999777777666655554 466665 58999999999 88899999999999999999987654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.9e-41  Score=260.13  Aligned_cols=173  Identities=14%  Similarity=0.158  Sum_probs=141.5

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------------HH-----------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------------GV-----------   58 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------------G~-----------   58 (185)
                      .+.++++++..-|     +.+.+|+|||++|+++++++++||+|||||||||++             |.           
T Consensus         5 ~~~~~~~~l~~yY-----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~   79 (253)
T COG1117           5 IPAIEVRDLNLYY-----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP   79 (253)
T ss_pred             cceeEecceeEEE-----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence            3456666665433     347799999999999999999999999999999999             22           


Q ss_pred             ----HHHHHhhCceecCCCCCcc--hhhH---------------------HHhhcCc----ccccccCcCccHHHHHHHH
Q psy5297          59 ----SVFLAQIGCFVPCDSATIS--VVDQ---------------------IFTRVGA----ADSQYRGISTFMMEMKETA  107 (185)
Q Consensus        59 ----i~~~~~~g~~v~~~~~~~~--~~~~---------------------~l~~~~l----~~~~~~~~~~lS~g~~q~~  107 (185)
                          +.++.++| +|||.+..++  ++++                     .++...+    .+.+++....||||||||+
T Consensus        80 ~~d~~~lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL  158 (253)
T COG1117          80 KVDVVELRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL  158 (253)
T ss_pred             CCCHHHHHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence                23467888 9999985544  3332                     2333333    2456788889999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|||++ .+|++||||||||++||.....+.+++ ..|++  ..||+++||+ ..+++++|+..++..|++++.+++++
T Consensus       159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi-~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~  234 (253)
T COG1117         159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELI-TELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK  234 (253)
T ss_pred             HHHHHHhcCCcEEEecCcccccCchhHHHHHHHH-HHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence            999999 999999999999999999988887765 77775  7999999999 88999999999999999999998765

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=8.7e-41  Score=280.10  Aligned_cols=174  Identities=22%  Similarity=0.209  Sum_probs=140.3

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HH
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FL   62 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~   62 (185)
                      ...++++|+...|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.+.            +.
T Consensus        39 ~~~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~  113 (340)
T PRK13536         39 TVAIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR  113 (340)
T ss_pred             ceeEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHh
Confidence            3345666665544     346799999999999999999999999999999999        3332            22


Q ss_pred             HhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          63 AQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        63 ~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      ..+| |+||+...+   ++                     ++++++.+++.+..++++++||+|||||++||+++ .+|+
T Consensus       114 ~~ig-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~  192 (340)
T PRK13536        114 ARIG-VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ  192 (340)
T ss_pred             ccEE-EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            3456 999986322   21                     23456778888888999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||++++|++|++++.+++++
T Consensus       193 lLiLDEPt~gLD~~~r~~l~~~l-~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~  258 (340)
T PRK13536        193 LLILDEPTTGLDPHARHLIWERL-RSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA  258 (340)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999998777777666665544 66665 58999999999 88899999999999999999987654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-41  Score=282.32  Aligned_cols=174  Identities=18%  Similarity=0.156  Sum_probs=141.6

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~   65 (185)
                      .++++|+.+.|-.     ..+++|+||++++||+++|+||||||||||||+|        |.|.+           .+.+
T Consensus         3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~i   77 (338)
T COG3839           3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI   77 (338)
T ss_pred             EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCE
Confidence            4677777766622     2299999999999999999999999999999999        55544           2455


Q ss_pred             CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + +|||++..++                        ++.++.+.+++++.+++++++||||||||+++|||+ .+|+++|
T Consensus        78 a-mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L  156 (338)
T COG3839          78 A-MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL  156 (338)
T ss_pred             E-EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE
Confidence            6 9999985554                        245667788999999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      ||||+|++|..-+..+... +..+.++.+.|+|++||| .|+..++||+.+|++|++...|++.++
T Consensus       157 ~DEPlSnLDa~lR~~mr~e-i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el  221 (338)
T COG3839         157 LDEPLSNLDAKLRVLMRSE-IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL  221 (338)
T ss_pred             ecCchhHhhHHHHHHHHHH-HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence            9999444433333333333 466777679999999999 999999999999999999999988653

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-41  Score=274.26  Aligned_cols=161  Identities=18%  Similarity=0.139  Sum_probs=137.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCcc---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATIS---   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~~---   77 (185)
                      ..+++||+++|+.||.++|+||||||||||||+|        |.|.+              .+++| |++|++..++   
T Consensus        15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG-fvFQ~YALF~Hmt   93 (345)
T COG1118          15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG-FVFQHYALFPHMT   93 (345)
T ss_pred             ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee-EEEechhhcccch
Confidence            5689999999999999999999999999999999        43322              24567 9999984333   


Q ss_pred             -----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          78 -----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        78 -----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                                             .+.++++.+.+++..+++|.+||||||||+++|||+ .+|++|||||||.++|..-.
T Consensus        94 Va~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr  173 (345)
T COG1118          94 VADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR  173 (345)
T ss_pred             HHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHH
Confidence                                   355678888889999999999999999999999999 99999999999777666666


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      ..+...+ ..+.++.|.|++++||| +++.++|||+++|++|+|...++++++
T Consensus       174 ~~lr~wL-r~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         174 KELRRWL-RKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             HHHHHHH-HHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            6665554 66666579999999999 999999999999999999999988764

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.9e-41  Score=258.10  Aligned_cols=172  Identities=16%  Similarity=0.190  Sum_probs=138.7

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH--------------------HHHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS--------------------VFLAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i--------------------~~~~~~   65 (185)
                      +++++++..|-..    ..++.||||.+++|++++|+|||||||||+||+|+..                    .++.++
T Consensus         2 l~v~~l~K~y~~~----v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~I   77 (245)
T COG4555           2 LEVTDLTKSYGSK----VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI   77 (245)
T ss_pred             eeeeehhhhccCH----HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhc
Confidence            4566666655331    2389999999999999999999999999999999543                    234566


Q ss_pred             CceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      | .++.....+   +                     ..+++.+.+++.+.+++++..||-|||||+.||||+ ++|++++
T Consensus        78 G-Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v  156 (245)
T COG4555          78 G-VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV  156 (245)
T ss_pred             c-eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence            6 555333221   1                     355667888999999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||++|+|......+.+. +.++++ .|.+||++||. .+++++||+++++++|++++.|+.+.
T Consensus       157 lDEP~sGLDi~~~r~~~df-i~q~k~-egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~  219 (245)
T COG4555         157 LDEPTSGLDIRTRRKFHDF-IKQLKN-EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEA  219 (245)
T ss_pred             EcCCCCCccHHHHHHHHHH-HHHhhc-CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence            9999777766665555553 477776 69999999998 99999999999999999999998653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=8e-41  Score=262.93  Aligned_cols=179  Identities=16%  Similarity=0.086  Sum_probs=141.6

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-------------   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-------------   62 (185)
                      +.++++|+...|-.... ..+++++|||++.+||+++|+|++|||||||.|+|        |.|.+.             
T Consensus         2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~   80 (252)
T COG1124           2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF   80 (252)
T ss_pred             ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence            35777777765533211 12599999999999999999999999999999999        555432             


Q ss_pred             -HhhCceecCCCC-Cc----c-------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          63 -AQIGCFVPCDSA-TI----S-------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        63 -~~~g~~v~~~~~-~~----~-------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                       ..+- +|||++. .+    +                   .+.++++.+|+. ..+++++.+|||||+||++||||+ .+
T Consensus        81 ~~~VQ-mVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~  159 (252)
T COG1124          81 YRPVQ-MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE  159 (252)
T ss_pred             cccee-EEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence             2233 8999881 11    1                   156778889986 457999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      |++||+|||+|.+|..-.+.+... +..++++++.|+|++||| .-+..+|||+++|++|++++.+..+++
T Consensus       160 PklLIlDEptSaLD~siQa~Ilnl-L~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l  229 (252)
T COG1124         160 PKLLILDEPTSALDVSVQAQILNL-LLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL  229 (252)
T ss_pred             CCEEEecCchhhhcHHHHHHHHHH-HHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh
Confidence            999999999666666554444443 477777789999999999 777889999999999999999887653

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-41  Score=266.74  Aligned_cols=174  Identities=14%  Similarity=0.102  Sum_probs=142.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH--------------HHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS--------------VFL   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i--------------~~~   62 (185)
                      .+.++++++.|   .++ ..+++|+||++++|+.++|+||||||||||++++        |.|              .++
T Consensus         3 ~i~~~~l~~~y---~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~   78 (235)
T COG1122           3 MIEAENLSFRY---PGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR   78 (235)
T ss_pred             eEEEEEEEEEc---CCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhh
Confidence            34555555443   233 6899999999999999999999999999999999        333              123


Q ss_pred             HhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          63 AQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        63 ~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      .++| ||+|++...-                         ++.++++.+++.+..++++.+||||||||++||.++ .+|
T Consensus        79 ~~vG-~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P  157 (235)
T COG1122          79 QKVG-LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP  157 (235)
T ss_pred             cceE-EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence            4567 9999883211                         366778889999999999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+|+|+.....+.+. +..++++.|.|+|++||| +.+..+|||+++|++|+++.+|++.+
T Consensus       158 ~iliLDEPta~LD~~~~~~l~~~-l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~  225 (235)
T COG1122         158 EILLLDEPTAGLDPKGRRELLEL-LKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAE  225 (235)
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHH-HHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHH
Confidence            99999999777766665555554 477776457999999999 88899999999999999999998654

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.4e-41  Score=280.24  Aligned_cols=176  Identities=16%  Similarity=0.148  Sum_probs=140.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------   61 (185)
                      +++++++..|-. .++...+++|+||++++|++++|+||||||||||+|+|        |.|.+                
T Consensus         2 I~~~~lsk~y~~-~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         2 IKLSNITKVFHQ-GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             EEEEEEEEEECC-CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            566677654421 11124799999999999999999999999999999999        43321                


Q ss_pred             HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      +..++ |+||+...++                        .+.++++.+++.+..++++++||+|||||++|||++ .+|
T Consensus        81 r~~Ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P  159 (343)
T TIGR02314        81 RRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             hcCEE-EEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence            23456 9999863332                        134567888999999999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++|+||||+++|+.....+...+ +.++++.|.|||++||+ ..+.++||++++|++|++++.+++++
T Consensus       160 ~iLLlDEPts~LD~~t~~~i~~lL-~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~  227 (343)
T TIGR02314       160 KVLLCDEATSALDPATTQSILELL-KEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE  227 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999997777776666665544 67665458999999999 77789999999999999999887643

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.4e-41  Score=263.07  Aligned_cols=172  Identities=18%  Similarity=0.241  Sum_probs=149.5

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------HHhhCc
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------LAQIGC   67 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------~~~~g~   67 (185)
                      .+++.+++..|     +.+.+++|+||++++|++.+++|||||||||.+|+|        |.|.|         .+.+| 
T Consensus         2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-   75 (300)
T COG4152           2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-   75 (300)
T ss_pred             ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-
Confidence            36677777666     447899999999999999999999999999999999        55544         34678 


Q ss_pred             eecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEe
Q psy5297          68 FVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIID  122 (185)
Q Consensus        68 ~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllD  122 (185)
                      |+|.++..++                        .++.+++++++.+...+++.+||.|++|++.+..++ ++|+++|||
T Consensus        76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD  155 (300)
T COG4152          76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD  155 (300)
T ss_pred             cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence            9999885554                        256788999999999999999999999999988888 999999999


Q ss_pred             CCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       123 EP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||+||...+.+...+ ..+++ .|+|||++||. ..++++||++.+|++|+.+.+|+.++
T Consensus       156 EPFSGLDPVN~elLk~~I-~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~  216 (300)
T COG4152         156 EPFSGLDPVNVELLKDAI-FELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED  216 (300)
T ss_pred             CCccCCChhhHHHHHHHH-HHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHH
Confidence            999999999988777766 56666 69999999998 89999999999999999999987543

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-41  Score=281.56  Aligned_cols=174  Identities=17%  Similarity=0.131  Sum_probs=141.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~   65 (185)
                      .+++++++..|-    +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+           ...+
T Consensus         3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i   78 (356)
T PRK11650          3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI   78 (356)
T ss_pred             EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence            467777765441    235799999999999999999999999999999999        44332           2345


Q ss_pred             CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + |+||++..++                        .++++++.+++.+..++++.+||+|||||++|||++ .+|+++|
T Consensus        79 g-~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL  157 (356)
T PRK11650         79 A-MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL  157 (356)
T ss_pred             E-EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            6 9999873332                        134567788999999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||++++|......+...+ +.+.++.|.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus       158 LDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~  221 (356)
T PRK11650        158 FDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVE  221 (356)
T ss_pred             EeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence            99997776666555555544 56665468999999999 88999999999999999999887754

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-40  Score=280.14  Aligned_cols=174  Identities=17%  Similarity=0.153  Sum_probs=141.5

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHh
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQ   64 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~   64 (185)
                      +.++++++++.|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+           ...
T Consensus         5 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~   79 (351)
T PRK11432          5 NFVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD   79 (351)
T ss_pred             cEEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence            456777776655     236799999999999999999999999999999999        44432           234


Q ss_pred             hCceecCCCCCcc---h---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297          65 IGCFVPCDSATIS---V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV  119 (185)
Q Consensus        65 ~g~~v~~~~~~~~---~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll  119 (185)
                      ++ |+||++..++   +                     ++++++.+++.+..++++.+||+|||||++|||++ .+|+++
T Consensus        80 ig-~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL  158 (351)
T PRK11432         80 IC-MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL  158 (351)
T ss_pred             EE-EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            56 9999874332   1                     33566778888889999999999999999999999 999999


Q ss_pred             EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||++++|......+...+ ..+.++.+.|+|++||| .++..+||++++|++|++...+++++
T Consensus       159 LLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~  223 (351)
T PRK11432        159 LFDEPLSNLDANLRRSMREKI-RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE  223 (351)
T ss_pred             EEcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999997776666655555544 56655468999999999 88889999999999999999888764

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.4e-40  Score=265.63  Aligned_cols=159  Identities=18%  Similarity=0.155  Sum_probs=128.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------HHHhhCceecCCCCCc--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------FLAQIGCFVPCDSATI--   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~~~~~g~~v~~~~~~~--   76 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.                +...++ |+||++..+  
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~   91 (235)
T cd03261          13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG-MLFQSGALFDS   91 (235)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE-EEccCcccCCC
Confidence            5799999999999999999999999999999999        3321                122345 899876221  


Q ss_pred             -ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          77 -SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        77 -~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                       ++                      +.++++.+++.+..++++++||+|||||++||+++ .+|+++||||||+|+|+..
T Consensus        92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~  171 (235)
T cd03261          92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA  171 (235)
T ss_pred             CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence             21                      23456777888778999999999999999999999 9999999999977776666


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ...+.+.+ +.++++.+.|||++||+ .++..+||++++|++|+++..++++
T Consensus       172 ~~~l~~~l-~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~  222 (235)
T cd03261         172 SGVIDDLI-RSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE  222 (235)
T ss_pred             HHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHH
Confidence            55555544 55554348999999999 7788899999999999999887654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-40  Score=280.43  Aligned_cols=173  Identities=18%  Similarity=0.168  Sum_probs=141.5

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~   65 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+           ...+
T Consensus         4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~i   78 (353)
T TIGR03265         4 YLSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY   78 (353)
T ss_pred             EEEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence            46777776655     235689999999999999999999999999999999        43332           2345


Q ss_pred             CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + |+||++..++                        .++++++.+++++..++++.+||+|||||++|||++ .+|+++|
T Consensus        79 g-~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL  157 (353)
T TIGR03265        79 G-IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL  157 (353)
T ss_pred             E-EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            5 9999874432                        245567888999999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||++++|......+...+ +.+.++.+.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus       158 LDEP~s~LD~~~r~~l~~~L-~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~  221 (353)
T TIGR03265       158 LDEPLSALDARVREHLRTEI-RQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQE  221 (353)
T ss_pred             EcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99997776666555555544 56655468999999999 88899999999999999999988754

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=1.9e-40  Score=274.29  Aligned_cols=173  Identities=21%  Similarity=0.201  Sum_probs=138.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LA   63 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~   63 (185)
                      ..+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+            ..
T Consensus         3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~   77 (303)
T TIGR01288         3 VAIDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV   77 (303)
T ss_pred             cEEEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhh
Confidence            457777776655     235799999999999999999999999999999999        43322            23


Q ss_pred             hhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297          64 QIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSL  118 (185)
Q Consensus        64 ~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l  118 (185)
                      +++ |+||++..+   ++                     ++++++.+++.+..++++++||+|||||++||+++ .+|++
T Consensus        78 ~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  156 (303)
T TIGR01288        78 AIG-VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL  156 (303)
T ss_pred             cEE-EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            456 999886322   21                     22456677888788999999999999999999999 99999


Q ss_pred             EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +||||||+|+|+.....+...+ ..+++ .|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       157 llLDEPt~gLD~~~~~~l~~~l-~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  221 (303)
T TIGR01288       157 LILDEPTTGLDPHARHLIWERL-RSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA  221 (303)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999997777766655555544 66665 58999999999 78889999999999999998887653

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.7e-40  Score=262.69  Aligned_cols=160  Identities=19%  Similarity=0.186  Sum_probs=129.7

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCCCCc---c--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDSATI---S--   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~~~~---~--   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+            ...++ |+||++..+   +  
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~   91 (220)
T cd03265          13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG-IVFQDLSVDDELTGW   91 (220)
T ss_pred             EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEE-EecCCccccccCcHH
Confidence            5799999999999999999999999999999999        33221            22345 888886222   1  


Q ss_pred             -------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297          78 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA  137 (185)
Q Consensus        78 -------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~  137 (185)
                                         .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.
T Consensus        92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~  171 (220)
T cd03265          92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW  171 (220)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence                               134556778888888999999999999999999999 999999999997777666655555


Q ss_pred             HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.+ ..+.++.+.+||++||+ .++..+||++++|++|+++..+++++
T Consensus       172 ~~l-~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         172 EYI-EKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             HHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence            544 55555348899999999 78889999999999999998877654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=9e-40  Score=270.19  Aligned_cols=160  Identities=19%  Similarity=0.191  Sum_probs=132.2

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCc---c-
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATI---S-   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~---~-   77 (185)
                      .+.+++|+||++++|++++|+||||||||||+|+|        |.|.            +..+++ |+||++..+   + 
T Consensus         5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv   83 (302)
T TIGR01188         5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDEDLTG   83 (302)
T ss_pred             CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCCCCcH
Confidence            35799999999999999999999999999999999        4332            233466 999986322   2 


Q ss_pred             --------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297          78 --------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM  136 (185)
Q Consensus        78 --------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~  136 (185)
                                          .++++++.+++.+..++++++||+|||||++||+++ .+|+++||||||+|+|+.....+
T Consensus        84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  163 (302)
T TIGR01188        84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI  163 (302)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence                                134567788888888999999999999999999999 99999999999777777665555


Q ss_pred             HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+. ++.+++ .|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       164 ~~~-l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  210 (302)
T TIGR01188       164 WDY-IRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEE  210 (302)
T ss_pred             HHH-HHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            554 466665 58999999999 88889999999999999998887653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.6e-41  Score=263.49  Aligned_cols=176  Identities=19%  Similarity=0.178  Sum_probs=143.1

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LA   63 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~   63 (185)
                      +.++++++...|     |+-.+++||||++++|++++|+||||||||||+++|        |.|.+            .+
T Consensus         3 ~lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ia   77 (250)
T COG0411           3 PLLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA   77 (250)
T ss_pred             ceeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHH
Confidence            445556655544     446799999999999999999999999999999999        33322            11


Q ss_pred             hhC-ceecCCCC---Ccc---------------------------------hhhHHHhhcCcccccccCcCccHHHHHHH
Q psy5297          64 QIG-CFVPCDSA---TIS---------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKET  106 (185)
Q Consensus        64 ~~g-~~v~~~~~---~~~---------------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~  106 (185)
                      +.| ...||...   .++                                 .+.++++.+|+.+.++++.++||+|+|++
T Consensus        78 r~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~  157 (250)
T COG0411          78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRR  157 (250)
T ss_pred             hccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHH
Confidence            122 12333321   111                                 35567888999999999999999999999


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.|||++ .+|++||||||.+|+++.+...+.+.+ ..++++.|.||+++.|| ..+..+|||+++|+.|+++++|+|++
T Consensus       158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i-~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e  236 (250)
T COG0411         158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELI-RELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE  236 (250)
T ss_pred             HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence            9999999 999999999999999999988888865 78876567999999999 77889999999999999999999976


Q ss_pred             C
Q psy5297         185 V  185 (185)
Q Consensus       185 ~  185 (185)
                      +
T Consensus       237 V  237 (250)
T COG0411         237 V  237 (250)
T ss_pred             H
Confidence            4

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=3.6e-40  Score=279.32  Aligned_cols=174  Identities=16%  Similarity=0.110  Sum_probs=140.1

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHh
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQ   64 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~   64 (185)
                      +.++++++...|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+           ...
T Consensus        13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~   87 (375)
T PRK09452         13 PLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH   87 (375)
T ss_pred             ceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence            346666666544     235699999999999999999999999999999999        43322           233


Q ss_pred             hCceecCCCCCcc---h---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297          65 IGCFVPCDSATIS---V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV  119 (185)
Q Consensus        65 ~g~~v~~~~~~~~---~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll  119 (185)
                      ++ |+||++..++   +                     ++++++.+++.+..++++.+||+|||||++|||++ .+|+++
T Consensus        88 ig-~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll  166 (375)
T PRK09452         88 VN-TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL  166 (375)
T ss_pred             EE-EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            55 9999874332   1                     34456778888889999999999999999999999 999999


Q ss_pred             EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||++++|......+...+ +.+.++.+.|+|++||| .++..+||++++|++|++...+++++
T Consensus       167 LLDEP~s~LD~~~r~~l~~~L-~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~  231 (375)
T PRK09452        167 LLDESLSALDYKLRKQMQNEL-KALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE  231 (375)
T ss_pred             EEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999997776666655555544 66665468999999999 88899999999999999999887654

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=3.7e-40  Score=259.48  Aligned_cols=156  Identities=21%  Similarity=0.184  Sum_probs=125.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S---   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~---   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+           ...++ |+||++..+   +   
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~~   91 (213)
T cd03259          13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG-MVFQDYALFPHLTVAE   91 (213)
T ss_pred             eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE-EEcCchhhccCCcHHH
Confidence            5799999999999999999999999999999999        43322           12345 889875221   1   


Q ss_pred             ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                                        .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.+
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~  171 (213)
T cd03259          92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE  171 (213)
T ss_pred             HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                              123566778888888999999999999999999999 9999999999977766655555555


Q ss_pred             HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297         139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      .+ ..++++.+.|||++||+ .++.++||++++|++|+++..|
T Consensus       172 ~l-~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         172 EL-KELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HH-HHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            44 55554358999999999 7788999999999999987643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=9e-40  Score=275.20  Aligned_cols=172  Identities=18%  Similarity=0.181  Sum_probs=139.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG   66 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g   66 (185)
                      +++++++..|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+           ...++
T Consensus         3 L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~   77 (353)
T PRK10851          3 IEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG   77 (353)
T ss_pred             EEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEE
Confidence            6677776544     235699999999999999999999999999999999        44433           12355


Q ss_pred             ceecCCCCCcc----------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          67 CFVPCDSATIS----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        67 ~~v~~~~~~~~----------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                       |+||++..++                            .+.++++.+++.+..++++.+||+|||||++|||++ .+|+
T Consensus        78 -~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~  156 (353)
T PRK10851         78 -FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ  156 (353)
T ss_pred             -EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence             8998763221                            123457778888889999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++|||||++|+|......+.+.+ ..+.++.+.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       157 llLLDEP~s~LD~~~r~~l~~~L-~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~  223 (353)
T PRK10851        157 ILLLDEPFGALDAQVRKELRRWL-RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ  223 (353)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999997777776666555544 66665458999999999 88899999999999999999887654

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-39  Score=266.89  Aligned_cols=177  Identities=17%  Similarity=0.142  Sum_probs=137.9

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------------HH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------FL   62 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------~~   62 (185)
                      ++++++...|-......+.+++|+||++++|++++|+||||||||||+|+|        |.|.               +.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence            667777665522111124699999999999999999999999999999999        4331               12


Q ss_pred             HhhCceecCCCC--C--cc---------------------hhhHHHhhcCcc--cccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          63 AQIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        63 ~~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      .+++ |+||++.  .  .+                     .+.++++.+++.  +..++++.+||+|||||++||+++ .
T Consensus        83 ~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         83 KKVG-LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             hceE-EEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            3456 9999751  1  12                     134567778886  568999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++|||||++|+|+.....+...+ ..++++.|.|||++||+ .++..+||++++|++|++++.+++++
T Consensus       162 ~P~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~  231 (287)
T PRK13637        162 EPKILILDEPTAGLDPKGRDEILNKI-KELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE  231 (287)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999997777776655555544 66665358999999999 77788999999999999999887653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=8.9e-40  Score=258.58  Aligned_cols=159  Identities=16%  Similarity=0.191  Sum_probs=128.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------HhhCceecCCCCCc---ch-----
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------AQIGCFVPCDSATI---SV-----   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------~~~g~~v~~~~~~~---~~-----   78 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+.        ..++ |+||.+..+   ++     
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~   95 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRG-YVFQQDALLPWLTVLDNVA   95 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEE-EEecccccccCCCHHHHHH
Confidence            5799999999999999999999999999999999        444331        2345 888875221   21     


Q ss_pred             ----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHH
Q psy5297          79 ----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIA  141 (185)
Q Consensus        79 ----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il  141 (185)
                                      +.++++.+++.+..++++++||+|||||++||+++ .+|+++||||||+|+|+.....+.+.+ 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l-  174 (220)
T cd03293          96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL-  174 (220)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH-
Confidence                            23456777888778899999999999999999999 999999999997777776666555544 


Q ss_pred             HHHHhcCCCeEEEecCh-hHHHHhhcccccee--eeeEEEEeccC
Q psy5297         142 RELASNRQPFTLFATHF-HEIALLSRVIPTFR--NVHESKYLYHT  183 (185)
Q Consensus       142 ~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~--~g~i~~~~~~~  183 (185)
                      ..+.++.+.|||++||+ .++..+||++++|+  +|+++..++-+
T Consensus       175 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         175 LDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence            55543358999999999 77889999999999  79998887643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=5.8e-40  Score=276.79  Aligned_cols=161  Identities=17%  Similarity=0.142  Sum_probs=135.0

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI   76 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~   76 (185)
                      .+.+++|+||++++||+++|+||||||||||+|+|        |.|.+                 +..++ |+||....+
T Consensus         5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~-~v~Q~~~l~   83 (363)
T TIGR01186         5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIG-MVFQQFALF   83 (363)
T ss_pred             CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEE-EEECCCcCC
Confidence            45699999999999999999999999999999999        33321                 22456 999987433


Q ss_pred             c------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297          77 S------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF  131 (185)
Q Consensus        77 ~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~  131 (185)
                      +                        .+.++++.+++++..++++.+||+|||||++|||++ .+|+++||||||+++|+.
T Consensus        84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~  163 (363)
T TIGR01186        84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL  163 (363)
T ss_pred             CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            2                        134567888998889999999999999999999999 999999999998888887


Q ss_pred             ChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         132 DGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       132 d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ....+.+.+ ..+.++.+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       164 ~r~~l~~~l-~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~e  216 (363)
T TIGR01186       164 IRDSMQDEL-KKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDE  216 (363)
T ss_pred             HHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence            777776655 56655458999999999 77899999999999999998887654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.8e-40  Score=277.15  Aligned_cols=173  Identities=20%  Similarity=0.174  Sum_probs=138.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~   65 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+           ...+
T Consensus         3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i   77 (369)
T PRK11000          3 SVTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV   77 (369)
T ss_pred             EEEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCE
Confidence            46777776554     235799999999999999999999999999999999        44332           2235


Q ss_pred             CceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + |+||++..+   +                     .+.++++.+++.+..++++.+||+|||||++|||++ .+|+++|
T Consensus        78 ~-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL  156 (369)
T PRK11000         78 G-MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL  156 (369)
T ss_pred             E-EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            5 999986332   2                     134566778888888999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||++|+|+.....+...+ +.+.++.+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus       157 LDEPts~LD~~~~~~l~~~L-~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~  220 (369)
T PRK11000        157 LDEPLSNLDAALRVQMRIEI-SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE  220 (369)
T ss_pred             EeCCcccCCHHHHHHHHHHH-HHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99997776665555555544 56655358999999999 78889999999999999998887654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=8.6e-40  Score=275.98  Aligned_cols=173  Identities=14%  Similarity=0.120  Sum_probs=140.6

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH----------HHH-----------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV----------SVF-----------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~----------i~~-----------~~   63 (185)
                      .++++++.+.|     +.+.+++|+||++++|++++|+||||||||||||+|+.          |.+           ..
T Consensus         5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r   79 (362)
T TIGR03258         5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR   79 (362)
T ss_pred             EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHC
Confidence            46777777655     23579999999999999999999999999999999921          111           22


Q ss_pred             hhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297          64 QIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSL  118 (185)
Q Consensus        64 ~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l  118 (185)
                      .++ |+||++..++                        .++++++.+++++..++++.+||+|||||++|||++ .+|++
T Consensus        80 ~ig-~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l  158 (362)
T TIGR03258        80 GLA-LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV  158 (362)
T ss_pred             CEE-EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            355 9999874332                        244567888999999999999999999999999999 99999


Q ss_pred             EEEeCCCCCCCcCChhHHHHHHHHHHHhcC-CCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         119 VIIDELGRGTSTFDGFGMACSIARELASNR-QPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~-~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|||||++|+|......+...+ ..+.++. |.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       159 lLLDEP~s~LD~~~r~~l~~~l-~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~  225 (362)
T TIGR03258       159 LLLDEPLSALDANIRANMREEI-AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA  225 (362)
T ss_pred             EEEcCccccCCHHHHHHHHHHH-HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999997777666655555544 6666544 7999999999 88899999999999999999988754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-39  Score=254.86  Aligned_cols=174  Identities=15%  Similarity=0.157  Sum_probs=141.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQ   64 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~   64 (185)
                      .++++++...|     ++..++.+|||++++||+++|+||||+|||||||+|        |.|.+            +.+
T Consensus         3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r   77 (237)
T COG0410           3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR   77 (237)
T ss_pred             ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence            45666665444     446799999999999999999999999999999999        44433            122


Q ss_pred             hC-ceecCCCCCc---ch--------------------hhHHHhhcC-cccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297          65 IG-CFVPCDSATI---SV--------------------VDQIFTRVG-AADSQYRGISTFMMEMKETATVIKKC-TENSL  118 (185)
Q Consensus        65 ~g-~~v~~~~~~~---~~--------------------~~~~l~~~~-l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l  118 (185)
                      .| +||||....|   ++                    .+.+++.|. +.+..+++.++|||||||+++||||| .+|++
T Consensus        78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl  157 (237)
T COG0410          78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL  157 (237)
T ss_pred             CCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence            22 3999987433   33                    334455554 45667889999999999999999999 99999


Q ss_pred             EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||||+.|++|.-...+.+.+ +.++++.+.||+++.++ ..+.+++||.++|.+|+++.+|+.++
T Consensus       158 LLLDEPs~GLaP~iv~~I~~~i-~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~e  223 (237)
T COG0410         158 LLLDEPSEGLAPKIVEEIFEAI-KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE  223 (237)
T ss_pred             EEecCCccCcCHHHHHHHHHHH-HHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHH
Confidence            9999999999998878777765 88886568899999999 88889999999999999999998765

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-39  Score=275.92  Aligned_cols=173  Identities=14%  Similarity=0.089  Sum_probs=139.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~   65 (185)
                      .++++++...+     ++..+++|+||++++|++++|+||||||||||||+|        |.|.+           ...+
T Consensus        19 ~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i   93 (377)
T PRK11607         19 LLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI   93 (377)
T ss_pred             eEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence            45666665544     235799999999999999999999999999999999        43322           2345


Q ss_pred             CceecCCCCCcc---h---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATIS---V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~~---~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      | |+||++..++   +                     +.++++.+++.+..++++.+||+|||||++|||++ .+|+++|
T Consensus        94 g-~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL  172 (377)
T PRK11607         94 N-MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL  172 (377)
T ss_pred             E-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            6 9999874333   1                     34566778888889999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||++++|......+...+ ..+.++.+.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus       173 LDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~  236 (377)
T PRK11607        173 LDEPMGALDKKLRDRMQLEV-VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE  236 (377)
T ss_pred             EeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence            99997776666655555544 44444468999999999 78899999999999999999988654

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-39  Score=260.87  Aligned_cols=173  Identities=18%  Similarity=0.149  Sum_probs=136.1

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhC
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIG   66 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g   66 (185)
                      .+.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+        ...++
T Consensus        10 ~~~l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~   84 (257)
T PRK11247         10 GTPLLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR   84 (257)
T ss_pred             CCcEEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence            3456666665544     235799999999999999999999999999999999        43322        22345


Q ss_pred             ceecCCCCCc---c---------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Q psy5297          67 CFVPCDSATI---S---------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG  127 (185)
Q Consensus        67 ~~v~~~~~~~---~---------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g  127 (185)
                       |+||++..+   +               .+.++++.+++.+..++++++||+|||||++||+++ .+|+++||||||+|
T Consensus        85 -~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~  163 (257)
T PRK11247         85 -LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA  163 (257)
T ss_pred             -EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence             888876322   2               134567778888888999999999999999999999 99999999999777


Q ss_pred             CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297         128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      +|+.....+.+.+ ..+.++.+.|||++||+ .++..+||++++|++|+++..++.
T Consensus       164 LD~~~~~~l~~~L-~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~  218 (257)
T PRK11247        164 LDALTRIEMQDLI-ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV  218 (257)
T ss_pred             CCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence            6666655555544 55544358999999999 777889999999999999887754

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=1.3e-39  Score=260.78  Aligned_cols=173  Identities=17%  Similarity=0.162  Sum_probs=135.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------Hhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------AQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------~~~   65 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+.           ..+
T Consensus         2 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i   76 (239)
T cd03296           2 SIEVRNVSKRF-----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV   76 (239)
T ss_pred             EEEEEeEEEEE-----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce
Confidence            36667766544     235799999999999999999999999999999999        433321           234


Q ss_pred             CceecCCCCCc---ch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          66 GCFVPCDSATI---SV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        66 g~~v~~~~~~~---~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      + |+||++..+   ++                         +.++++.+++.+..++++.+||+||+||++||+++ .+|
T Consensus        77 ~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p  155 (239)
T cd03296          77 G-FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP  155 (239)
T ss_pred             E-EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            4 888875221   11                         23446677887778899999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+|+|+.....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       156 ~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  223 (239)
T cd03296         156 KVLLLDEPFGALDAKVRKELRRWL-RRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE  223 (239)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence            999999997777666655555544 56654348999999999 77889999999999999998877653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=1.6e-39  Score=268.63  Aligned_cols=170  Identities=16%  Similarity=0.237  Sum_probs=137.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~   65 (185)
                      +++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.            +...+
T Consensus         3 l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~i   77 (301)
T TIGR03522         3 IRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI   77 (301)
T ss_pred             EEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhce
Confidence            5666666544     236799999999999999999999999999999999        4332            23345


Q ss_pred             CceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + |+||.+..+   +                     .++++++.+++.+..+++++.||+|||||+++|+++ .+|+++|
T Consensus        78 g-~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli  156 (301)
T TIGR03522        78 G-YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI  156 (301)
T ss_pred             E-EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            6 999986322   2                     134556778888888999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||++|+|+.....+...+ +.+++  +.|||++||+ .++.++||++++|++|++.+.++.++
T Consensus       157 LDEPt~gLD~~~~~~l~~~l-~~~~~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~  218 (301)
T TIGR03522       157 LDEPTTGLDPNQLVEIRNVI-KNIGK--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDE  218 (301)
T ss_pred             EcCCcccCCHHHHHHHHHHH-HHhcC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99997777766655555543 56643  6899999999 78999999999999999998887654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=2.3e-39  Score=258.10  Aligned_cols=176  Identities=15%  Similarity=0.148  Sum_probs=135.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------   61 (185)
                      ++++++...|-.. .+...+++++||++++|++++|+||||||||||+|+|        |.|.+                
T Consensus         2 i~~~~l~~~~~~~-~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           2 IELKNVSKVFGDT-GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             eEEecceEEccCC-CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            4556665443110 0012799999999999999999999999999999999        43311                


Q ss_pred             HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ...++ |+||++..+   ++                     +.++++.+++.+..++++.+||+||+||++||+++ .+|
T Consensus        81 ~~~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (233)
T cd03258          81 RRRIG-MIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP  159 (233)
T ss_pred             HhheE-EEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            23455 999886322   21                     23456777888888899999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++|||||++|+|+.....+.+.+ ..++++.+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       160 ~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (233)
T cd03258         160 KVLLCDEATSALDPETTQSILALL-RDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE  227 (233)
T ss_pred             CEEEecCCCCcCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            999999997777666655555544 55554348999999999 77788999999999999998887543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=2e-39  Score=276.68  Aligned_cols=172  Identities=16%  Similarity=0.182  Sum_probs=139.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~   63 (185)
                      .++++++...|     +++.+++|+||++++|++++|+||||||||||||+|        |.|.+             ..
T Consensus         3 ~L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~   77 (402)
T PRK09536          3 MIDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR   77 (402)
T ss_pred             eEEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhc
Confidence            56777776544     236799999999999999999999999999999999        33322             23


Q ss_pred             hhCceecCCCCC---cc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ |+||++..   ++                         .++++++.+++.+..++++.+||+|||||+.|||++ +
T Consensus        78 ~ig-~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~  156 (402)
T PRK09536         78 RVA-SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ  156 (402)
T ss_pred             ceE-EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence            355 88887521   11                         234567788888888999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+|+|+.....+.+. ++.+++ .+.|||++||+ .++.++|||+++|++|+++..+++++
T Consensus       157 ~P~iLLLDEPtsgLD~~~~~~l~~l-L~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~e  225 (402)
T PRK09536        157 ATPVLLLDEPTASLDINHQVRTLEL-VRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPAD  225 (402)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHH-HHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            9999999999777666665555554 467765 58999999999 88889999999999999999988764

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-39  Score=257.15  Aligned_cols=177  Identities=17%  Similarity=0.136  Sum_probs=136.0

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |+++.++++++...|-.. .....+++++||++++|++++|+||||||||||+|+|        |.|.+           
T Consensus         1 ~~~~~l~~~~l~~~~~~~-~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~   79 (233)
T PRK11629          1 MNKILLQCDNLCKRYQEG-SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA   79 (233)
T ss_pred             CCCceEEEEeEEEEcCCC-CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH
Confidence            788888888887544210 0114699999999999999999999999999999999        32211           


Q ss_pred             -----H-HhhCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297          62 -----L-AQIGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        62 -----~-~~~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                           . ..++ |+||++..+   +                     .+.++++.+++.+..++.+.+||+|||||++||+
T Consensus        80 ~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~  158 (233)
T PRK11629         80 AKAELRNQKLG-FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR  158 (233)
T ss_pred             HHHHHHhccEE-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence                 1 2355 999986222   2                     1335567788888888999999999999999999


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      ++ .+|+++||||||+|+|+.....+.+.+ +.++++.|.|||++||+ .++.. ++++++|++|+++..+.
T Consensus       159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        159 ALVNNPRLVLADEPTGNLDARNADSIFQLL-GELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence            99 999999999997777666655555544 56654358999999999 55555 57999999999988765

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=1.9e-39  Score=255.30  Aligned_cols=156  Identities=16%  Similarity=0.144  Sum_probs=125.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------HhhCceecCCCCCc---c---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------AQIGCFVPCDSATI---S---   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------~~~g~~v~~~~~~~---~---   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+.           ..++ |+||++..+   +   
T Consensus        13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~   91 (213)
T cd03301          13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA-MVFQNYALYPHMTVYD   91 (213)
T ss_pred             eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE-EEecChhhccCCCHHH
Confidence            5799999999999999999999999999999999        433321           1244 888876221   2   


Q ss_pred             ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                                        .+.++++.+++.+..++++.+||+|||||+++|+++ .+|+++|||||++|+|+.....+.+
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~  171 (213)
T cd03301          92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA  171 (213)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                              123456778888888999999999999999999999 9999999999977766655554544


Q ss_pred             HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297         139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      .+ +.++++.+.|||++||+ .++..+||++++|++|++++.|
T Consensus       172 ~l-~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         172 EL-KRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HH-HHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            43 55554358999999999 7788999999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=1.4e-38  Score=257.35  Aligned_cols=176  Identities=14%  Similarity=0.101  Sum_probs=139.6

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------   60 (185)
                      |+++.++++++...|     +++.+++|+||++++|++++|+||||||||||+++|        |.+.            
T Consensus         1 ~~~~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~   75 (257)
T PRK10619          1 MSENKLNVIDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDK   75 (257)
T ss_pred             CCCccEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccc
Confidence            677889999987655     236799999999999999999999999999999999        3221            


Q ss_pred             --------------HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCccccc-ccCcCccH
Q psy5297          61 --------------FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQ-YRGISTFM  100 (185)
Q Consensus        61 --------------~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~-~~~~~~lS  100 (185)
                                    +...++ |+||++..+   ++                      +.++++.+++.+.. ++++.+||
T Consensus        76 ~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS  154 (257)
T PRK10619         76 DGQLKVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS  154 (257)
T ss_pred             ccccccccchHHHHHhhceE-EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence                          122345 999886322   21                      23456677777654 78899999


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      +||+||++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|+|++||+ .++..+||++++|++|+++.
T Consensus       155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  232 (257)
T PRK10619        155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM-QQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE  232 (257)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            9999999999999 999999999997777666655555543 66665 58999999999 77788999999999999998


Q ss_pred             EeccCC
Q psy5297         179 YLYHTN  184 (185)
Q Consensus       179 ~~~~~~  184 (185)
                      .+++++
T Consensus       233 ~~~~~~  238 (257)
T PRK10619        233 EGAPEQ  238 (257)
T ss_pred             eCCHHH
Confidence            876543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=2.3e-39  Score=257.93  Aligned_cols=159  Identities=15%  Similarity=0.154  Sum_probs=128.8

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCc---c
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATI---S   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~---~   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+              ...++ |+||++..+   +
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t   91 (232)
T cd03218          13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG-YLPQEASIFRKLT   91 (232)
T ss_pred             EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE-EecCCccccccCc
Confidence            5799999999999999999999999999999999        43321              11244 888876222   2


Q ss_pred             ---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhH
Q psy5297          78 ---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFG  135 (185)
Q Consensus        78 ---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~  135 (185)
                                           .++++++.+++.+..++.+.+||+|||||++||+++ .+|+++||||||+|+|+.....
T Consensus        92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~  171 (232)
T cd03218          92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD  171 (232)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence                                 123556777888888999999999999999999999 9999999999977776666555


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         136 MACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       136 ~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.+.+ +.+.+ .+.|+|++||+ .++.++||++++|++|++...++.++
T Consensus       172 ~~~~l-~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  219 (232)
T cd03218         172 IQKII-KILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE  219 (232)
T ss_pred             HHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence            55544 66665 58999999999 78999999999999999998876543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=3.8e-39  Score=245.03  Aligned_cols=168  Identities=19%  Similarity=0.188  Sum_probs=137.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH----------------HH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS----------------VF   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i----------------~~   61 (185)
                      +++++++..|..   + +.+|+|+||++++||++-|+||+|||||||||+|        |.|                .+
T Consensus         2 I~f~~V~k~Y~~---g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~L   77 (223)
T COG2884           2 IRFENVSKAYPG---G-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL   77 (223)
T ss_pred             eeehhhhhhcCC---C-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchh
Confidence            455566555533   3 6799999999999999999999999999999999        443                23


Q ss_pred             HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      +.++| +|||+...++                        .+.++++.+|+.+..+..|.+||||||||++||||+ .+|
T Consensus        78 RR~IG-vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P  156 (223)
T COG2884          78 RRQIG-VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQP  156 (223)
T ss_pred             hheee-eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence            56788 9999874332                        356678999999999999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      ++||.|||   |..+|+....+.+  ++.+++ .|.||+++||| ..+..+-.|++.+++|+++.....
T Consensus       157 ~vLlADEP---TGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         157 AVLLADEP---TGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             CeEeecCC---CCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence            99999999   5556655444332  577777 79999999999 667778899999999999876543

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.8e-39  Score=268.19  Aligned_cols=176  Identities=16%  Similarity=0.151  Sum_probs=137.2

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------   61 (185)
                      ++++++...|-. .++.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+                
T Consensus         2 i~i~~l~~~y~~-~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          2 IELKNISKVFPQ-GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             EEEEeEEEEeCC-CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            456666554421 01135799999999999999999999999999999999        33221                


Q ss_pred             HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      +.+++ |+||++..+   ++                     +.++++.+++.+..++++++||+|||||++||+++ .+|
T Consensus        81 ~~~ig-~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p  159 (343)
T PRK11153         81 RRQIG-MIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             hcCEE-EEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            23456 999986322   21                     23456778888888999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+|+|+.....+.+.+ ..++++.|.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       160 ~iLlLDEPts~LD~~~~~~l~~~L-~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~  227 (343)
T PRK11153        160 KVLLCDEATSALDPATTRSILELL-KDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE  227 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999997777666655555544 66655358999999999 77888999999999999998876543

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.6e-38  Score=250.67  Aligned_cols=165  Identities=18%  Similarity=0.189  Sum_probs=128.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~   61 (185)
                      ++++++...|   .++.+.+++|+||++++|++++|+||||||||||+|+|        |.|.                +
T Consensus         2 l~~~~l~~~~---~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (216)
T TIGR00960         2 IRFEQVSKAY---PGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL   78 (216)
T ss_pred             eEEEEEEEEe---cCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHH
Confidence            4556665433   22224699999999999999999999999999999999        3221                1


Q ss_pred             HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ..+++ |+||++..+   ++                     +.++++.+++.+..++++.+||+|||||++||+++ .+|
T Consensus        79 ~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p  157 (216)
T TIGR00960        79 RRHIG-MVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKP  157 (216)
T ss_pred             HHhce-EEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            23455 999986322   21                     23456778888888999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      +++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++..+||++++|++|++
T Consensus       158 ~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       158 PLLLADEPTGNLDPELSRDIMRLF-EEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999997777666655555544 56655 58999999999 777889999999999874

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-39  Score=267.71  Aligned_cols=177  Identities=13%  Similarity=0.083  Sum_probs=138.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------   61 (185)
                      .+++++++..|-........+++|+||++++|++++|+||||||||||+|+|        |.+.+               
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            4677777765522111123599999999999999999999999999999999        43221               


Q ss_pred             ----------------------HHhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcc-cccc
Q psy5297          62 ----------------------LAQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAA-DSQY   93 (185)
Q Consensus        62 ----------------------~~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~-~~~~   93 (185)
                                            ...+| |+||++.  .+  +                     .+.++++.+++. +..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~  160 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVG-VVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ  160 (305)
T ss_pred             ccccccccccccccccchHHHHHhceE-EEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence                                  22345 9999741  11  1                     245567788886 6789


Q ss_pred             cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297          94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTF  171 (185)
Q Consensus        94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l  171 (185)
                      +++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++|||+++|
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l-~~l~~-~g~tiiivtHd~~~~~~~adrv~vl  238 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIF-DNLNK-QGKTIILVTHDLDNVLEWTKRTIFF  238 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeeCHHHHHHhCCEEEEE
Confidence            99999999999999999999 999999999997777666555554543 66665 59999999999 7788999999999


Q ss_pred             eeeeEEEEeccCC
Q psy5297         172 RNVHESKYLYHTN  184 (185)
Q Consensus       172 ~~g~i~~~~~~~~  184 (185)
                      ++|++++.+++++
T Consensus       239 ~~G~i~~~g~~~~  251 (305)
T PRK13651        239 KDGKIIKDGDTYD  251 (305)
T ss_pred             ECCEEEEECCHHH
Confidence            9999999887654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-39  Score=263.73  Aligned_cols=178  Identities=15%  Similarity=0.076  Sum_probs=137.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------   61 (185)
                      .++++++...|-...+..+.+|+|+||++++|++++|+||||||||||+|+|        |.|.+               
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            3677777665521111124699999999999999999999999999999999        43311               


Q ss_pred             --HHhhCceecCCCC--C--cc---------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC
Q psy5297          62 --LAQIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        62 --~~~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                        ...++ |+||++.  .  .+                     .++++++.+++. +..++++.+||+|||||++||+++
T Consensus        82 ~~~~~ig-~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL  160 (290)
T PRK13634         82 PLRKKVG-IVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL  160 (290)
T ss_pred             HHHhhEE-EEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence              22355 9999751  1  11                     234566778886 567899999999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .+|+++|||||++|+|+.....+... +..++++.|.|||++||+ .++.++|||+++|++|++++.+++++
T Consensus       161 ~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~  232 (290)
T PRK13634        161 AMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE  232 (290)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence             99999999999777766665555454 466655358999999999 77889999999999999998887543

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-38  Score=254.67  Aligned_cols=176  Identities=14%  Similarity=0.126  Sum_probs=136.9

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------   60 (185)
                      |+.+.+++++++..|     +.+.+++++||++++|++++|+||||||||||+|+|        |.+.            
T Consensus         1 ~~~~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~   75 (237)
T PRK11614          1 MEKVMLSFDKVSAHY-----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA   75 (237)
T ss_pred             CCccEEEEEeEEEee-----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHH
Confidence            666778888887654     235799999999999999999999999999999999        3321            


Q ss_pred             --HHHhhCceecCCCCCc---chh-------------------hHHHhhc-CcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          61 --FLAQIGCFVPCDSATI---SVV-------------------DQIFTRV-GAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        61 --~~~~~g~~v~~~~~~~---~~~-------------------~~~l~~~-~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                        ....++ |+||++..+   ++.                   ..+++.+ ++.+..++++.+||+||+||++||+++ .
T Consensus        76 ~~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~  154 (237)
T PRK11614         76 KIMREAVA-IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS  154 (237)
T ss_pred             HHHHhCEE-EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence              122345 888876322   221                   2233444 355566788999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+|+|+.....+.+.+ ..+++ .+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       155 ~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  223 (237)
T PRK11614        155 QPRLLLLDEPSLGLAPIIIQQIFDTI-EQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA  223 (237)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHH
Confidence            99999999997777665555554544 56665 58999999999 77899999999999999998887654

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=5.3e-39  Score=252.03  Aligned_cols=154  Identities=21%  Similarity=0.256  Sum_probs=125.7

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S---   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~---   77 (185)
                      +++++|+||++++|++++|+||||||||||+|+|        |.|.+           ...++ |+||++..+   +   
T Consensus        13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e   91 (208)
T cd03268          13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG-ALIEAPGFYPNLTARE   91 (208)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE-EecCCCccCccCcHHH
Confidence            5799999999999999999999999999999999        32211           23455 899876322   2   


Q ss_pred             --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297          78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR  142 (185)
Q Consensus        78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~  142 (185)
                                    .+.++++.+++.+..++++.+||+|||||+++|+++ .+|+++||||||+|+|+.....+...+ .
T Consensus        92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~  170 (208)
T cd03268          92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI-L  170 (208)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH-H
Confidence                          134456778888888999999999999999999999 999999999997777766655555543 5


Q ss_pred             HHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         143 ELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      .+++ .+.|+|++||+ .++..+||++++|++|+++..
T Consensus       171 ~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~  207 (208)
T cd03268         171 SLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEE  207 (208)
T ss_pred             HHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence            6655 58999999999 777889999999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=9.7e-39  Score=257.01  Aligned_cols=172  Identities=13%  Similarity=0.108  Sum_probs=134.6

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------   60 (185)
                      .+++++++..|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.                
T Consensus         3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   77 (250)
T PRK11264          3 AIEVKNLVKKF-----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK   77 (250)
T ss_pred             cEEEeceEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchh
Confidence            46677776544     235799999999999999999999999999999999        3321                


Q ss_pred             -----HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                           +...++ |+||++..+   ++                      +.++++.+++.+..++++++||+||+||++||
T Consensus        78 ~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la  156 (250)
T PRK11264         78 GLIRQLRQHVG-FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA  156 (250)
T ss_pred             hHHHHhhhhEE-EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence                 122345 899876222   21                      23345667887778899999999999999999


Q ss_pred             HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         111 KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       111 ~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++ .+|+++||||||+|+|+.....+.+. ++.+.+ .+.++|++||+ .++.++||++++|++|+++..+++++
T Consensus       157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  230 (250)
T PRK11264        157 RALAMRPEVILFDEPTSALDPELVGEVLNT-IRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA  230 (250)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            999 99999999999777766655555554 366665 58999999999 77888999999999999998876543

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=2.1e-38  Score=258.02  Aligned_cols=174  Identities=17%  Similarity=0.121  Sum_probs=135.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------   61 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------   61 (185)
                      +.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+              
T Consensus         6 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   80 (269)
T PRK11831          6 NLVDMRGVSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY   80 (269)
T ss_pred             ceEEEeCeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHH
Confidence            346666665433     236799999999999999999999999999999999        43321              


Q ss_pred             --HHhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 --LAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 --~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                        ...++ |+||+...+   ++                      +.++++.+++.+..++++++||+|||||++||+++ 
T Consensus        81 ~~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~  159 (269)
T PRK11831         81 TVRKRMS-MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA  159 (269)
T ss_pred             HHhhcEE-EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence              12345 888876222   21                      12345677888778999999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++||||||+|+|+.....+.+.+ ..++++.|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       160 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (269)
T PRK11831        160 LEPDLIMFDEPFVGQDPITMGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA  230 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence            999999999997777666555555544 56654348999999999 88889999999999999998876543

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=6.8e-39  Score=251.77  Aligned_cols=154  Identities=22%  Similarity=0.300  Sum_probs=124.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------HHhhCceecCCCCCc---ch----
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------LAQIGCFVPCDSATI---SV----   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------~~~~g~~v~~~~~~~---~~----   78 (185)
                      +.+++|+||++++|++++|+||||||||||+++|        |.|.+         ...++ |+||++..+   ++    
T Consensus        13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l   91 (210)
T cd03269          13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIG-YLPEERGLYPKMKVIDQL   91 (210)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEE-EeccCCcCCcCCcHHHHH
Confidence            5799999999999999999999999999999999        33322         23455 888876222   21    


Q ss_pred             -----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297          79 -----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI  140 (185)
Q Consensus        79 -----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i  140 (185)
                                       +.++++.+++.+..++++.+||+|||||+++|+++ .+|+++|||||++|+|+.....+.+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l  171 (210)
T cd03269          92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI  171 (210)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence                             23456677887778899999999999999999999 999999999997777666655555543


Q ss_pred             HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         141 ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       141 l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                       +.+++ .+.|||++||+ .++.++||++++|++|++...
T Consensus       172 -~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         172 -RELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             -HHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence             56655 48899999999 777889999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-38  Score=255.66  Aligned_cols=177  Identities=16%  Similarity=0.150  Sum_probs=138.1

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |++..++++++...+     +.+.+++++||++++|++++|+||||||||||+|+|        |.|.+           
T Consensus         1 ~~~~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~   75 (255)
T PRK11300          1 MSQPLLSVSGLMMRF-----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH   75 (255)
T ss_pred             CCCceEEEeeEEEEE-----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHH
Confidence            666678888887644     236799999999999999999999999999999999        43321           


Q ss_pred             --HH-hhCceecCCCCCc---ch------------------------------------hhHHHhhcCcccccccCcCcc
Q psy5297          62 --LA-QIGCFVPCDSATI---SV------------------------------------VDQIFTRVGAADSQYRGISTF   99 (185)
Q Consensus        62 --~~-~~g~~v~~~~~~~---~~------------------------------------~~~~l~~~~l~~~~~~~~~~l   99 (185)
                        .. .++ |+||++..+   ++                                    +.++++.+++.+..++++.+|
T Consensus        76 ~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L  154 (255)
T PRK11300         76 QIARMGVV-RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL  154 (255)
T ss_pred             HHHhcCeE-EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence              11 133 778875211   11                                    223355678877889999999


Q ss_pred             HHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297         100 MMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       100 S~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~  177 (185)
                      |+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..++++.+.|||++||+ .++.++||++++|++|+++
T Consensus       155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L-~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~  233 (255)
T PRK11300        155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI-AELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL  233 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH-HHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence            99999999999999 999999999997776666655555544 56655348999999999 7788999999999999999


Q ss_pred             EEeccCC
Q psy5297         178 KYLYHTN  184 (185)
Q Consensus       178 ~~~~~~~  184 (185)
                      ..+++++
T Consensus       234 ~~~~~~~  240 (255)
T PRK11300        234 ANGTPEE  240 (255)
T ss_pred             ecCCHHH
Confidence            8877543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-38  Score=259.79  Aligned_cols=178  Identities=15%  Similarity=0.141  Sum_probs=142.1

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------   60 (185)
                      |.+..++++++...|-    +++.+++|+||++++||+++|+||||||||||+|+|        |.+.            
T Consensus         1 ~~~~~l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~   76 (283)
T PRK13636          1 MEDYILKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG   76 (283)
T ss_pred             CCCceEEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcch
Confidence            6777888888876552    135699999999999999999999999999999999        3221            


Q ss_pred             ---HHHhhCceecCCCC----Ccc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          61 ---FLAQIGCFVPCDSA----TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        61 ---~~~~~g~~v~~~~~----~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                         +...++ |+||++.    ..+                     .++++++.+++.+..++++.+||+||+||++||++
T Consensus        77 ~~~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara  155 (283)
T PRK13636         77 LMKLRESVG-MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV  155 (283)
T ss_pred             HHHHHhhEE-EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence               223456 9999751    111                     13455677888888899999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      + .+|+++|||||++|+|+.....+.+.+ ..+.++.|.|||++||+ .++..+||++++|++|++++.+++++
T Consensus       156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~  228 (283)
T PRK13636        156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE  228 (283)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9 999999999997776666555555544 56655348999999999 77778999999999999999887654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.8e-39  Score=262.16  Aligned_cols=177  Identities=12%  Similarity=0.131  Sum_probs=137.7

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-----------------   60 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-----------------   60 (185)
                      +++++++..|-......+.+++|+||++++|++++|+||||||||||+|+|        |.|.                 
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            667777655521111124699999999999999999999999999999999        4321                 


Q ss_pred             HHHhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-
Q psy5297          61 FLAQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        61 ~~~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      ++..++ |+||++.  .+  +                     .+.++++.+|+. +..++++.+||+||+||++||+++ 
T Consensus        83 ~~~~ig-~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~  161 (286)
T PRK13646         83 VRKRIG-MVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA  161 (286)
T ss_pred             HHhheE-EEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            233456 9999751  11  1                     134566778886 677899999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++|||||++|+|+.....+...+ ..++++.|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       162 ~~p~illlDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~  232 (286)
T PRK13646        162 MNPDIIVLDEPTAGLDPQSKRQVMRLL-KSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE  232 (286)
T ss_pred             hCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999999997777776655555544 66654358999999999 77788999999999999998887643

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=8e-39  Score=256.37  Aligned_cols=173  Identities=15%  Similarity=0.152  Sum_probs=133.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~   61 (185)
                      ++++++...|-    +++.+++|+||++++|++++|+||||||||||+|+|        |.|.                +
T Consensus         2 l~~~~l~~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T TIGR02315         2 LEVENLSKVYP----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL   77 (243)
T ss_pred             eEEEeeeeecC----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHH
Confidence            45566654441    135699999999999999999999999999999999        3221                1


Q ss_pred             HHhhCceecCCCCCc---ch-----------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297          62 LAQIGCFVPCDSATI---SV-----------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~---~~-----------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i  109 (185)
                      ..+++ |+||++..+   ++                             +.++++.+++.+..++++.+||+||+||++|
T Consensus        78 ~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  156 (243)
T TIGR02315        78 RRRIG-MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAI  156 (243)
T ss_pred             HhheE-EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence            23455 888875211   11                             2334566778777889999999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++ .+|+++||||||+|+|+.....+.+.+ +.+.++.+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  232 (243)
T TIGR02315       157 ARALAQQPDLILADEPIASLDPKTSKQVMDYL-KRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE  232 (243)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHH
Confidence            9999 999999999997777766655555544 55554358999999999 77788999999999999998877653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=1.9e-38  Score=253.84  Aligned_cols=160  Identities=16%  Similarity=0.167  Sum_probs=127.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------HHHhhCceecCCCCC---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------FLAQIGCFVPCDSAT---   75 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~~~~~g~~v~~~~~~---   75 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.                +...++ |+||+...   
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~   92 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIG-MIFQQFNLIER   92 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccE-EEcccCccccc
Confidence            5799999999999999999999999999999999        3321                122345 88887521   


Q ss_pred             cch-----------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          76 ISV-----------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        76 ~~~-----------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      .++                             +.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||
T Consensus        93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  172 (241)
T cd03256          93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV  172 (241)
T ss_pred             CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            121                             22345667777778899999999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+|+.....+.+.+ ..++++.|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       173 ~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  231 (241)
T cd03256         173 ASLDPASSRQVMDLL-KRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE  231 (241)
T ss_pred             ccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence            777766655555544 56654358999999999 77788999999999999998876643

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=3.5e-38  Score=250.45  Aligned_cols=159  Identities=14%  Similarity=0.151  Sum_probs=126.5

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-----HH----------------------HHhhCceecCCCC
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-----VF----------------------LAQIGCFVPCDSA   74 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-----~~----------------------~~~~g~~v~~~~~   74 (185)
                      +.+++|+||++++|++++|+||||||||||+|+| |..     ..                      ..+++ |+||++.
T Consensus        13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~   91 (227)
T cd03260          13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG-MVFQKPN   91 (227)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEE-EEecCch
Confidence            5799999999999999999999999999999999 443     11                      12344 8888752


Q ss_pred             Cc--ch----------------------hhHHHhhcCcccccccC--cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Q psy5297          75 TI--SV----------------------VDQIFTRVGAADSQYRG--ISTFMMEMKETATVIKKC-TENSLVIIDELGRG  127 (185)
Q Consensus        75 ~~--~~----------------------~~~~l~~~~l~~~~~~~--~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g  127 (185)
                      .+  ++                      +.++++.+++.+..+++  +.+||+|||||++||+++ .+|+++||||||+|
T Consensus        92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  171 (227)
T cd03260          92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA  171 (227)
T ss_pred             hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            21  11                      23455667777666666  599999999999999999 99999999999777


Q ss_pred             CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      +|+.....+.+.+ ..+++ . .|||++||+ .++.++||++++|++|+++..++++++
T Consensus       172 LD~~~~~~l~~~l-~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         172 LDPISTAKIEELI-AELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             CCHHHHHHHHHHH-HHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            6666555555443 56655 3 899999999 778889999999999999999988765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=6.4e-39  Score=268.01  Aligned_cols=180  Identities=17%  Similarity=0.103  Sum_probs=139.2

Q ss_pred             CceEEEcccCCceeeecC--------CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----
Q psy5297           3 TGTLVLNQCRHPIVELQG--------GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~--------~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----   61 (185)
                      ++.++++|++..|-...+        +...+++|+||++++||+++|+|+||||||||+|+|        |.|.+     
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i   85 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL   85 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence            467888888776632111        125699999999999999999999999999999999        43321     


Q ss_pred             -----------HHhhCceecCCCC--C---cch-----------------------hhHHHhhcCcc-cccccCcCccHH
Q psy5297          62 -----------LAQIGCFVPCDSA--T---ISV-----------------------VDQIFTRVGAA-DSQYRGISTFMM  101 (185)
Q Consensus        62 -----------~~~~g~~v~~~~~--~---~~~-----------------------~~~~l~~~~l~-~~~~~~~~~lS~  101 (185)
                                 ..+++ |+||++.  .   +++                       +.++++.+++. +..++++.+|||
T Consensus        86 ~~~~~~~~~~~r~~i~-~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg  164 (331)
T PRK15079         86 LGMKDDEWRAVRSDIQ-MIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG  164 (331)
T ss_pred             CcCCHHHHHHHhCceE-EEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence                       23455 9999861  1   121                       23446667774 467899999999


Q ss_pred             HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      ||+||++||+++ .+|+++|+||||+|+|......+.+.+ ..++++.+.|+|++||| ..+.++||++++|++|++++.
T Consensus       165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL-~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~  243 (331)
T PRK15079        165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL-QQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL  243 (331)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999 999999999996666665555555544 66665458999999999 777789999999999999998


Q ss_pred             eccCC
Q psy5297         180 LYHTN  184 (185)
Q Consensus       180 ~~~~~  184 (185)
                      +++++
T Consensus       244 g~~~~  248 (331)
T PRK15079        244 GTYDE  248 (331)
T ss_pred             cCHHH
Confidence            87643

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=6e-39  Score=253.26  Aligned_cols=151  Identities=19%  Similarity=0.212  Sum_probs=120.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI-   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~-   76 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+                 ..+++ |+||++..+ 
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~   95 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIG-FVFQSFNLLP   95 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEE-EEeeccccCC
Confidence            5799999999999999999999999999999999        33211                 12355 888875221 


Q ss_pred             --c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          77 --S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        77 --~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                        +                     .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+..
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  175 (218)
T cd03255          96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET  175 (218)
T ss_pred             CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence              1                     134566778888888999999999999999999999 9999999999977777666


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      ...+.+.+ ..++++.+.|||++||+ .++. +||++++|++|++
T Consensus       176 ~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         176 GKEVMELL-RELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHH-HHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            55555544 55554348999999999 5655 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=2.4e-38  Score=250.13  Aligned_cols=158  Identities=16%  Similarity=0.148  Sum_probs=127.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCc---c--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATI---S--   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~---~--   77 (185)
                      +++++|+||++++|++++|+||||||||||+|+|        |.|.            +..+++ |+||++..+   +  
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~   93 (220)
T cd03263          15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG-YCPQFDALFDELTVR   93 (220)
T ss_pred             ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEE-EecCcCCccccCCHH
Confidence            5799999999999999999999999999999999        4332            123455 888876322   1  


Q ss_pred             -------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297          78 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA  137 (185)
Q Consensus        78 -------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~  137 (185)
                                         .+.++++.+++.+..++++.+||+||+||++||+++ .+|+++|||||++|+|+.....+.
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~  173 (220)
T cd03263          94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW  173 (220)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence                               133556778888888899999999999999999999 999999999996666665544444


Q ss_pred             HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +. ++.+++  +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       174 ~~-l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  218 (220)
T cd03263         174 DL-ILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE  218 (220)
T ss_pred             HH-HHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence            43 355554  5899999999 77778999999999999998887765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=6.4e-39  Score=255.92  Aligned_cols=159  Identities=21%  Similarity=0.210  Sum_probs=127.5

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCc---c
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATI---S   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~---~   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+              ...++ |+||++..+   +
T Consensus        13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~t   91 (236)
T cd03219          13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG-RTFQIPRLFPELT   91 (236)
T ss_pred             EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE-EEecccccccCCC
Confidence            5699999999999999999999999999999999        43321              11244 888875211   1


Q ss_pred             -------------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          78 -------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        78 -------------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                                                     .+.++++.+++.+..++++++||+||+||+++|+++ .+|+++||||||
T Consensus        92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  171 (236)
T cd03219          92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA  171 (236)
T ss_pred             HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                                           123456677888788999999999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+|+.....+.+. +..+++ .+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus       172 ~~LD~~~~~~l~~~-l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  229 (236)
T cd03219         172 AGLNPEETEELAEL-IRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE  229 (236)
T ss_pred             ccCCHHHHHHHHHH-HHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHH
Confidence            77666555555453 366665 58999999999 77889999999999999998877653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=100.00  E-value=1.2e-37  Score=247.28  Aligned_cols=174  Identities=59%  Similarity=0.975  Sum_probs=155.9

Q ss_pred             EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcC
Q psy5297           8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG   87 (185)
Q Consensus         8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~   87 (185)
                      +++++||+++.....+++++|++++..++++++|+||||+|||||+|+||.+.++++.|+|+|+....++.+++++++++
T Consensus         2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~   81 (222)
T cd03285           2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG   81 (222)
T ss_pred             ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec
Confidence            67899999997555678999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             cccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcc
Q psy5297          88 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRV  167 (185)
Q Consensus        88 l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~  167 (185)
                      +.+...+..++++.+++++..+++++.+|+++|||||++||+++|+..+.+.+++.+.++.+.++|++||+.++.++||+
T Consensus        82 l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~  161 (222)
T cd03285          82 ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE  161 (222)
T ss_pred             cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhc
Confidence            98887777777777777777777777899999999999999999999998877788775458999999999889999999


Q ss_pred             ccceeeeeEEEEec
Q psy5297         168 IPTFRNVHESKYLY  181 (185)
Q Consensus       168 ~~~l~~g~i~~~~~  181 (185)
                      +..+++|++....+
T Consensus       162 ~~~i~~g~~~~~~~  175 (222)
T cd03285         162 VPNVKNLHVTALTD  175 (222)
T ss_pred             CCCeEEEEEEEEEe
Confidence            99999999987664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-39  Score=273.96  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=131.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI-   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~-   76 (185)
                      ..+++|+||++++|++++|+||||||||||+|+|        |.|.+                 ..+++ |+||+...+ 
T Consensus        41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ig-yv~Q~~~l~~  119 (400)
T PRK10070         41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA-MVFQSFALMP  119 (400)
T ss_pred             eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEE-EEECCCcCCC
Confidence            4589999999999999999999999999999999        43322                 12355 999986332 


Q ss_pred             --c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          77 --S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        77 --~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                        +                     .+.++++.+++.+..++++++||+|||||++|||++ .+|+++||||||+|+|+..
T Consensus       120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~  199 (400)
T PRK10070        120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI  199 (400)
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence              2                     133467778898889999999999999999999999 9999999999988877777


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ...+.+.+ ..+.++.+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       200 r~~l~~~L-~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~  251 (400)
T PRK10070        200 RTEMQDEL-VKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDE  251 (400)
T ss_pred             HHHHHHHH-HHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHH
Confidence            66666654 55554358999999999 78889999999999999998876543

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-38  Score=257.48  Aligned_cols=172  Identities=14%  Similarity=0.081  Sum_probs=137.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~   63 (185)
                      .++++++...|-    +...+++|+||++++|++++|+||||||||||+++|        |.|.+             ..
T Consensus         4 ~l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   79 (274)
T PRK13647          4 IIEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS   79 (274)
T ss_pred             eEEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHh
Confidence            577777765441    124699999999999999999999999999999999        43321             23


Q ss_pred             hhCceecCCCC--C--cc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          64 QIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        64 ~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      .++ |+||++.  .  .+                     .+.++++.+++.+..++++.+||+||+||++||+++ .+|+
T Consensus        80 ~i~-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~  158 (274)
T PRK13647         80 KVG-LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD  158 (274)
T ss_pred             hEE-EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            456 9999751  1  11                     134556778888888999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++|||||++|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||++++|++|++++.++++
T Consensus       159 llllDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~  223 (274)
T PRK13647        159 VIVLDEPMAYLDPRGQETLMEIL-DRLHN-QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS  223 (274)
T ss_pred             EEEEECCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            99999997777776656555544 66665 48999999999 6777899999999999999888754

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=6e-39  Score=261.30  Aligned_cols=161  Identities=19%  Similarity=0.177  Sum_probs=129.5

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCC
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSAT   75 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~   75 (185)
                      +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+                 ..+++ |+||++..
T Consensus        35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~~  113 (269)
T cd03294          35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS-MVFQSFAL  113 (269)
T ss_pred             CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE-EEecCccc
Confidence            345699999999999999999999999999999999        33321                 12345 89987632


Q ss_pred             c---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297          76 I---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST  130 (185)
Q Consensus        76 ~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~  130 (185)
                      +   ++                     +.++++.+++.+..++.+.+||+|||||++||+++ .+|+++||||||+|+|+
T Consensus       114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~  193 (269)
T cd03294         114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP  193 (269)
T ss_pred             CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence            2   21                     23456778888888999999999999999999999 99999999999777776


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      .....+.+.+ ..+.++.|.|+|++||+ .++.++||++++|++|++...++++
T Consensus       194 ~~~~~l~~~l-~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~  246 (269)
T cd03294         194 LIRREMQDEL-LRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPE  246 (269)
T ss_pred             HHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            6655555544 55554358999999999 7788999999999999999887654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.2e-38  Score=248.16  Aligned_cols=152  Identities=20%  Similarity=0.174  Sum_probs=124.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------HHhhCceecCCCC----Ccc---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------LAQIGCFVPCDSA----TIS---   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------~~~~g~~v~~~~~----~~~---   77 (185)
                      +.+++|+||++++|++++|+||||||||||||+|        |.|.+          ...++ |+||++.    ..+   
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~~tv~e   91 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG-YVMQDVDYQLFTDSVRE   91 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceE-EEecChhhhhhhccHHH
Confidence            5799999999999999999999999999999999        43322          22455 9998851    112   


Q ss_pred             --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297          78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR  142 (185)
Q Consensus        78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~  142 (185)
                                    .+.++++.+++.+..++++.+||+|||||+++||++ .+|+++|||||++|+|+.....+.+.+ .
T Consensus        92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~  170 (205)
T cd03226          92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI-R  170 (205)
T ss_pred             HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH-H
Confidence                          234567888888888999999999999999999999 999999999997777766655555543 6


Q ss_pred             HHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297         143 ELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~  177 (185)
                      .+++ .+.|+|++||+ .++..+||++++|++|+++
T Consensus       171 ~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         171 ELAA-QGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            6655 58999999999 7788899999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=9e-39  Score=256.28  Aligned_cols=159  Identities=18%  Similarity=0.200  Sum_probs=127.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCc---ch
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATI---SV   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~---~~   78 (185)
                      +.+++++||++++|++++|+||||||||||+|+|        |.|.+             ...++ |+||++..+   ++
T Consensus        14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv   92 (242)
T cd03295          14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG-YVIQQIGLFPHMTV   92 (242)
T ss_pred             ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE-EEccCccccCCCcH
Confidence            5699999999999999999999999999999999        43322             22345 899876222   21


Q ss_pred             ---------------------hhHHHhhcCccc--ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297          79 ---------------------VDQIFTRVGAAD--SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGF  134 (185)
Q Consensus        79 ---------------------~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~  134 (185)
                                           +.++++.+++.+  ..++++.+||+||+||++||+++ .+|+++||||||+|+|+....
T Consensus        93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  172 (242)
T cd03295          93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD  172 (242)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence                                 234567778875  67899999999999999999999 999999999997776665555


Q ss_pred             HHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         135 GMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       135 ~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      .+.+.+ ..++++.|.+||++||+ .++.++||++++|++|+++..++++
T Consensus       173 ~l~~~L-~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  221 (242)
T cd03295         173 QLQEEF-KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD  221 (242)
T ss_pred             HHHHHH-HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            444433 55554348999999999 7788999999999999998877654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-38  Score=261.13  Aligned_cols=177  Identities=20%  Similarity=0.177  Sum_probs=140.0

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |.++.++++++...|-   +..+++++|+||++++|++++|+||||||||||+|+|        |.|.+           
T Consensus         1 ~~~~~l~~~~l~~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~   77 (279)
T PRK13635          1 MKEEIIRVEHISFRYP---DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVW   77 (279)
T ss_pred             CCCceEEEEEEEEEeC---CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHH
Confidence            5566788888876551   1235699999999999999999999999999999999        43321           


Q ss_pred             --HHhhCceecCCCC--C--cch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 --LAQIGCFVPCDSA--T--ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 --~~~~g~~v~~~~~--~--~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                        ...++ |+||++.  .  .++                     +.++++.+++.+..++++.+||+||+||++||+++ 
T Consensus        78 ~~~~~i~-~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~  156 (279)
T PRK13635         78 DVRRQVG-MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA  156 (279)
T ss_pred             HHhhheE-EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              23455 9998751  1  121                     34566778888889999999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      .+|+++|||||++|+|+.....+.+.+ ..++++.+.|||++||+ .++. .||++++|++|++++.++++
T Consensus       157 ~~p~lllLDEPt~gLD~~~~~~l~~~l-~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~  225 (279)
T PRK13635        157 LQPDIIILDEATSMLDPRGRREVLETV-RQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPE  225 (279)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHH
Confidence            999999999997777776666555544 66665358999999999 5554 69999999999999888754

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=9.2e-39  Score=252.72  Aligned_cols=159  Identities=18%  Similarity=0.163  Sum_probs=126.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCc---c
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATI---S   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~---~   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+              ...++ |+||++..+   +
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t   91 (222)
T cd03224          13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG-YVPEGRRIFPELT   91 (222)
T ss_pred             eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE-EeccccccCCCCc
Confidence            5799999999999999999999999999999999        43321              12345 899886322   2


Q ss_pred             h-------------------hhHHHhhc-CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297          78 V-------------------VDQIFTRV-GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM  136 (185)
Q Consensus        78 ~-------------------~~~~l~~~-~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~  136 (185)
                      +                   +..+++.+ ++.+..++++.+||+||+||++||+++ .+|+++|||||++|+|+.....+
T Consensus        92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  171 (222)
T cd03224          92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI  171 (222)
T ss_pred             HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence            1                   12344555 456667889999999999999999999 99999999999777776665555


Q ss_pred             HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+.+ ..+++ .+.|+|++||+ .++..+||++++|++|++...++.++
T Consensus       172 ~~~l-~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (222)
T cd03224         172 FEAI-RELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE  218 (222)
T ss_pred             HHHH-HHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence            5544 56655 58999999999 77889999999999999988876543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=4.1e-38  Score=248.51  Aligned_cols=153  Identities=20%  Similarity=0.314  Sum_probs=125.5

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCCCCc---c---
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDSATI---S---   77 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~~~~---~---   77 (185)
                      .+++|+||++++|++++|+||||||||||+|+|        |.|.+            ..+++ |+||++..+   +   
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e   97 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG-FVSDSTGLYDRLTARE   97 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE-EecCCcccCcCCCHHH
Confidence            799999999999999999999999999999999        33321            23455 889876222   2   


Q ss_pred             ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                                        .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++|||||++|+|+.....+.+
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  177 (218)
T cd03266          98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE  177 (218)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence                              134467778888888999999999999999999999 9999999999977776666555555


Q ss_pred             HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      .+ ..+++ .+.|+|++||+ .++..+||++++|++|++...
T Consensus       178 ~l-~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~  217 (218)
T cd03266         178 FI-RQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE  217 (218)
T ss_pred             HH-HHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence            44 56655 58999999999 778899999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=1.1e-38  Score=254.86  Aligned_cols=170  Identities=21%  Similarity=0.271  Sum_probs=132.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~   65 (185)
                      ++++++...+     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+            ...+
T Consensus         2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i   76 (236)
T TIGR03864         2 LEVAGLSFAY-----GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARL   76 (236)
T ss_pred             EEEEeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhE
Confidence            4555555433     235799999999999999999999999999999999        33321            1234


Q ss_pred             CceecCCCCC---cch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSAT---ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~---~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + |+||++..   .++                     +.++++.+++.+..++++.+||+||+||++||+++ .+|+++|
T Consensus        77 ~-~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  155 (236)
T TIGR03864        77 G-VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLL  155 (236)
T ss_pred             E-EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            5 88887622   121                     23456777888778999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ||||++|+|+.....+.+.+ ..++++.+.|+|++||+ .++. .||++++|++|+++..++++
T Consensus       156 lDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~~~~~~  217 (236)
T TIGR03864       156 LDEPTVGLDPASRAAIVAHV-RALCRDQGLSVLWATHLVDEIE-ADDRLVVLHRGRVLADGAAA  217 (236)
T ss_pred             EcCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecChhhHh-hCCEEEEEeCCeEEEeCCHH
Confidence            99997777776666555544 55654358999999999 5665 59999999999998887654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=5.4e-38  Score=251.36  Aligned_cols=170  Identities=14%  Similarity=0.138  Sum_probs=133.2

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------L   62 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~   62 (185)
                      ++++++...+     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+               .
T Consensus         2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   76 (240)
T PRK09493          2 IEFKNVSKHF-----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR   76 (240)
T ss_pred             EEEEeEEEEE-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHh
Confidence            4455554433     235799999999999999999999999999999999        32211               2


Q ss_pred             HhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          63 AQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        63 ~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ..++ |+||++..+   ++                      +.++++.+++++..++++++||+||+||++||+++ .+|
T Consensus        77 ~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p  155 (240)
T PRK09493         77 QEAG-MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP  155 (240)
T ss_pred             hceE-EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCC
Confidence            2345 888875221   11                      23456777888778999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +++||||||+|+|+.....+.+. +..+++ .+.|+|++||+ .++..+||++++|++|+++..++++
T Consensus       156 ~llllDEP~~~LD~~~~~~l~~~-l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  221 (240)
T PRK09493        156 KLMLFDEPTSALDPELRHEVLKV-MQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQ  221 (240)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHH-HHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHH
Confidence            99999999777776665555554 356665 58999999999 7788899999999999999887654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=254.77  Aligned_cols=172  Identities=15%  Similarity=0.148  Sum_probs=134.3

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~   63 (185)
                      .++++++...+     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+             ..
T Consensus         3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   77 (241)
T PRK14250          3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR   77 (241)
T ss_pred             eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhh
Confidence            36677766443     235799999999999999999999999999999999        43321             22


Q ss_pred             hhCceecCCCCCcc-------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEe
Q psy5297          64 QIGCFVPCDSATIS-------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIID  122 (185)
Q Consensus        64 ~~g~~v~~~~~~~~-------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllD  122 (185)
                      .++ |+||++..++                   .+.++++.+++. +..++++.+||+||+||++||+++ .+|+++|||
T Consensus        78 ~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  156 (241)
T PRK14250         78 KIG-MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD  156 (241)
T ss_pred             cEE-EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            345 8898862221                   234567778886 567899999999999999999999 999999999


Q ss_pred             CCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       123 EP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ||++|+|+.....+...+ ..++++.|.|||++||+ .++.++||++++|++|+++..++++
T Consensus       157 EPt~~LD~~~~~~l~~~l-~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  217 (241)
T PRK14250        157 EPTSALDPTSTEIIEELI-VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTY  217 (241)
T ss_pred             CCcccCCHHHHHHHHHHH-HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence            997776665544444433 55554348999999999 7788899999999999998877654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.9e-39  Score=271.22  Aligned_cols=162  Identities=15%  Similarity=0.150  Sum_probs=134.7

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH---------------------HhhCceecC
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL---------------------AQIGCFVPC   71 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~---------------------~~~g~~v~~   71 (185)
                      +...+++|+||++++|++++|+||||||||||+|+|        |.|.+.                     .+++ |+||
T Consensus        35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~-~vfQ  113 (382)
T TIGR03415        35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS-MVFQ  113 (382)
T ss_pred             CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE-EEEC
Confidence            445699999999999999999999999999999999        432221                     1345 9999


Q ss_pred             CCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297          72 DSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus        72 ~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~  126 (185)
                      +...++                        .+.++++.+++.+..++++.+||+|||||++|||++ .+|+++||||||+
T Consensus       114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts  193 (382)
T TIGR03415       114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS  193 (382)
T ss_pred             CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            874332                        134567788888889999999999999999999999 9999999999988


Q ss_pred             CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++|+.....+...+ ..+.++.+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       194 ~LD~~~r~~l~~~L-~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~e  251 (382)
T TIGR03415       194 ALDPLIRTQLQDEL-LELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEE  251 (382)
T ss_pred             cCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            88887777776655 55555458999999999 77889999999999999999887654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-38  Score=255.09  Aligned_cols=175  Identities=13%  Similarity=0.137  Sum_probs=135.3

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------   61 (185)
                      ++.++++++...+     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+             
T Consensus         9 ~~~l~i~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~   83 (265)
T PRK10575          9 DTTFALRNVSFRV-----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF   83 (265)
T ss_pred             CceEEEeeEEEEE-----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence            3456777766544     235799999999999999999999999999999999        33221             


Q ss_pred             HHhhCceecCCCCC---cc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          62 LAQIGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        62 ~~~~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      ...++ |+||+...   ++                         .+.++++.+++.+..++++.+||+||+||++||+++
T Consensus        84 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral  162 (265)
T PRK10575         84 ARKVA-YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV  162 (265)
T ss_pred             hhheE-EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence            22345 88886411   11                         123456677887778899999999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .+|+++||||||+|+|+.....+.+.+ ..++++.+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l-~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~  234 (265)
T PRK10575        163 AQDSRCLLLDEPTSALDIAHQVDVLALV-HRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE  234 (265)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence             999999999997776665555555544 56654348999999999 77889999999999999988876543

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-38  Score=262.48  Aligned_cols=179  Identities=13%  Similarity=0.074  Sum_probs=138.1

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------   60 (185)
                      ++.+++++++..|-........+++|+||++++|++++|+||||||||||+|+|        |.|.              
T Consensus        19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence            455777777655421111124699999999999999999999999999999999        3221              


Q ss_pred             ---------------HHHhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcc-cccccCcCcc
Q psy5297          61 ---------------FLAQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAA-DSQYRGISTF   99 (185)
Q Consensus        61 ---------------~~~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~-~~~~~~~~~l   99 (185)
                                     ++..++ |+||++.  .+  +                     .+.++++.+++. +..++.+.+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L  177 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVS-MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL  177 (320)
T ss_pred             ccccccccccchHHHHHhcEE-EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence                           123355 9999751  11  1                     134456778886 5788999999


Q ss_pred             HHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297         100 MMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       100 S~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~  177 (185)
                      |+|||||++|||++ .+|+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++.++||++++|++|+++
T Consensus       178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L-~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~  255 (320)
T PRK13631        178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI-LDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKIL  255 (320)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH-HHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            99999999999999 999999999997777666655555544 56655 58999999999 6678999999999999999


Q ss_pred             EEeccCC
Q psy5297         178 KYLYHTN  184 (185)
Q Consensus       178 ~~~~~~~  184 (185)
                      ..+++++
T Consensus       256 ~~g~~~~  262 (320)
T PRK13631        256 KTGTPYE  262 (320)
T ss_pred             EeCCHHH
Confidence            9987653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=2.6e-38  Score=248.95  Aligned_cols=163  Identities=17%  Similarity=0.180  Sum_probs=127.8

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~   61 (185)
                      ++++++...+-    +++.+++|+||++++|++++|+||||||||||+|+|        |.|.                +
T Consensus         2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (214)
T TIGR02673         2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL   77 (214)
T ss_pred             EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            45666654431    125799999999999999999999999999999999        4331                1


Q ss_pred             HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ...++ |+||++..+   ++                     +.++++.+++.+..++.+.+||+||+||++||+++ .+|
T Consensus        78 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p  156 (214)
T TIGR02673        78 RRRIG-VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSP  156 (214)
T ss_pred             HhheE-EEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence            23455 899876322   21                     23456777888778899999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      +++||||||+|+|+.....+.+.+ +.+++ .+.|+|++||+ .++..+||++++|++|+
T Consensus       157 ~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       157 PLLLADEPTGNLDPDLSERILDLL-KRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHH-HHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            999999997777766655555544 55655 58999999999 78888999999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-38  Score=253.75  Aligned_cols=171  Identities=16%  Similarity=0.115  Sum_probs=133.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------   61 (185)
                      ++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+                
T Consensus         3 l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (242)
T PRK11124          3 IQLNGINCFY-----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI   77 (242)
T ss_pred             EEEEeeEEEE-----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhH
Confidence            5667765544     235799999999999999999999999999999999        43221                


Q ss_pred             ---HHhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          62 ---LAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        62 ---~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                         ..+++ |+||.+..+   ++                      +.++++.+++.+..++.+.+||+||+||++||+++
T Consensus        78 ~~~~~~i~-~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral  156 (242)
T PRK11124         78 RELRRNVG-MVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARAL  156 (242)
T ss_pred             HHHHhheE-EEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence               22455 899876222   21                      23345667887778999999999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .+|+++|||||++|+|+.....+.+. ++.+++ .+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       157 ~~~p~llilDEPt~~LD~~~~~~l~~~-l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~  227 (242)
T PRK11124        157 MMEPQVLLFDEPTAALDPEITAQIVSI-IRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             hcCCCEEEEcCCCCcCCHHHHHHHHHH-HHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence             99999999999766666554444443 366655 58999999999 77788999999999999998876543

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.6e-38  Score=258.47  Aligned_cols=176  Identities=13%  Similarity=0.107  Sum_probs=135.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-----------------   60 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-----------------   60 (185)
                      ++++++...|-......+.+++|+||++++|++++|+||||||||||+|+|        |.|.                 
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            566676655521111113599999999999999999999999999999999        3221                 


Q ss_pred             HHHhhCceecCCC--CCc--c---------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-
Q psy5297          61 FLAQIGCFVPCDS--ATI--S---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        61 ~~~~~g~~v~~~~--~~~--~---------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      +...++ |+||++  ..+  +                     .+.++++.+++. +..++++.+||+|||||++||+++ 
T Consensus        82 ~~~~ig-~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~  160 (288)
T PRK13643         82 VRKKVG-VVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA  160 (288)
T ss_pred             HHhhEE-EEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence            123456 999975  111  1                     134456777885 567899999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++|||||++|+|+.....+.+. ++.+++ .|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       161 ~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~  230 (288)
T PRK13643        161 MEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD  230 (288)
T ss_pred             hCCCEEEEECCccCCCHHHHHHHHHH-HHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999777766555555443 466665 58999999999 77788999999999999999887654

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-38  Score=257.72  Aligned_cols=170  Identities=16%  Similarity=0.150  Sum_probs=133.2

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------L   62 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~   62 (185)
                      +++++++..|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+               .
T Consensus         2 l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   76 (271)
T PRK13638          2 LATSDLWFRY-----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR   76 (271)
T ss_pred             eEEEEEEEEc-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHH
Confidence            4566665444     235699999999999999999999999999999999        43311               2


Q ss_pred             HhhCceecCCCC--Cc--ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          63 AQIGCFVPCDSA--TI--SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        63 ~~~g~~v~~~~~--~~--~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ..++ |+||++.  .+  ++                     +.++++.+++.+..++++.+||+|||||++||+++ .+|
T Consensus        77 ~~i~-~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p  155 (271)
T PRK13638         77 QQVA-TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQA  155 (271)
T ss_pred             hheE-EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCC
Confidence            3455 9998752  11  11                     22456667887778899999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++..+||++++|++|+++..++++
T Consensus       156 ~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  221 (271)
T PRK13638        156 RYLLLDEPTAGLDPAGRTQMIAII-RRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG  221 (271)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999999997776666555555543 56665 48999999999 7778899999999999999888754

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-38  Score=250.23  Aligned_cols=172  Identities=15%  Similarity=0.140  Sum_probs=135.3

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------H
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------L   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~   62 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.+.+              .
T Consensus         3 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   77 (241)
T PRK10895          3 TLTAKNLAKAY-----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR   77 (241)
T ss_pred             eEEEeCcEEEe-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence            46677776544     235799999999999999999999999999999999        43321              2


Q ss_pred             HhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          63 AQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        63 ~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ..++ |+||++..+   ++                      ++++++.+++.+..++++.+||+||+||++||+++ .+|
T Consensus        78 ~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  156 (241)
T PRK10895         78 RGIG-YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP  156 (241)
T ss_pred             hCeE-EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence            2345 888876211   21                      33456667777777889999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+|+|+.....+.+. +..+++ .|.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus       157 ~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  223 (241)
T PRK10895        157 KFILLDEPFAGVDPISVIDIKRI-IEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTE  223 (241)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHH-HHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHH
Confidence            99999999777766655555454 466665 58999999999 78899999999999999998877643

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-38  Score=255.75  Aligned_cols=169  Identities=18%  Similarity=0.196  Sum_probs=131.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------HhhCcee
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------AQIGCFV   69 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------~~~g~~v   69 (185)
                      +++++++..|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+.        ..++ |+
T Consensus         2 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-~v   75 (255)
T PRK11248          2 LQISHLYADY-----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERG-VV   75 (255)
T ss_pred             EEEEEEEEEe-----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEE-EE
Confidence            4566665433     235799999999999999999999999999999999        444332        1234 88


Q ss_pred             cCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297          70 PCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDEL  124 (185)
Q Consensus        70 ~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP  124 (185)
                      ||.+..+   ++                     +.++++.+++.+..++++.+||+|||||+++|+++ .+|+++|||||
T Consensus        76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP  155 (255)
T PRK11248         76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP  155 (255)
T ss_pred             eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            8875221   11                     33456777888778899999999999999999999 99999999999


Q ss_pred             CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee--eeeEEEEec
Q psy5297         125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR--NVHESKYLY  181 (185)
Q Consensus       125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~--~g~i~~~~~  181 (185)
                      |+|+|+.....+.+.+ ..+.++.|.|||++||+ .++..+||++++|+  +|+++..++
T Consensus       156 t~~LD~~~~~~l~~~L-~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~  214 (255)
T PRK11248        156 FGALDAFTREQMQTLL-LKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP  214 (255)
T ss_pred             CccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence            7776665555554543 55543258999999999 77889999999998  599988764

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-38  Score=256.74  Aligned_cols=174  Identities=16%  Similarity=0.161  Sum_probs=136.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------H
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------L   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~   62 (185)
                      ..++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+             .
T Consensus         6 ~~l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~   80 (265)
T PRK10253          6 ARLRGEQLTLGY-----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA   80 (265)
T ss_pred             cEEEEEEEEEEE-----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence            356667766544     235799999999999999999999999999999999        43321             2


Q ss_pred             HhhCceecCCCCCc---c-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          63 AQIGCFVPCDSATI---S-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        63 ~~~g~~v~~~~~~~---~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      ..++ |+||++..+   +                         .+.++++.+++.+..++++.+||+||+||++||+++ 
T Consensus        81 ~~i~-~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~  159 (265)
T PRK10253         81 RRIG-LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA  159 (265)
T ss_pred             hheE-EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence            2345 888875211   1                         123456677888788999999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++||||||+|+|+.....+.+.+ ..+.++.+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       160 ~~p~llllDEPt~gLD~~~~~~l~~~L-~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  230 (265)
T PRK10253        160 QETAIMLLDEPTTWLDISHQIDLLELL-SELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKE  230 (265)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999997777666655555544 56654348999999999 77889999999999999998877543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-38  Score=257.19  Aligned_cols=177  Identities=13%  Similarity=0.075  Sum_probs=135.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------   61 (185)
                      .++++++...|-......+.+++|+||++++|++++|+||||||||||+|+|        |.|.+               
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            3566666554421000024699999999999999999999999999999999        32211               


Q ss_pred             --HHhhCceecCCCC--C--cc---------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC
Q psy5297          62 --LAQIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        62 --~~~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                        ...++ |+||++.  .  .+                     .+.++++.+++. +..++++++||+|||||++||+++
T Consensus        82 ~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         82 KLRKKVS-LVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHhceE-EEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence              22345 9998751  1  12                     134456777886 678999999999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .+|+++||||||+|+|+.....+...+ ..+++ .|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l-~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  231 (287)
T PRK13641        161 AYEPEILCLDEPAAGLDPEGRKEMMQLF-KDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE  231 (287)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence             999999999997777776655555544 66665 58999999999 77889999999999999998887553

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.9e-38  Score=260.81  Aligned_cols=180  Identities=13%  Similarity=0.042  Sum_probs=139.7

Q ss_pred             CceEEEcccCCceeeecC-----CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------
Q psy5297           3 TGTLVLNQCRHPIVELQG-----GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~-----~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------   60 (185)
                      ++.++++|+...|-...+     +...+++||||++++|++++|+|+||||||||+++|        |.|.         
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~   82 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA   82 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence            457888888765532111     124699999999999999999999999999999999        3321         


Q ss_pred             -------HHHhhCceecCCCC--C---cc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHH
Q psy5297          61 -------FLAQIGCFVPCDSA--T---IS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKE  105 (185)
Q Consensus        61 -------~~~~~g~~v~~~~~--~---~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q  105 (185)
                             ++.+++ |+||++.  .   ++                      .+.++++.+++. +..++++.+||+||+|
T Consensus        83 ~~~~~~~~r~~i~-~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q  161 (327)
T PRK11308         83 DPEAQKLLRQKIQ-IVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ  161 (327)
T ss_pred             CHHHHHHHhCCEE-EEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence                   123455 9999862  1   11                      234567788886 4678999999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |++||+++ .+|++||+||||+++|......+.+.+ ..++++.|.|+|++||| ..+.++||++++|++|++++.++.+
T Consensus       162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL-~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~  240 (327)
T PRK11308        162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLM-MDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKE  240 (327)
T ss_pred             HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            99999999 999999999996666665555555544 56655468999999999 6777899999999999999988765


Q ss_pred             C
Q psy5297         184 N  184 (185)
Q Consensus       184 ~  184 (185)
                      +
T Consensus       241 ~  241 (327)
T PRK11308        241 Q  241 (327)
T ss_pred             H
Confidence            3

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=8.6e-38  Score=248.65  Aligned_cols=160  Identities=18%  Similarity=0.147  Sum_probs=126.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCc---c
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATI---S   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~---~   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+              ...++ |+||++..+   +
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t   91 (230)
T TIGR03410        13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA-YVPQGREIFPRLT   91 (230)
T ss_pred             eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE-EeccCCcccCCCc
Confidence            5799999999999999999999999999999999        33321              12345 899886322   2


Q ss_pred             h------------------hhHHHhhcC-cccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297          78 V------------------VDQIFTRVG-AADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA  137 (185)
Q Consensus        78 ~------------------~~~~l~~~~-l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~  137 (185)
                      +                  ...+++.++ +.+..++++.+||+||+||++||+++ .+|+++|||||++|+|+.....+.
T Consensus        92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~  171 (230)
T TIGR03410        92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG  171 (230)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence            1                  123344454 45567889999999999999999999 999999999997776666655555


Q ss_pred             HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.+ ..++++.+.|+|++||+ .++..+||+++++++|+++..++.++
T Consensus       172 ~~l-~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~  218 (230)
T TIGR03410       172 RVI-RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE  218 (230)
T ss_pred             HHH-HHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            544 55554348999999999 77888999999999999998887654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-38  Score=258.28  Aligned_cols=174  Identities=17%  Similarity=0.150  Sum_probs=137.5

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~   63 (185)
                      .++++++...|-    +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+             ..
T Consensus         3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   78 (277)
T PRK13652          3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK   78 (277)
T ss_pred             eEEEEEEEEEeC----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence            466677765442    124699999999999999999999999999999999        43321             23


Q ss_pred             hhCceecCCCC--C--cc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          64 QIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        64 ~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      .++ |+||++.  .  .+                     .++++++.+++.+..++.+.+||+|||||++||+++ .+|+
T Consensus        79 ~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~  157 (277)
T PRK13652         79 FVG-LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ  157 (277)
T ss_pred             heE-EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            455 9998751  1  12                     134556777888888999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++|||||++|+|+.....+.+.+ ..++++.+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       158 llilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~  224 (277)
T PRK13652        158 VLVLDEPTAGLDPQGVKELIDFL-NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE  224 (277)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHH
Confidence            99999997777766655555544 66655348999999999 77789999999999999999887654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=2.8e-38  Score=255.72  Aligned_cols=177  Identities=18%  Similarity=0.123  Sum_probs=136.2

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |..+.++++++...|-     .+.+++|+||++++|++++|+||||||||||+|+|        |.|.+           
T Consensus         2 ~~~~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~   76 (258)
T PRK11701          2 MDQPLLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY   76 (258)
T ss_pred             CCCceEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc
Confidence            4556778888775441     25799999999999999999999999999999999        32211           


Q ss_pred             -----------HHhhCceecCCCCC-----cc----------------------hhhHHHhhcCccc-ccccCcCccHHH
Q psy5297          62 -----------LAQIGCFVPCDSAT-----IS----------------------VVDQIFTRVGAAD-SQYRGISTFMME  102 (185)
Q Consensus        62 -----------~~~~g~~v~~~~~~-----~~----------------------~~~~~l~~~~l~~-~~~~~~~~lS~g  102 (185)
                                 ...++ |+||++..     .+                      .+.++++.+++.+ ..++++.+||+|
T Consensus        77 ~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G  155 (258)
T PRK11701         77 ALSEAERRRLLRTEWG-FVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGG  155 (258)
T ss_pred             cCCHHHHHHHhhcceE-EEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHH
Confidence                       11245 99987521     11                      1234566778863 678999999999


Q ss_pred             HHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297         103 MKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       103 ~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      |+||++|||++ .+|+++||||||+|+|+.....+.+.+ +.++++.|.|||++||+ .++..+||++++|++|+++..+
T Consensus       156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~  234 (258)
T PRK11701        156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL-RGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG  234 (258)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence            99999999999 999999999997666665544444433 55554358999999999 7777899999999999999888


Q ss_pred             ccCC
Q psy5297         181 YHTN  184 (185)
Q Consensus       181 ~~~~  184 (185)
                      ++++
T Consensus       235 ~~~~  238 (258)
T PRK11701        235 LTDQ  238 (258)
T ss_pred             CHHH
Confidence            7654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-38  Score=264.59  Aligned_cols=177  Identities=14%  Similarity=0.066  Sum_probs=136.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-----------HH-----------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-----------VF-----------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-----------~~-----------   61 (185)
                      .+++++++..|-. ..+...+++||||++++||+++|+|+||||||||+++| |.+           .+           
T Consensus         3 ~L~v~~l~~~~~~-~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~   81 (326)
T PRK11022          3 LLNVDKLSVHFGD-ESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK   81 (326)
T ss_pred             eEEEeCeEEEECC-CCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence            5788888765522 11124699999999999999999999999999999999 322           11           


Q ss_pred             --HH----hhCceecCCCCC-----cc----------------------hhhHHHhhcCccc---ccccCcCccHHHHHH
Q psy5297          62 --LA----QIGCFVPCDSAT-----IS----------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKE  105 (185)
Q Consensus        62 --~~----~~g~~v~~~~~~-----~~----------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~q  105 (185)
                        ..    .++ |+||++..     ++                      .+.++++.+++.+   ..++++.+||+||+|
T Consensus        82 ~~~~~r~~~i~-~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q  160 (326)
T PRK11022         82 ERRNLVGAEVA-MIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ  160 (326)
T ss_pred             HHHHHhCCCEE-EEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence              11    245 99998621     11                      1345667788863   468899999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |++||+++ .+|+++|+||||+++|......+.+.+ ..++++.|.|+|++||| ..+.++||++++|++|++++.++.+
T Consensus       161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL-~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~  239 (326)
T PRK11022        161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL-LELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAH  239 (326)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            99999999 999999999997776666655555544 66665468999999999 6777899999999999999988764


Q ss_pred             C
Q psy5297         184 N  184 (185)
Q Consensus       184 ~  184 (185)
                      +
T Consensus       240 ~  240 (326)
T PRK11022        240 D  240 (326)
T ss_pred             H
Confidence            3

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.6e-38  Score=255.76  Aligned_cols=175  Identities=20%  Similarity=0.214  Sum_probs=136.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~   63 (185)
                      .++++++...|-.  .+.+++++|+||++++|++++|+||||||||||+|+|        |.|.             +..
T Consensus         4 ~l~~~~l~~~~~~--~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (279)
T PRK13650          4 IIEVKNLTFKYKE--DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH   81 (279)
T ss_pred             eEEEEeEEEEcCC--CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHh
Confidence            4677777665521  1124699999999999999999999999999999999        3321             233


Q ss_pred             hhCceecCCCC--C--cc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          64 QIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        64 ~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      .++ |+||++.  .  .+                     .+.++++.+++.+..++++.+||+||+||++||+++ .+|+
T Consensus        82 ~i~-~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~  160 (279)
T PRK13650         82 KIG-MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK  160 (279)
T ss_pred             hce-EEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            456 9999751  1  12                     134567778888888999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||||||+|+|+.....+...+ ..++++.|.|||++||+ .++ ..||++++|++|+++..+++++
T Consensus       161 lLlLDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~  226 (279)
T PRK13650        161 IIILDEATSMLDPEGRLELIKTI-KGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRE  226 (279)
T ss_pred             EEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence            99999997777666555555544 66665358999999999 555 6899999999999998887653

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=4.1e-38  Score=248.97  Aligned_cols=169  Identities=17%  Similarity=0.143  Sum_probs=127.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------   61 (185)
                      ++++++...|-. ..+.+.+++++||++++|++++|+||||||||||+|+|        |.+.+                
T Consensus         2 l~~~~v~~~~~~-~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         2 LKCENLGKRYQE-GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             EEEEeeeEEccC-CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence            455665543311 00124699999999999999999999999999999999        33211                


Q ss_pred             H-HhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          62 L-AQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        62 ~-~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      . ..++ |+||++..+   ++                     +.++++.+++.+..++.+.+||+||+||++||+++ .+
T Consensus        81 ~~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  159 (221)
T TIGR02211        81 RNKKLG-FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ  159 (221)
T ss_pred             HHhcEE-EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence            1 2355 999886222   21                     23456777888888999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEE
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~  177 (185)
                      |+++||||||+|+|+.....+.+.+ ..++++.+.|+|++||+.+....||++++|++|+++
T Consensus       160 p~illlDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       160 PSLVLADEPTGNLDNNNAKIIFDLM-LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            9999999997777766655555544 566543589999999994344558999999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-38  Score=255.08  Aligned_cols=172  Identities=17%  Similarity=0.137  Sum_probs=134.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~   64 (185)
                      ++++++...|     +++.+++|+||++++|++++|+||||||||||+++|        |.|.+             ...
T Consensus         3 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (258)
T PRK13548          3 LEARNLSVRL-----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR   77 (258)
T ss_pred             EEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhh
Confidence            5566665444     236799999999999999999999999999999999        33321             123


Q ss_pred             hCceecCCCCC---cch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C-----
Q psy5297          65 IGCFVPCDSAT---ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T-----  114 (185)
Q Consensus        65 ~g~~v~~~~~~---~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~-----  114 (185)
                      ++ |+||++..   .++                     +.++++.+++.+..++.+.+||+|||||++||+++ .     
T Consensus        78 i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~  156 (258)
T PRK13548         78 RA-VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPD  156 (258)
T ss_pred             eE-EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence            45 88887522   121                     23456777888888999999999999999999999 5     


Q ss_pred             -CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 -ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 -~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       +|+++||||||+|+|+.....+...+ ..+.++.+.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       157 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (258)
T PRK13548        157 GPPRWLLLDEPTSALDLAHQHHVLRLA-RQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE  227 (258)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence             89999999997777766655555544 55552258999999999 77888999999999999988776543

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=9.8e-38  Score=253.03  Aligned_cols=175  Identities=16%  Similarity=0.141  Sum_probs=136.9

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------   60 (185)
                      ++.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+| |...                     
T Consensus         2 ~~~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~   76 (262)
T PRK09984          2 QTIIRVEKLAKTF-----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR   76 (262)
T ss_pred             CcEEEEeeEEEEe-----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence            3467777776554     236799999999999999999999999999999999 2210                     


Q ss_pred             -------HHHhhCceecCCCCCc---ch-----------------------------hhHHHhhcCcccccccCcCccHH
Q psy5297          61 -------FLAQIGCFVPCDSATI---SV-----------------------------VDQIFTRVGAADSQYRGISTFMM  101 (185)
Q Consensus        61 -------~~~~~g~~v~~~~~~~---~~-----------------------------~~~~l~~~~l~~~~~~~~~~lS~  101 (185)
                             +...++ |+||++..+   ++                             +.++++.+++.+..++.+.+||+
T Consensus        77 ~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~  155 (262)
T PRK09984         77 LARDIRKSRANTG-YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG  155 (262)
T ss_pred             cchhHHHHHhheE-EEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCH
Confidence                   012344 888875211   11                             23455667887778999999999


Q ss_pred             HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      |||||++|||++ .+|+++||||||+|+|......+.+.+ +.+.++.|.|||++||+ .++..+||++++|++|++...
T Consensus       156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~  234 (262)
T PRK09984        156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTL-RDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD  234 (262)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999 999999999997777666655555544 66654358999999999 678899999999999999988


Q ss_pred             eccCC
Q psy5297         180 LYHTN  184 (185)
Q Consensus       180 ~~~~~  184 (185)
                      +++++
T Consensus       235 g~~~~  239 (262)
T PRK09984        235 GSSQQ  239 (262)
T ss_pred             CCHHH
Confidence            87654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.2e-38  Score=254.49  Aligned_cols=159  Identities=18%  Similarity=0.130  Sum_probs=127.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------------------HHHhhCce
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------------------FLAQIGCF   68 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------------------~~~~~g~~   68 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.                          +...++ |
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~-~   91 (252)
T TIGR03005        13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG-M   91 (252)
T ss_pred             eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeE-E
Confidence            5799999999999999999999999999999999        3221                          122345 8


Q ss_pred             ecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEe
Q psy5297          69 VPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIID  122 (185)
Q Consensus        69 v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllD  122 (185)
                      +||++..+   ++                      +.++++.+++.+..++.+.+||+||+||++||+++ .+|+++|||
T Consensus        92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  171 (252)
T TIGR03005        92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD  171 (252)
T ss_pred             EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            88876322   11                      23456677887788899999999999999999999 999999999


Q ss_pred             CCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       123 EP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |||+|+|+.....+.+.+ +.+.++.+.|+|++||+ .++..+||++++|++|+++..++++
T Consensus       172 EP~~~LD~~~~~~l~~~l-~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~  232 (252)
T TIGR03005       172 EVTSALDPELVGEVLNVI-RRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD  232 (252)
T ss_pred             CCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            997777666555554544 55554348999999999 7778899999999999999887654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-38  Score=258.51  Aligned_cols=177  Identities=15%  Similarity=0.119  Sum_probs=137.9

Q ss_pred             eEEEcccCCceeeecC-CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------H
Q psy5297           5 TLVLNQCRHPIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------F   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~-~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~   61 (185)
                      .+++++++..|-.... +.+++++|+||++++|++++|+||||||||||+++|        |.|.              +
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            5777887765532111 135699999999999999999999999999999999        4321              1


Q ss_pred             HHhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          62 LAQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        62 ~~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ...++ |+||++.  .+  +                     .+.++++.+++.+..++++.+||+||+||++||+++ .+
T Consensus        84 ~~~i~-~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  162 (280)
T PRK13633         84 RNKAG-MVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR  162 (280)
T ss_pred             hhheE-EEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            23345 8998751  11  1                     134556778888888999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++|||||++|+|+.....+...+ ..++++.|.|||++||+ .++. .||++++|++|+++..+++++
T Consensus       163 p~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~  230 (280)
T PRK13633        163 PECIIFDEPTAMLDPSGRREVVNTI-KELNKKYGITIILITHYMEEAV-EADRIIVMDSGKVVMEGTPKE  230 (280)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecChHHHh-cCCEEEEEECCEEEEecCHHH
Confidence            9999999998877777766665544 66654358999999999 5555 499999999999999887654

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-37  Score=250.28  Aligned_cols=171  Identities=17%  Similarity=0.176  Sum_probs=133.9

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~   64 (185)
                      ++++++...|     +++.+++|+||++++|++++|+||||||||||+|+|        |.+.+             ...
T Consensus         3 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (255)
T PRK11231          3 LRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR   77 (255)
T ss_pred             EEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhh
Confidence            6677766544     236799999999999999999999999999999999        32211             223


Q ss_pred             hCceecCCCCCc---ch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATI---SV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~---~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||+...+   ++                         +.++++.+++.+..++++.+||+||+||++||+++ .+
T Consensus        78 i~-~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  156 (255)
T PRK11231         78 LA-LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD  156 (255)
T ss_pred             eE-EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcC
Confidence            45 888875211   11                         23445667777778999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+|+|+.....+.+.+ ..+++ .+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       157 p~llllDEP~~~LD~~~~~~l~~~l-~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  224 (255)
T PRK11231        157 TPVVLLDEPTTYLDINHQVELMRLM-RELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE  224 (255)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHH
Confidence            9999999997777666655555544 55655 48999999999 77889999999999999998876553

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-37  Score=250.38  Aligned_cols=173  Identities=14%  Similarity=0.139  Sum_probs=132.4

Q ss_pred             CCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH--------------------
Q psy5297           2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV--------------------   60 (185)
Q Consensus         2 ~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~--------------------   60 (185)
                      +.|.++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                    
T Consensus         3 ~~~~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~   77 (253)
T PRK14242          3 SPPKMEARGLSFFY-----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD   77 (253)
T ss_pred             CCcEEEEeeeEEEE-----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence            46778888887655     225699999999999999999999999999999999 4321                    


Q ss_pred             -------HHHhhCceecCCCCCc--chh----------------------hHHHhhcCccc----ccccCcCccHHHHHH
Q psy5297          61 -------FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAAD----SQYRGISTFMMEMKE  105 (185)
Q Consensus        61 -------~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~~----~~~~~~~~lS~g~~q  105 (185)
                             +...++ |+||++..+  ++.                      .++++.+++.+    ..++++.+||+||||
T Consensus        78 ~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q  156 (253)
T PRK14242         78 PHVDVVELRRRVG-MVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ  156 (253)
T ss_pred             cccCHHHHhhcEE-EEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence                   012345 888876322  221                      12334455532    357788999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|||++||+ .++.++||++++|++|+++..++++
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~  233 (253)
T PRK14242        157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELI-HELKA--RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE  233 (253)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc--CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999 999999999997777666655555544 55543  6899999999 7788999999999999999887654

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=4.4e-38  Score=249.33  Aligned_cols=158  Identities=19%  Similarity=0.223  Sum_probs=128.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH---------HhhCceecCCCCCc---c-----
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL---------AQIGCFVPCDSATI---S-----   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~---------~~~g~~v~~~~~~~---~-----   77 (185)
                      +.+++|+||++++|++++|+||||||||||+++|        |.+.+.         ..++ |+||++..+   +     
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~-~~~q~~~~~~~~t~~~~~   91 (223)
T TIGR03740        13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIG-SLIESPPLYENLTARENL   91 (223)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEE-EEcCCCCccccCCHHHHH
Confidence            5799999999999999999999999999999999        433221         2344 888875222   2     


Q ss_pred             ------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297          78 ------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAREL  144 (185)
Q Consensus        78 ------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l  144 (185)
                                  .+.++++.+++++..++++.+||+||+||+++|+++ .+|+++|||||++|+|+.....+.+.+ ..+
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L-~~~  170 (223)
T TIGR03740        92 KVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI-RSF  170 (223)
T ss_pred             HHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH-HHH
Confidence                        234556778888888999999999999999999999 999999999997777776655555544 566


Q ss_pred             HhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         145 ASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       145 ~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++ .+.++|++||+ .++.++||++++|++|++...+++.
T Consensus       171 ~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       171 PE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             HH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence            55 58899999999 7778899999999999999887654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=6e-38  Score=251.30  Aligned_cols=171  Identities=17%  Similarity=0.156  Sum_probs=132.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------H
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------L   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~   62 (185)
                      .++++++...+     +.+.+++|+||++++|++++|+||||||||||+|+|        |.+.+              .
T Consensus         2 ~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~   76 (242)
T TIGR03411         2 ILYLEGLSVSF-----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR   76 (242)
T ss_pred             eEEEEeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence            45666665544     235799999999999999999999999999999999        33221              1


Q ss_pred             HhhCceecCCCCCc---c-----------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          63 AQIGCFVPCDSATI---S-----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        63 ~~~g~~v~~~~~~~---~-----------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      ..++ |+||++..+   +                             .+.++++.+++.+..++++++||+||+||++||
T Consensus        77 ~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la  155 (242)
T TIGR03411        77 AGIG-RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG  155 (242)
T ss_pred             cCee-EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            1244 888875211   1                             123455677888788899999999999999999


Q ss_pred             HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         111 KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       111 ~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~  228 (242)
T TIGR03411       156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ  228 (242)
T ss_pred             HHHhcCCCEEEecCCccCCCHHHHHHHHHHH-HHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence            999 999999999997776666655555543 55554  6899999999 77888999999999999998876543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-37  Score=250.51  Aligned_cols=175  Identities=16%  Similarity=0.143  Sum_probs=133.8

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-------------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-------------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-------------------   60 (185)
                      |.++.++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                   
T Consensus         8 ~~~~~l~i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~   82 (259)
T PRK14274          8 MKQEVYQINGMNLWY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL   82 (259)
T ss_pred             cCCceEEEeeEEEEE-----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence            456677888877644     235799999999999999999999999999999999 4321                   


Q ss_pred             --------HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCcc----cccccCcCccHHHHH
Q psy5297          61 --------FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMK  104 (185)
Q Consensus        61 --------~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~  104 (185)
                              +...++ |+||++..+  ++                      ++++++.+++.    +..++++.+||+||+
T Consensus        83 ~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~  161 (259)
T PRK14274         83 KGKVDLVELRKNIG-MVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ  161 (259)
T ss_pred             ccccCHHHHhhceE-EEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence                    012244 888875221  11                      12234455653    245788899999999


Q ss_pred             HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297         105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      ||++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..+++
T Consensus       162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~  238 (259)
T PRK14274        162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI-LKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT  238 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999999 999999999997777766655555544 55543  6899999999 778899999999999999998876


Q ss_pred             CC
Q psy5297         183 TN  184 (185)
Q Consensus       183 ~~  184 (185)
                      ++
T Consensus       239 ~~  240 (259)
T PRK14274        239 NK  240 (259)
T ss_pred             HH
Confidence            53

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-38  Score=263.41  Aligned_cols=177  Identities=14%  Similarity=0.102  Sum_probs=136.3

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-----------HH-----------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-----------VF-----------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-----------~~-----------   61 (185)
                      .++++|+...|-. .++...+++|+||++++||+++|+|+||||||||+|+| |..           .+           
T Consensus         3 ~L~v~~l~~~y~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          3 LLDIRNLTIEFKT-SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             eEEEeeeEEEEeC-CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            6788888776532 12335799999999999999999999999999999999 321           11           


Q ss_pred             --H----HhhCceecCCCCC-----cc---------------------------hhhHHHhhcCccc---ccccCcCccH
Q psy5297          62 --L----AQIGCFVPCDSAT-----IS---------------------------VVDQIFTRVGAAD---SQYRGISTFM  100 (185)
Q Consensus        62 --~----~~~g~~v~~~~~~-----~~---------------------------~~~~~l~~~~l~~---~~~~~~~~lS  100 (185)
                        .    ..++ |+||++..     ++                           .+.++++.+++.+   ..++.+.+||
T Consensus        82 ~~~~~~~~~i~-~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS  160 (330)
T PRK15093         82 ERRKLVGHNVS-MIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT  160 (330)
T ss_pred             HHHHHhCCCEE-EEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence              0    1245 99998621     11                           1234466677764   3578899999


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      +||+||++||+++ .+|++||+||||+++|......+.+.+ ..+.++.|.|+|++||| ..+.++||++++|++|++++
T Consensus       161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL-~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive  239 (330)
T PRK15093        161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLL-TRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE  239 (330)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999 999999999997776665555555544 66665458999999999 77788999999999999999


Q ss_pred             EeccCC
Q psy5297         179 YLYHTN  184 (185)
Q Consensus       179 ~~~~~~  184 (185)
                      .++.++
T Consensus       240 ~g~~~~  245 (330)
T PRK15093        240 TAPSKE  245 (330)
T ss_pred             ECCHHH
Confidence            887643

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.5e-37  Score=244.37  Aligned_cols=152  Identities=20%  Similarity=0.317  Sum_probs=122.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCc---ch-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATI---SV-   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~---~~-   78 (185)
                      +.+++|+||++++| +++|+||||||||||+|+|        |.|.            +..+++ |+||++..+   ++ 
T Consensus        13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~   90 (211)
T cd03264          13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG-YLPQEFGVYPNFTVR   90 (211)
T ss_pred             EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheE-EecCCCcccccCCHH
Confidence            57999999999999 9999999999999999999        4332            123455 899876322   21 


Q ss_pred             --------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297          79 --------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA  137 (185)
Q Consensus        79 --------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~  137 (185)
                                          +.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.
T Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  170 (211)
T cd03264          91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR  170 (211)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence                                23456677887778899999999999999999999 999999999997776666555554


Q ss_pred             HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      +.+ +.+++  +.|+|++||+ .++.++||++++|++|+++..
T Consensus       171 ~~l-~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~  210 (211)
T cd03264         171 NLL-SELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE  210 (211)
T ss_pred             HHH-HHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence            433 66654  5899999999 777789999999999999764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=6e-38  Score=253.49  Aligned_cols=171  Identities=22%  Similarity=0.217  Sum_probs=133.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~   64 (185)
                      ++++++...+     +++.+++|+||++++|++++|+||||||||||+|+|        |.+.+             ...
T Consensus         2 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   76 (256)
T TIGR03873         2 LRLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR   76 (256)
T ss_pred             ceEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh
Confidence            4556665444     236799999999999999999999999999999999        33222             223


Q ss_pred             hCceecCCCCC---cc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..   .+                         .+.++++.+++.+..++++.+||+||+||++||+++ .+
T Consensus        77 i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  155 (256)
T TIGR03873        77 VA-LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE  155 (256)
T ss_pred             eE-EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            45 88887521   11                         123345667777778999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++.++||++++|++|+++..++.++
T Consensus       156 p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  223 (256)
T TIGR03873       156 PKLLLLDEPTNHLDVRAQLETLALV-RELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPRE  223 (256)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHH
Confidence            9999999997777666555555544 66665 58999999999 77889999999999999998887654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.6e-38  Score=274.34  Aligned_cols=176  Identities=18%  Similarity=0.195  Sum_probs=140.0

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------H---------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------F---------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------~---------   61 (185)
                      |.++.++++|+...|     +++.+++|+||++++|++++|+||||||||||+|+| |...         +         
T Consensus         1 ~~~~~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~   75 (506)
T PRK13549          1 MMEYLLEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN   75 (506)
T ss_pred             CCCceEEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC
Confidence            455667888876554     235799999999999999999999999999999999 3221         1         


Q ss_pred             -----HHhhCceecCCCCC---cc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297          62 -----LAQIGCFVPCDSAT---IS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        62 -----~~~~g~~v~~~~~~---~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i  109 (185)
                           ...++ |+||++..   ++                        .+.++++.+++.+..++++++||+|||||++|
T Consensus        76 ~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l  154 (506)
T PRK13549         76 IRDTERAGIA-IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI  154 (506)
T ss_pred             HHHHHHCCeE-EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence                 12245 88887511   11                        13456677888888899999999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  229 (506)
T PRK13549        155 AKALNKQARLLILDEPTASLTESETAVLLDII-RDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG  229 (506)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence            9999 999999999997777766655555544 56665 58999999999 78889999999999999998887765

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-37  Score=254.54  Aligned_cols=178  Identities=17%  Similarity=0.150  Sum_probs=139.1

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH----------HH---------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV----------SV---------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~----------i~---------   60 (185)
                      |-+..++++++...|   .+..+.+++|+||++++|++++|+||||||||||+|+| |.          |.         
T Consensus         1 ~~~~~l~i~~l~~~~---~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~   77 (282)
T PRK13640          1 MKDNIVEFKHVSFTY---PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK   77 (282)
T ss_pred             CCCceEEEEEEEEEc---CCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC
Confidence            556678888877654   22224699999999999999999999999999999999 21          11         


Q ss_pred             ----HHHhhCceecCCCC----Ccc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSA----TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~----~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                          +..+++ |+||++.    ..+                     .+.++++.+++.+..++++++||+||+||++||+
T Consensus        78 ~~~~~~~~ig-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar  156 (282)
T PRK13640         78 TVWDIREKVG-IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG  156 (282)
T ss_pred             CHHHHHhheE-EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence                123455 8998752    112                     1345677788888889999999999999999999


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++ .+|+++|||||++|+|+.....+.+.+ ..+.++.|.|||++||+ .++ ..||++++|++|++++.+++++
T Consensus       157 al~~~P~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~  229 (282)
T PRK13640        157 ILAVEPKIIILDESTSMLDPAGKEQILKLI-RKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVE  229 (282)
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHH
Confidence            99 999999999997777666655555544 56655358999999999 555 6899999999999999887653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=1e-37  Score=245.49  Aligned_cols=151  Identities=15%  Similarity=0.172  Sum_probs=122.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------HHHhhCceecCCCCCc--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------FLAQIGCFVPCDSATI--   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~~~~~g~~v~~~~~~~--   76 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.                +...++ |+||++..+  
T Consensus        14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~v~q~~~~~~~   92 (214)
T cd03292          14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG-VVFQDFRLLPD   92 (214)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheE-EEecCchhccC
Confidence            4699999999999999999999999999999999        3221                123455 999876322  


Q ss_pred             -c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          77 -S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        77 -~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                       +                     .+.++++.+++++..++++.+||+||+||++||+++ .+|+++||||||+|+|+...
T Consensus        93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  172 (214)
T cd03292          93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT  172 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence             1                     123456777888778899999999999999999999 99999999999777777665


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      ..+.+.+ +.+++ .+.|+|++||+ .++..+||++++|++|++
T Consensus       173 ~~~~~~l-~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         173 WEIMNLL-KKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHHH-HHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            5555544 56655 48999999999 777889999999999874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-38  Score=274.63  Aligned_cols=176  Identities=14%  Similarity=0.158  Sum_probs=139.4

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |.++.++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+           
T Consensus         1 ~~~~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~   75 (510)
T PRK09700          1 MATPYISMAGIGKSF-----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK   75 (510)
T ss_pred             CCCceEEEeeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHH
Confidence            455667888876544     235799999999999999999999999999999999        44322           


Q ss_pred             ---HHhhCceecCCCCC---cc----------------------------hhhHHHhhcCcccccccCcCccHHHHHHHH
Q psy5297          62 ---LAQIGCFVPCDSAT---IS----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETA  107 (185)
Q Consensus        62 ---~~~~g~~v~~~~~~---~~----------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~  107 (185)
                         ...++ |+||++..   ++                            .+.++++.+++.+..++++++||+|||||+
T Consensus        76 ~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv  154 (510)
T PRK09700         76 LAAQLGIG-IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML  154 (510)
T ss_pred             HHHHCCeE-EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence               12345 88887421   11                            123456677888788999999999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +||+++ .+|+++||||||+|+|+.....+.+. +..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  231 (510)
T PRK09700        155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI-MNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD  231 (510)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence            999999 99999999999777666555555554 466665 58999999999 78889999999999999998887765

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.7e-37  Score=242.75  Aligned_cols=150  Identities=19%  Similarity=0.239  Sum_probs=121.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCC----Ccc
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSA----TIS   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~----~~~   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+             ...++ |+||++.    ..+
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~t   92 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG-LVFQNPDDQFFGPT   92 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhce-EEecChhhhcCCCc
Confidence            5799999999999999999999999999999999        43321             23455 9998752    112


Q ss_pred             h---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhH
Q psy5297          78 V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFG  135 (185)
Q Consensus        78 ~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~  135 (185)
                      +                     +.++++.+++.+..++++++||+||+||++||+++ .+|+++||||||+|+|+.....
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  172 (211)
T cd03225          93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE  172 (211)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            1                     22356677888778899999999999999999999 9999999999977777666555


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297         136 MACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       136 ~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      +.+.+ ..+++ .+.|+|++||+ .++..+||++++|++|+
T Consensus       173 ~~~~l-~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         173 LLELL-KKLKA-EGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHH-HHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            55544 56665 48999999999 77888999999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=2.3e-37  Score=243.32  Aligned_cols=151  Identities=15%  Similarity=0.131  Sum_probs=121.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------HHhhCceecCCCCCc---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------LAQIGCFVPCDSATI---   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~~~~g~~v~~~~~~~---   76 (185)
                      +.+++++||++++|++++|+||||||||||+|+|        |.+.+               ...++ |+||++..+   
T Consensus        13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~   91 (213)
T cd03262          13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG-MVFQQFNLFPHL   91 (213)
T ss_pred             eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce-EEecccccCCCC
Confidence            5799999999999999999999999999999999        33211               22345 899876322   


Q ss_pred             ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          77 SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        77 ~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                      ++                      +.++++.+++.+..++++.+||+||+||+++|+++ .+|+++||||||+|+|+...
T Consensus        92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~  171 (213)
T cd03262          92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV  171 (213)
T ss_pred             cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence            21                      23455667887778999999999999999999999 99999999999777766655


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      ..+.+. +..+++ .+.|+|++||+ .++.++||++++|++|++
T Consensus       172 ~~l~~~-l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         172 GEVLDV-MKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHH-HHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            555554 366665 58999999999 778899999999999874

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-37  Score=252.79  Aligned_cols=161  Identities=16%  Similarity=0.120  Sum_probs=140.7

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------HHHhhCceecCCCCCcc--
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------FLAQIGCFVPCDSATIS--   77 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~~~~~g~~v~~~~~~~~--   77 (185)
                      .-++|+||+++.|||++|.|-+|||||||+|++        |.|.                ++.+..++|||....+|  
T Consensus        42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr  121 (386)
T COG4175          42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR  121 (386)
T ss_pred             EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence            368999999999999999999999999999999        4332                23444458999875555  


Q ss_pred             ----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297          78 ----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGF  134 (185)
Q Consensus        78 ----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~  134 (185)
                                            .+.++++.+|+.++.++++.+||||||||+.+|||+ .+|+++|||||||.+||+-+.
T Consensus       122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~  201 (386)
T COG4175         122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT  201 (386)
T ss_pred             hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence                                  366788999999999999999999999999999999 999999999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         135 GMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       135 ~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      .++..++ .+.++.++||+++||| .|+.++.|||.+|++|+++..|+|+++
T Consensus       202 ~mQdeLl-~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI  252 (386)
T COG4175         202 EMQDELL-ELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI  252 (386)
T ss_pred             HHHHHHH-HHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence            8888774 4444468999999999 999999999999999999999998764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-37  Score=252.24  Aligned_cols=178  Identities=16%  Similarity=0.127  Sum_probs=137.2

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------   60 (185)
                      |.++.++++++...|-   ++.+++++|+||++++|++++|+||||||||||+|+|        |.|.            
T Consensus         3 ~~~~~l~i~~l~~~~~---~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~   79 (269)
T PRK13648          3 DKNSIIVFKNVSFQYQ---SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFE   79 (269)
T ss_pred             CCCceEEEEEEEEEcC---CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence            3455677777765442   1224599999999999999999999999999999999        3322            


Q ss_pred             -HHHhhCceecCCCC-Cc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          61 -FLAQIGCFVPCDSA-TI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        61 -~~~~~g~~v~~~~~-~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                       +..+++ |+||++. .+   +                     .+..+++.+++.+..++++.+||+||+||++||+++ 
T Consensus        80 ~~~~~i~-~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~  158 (269)
T PRK13648         80 KLRKHIG-IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLA  158 (269)
T ss_pred             HHHhhee-EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence             123455 8888752 11   1                     133556778888888999999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++||||||+|+|+.....+.+.+ ..+.++.+.|+|++||+ .++. .||++++|++|+++..+++++
T Consensus       159 ~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~~~~~tiiivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~  228 (269)
T PRK13648        159 LNPSVIILDEATSMLDPDARQNLLDLV-RKVKSEHNITIISITHDLSEAM-EADHVIVMNKGTVYKEGTPTE  228 (269)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCchHHh-cCCEEEEEECCEEEEecCHHH
Confidence            999999999997777766655555544 55554348999999999 6665 499999999999998887643

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=7e-38  Score=275.18  Aligned_cols=172  Identities=17%  Similarity=0.190  Sum_probs=137.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------------   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------------   62 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+.              
T Consensus        11 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   85 (510)
T PRK15439         11 LLCARSISKQY-----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ   85 (510)
T ss_pred             eEEEEeEEEEe-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence            46666665544     235799999999999999999999999999999999        433221              


Q ss_pred             HhhCceecCCCCCc---c-----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297          63 AQIGCFVPCDSATI---S-----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVII  121 (185)
Q Consensus        63 ~~~g~~v~~~~~~~---~-----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llll  121 (185)
                      ..++ |+||++..+   +                 .+.++++.+++.+..++++++||+|||||++||+++ .+|+++||
T Consensus        86 ~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL  164 (510)
T PRK15439         86 LGIY-LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILIL  164 (510)
T ss_pred             CCEE-EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            1245 999986222   2                 234567788888888999999999999999999999 99999999


Q ss_pred             eCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       122 DEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||+|+|+.....+...+ +.+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       165 DEPt~~LD~~~~~~l~~~l-~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  226 (510)
T PRK15439        165 DEPTASLTPAETERLFSRI-RELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD  226 (510)
T ss_pred             ECCCCCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHH
Confidence            9997776666655555543 66665 58999999999 77889999999999999998877654

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=2.4e-37  Score=245.37  Aligned_cols=171  Identities=18%  Similarity=0.139  Sum_probs=128.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~   61 (185)
                      ++++++...|-.. +....+++|+||++++|++++|+||||||||||+++|        |.+.                +
T Consensus         2 l~~~~v~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           2 LEVKNLSVSFPTG-GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             eEEEeeeEeccCC-CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence            4566665444110 0012699999999999999999999999999999999        3321                1


Q ss_pred             HHhhCceecCCCC--C---cch-----------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHh
Q psy5297          62 LAQIGCFVPCDSA--T---ISV-----------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        62 ~~~~g~~v~~~~~--~---~~~-----------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                      ..+++ |+||++.  .   .++                       +.++++.+++. ...++++.+||+||+||++||++
T Consensus        81 ~~~i~-~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara  159 (228)
T cd03257          81 RKEIQ-MVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA  159 (228)
T ss_pred             hccEE-EEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence            22455 8888861  1   121                       01345667774 56788999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      + .+|+++||||||+|+|+.....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|+++..
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  227 (228)
T cd03257         160 LALNPKLLIADEPTSALDVSVQAQILDLL-KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE  227 (228)
T ss_pred             HhcCCCEEEecCCCCCCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence            9 999999999997777766655555544 55554348999999999 777789999999999998754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=4.1e-37  Score=243.64  Aligned_cols=166  Identities=19%  Similarity=0.181  Sum_probs=129.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~   61 (185)
                      ++++++...+-    +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.                +
T Consensus         2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~   77 (222)
T PRK10908          2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL   77 (222)
T ss_pred             EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHH
Confidence            45566554331    125799999999999999999999999999999999        3321                1


Q ss_pred             HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ...++ |+||++..+   ++                     +.++++.+++.+..++++++||+|||||+++|+++ .+|
T Consensus        78 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  156 (222)
T PRK10908         78 RRQIG-MIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKP  156 (222)
T ss_pred             HhheE-EEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCC
Confidence            23455 999876321   21                     23456777888778899999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      +++|||||++|+|+.....+.+.+ ..+++ .+.++|++||+ .++..+||++++|++|+++.
T Consensus       157 ~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        157 AVLLADEPTGNLDDALSEGILRLF-EEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            999999997776665555555544 56655 48899999999 77888999999999999854

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=5.3e-38  Score=253.50  Aligned_cols=172  Identities=18%  Similarity=0.179  Sum_probs=133.6

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCC
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDS   73 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~   73 (185)
                      +.+++++++..|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+..  .++ |+||++
T Consensus         3 ~~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~-~v~q~~   76 (251)
T PRK09544          3 SLVSLENVSVSF-----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIG-YVPQKL   76 (251)
T ss_pred             cEEEEeceEEEE-----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEE-Eecccc
Confidence            356777766544     235699999999999999999999999999999999        3333322  345 888875


Q ss_pred             CCc-----c--------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          74 ATI-----S--------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        74 ~~~-----~--------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                      ...     +              .+..+++.+++.+..++++.+||+||+||++||+++ .+|+++||||||+|+|+...
T Consensus        77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  156 (251)
T PRK09544         77 YLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ  156 (251)
T ss_pred             ccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            211     1              134456778888888999999999999999999999 99999999999777766655


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ..+.+.+ ..+.++.+.|+|++||+ .++.++||++++|++ +++..++++
T Consensus       157 ~~l~~~L-~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~  205 (251)
T PRK09544        157 VALYDLI-DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPE  205 (251)
T ss_pred             HHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHH
Confidence            5555544 55554348999999999 778899999999975 787777654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.4e-37  Score=247.14  Aligned_cols=171  Identities=13%  Similarity=0.103  Sum_probs=129.1

Q ss_pred             ceEEEcccCCceeeecCCc--eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------
Q psy5297           4 GTLVLNQCRHPIVELQGGV--SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------   61 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~--~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------   61 (185)
                      +.+++++++..|   .++.  ..+++|+||++++|++++|+||||||||||+|+|        |.|.+            
T Consensus         5 ~~l~~~~l~~~~---~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~   81 (228)
T PRK10584          5 NIVEVHHLKKSV---GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA   81 (228)
T ss_pred             ceEEEeeeEEEc---cCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHH
Confidence            456677765433   2211  3599999999999999999999999999999999        33321            


Q ss_pred             ----H-HhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          62 ----L-AQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        62 ----~-~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                          . ..++ |+||++..+   ++                     +.++++.+++.+..++++.+||+||+||++||++
T Consensus        82 ~~~~~~~~i~-~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a  160 (228)
T PRK10584         82 RAKLRAKHVG-FVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA  160 (228)
T ss_pred             HHHHHhheEE-EEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence                1 2345 888876221   21                     2345677788877889999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEE
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      + .+|+++||||||+|+|+.....+.+.+ ..++++.+.|||++||+.+..+.||++++|++|+++++
T Consensus       161 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        161 FNGRPDVLFADEPTGNLDRQTGDKIADLL-FSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            9 999999999997777666555554544 56654358899999999433456999999999998643

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=4.2e-38  Score=238.14  Aligned_cols=159  Identities=16%  Similarity=0.134  Sum_probs=134.5

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHh----------hCceecCCCCCcc---------
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQ----------IGCFVPCDSATIS---------   77 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~----------~g~~v~~~~~~~~---------   77 (185)
                      ..-.++++++.||+++|+||+||||||||++|        |.|++.++          -.+++||+.+.+.         
T Consensus        14 ~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig   93 (231)
T COG3840          14 LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG   93 (231)
T ss_pred             ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence            45567888999999999999999999999999        45544321          1137777764443         


Q ss_pred             ---------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHH
Q psy5297          78 ---------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIA  141 (185)
Q Consensus        78 ---------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il  141 (185)
                                     .++.++.++|+.++.++.+.+||||||||+++||++ .+.+++||||||+.+||.-+.++..++ 
T Consensus        94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv-  172 (231)
T COG3840          94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALV-  172 (231)
T ss_pred             ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHH-
Confidence                           366788899999999999999999999999999999 999999999998888887777777655 


Q ss_pred             HHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         142 RELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       142 ~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ..+.++++.|++|+||. .++.+++++++++++|+|.+.++.++
T Consensus       173 ~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~  216 (231)
T COG3840         173 SQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQE  216 (231)
T ss_pred             HHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHH
Confidence            66666689999999998 99999999999999999999987654

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-37  Score=253.12  Aligned_cols=172  Identities=14%  Similarity=0.142  Sum_probs=135.8

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------------HH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------FL   62 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------~~   62 (185)
                      ++++++...|-    +.+.+++|+||++++||+++|+||||||||||+|+|        |.|.               +.
T Consensus         2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (275)
T PRK13639          2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR   77 (275)
T ss_pred             EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHH
Confidence            45566554431    124699999999999999999999999999999999        4331               12


Q ss_pred             HhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          63 AQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        63 ~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ..++ |+||++.  .+  +                     .+.++++.+++.+..++++.+||+||+||++||+++ .+|
T Consensus        78 ~~i~-~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p  156 (275)
T PRK13639         78 KTVG-IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP  156 (275)
T ss_pred             hheE-EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            3455 9999851  11  1                     133466778888888999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       157 ~llllDEPt~gLD~~~~~~l~~~l-~~l~~-~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  223 (275)
T PRK13639        157 EIIVLDEPTSGLDPMGASQIMKLL-YDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE  223 (275)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999997777776666555544 56665 48999999999 77788999999999999999887653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-37  Score=250.34  Aligned_cols=172  Identities=15%  Similarity=0.142  Sum_probs=130.1

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      +.+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus        11 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~   85 (258)
T PRK14268         11 PQIKVENLNLWY-----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD   85 (258)
T ss_pred             eeEEEeeeEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence            345555555433     235799999999999999999999999999999999 4211                      


Q ss_pred             -----HHHhhCceecCCCCCc--ch---------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSATI--SV---------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~~--~~---------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~  108 (185)
                           +...++ |+||++..+  ++                     +.++++.+++.    +..++++.+||+||+||++
T Consensus        86 ~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~  164 (258)
T PRK14268         86 VDVVELRKNVG-MVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC  164 (258)
T ss_pred             chHHHHhhhEE-EEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence                 112345 888876322  21                     22345556652    3467889999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||++ .+|+++||||||+|+|+.....+.+.+ +.+++  +.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~l~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  239 (258)
T PRK14268        165 IARTLAVKPKIILFDEPTSALDPISTARIEDLI-MNLKK--DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ  239 (258)
T ss_pred             HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHH-HHHhh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999 999999999997777666655554443 55543  7899999999 77789999999999999998877543

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=6.8e-38  Score=261.79  Aligned_cols=179  Identities=16%  Similarity=0.116  Sum_probs=136.4

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH----------HHH----------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV----------SVF----------   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~----------i~~----------   61 (185)
                      ++.++++|+...|-. .++...+++|+||++++||+++|+|+||||||||+++| |.          |.+          
T Consensus        10 ~~~L~i~~l~~~~~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~   88 (330)
T PRK09473         10 DALLDVKDLRVTFST-PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE   88 (330)
T ss_pred             CceEEEeCeEEEEec-CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence            456788888765532 11235699999999999999999999999999999999 21          111          


Q ss_pred             ------H-HhhCceecCCCC--C---cc----------------------hhhHHHhhcCccc---ccccCcCccHHHHH
Q psy5297          62 ------L-AQIGCFVPCDSA--T---IS----------------------VVDQIFTRVGAAD---SQYRGISTFMMEMK  104 (185)
Q Consensus        62 ------~-~~~g~~v~~~~~--~---~~----------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~  104 (185)
                            + ..++ |+||++.  .   ++                      .+.++++.+++.+   ..++++.+|||||+
T Consensus        89 ~~~~~~r~~~i~-~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~  167 (330)
T PRK09473         89 KELNKLRAEQIS-MIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR  167 (330)
T ss_pred             HHHHHHhcCCEE-EEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence                  1 1345 9999862  1   11                      1234556677753   34678999999999


Q ss_pred             HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297         105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      ||++||+++ .+|+++|+||||+++|......+...+ ..++++.+.|+|++||| ..+.++||++++|++|++++.+++
T Consensus       168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL-~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~  246 (330)
T PRK09473        168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL-NELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA  246 (330)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999999 999999999997666665555555543 66665468999999999 667789999999999999999876


Q ss_pred             CC
Q psy5297         183 TN  184 (185)
Q Consensus       183 ~~  184 (185)
                      ++
T Consensus       247 ~~  248 (330)
T PRK09473        247 RD  248 (330)
T ss_pred             HH
Confidence            54

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=272.55  Aligned_cols=173  Identities=17%  Similarity=0.175  Sum_probs=137.0

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------   61 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------   61 (185)
                      +.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+              
T Consensus         3 ~~i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~   77 (501)
T PRK10762          3 ALLQLKGIDKAF-----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ   77 (501)
T ss_pred             ceEEEeeeEEEe-----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence            456777776544     235799999999999999999999999999999999        44322              


Q ss_pred             HHhhCceecCCCCC---cc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          62 LAQIGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        62 ~~~~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      ...++ |+||++..   ++                         .+.++++.+++.+..++++++||+|||||++||+++
T Consensus        78 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  156 (501)
T PRK10762         78 EAGIG-IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL  156 (501)
T ss_pred             hCCEE-EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence            12245 88886411   11                         123456778888888999999999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .+|+++||||||+|+|+.....+.+. +..+++ .+.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       157 ~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (501)
T PRK10762        157 SFESKVIIMDEPTDALTDTETESLFRV-IRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD  227 (501)
T ss_pred             hcCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc
Confidence             99999999999777666655555554 466665 58999999999 88889999999999999998887664

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=9.8e-38  Score=245.65  Aligned_cols=151  Identities=25%  Similarity=0.290  Sum_probs=120.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhCceecCCCCC-----cch---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIGCFVPCDSAT-----ISV---   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g~~v~~~~~~-----~~~---   78 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+        ...++ |+||++..     .++   
T Consensus        12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~~~tv~e~   90 (213)
T cd03235          12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG-YVPQRRSIDRDFPISVRDV   90 (213)
T ss_pred             EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheE-EeccccccccCCCCcHHHH
Confidence            5699999999999999999999999999999999        43322        23455 88887521     121   


Q ss_pred             ----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhH
Q psy5297          79 ----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFG  135 (185)
Q Consensus        79 ----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~  135 (185)
                                            +.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  170 (213)
T cd03235          91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED  170 (213)
T ss_pred             HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence                                  22355667777778899999999999999999999 9999999999977777666555


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         136 MACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       136 ~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      +.+.+ ..+++ .+.|+|++||+ .++.++||++++|++|.+
T Consensus       171 l~~~l-~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~  210 (213)
T cd03235         171 IYELL-RELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRTVV  210 (213)
T ss_pred             HHHHH-HHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence            55544 56655 58999999999 778889999999988643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-37  Score=252.18  Aligned_cols=176  Identities=13%  Similarity=0.075  Sum_probs=133.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------   61 (185)
                      +++++++..|-......+.+++|+||++++|++++|+||||||||||+|+|        |.|.+                
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            667777654421100114699999999999999999999999999999999        33211                


Q ss_pred             -HHhhCceecCCC--CC--cch---------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 -LAQIGCFVPCDS--AT--ISV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 -~~~~g~~v~~~~--~~--~~~---------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                       ...++ |+||++  ..  .++                     ++++++.+++. ...++++.+||+|||||++||+++ 
T Consensus        83 ~~~~i~-~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  161 (280)
T PRK13649         83 IRKKVG-LVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA  161 (280)
T ss_pred             HHhheE-EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence             22345 999874  11  121                     23445667886 457889999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++..+||++++|++|++...+++++
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  231 (280)
T PRK13649        162 MEPKILVLDEPTAGLDPKGRKELMTLF-KKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD  231 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999997777666555555544 56655 48999999999 77888999999999999988876543

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=2.2e-37  Score=238.20  Aligned_cols=145  Identities=17%  Similarity=0.208  Sum_probs=119.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-------------HhhCceecCCCCCcchhhH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-------------AQIGCFVPCDSATISVVDQ   81 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-------------~~~g~~v~~~~~~~~~~~~   81 (185)
                      +.+++++||++++|++++|+||||||||||+|+|        |.|.+.             ..++ |+||          
T Consensus        12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~-~~~q----------   80 (180)
T cd03214          12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIA-YVPQ----------   80 (180)
T ss_pred             eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHh-HHHH----------
Confidence            5799999999999999999999999999999999        222211             1122 3333          


Q ss_pred             HHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-h
Q psy5297          82 IFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-H  159 (185)
Q Consensus        82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~  159 (185)
                      +++.+++.+..++.+.+||+||+||+++||++ .+|+++||||||+|+|+.....+.+.+ +.++++.+.|+|++||+ .
T Consensus        81 ~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l-~~~~~~~~~tiii~sh~~~  159 (180)
T cd03214          81 ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL-RRLARERGKTVVMVLHDLN  159 (180)
T ss_pred             HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHH
Confidence            77888998888999999999999999999999 999999999997777776655555544 66655237899999999 7


Q ss_pred             HHHHhhccccceeeeeEEEE
Q psy5297         160 EIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       160 ~~~~~~d~~~~l~~g~i~~~  179 (185)
                      ++.++||+++++++|++...
T Consensus       160 ~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         160 LAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             HHHHhCCEEEEEECCEEEec
Confidence            77899999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.3e-37  Score=247.87  Aligned_cols=169  Identities=15%  Similarity=0.169  Sum_probs=130.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------------   60 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------------   60 (185)
                      +++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                        
T Consensus         2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~   76 (247)
T TIGR00972         2 IEIENLNLFY-----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID   76 (247)
T ss_pred             EEEEEEEEEE-----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence            4555655433     235699999999999999999999999999999999 3221                        


Q ss_pred             ---HHHhhCceecCCCCC--cch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHHH
Q psy5297          61 ---FLAQIGCFVPCDSAT--ISV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        61 ---~~~~~g~~v~~~~~~--~~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~i  109 (185)
                         +...++ |+||++..  .++                      +..+++.+++.    +..++++.+||+|||||++|
T Consensus        77 ~~~~~~~i~-~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l  155 (247)
T TIGR00972        77 VVELRRRVG-MVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI  155 (247)
T ss_pred             hHHHHhheE-EEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence               012344 88887522  121                      22345666776    66788999999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus       156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~  228 (247)
T TIGR00972       156 ARALAVEPEVLLLDEPTSALDPIATGKIEELI-QELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTE  228 (247)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999 999999999997777666655555543 56654  4899999999 7788999999999999999887654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-37  Score=255.12  Aligned_cols=178  Identities=13%  Similarity=0.094  Sum_probs=134.1

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------   61 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------   61 (185)
                      +.++++|+...|-........+++|+||++++|++++|+||||||||||+|+|        |.|.+              
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            34667777654411000013599999999999999999999999999999999        43321              


Q ss_pred             ----HHhhCceecCCCC--Cc--ch---------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHH
Q psy5297          62 ----LAQIGCFVPCDSA--TI--SV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        62 ----~~~~g~~v~~~~~--~~--~~---------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                          ...++ |+||++.  .+  ++                     +..+++.+++. +..++++++||+||+||++||+
T Consensus        85 ~~~~~~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar  163 (289)
T PRK13645         85 VKRLRKEIG-LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG  163 (289)
T ss_pred             HHHHhccEE-EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence                12345 8998751  11  11                     23456677884 5778999999999999999999


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++ .+|+++|||||++|+|+.....+.+.+ ..+.++.+.|||++||+ .++.++||++++|++|+++..++++
T Consensus       164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~  236 (289)
T PRK13645        164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLF-ERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF  236 (289)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99 999999999997777776655555544 55554358999999999 7788999999999999998887654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-37  Score=247.99  Aligned_cols=174  Identities=16%  Similarity=0.127  Sum_probs=132.9

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-------------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-------------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-------------------   60 (185)
                      |+.+.++++++...|-     .+.+++|+||++++|++++|+||||||||||+++| |...                   
T Consensus         1 ~~~~~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~   75 (252)
T PRK14239          1 MTEPILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY   75 (252)
T ss_pred             CCCceEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence            6667788888876552     25799999999999999999999999999999999 3210                   


Q ss_pred             --------HHHhhCceecCCCCC--cchhhH----------------------HHhhcCcc----cccccCcCccHHHHH
Q psy5297          61 --------FLAQIGCFVPCDSAT--ISVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMK  104 (185)
Q Consensus        61 --------~~~~~g~~v~~~~~~--~~~~~~----------------------~l~~~~l~----~~~~~~~~~lS~g~~  104 (185)
                              +...++ |+||++..  .++.++                      +++.+++.    +..++.+.+||+|||
T Consensus        76 ~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  154 (252)
T PRK14239         76 SPRTDTVDLRKEIG-MVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ  154 (252)
T ss_pred             CcccchHhhhhcEE-EEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence                    112344 88988632  232222                      23334432    235778899999999


Q ss_pred             HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297         105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      ||++||+++ .+|+++|||||++|+|+.....+.+.+ +.+.+  +.|||++||+ .++.++||++++|++|++...+++
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  231 (252)
T PRK14239        155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL-LGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT  231 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            999999999 999999999997777666655555544 55543  5899999999 778899999999999999988765


Q ss_pred             C
Q psy5297         183 T  183 (185)
Q Consensus       183 ~  183 (185)
                      +
T Consensus       232 ~  232 (252)
T PRK14239        232 K  232 (252)
T ss_pred             H
Confidence            4

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=8e-38  Score=249.28  Aligned_cols=155  Identities=17%  Similarity=0.155  Sum_probs=123.3

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--------hhCceecCCCCC---cch--------
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--------QIGCFVPCDSAT---ISV--------   78 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--------~~g~~v~~~~~~---~~~--------   78 (185)
                      ++|+||++++|++++|+||||||||||+|+|        |.|.+..        ..+ |+||++..   .++        
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-~v~q~~~l~~~~tv~e~l~~~~   79 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM-VVFQNYSLLPWLTVRENIALAV   79 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhe-EEecCcccCCCCCHHHHHHHHH
Confidence            5799999999999999999999999999999        4443321        124 88887521   121        


Q ss_pred             ---------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297          79 ---------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR  142 (185)
Q Consensus        79 ---------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~  142 (185)
                                     +.++++.+++.+..++++++||+|||||++||+++ .+|+++|||||++|+|+.....+.+.+ .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l-~  158 (230)
T TIGR01184        80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL-M  158 (230)
T ss_pred             HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH-H
Confidence                           23446667887778899999999999999999999 999999999997777766655555544 5


Q ss_pred             HHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297         143 ELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      .+.++.+.|||++||+ .++.++||++++|++|+++..++.
T Consensus       159 ~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~  199 (230)
T TIGR01184       159 QIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI  199 (230)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCc
Confidence            5554358999999999 778899999999999999877654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=9.8e-38  Score=253.87  Aligned_cols=178  Identities=13%  Similarity=0.063  Sum_probs=134.6

Q ss_pred             ceEEEcccCCceeeecC----CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------
Q psy5297           4 GTLVLNQCRHPIVELQG----GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------   61 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~----~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------   61 (185)
                      +.++++++...|-....    +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+          
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence            45777887765521100    124699999999999999999999999999999999        43322          


Q ss_pred             ---HHhhCceecCCCC--Cc---c----------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHH
Q psy5297          62 ---LAQIGCFVPCDSA--TI---S----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        62 ---~~~~g~~v~~~~~--~~---~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia  110 (185)
                         ...++ |+||++.  ..   +                      .+.++++.+++. +..++.+++||+||+||++||
T Consensus        83 ~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  161 (267)
T PRK15112         83 SYRSQRIR-MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA  161 (267)
T ss_pred             hhHhccEE-EEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence               12345 8888752  00   1                      123456778884 567888899999999999999


Q ss_pred             HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         111 KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       111 ~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +++ .+|+++||||||+|+|+.....+.+.+ ..+.++.|.|||++||+ .++..+||++++|++|+++..++++
T Consensus       162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~  235 (267)
T PRK15112        162 RALILRPKVIIADEALASLDMSMRSQLINLM-LELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTA  235 (267)
T ss_pred             HHHHhCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence            999 999999999997776665544444444 55554348999999999 7788899999999999998877654

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=1.2e-37  Score=244.87  Aligned_cols=151  Identities=15%  Similarity=0.163  Sum_probs=121.9

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c-------
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S-------   77 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~-------   77 (185)
                      .|+||++++|++++|+||||||||||+|+|        |.+.+           ...++ |+||++..+   +       
T Consensus        15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~   93 (211)
T cd03298          15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS-MLFQENNLFAHLTVEQNVGL   93 (211)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEE-EEecccccCCCCcHHHHHhc
Confidence            399999999999999999999999999999        44432           12345 888875221   1       


Q ss_pred             --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297          78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR  142 (185)
Q Consensus        78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~  142 (185)
                                    .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++|||||++|+|+.....+.+.+ .
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l-~  172 (211)
T cd03298          94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV-L  172 (211)
T ss_pred             ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-H
Confidence                          123456677887778899999999999999999999 999999999997777776666665544 5


Q ss_pred             HHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         143 ELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      .++++.+.|+|++||+ .++.++||++++|++|+++..
T Consensus       173 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  210 (211)
T cd03298         173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             HHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence            5554358999999999 778899999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.5e-37  Score=252.52  Aligned_cols=177  Identities=15%  Similarity=0.108  Sum_probs=134.7

Q ss_pred             EEEcccCCceeeec----CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------
Q psy5297           6 LVLNQCRHPIVELQ----GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~----~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------   61 (185)
                      +++++++..|-...    .+.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+            
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~   82 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ   82 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence            56666655442100    0136799999999999999999999999999999999        33311            


Q ss_pred             ----HHhhCceecCCCC--C---cc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHH
Q psy5297          62 ----LAQIGCFVPCDSA--T---IS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        62 ----~~~~g~~v~~~~~--~---~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~i  109 (185)
                          ...++ |+||++.  .   .+                      .+.++++.+++. +..++++.+||+||+||++|
T Consensus        83 ~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l  161 (265)
T TIGR02769        83 RRAFRRDVQ-LVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI  161 (265)
T ss_pred             HHHHhhceE-EEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence                22355 8998741  1   11                      123456777885 56788999999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++ .+|+++||||||+|+|+.....+.+.+ +.+.++.+.|||++||+ ..+..+||++++|++|+++..+++++
T Consensus       162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  237 (265)
T TIGR02769       162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELL-RKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQ  237 (265)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHH
Confidence            9999 999999999997777666555555544 55554358999999999 77778999999999999998887654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-37  Score=248.65  Aligned_cols=172  Identities=16%  Similarity=0.141  Sum_probs=130.8

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      +.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus         6 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   80 (254)
T PRK14273          6 AIIETENLNLFY-----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN   80 (254)
T ss_pred             ceEEEeeeEEEe-----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence            457777776554     225699999999999999999999999999999999 3221                      


Q ss_pred             -----HHHhhCceecCCCCC--cchhh----------------------HHHhhcCc----ccccccCcCccHHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSAT--ISVVD----------------------QIFTRVGA----ADSQYRGISTFMMEMKETA  107 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~--~~~~~----------------------~~l~~~~l----~~~~~~~~~~lS~g~~q~~  107 (185)
                           +...++ |+||++..  .++.+                      ++++.+++    .+..++++++||+|||||+
T Consensus        81 ~~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv  159 (254)
T PRK14273         81 FDILELRRKIG-MVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL  159 (254)
T ss_pred             ccHHHHhhceE-EEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH
Confidence                 112344 88887632  22222                      22334444    2346788999999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|||++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  235 (254)
T PRK14273        160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELI-INLKE--SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE  235 (254)
T ss_pred             HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999 999999999997777766655555544 55643  6899999999 77789999999999999998887543

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=252.97  Aligned_cols=176  Identities=17%  Similarity=0.173  Sum_probs=136.4

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------H-
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------L-   62 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------~-   62 (185)
                      |.+..++++++...|-    +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+         . 
T Consensus         2 ~~~~~l~~~~l~~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   77 (272)
T PRK15056          2 MQQAGIVVNDVTVTWR----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK   77 (272)
T ss_pred             chhceEEEEeEEEEec----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhcc
Confidence            4455677777765442    135799999999999999999999999999999999        33322         1 


Q ss_pred             HhhCceecCCCCC---c--c-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          63 AQIGCFVPCDSAT---I--S-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        63 ~~~g~~v~~~~~~---~--~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                      ..++ |+||++..   +  .                         .+.++++.+++.+..++++.+||+||+||++||++
T Consensus        78 ~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~lara  156 (272)
T PRK15056         78 NLVA-YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARA  156 (272)
T ss_pred             ceEE-EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence            1245 88886411   0  0                         12345677888888899999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      + .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||+++++ +|++...+++++
T Consensus       157 L~~~p~llllDEPt~~LD~~~~~~l~~~L-~~~~~-~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~  227 (272)
T PRK15056        157 IAQQGQVILLDEPFTGVDVKTEARIISLL-RELRD-EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET  227 (272)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence            9 999999999997777776655555544 66665 58999999999 7888999999777 899988887654

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-37  Score=244.92  Aligned_cols=155  Identities=17%  Similarity=0.188  Sum_probs=124.2

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c-----
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S-----   77 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~-----   77 (185)
                      ++.|+||++++|++++|+||||||||||+|+|        |.|.+           ...++ |+||++..+   +     
T Consensus        13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~~~~~~t~~en~   91 (213)
T TIGR01277        13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS-MLFQENNLFAHLTVRQNI   91 (213)
T ss_pred             cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceE-EEeccCccCCCCcHHHHH
Confidence            46799999999999999999999999999999        43322           12344 888876221   1     


Q ss_pred             ----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297          78 ----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI  140 (185)
Q Consensus        78 ----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i  140 (185)
                                      .+.++++.+++.+..++.+.+||+||+||++||+++ .+|+++|||||++|+|......+.+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  171 (213)
T TIGR01277        92 GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV  171 (213)
T ss_pred             HhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence                            123456777888788999999999999999999999 999999999997776666655555544


Q ss_pred             HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         141 ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       141 l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                       +.+.++.+.|+|++||+ .++.++||++++|++|++...++
T Consensus       172 -~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       172 -KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             -HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence             55554348999999999 77788999999999999988765

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-37  Score=252.93  Aligned_cols=174  Identities=16%  Similarity=0.151  Sum_probs=133.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FL   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~   62 (185)
                      +.++++++...|-   ++.+.+++|+||++++|++++|+||||||||||+|+|        |.|.             +.
T Consensus         6 ~~l~~~nl~~~~~---~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~   82 (271)
T PRK13632          6 VMIKVENVSFSYP---NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIR   82 (271)
T ss_pred             eEEEEEeEEEEcC---CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHh
Confidence            3466666655441   1235799999999999999999999999999999999        4332             12


Q ss_pred             HhhCceecCCCC----Ccch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          63 AQIGCFVPCDSA----TISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        63 ~~~g~~v~~~~~----~~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ..++ |+||++.    ..++                     +.++++.+++.+..++.+.+||+||+||++||+++ .+|
T Consensus        83 ~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  161 (271)
T PRK13632         83 KKIG-IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP  161 (271)
T ss_pred             cceE-EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            3355 9998751    1121                     23456777888888999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +++||||||+|+|+.....+.+.+ ..++++.+.|+|++||+ .++ ..||++++|++|++...++.+
T Consensus       162 ~lllLDEP~~gLD~~~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~-~~~d~v~~l~~G~i~~~g~~~  227 (271)
T PRK13632        162 EIIIFDESTSMLDPKGKREIKKIM-VDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPK  227 (271)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEEechhHH-hhCCEEEEEECCEEEEecCHH
Confidence            999999997777666555555544 55554235899999999 555 589999999999998877654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=1.3e-37  Score=248.26  Aligned_cols=159  Identities=18%  Similarity=0.125  Sum_probs=129.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S---   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~---   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+           ...++ |+||++..+   +   
T Consensus        13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~~   91 (232)
T cd03300          13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN-TVFQNYALFPHLTVFE   91 (232)
T ss_pred             eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceE-EEecccccCCCCcHHH
Confidence            5799999999999999999999999999999999        43322           12344 888876322   2   


Q ss_pred             ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                                        .+..+++.+++.+..++.+.+||+||+||++||+++ .+|+++|||||++|+|+.....+.+
T Consensus        92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~  171 (232)
T cd03300          92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQL  171 (232)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                              123456778888888999999999999999999999 9999999999977777766665555


Q ss_pred             HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      .+ ..++++.+.|||++||+ .++.++||+++++++|++...++.+
T Consensus       172 ~l-~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~  216 (232)
T cd03300         172 EL-KRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE  216 (232)
T ss_pred             HH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence            44 56655348999999999 7788999999999999998877643

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-37  Score=250.24  Aligned_cols=171  Identities=15%  Similarity=0.111  Sum_probs=132.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------HHH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------FLA   63 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~~~   63 (185)
                      ++++++...|-    +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.              +..
T Consensus         2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (274)
T PRK13644          2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK   77 (274)
T ss_pred             EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh
Confidence            45555554331    124599999999999999999999999999999999        4321              123


Q ss_pred             hhCceecCCCC--C--cc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          64 QIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        64 ~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      .++ |+||++.  .  .+                     .+.++++.+++.+..++++.+||+||+||++||+++ .+|+
T Consensus        78 ~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~  156 (274)
T PRK13644         78 LVG-IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE  156 (274)
T ss_pred             heE-EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            355 8888752  1  12                     133456778888888999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||||||+|+|+.....+.+. +..+++ .|.|||++||+ .++ ..||++++|++|+++..+++++
T Consensus       157 lllLDEPt~gLD~~~~~~l~~~-l~~l~~-~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~  221 (274)
T PRK13644        157 CLIFDEVTSMLDPDSGIAVLER-IKKLHE-KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPEN  221 (274)
T ss_pred             EEEEeCCcccCCHHHHHHHHHH-HHHHHh-CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHH
Confidence            9999999777766655555454 366665 58999999999 555 6799999999999998887543

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.7e-37  Score=245.56  Aligned_cols=171  Identities=16%  Similarity=0.136  Sum_probs=130.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH----H--------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS----V--------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i----~--------------------   60 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+|...    .                    
T Consensus         3 ~l~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   77 (250)
T PRK14245          3 KIDARDVNFWY-----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV   77 (250)
T ss_pred             EEEEEEEEEEE-----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence            45666666544     235699999999999999999999999999999999321    0                    


Q ss_pred             ----HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCccc----ccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAAD----SQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++..+  ++                      ++++++.+++.+    ..++++.+||+|||||++
T Consensus        78 ~~~~~~~~i~-~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  156 (250)
T PRK14245         78 QVDELRKNVG-MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC  156 (250)
T ss_pred             cHHHHhhheE-EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH
Confidence                112345 888875221  11                      223455566642    457888999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||+++ .+|+++||||||+|+|+.....+.+.+ ..+.+  +.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~  231 (250)
T PRK14245        157 IARAMAVSPSVLLMDEPASALDPISTAKVEELI-HELKK--DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK  231 (250)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence            99999 999999999997777766655555544 55543  6899999999 77889999999999999998887653

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-37  Score=246.85  Aligned_cols=171  Identities=12%  Similarity=0.138  Sum_probs=131.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .+++++++..+     +++.+++|+||++++|++++|+||||||||||+++| |...                       
T Consensus         3 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   77 (250)
T PRK14247          3 KIEIRDLKVSF-----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV   77 (250)
T ss_pred             eEEEEeeEEEE-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence            46777776544     235799999999999999999999999999999999 4321                       


Q ss_pred             --HHHhhCceecCCCCC---cchh-----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297          61 --FLAQIGCFVPCDSAT---ISVV-----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 --~~~~~g~~v~~~~~~---~~~~-----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~  108 (185)
                        +...++ |+||++..   .++.                       .++++.+++.    +..++++.+||+||+||++
T Consensus        78 ~~~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~  156 (250)
T PRK14247         78 IELRRRVQ-MVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC  156 (250)
T ss_pred             HHHhccEE-EEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence              112344 88887632   2222                       2234455653    2467889999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++ .+|+++||||||+|+|+.....+.+.+ +.+++  +.|+|++||+ .++.++||++++|++|++...+++++
T Consensus       157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  231 (250)
T PRK14247        157 IARALAFQPEVLLADEPTANLDPENTAKIESLF-LELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE  231 (250)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence            99999 999999999997777776666555544 55543  7899999999 77788999999999999998877543

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1.7e-37  Score=250.22  Aligned_cols=173  Identities=17%  Similarity=0.148  Sum_probs=133.2

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-------------   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-------------   62 (185)
                      +.+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+.             
T Consensus         2 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~   76 (253)
T TIGR02323         2 PLLQVSGLSKSY-----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLS   76 (253)
T ss_pred             ceEEEeeeEEEe-----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCC
Confidence            456777776654     224689999999999999999999999999999999        322110             


Q ss_pred             ---------HhhCceecCCCC-----Ccc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHH
Q psy5297          63 ---------AQIGCFVPCDSA-----TIS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKE  105 (185)
Q Consensus        63 ---------~~~g~~v~~~~~-----~~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q  105 (185)
                               ..++ |+||++.     ..+                      .+.++++.+++. ...++.+.+||+||+|
T Consensus        77 ~~~~~~~~~~~i~-~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q  155 (253)
T TIGR02323        77 EAERRRLMRTEWG-FVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ  155 (253)
T ss_pred             HHHHHHhhhcceE-EEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence                     1244 8888752     111                      123446677776 4678899999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |++||+++ .+|+++|||||++|+|+.....+.+.+ ..+.++.+.|+|++||+ .++..+||++++|++|+++..++++
T Consensus       156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~  234 (253)
T TIGR02323       156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL-RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD  234 (253)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence            99999999 999999999997776666655555544 45544358999999999 7777899999999999999887654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=4.5e-37  Score=245.80  Aligned_cols=157  Identities=17%  Similarity=0.214  Sum_probs=123.6

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecC-CCC---Cc
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPC-DSA---TI   76 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~-~~~---~~   76 (185)
                      +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+            ..+++ |+|+ .+.   .+
T Consensus        32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~~~~  110 (236)
T cd03267          32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG-VVFGQKTQLWWDL  110 (236)
T ss_pred             CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEE-EEcCCccccCCCC
Confidence            456799999999999999999999999999999999        33322            12345 7774 321   11


Q ss_pred             ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297          77 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGF  134 (185)
Q Consensus        77 ~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~  134 (185)
                      ++                     +..+++.+++.+..++++.+||+||+||+.+|+++ .+|+++|||||++|+|+....
T Consensus       111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  190 (236)
T cd03267         111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE  190 (236)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            21                     23456667887778899999999999999999999 999999999997776666655


Q ss_pred             HHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         135 GMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       135 ~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      .+.+.+ ..++++.+.|||++||+ .++..+||++++|++|++++.
T Consensus       191 ~l~~~l-~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  235 (236)
T cd03267         191 NIRNFL-KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD  235 (236)
T ss_pred             HHHHHH-HHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence            555544 56654358899999999 677899999999999999765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-37  Score=247.19  Aligned_cols=169  Identities=14%  Similarity=0.093  Sum_probs=130.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG   66 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g   66 (185)
                      ++++++...|-     ..  ..|+||++++|++++|+||||||||||+|+|        |.+.+           ...++
T Consensus         2 l~~~~l~~~~~-----~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~   74 (232)
T PRK10771          2 LKLTDITWLYH-----HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVS   74 (232)
T ss_pred             eEEEEEEEEEC-----Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEE
Confidence            45566655441     12  2389999999999999999999999999999        43322           12344


Q ss_pred             ceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297          67 CFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVII  121 (185)
Q Consensus        67 ~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llll  121 (185)
                       |+||.+..+   +                     .+.++++.+++.+..++++.+||+||+||++||+++ .+|+++||
T Consensus        75 -~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL  153 (232)
T PRK10771         75 -MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLL  153 (232)
T ss_pred             -EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence             888875211   1                     133456777888888999999999999999999999 99999999


Q ss_pred             eCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       122 DEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |||++|+|......+.+.+ ..+.++.+.|+|++||+ .++.++||++++|++|++...++++
T Consensus       154 DEP~~gLD~~~~~~~~~~l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~  215 (232)
T PRK10771        154 DEPFSALDPALRQEMLTLV-SQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTD  215 (232)
T ss_pred             eCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9997777666655555544 55544358999999999 7778899999999999999887754

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-37  Score=247.81  Aligned_cols=172  Identities=14%  Similarity=0.121  Sum_probs=130.3

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------   60 (185)
                      ++.++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                     
T Consensus        11 ~~~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~   85 (260)
T PRK10744         11 PSKIQVRNLNFYY-----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP   85 (260)
T ss_pred             CceEEEEEEEEEe-----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence            4466777776554     225799999999999999999999999999999999 4321                     


Q ss_pred             ------HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHH
Q psy5297          61 ------FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKET  106 (185)
Q Consensus        61 ------~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~  106 (185)
                            +..+++ |+||++..+  ++                      +.++++.+++.    +..++++.+||+||+||
T Consensus        86 ~~~~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr  164 (260)
T PRK10744         86 KQDIALLRAKVG-MVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQR  164 (260)
T ss_pred             ccchHHHhcceE-EEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHH
Confidence                  012244 888875221  21                      22344555552    34678889999999999


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus       165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  240 (260)
T PRK10744        165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELI-TELKQ--DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD  240 (260)
T ss_pred             HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999 999999999997776665545444433 55543  6899999999 7778899999999999999887654

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=261.96  Aligned_cols=155  Identities=18%  Similarity=0.168  Sum_probs=127.6

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCcc-----
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATIS-----   77 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~~-----   77 (185)
                      |+||++++|++++|+||||||||||+|+|        |.|.+                 ...++ |+||+...++     
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~   94 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG-YVFQDARLFPHYKVR   94 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE-EEcCCcccCCCCcHH
Confidence            89999999999999999999999999999        33321                 22345 8999873332     


Q ss_pred             -------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHH
Q psy5297          78 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARE  143 (185)
Q Consensus        78 -------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~  143 (185)
                                   .++++++.+++.+..++++.+||+|||||++|||++ .+|+++|||||++|+|+.....+.+.+ +.
T Consensus        95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L-~~  173 (352)
T PRK11144         95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL-ER  173 (352)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-HH
Confidence                         244567888998889999999999999999999999 999999999997777666655555544 56


Q ss_pred             HHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         144 LASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       144 l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.++.+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus       174 l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  215 (352)
T PRK11144        174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE  215 (352)
T ss_pred             HHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence            655358999999999 78889999999999999999887654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.6e-37  Score=272.06  Aligned_cols=178  Identities=14%  Similarity=0.109  Sum_probs=134.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------------   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------------   62 (185)
                      .++++++...|-...++.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+.              
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~  358 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD  358 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence            4556665543311011224699999999999999999999999999999999        444331              


Q ss_pred             ------HhhCceecCCCCCc---ch--------------------hhHHHhhcCccc-----ccccCcCccHHHHHHHHH
Q psy5297          63 ------AQIGCFVPCDSATI---SV--------------------VDQIFTRVGAAD-----SQYRGISTFMMEMKETAT  108 (185)
Q Consensus        63 ------~~~g~~v~~~~~~~---~~--------------------~~~~l~~~~l~~-----~~~~~~~~lS~g~~q~~~  108 (185)
                            ..++ |+||++..+   ++                    +.++++.+++.+     ..++++.+||+|||||++
T Consensus       359 ~~~~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~  437 (520)
T TIGR03269       359 GRGRAKRYIG-ILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA  437 (520)
T ss_pred             hHHHHhhhEE-EEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence                  1245 999975221   11                    223566778764     468999999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||+++ .+|+++||||||+|+|+.....+.+.+ ..++++.|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  514 (520)
T TIGR03269       438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI-LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE  514 (520)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999 999999999997776666655555544 56654358999999999 78889999999999999998876643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=2.1e-37  Score=248.00  Aligned_cols=158  Identities=20%  Similarity=0.207  Sum_probs=122.8

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH---------HHH------------HHh--hCceecCCCCCcc-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV---------SVF------------LAQ--IGCFVPCDSATIS-   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~---------i~~------------~~~--~g~~v~~~~~~~~-   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+| |.         |.+            ...  ++ |+||++..++ 
T Consensus        13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~   91 (243)
T TIGR01978        13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF-LAFQYPEEIPG   91 (243)
T ss_pred             EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE-eeeccccccCC
Confidence            5799999999999999999999999999999999 33         111            011  33 8888763211 


Q ss_pred             ------------------------------hhhHHHhhcCcc-cccccCcC-ccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297          78 ------------------------------VVDQIFTRVGAA-DSQYRGIS-TFMMEMKETATVIKKC-TENSLVIIDEL  124 (185)
Q Consensus        78 ------------------------------~~~~~l~~~~l~-~~~~~~~~-~lS~g~~q~~~ia~~l-~~p~llllDEP  124 (185)
                                                    .+.++++.+++. +..++++. +||+|||||++||+++ .+|+++|||||
T Consensus        92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  171 (243)
T TIGR01978        92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI  171 (243)
T ss_pred             cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence                                          122345556775 35677776 5999999999999999 99999999999


Q ss_pred             CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEeccC
Q psy5297         125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~~  183 (185)
                      |+|+|+.....+.+.+ ..+++ .+.|||++||+ .++..+ ||++++|++|++...++++
T Consensus       172 t~~LD~~~~~~l~~~l-~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~  230 (243)
T TIGR01978       172 DSGLDIDALKIVAEGI-NRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE  230 (243)
T ss_pred             cccCCHHHHHHHHHHH-HHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence            7777766655555544 56655 58999999999 777777 8999999999999887764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-37  Score=248.25  Aligned_cols=170  Identities=18%  Similarity=0.199  Sum_probs=127.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus        21 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   95 (268)
T PRK14248         21 ILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI   95 (268)
T ss_pred             eEEEEEEEEEe-----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence            45555554433     235799999999999999999999999999999999 4321                       


Q ss_pred             ----HHHhhCceecCCCCCc--chhh----------------------HHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI--SVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~--~~~~----------------------~~l~~~~l~----~~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++..+  ++.+                      ++++.+++.    +..++++.+||+||+||++
T Consensus        96 ~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~  174 (268)
T PRK14248         96 NVVNLRREIG-MVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC  174 (268)
T ss_pred             cHHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence                111244 888876322  2211                      223334442    3457889999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ||+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|||++||+ .++.++||++++|++|+++..++++
T Consensus       175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~  248 (268)
T PRK14248        175 IARTLAMKPAVLLLDEPASALDPISNAKIEELI-TELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE  248 (268)
T ss_pred             HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHH-HHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999 999999999997777776666555544 55554  5899999999 7788999999999999999887654

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.4e-37  Score=245.93  Aligned_cols=170  Identities=14%  Similarity=0.092  Sum_probs=129.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus         4 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~   78 (253)
T PRK14267          4 AIETVNLRVYY-----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV   78 (253)
T ss_pred             eEEEEeEEEEe-----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence            57777776544     235799999999999999999999999999999999 4321                       


Q ss_pred             ----HHHhhCceecCCCCCc---chh-----------------------hHHHhhcCcc----cccccCcCccHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI---SVV-----------------------DQIFTRVGAA----DSQYRGISTFMMEMKET  106 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~---~~~-----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~  106 (185)
                          +..+++ |+||++..+   ++.                       .++++.+++.    +..++++.+||+|||||
T Consensus        79 ~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  157 (253)
T PRK14267         79 DPIEVRREVG-MVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQR  157 (253)
T ss_pred             ChHHHhhcee-EEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHH
Confidence                112344 888876222   221                       2234445553    34677899999999999


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++||+++ .+|+++|||||++|+|+.....+.+.+ +.+++  +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus       158 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  233 (253)
T PRK14267        158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELL-FELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR  233 (253)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            9999999 999999999997777665555554444 55543  5899999999 7778899999999999999887654

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-36  Score=246.62  Aligned_cols=172  Identities=16%  Similarity=0.137  Sum_probs=130.5

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------   60 (185)
                      .+.++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                     
T Consensus        17 ~~~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~   91 (267)
T PRK14235         17 EIKMRARDVSVFY-----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP   91 (267)
T ss_pred             CceEEEEeEEEEE-----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccc
Confidence            3456667766544     235799999999999999999999999999999999 4331                     


Q ss_pred             ------HHHhhCceecCCCCCc--ch-----------------------hhHHHhhcCccc----ccccCcCccHHHHHH
Q psy5297          61 ------FLAQIGCFVPCDSATI--SV-----------------------VDQIFTRVGAAD----SQYRGISTFMMEMKE  105 (185)
Q Consensus        61 ------~~~~~g~~v~~~~~~~--~~-----------------------~~~~l~~~~l~~----~~~~~~~~lS~g~~q  105 (185)
                            +...++ |+||++..+  ++                       +.++++.+++.+    ..++++.+||+||+|
T Consensus        92 ~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q  170 (267)
T PRK14235         92 RLDVVELRARVG-MVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ  170 (267)
T ss_pred             ccchHHHhhceE-EEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence                  012234 888875222  21                       123445556642    356788999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |++||+++ .+|+++||||||+|+|+.....+.+.+ +.+++  +.|||++||+ .++..+||++++|++|+++..++++
T Consensus       171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~  247 (267)
T PRK14235        171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI-DELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE  247 (267)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            99999999 999999999997776666555554443 55543  6899999999 7788999999999999999887654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=3.6e-37  Score=269.37  Aligned_cols=171  Identities=13%  Similarity=0.042  Sum_probs=136.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~   63 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+             ..
T Consensus         3 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~   77 (490)
T PRK10938          3 SLQISQGTFRL-----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK   77 (490)
T ss_pred             eEEEEeEEEEc-----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH
Confidence            46777776554     235699999999999999999999999999999999        33321             12


Q ss_pred             hhCceecCCCC-----------Ccc-------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297          64 QIGCFVPCDSA-----------TIS-------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSL  118 (185)
Q Consensus        64 ~~g~~v~~~~~-----------~~~-------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l  118 (185)
                      .++ |+||.+.           .++             .+.++++.+++.+..++++++||+|||||++||+++ .+|++
T Consensus        78 ~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  156 (490)
T PRK10938         78 LVS-DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL  156 (490)
T ss_pred             Hhc-eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            345 8887642           112             234567888998888999999999999999999999 99999


Q ss_pred             EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||++++|++|+++..++++
T Consensus       157 llLDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~  220 (490)
T PRK10938        157 LILDEPFDGLDVASRQQLAELL-ASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE  220 (490)
T ss_pred             EEEcCCcccCCHHHHHHHHHHH-HHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            9999997776666655555544 66665 48999999999 8888999999999999998887654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.8e-37  Score=258.93  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=126.4

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc---ch-
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI---SV-   78 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~---~~-   78 (185)
                      |+||++++|++++|+||||||||||||+|        |.|.+                 ...++ |+||++..+   ++ 
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~   93 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG-YVFQEARLFPHLSVR   93 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE-EEecCCccCCCCcHH
Confidence            99999999999999999999999999999        43321                 12345 889876322   21 


Q ss_pred             ------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHH
Q psy5297          79 ------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACS  139 (185)
Q Consensus        79 ------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~  139 (185)
                                        ++++++.+++.+..++++.+||+|||||++|||++ .+|+++||||||+|+|+.....+.+.
T Consensus        94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~  173 (354)
T TIGR02142        94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY  173 (354)
T ss_pred             HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence                              34567778888889999999999999999999999 99999999999777776665555554


Q ss_pred             HHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         140 IARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       140 il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      + +.++++.+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus       174 L-~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  218 (354)
T TIGR02142       174 L-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE  218 (354)
T ss_pred             H-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence            4 56655358999999999 77889999999999999998877643

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=3.2e-37  Score=245.67  Aligned_cols=158  Identities=14%  Similarity=0.061  Sum_probs=124.1

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHHH----------------------HHhhCceecCCCC--C---c
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSVF----------------------LAQIGCFVPCDSA--T---I   76 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~----------------------~~~~g~~v~~~~~--~---~   76 (185)
                      +++|+||++++|++++|+||||||||||+|+| |....                      ...++ |+||++.  .   +
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA-TIMQNPRTAFNPLF   79 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeE-EEecCchhhcCccc
Confidence            47899999999999999999999999999999 33211                      12344 8888752  1   1


Q ss_pred             ch---------------------hhHHHhhcCcc---cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297          77 SV---------------------VDQIFTRVGAA---DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF  131 (185)
Q Consensus        77 ~~---------------------~~~~l~~~~l~---~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~  131 (185)
                      ++                     +.++++.+++.   +..++++.+||+|||||++||+++ .+|+++||||||+|+|..
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~  159 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV  159 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence            21                     23455666776   457889999999999999999999 999999999997777665


Q ss_pred             ChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         132 DGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       132 d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|++...+++++
T Consensus       160 ~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  212 (230)
T TIGR02770       160 NQARVLKLL-RELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKE  212 (230)
T ss_pred             HHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            555555544 55554348899999999 77888999999999999998876643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-37  Score=251.28  Aligned_cols=177  Identities=15%  Similarity=0.093  Sum_probs=138.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------------HHHHH-----------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------------GVSVF-----------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------------G~i~~-----------   61 (185)
                      ++++|+.-.|... ++...+++||||++++||+++|+|.+||||||+.+.|             |.|.+           
T Consensus         2 L~v~nL~v~f~~~-~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           2 LEVKNLSVSFPTD-AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             ceEeeeEEEEecC-CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            5677776544332 2335699999999999999999999999999999999             22211           


Q ss_pred             -----HHhhCceecCCCC-Ccc---------------------------hhhHHHhhcCccc---ccccCcCccHHHHHH
Q psy5297          62 -----LAQIGCFVPCDSA-TIS---------------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKE  105 (185)
Q Consensus        62 -----~~~~g~~v~~~~~-~~~---------------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~q  105 (185)
                           +++-.+|+||++. .+.                           .+.++++.+++.+   .++.++.+|||||+|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                 1222349999871 111                           1345667778864   568999999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |+.||.++ .+|++||.||||+++|..-...+.++ ++.++++.|.++|++||| .-++++|||+.+|..|++++.|+.+
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~L-l~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~  239 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDL-LKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE  239 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence            99999999 99999999999666655555555453 477777689999999999 7788999999999999999999876


Q ss_pred             C
Q psy5297         184 N  184 (185)
Q Consensus       184 ~  184 (185)
                      +
T Consensus       240 ~  240 (316)
T COG0444         240 E  240 (316)
T ss_pred             H
Confidence            5

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-37  Score=276.80  Aligned_cols=178  Identities=11%  Similarity=0.071  Sum_probs=136.8

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------   61 (185)
                      ++.+++++++..|-. .++...+++|+||++++|++++|+||||||||||+|+|        |.|.+             
T Consensus        10 ~~~l~v~~l~~~y~~-~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~   88 (623)
T PRK10261         10 RDVLAVENLNIAFMQ-EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI   88 (623)
T ss_pred             CceEEEeceEEEecC-CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence            346777777655421 11235799999999999999999999999999999999        33211             


Q ss_pred             -------------H-HhhCceecCCC-----CCcch----------------------hhHHHhhcCccc---ccccCcC
Q psy5297          62 -------------L-AQIGCFVPCDS-----ATISV----------------------VDQIFTRVGAAD---SQYRGIS   97 (185)
Q Consensus        62 -------------~-~~~g~~v~~~~-----~~~~~----------------------~~~~l~~~~l~~---~~~~~~~   97 (185)
                                   + ..++ |+||++     ..+++                      +.++++.+++.+   .+++++.
T Consensus        89 ~~~~~~~~~~~~~r~~~ig-~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~  167 (623)
T PRK10261         89 ELSEQSAAQMRHVRGADMA-MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH  167 (623)
T ss_pred             ccccCCHHHHHHHhCCCEE-EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence                         1 1345 999975     11221                      234566778853   4789999


Q ss_pred             ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297          98 TFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus        98 ~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      +||+|||||++||+++ .+|++|||||||+++|+.....+.+. ++.++++.|.|||++||+ .++.++|||+++|++|+
T Consensus       168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~  246 (623)
T PRK10261        168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE  246 (623)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence            9999999999999999 99999999999777666665556554 467765458999999999 78889999999999999


Q ss_pred             EEEEeccC
Q psy5297         176 ESKYLYHT  183 (185)
Q Consensus       176 i~~~~~~~  183 (185)
                      ++..++++
T Consensus       247 i~~~g~~~  254 (623)
T PRK10261        247 AVETGSVE  254 (623)
T ss_pred             ecccCCHH
Confidence            98877654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-37  Score=275.95  Aligned_cols=160  Identities=17%  Similarity=0.106  Sum_probs=128.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------HHhhCceecCCCC--C-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------LAQIGCFVPCDSA--T-   75 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------~~~~g~~v~~~~~--~-   75 (185)
                      ..+++|+||++++|++++|+||||||||||+|+|        |.|.+                ..+++ |+||++.  . 
T Consensus       337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~-~v~Q~~~~~l~  415 (623)
T PRK10261        337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ-FIFQDPYASLD  415 (623)
T ss_pred             eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeE-EEecCchhhcC
Confidence            4699999999999999999999999999999999        33322                12355 9999851  1 


Q ss_pred             --cc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297          76 --IS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTS  129 (185)
Q Consensus        76 --~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~  129 (185)
                        ++                      .+.++++.+++. +..++++.+||+|||||++||+++ .+|++|||||||+++|
T Consensus       416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD  495 (623)
T PRK10261        416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD  495 (623)
T ss_pred             CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence              11                      123456778885 567899999999999999999999 9999999999977766


Q ss_pred             cCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         130 TFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       130 ~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ......+.+.+ ..++++.|.|||++||| ..+..+||++++|++|++++.+++++
T Consensus       496 ~~~~~~i~~ll-~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~  550 (623)
T PRK10261        496 VSIRGQIINLL-LDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA  550 (623)
T ss_pred             HHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            66655555544 66655458999999999 77889999999999999998887654

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=243.97  Aligned_cols=169  Identities=14%  Similarity=0.142  Sum_probs=129.2

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-----------------------HH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-----------------------VF   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-----------------------~~   61 (185)
                      +++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+| |..                       .+
T Consensus         3 ~~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~   77 (246)
T PRK14269          3 AKTTNLNLFY-----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL   77 (246)
T ss_pred             eeeeeeEEEE-----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence            4566665544     235799999999999999999999999999999999 321                       11


Q ss_pred             HHhhCceecCCCCCc--ch-----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHHHHHh
Q psy5297          62 LAQIGCFVPCDSATI--SV-----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~--~~-----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                      ...++ |+||++..+  ++                       +.++++.+++.    +..++++.+||+||+||+++||+
T Consensus        78 ~~~i~-~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  156 (246)
T PRK14269         78 RKNVG-MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA  156 (246)
T ss_pred             hhhEE-EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence            23455 899886221  11                       22445666774    34577889999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      + .+|+++|||||++|+|+.....+.+.+ ..+.+  +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus       157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~  226 (246)
T PRK14269        157 LAIKPKLLLLDEPTSALDPISSGVIEELL-KELSH--NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK  226 (246)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhC--CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence            9 999999999997776665544444433 45543  7899999999 7788999999999999999887654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=244.73  Aligned_cols=171  Identities=16%  Similarity=0.183  Sum_probs=129.8

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      +.+++++++..+     +.+.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus         3 ~~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~   77 (251)
T PRK14251          3 NIISAKDVHLSY-----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK   77 (251)
T ss_pred             ceEEEEeeEEEE-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence            457787777654     225799999999999999999999999999999999 4321                      


Q ss_pred             -----HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETA  107 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~  107 (185)
                           +...++ |+||++..+  ++                      +.++++.+++.    +..++++.+||+||+||+
T Consensus        78 ~~~~~~~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~  156 (251)
T PRK14251         78 MDLVELRKEVG-MVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI  156 (251)
T ss_pred             chHHHhhccEE-EEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH
Confidence                 011234 888875322  21                      12334455653    345788899999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +|||++ .+|+++|||||++|+|+.....+...+ +.+.+  +.|+|++||+ .++.++||++++|++|++...++++
T Consensus       157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~  231 (251)
T PRK14251        157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETL-MELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE  231 (251)
T ss_pred             HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHH-HHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence            999999 999999999997776665544444433 55543  6899999999 7788999999999999999887654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=9.9e-37  Score=268.37  Aligned_cols=159  Identities=13%  Similarity=0.067  Sum_probs=126.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------HH-------------------------------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------VF-------------------------------   61 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------~~-------------------------------   61 (185)
                      +.+++|+||++++|++++|+||||||||||+|+| |.+         .+                               
T Consensus        13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~   92 (520)
T TIGR03269        13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE   92 (520)
T ss_pred             eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence            5799999999999999999999999999999999 432         11                               


Q ss_pred             ---------------HHhhCceecCC-CCC---cc---------------------hhhHHHhhcCcccccccCcCccHH
Q psy5297          62 ---------------LAQIGCFVPCD-SAT---IS---------------------VVDQIFTRVGAADSQYRGISTFMM  101 (185)
Q Consensus        62 ---------------~~~~g~~v~~~-~~~---~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~  101 (185)
                                     ...++ |+||+ ...   .+                     .+.++++.+++++..++++++||+
T Consensus        93 ~~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg  171 (520)
T TIGR03269        93 EVDFWNLSDKLRRRIRKRIA-IMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG  171 (520)
T ss_pred             chhhhccCHHHHHHhhhcEE-EEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence                           11234 88886 211   12                     133467778888888999999999


Q ss_pred             HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      |||||++||+++ .+|+++||||||+++|+.....+.+.+ +.+.++.|.|||++||+ ..+.++||++++|++|+++..
T Consensus       172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~  250 (520)
T TIGR03269       172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL-EEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE  250 (520)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeee
Confidence            999999999999 999999999997776666555555534 66654358999999999 777889999999999999887


Q ss_pred             eccC
Q psy5297         180 LYHT  183 (185)
Q Consensus       180 ~~~~  183 (185)
                      ++++
T Consensus       251 g~~~  254 (520)
T TIGR03269       251 GTPD  254 (520)
T ss_pred             cCHH
Confidence            7654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.9e-37  Score=244.47  Aligned_cols=160  Identities=20%  Similarity=0.164  Sum_probs=127.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S---   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~---   77 (185)
                      +.+++|+||++.+|++++|+||||||||||+++|        |.+.+           ...++ |+||.+..+   +   
T Consensus        13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~e   91 (237)
T TIGR00968        13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG-FVFQHYALFKHLTVRD   91 (237)
T ss_pred             eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEE-EEecChhhccCCcHHH
Confidence            5799999999999999999999999999999999        33322           12344 888876222   1   


Q ss_pred             ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                                        .+.++++.+++.+..++.+.+||+||+||+++|+++ .+|+++|||||++|+|......+.+
T Consensus        92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~  171 (237)
T TIGR00968        92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS  171 (237)
T ss_pred             HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                              124556777887778899999999999999999999 9999999999966666655554544


Q ss_pred             HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+ ..++++.+.|+|++||+ .++.++||+++++++|+++..++.++
T Consensus       172 ~l-~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  217 (237)
T TIGR00968       172 WL-RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDE  217 (237)
T ss_pred             HH-HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHH
Confidence            33 55554348999999999 77789999999999999998877543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=8.9e-37  Score=246.47  Aligned_cols=172  Identities=12%  Similarity=0.046  Sum_probs=132.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------H-----------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------F-----------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------~-----------   61 (185)
                      .++++++...+ .     +.+++|+||++++|++++|+||||||||||+|+| |...           +           
T Consensus         4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   77 (254)
T PRK10418          4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR   77 (254)
T ss_pred             EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence            47777777655 1     4699999999999999999999999999999999 3221           1           


Q ss_pred             HHhhCceecCCCC-Cc----c-------------------hhhHHHhhcCccc---ccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 LAQIGCFVPCDSA-TI----S-------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 ~~~~g~~v~~~~~-~~----~-------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      ...++ |+||++. .+    +                   .+.++++.+++.+   ..++++.+||+||+||++||+++ 
T Consensus        78 ~~~i~-~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~  156 (254)
T PRK10418         78 GRKIA-TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL  156 (254)
T ss_pred             cceEE-EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence            12244 8898852 11    1                   1233556677765   46888999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++|||||++|+|+.....+...+ +.+.++.|.|||++||+ .++.++||++++|++|++...+++++
T Consensus       157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L-~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  227 (254)
T PRK10418        157 CEAPFIIADEPTTDLDVVAQARILDLL-ESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET  227 (254)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            999999999997777665555454544 55554358999999999 77788999999999999998877543

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-36  Score=248.09  Aligned_cols=175  Identities=21%  Similarity=0.129  Sum_probs=135.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~   63 (185)
                      .++++++...|-.  .....+++|+||++++|++++|+||||||||||+++|        |.|.+             ..
T Consensus         4 ~l~~~~l~~~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   81 (277)
T PRK13642          4 ILEVENLVFKYEK--ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR   81 (277)
T ss_pred             eEEEEEEEEEcCC--CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence            5777887665421  1124599999999999999999999999999999999        33321             23


Q ss_pred             hhCceecCCCC--C--cch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          64 QIGCFVPCDSA--T--ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        64 ~~g~~v~~~~~--~--~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      .++ |+||++.  .  .++                     ++.+++.+++.+..++++.+||+||+||++||+++ .+|+
T Consensus        82 ~i~-~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~  160 (277)
T PRK13642         82 KIG-MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE  160 (277)
T ss_pred             ceE-EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            355 8898751  1  121                     23455667887788899999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++|||||++|+|+.....+...+ ..+.++.|.|+|++||+ .++ ..||++++|++|+++..+++++
T Consensus       161 llllDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tiil~sH~~~~~-~~~d~i~~l~~G~i~~~g~~~~  226 (277)
T PRK13642        161 IIILDESTSMLDPTGRQEIMRVI-HEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSE  226 (277)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEeCCHHH
Confidence            99999997777776666665544 56665358999999999 555 4699999999999998887654

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=243.94  Aligned_cols=172  Identities=19%  Similarity=0.187  Sum_probs=130.8

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      ..++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus         3 ~~l~~~nl~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~   77 (252)
T PRK14256          3 NKVKLEQLNVHF-----GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG   77 (252)
T ss_pred             cEEEEEEEEEEe-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence            347777776544     135799999999999999999999999999999999 4321                      


Q ss_pred             -----HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKET  106 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~  106 (185)
                           +...++ |+||++..+   ++                      +.++++.+++.    +..++.+.+||+||+||
T Consensus        78 ~~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  156 (252)
T PRK14256         78 VDPVSIRRRVG-MVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR  156 (252)
T ss_pred             CChHHhhccEE-EEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence                 011234 888875222   21                      12334455653    24567889999999999


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||+++ .+|+++|||||++|+|+.....+.+. ++.+.+  +.|||++||+ .++.++||++++|++|++...+++++
T Consensus       157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~-l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  233 (252)
T PRK14256        157 LCIARTIAVKPEVILMDEPASALDPISTLKIEEL-IEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK  233 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence            9999999 99999999999777766665555554 466654  5799999999 77889999999999999998887543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=262.84  Aligned_cols=183  Identities=16%  Similarity=0.124  Sum_probs=145.6

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH------------HHHHH-------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI------------GVSVF-------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i------------G~i~~-------   61 (185)
                      |..+.++++|+...|-.. .+...+++||||++.+||++||+|.+||||||+.++|            |.|.+       
T Consensus         1 ~~~~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~   79 (539)
T COG1123           1 MMSPLLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG   79 (539)
T ss_pred             CCCceEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence            456689999998777654 3335799999999999999999999999999999999            33311       


Q ss_pred             ---------HHhhCceecCCCC-Cc----c----------------------hhhHHHhhcCccccccc--CcCccHHHH
Q psy5297          62 ---------LAQIGCFVPCDSA-TI----S----------------------VVDQIFTRVGAADSQYR--GISTFMMEM  103 (185)
Q Consensus        62 ---------~~~~g~~v~~~~~-~~----~----------------------~~~~~l~~~~l~~~~~~--~~~~lS~g~  103 (185)
                               ++...+|+||+++ .+    +                      .+.++++.+++.+...+  ++.+|||||
T Consensus        80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~  159 (539)
T COG1123          80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM  159 (539)
T ss_pred             CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence                     1222349999972 11    1                      24567788888776654  999999999


Q ss_pred             HHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         104 KETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       104 ~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      |||+.||+++ .+|++||+||||.++|......+.+. ++.+.++.|.++|++||| .-++++|||+++|++|++++.|+
T Consensus       160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l-lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~  238 (539)
T COG1123         160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP  238 (539)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH-HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence            9999999999 99999999999666655555555554 477776689999999999 66788999999999999999998


Q ss_pred             cCCC
Q psy5297         182 HTNV  185 (185)
Q Consensus       182 ~~~~  185 (185)
                      ++++
T Consensus       239 ~~~i  242 (539)
T COG1123         239 TEEI  242 (539)
T ss_pred             HHHH
Confidence            7653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.1e-36  Score=268.65  Aligned_cols=180  Identities=18%  Similarity=0.100  Sum_probs=137.7

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------H------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------F------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------~------   61 (185)
                      |+++.++++++...|-. .++.+.+++|+||++++||+++|+||||||||||+|+| |.+.            +      
T Consensus         1 ~~~~~l~~~~l~~~~~~-~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   79 (529)
T PRK15134          1 MTQPLLAIENLSVAFRQ-QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL   79 (529)
T ss_pred             CCCceEEEeceEEEecC-CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence            56677888888765521 01125799999999999999999999999999999999 3221            0      


Q ss_pred             ----------H-HhhCceecCCCC--Cc---c----------------------hhhHHHhhcCccc---ccccCcCccH
Q psy5297          62 ----------L-AQIGCFVPCDSA--TI---S----------------------VVDQIFTRVGAAD---SQYRGISTFM  100 (185)
Q Consensus        62 ----------~-~~~g~~v~~~~~--~~---~----------------------~~~~~l~~~~l~~---~~~~~~~~lS  100 (185)
                                + .+++ |+||++.  ..   +                      .++++++.+++.+   ..++++++||
T Consensus        80 ~~~~~~~~~~~~~~ig-~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LS  158 (529)
T PRK15134         80 HASEQTLRGVRGNKIA-MIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLS  158 (529)
T ss_pred             cCCHHHHHHHhcCceE-EEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccC
Confidence                      1 1345 9999752  11   1                      1234566777764   3588999999


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      +|||||++||+++ .+|+++||||||+++|+.....+.+. +..++++.+.|||++||+ .++..+||++++|++|+++.
T Consensus       159 gGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~  237 (529)
T PRK15134        159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE  237 (529)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence            9999999999999 99999999999777666665555554 366655358999999999 77888999999999999998


Q ss_pred             EeccC
Q psy5297         179 YLYHT  183 (185)
Q Consensus       179 ~~~~~  183 (185)
                      .+.++
T Consensus       238 ~g~~~  242 (529)
T PRK15134        238 QNRAA  242 (529)
T ss_pred             eCCHH
Confidence            87654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-36  Score=245.29  Aligned_cols=171  Identities=16%  Similarity=0.182  Sum_probs=128.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus        20 ~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   94 (267)
T PRK14237         20 ALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI   94 (267)
T ss_pred             EEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence            34555554333     236799999999999999999999999999999999 4321                       


Q ss_pred             ----HHHhhCceecCCCCCc--chh----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++..+  ++.                      .++++.+++.    +..++++.+||+||+||++
T Consensus        95 ~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~  173 (267)
T PRK14237         95 NVYEMRKHIG-MVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC  173 (267)
T ss_pred             ChHHHhcceE-EEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence                011244 889876322  221                      1223445553    3467889999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||++ .+|+++|||||++|+|+.....+.+.+ ..+++  +.++|++||+ .++.++||++++|++|+++..+++++
T Consensus       174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  248 (267)
T PRK14237        174 IARAIAVKPDILLMDEPASALDPISTMQLEETM-FELKK--NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN  248 (267)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            99999 999999999997777766655555544 55543  6899999999 77889999999999999998887643

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=1.1e-36  Score=239.90  Aligned_cols=150  Identities=21%  Similarity=0.230  Sum_probs=120.2

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc---ch-
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI---SV-   78 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~---~~-   78 (185)
                      |+||++++ ++++|+||||||||||+|+|        |.+.+                 ...++ |+||++..+   ++ 
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~   93 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG-LVFQQYALFPHLNVR   93 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE-EEecCCccCCCCCHH
Confidence            99999999 99999999999999999999        33211                 22345 889886322   21 


Q ss_pred             ------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHH
Q psy5297          79 ------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACS  139 (185)
Q Consensus        79 ------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~  139 (185)
                                        +.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.+.
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  173 (214)
T cd03297          94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE  173 (214)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                              33456777888778899999999999999999999 99999999999777766665555554


Q ss_pred             HHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297         140 IARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       140 il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      + ..++++.+.|+|++||+ .++..+||++++|++|+++..|
T Consensus       174 l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         174 L-KQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             H-HHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            4 55554348999999999 7788999999999999997653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=244.45  Aligned_cols=170  Identities=16%  Similarity=0.141  Sum_probs=129.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus         4 ~l~i~~v~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~   78 (258)
T PRK14241          4 RIDVKDLNIYY-----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV   78 (258)
T ss_pred             cEEEeeEEEEE-----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence            56777776554     225799999999999999999999999999999999 4321                       


Q ss_pred             ----HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETA  107 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~  107 (185)
                          +...++ |+||+...+   ++                      +.++++.+++.    +..++++.+||+||+||+
T Consensus        79 ~~~~~~~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv  157 (258)
T PRK14241         79 DPVAVRRTIG-MVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL  157 (258)
T ss_pred             ChHHHhcceE-EEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence                011234 888875221   21                      12334455653    456788999999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee------eeeEEEE
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR------NVHESKY  179 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~------~g~i~~~  179 (185)
                      +||+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|+      +|+++..
T Consensus       158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~  234 (258)
T PRK14241        158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI-NELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI  234 (258)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence            999999 999999999997777666655555544 55543  5899999999 77889999999996      7999988


Q ss_pred             eccC
Q psy5297         180 LYHT  183 (185)
Q Consensus       180 ~~~~  183 (185)
                      ++++
T Consensus       235 ~~~~  238 (258)
T PRK14241        235 DDTE  238 (258)
T ss_pred             CCHH
Confidence            7754

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-36  Score=242.42  Aligned_cols=174  Identities=17%  Similarity=0.185  Sum_probs=129.8

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-------------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-------------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-------------------   60 (185)
                      |++---+++++...+     +.+.+++|+||++++|++++|+||||||||||+|+| |...                   
T Consensus         1 ~~~~~~~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   75 (251)
T PRK14244          1 MSEIHASVKNLNLWY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY   75 (251)
T ss_pred             CCceEEEeeeEEEEE-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence            333334555554433     235799999999999999999999999999999999 4321                   


Q ss_pred             --------HHHhhCceecCCCCCc--ch-----------------------hhHHHhhcCccc----ccccCcCccHHHH
Q psy5297          61 --------FLAQIGCFVPCDSATI--SV-----------------------VDQIFTRVGAAD----SQYRGISTFMMEM  103 (185)
Q Consensus        61 --------~~~~~g~~v~~~~~~~--~~-----------------------~~~~l~~~~l~~----~~~~~~~~lS~g~  103 (185)
                              +...++ |+||++..+  ++                       +.++++.+++.+    ..++.+.+||+||
T Consensus        76 ~~~~~~~~~~~~i~-~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq  154 (251)
T PRK14244         76 SVDTNVVLLRAKVG-MVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQ  154 (251)
T ss_pred             hcccchHHHhhhEE-EEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHH
Confidence                    112344 899876322  11                       123455666643    3567889999999


Q ss_pred             HHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         104 KETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       104 ~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      +||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+.  .+.|||++||+ .++.++||++++|++|+++..++
T Consensus       155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~  231 (251)
T PRK14244        155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI-QELK--KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT  231 (251)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHh--cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCC
Confidence            9999999999 999999999997777666555554433 5554  37999999999 77788999999999999998776


Q ss_pred             cC
Q psy5297         182 HT  183 (185)
Q Consensus       182 ~~  183 (185)
                      ++
T Consensus       232 ~~  233 (251)
T PRK14244        232 TQ  233 (251)
T ss_pred             HH
Confidence            54

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-36  Score=247.53  Aligned_cols=157  Identities=17%  Similarity=0.145  Sum_probs=121.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------------HHHhhCceecCCCC
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------------FLAQIGCFVPCDSA   74 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------------~~~~~g~~v~~~~~   74 (185)
                      +.+++|+||++++|++++|+||||||||||+|+| |...                           +...++ |+||++.
T Consensus        52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~  130 (286)
T PRK14275         52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIG-MVFQKPN  130 (286)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEE-EECCCCC
Confidence            5699999999999999999999999999999999 5321                           012344 8898863


Q ss_pred             Cc--ch----------------------hhHHHhhcCc----ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          75 TI--SV----------------------VDQIFTRVGA----ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        75 ~~--~~----------------------~~~~l~~~~l----~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      .+  ++                      +.++++.+++    .+..++++.+||+||+||++||+++ .+|+++|||||+
T Consensus       131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt  210 (286)
T PRK14275        131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT  210 (286)
T ss_pred             CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            22  11                      1233444554    3456788999999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +|+|+.....+.+.+ +.+++  +.|||++||+ .++.++||++++|++|++...++++
T Consensus       211 ~gLD~~~~~~l~~~L-~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~  266 (286)
T PRK14275        211 SALDPKATAKIEDLI-QELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTA  266 (286)
T ss_pred             ccCCHHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            766665555444433 55543  5899999999 7778899999999999999887754

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.5e-36  Score=247.04  Aligned_cols=178  Identities=17%  Similarity=0.114  Sum_probs=135.2

Q ss_pred             eEEEcccCCceeee--cC--CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297           5 TLVLNQCRHPIVEL--QG--GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~--~~--~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------   60 (185)
                      .++++++...+-..  .+  .++.+++|+||++++|++++|+||||||||||+|+|        |.+.            
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~   82 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA   82 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence            56777776544210  00  136799999999999999999999999999999999        3221            


Q ss_pred             ----HHHhhCceecCCCC--C---cc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSA--T---IS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~--~---~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++.  .   .+                      .++++++.+++. +..++++.+||+||+||++
T Consensus        83 ~~~~~~~~i~-~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~  161 (268)
T PRK10419         83 QRKAFRRDIQ-MVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC  161 (268)
T ss_pred             HHHHHHhcEE-EEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence                123345 8888751  1   11                      133456667775 5678899999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||+++ .+|+++|||||++|+|......+.+.+ +.++++.+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l-~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~  238 (268)
T PRK10419        162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLL-KKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD  238 (268)
T ss_pred             HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH-HHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhh
Confidence            99999 999999999997776665555555544 55554358999999999 77788999999999999998887654

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=9.2e-37  Score=245.74  Aligned_cols=156  Identities=12%  Similarity=0.115  Sum_probs=125.5

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH-------------HHhhCceecCCCCC---cc----
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF-------------LAQIGCFVPCDSAT---IS----   77 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~-------------~~~~g~~v~~~~~~---~~----   77 (185)
                      +++|+||++++|++++|+||||||||||+|+|       |.+.+             ...++ |+||++..   .+    
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~tv~~n   89 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRA-YLSQQQTPPFAMPVFQY   89 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheE-EecccCccCCCccHHHH
Confidence            79999999999999999999999999999999       33221             12345 88887521   11    


Q ss_pred             ----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C-------CCeEEEEeCCCCCCCcCCh
Q psy5297          78 ----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T-------ENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        78 ----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~-------~p~llllDEP~~g~~~~d~  133 (185)
                                      .++++++.+++.+..++++.+||+|||||++||+++ .       +|+++|||||++|+|+...
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~  169 (248)
T PRK03695         90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ  169 (248)
T ss_pred             HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence                            134567778888888999999999999999999999 6       6799999999777766655


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ..+.+.+ ..+++ .+.|+|++||+ .++..+||++++|++|+++..++.+
T Consensus       170 ~~l~~~L-~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  218 (248)
T PRK03695        170 AALDRLL-SELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD  218 (248)
T ss_pred             HHHHHHH-HHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            5555443 56655 58999999999 7789999999999999999887654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-36  Score=247.01  Aligned_cols=177  Identities=13%  Similarity=0.122  Sum_probs=132.9

Q ss_pred             eEEEcccCCceeeec---------------CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH
Q psy5297           5 TLVLNQCRHPIVELQ---------------GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~---------------~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~   61 (185)
                      .+.++|+++.|-..+               +..+.+++|+||++++|++++|+||||||||||+++|        |.+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            467777777653321               1334699999999999999999999999999999999        33333


Q ss_pred             HHhhCceecCCCC---Ccc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSA---TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~---~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ..+.. ++++...   .++                     .+..+++.+++.+..++++.+||+||+||+++|+++ .+|
T Consensus        84 ~g~~~-~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p  162 (264)
T PRK13546         84 NGEVS-VIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNP  162 (264)
T ss_pred             CCEEe-EEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCC
Confidence            22222 3333221   111                     122345566788888899999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++|||||++|+|+.....+.+.+ ..+++ .+.|+|++||+ .++.++||++++|++|++...++.++
T Consensus       163 ~iLlLDEPt~gLD~~~~~~l~~~L-~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~  229 (264)
T PRK13546        163 DILVIDEALSVGDQTFAQKCLDKI-YEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDD  229 (264)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHH-HHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHH
Confidence            999999997776665545555543 55555 58999999999 77889999999999999998877543

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-36  Score=244.75  Aligned_cols=172  Identities=15%  Similarity=0.186  Sum_probs=128.2

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      +.++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus        12 ~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~   86 (269)
T PRK14259         12 IIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR   86 (269)
T ss_pred             ceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            456666665444     235799999999999999999999999999999999 4321                      


Q ss_pred             -----HHHhhCceecCCCCCc--ch--------------------hhHHHhhcCc----ccccccCcCccHHHHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSATI--SV--------------------VDQIFTRVGA----ADSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~~--~~--------------------~~~~l~~~~l----~~~~~~~~~~lS~g~~q~~~i  109 (185)
                           +...++ |+||++..+  ++                    +.++++.+++    .+..++++.+||+|||||++|
T Consensus        87 ~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l  165 (269)
T PRK14259         87 VDPVEVRRRIG-MVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI  165 (269)
T ss_pred             CCHHHHhhceE-EEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence                 112345 889876322  21                    1223444444    234678889999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee-----------eeE
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN-----------VHE  176 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~-----------g~i  176 (185)
                      |+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|||++||+ .++..+||++++|++           |++
T Consensus       166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~  242 (269)
T PRK14259        166 ARTIAIEPEVILMDEPCSALDPISTLKIEETM-HELKK--NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL  242 (269)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence            9999 999999999997776665555554433 55543  6899999999 788899999999996           567


Q ss_pred             EEEeccCC
Q psy5297         177 SKYLYHTN  184 (185)
Q Consensus       177 ~~~~~~~~  184 (185)
                      ++.+++++
T Consensus       243 ~~~~~~~~  250 (269)
T PRK14259        243 VEFNETKK  250 (269)
T ss_pred             EEeCCHHH
Confidence            88776543

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-36  Score=241.49  Aligned_cols=173  Identities=13%  Similarity=0.147  Sum_probs=131.1

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------   60 (185)
                      ++.++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                     
T Consensus         2 ~~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~   76 (251)
T PRK14270          2 KIKMESKNLNLWY-----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK   76 (251)
T ss_pred             ccEEEEEEeEEEE-----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence            3556777776544     235799999999999999999999999999999999 4321                     


Q ss_pred             ------HHHhhCceecCCCCCc--chh----------------------hHHHhhcCcc----cccccCcCccHHHHHHH
Q psy5297          61 ------FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKET  106 (185)
Q Consensus        61 ------~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~  106 (185)
                            +...++ |+||++..+  ++.                      .++++.+++.    +..++++.+||+||+||
T Consensus        77 ~~~~~~~~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  155 (251)
T PRK14270         77 DVDVVELRKRVG-MVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR  155 (251)
T ss_pred             cccHHHHHhheE-EEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence                  012244 888876322  211                      1234455542    34678899999999999


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L-~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  232 (251)
T PRK14270        156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM-VELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK  232 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence            9999999 999999999997777666655554533 55554  5899999999 77889999999999999998877643

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-36  Score=242.53  Aligned_cols=170  Identities=15%  Similarity=0.176  Sum_probs=128.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .+++++++..+     +.+.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus         3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~   77 (250)
T PRK14240          3 KISVKDLDLFY-----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI   77 (250)
T ss_pred             eEEEEEEEEEE-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            46777776655     125699999999999999999999999999999999 4211                       


Q ss_pred             ----HHHhhCceecCCCCC--cchhhH----------------------HHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSAT--ISVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~--~~~~~~----------------------~l~~~~l~----~~~~~~~~~lS~g~~q~~~  108 (185)
                          ++..++ |+||++..  .++.++                      +++.+++.    +..++++.+||+||+||++
T Consensus        78 ~~~~~~~~i~-~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~  156 (250)
T PRK14240         78 DVNQLRKRVG-MVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLC  156 (250)
T ss_pred             chHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHH
Confidence                112344 88887632  222222                      22333332    3457788999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |||++ .+|+++|||||++|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..++++
T Consensus       157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~  230 (250)
T PRK14240        157 IARALAVEPEVLLMDEPTSALDPISTLKIEELI-QELKK--DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTV  230 (250)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc--CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            99999 999999999997776666555554433 55543  6899999999 7788999999999999999887654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=4.6e-36  Score=237.13  Aligned_cols=167  Identities=13%  Similarity=0.135  Sum_probs=124.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~   64 (185)
                      ++++++...|   .++.+.+++|+||++++|++++|+||||||||||+++|        |.+.+             ...
T Consensus         3 l~~~~l~~~~---~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   79 (220)
T cd03245           3 IEFRNVSFSY---PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN   79 (220)
T ss_pred             EEEEEEEEEc---CCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence            5566665443   11225699999999999999999999999999999999        33211             223


Q ss_pred             hCceecCCCCCc--ch---------------hhHHHhhcCcccccccC-----------cCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATI--SV---------------VDQIFTRVGAADSQYRG-----------ISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~--~~---------------~~~~l~~~~l~~~~~~~-----------~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..+  ++               +.++++.+++.+..++.           +.+||+||+||++||+++ .+
T Consensus        80 i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~  158 (220)
T cd03245          80 IG-YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND  158 (220)
T ss_pred             EE-EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            45 999886322  22               22344556666555543           469999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEE
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      |+++||||||+|+|+.....+.+.+ +.+++  +.|||++||+.+..++||+++++++|+++..
T Consensus       159 p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~  219 (220)
T cd03245         159 PPILLLDEPTSAMDMNSEERLKERL-RQLLG--DKTLIIITHRPSLLDLVDRIIVMDSGRIVAD  219 (220)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHH-HHhcC--CCEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence            9999999997777776666555544 55554  3899999999444589999999999998754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.2e-36  Score=233.36  Aligned_cols=145  Identities=18%  Similarity=0.126  Sum_probs=114.5

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH----HHHHHHHh--------hCceecCCCCCcchhhHHHhhcCcc
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI----GVSVFLAQ--------IGCFVPCDSATISVVDQIFTRVGAA   89 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i----G~i~~~~~--------~g~~v~~~~~~~~~~~~~l~~~~l~   89 (185)
                      ..++++|+||++++|++++|+||||||||||||++    |.+.+...        ++ |++|        .++++.+++.
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~-~~~q--------~~~l~~~~L~   77 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLI-FIDQ--------LQFLIDVGLG   77 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEE-EEhH--------HHHHHHcCCC
Confidence            46799999999999999999999999999999998    33322111        12 3333        4578889987


Q ss_pred             c-ccccCcCccHHHHHHHHHHHHhC-CC--CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          90 D-SQYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        90 ~-~~~~~~~~lS~g~~q~~~ia~~l-~~--p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      + ..++++.+||+||+||+++|+++ .+  |+++|||||++++|+.....+.+.+ +.+.+ .|.|||++||+.+..+.|
T Consensus        78 ~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tvIivSH~~~~~~~~  155 (176)
T cd03238          78 YLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI-KGLID-LGNTVILIEHNLDVLSSA  155 (176)
T ss_pred             ccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHhC
Confidence            6 47899999999999999999999 99  9999999997776666555555544 55554 589999999994445789


Q ss_pred             ccccceeeeeEE
Q psy5297         166 RVIPTFRNVHES  177 (185)
Q Consensus       166 d~~~~l~~g~i~  177 (185)
                      |++++|.+|+..
T Consensus       156 d~i~~l~~g~~~  167 (176)
T cd03238         156 DWIIDFGPGSGK  167 (176)
T ss_pred             CEEEEECCCCCC
Confidence            999999775543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=2.7e-36  Score=241.04  Aligned_cols=157  Identities=13%  Similarity=0.125  Sum_probs=118.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCc--chh
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATI--SVV   79 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~--~~~   79 (185)
                      +++++|+||++++|++++|+||||||||||+|+|        |.|.+             ...++ |+||++..+  ++.
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~   93 (237)
T cd03252          15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG-VVLQENVLFNRSIR   93 (237)
T ss_pred             ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE-EEcCCchhccchHH
Confidence            5699999999999999999999999999999999        32211             23355 999986322  221


Q ss_pred             hHH---------------Hhhc-----------CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          80 DQI---------------FTRV-----------GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        80 ~~~---------------l~~~-----------~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                      +++               ++..           ++....++++.+||+|||||++||+++ .+|+++||||||+|+|+..
T Consensus        94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~  173 (237)
T cd03252          94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES  173 (237)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence            111               1112           223334667899999999999999999 9999999999977776666


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ...+.+.+ ..++  .+.|||++||+ .++ ..||++++|++|+++..+++++
T Consensus       174 ~~~l~~~l-~~~~--~~~tiii~sH~~~~~-~~~d~v~~l~~G~i~~~~~~~~  222 (237)
T cd03252         174 EHAIMRNM-HDIC--AGRTVIIIAHRLSTV-KNADRIIVMEKGRIVEQGSHDE  222 (237)
T ss_pred             HHHHHHHH-HHhc--CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEEcCHHH
Confidence            55555544 5554  38899999999 555 5799999999999998877543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=100.00  E-value=8.4e-36  Score=233.06  Aligned_cols=169  Identities=30%  Similarity=0.511  Sum_probs=145.3

Q ss_pred             EEcccCCceeeecCCceeeeceEEEeeCCc-eeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-CCcchhhHHHh
Q psy5297           7 VLNQCRHPIVELQGGVSYIPNDVYFKSGEV-SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFT   84 (185)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~il~~isl~i~~g-~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-~~~~~~~~~l~   84 (185)
                      ++++++||+++.. .  ..+-++||++++| ++++|+||||||||||||+|+.+.+.++.|.++|... ...+.+++++.
T Consensus         1 ~~~~~~hp~~~~~-~--~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~   77 (200)
T cd03280           1 RLREARHPLLPLQ-G--EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFA   77 (200)
T ss_pred             CCcccCCCEEecc-C--CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEE
Confidence            3789999999853 2  2344566666788 5899999999999999999998888999999999876 45666788888


Q ss_pred             hcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297          85 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus        85 ~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      .++..+..+...++||+||+|+..+++++.+|+++++|||++|+|+.+...+.+.+++.+.+ .+.++|++||+.++.++
T Consensus        78 ~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~l~~~  156 (200)
T cd03280          78 DIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGELKAY  156 (200)
T ss_pred             ecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHHHHHH
Confidence            88888889999999999999999999988999999999999999988877776655677775 58999999999888899


Q ss_pred             hccccceeeeeEEEE
Q psy5297         165 SRVIPTFRNVHESKY  179 (185)
Q Consensus       165 ~d~~~~l~~g~i~~~  179 (185)
                      ||+++.+++|++...
T Consensus       157 ~d~~~~l~~g~l~~~  171 (200)
T cd03280         157 AYKREGVENASMEFD  171 (200)
T ss_pred             HhcCCCeEEEEEEEe
Confidence            999999999999766

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=1.3e-36  Score=241.46  Aligned_cols=158  Identities=20%  Similarity=0.153  Sum_probs=121.3

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHh------hC-ceecCCC-----------C
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQ------IG-CFVPCDS-----------A   74 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~------~g-~~v~~~~-----------~   74 (185)
                      +.+.+++|+||++++|++++|+||||||||||+|+|        |.+.+..+      .+ .+.|...           .
T Consensus        33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~  112 (224)
T cd03220          33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLL  112 (224)
T ss_pred             CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHc
Confidence            346799999999999999999999999999999999        33322111      11 0222111           0


Q ss_pred             Ccc------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc
Q psy5297          75 TIS------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASN  147 (185)
Q Consensus        75 ~~~------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~  147 (185)
                      ...      .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+.+ 
T Consensus       113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l-~~~~~-  190 (224)
T cd03220         113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL-RELLK-  190 (224)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-
Confidence            000      234556777888888999999999999999999999 999999999997777766655555544 56655 


Q ss_pred             CCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297         148 RQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       148 ~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      .+.|||++||+ .++..+||+++++++|+++..|
T Consensus       191 ~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         191 QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            48899999999 7788899999999999987643

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=8.8e-37  Score=269.22  Aligned_cols=160  Identities=19%  Similarity=0.176  Sum_probs=127.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH----------------HHhhCceecCCCC--C--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF----------------LAQIGCFVPCDSA--T--   75 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~----------------~~~~g~~v~~~~~--~--   75 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|       |.|.+                ...++ |+||++.  .  
T Consensus       299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~v~q~~~~~l~~  377 (529)
T PRK15134        299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQ-VVFQDPNSSLNP  377 (529)
T ss_pred             ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceE-EEEeCchhhcCC
Confidence            5699999999999999999999999999999999       33321                12355 9998751  1  


Q ss_pred             -cch-----------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297          76 -ISV-----------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTS  129 (185)
Q Consensus        76 -~~~-----------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~  129 (185)
                       .++                       +.++++.+++. +..++++.+||+|||||++||+++ .+|+++||||||+|+|
T Consensus       378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  457 (529)
T PRK15134        378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD  457 (529)
T ss_pred             cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence             111                       23456677886 467899999999999999999999 9999999999977776


Q ss_pred             cCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         130 TFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       130 ~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|++++.+++++
T Consensus       458 ~~~~~~l~~~l-~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  512 (529)
T PRK15134        458 KTVQAQILALL-KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCER  512 (529)
T ss_pred             HHHHHHHHHHH-HHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHH
Confidence            66655555544 56655358999999999 78889999999999999998876643

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=4.4e-36  Score=238.44  Aligned_cols=172  Identities=18%  Similarity=0.239  Sum_probs=129.1

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------H
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------F   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~   61 (185)
                      ++.+++++++..+     +++.+++|+||++++|++++|+||||||||||+|+|        |.+.             +
T Consensus         5 ~~~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~   79 (225)
T PRK10247          5 SPLLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY   79 (225)
T ss_pred             CceEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence            3457777776544     235799999999999999999999999999999999        3221             1


Q ss_pred             HHhhCceecCCCCCc--c-------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297          62 LAQIGCFVPCDSATI--S-------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSL  118 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~--~-------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l  118 (185)
                      ...++ |+||++..+  +                   .+.++++.+++. ...++++.+||+||+||++||+++ .+|++
T Consensus        80 ~~~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  158 (225)
T PRK10247         80 RQQVS-YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV  158 (225)
T ss_pred             HhccE-EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            22345 888875322  1                   133566777885 467899999999999999999999 99999


Q ss_pred             EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee-eeeEEEEecc
Q psy5297         119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR-NVHESKYLYH  182 (185)
Q Consensus       119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~-~g~i~~~~~~  182 (185)
                      +||||||+|+|+.....+.+.+ ..+.++.+.|+|++||+ .++ ..||++++|+ ++..+.+++.
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tvii~sh~~~~~-~~~d~i~~l~~~~~~~~~~~~  222 (225)
T PRK10247        159 LLLDEITSALDESNKHNVNEII-HRYVREQNIAVLWVTHDKDEI-NHADKVITLQPHAGEMQEARY  222 (225)
T ss_pred             EEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECChHHH-HhCCEEEEEecccchHhhhhh
Confidence            9999997777666555555544 55554358999999999 555 5799999995 4444455543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-36  Score=241.24  Aligned_cols=171  Identities=14%  Similarity=0.168  Sum_probs=129.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .+++++++..+     +.+.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus         3 ~l~~~~l~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~   77 (250)
T PRK14262          3 IIEIENFSAYY-----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL   77 (250)
T ss_pred             eEEEEeeEEEe-----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence            46777776544     235799999999999999999999999999999999 3211                       


Q ss_pred             ----HHHhhCceecCCCCC--cchh----------------------hHHHhhcCccc----ccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSAT--ISVV----------------------DQIFTRVGAAD----SQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~--~~~~----------------------~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++..  .++.                      .++++.+++.+    ..++++.+||+||+||++
T Consensus        78 ~~~~~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~  156 (250)
T PRK14262         78 DVTEYRKKVG-MVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLC  156 (250)
T ss_pred             hHHHhhhhEE-EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHH
Confidence                112344 88887632  2221                      12233445432    357888999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||+++ .+|+++|||||++|+|......+.+.+ ..+++  +.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus       157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  231 (250)
T PRK14262        157 IARALAVEPEVILLDEPTSALDPIATQRIEKLL-EELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE  231 (250)
T ss_pred             HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHH-HHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            99999 999999999997776666555554443 55543  6899999999 67889999999999999998887643

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-36  Score=229.49  Aligned_cols=172  Identities=17%  Similarity=0.158  Sum_probs=140.9

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------   60 (185)
                      +.+.++|+...|     +...+|++||++.++|+++.|+|.+|||||||||||        |.|.               
T Consensus         5 ~~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~   79 (256)
T COG4598           5 NALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ   79 (256)
T ss_pred             cceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCC
Confidence            356666666555     446799999999999999999999999999999999        3332               


Q ss_pred             -----------HHHhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHH
Q psy5297          61 -----------FLAQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMK  104 (185)
Q Consensus        61 -----------~~~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~  104 (185)
                                 ++.+.+ +|||..+..+                         .++.++.++|+.+..+.+|..|||||+
T Consensus        80 l~~ad~~q~~r~Rs~L~-mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ  158 (256)
T COG4598          80 LKPADKRQLQRLRTRLG-MVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ  158 (256)
T ss_pred             eeeCCHHHHHHHHHHhh-HhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence                       234556 8888763322                         356678899999999999999999999


Q ss_pred             HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297         105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      ||++|||++ .+|+++|+|||   |+.+|++-..+.+  ++.+++ .|.|++++||. ..+...+.+++++++|.|.++|
T Consensus       159 QR~aIARaLameP~vmLFDEP---TSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G  234 (256)
T COG4598         159 QRVAIARALAMEPEVMLFDEP---TSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG  234 (256)
T ss_pred             HHHHHHHHHhcCCceEeecCC---cccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence            999999999 99999999999   5555555444432  588887 69999999998 6777899999999999999999


Q ss_pred             ccCCC
Q psy5297         181 YHTNV  185 (185)
Q Consensus       181 ~~~~~  185 (185)
                      +|+++
T Consensus       235 ~P~qv  239 (256)
T COG4598         235 PPEQV  239 (256)
T ss_pred             ChHHH
Confidence            98753

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-36  Score=240.41  Aligned_cols=170  Identities=12%  Similarity=0.098  Sum_probs=128.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .++++++...|     +++.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus         3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~   77 (249)
T PRK14253          3 KFNIENLDLFY-----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID   77 (249)
T ss_pred             eEEEeccEEEE-----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence            56777776544     236799999999999999999999999999999999 4321                       


Q ss_pred             ---HHHhhCceecCCCCCc--chhhH----------------------HHhhcCcc----cccccCcCccHHHHHHHHHH
Q psy5297          61 ---FLAQIGCFVPCDSATI--SVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        61 ---~~~~~g~~v~~~~~~~--~~~~~----------------------~l~~~~l~----~~~~~~~~~lS~g~~q~~~i  109 (185)
                         +...++ |+||++..+  ++.++                      +++.+++.    +..++++.+||+||+||++|
T Consensus        78 ~~~~~~~i~-~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  156 (249)
T PRK14253         78 VADLRIKVG-MVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCI  156 (249)
T ss_pred             hHHHHhhee-EEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHH
Confidence               112344 888886322  22111                      22333432    34567889999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |+++ .+|+++|||||++|+|+.....+.+. ++.+++  +.|||++||+ .++..+||++++|++|+++..++++
T Consensus       157 aral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~  229 (249)
T PRK14253        157 ARTIAMEPDVILMDEPTSALDPIATHKIEEL-MEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ  229 (249)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999 99999999999777766655555553 366654  5899999999 7788999999999999999887654

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-36  Score=246.21  Aligned_cols=172  Identities=16%  Similarity=0.160  Sum_probs=127.2

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------   60 (185)
                      ++.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+| |...                     
T Consensus        37 ~~~l~i~~l~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~  111 (285)
T PRK14254         37 ETVIEARDLNVFY-----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA  111 (285)
T ss_pred             CceEEEEEEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence            3345555554333     235799999999999999999999999999999999 4321                     


Q ss_pred             ------HHHhhCceecCCCCCc--ch--------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297          61 ------FLAQIGCFVPCDSATI--SV--------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ------~~~~~g~~v~~~~~~~--~~--------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~  108 (185)
                            +...++ |+||++..+  ++                    +.++++.+++.    +..++++.+||+|||||++
T Consensus       112 ~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~  190 (285)
T PRK14254        112 DVDPVALRRRIG-MVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC  190 (285)
T ss_pred             ccchHhhhccEE-EEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence                  011234 888876322  21                    12344555653    3467889999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccc-ceeeeeEEEEeccC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIP-TFRNVHESKYLYHT  183 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~-~l~~g~i~~~~~~~  183 (185)
                      ||+++ .+|+++|||||++|+|+.....+.+. ++.+++  +.|+|++||+ .++..+||+++ +|++|+++..++++
T Consensus       191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~-L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~  265 (285)
T PRK14254        191 IARAIAPDPEVILMDEPASALDPVATSKIEDL-IEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD  265 (285)
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence            99999 99999999999777766655555443 356654  4799999999 77788999975 67999998877653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-36  Score=264.67  Aligned_cols=170  Identities=16%  Similarity=0.190  Sum_probs=133.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------   61 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------   61 (185)
                      +.+++++++..|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+              
T Consensus         3 ~~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~   77 (501)
T PRK11288          3 PYLSFDGIGKTF-----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL   77 (501)
T ss_pred             ceEEEeeeEEEE-----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence            456777766544     235799999999999999999999999999999999        43322              


Q ss_pred             HHhhCceecCCCCC---cc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 LAQIGCFVPCDSAT---IS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 ~~~~g~~v~~~~~~---~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      ..+++ |+||.+..   ++                        .+.++++.+++.+..++++++||+|||||++||+++ 
T Consensus        78 ~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~  156 (501)
T PRK11288         78 AAGVA-IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA  156 (501)
T ss_pred             hCCEE-EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence            22355 88887521   11                        123456677887777899999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..++
T Consensus       157 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        157 RNARVIAFDEPTSSLSAREIEQLFRVI-RELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             hCCCEEEEcCCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            999999999997776666555555544 56655 58999999999 77889999999999999987654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-36  Score=263.74  Aligned_cols=176  Identities=16%  Similarity=0.126  Sum_probs=135.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H--------HHHH--------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G--------VSVF--------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G--------~i~~--------------   61 (185)
                      .++++++...|-.  ++++.+++|+||++++|++++|+||||||||||+|+| |        .|.+              
T Consensus       259 ~l~~~~l~~~~~~--~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~  336 (506)
T PRK13549        259 ILEVRNLTAWDPV--NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI  336 (506)
T ss_pred             eEEEecCcccccc--ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence            3555555443310  0124699999999999999999999999999999999 2        2221              


Q ss_pred             HHhhCceecCCCC------Ccc--------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHH
Q psy5297          62 LAQIGCFVPCDSA------TIS--------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        62 ~~~~g~~v~~~~~------~~~--------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~  108 (185)
                      ...++ |+||++.      .++                          .++++++.+++. +..++++.+||+|||||++
T Consensus       337 ~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~  415 (506)
T PRK13549        337 AQGIA-MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV  415 (506)
T ss_pred             HCCCE-EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence            11245 8888731      111                          123456777885 5678999999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      ||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||++++|++|+++..++++++
T Consensus       416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI-NQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH-HHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence            99999 999999999998887777666665544 66766 58999999999 788899999999999999988877653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-36  Score=244.37  Aligned_cols=159  Identities=15%  Similarity=0.130  Sum_probs=122.0

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------------HHHhhCceecCCC
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------------FLAQIGCFVPCDS   73 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------------~~~~~g~~v~~~~   73 (185)
                      ++.+++|+||++++|++++|+||||||||||+|+| |...                           +...++ |+||++
T Consensus        32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~-~v~q~~  110 (274)
T PRK14265         32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVG-MVFQRP  110 (274)
T ss_pred             CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEE-EEccCC
Confidence            35799999999999999999999999999999999 3211                           112344 899886


Q ss_pred             CCc--chhh--------------------HHHhhcCc----ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297          74 ATI--SVVD--------------------QIFTRVGA----ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus        74 ~~~--~~~~--------------------~~l~~~~l----~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~  126 (185)
                      ..+  ++.+                    ++++.+++    .+..++++.+||+||+||++||+++ .+|+++||||||+
T Consensus       111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~  190 (274)
T PRK14265        111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCS  190 (274)
T ss_pred             ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence            322  2222                    12333443    2345788899999999999999999 9999999999977


Q ss_pred             CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee---------eeeEEEEeccCC
Q psy5297         127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR---------NVHESKYLYHTN  184 (185)
Q Consensus       127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~---------~g~i~~~~~~~~  184 (185)
                      |+|+.....+.+.+ ..+++  +.|||++||+ .++.++||++++|+         +|+++..+++++
T Consensus       191 ~LD~~~~~~l~~~L-~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~  255 (274)
T PRK14265        191 ALDPISTRQVEELC-LELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ  255 (274)
T ss_pred             cCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence            76666555555544 55543  6899999999 78889999999997         799998887654

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=232.64  Aligned_cols=173  Identities=18%  Similarity=0.183  Sum_probs=147.3

Q ss_pred             EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------HhhCceecC
Q psy5297           8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------AQIGCFVPC   71 (185)
Q Consensus         8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------~~~g~~v~~   71 (185)
                      ..+..|-++++++....+++|+|+++.+|++++++||+||||||||+++        |.|.+.        +.-| .|||
T Consensus         3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaerg-vVFQ   81 (259)
T COG4525           3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERG-VVFQ   81 (259)
T ss_pred             eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccce-eEec
Confidence            3456677788877556699999999999999999999999999999999        333332        1234 8999


Q ss_pred             CCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297          72 DSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus        72 ~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~  126 (185)
                      ++..++                        .+.+.+..+|+++..++.+-+||||||||+.|||++ .+|++++|||||.
T Consensus        82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg  161 (259)
T COG4525          82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG  161 (259)
T ss_pred             cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence            886665                        255677889999999999999999999999999999 9999999999999


Q ss_pred             CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee--eeEEEEecc
Q psy5297         127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN--VHESKYLYH  182 (185)
Q Consensus       127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~--g~i~~~~~~  182 (185)
                      .+|.+.++.+...+++.+++ .|+.++++||+ ++..-+++++++|.-  |+|+...++
T Consensus       162 AlDa~tRe~mQelLldlw~~-tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~  219 (259)
T COG4525         162 ALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL  219 (259)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence            99999988888887777776 79999999999 999999999999984  788876654

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-36  Score=244.43  Aligned_cols=172  Identities=14%  Similarity=0.129  Sum_probs=129.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      +.+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus        20 ~~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~   94 (276)
T PRK14271         20 PAMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR   94 (276)
T ss_pred             cEEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence            455666665543     236799999999999999999999999999999999 4321                      


Q ss_pred             ----HHHhhCceecCCCCCc--chh----------------------hHHHhhcCccc----ccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAAD----SQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++..+  ++.                      .++++.+++.+    ..++.+.+||+||+||++
T Consensus        95 ~~~~~~~~i~-~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~  173 (276)
T PRK14271         95 DVLEFRRRVG-MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC  173 (276)
T ss_pred             hhHHHhhheE-EeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence                122345 899876322  221                      22344555542    356778999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||++ .+|+++||||||+|+|......+.+. +..+++  +.|||++||+ .++.++||++++|++|+++..+++++
T Consensus       174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~  248 (276)
T PRK14271        174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEF-IRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ  248 (276)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999 99999999999777666555544443 355554  4899999999 77889999999999999998877543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6e-36  Score=241.01  Aligned_cols=170  Identities=16%  Similarity=0.158  Sum_probs=127.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus         4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~   78 (252)
T PRK14272          4 LLSAQDVNIYY-----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV   78 (252)
T ss_pred             EEEEeeeEEEE-----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence            45666665544     236799999999999999999999999999999999 3311                       


Q ss_pred             ----HHHhhCceecCCCCCc---chhhHH----------------------HhhcCc----ccccccCcCccHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI---SVVDQI----------------------FTRVGA----ADSQYRGISTFMMEMKETA  107 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~---~~~~~~----------------------l~~~~l----~~~~~~~~~~lS~g~~q~~  107 (185)
                          +...++ |+||++..+   ++.+++                      ++.+++    .+..++++++||+||+||+
T Consensus        79 ~~~~~~~~i~-~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv  157 (252)
T PRK14272         79 DPVAMRRRVG-MVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL  157 (252)
T ss_pred             CHHHhhceeE-EEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence                112344 888876322   222221                      122322    2345778899999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +||+++ .+|+++|||||++|+|......+.+. ++.+++  +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus       158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  232 (252)
T PRK14272        158 CIARALAVEPEILLMDEPTSALDPASTARIEDL-MTDLKK--VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD  232 (252)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999999 99999999999777666555544443 355553  6899999999 7788899999999999999887754

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-36  Score=242.91  Aligned_cols=172  Identities=15%  Similarity=0.088  Sum_probs=132.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------------   60 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------------   60 (185)
                      ++++++...+     +++.+++|+||++++|++++|+||||||||||+|+| |...                        
T Consensus         2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~   76 (272)
T PRK13547          2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI   76 (272)
T ss_pred             eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence            4566665433     236799999999999999999999999999999999 3211                        


Q ss_pred             ----HHHhhCceecCCCC---Ccch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSA---TISV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~---~~~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++.   .+++                         +.++++.+++.+..++++++||+||+||++
T Consensus        77 ~~~~~~~~~~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  155 (272)
T PRK13547         77 DAPRLARLRA-VLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ  155 (272)
T ss_pred             CHHHHHhhcE-EecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence                011234 8888642   1121                         234455677777788999999999999999


Q ss_pred             HHHhC-C---------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297         109 VIKKC-T---------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       109 ia~~l-~---------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~  177 (185)
                      ||+++ .         +|+++||||||+|+|+.....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|+++
T Consensus       156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~  234 (272)
T PRK13547        156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV-RRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV  234 (272)
T ss_pred             HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence            99999 5         89999999997777776666555544 55655348999999999 7788899999999999999


Q ss_pred             EEeccCC
Q psy5297         178 KYLYHTN  184 (185)
Q Consensus       178 ~~~~~~~  184 (185)
                      ..+++++
T Consensus       235 ~~g~~~~  241 (272)
T PRK13547        235 AHGAPAD  241 (272)
T ss_pred             EecCHHH
Confidence            8877543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-36  Score=263.81  Aligned_cols=159  Identities=20%  Similarity=0.190  Sum_probs=128.7

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCC---cc
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSAT---IS   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~---~~   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+              ...++ |+||++..   ++
T Consensus        11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~t   89 (491)
T PRK10982         11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS-MVHQELNLVLQRS   89 (491)
T ss_pred             EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE-EEecccccccCCC
Confidence            5799999999999999999999999999999999        43322              12345 88887521   11


Q ss_pred             ------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          78 ------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        78 ------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                                              .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+..
T Consensus        90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~  169 (491)
T PRK10982         90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE  169 (491)
T ss_pred             HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence                                    123456667777778899999999999999999999 9999999999977776666


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ...+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       170 ~~~l~~~l-~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  220 (491)
T PRK10982        170 VNHLFTII-RKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG  220 (491)
T ss_pred             HHHHHHHH-HHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence            55555543 66665 58999999999 77889999999999999998887654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-36  Score=240.48  Aligned_cols=170  Identities=13%  Similarity=0.138  Sum_probs=128.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                       
T Consensus         4 ~l~~~~l~~~~-----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~   78 (251)
T PRK14249          4 KIKIRGVNFFY-----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL   78 (251)
T ss_pred             eEEEEEEEEEE-----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence            47777776544     225699999999999999999999999999999999 3211                       


Q ss_pred             ----HHHhhCceecCCCCCcc--hhh----------------------HHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATIS--VVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~~--~~~----------------------~~l~~~~l~----~~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++..++  +.+                      +++..+++.    +..++++.+||+||+||++
T Consensus        79 ~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~  157 (251)
T PRK14249         79 DVVNLRKRVG-MVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC  157 (251)
T ss_pred             ChHHhhceEE-EEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence                112244 8888863222  111                      122334432    3457889999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |||++ .+|+++|||||++|+|+.....+.+.+ ..+.  .+.|||++||+ .++..+||++++|++|++...++++
T Consensus       158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~--~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~  231 (251)
T PRK14249        158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELM-QELK--QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG  231 (251)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHh--cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence            99999 999999999997776666655555543 5554  37899999999 7888999999999999999887654

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=2.3e-36  Score=241.48  Aligned_cols=157  Identities=17%  Similarity=0.170  Sum_probs=126.6

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---ch----
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---SV----   78 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~~----   78 (185)
                      +++|+||++++|++++|+||||||||||+++|        |.+.+           ...++ |+||+...+   ++    
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~e~l   92 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS-YVPQNYALFPHMTVYKNI   92 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEE-EEeecCccCCCccHHHHH
Confidence            89999999999999999999999999999999        43322           22345 888876322   11    


Q ss_pred             -----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297          79 -----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI  140 (185)
Q Consensus        79 -----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i  140 (185)
                                       +.++++.+++.+..++.+.+||+||+||++||+++ .+|++++||||++|+|......+.+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  172 (235)
T cd03299          93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL  172 (235)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence                             23456778888888999999999999999999999 999999999997776666655554433


Q ss_pred             HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         141 ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       141 l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                       +.+.++.+.|+|++||+ .++.++||++++|++|+++..++++
T Consensus       173 -~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~  215 (235)
T cd03299         173 -KKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE  215 (235)
T ss_pred             -HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence             55554358999999999 7788899999999999999887654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.9e-36  Score=249.22  Aligned_cols=173  Identities=13%  Similarity=0.143  Sum_probs=129.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .++++++...|-   ++.+++|+|+||++++|++++|+||||||||||+++| |...                       
T Consensus        80 ~i~~~nls~~y~---~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         80 VFEIRNFNFWYM---NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             eEEEEeeEEEec---CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            445555544331   1235699999999999999999999999999999999 3321                       


Q ss_pred             ----HHHhhCceecCCCCCc--chh----------------------hHHHhhcCc----ccccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGA----ADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l----~~~~~~~~~~lS~g~~q~~~  108 (185)
                          ++..++ |+||++..+  ++.                      ..+++.+++    ....+++..+||+|||||++
T Consensus       157 ~~~~lr~~i~-~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~  235 (329)
T PRK14257        157 SSLELRTRIG-MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC  235 (329)
T ss_pred             chHhhhccEE-EEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence                123345 999987332  221                      122344444    23457888999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||++ .+|+++|||||++++|+.....+.+.+ ..+.+  ++|+|++||+ ..+.++||++++|++|++++.|++++
T Consensus       236 LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i-~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~  310 (329)
T PRK14257        236 IARAIALEPEVLLMDEPTSALDPIATAKIEELI-LELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT  310 (329)
T ss_pred             HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999 999999999997777665555544433 55554  6899999999 77788999999999999999998765

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=6e-36  Score=244.36  Aligned_cols=173  Identities=12%  Similarity=0.109  Sum_probs=132.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHH-------------HHHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSV-------------FLAQ   64 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~-------------~~~~   64 (185)
                      .++++++...|-   ++..++++|+||++++|++++|+||||||||||+++|       |.|.             ++..
T Consensus         2 ~i~~~nls~~~~---~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~   78 (275)
T cd03289           2 QMTVKDLTAKYT---EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKA   78 (275)
T ss_pred             eEEEEEEEEEeC---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhh
Confidence            366777765442   2235699999999999999999999999999999999       3221             1234


Q ss_pred             hCceecCCCCCcc----------------hhhHHHhhcCcccccccCcCc-----------cHHHHHHHHHHHHhC-CCC
Q psy5297          65 IGCFVPCDSATIS----------------VVDQIFTRVGAADSQYRGIST-----------FMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~~~~~~~-----------lS~g~~q~~~ia~~l-~~p  116 (185)
                      ++ |+||++..++                .+.++++.+++.+..++.+..           ||+||+||+++||++ .+|
T Consensus        79 i~-~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p  157 (275)
T cd03289          79 FG-VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  157 (275)
T ss_pred             EE-EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            55 9999874332                123455677777777776765           999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+++|+.....+.+.+ ..+.  .++|||++||+.+....|||+++|++|+++..+++++
T Consensus       158 ~illlDEpts~LD~~~~~~l~~~l-~~~~--~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~  222 (275)
T cd03289         158 KILLLDEPSAHLDPITYQVIRKTL-KQAF--ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQK  222 (275)
T ss_pred             CEEEEECccccCCHHHHHHHHHHH-HHhc--CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHH
Confidence            999999997777666655555544 4332  4799999999944444599999999999999988765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-36  Score=242.89  Aligned_cols=171  Identities=16%  Similarity=0.176  Sum_probs=126.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------H----------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------F----------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------~----------------   61 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+|+||||||||+|+| |...      .                
T Consensus        24 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         24 VFDTQNLNLWY-----GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             EEEEeeeEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            34555554322     235699999999999999999999999999999999 4321      0                


Q ss_pred             -----HHhhCceecCCCCCc--chhhHH----------------------Hhhc----CcccccccCcCccHHHHHHHHH
Q psy5297          62 -----LAQIGCFVPCDSATI--SVVDQI----------------------FTRV----GAADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        62 -----~~~~g~~v~~~~~~~--~~~~~~----------------------l~~~----~l~~~~~~~~~~lS~g~~q~~~  108 (185)
                           ...++ |+||++..+  ++.+++                      ++.+    ++.+..++++.+||+||+||++
T Consensus        99 ~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~  177 (271)
T PRK14238         99 SVEELRTNVG-MVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC  177 (271)
T ss_pred             cHHHHhhhEE-EEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence                 12244 888886322  222221                      1222    2233457788999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus       178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~  252 (271)
T PRK14238        178 IARCLAIEPDVILMDEPTSALDPISTLKVEELV-QELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK  252 (271)
T ss_pred             HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999 999999999997777666655555544 56654  6899999999 77788999999999999998877543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.2e-36  Score=262.17  Aligned_cols=171  Identities=15%  Similarity=0.166  Sum_probs=132.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------H--------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------F--------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------~--------------   61 (185)
                      ++++++...|     +++.+++|+||++++|++++|+||||||||||+|+| |...         +              
T Consensus         2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~   76 (500)
T TIGR02633         2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE   76 (500)
T ss_pred             EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence            5566665444     235799999999999999999999999999999999 3221         1              


Q ss_pred             HHhhCceecCCCCC---cc-------------------------hhhHHHhhcCccccc-ccCcCccHHHHHHHHHHHHh
Q psy5297          62 LAQIGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        62 ~~~~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~-~~~~~~lS~g~~q~~~ia~~  112 (185)
                      ...++ |+||++..   ++                         .+.++++.+++.+.. ++++++||+|||||++||++
T Consensus        77 ~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~a  155 (500)
T TIGR02633        77 RAGIV-IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKA  155 (500)
T ss_pred             hCCEE-EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHH
Confidence            11245 88887521   11                         123456667776554 57799999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      + .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (500)
T TIGR02633       156 LNKQARLLILDEPSSSLTEKETEILLDII-RDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST  227 (500)
T ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence            9 999999999997777766655555544 66665 58999999999 78889999999999999988876653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-36  Score=263.04  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=126.5

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCC---CC---
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDS---AT---   75 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~---~~---   75 (185)
                      .+++|+||++++|++++|+||||||||||+|+|        |.|.+              ...++ |+||++   ..   
T Consensus       277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~  355 (510)
T PRK09700        277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA-YITESRRDNGFFPN  355 (510)
T ss_pred             CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE-EccCccccCCCcCC
Confidence            389999999999999999999999999999999        33322              12345 899862   01   


Q ss_pred             cc------------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297          76 IS------------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE  123 (185)
Q Consensus        76 ~~------------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE  123 (185)
                      ++                              .++++++.+++. +..++++++||+|||||++||+++ .+|+++||||
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE  435 (510)
T PRK09700        356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE  435 (510)
T ss_pred             CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence            11                              123566778886 678999999999999999999999 9999999999


Q ss_pred             CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297         124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      ||+|+|+.....+.+.+ +.+++ .|.|||++||| .++..+||++++|++|++...++.
T Consensus       436 Pt~~LD~~~~~~l~~~l-~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        436 PTRGIDVGAKAEIYKVM-RQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             CCCCcCHHHHHHHHHHH-HHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            97777776666555544 66665 58999999999 788899999999999999887754

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=9.1e-36  Score=235.74  Aligned_cols=168  Identities=17%  Similarity=0.172  Sum_probs=128.2

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~   61 (185)
                      +++++++..+-. ..+.+.+++|+||++++|++++|+||||||||||+++|        |.|.                +
T Consensus         2 l~~~~l~~~~~~-~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (220)
T TIGR02982         2 ISIRNLNHYYGH-GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL   80 (220)
T ss_pred             EEEEEEEEEccC-CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence            456666543311 01125799999999999999999999999999999999        3221                1


Q ss_pred             HHhhCceecCCCCCc---c----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          62 LAQIGCFVPCDSATI---S----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~---~----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ...++ |+||++..+   +                      .+.++++.+++.+..++++.+||+||+||+++|+++ .+
T Consensus        81 ~~~i~-~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~  159 (220)
T TIGR02982        81 RRNIG-YIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR  159 (220)
T ss_pred             HhheE-EEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            23455 888876211   1                      134566778888888999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeE
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i  176 (185)
                      |+++|||||++|+|......+...+ +.+.++.+.|+|++||+.+..++||++++|++|++
T Consensus       160 p~illlDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       160 PKLVLADEPTAALDSKSGRDVVELM-QKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            9999999997776665555455543 55554358999999999657789999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.9e-36  Score=261.19  Aligned_cols=180  Identities=17%  Similarity=0.120  Sum_probs=143.2

Q ss_pred             CceEEEcccCCceeeec------CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------
Q psy5297           3 TGTLVLNQCRHPIVELQ------GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~------~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------   61 (185)
                      ++.++++|+...|....      .+...+++||||++.+||+++|+|++|||||||.|+|        |.+.+       
T Consensus       278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~  357 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL  357 (539)
T ss_pred             CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence            56778888877665422      1234689999999999999999999999999999999        33322       


Q ss_pred             --------HHhhCceecCCCC-Cc----c----------------------hhhHHHhhcCccc-ccccCcCccHHHHHH
Q psy5297          62 --------LAQIGCFVPCDSA-TI----S----------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKE  105 (185)
Q Consensus        62 --------~~~~g~~v~~~~~-~~----~----------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q  105 (185)
                              +.++ .++||++. .+    +                      .+.++++.+++.. ..++++.+|||||||
T Consensus       358 ~~~~~~~~r~~~-QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ  436 (539)
T COG1123         358 TGGELRRLRRRI-QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ  436 (539)
T ss_pred             ccchhhhhhhhe-EEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence                    1222 37788772 11    1                      2566788889876 689999999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |++|||++ .+|+++++|||++.+|+.-...+.+++ ..+.++.|.|.+++||| ..+..+|||+.+|++|++++.|+.+
T Consensus       437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl-~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~  515 (539)
T COG1123         437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLL-KDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE  515 (539)
T ss_pred             HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH-HHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence            99999999 999999999996666665555555544 67776689999999999 7788899999999999999999655


Q ss_pred             C
Q psy5297         184 N  184 (185)
Q Consensus       184 ~  184 (185)
                      +
T Consensus       516 ~  516 (539)
T COG1123         516 K  516 (539)
T ss_pred             H
Confidence            3

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=9e-36  Score=237.48  Aligned_cols=156  Identities=17%  Similarity=0.176  Sum_probs=118.5

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCc--chh
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATI--SVV   79 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~--~~~   79 (185)
                      .++++|+||++++|++++|+||||||||||+|+|        |.+.             +...++ |+||++..+  ++.
T Consensus        15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~   93 (234)
T cd03251          15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG-LVSQDVFLFNDTVA   93 (234)
T ss_pred             ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE-EeCCCCeeccccHH
Confidence            3699999999999999999999999999999999        3221             123455 888876221  221


Q ss_pred             hH------------------------HHhhc--CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          80 DQ------------------------IFTRV--GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        80 ~~------------------------~l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                      ++                        +++.+  ++....++++.+||+||+||++||+++ .+|+++|||||++|+|+..
T Consensus        94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  173 (234)
T cd03251          94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES  173 (234)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            11                        11122  344445677899999999999999999 9999999999977776666


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ...+.+.+ ..+.  ++.|||++||+ .++.. ||++++|++|++...++++
T Consensus       174 ~~~l~~~l-~~~~--~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~  221 (234)
T cd03251         174 ERLVQAAL-ERLM--KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHE  221 (234)
T ss_pred             HHHHHHHH-HHhc--CCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHH
Confidence            55555544 5554  37899999999 66654 9999999999998877654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=239.57  Aligned_cols=171  Identities=14%  Similarity=0.185  Sum_probs=127.5

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      +.++++++...+     +.+.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus         4 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14255          4 KIITSSDVHLFY-----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN   78 (252)
T ss_pred             ceEEEEeEEEEE-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence            456666666544     235799999999999999999999999999999999 4211                      


Q ss_pred             -----HHHhhCceecCCCCCc--chhhH----------------------HHhhcCc----ccccccCcCccHHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSATI--SVVDQ----------------------IFTRVGA----ADSQYRGISTFMMEMKETA  107 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~~--~~~~~----------------------~l~~~~l----~~~~~~~~~~lS~g~~q~~  107 (185)
                           +...++ |+||++..+  ++.++                      .++.+++    .+..++.+.+||+||+||+
T Consensus        79 ~~~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv  157 (252)
T PRK14255         79 EDVVQLRKQVG-MVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV  157 (252)
T ss_pred             ccHHHhcCeEE-EEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence                 011244 888876322  22111                      1223333    2345778899999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +||+++ .+|+++|||||++|+|......+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..+++.
T Consensus       158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~  232 (252)
T PRK14255        158 CIARVLAVKPDVILLDEPTSALDPISSTQIENML-LELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK  232 (252)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999999 999999999997776666555554543 55554  4799999999 7778899999999999999887653

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-35  Score=240.18  Aligned_cols=172  Identities=15%  Similarity=0.161  Sum_probs=128.0

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      +.++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus         9 ~~l~i~~v~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   83 (264)
T PRK14243          9 TVLRTENLNVYY-----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD   83 (264)
T ss_pred             eEEEEeeeEEEE-----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence            346666665443     235799999999999999999999999999999999 3211                      


Q ss_pred             -----HHHhhCceecCCCCCc--chhh--------------------HHHhhcCcc----cccccCcCccHHHHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSATI--SVVD--------------------QIFTRVGAA----DSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~~--~~~~--------------------~~l~~~~l~----~~~~~~~~~lS~g~~q~~~i  109 (185)
                           +...++ |+||++..+  ++.+                    .+++.+++.    +..++++.+||+||+||++|
T Consensus        84 ~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l  162 (264)
T PRK14243         84 VDPVEVRRRIG-MVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI  162 (264)
T ss_pred             cChHHHhhhEE-EEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence                 012344 888875322  2221                    123333432    23567888999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee---------eeeEEE
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR---------NVHESK  178 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~---------~g~i~~  178 (185)
                      ||++ .+|+++|||||++|+|+.....+.+.+ ..+.+  +.|||++||+ .++.++||++++|+         +|+++.
T Consensus       163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~  239 (264)
T PRK14243        163 ARAIAVQPEVILMDEPCSALDPISTLRIEELM-HELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE  239 (264)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            9999 999999999997777666655554443 55654  4799999999 88899999999998         799998


Q ss_pred             EeccCC
Q psy5297         179 YLYHTN  184 (185)
Q Consensus       179 ~~~~~~  184 (185)
                      .+++++
T Consensus       240 ~~~~~~  245 (264)
T PRK14243        240 FDRTEK  245 (264)
T ss_pred             eCCHHH
Confidence            877644

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=5.9e-36  Score=262.99  Aligned_cols=167  Identities=14%  Similarity=0.150  Sum_probs=133.3

Q ss_pred             eeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCC
Q psy5297          15 IVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCD   72 (185)
Q Consensus        15 ~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~   72 (185)
                      +++.++-...+++|+||++++|++++|+||||||||||+|+|        |.|.+              ...++ |+||+
T Consensus       268 ~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~-~v~q~  346 (510)
T PRK15439        268 VLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV-YLPED  346 (510)
T ss_pred             eEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE-ECCCC
Confidence            555555112379999999999999999999999999999999        43322              11244 88886


Q ss_pred             CC------Ccc------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          73 SA------TIS------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        73 ~~------~~~------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      +.      .++                        .++++++.+++. +..++++++||+|||||++||+++ .+|++||
T Consensus       347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLl  426 (510)
T PRK15439        347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLI  426 (510)
T ss_pred             hhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEE
Confidence            20      011                        123456778886 678999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||+|+|+.....+.+.+ ..+++ .|.|||++||| .++.++||++++|++|+++..+++++
T Consensus       427 LDEPt~gLD~~~~~~l~~~l-~~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~  489 (510)
T PRK15439        427 VDEPTRGVDVSARNDIYQLI-RSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA  489 (510)
T ss_pred             ECCCCcCcChhHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence            99998888777766666644 66766 58999999999 88889999999999999999988765

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-35  Score=238.63  Aligned_cols=171  Identities=15%  Similarity=0.112  Sum_probs=128.9

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------   60 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------   60 (185)
                      +.+++++++..+     +++.+++|+||++++|++++|+||||||||||+|+| |...                      
T Consensus         5 ~~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   79 (253)
T PRK14261          5 IILSTKNLNLWY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG   79 (253)
T ss_pred             ceEEEeeeEEEE-----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence            456666665433     236799999999999999999999999999999999 3210                      


Q ss_pred             -----HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHH
Q psy5297          61 -----FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETA  107 (185)
Q Consensus        61 -----~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~  107 (185)
                           +...++ |+||++..+  ++                      +.++++.+++.    +..++++.+||+||+||+
T Consensus        80 ~~~~~~~~~i~-~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv  158 (253)
T PRK14261         80 ADVVALRRKIG-MVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL  158 (253)
T ss_pred             cchhhhhceEE-EEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH
Confidence                 011234 888876322  11                      12233444442    235788899999999999


Q ss_pred             HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +||+++ .+|+++|||||++|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..++++
T Consensus       159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l-~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~  233 (253)
T PRK14261        159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLI-EDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT  233 (253)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence            999999 999999999997777766655555544 55654  5899999999 7788899999999999999887754

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-35  Score=240.90  Aligned_cols=157  Identities=15%  Similarity=0.141  Sum_probs=121.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------------HHHhhCceecCCCC
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------------FLAQIGCFVPCDSA   74 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------------~~~~~g~~v~~~~~   74 (185)
                      +.+++|+||++++|++++|+||||||||||+|+| |...                           +...++ |+||+..
T Consensus        38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~-~v~q~~~  116 (272)
T PRK14236         38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVG-MVFQRPN  116 (272)
T ss_pred             eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEE-EEecCCc
Confidence            5799999999999999999999999999999999 4321                           112334 8888753


Q ss_pred             Cc--chh----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          75 TI--SVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        75 ~~--~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      .+  ++.                      .++++.+++.    +..++.+.+||+||+||++|||++ .+|+++||||||
T Consensus       117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt  196 (272)
T PRK14236        117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT  196 (272)
T ss_pred             cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            22  221                      2233444543    235678899999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +|+|+.....+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..++++
T Consensus       197 ~gLD~~~~~~l~~~L-~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  252 (272)
T PRK14236        197 SALDPISTLKIEELI-TELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD  252 (272)
T ss_pred             ccCCHHHHHHHHHHH-HHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence            777666555554443 55554  6899999999 7788999999999999999887654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.8e-36  Score=256.61  Aligned_cols=173  Identities=15%  Similarity=0.166  Sum_probs=138.1

Q ss_pred             CCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------
Q psy5297           2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------   62 (185)
Q Consensus         2 ~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------   62 (185)
                      +.+.+++++..+.|     +...+|+++||++.+||+++|+|.||||||||+|+|        |.|.+.           
T Consensus         5 ~~~ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~   79 (500)
T COG1129           5 TPPLLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD   79 (500)
T ss_pred             ccceeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence            34567777777666     335799999999999999999999999999999999        444331           


Q ss_pred             -HhhC-ceecCCC---CCcch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          63 -AQIG-CFVPCDS---ATISV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        63 -~~~g-~~v~~~~---~~~~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                       ...| ..|+|+.   +.+++                         +.++++.+++....+.++++||.||||.++|||+
T Consensus        80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArA  159 (500)
T COG1129          80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARA  159 (500)
T ss_pred             HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHH
Confidence             1112 2677765   22333                         3455666776444889999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      + .+++++||||||+.++..+.+.+... ++.+++ +|.++|++||. +|+.++|||+.+|+||+.+...+
T Consensus       160 l~~~arllIlDEPTaaLt~~E~~~Lf~~-ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         160 LSFDARVLILDEPTAALTVKETERLFDL-IRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence            9 99999999999777776666666554 488887 79999999998 99999999999999999998877

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1e-35  Score=239.63  Aligned_cols=174  Identities=18%  Similarity=0.213  Sum_probs=129.7

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH---------HHH-----------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV---------SVF-----------   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~---------i~~-----------   61 (185)
                      ++.++++++...+     +++.+++|+||++++|++++|+||||||||||+|+| |.         +.+           
T Consensus         5 ~~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~   79 (252)
T CHL00131          5 KPILEIKNLHASV-----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE   79 (252)
T ss_pred             CceEEEEeEEEEe-----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence            3457777776544     235799999999999999999999999999999999 32         111           


Q ss_pred             -HHhh-CceecCCCCCcc-------------------------------hhhHHHhhcCcc-cccccCcC-ccHHHHHHH
Q psy5297          62 -LAQI-GCFVPCDSATIS-------------------------------VVDQIFTRVGAA-DSQYRGIS-TFMMEMKET  106 (185)
Q Consensus        62 -~~~~-g~~v~~~~~~~~-------------------------------~~~~~l~~~~l~-~~~~~~~~-~lS~g~~q~  106 (185)
                       ..+. ..|+||.+..++                               .+.++++.+++. ...++.+. .||+||+||
T Consensus        80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr  159 (252)
T CHL00131         80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR  159 (252)
T ss_pred             hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence             0111 126777642111                               123456667776 35677776 599999999


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEeccC
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++||+++ .+|+++||||||+|+|......+.+.+ ..+++ .+.|||++||+ ..+..+ ||++++|++|+++..++++
T Consensus       160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~  237 (252)
T CHL00131        160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGI-NKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE  237 (252)
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence            9999999 999999999997777666655555544 55655 58999999999 666666 8999999999999888765

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=8.8e-36  Score=236.83  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=124.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~   63 (185)
                      .+++++++..+-    +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+             ..
T Consensus         2 ~l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   77 (229)
T cd03254           2 EIEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS   77 (229)
T ss_pred             eEEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh
Confidence            356667665441    124699999999999999999999999999999999        33311             23


Q ss_pred             hhCceecCCCCCc--ch---------------hhHHHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATI--SV---------------VDQIFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~--~~---------------~~~~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      .++ |+||++..+  ++               +...++.+++           ....++.+.+||+|||||++||+++ .
T Consensus        78 ~i~-~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~  156 (229)
T cd03254          78 MIG-VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR  156 (229)
T ss_pred             hEE-EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            355 999876322  11               1122222232           2334556789999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +|+++|||||++|+|+.....+...+ ..++  .+.|||++||+ .++ ..||++++|++|++...++.+
T Consensus       157 ~p~llllDEP~~~LD~~~~~~l~~~l-~~~~--~~~tii~~sh~~~~~-~~~d~i~~l~~g~~~~~~~~~  222 (229)
T cd03254         157 DPKILILDEATSNIDTETEKLIQEAL-EKLM--KGRTSIIIAHRLSTI-KNADKILVLDDGKIIEEGTHD  222 (229)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHH-HHhc--CCCEEEEEecCHHHH-hhCCEEEEEeCCeEEEeCCHH
Confidence            99999999997777666655555544 5554  38899999999 555 569999999999998876654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-35  Score=238.79  Aligned_cols=173  Identities=13%  Similarity=0.190  Sum_probs=127.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .+++++++..+     +...+++|+||++++|++++|+||||||||||+++| |...                       
T Consensus         7 ~l~~~nl~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~   81 (261)
T PRK14258          7 AIKVNNLSFYY-----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV   81 (261)
T ss_pred             eEEEeeEEEEe-----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence            45666665444     224699999999999999999999999999999999 2110                       


Q ss_pred             ----HHHhhCceecCCCCC--cchh----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSAT--ISVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~--~~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++..  .++.                      .++++.+++.    +..++++.+||+||+||++
T Consensus        82 ~~~~~~~~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~  160 (261)
T PRK14258         82 NLNRLRRQVS-MVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLC  160 (261)
T ss_pred             chHHhhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence                011234 78877522  2221                      1233445542    2457888999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee-----eeEEEEec
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN-----VHESKYLY  181 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~-----g~i~~~~~  181 (185)
                      ||+++ .+|+++||||||+|+|......+.+.+ ..++++.+.|+|++||+ .++.++||++++|++     |+++..++
T Consensus       161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l-~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~  239 (261)
T PRK14258        161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLI-QSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGL  239 (261)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCC
Confidence            99999 999999999996666655544444433 55543358999999999 788899999999999     99998887


Q ss_pred             cCC
Q psy5297         182 HTN  184 (185)
Q Consensus       182 ~~~  184 (185)
                      +++
T Consensus       240 ~~~  242 (261)
T PRK14258        240 TKK  242 (261)
T ss_pred             HHH
Confidence            654

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6.8e-36  Score=235.70  Aligned_cols=162  Identities=14%  Similarity=0.046  Sum_probs=124.5

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------HHhh
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------LAQI   65 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------~~~~   65 (185)
                      +.++++++...+     +++.+++++||++++|++++|+||||||||||+|+|        |.+.+          ...+
T Consensus        10 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i   84 (214)
T PRK13543         10 PLLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM   84 (214)
T ss_pred             ceEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence            345666665433     235699999999999999999999999999999999        43322          1224


Q ss_pred             CceecCCCCCc---ch------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297          66 GCFVPCDSATI---SV------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE  123 (185)
Q Consensus        66 g~~v~~~~~~~---~~------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE  123 (185)
                      + |++|.+..+   ++                  +.++++.+++.+..++++.+||+|||||+++|+++ .+|+++||||
T Consensus        85 ~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (214)
T PRK13543         85 A-YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE  163 (214)
T ss_pred             E-EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            5 888875221   21                  23456677888778999999999999999999999 9999999999


Q ss_pred             CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee
Q psy5297         124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN  173 (185)
Q Consensus       124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~  173 (185)
                      |++++|+.....+.+. +..+++ .+.|+|++||+ .++.++||++++++.
T Consensus       164 Pt~~LD~~~~~~l~~~-l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        164 PYANLDLEGITLVNRM-ISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             CcccCCHHHHHHHHHH-HHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence            9777666555544443 355555 58899999999 888899999988763

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=239.53  Aligned_cols=160  Identities=17%  Similarity=0.198  Sum_probs=124.2

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------------HHhhCceecCCC
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------------LAQIGCFVPCDS   73 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------------~~~~g~~v~~~~   73 (185)
                      +.+.+++|+||++++|++++|+||||||||||+++|        |.+.+                   ...++ |+||++
T Consensus        21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~-~~~q~~   99 (257)
T PRK14246         21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVG-MVFQQP   99 (257)
T ss_pred             CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceE-EEccCC
Confidence            346799999999999999999999999999999999        32211                   12344 888876


Q ss_pred             CCc---ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297          74 ATI---SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE  123 (185)
Q Consensus        74 ~~~---~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE  123 (185)
                      ..+   ++                      +.++++.+++.    +..++.+..||+|||||++|||++ .+|+++||||
T Consensus       100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE  179 (257)
T PRK14246        100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE  179 (257)
T ss_pred             ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            322   21                      12334556664    345778899999999999999999 9999999999


Q ss_pred             CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||+|+|......+.+.+ ..+++  +.|+|++||+ .++..+||++++|++|++...++.++
T Consensus       180 Pt~~LD~~~~~~l~~~l-~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~  238 (257)
T PRK14246        180 PTSMIDIVNSQAIEKLI-TELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE  238 (257)
T ss_pred             CCccCCHHHHHHHHHHH-HHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            97777666655555544 55543  5899999999 67779999999999999998886543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.6e-35  Score=234.14  Aligned_cols=169  Identities=15%  Similarity=0.162  Sum_probs=124.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~   63 (185)
                      .++++++...+-   ++.+++++|+||++++|++++|+||||||||||+|+|        |.|.             +..
T Consensus         2 ~l~~~~l~~~~~---~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   78 (221)
T cd03244           2 DIEFKNVSLRYR---PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS   78 (221)
T ss_pred             cEEEEEEEEecC---CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence            356666654442   2235799999999999999999999999999999999        3221             123


Q ss_pred             hhCceecCCCCCcc--h--------------hhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          64 QIGCFVPCDSATIS--V--------------VDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~--------------~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      .++ |+||++..++  +              +.++++.+++.+..           ++++.+||+||+||++|||++ .+
T Consensus        79 ~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~  157 (221)
T cd03244          79 RIS-IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK  157 (221)
T ss_pred             hEE-EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence            455 8998863221  1              22233445554433           468899999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      |+++|||||++|+|+.....+.+.+ +.+.+  +.|+|++||+ .++. .||++++|++|++...++
T Consensus       158 p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         158 SKILVLDEATASVDPETDALIQKTI-REAFK--DCTVLTIAHRLDTII-DSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHH-HHhcC--CCEEEEEeCCHHHHh-hCCEEEEEECCeEEecCC
Confidence            9999999997777666555554433 45543  6899999999 5554 599999999999987764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-35  Score=238.44  Aligned_cols=171  Identities=15%  Similarity=0.172  Sum_probs=128.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+|+||||||||+|+| |...                       
T Consensus         7 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   81 (259)
T PRK14260          7 AIKVKDLSFYY-----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI   81 (259)
T ss_pred             eEEEEEEEEEE-----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence            45666665444     235699999999999999999999999999999999 4211                       


Q ss_pred             ----HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCc----ccccccCcCccHHHHHHHHH
Q psy5297          61 ----FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGA----ADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l----~~~~~~~~~~lS~g~~q~~~  108 (185)
                          +...++ |+||++..+  ++                      +.++++.+++    .+..++.+.+||+||+||++
T Consensus        82 ~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~  160 (259)
T PRK14260         82 NINRLRRQIG-MVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC  160 (259)
T ss_pred             chHhhhhheE-EEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence                112344 888876321  21                      1233344555    23567888999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee-----eeeEEEEec
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR-----NVHESKYLY  181 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~-----~g~i~~~~~  181 (185)
                      ||+++ .+|+++||||||+|+|+.....+.+.+ ..+++  +.|||++||+ .++.++||++++|+     +|+++..++
T Consensus       161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~  237 (259)
T PRK14260        161 IARALAIKPKVLLMDEPCSALDPIATMKVEELI-HSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV  237 (259)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence            99999 999999999997776665555444433 55543  5899999999 88889999999998     599998887


Q ss_pred             cCC
Q psy5297         182 HTN  184 (185)
Q Consensus       182 ~~~  184 (185)
                      +++
T Consensus       238 ~~~  240 (259)
T PRK14260        238 TTQ  240 (259)
T ss_pred             HHH
Confidence            653

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.4e-35  Score=235.47  Aligned_cols=155  Identities=15%  Similarity=0.202  Sum_probs=122.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---H-----------------HHhhCceecCCCCCc---ch
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---F-----------------LAQIGCFVPCDSATI---SV   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---~-----------------~~~~g~~v~~~~~~~---~~   78 (185)
                      +.+++|+||++++|++++|+||||||||||+|+| |...   .                 ...++ |+||++..+   ++
T Consensus        20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~tv   98 (226)
T cd03234          20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA-YVRQDDILLPGLTV   98 (226)
T ss_pred             cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEE-EeCCCCccCcCCcH
Confidence            6799999999999999999999999999999999 4322   1                 12344 888876222   21


Q ss_pred             h------------------------hH-HHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          79 V------------------------DQ-IFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        79 ~------------------------~~-~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                      .                        .. +++.+++.+..++.+++||+||+||+++|+++ .+|+++|||||++|+|+..
T Consensus        99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~  178 (226)
T cd03234          99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT  178 (226)
T ss_pred             HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence            1                        12 45555666667788999999999999999999 9999999999988877766


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-h-HHHHhhccccceeeeeEEEEe
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-H-EIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      ...+.+.+ ..+.+ .+.|+|++||+ . ++.++||++++|++|++++.|
T Consensus       179 ~~~~~~~l-~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         179 ALNLVSTL-SQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHH-HHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            66555544 55655 48899999998 3 789999999999999997653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=2.4e-35  Score=236.89  Aligned_cols=170  Identities=17%  Similarity=0.163  Sum_probs=124.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------HH-------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------VF-------------L   62 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------~~-------------~   62 (185)
                      ++++++...+     +++.+++|+||++++|++++|+||||||||||+|+| |..         .+             .
T Consensus         2 i~~~nl~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~   76 (248)
T PRK09580          2 LSIKDLHVSV-----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA   76 (248)
T ss_pred             eEEEEEEEEe-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHh
Confidence            4566665443     235799999999999999999999999999999999 431         11             0


Q ss_pred             -HhhCceecCCCCCcc-------------------------------hhhHHHhhcCcc-cccccCcC-ccHHHHHHHHH
Q psy5297          63 -AQIGCFVPCDSATIS-------------------------------VVDQIFTRVGAA-DSQYRGIS-TFMMEMKETAT  108 (185)
Q Consensus        63 -~~~g~~v~~~~~~~~-------------------------------~~~~~l~~~~l~-~~~~~~~~-~lS~g~~q~~~  108 (185)
                       ..++ |++|++..++                               .++++++.+++. +..++.+. +||+|||||++
T Consensus        77 ~~~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~  155 (248)
T PRK09580         77 GEGIF-MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND  155 (248)
T ss_pred             hcceE-EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHH
Confidence             1244 7787752111                               112233444553 34455564 79999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEeccC
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~~  183 (185)
                      ||+++ .+|+++||||||+|+|......+.+. ++.+++ .+.|||++||+ ..+... ||++++|++|+++..++++
T Consensus       156 laral~~~p~illLDEPt~~LD~~~~~~l~~~-l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~  231 (248)
T PRK09580        156 ILQMAVLEPELCILDESDSGLDIDALKIVADG-VNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT  231 (248)
T ss_pred             HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence            99999 99999999999777666555555443 356665 58999999999 666666 8999999999998887654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-35  Score=259.67  Aligned_cols=159  Identities=18%  Similarity=0.196  Sum_probs=127.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H--------HHHH--------------HHhhCceecCCCC---Cc
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G--------VSVF--------------LAQIGCFVPCDSA---TI   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G--------~i~~--------------~~~~g~~v~~~~~---~~   76 (185)
                      +.+++|+||++++|++++|+||||||||||+|+| |        .|.+              ..+++ |+||+..   .+
T Consensus       273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~l~  351 (500)
T TIGR02633       273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIA-MVPEDRKRHGIV  351 (500)
T ss_pred             ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCE-EcCcchhhCCcC
Confidence            4699999999999999999999999999999999 2        2221              12345 8888731   00


Q ss_pred             ---c--------------------------hhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          77 ---S--------------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        77 ---~--------------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                         +                          .+.++++.+++.+ ..++++.+||+|||||++||+++ .+|+++||||||
T Consensus       352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt  431 (500)
T TIGR02633       352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT  431 (500)
T ss_pred             CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence               0                          1345667788864 57899999999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+|+.....+.+.+ ..+++ .|.|||++||| .++.++||++++|++|++....+.++
T Consensus       432 ~~LD~~~~~~l~~~l-~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~  489 (500)
T TIGR02633       432 RGVDVGAKYEIYKLI-NQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA  489 (500)
T ss_pred             CCcCHhHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence            777776655555544 67766 58999999999 88889999999999999998776543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=260.64  Aligned_cols=167  Identities=15%  Similarity=0.127  Sum_probs=132.7

Q ss_pred             eeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCC
Q psy5297          15 IVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCD   72 (185)
Q Consensus        15 ~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~   72 (185)
                      .++.++-...+++|+||++++|++++|+||||||||||+|+|        |.|.+              ..+++ |+||+
T Consensus       257 ~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~-~v~q~  335 (501)
T PRK10762        257 RLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV-YISED  335 (501)
T ss_pred             EEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE-EecCc
Confidence            455544223479999999999999999999999999999999        33322              12355 99987


Q ss_pred             CC------Ccc---------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          73 SA------TIS---------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        73 ~~------~~~---------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      +.      .++                           .++++++.+++. +..++++.+||+|||||++||+++ .+|+
T Consensus       336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~  415 (501)
T PRK10762        336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPK  415 (501)
T ss_pred             cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence            41      111                           123456777884 578999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       416 lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~  481 (501)
T PRK10762        416 VLILDEPTRGVDVGAKKEIYQLI-NQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ  481 (501)
T ss_pred             EEEEcCCCCCCCHhHHHHHHHHH-HHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence            99999998887777766666644 66665 48999999999 88889999999999999998887665

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=260.58  Aligned_cols=159  Identities=18%  Similarity=0.141  Sum_probs=128.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------HhhCceecCCCC---C--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------------AQIGCFVPCDSA---T--   75 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------------~~~g~~v~~~~~---~--   75 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+.              ..++ |+||++.   .  
T Consensus       266 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~  344 (501)
T PRK11288        266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM-LCPEDRKAEGIIP  344 (501)
T ss_pred             CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE-EcCcCHhhCCCcC
Confidence            3589999999999999999999999999999999        444321              1234 8888631   1  


Q ss_pred             -cc---------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          76 -IS---------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        76 -~~---------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                       .+                           .+.++++.+++. +..++++.+||+|||||++||+++ .+|++|||||||
T Consensus       345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt  424 (501)
T PRK11288        345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT  424 (501)
T ss_pred             CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCC
Confidence             11                           123456677884 678999999999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+|+.....+.+.+ ..+++ .|.|||++||| .++.++||++++|++|+++..++.++
T Consensus       425 ~~LD~~~~~~l~~~l-~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~  482 (501)
T PRK11288        425 RGIDVGAKHEIYNVI-YELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ  482 (501)
T ss_pred             CCCCHhHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence            777776666565544 66766 58999999999 88889999999999999999987765

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-35  Score=235.81  Aligned_cols=170  Identities=14%  Similarity=0.164  Sum_probs=128.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------------   60 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------------   60 (185)
                      ++++++...|     +++.+++|+||++++|++++|+||||||||||+|+| |...                        
T Consensus         4 l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~   78 (250)
T PRK14266          4 IEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD   78 (250)
T ss_pred             EEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence            5666665444     235799999999999999999999999999999999 3221                        


Q ss_pred             ---HHHhhCceecCCCCCc--chh----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHHH
Q psy5297          61 ---FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        61 ---~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~i  109 (185)
                         +...++ |+||++..+  ++.                      .++++.+++.    +..++++.+||+||+||++|
T Consensus        79 ~~~~~~~i~-~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l  157 (250)
T PRK14266         79 VVELRKKVG-MVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI  157 (250)
T ss_pred             HHHHhhheE-EEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence               012345 899886322  111                      1223444542    23577889999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++ .+|+++|||||++|+|+.....+.+.+ ..+++  +.|+|++||+ .++..+||++++|++|++...+++++
T Consensus       158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~--~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~  231 (250)
T PRK14266        158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLI-HKLKE--DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ  231 (250)
T ss_pred             HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence            9999 999999999997777766555554544 55543  7899999999 88899999999999999998887643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=5.3e-35  Score=225.29  Aligned_cols=139  Identities=20%  Similarity=0.187  Sum_probs=109.6

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCC------C
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSA------T   75 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~------~   75 (185)
                      ++++++||++++|++++|+||||||||||+|+|        |.+.+              ...++ |+||++.      .
T Consensus        14 ~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~   92 (182)
T cd03215          14 GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA-YVPEDRKREGLVLD   92 (182)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE-EecCCcccCcccCC
Confidence            389999999999999999999999999999999        43321              22345 8888731      2


Q ss_pred             cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEE
Q psy5297          76 ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLF  154 (185)
Q Consensus        76 ~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii  154 (185)
                      .++.+++....           .||+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+++ .+.|+|+
T Consensus        93 ~t~~e~l~~~~-----------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~~tiii  159 (182)
T cd03215          93 LSVAENIALSS-----------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI-RELAD-AGKAVLL  159 (182)
T ss_pred             CcHHHHHHHHh-----------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEE
Confidence            33444432110           1999999999999999 999999999997777776666555544 56655 4899999


Q ss_pred             ecCh-hHHHHhhccccceeeeeE
Q psy5297         155 ATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       155 ~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      +||+ .++.++||++++|++|++
T Consensus       160 ~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         160 ISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             EeCCHHHHHHhCCEEEEecCCcC
Confidence            9999 788999999999999874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=100.00  E-value=1.8e-34  Score=226.21  Aligned_cols=157  Identities=43%  Similarity=0.798  Sum_probs=141.0

Q ss_pred             EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcC
Q psy5297           8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG   87 (185)
Q Consensus         8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~   87 (185)
                      +++++||+++.. .++++++|++|++++|++++|+||||+||||++|+++.+.+++++|+|+|+....++++++++..++
T Consensus         2 i~~~~hpll~~~-~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~   80 (204)
T cd03282           2 IRDSRHPILDRD-KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLS   80 (204)
T ss_pred             cccccCCeEecc-CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecC
Confidence            578999999863 3568999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297          88 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR  166 (185)
Q Consensus        88 l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d  166 (185)
                      ..+...+..++||.|++|+..+.+.+.+|+++|+|||++||++.|+..+.+.+++.+.+ .+.++|++||+.++.+.+.
T Consensus        81 ~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~  158 (204)
T cd03282          81 NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILG  158 (204)
T ss_pred             CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhh
Confidence            98889999999999999987776656899999999999999999999888877788887 5999999999966555443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=2.1e-35  Score=225.81  Aligned_cols=136  Identities=21%  Similarity=0.278  Sum_probs=108.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCCCCc---chh
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDSATI---SVV   79 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~~~~---~~~   79 (185)
                      +.+++++||++++|++++|+||||||||||+|+|        |.+.+            ...++ |+||++..+   ++.
T Consensus        13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~   91 (173)
T cd03230          13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG-YLPEEPSLYENLTVR   91 (173)
T ss_pred             eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEE-EEecCCccccCCcHH
Confidence            4699999999999999999999999999999999        32211            22344 888876322   333


Q ss_pred             hHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          80 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        80 ~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +++.               ||+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ +.+++ .|.|+|++||+
T Consensus        92 ~~~~---------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tiii~th~  154 (173)
T cd03230          92 ENLK---------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL-RELKK-EGKTILLSSHI  154 (173)
T ss_pred             HHhh---------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHH-CCCEEEEECCC
Confidence            3321               999999999999999 999999999997777666655555544 66665 48999999999


Q ss_pred             -hHHHHhhccccceeeeeE
Q psy5297         159 -HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       159 -~~~~~~~d~~~~l~~g~i  176 (185)
                       .++..+||++++|++|++
T Consensus       155 ~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         155 LEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             HHHHHHhCCEEEEEeCCCC
Confidence             777789999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=2.2e-35  Score=235.91  Aligned_cols=156  Identities=14%  Similarity=0.127  Sum_probs=117.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCc--chh
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATI--SVV   79 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~--~~~   79 (185)
                      +++++|+||++++|++++|+||||||||||+++|        |.+.+             ...++ |+||++..+  ++.
T Consensus        16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~   94 (238)
T cd03249          16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG-LVSQEPVLFDGTIA   94 (238)
T ss_pred             ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE-EECCchhhhhhhHH
Confidence            4699999999999999999999999999999999        32211             23355 899876221  221


Q ss_pred             hH---------------HHhhc-----------CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          80 DQ---------------IFTRV-----------GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        80 ~~---------------~l~~~-----------~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                      ++               .++..           ++....++++.+||+||+||++||+++ .+|+++|||||++|+|+..
T Consensus        95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~  174 (238)
T cd03249          95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES  174 (238)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            11               11111           223345667889999999999999999 9999999999977766666


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ...+.+.+ ..++  .+.++|++||+ .++. .||++++|++|++++.++.+
T Consensus       175 ~~~l~~~l-~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~  222 (238)
T cd03249         175 EKLVQEAL-DRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHD  222 (238)
T ss_pred             HHHHHHHH-HHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHH
Confidence            55554543 4444  48999999999 5554 89999999999998877653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=4e-35  Score=222.44  Aligned_cols=146  Identities=14%  Similarity=0.140  Sum_probs=104.5

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCC-C-CCcchhhHHHhhcCcccccccCcCccH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCD-S-ATISVVDQIFTRVGAADSQYRGISTFM  100 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~lS  100 (185)
                      +++++++||++++|++++|+||||||||||+|+|.... ....|...... . ...+..+..-..++.       +.+||
T Consensus        13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qLS   84 (163)
T cd03216          13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSFASPRDARRAGIAM-------VYQLS   84 (163)
T ss_pred             eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCcCCHHHHHhcCeEE-------EEecC
Confidence            57999999999999999999999999999999993221 11122111111 0 111111111111111       12399


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      +||+||+++|+++ .+|+++|||||++|+|......+...+ +.+++ .+.|+|++||+ .++.++||++++|++|++++
T Consensus        85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216          85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI-RRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999 999999999997776665555554543 56655 48999999999 67889999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.4e-36  Score=228.50  Aligned_cols=172  Identities=16%  Similarity=0.183  Sum_probs=136.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH--------HHHH------------HHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG--------VSVF------------LAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG--------~i~~------------~~~~   65 (185)
                      ++++++...|     +.+.+++|+|+++++|.++.++|||||||||||-+++        .+++            +++.
T Consensus         2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~   76 (252)
T COG4604           2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK   76 (252)
T ss_pred             eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH
Confidence            3455555444     4578999999999999999999999999999999993        2221            1111


Q ss_pred             Cc---------------------eecCCCCCcc-----hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297          66 GC---------------------FVPCDSATIS-----VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSL  118 (185)
Q Consensus        66 g~---------------------~v~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l  118 (185)
                      .+                     -.|-....++     .+++.++.+++++..++...+||||||||+.+|..+ ++.+.
T Consensus        77 lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy  156 (252)
T COG4604          77 LSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY  156 (252)
T ss_pred             HHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE
Confidence            10                     1222221111     477889999999999999999999999999999999 99999


Q ss_pred             EEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         119 VIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       119 lllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      ++||||   ++.+|..-..+.+  +++++++.|+||+++-|| +.+..++|+++.|++|+++.+|+++++
T Consensus       157 vlLDEP---LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ei  223 (252)
T COG4604         157 VLLDEP---LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI  223 (252)
T ss_pred             EEecCc---ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHh
Confidence            999999   6667655444332  577777789999999999 999999999999999999999999874

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=2.4e-35  Score=230.74  Aligned_cols=146  Identities=16%  Similarity=0.180  Sum_probs=115.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI-   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~-   76 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+                 ...++ |++|++..+ 
T Consensus        11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~   89 (206)
T TIGR03608        11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG-YLFQNFALIE   89 (206)
T ss_pred             EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee-EEecchhhcc
Confidence            5799999999999999999999999999999999        32211                 12345 888876221 


Q ss_pred             --c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          77 --S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        77 --~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                        +                     .+.++++.+++.+..++++.+||+||+||++||+++ .+|+++|||||++|+|+..
T Consensus        90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~  169 (206)
T TIGR03608        90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN  169 (206)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence              1                     133466778888888999999999999999999999 9999999999977776666


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF  171 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l  171 (185)
                      ...+.+.+ +.+.+ .+.|+|++||+.+...+||++++|
T Consensus       170 ~~~l~~~l-~~~~~-~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       170 RDEVLDLL-LELND-EGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             HHHHHHHH-HHHHh-cCCEEEEEeCCHHHHhhcCEEEeC
Confidence            55555543 56655 489999999995556789998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=7.7e-36  Score=259.36  Aligned_cols=160  Identities=15%  Similarity=0.118  Sum_probs=123.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhC------ceecCCC-----------CCc-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIG------CFVPCDS-----------ATI-   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g------~~v~~~~-----------~~~-   76 (185)
                      +++|+|+||++++|++++|+||||||||||+|+|        |.|.+.....      .+.++..           ... 
T Consensus        37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~  116 (549)
T PRK13545         37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT  116 (549)
T ss_pred             ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence            4699999999999999999999999999999999        3333221110      0111100           000 


Q ss_pred             -----chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC
Q psy5297          77 -----SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP  150 (185)
Q Consensus        77 -----~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~  150 (185)
                           ..+..+++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.
T Consensus       117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL-~el~~-~G~  194 (549)
T PRK13545        117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM-NEFKE-QGK  194 (549)
T ss_pred             HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH-HHHHh-CCC
Confidence                 0133567778888888999999999999999999999 999999999997776665555555543 55655 589


Q ss_pred             eEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         151 FTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       151 ~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||++||+ .++..+||++++|++|++...+++++
T Consensus       195 TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~e  229 (549)
T PRK13545        195 TIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKE  229 (549)
T ss_pred             EEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999 77889999999999999998886543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=4.6e-35  Score=227.88  Aligned_cols=165  Identities=18%  Similarity=0.238  Sum_probs=122.7

Q ss_pred             ceEEEcccCCceeeec-CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH--H-----------------HH
Q psy5297           4 GTLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS--V-----------------FL   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~-~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i--~-----------------~~   62 (185)
                      +.++++++...|-... ...+.+++|+||++++|++++|+||||||||||+|+| |..  .                 +.
T Consensus         2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~   81 (194)
T cd03213           2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR   81 (194)
T ss_pred             cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence            4567777765552110 0125799999999999999999999999999999999 432  1                 12


Q ss_pred             HhhCceecCCCCC---cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          63 AQIGCFVPCDSAT---ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        63 ~~~g~~v~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                      ..++ |+||++..   +++.+++....        ...+||+||+||++||+++ .+|+++|||||++|+|......+.+
T Consensus        82 ~~i~-~~~q~~~~~~~~t~~~~i~~~~--------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~  152 (194)
T cd03213          82 KIIG-YVPQDDILHPTLTVRETLMFAA--------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS  152 (194)
T ss_pred             heEE-EccCcccCCCCCcHHHHHHHHH--------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence            3345 88888632   34444443111        1128999999999999999 9999999999977777666555555


Q ss_pred             HHHHHHHhcCCCeEEEecCh-h-HHHHhhccccceeeeeEEEE
Q psy5297         139 SIARELASNRQPFTLFATHF-H-EIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~g~i~~~  179 (185)
                      .+ +.+++ .+.|+|++||+ . ++.++||++++|++|++...
T Consensus       153 ~l-~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~  193 (194)
T cd03213         153 LL-RRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF  193 (194)
T ss_pred             HH-HHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence            44 56665 48999999998 4 57789999999999998764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.7e-35  Score=237.26  Aligned_cols=170  Identities=14%  Similarity=0.127  Sum_probs=127.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------H----------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------F----------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------~----------   61 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||+|+| |...            +          
T Consensus        16 ~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~   90 (265)
T PRK14252         16 KSEVNKLNFYY-----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP   90 (265)
T ss_pred             eEEEEEEEEEE-----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence            45566665444     235799999999999999999999999999999999 3221            1          


Q ss_pred             -------HHhhCceecCCCCCc--chh----------------------hHHHhhcCc----ccccccCcCccHHHHHHH
Q psy5297          62 -------LAQIGCFVPCDSATI--SVV----------------------DQIFTRVGA----ADSQYRGISTFMMEMKET  106 (185)
Q Consensus        62 -------~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l----~~~~~~~~~~lS~g~~q~  106 (185)
                             ...++ |+||++..+  ++.                      .++++.+++    .+..++.+.+||+||+||
T Consensus        91 ~~~~~~~~~~i~-~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr  169 (265)
T PRK14252         91 EVDPIEVRMRIS-MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR  169 (265)
T ss_pred             ccCHHHHhccEE-EEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence                   11234 888875211  111                      122333443    234567889999999999


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++||+++ .+|+++|||||++|+|......+.+.+ ..+++  +.|+|++||+ .++.++||++++|++|+++..++.+
T Consensus       170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~  245 (265)
T PRK14252        170 LCIARALATDPEILLFDEPTSALDPIATASIEELI-SDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATD  245 (265)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999 999999999997777665555554543 55554  5899999999 7788999999999999999887754

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-35  Score=256.14  Aligned_cols=158  Identities=13%  Similarity=0.108  Sum_probs=126.8

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------HhhCceecCCCC------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------------AQIGCFVPCDSA------   74 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------------~~~g~~v~~~~~------   74 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+.              ..++ |+||++.      
T Consensus       261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~-~~~q~~~~~~~~~  339 (491)
T PRK10982        261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA-LVTEERRSTGIYA  339 (491)
T ss_pred             CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE-EcCCchhhCCccc
Confidence            3589999999999999999999999999999999        443321              1244 8887631      


Q ss_pred             Ccc---------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          75 TIS---------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        75 ~~~---------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      .++                           .+..+++.+++. +..++++.+||+|||||++||+++ .+|+++||||||
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt  419 (491)
T PRK10982        340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT  419 (491)
T ss_pred             CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            011                           123345666774 467999999999999999999999 999999999998


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +|+|+.....+.+.+ +.+.+ .+.|||++||| .++..+||++++|++|+++..++.+
T Consensus       420 ~gLD~~~~~~~~~~l-~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        420 RGIDVGAKFEIYQLI-AELAK-KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             cccChhHHHHHHHHH-HHHHH-CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence            888777766666644 66766 58999999999 8888999999999999999877654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=1.1e-34  Score=222.68  Aligned_cols=141  Identities=13%  Similarity=0.117  Sum_probs=108.8

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCcchhhHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATISVVDQI   82 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~~~~~~~   82 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.            +...++ |+||++..++  ..+
T Consensus        15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~--~tv   91 (178)
T cd03247          15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLIS-VLNQRPYLFD--TTL   91 (178)
T ss_pred             ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEE-EEccCCeeec--ccH
Confidence            3699999999999999999999999999999999        3221            123345 8888764332  112


Q ss_pred             HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hH
Q psy5297          83 FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HE  160 (185)
Q Consensus        83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~  160 (185)
                      .+.+         +.+||+||+||++|||++ .+|+++|||||++|+|+.....+.+.+ ..+.  .+.|+|++||+ .+
T Consensus        92 ~~~i---------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~--~~~tii~~sh~~~~  159 (178)
T cd03247          92 RNNL---------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-FEVL--KDKTLIWITHHLTG  159 (178)
T ss_pred             HHhh---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecCHHH
Confidence            2111         789999999999999999 999999999997776665544444433 4553  37899999999 55


Q ss_pred             HHHhhccccceeeeeEEEE
Q psy5297         161 IALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       161 ~~~~~d~~~~l~~g~i~~~  179 (185)
                      + ..||++++|++|++.+.
T Consensus       160 ~-~~~d~~~~l~~g~i~~~  177 (178)
T cd03247         160 I-EHMDKILFLENGKIIMQ  177 (178)
T ss_pred             H-HhCCEEEEEECCEEEec
Confidence            5 57999999999999764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.3e-34  Score=217.36  Aligned_cols=171  Identities=15%  Similarity=0.125  Sum_probs=135.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------   60 (185)
                      +++++++...+-+.. +.-.||++|+|.+++||.++|+||+||||||||-++        |++.                
T Consensus         6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~   84 (228)
T COG4181           6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA   84 (228)
T ss_pred             eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence            455555544332211 234699999999999999999999999999999999        3332                


Q ss_pred             HH-HhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          61 FL-AQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        61 ~~-~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      ++ .++| ||||....++                        .+..+++.+|+.+.++.+|.+||||++||++|||++ .
T Consensus        85 ~R~~~vG-fVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~  163 (228)
T COG4181          85 LRARHVG-FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG  163 (228)
T ss_pred             hhcccee-EEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC
Confidence            22 3456 9999763333                        366788999999999999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEE
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~  178 (185)
                      .|++++.||||-++|......+..++ =.++++.|.|.+++|||..++..|+|.+.|++|+++.
T Consensus       164 ~P~vLfADEPTGNLD~~Tg~~iaDLl-F~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         164 RPDVLFADEPTGNLDRATGDKIADLL-FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             CCCEEeccCCCCCcchhHHHHHHHHH-HHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence            99999999995555554445555544 3445558999999999999999999999999999864

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=3.8e-35  Score=232.59  Aligned_cols=163  Identities=17%  Similarity=0.184  Sum_probs=121.2

Q ss_pred             EEEcccCCceeeec-CC-ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-------------
Q psy5297           6 LVLNQCRHPIVELQ-GG-VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-------------   62 (185)
Q Consensus         6 ~~~~~~~~~~l~~~-~~-~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-------------   62 (185)
                      +++++++..|-... ++ +..+++|+||++++|++++|+||||||||||+|+|        |.|.+.             
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~   81 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP   81 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence            45666655442111 11 24799999999999999999999999999999999        433221             


Q ss_pred             --------HhhCceecCCCCCcc------------------------hhhHHHhhcCcccc-cccCcCccHHHHHHHHHH
Q psy5297          63 --------AQIGCFVPCDSATIS------------------------VVDQIFTRVGAADS-QYRGISTFMMEMKETATV  109 (185)
Q Consensus        63 --------~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~-~~~~~~~lS~g~~q~~~i  109 (185)
                              ..++ |+||++..++                        .+.++++.+++.+. .++++.+||+||+||++|
T Consensus        82 ~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l  160 (224)
T TIGR02324        82 REVLEVRRKTIG-YVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI  160 (224)
T ss_pred             HHHHHHHhcceE-EEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence                    1244 8998863221                        12345667777653 578899999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTF  171 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l  171 (185)
                      |+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .+.|+|++||+ ..+..+||+++.+
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       161 ARGFIADYPILLLDEPTASLDAANRQVVVELI-AEAKA-RGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHHhcceeEec
Confidence            9999 999999999997777666655555544 56655 58999999999 6667899998765

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=2.1e-35  Score=234.33  Aligned_cols=166  Identities=13%  Similarity=0.162  Sum_probs=122.7

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FL   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~   62 (185)
                      +.++++++...|-.  .++..+++++||++++|++++|+||||||||||+++|        |.+.             +.
T Consensus        10 ~~l~~~~l~~~~~~--~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248          10 GIVKFQNVTFAYPT--RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             ceEEEEEEEEEeCC--CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            45666666654411  0124699999999999999999999999999999999        3221             12


Q ss_pred             HhhCceecCCCCCc--ch------------------------hhHHHhhc--CcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          63 AQIGCFVPCDSATI--SV------------------------VDQIFTRV--GAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        63 ~~~g~~v~~~~~~~--~~------------------------~~~~l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      ..++ |+||++..+  ++                        +.++++.+  ++.+..++++.+||+||+||++||+++ 
T Consensus        88 ~~i~-~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~  166 (226)
T cd03248          88 SKVS-LVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI  166 (226)
T ss_pred             hhEE-EEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence            3355 888876221  11                        11233445  566677888999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      .+|+++|||||++|+|+.....+.+.+ ..+++  +.|+|++||+ .++ ..||++++|++|++
T Consensus       167 ~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~~sh~~~~~-~~~d~i~~l~~g~i  226 (226)
T cd03248         167 RNPQVLILDEATSALDAESEQQVQQAL-YDWPE--RRTVLVIAHRLSTV-ERADQILVLDGGRI  226 (226)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcC--CCEEEEEECCHHHH-HhCCEEEEecCCcC
Confidence            999999999997777666655555544 45543  5899999999 555 45999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.9e-35  Score=235.60  Aligned_cols=159  Identities=15%  Similarity=0.088  Sum_probs=123.0

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------------HHHhhCceecCCC
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------------FLAQIGCFVPCDS   73 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------------~~~~~g~~v~~~~   73 (185)
                      ++.+++|+||++++|++++|+||||||||||+|+| |...                           +...++ |+||++
T Consensus        20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~   98 (261)
T PRK14263         20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG-MVFQQP   98 (261)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceE-EEecCC
Confidence            46799999999999999999999999999999999 3221                           112244 888886


Q ss_pred             CC--cch--------------------hhHHHhhcCccc----ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297          74 AT--ISV--------------------VDQIFTRVGAAD----SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus        74 ~~--~~~--------------------~~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~  126 (185)
                      ..  .++                    +.++++.+++.+    ..++++.+||+||+||++|||++ .+|+++||||||+
T Consensus        99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPts  178 (261)
T PRK14263         99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS  178 (261)
T ss_pred             ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            32  222                    223455555532    33567889999999999999999 9999999999977


Q ss_pred             CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee--------eeeEEEEeccCC
Q psy5297         127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR--------NVHESKYLYHTN  184 (185)
Q Consensus       127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~--------~g~i~~~~~~~~  184 (185)
                      |+|+.....+.+.+ ..+.+  +.|+|++||+ .++.++||++++|+        +|+++..++.++
T Consensus       179 gLD~~~~~~l~~~l-~~~~~--~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~  242 (261)
T PRK14263        179 ALDPIATRRVEELM-VELKK--DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ  242 (261)
T ss_pred             cCCHHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence            77776666555544 55543  6899999999 77889999999995        899998887653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=8.5e-35  Score=227.43  Aligned_cols=147  Identities=17%  Similarity=0.191  Sum_probs=117.6

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCC---cc-
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSAT---IS-   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~---~~-   77 (185)
                      .+.+++|+||++++|++++|+|+||||||||+++|        |.+.            +..+++ |+||.+..   .+ 
T Consensus        12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv   90 (201)
T cd03231          12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL-YLGHAPGIKTTLSV   90 (201)
T ss_pred             CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheE-EeccccccCCCcCH
Confidence            35799999999999999999999999999999999        3332            123445 88876522   12 


Q ss_pred             --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297          78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR  142 (185)
Q Consensus        78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~  142 (185)
                                    .++++++.+++.+..++++.+||+|||||+++|+++ .+|+++|||||++|+|+.....+.+.+ .
T Consensus        91 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~  169 (201)
T cd03231          91 LENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM-A  169 (201)
T ss_pred             HHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-H
Confidence                          244567778888888899999999999999999999 999999999997777666655555544 5


Q ss_pred             HHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297         143 ELASNRQPFTLFATHF-HEIALLSRVIPTF  171 (185)
Q Consensus       143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l  171 (185)
                      .+++ .+.|+|++||+ .+....|++++.+
T Consensus       170 ~~~~-~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         170 GHCA-RGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHHh-CCCEEEEEecCchhhhhccceeEec
Confidence            5554 58899999998 8888899998765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.3e-35  Score=286.20  Aligned_cols=174  Identities=16%  Similarity=0.087  Sum_probs=140.3

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQ   64 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~   64 (185)
                      .++++++...|   .++.+.+++|+||++++||+++|+||||||||||+|+|        |.|.+            +.+
T Consensus      1937 ~L~v~nLsK~Y---~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257      1937 ILRLNELTKVY---SGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred             eEEEEEEEEEE---CCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence            45666665444   11135799999999999999999999999999999999        33322            334


Q ss_pred             hCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297          65 IGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV  119 (185)
Q Consensus        65 ~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll  119 (185)
                      +| |+||.+..+   +                     .++++++.+++.+..++++++||||||||+++|+|+ .+|+++
T Consensus      2014 IG-y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257      2014 MG-YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred             EE-EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            66 999986322   2                     133467778898889999999999999999999999 999999


Q ss_pred             EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||++|+|+.....+.+.+ +.+++ .|+|||++||+ +++.++|||+++|++|++.+.|++++
T Consensus      2093 LLDEPTsGLDp~sr~~l~~lL-~~l~~-~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257      2093 LLDEPTTGMDPQARRMLWNTI-VSIIR-EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred             EEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999998888777766665544 66665 48999999999 88999999999999999999987654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=8.4e-35  Score=223.45  Aligned_cols=138  Identities=20%  Similarity=0.271  Sum_probs=105.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------HHhhCceecCCCCCc---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------LAQIGCFVPCDSATI---   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~~~~g~~v~~~~~~~---   76 (185)
                      +.+++++||++++|++++|+||||||||||+|+|        |.+.+               ..+++ |+||.+..+   
T Consensus        13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~   91 (178)
T cd03229          13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG-MVFQDFALFPHL   91 (178)
T ss_pred             eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE-EEecCCccCCCC
Confidence            5799999999999999999999999999999999        32211               12234 777765322   


Q ss_pred             chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297          77 SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA  155 (185)
Q Consensus        77 ~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~  155 (185)
                      +..+++    ...         ||+||+||+++|+++ .+|+++|||||++|+|+.....+.+.+ +.++++.+.|+|++
T Consensus        92 t~~~~l----~~~---------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tiii~  157 (178)
T cd03229          92 TVLENI----ALG---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL-KSLQAQLGITVVLV  157 (178)
T ss_pred             CHHHhe----eec---------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEE
Confidence            222221    111         999999999999999 999999999997776665555554443 56665337899999


Q ss_pred             cCh-hHHHHhhccccceeeee
Q psy5297         156 THF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       156 tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      ||+ .++..+||++++|++|+
T Consensus       158 sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         158 THDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             eCCHHHHHHhcCEEEEEeCCC
Confidence            999 77777999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=8e-35  Score=226.12  Aligned_cols=164  Identities=15%  Similarity=0.183  Sum_probs=121.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------H---------HHHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------V---------FLAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------~---------~~~~~   65 (185)
                      .++++++...|-.. ++.+.+++|+||++++|++++|+||||||||||+|+| |..         .         +...+
T Consensus         3 ~l~~~~l~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i   81 (192)
T cd03232           3 VLTWKNLNYTVPVK-GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST   81 (192)
T ss_pred             EEEEeeeEEEecCC-CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence            46677776544210 0125799999999999999999999999999999999 321         1         12334


Q ss_pred             CceecCCCCC---cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHH
Q psy5297          66 GCFVPCDSAT---ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIA  141 (185)
Q Consensus        66 g~~v~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il  141 (185)
                      + |++|.+..   .++.+++.....        ..+||+||+||+++|+++ .+|+++|+|||++|+|......+.+. +
T Consensus        82 ~-~~~q~~~~~~~~tv~~~l~~~~~--------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~-l  151 (192)
T cd03232          82 G-YVEQQDVHSPNLTVREALRFSAL--------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF-L  151 (192)
T ss_pred             E-EecccCccccCCcHHHHHHHHHH--------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHH-H
Confidence            5 88887632   344554431100        119999999999999999 99999999999777766655555554 3


Q ss_pred             HHHHhcCCCeEEEecCh-h-HHHHhhccccceee-eeEEEEe
Q psy5297         142 RELASNRQPFTLFATHF-H-EIALLSRVIPTFRN-VHESKYL  180 (185)
Q Consensus       142 ~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~-g~i~~~~  180 (185)
                      +.+++ .+.|+|++||+ . ++...||++++|++ |++++.+
T Consensus       152 ~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         152 KKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             HHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            56665 58999999999 5 36889999999999 9997653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.1e-34  Score=227.12  Aligned_cols=170  Identities=15%  Similarity=0.102  Sum_probs=125.5

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------H------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------F------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------~------------   61 (185)
                      .+.++|+...|-.. .+++.+++|+||++++|++++|+||||||||||+++| |...          +            
T Consensus         3 ~~~~~~~~~~~~~~-~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~   81 (202)
T cd03233           3 TLSWRNISFTTGKG-RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY   81 (202)
T ss_pred             eEEEEccEEEeccC-CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence            45667776555332 2346799999999999999999999999999999999 3321          1            


Q ss_pred             HHhhCceecCCCCC---cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297          62 LAQIGCFVPCDSAT---ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA  137 (185)
Q Consensus        62 ~~~~g~~v~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~  137 (185)
                      ...++ |+||+...   +++.+++.......  .++++.+||+||+||++||+++ .+|+++|||||++|+|+.....+.
T Consensus        82 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~  158 (202)
T cd03233          82 PGEII-YVSEEDVHFPTLTVRETLDFALRCK--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL  158 (202)
T ss_pred             cceEE-EEecccccCCCCcHHHHHhhhhhhc--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH
Confidence            11244 88887632   34555543211111  6788899999999999999999 999999999997777776666555


Q ss_pred             HHHHHHHHhcCCCeEEE-ecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         138 CSIARELASNRQPFTLF-ATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       138 ~~il~~l~~~~~~~vii-~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      +.+ +.+.++.+.++++ ++|+ .++.++||++++|++|+++..
T Consensus       159 ~~l-~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~  201 (202)
T cd03233         159 KCI-RTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY  201 (202)
T ss_pred             HHH-HHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence            544 5665433566555 5566 788899999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=2.6e-35  Score=241.34  Aligned_cols=169  Identities=13%  Similarity=0.079  Sum_probs=122.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI   76 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~   76 (185)
                      .++++++...       .+.+++|+||++++|++++|+||||||||||+|+|        |.|.+...++ |+||.+..+
T Consensus        39 ~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~-yv~q~~~l~  110 (282)
T cd03291          39 NLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS-FSSQFSWIM  110 (282)
T ss_pred             eEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEE-EEeCccccc
Confidence            4556665431       25699999999999999999999999999999999        4444444456 888886322


Q ss_pred             --chhh--------------HHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297          77 --SVVD--------------QIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT  128 (185)
Q Consensus        77 --~~~~--------------~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~  128 (185)
                        ++.+              .++..+++.+.           .++++.+||+||+||++||+++ .+|+++|||||++|+
T Consensus       111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL  190 (282)
T cd03291         111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL  190 (282)
T ss_pred             ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence              2222              22233333321           2234579999999999999999 999999999996666


Q ss_pred             CcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297         129 STFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |+.....+...++..++  .+.|||++||+.+....||++++|++|+++..++++
T Consensus       191 D~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~  243 (282)
T cd03291         191 DVFTEKEIFESCVCKLM--ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFS  243 (282)
T ss_pred             CHHHHHHHHHHHHHHhh--CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHH
Confidence            55444434333334443  378999999994444689999999999999887654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=9.4e-35  Score=222.23  Aligned_cols=137  Identities=17%  Similarity=0.194  Sum_probs=106.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCcchhhH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATISVVDQ   81 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~~~~~~   81 (185)
                      +.+++|+||++++|++++|+||||||||||+++|        |.+.             +..+++ |++|++..++  ..
T Consensus        15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~--~t   91 (173)
T cd03246          15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFS--GS   91 (173)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE-EECCCCcccc--Cc
Confidence            4699999999999999999999999999999999        2221             122344 8888764332  12


Q ss_pred             HHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297          82 IFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE  160 (185)
Q Consensus        82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~  160 (185)
                      +.+.+            ||+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+++ .+.|+|++||+.+
T Consensus        92 v~~~l------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tii~~sh~~~  157 (173)
T cd03246          92 IAENI------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI-AALKA-AGATRIVIAHRPE  157 (173)
T ss_pred             HHHHC------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHH
Confidence            22211            999999999999999 999999999997777776666555544 66665 5899999999944


Q ss_pred             HHHhhccccceeeeeE
Q psy5297         161 IALLSRVIPTFRNVHE  176 (185)
Q Consensus       161 ~~~~~d~~~~l~~g~i  176 (185)
                      ....||++++|++|++
T Consensus       158 ~~~~~d~v~~l~~G~i  173 (173)
T cd03246         158 TLASADRILVLEDGRV  173 (173)
T ss_pred             HHHhCCEEEEEECCCC
Confidence            4468999999999874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=1.9e-35  Score=231.30  Aligned_cols=150  Identities=12%  Similarity=0.159  Sum_probs=112.0

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc--chh-------------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI--SVV-------------   79 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~--~~~-------------   79 (185)
                      +.+++++||++++|++++|+||||||||||+|+|        |.|.+.++++ |+||++..+  ++.             
T Consensus        18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~-~~~q~~~l~~~t~~enl~~~~~~~~~~   96 (204)
T cd03250          18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA-YVSQEPWIQNGTIRENILFGKPFDEER   96 (204)
T ss_pred             cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEE-EEecCchhccCcHHHHhccCCCcCHHH
Confidence            3699999999999999999999999999999999        5555555566 999986221  211             


Q ss_pred             -hHHHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297          80 -DQIFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS  146 (185)
Q Consensus        80 -~~~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~  146 (185)
                       .+.++.+++           ....++++.+||+||+||++|||++ .+|+++|||||++|+|+.....+.+.++..+.+
T Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~  176 (204)
T cd03250          97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL  176 (204)
T ss_pred             HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc
Confidence             122222232           2234566789999999999999999 999999999996666554444444433344444


Q ss_pred             cCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297         147 NRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       147 ~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                       .+.|||++||+ ..+.. ||++++|++|+
T Consensus       177 -~~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         177 -NNKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             -CCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence             48999999999 55555 99999999875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.3e-34  Score=226.85  Aligned_cols=158  Identities=13%  Similarity=0.141  Sum_probs=120.2

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~   65 (185)
                      +++++++..+     +.+.+++|+||++++|++++|+||||||||||+++|        |.|.            +..++
T Consensus         2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~   76 (204)
T PRK13538          2 LEARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL   76 (204)
T ss_pred             eEEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe
Confidence            4555555433     235799999999999999999999999999999999        3332            12345


Q ss_pred             CceecCCCCCc---c------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297          66 GCFVPCDSATI---S------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE  123 (185)
Q Consensus        66 g~~v~~~~~~~---~------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE  123 (185)
                      + |++|....+   +                  .++++++.+++.+..++++++||+||+||++||+++ .+|+++||||
T Consensus        77 ~-~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  155 (204)
T PRK13538         77 L-YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE  155 (204)
T ss_pred             E-EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            5 777765221   1                  234567778888888999999999999999999999 9999999999


Q ss_pred             CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297         124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTF  171 (185)
Q Consensus       124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l  171 (185)
                      ||+|+|+.....+.+.+ +.+++ .+.|+|++||+ .++.+..+|++++
T Consensus       156 Pt~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        156 PFTAIDKQGVARLEALL-AQHAE-QGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CCccCCHHHHHHHHHHH-HHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence            97776666655555543 55555 58899999999 7777766776655

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=5.3e-35  Score=255.72  Aligned_cols=158  Identities=18%  Similarity=0.244  Sum_probs=123.1

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH--------H--------------HHHhhCceecCCCCC---
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS--------V--------------FLAQIGCFVPCDSAT---   75 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i--------~--------------~~~~~g~~v~~~~~~---   75 (185)
                      ++.+++|+||++++|++++|+||||||||||+|+| |..        .              ...+++ |+||+...   
T Consensus       272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~  350 (490)
T PRK10938        272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG-YVSSSLHLDYR  350 (490)
T ss_pred             CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce-EECHHHHhhcc
Confidence            35699999999999999999999999999999999 321        1              122345 77775310   


Q ss_pred             --cc-------------------------hhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297          76 --IS-------------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus        76 --~~-------------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~  126 (185)
                        .+                         .++++++.+++.+ ..++++++||+|||||++||+++ .+|+++||||||+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~  430 (490)
T PRK10938        351 VSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQ  430 (490)
T ss_pred             cCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence              00                         1345667788886 78899999999999999999999 9999999999977


Q ss_pred             CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHH-hhccccceeeeeEEEEec
Q psy5297         127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIAL-LSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~-~~d~~~~l~~g~i~~~~~  181 (185)
                      |+|+.....+.+.+ ..++++.+.|||++||+ .++.+ +||++++|++|+++....
T Consensus       431 gLD~~~~~~l~~~L-~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~  486 (490)
T PRK10938        431 GLDPLNRQLVRRFV-DVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ  486 (490)
T ss_pred             cCCHHHHHHHHHHH-HHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence            77766666555544 66665324579999999 67766 599999999999877654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=237.05  Aligned_cols=158  Identities=17%  Similarity=0.148  Sum_probs=127.5

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-------HH------------HHhhCceecCCC----CCcc--
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-------VF------------LAQIGCFVPCDS----ATIS--   77 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-------~~------------~~~~g~~v~~~~----~~~~--   77 (185)
                      .++.|+||+|++|++++++|||||||||+||++ |.+       .+            .++++ +|.-..    +.++  
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~-~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG-LVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHH-HHhhhhheeeeechhh
Confidence            489999999999999999999999999999999 322       11            12222 221111    1111  


Q ss_pred             -------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297          78 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA  137 (185)
Q Consensus        78 -------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~  137 (185)
                                         +.+.+.+.+++++.++.++..||.|||+|+.+|++| ++|++++|||||-|+|....+.+.
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir  196 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR  196 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence                               233445667888899999999999999999999999 999999999998888888777777


Q ss_pred             HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +.+ +...+++++||+++||+ .+++++|+|+++|+.|+++++|+.+
T Consensus       197 ~Fl-ke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~  242 (325)
T COG4586         197 EFL-KEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA  242 (325)
T ss_pred             HHH-HHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHH
Confidence            755 67776689999999999 9999999999999999999987654

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-35  Score=231.69  Aligned_cols=159  Identities=19%  Similarity=0.234  Sum_probs=127.5

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH--------------HHHHhhCceecCCC-----
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS--------------VFLAQIGCFVPCDS-----   73 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i--------------~~~~~~g~~v~~~~-----   73 (185)
                      +++.+|+|+|++|++||.++|+|||||||||||+++        |.+              .++.++| +|...-     
T Consensus        42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG-~vS~~L~~~~~  120 (257)
T COG1119          42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG-LVSSELHERFR  120 (257)
T ss_pred             CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC-ccCHHHHhhcc
Confidence            568999999999999999999999999999999999        111              2344555 433210     


Q ss_pred             --------------------------CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297          74 --------------------------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus        74 --------------------------~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~  126 (185)
                                                .....+..+++.+++.+..+++..+||.|||||+.||||+ .+|+++|||||++
T Consensus       121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~  200 (257)
T COG1119         121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ  200 (257)
T ss_pred             cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence                                      1111466788999999999999999999999999999999 9999999999977


Q ss_pred             CCCcCChhHHHHHHHHHHHh-cCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         127 GTSTFDGFGMACSIARELAS-NRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       127 g~~~~d~~~~~~~il~~l~~-~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      |+|......+.+.+ ..+.. ..+.++|+|||. +++....+++..+++|+++..|.
T Consensus       201 GLDl~~re~ll~~l-~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         201 GLDLIAREQLLNRL-EELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             cCChHHHHHHHHHH-HHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            77666655555544 45543 247889999998 88999899999999999988763

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=2.3e-34  Score=225.66  Aligned_cols=167  Identities=14%  Similarity=0.138  Sum_probs=124.1

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------H
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------F   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~   61 (185)
                      .+.++++++...|-   +..+.+++|+||++++|++++|+||||||||||+|+|        |.+.             +
T Consensus         4 ~~~l~~~~l~~~~~---~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~   80 (207)
T cd03369           4 HGEIEVENLSVRYA---PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL   80 (207)
T ss_pred             CCeEEEEEEEEEeC---CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence            45677777765441   1224699999999999999999999999999999999        3221             1


Q ss_pred             HHhhCceecCCCCCc--chhhHH-----------HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Q psy5297          62 LAQIGCFVPCDSATI--SVVDQI-----------FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG  127 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~--~~~~~~-----------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g  127 (185)
                      ..+++ |+||++..+  ++.+++           .+.++    .++++.+||+||+||+++||++ .+|+++|||||++|
T Consensus        81 ~~~i~-~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  155 (207)
T cd03369          81 RSSLT-IIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS  155 (207)
T ss_pred             HhhEE-EEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence            23455 999987322  333222           11111    4677899999999999999999 99999999999777


Q ss_pred             CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      +|+.....+.+.+ ..+.  .+.|+|++||+ .++. .||++++|++|++...++
T Consensus       156 LD~~~~~~l~~~l-~~~~--~~~tiii~th~~~~~~-~~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         156 IDYATDALIQKTI-REEF--TNSTILTIAHRLRTII-DYDKILVMDAGEVKEYDH  206 (207)
T ss_pred             CCHHHHHHHHHHH-HHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEecCC
Confidence            6666555444433 4443  38899999999 5554 499999999999987765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-35  Score=226.57  Aligned_cols=163  Identities=17%  Similarity=0.128  Sum_probs=129.4

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCC---CCcc
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDS---ATIS   77 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~---~~~~   77 (185)
                      .++.+++++||++.+||+.+|+||||||||||||.+        |.+.+            +++.-+.+||..   +.|+
T Consensus        12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt   91 (259)
T COG4559          12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT   91 (259)
T ss_pred             ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence            457899999999999999999999999999999999        23222            122222455543   1111


Q ss_pred             -----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C------CCeEEEEeCCCCC
Q psy5297          78 -----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T------ENSLVIIDELGRG  127 (185)
Q Consensus        78 -----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~------~p~llllDEP~~g  127 (185)
                                             ++..+++..++..+..+...+||||+|||+.+||.+ +      +++.++|||||+.
T Consensus        92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa  171 (259)
T COG4559          92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA  171 (259)
T ss_pred             HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence                                   366778889999999999999999999999999986 2      4569999999666


Q ss_pred             CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      +|........+. .+.+.+ .|..|+.+-|| +..+.+|||+++|++||+++.|.++++
T Consensus       172 LDi~HQ~~tl~l-aR~la~-~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v  228 (259)
T COG4559         172 LDIAHQHHTLRL-ARQLAR-EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV  228 (259)
T ss_pred             cchHHHHHHHHH-HHHHHh-cCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence            666665555553 367776 58999999999 888899999999999999999988763

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-35  Score=237.18  Aligned_cols=155  Identities=20%  Similarity=0.191  Sum_probs=132.1

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCcc----
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATIS----   77 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~~----   77 (185)
                      -+++|+.+.-.+++|.|++|||||||+|+|        |.|.+                 ...+| ||||+...|+    
T Consensus        15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriG-YVFQDARLFpH~tV   93 (352)
T COG4148          15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIG-YVFQDARLFPHYTV   93 (352)
T ss_pred             EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheee-eEeeccccccceEE
Confidence            468888876699999999999999999999        33321                 35677 9999985544    


Q ss_pred             --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--
Q psy5297          78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--  140 (185)
Q Consensus        78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--  140 (185)
                                    -++++...+|+++.+++.|.+||||+|||++|+||+ +.|+++|||||   ++.+|.....+.+  
T Consensus        94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP---LaSLD~~RK~Eilpy  170 (352)
T COG4148          94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP---LASLDLPRKREILPY  170 (352)
T ss_pred             ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc---hhhcccchhhHHHHH
Confidence                          367888899999999999999999999999999999 99999999999   6666655444443  


Q ss_pred             HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         141 ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       141 l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      ++++.++.+..|+++||. .|++++||++++|++|++.+.|..+++
T Consensus       171 lERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v  216 (352)
T COG4148         171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV  216 (352)
T ss_pred             HHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence            689988889999999998 999999999999999999999977653

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4.9e-35  Score=259.52  Aligned_cols=171  Identities=15%  Similarity=0.097  Sum_probs=129.6

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceec
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVP   70 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~   70 (185)
                      |.++.++++|+...|-    +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+.  ..++ |+|
T Consensus         2 ~~~~~l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~-~v~   76 (556)
T PRK11819          2 MAQYIYTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG-YLP   76 (556)
T ss_pred             cccEEEEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEe
Confidence            5677888888876551    136799999999999999999999999999999999        554442  2355 999


Q ss_pred             CCCCC---cchhhHH---------------------------------------------------------HhhcCccc
Q psy5297          71 CDSAT---ISVVDQI---------------------------------------------------------FTRVGAAD   90 (185)
Q Consensus        71 ~~~~~---~~~~~~~---------------------------------------------------------l~~~~l~~   90 (185)
                      |++..   +++.+++                                                         ++.+++. 
T Consensus        77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-  155 (556)
T PRK11819         77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-  155 (556)
T ss_pred             cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-
Confidence            98632   2322222                                                         2233443 


Q ss_pred             ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccc
Q psy5297          91 SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVI  168 (185)
Q Consensus        91 ~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~  168 (185)
                      ..++++++||+|||||++||+++ .+|+++|||||   |+.+|.....+.. +.+++ .+.|||++||+ .++..+||++
T Consensus       156 ~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEP---t~~LD~~~~~~l~-~~L~~-~~~tviiisHd~~~~~~~~d~i  230 (556)
T PRK11819        156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP---TNHLDAESVAWLE-QFLHD-YPGTVVAVTHDRYFLDNVAGWI  230 (556)
T ss_pred             cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCC---CCcCChHHHHHHH-HHHHh-CCCeEEEEeCCHHHHHhhcCeE
Confidence            25788999999999999999999 99999999999   5555555555432 45554 34699999999 7888999999


Q ss_pred             cceeeeeEE-EEecc
Q psy5297         169 PTFRNVHES-KYLYH  182 (185)
Q Consensus       169 ~~l~~g~i~-~~~~~  182 (185)
                      ++|++|+++ +.++.
T Consensus       231 ~~l~~g~i~~~~g~~  245 (556)
T PRK11819        231 LELDRGRGIPWEGNY  245 (556)
T ss_pred             EEEeCCEEEEecCCH
Confidence            999999986 55543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=7.5e-35  Score=235.68  Aligned_cols=172  Identities=10%  Similarity=0.044  Sum_probs=123.5

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------H
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------L   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~   62 (185)
                      +.++++++...|   .+..+.+++|+||++++|++++|+|+||||||||+|+|        |.+.+             .
T Consensus        18 ~~i~~~~l~~~~---~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          18 GEIKIHDLCVRY---ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             ceEEEEEEEEEe---CCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence            346666665433   11124699999999999999999999999999999999        33221             2


Q ss_pred             HhhCceecCCCCCcc--h--------------hhHHHhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          63 AQIGCFVPCDSATIS--V--------------VDQIFTRVG-----------AADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        63 ~~~g~~v~~~~~~~~--~--------------~~~~l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      ..++ |+||++..++  +              +..+++..+           ++...++++.+||+||+||+++||++ .
T Consensus        95 ~~i~-~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  173 (257)
T cd03288          95 SRLS-IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR  173 (257)
T ss_pred             hhEE-EECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence            3445 8998763221  0              112222223           33334556789999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +|+++||||||+|+|+.....+.+.+ ..+.  .+.|+|++||+ ..+. .||++++|++|+++..++++
T Consensus       174 ~p~llllDEPt~gLD~~~~~~l~~~l-~~~~--~~~tiii~sh~~~~~~-~~dri~~l~~G~i~~~g~~~  239 (257)
T cd03288         174 KSSILIMDEATASIDMATENILQKVV-MTAF--ADRTVVTIAHRVSTIL-DADLVLVLSRGILVECDTPE  239 (257)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHH-HHhc--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEeCCHH
Confidence            99999999997776665544443433 4443  37999999999 5554 59999999999999887754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1.5e-34  Score=230.73  Aligned_cols=156  Identities=17%  Similarity=0.181  Sum_probs=116.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCc--chh
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATI--SVV   79 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~--~~~   79 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+             ...++ |+||++..+  ++.
T Consensus        14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~   92 (236)
T cd03253          14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG-VVPQDTVLFNDTIG   92 (236)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE-EECCCChhhcchHH
Confidence            5699999999999999999999999999999999        33221             22355 888886322  221


Q ss_pred             hH---------------HHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          80 DQ---------------IFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        80 ~~---------------~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                      ++               .+...++           +...++++.+||+||+||++||+++ .+|+++||||||+|+|+..
T Consensus        93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~  172 (236)
T cd03253          93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT  172 (236)
T ss_pred             HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            11               1112222           2234556789999999999999999 9999999999977766665


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ...+.+.+ ..+++  +.|+|++||+ .++ ..||++++|++|++...++.+
T Consensus       173 ~~~l~~~l-~~~~~--~~tiii~sh~~~~~-~~~d~~~~l~~g~i~~~~~~~  220 (236)
T cd03253         173 EREIQAAL-RDVSK--GRTTIVIAHRLSTI-VNADKIIVLKDGRIVERGTHE  220 (236)
T ss_pred             HHHHHHHH-HHhcC--CCEEEEEcCCHHHH-HhCCEEEEEECCEEEeeCCHH
Confidence            55555544 55543  8899999999 555 459999999999998877653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.8e-35  Score=226.07  Aligned_cols=176  Identities=19%  Similarity=0.193  Sum_probs=143.6

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |.+..+++.++...|     ++..+++|+||++.+||.-+|+|||||||||+|.+|        |.+.+           
T Consensus         1 ~~~~iL~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e   75 (249)
T COG4674           1 MNPIILYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPE   75 (249)
T ss_pred             CCCceEEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCH
Confidence            445567777766544     446799999999999999999999999999999999        33322           


Q ss_pred             ----HHhhCceecCCCCCc---c-----------------------------hhhHHHhhcCcccccccCcCccHHHHHH
Q psy5297          62 ----LAQIGCFVPCDSATI---S-----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKE  105 (185)
Q Consensus        62 ----~~~~g~~v~~~~~~~---~-----------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q  105 (185)
                          +..+| --||.+..+   +                             +++++++..|+.+..++..+.||.||||
T Consensus        76 ~~IAr~GIG-RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ  154 (249)
T COG4674          76 HRIARAGIG-RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ  154 (249)
T ss_pred             HHHHHhccC-ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence                12233 445544211   1                             4778889999999999999999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |+.|...+ ++|+++++|||.+|++..+.....+++ +.++.  .++|+++.|| ..+.++++++.+|+.|.+.++|+.+
T Consensus       155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl-~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld  231 (249)
T COG4674         155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL-KSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD  231 (249)
T ss_pred             hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHH-HHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence            99999999 999999999999998887777666654 77775  7899999999 8889999999999999999999876


Q ss_pred             CC
Q psy5297         184 NV  185 (185)
Q Consensus       184 ~~  185 (185)
                      ++
T Consensus       232 ~v  233 (249)
T COG4674         232 EV  233 (249)
T ss_pred             Hh
Confidence            53

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=5.4e-35  Score=235.34  Aligned_cols=149  Identities=15%  Similarity=0.143  Sum_probs=116.4

Q ss_pred             eeeceEEEeeC-----CceeEEEEccCCCcHHHHHHHH--------HHHHHHH-hhCceecCCCC---Ccch--------
Q psy5297          24 YIPNDVYFKSG-----EVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA-QIGCFVPCDSA---TISV--------   78 (185)
Q Consensus        24 ~il~~isl~i~-----~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~-~~g~~v~~~~~---~~~~--------   78 (185)
                      ..++|++|++.     +|++++|+||||||||||+|+|        |.+.+.. .++ |+||...   ..++        
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~-~~~q~~~~~~~~tv~e~l~~~~   86 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YKPQYIKADYEGTVRDLLSSIT   86 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEE-EecccccCCCCCCHHHHHHHHh
Confidence            36677777775     7999999999999999999999        5554443 445 8888752   1121        


Q ss_pred             ---------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC
Q psy5297          79 ---------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNR  148 (185)
Q Consensus        79 ---------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~  148 (185)
                               ..++++.+++.+..++++++||+||+||++||+++ .+|+++|||||++++|+.....+.+.+ ..+.++.
T Consensus        87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~  165 (246)
T cd03237          87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI-RRFAENN  165 (246)
T ss_pred             hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhc
Confidence                     23456777888888999999999999999999999 999999999997776666555555544 5555435


Q ss_pred             CCeEEEecCh-hHHHHhhccccceeee
Q psy5297         149 QPFTLFATHF-HEIALLSRVIPTFRNV  174 (185)
Q Consensus       149 ~~~vii~tH~-~~~~~~~d~~~~l~~g  174 (185)
                      +.|||++||+ .++..+||++++|+++
T Consensus       166 ~~tiiivsHd~~~~~~~~d~i~~l~~~  192 (246)
T cd03237         166 EKTAFVVEHDIIMIDYLADRLIVFEGE  192 (246)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence            8999999999 7778899999999654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=2.7e-34  Score=224.47  Aligned_cols=148  Identities=20%  Similarity=0.134  Sum_probs=113.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------HH--------------HHhhCceecCCCCCcc-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------VF--------------LAQIGCFVPCDSATIS-   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------~~--------------~~~~g~~v~~~~~~~~-   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+| |..         .+              ...++ |+||.+..++ 
T Consensus        13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~   91 (200)
T cd03217          13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF-LAFQYPPEIPG   91 (200)
T ss_pred             EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE-EeecChhhccC
Confidence            5799999999999999999999999999999999 331         11              01134 7888763322 


Q ss_pred             -hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297          78 -VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA  155 (185)
Q Consensus        78 -~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~  155 (185)
                       .+.+.+         ++...+||+||+||+++|+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .+.|+|++
T Consensus        92 ~~~~~~l---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L-~~~~~-~~~tiii~  160 (200)
T cd03217          92 VKNADFL---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NKLRE-EGKSVLII  160 (200)
T ss_pred             ccHHHHH---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHH-CCCEEEEE
Confidence             122222         333468999999999999999 999999999997776665555554443 56655 48999999


Q ss_pred             cCh-hHHHH-hhccccceeeeeEEEEecc
Q psy5297         156 THF-HEIAL-LSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       156 tH~-~~~~~-~~d~~~~l~~g~i~~~~~~  182 (185)
                      ||+ ..+.+ +||++++|++|++...+..
T Consensus       161 sh~~~~~~~~~~d~i~~l~~G~i~~~~~~  189 (200)
T cd03217         161 THYQRLLDYIKPDRVHVLYDGRIVKSGDK  189 (200)
T ss_pred             ecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence            999 65555 7999999999999888743

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=7.7e-35  Score=262.20  Aligned_cols=172  Identities=12%  Similarity=0.097  Sum_probs=129.8

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|++..|   .....++++|+|+++++||+++|+|+||||||||+|++        |.|             .++.+
T Consensus       472 I~~~nvsf~y---~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~  548 (709)
T COG2274         472 IEFENVSFRY---GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ  548 (709)
T ss_pred             EEEEEEEEEe---CCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence            4555554433   22334799999999999999999999999999999999        443             44678


Q ss_pred             hCceecCCCCCcc--h---------------hhHHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS--V---------------VDQIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~---------------~~~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      +| ||||++..++  +               +.+++...+..           ....+.-..||||||||++|||++ .+
T Consensus       549 ig-~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~  627 (709)
T COG2274         549 VG-YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK  627 (709)
T ss_pred             ee-EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence            88 9999984433  1               22222333332           234466678999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++|||||||++|+...+.+.+.+ ..+.  .|+|+|++||.....+.||++++|++|+++.+|+.++
T Consensus       628 P~ILlLDEaTSaLD~~sE~~I~~~L-~~~~--~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e  693 (709)
T COG2274         628 PKILLLDEATSALDPETEAIILQNL-LQIL--QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE  693 (709)
T ss_pred             CCEEEEeCcccccCHhHHHHHHHHH-HHHh--cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence            9999999996665555533333333 3333  3799999999999999999999999999999998765

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=7.9e-35  Score=259.20  Aligned_cols=155  Identities=17%  Similarity=0.124  Sum_probs=124.7

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCC---Ccch--------------
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSA---TISV--------------   78 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~---~~~~--------------   78 (185)
                      ..++++||++++||+++|+||||||||||+|+|        |.|.+...++ |+||+..   ..++              
T Consensus       353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~-y~~Q~~~~~~~~tv~e~l~~~~~~~~~~  431 (590)
T PRK13409        353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-YKPQYIKPDYDGTVEDLLRSITDDLGSS  431 (590)
T ss_pred             EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEE-EecccccCCCCCcHHHHHHHHhhhcChH
Confidence            358999999999999999999999999999999        4443333455 8888752   1121              


Q ss_pred             --hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297          79 --VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA  155 (185)
Q Consensus        79 --~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~  155 (185)
                        ..++++.+++.+..++++.+||||||||++||+++ .+|+++||||||+|+|......+.+.+ +.++++.+.|+|++
T Consensus       432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tviiv  510 (590)
T PRK13409        432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI-RRIAEEREATALVV  510 (590)
T ss_pred             HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEE
Confidence              24567788888888999999999999999999999 999999999997777666655555544 66655458999999


Q ss_pred             cCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         156 THF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       156 tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      ||| .++..+||++++|++ ++...+.
T Consensus       511 sHD~~~~~~~aDrvivl~~-~~~~~g~  536 (590)
T PRK13409        511 DHDIYMIDYISDRLMVFEG-EPGKHGH  536 (590)
T ss_pred             eCCHHHHHHhCCEEEEEcC-cceeeee
Confidence            999 778889999999965 7766654

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=5e-35  Score=232.18  Aligned_cols=150  Identities=22%  Similarity=0.220  Sum_probs=119.8

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhCceecCCCCC-----cc------------
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIGCFVPCDSAT-----IS------------   77 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g~~v~~~~~~-----~~------------   77 (185)
                      |++++|++++|+||||||||||+|+|        |.|.+        ..+++ |+||++..     .+            
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~   79 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIG-YVPQRHEFAWDFPISVAHTVMSGRTGH   79 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEE-EecccccccCCCCccHHHHHHhccccc
Confidence            56789999999999999999999999        43332        12345 88886521     11            


Q ss_pred             -------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHH
Q psy5297          78 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARE  143 (185)
Q Consensus        78 -------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~  143 (185)
                                   .+.++++.+++.+..++.+.+||+|||||++||+++ .+|+++|+||||+|+|+.....+.+.+ ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l-~~  158 (223)
T TIGR03771        80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF-IE  158 (223)
T ss_pred             cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH
Confidence                         123456677888788899999999999999999999 999999999997777777666666654 56


Q ss_pred             HHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         144 LASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       144 l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++ .+.|+|++||+ .++.++||+++++ +|+++..++.++
T Consensus       159 ~~~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~  198 (223)
T TIGR03771       159 LAG-AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQ  198 (223)
T ss_pred             HHH-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHH
Confidence            665 58999999999 7788999999999 799998877654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-35  Score=257.45  Aligned_cols=167  Identities=16%  Similarity=0.165  Sum_probs=126.8

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCCCC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDSAT   75 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~~~   75 (185)
                      ++++++...|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+.  ..++ |+||.+..
T Consensus         2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~   75 (530)
T PRK15064          2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLG-KLRQDQFA   75 (530)
T ss_pred             EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccCCc
Confidence            4566665443     235799999999999999999999999999999999        444443  2345 88886521


Q ss_pred             c---c-----------------------------------------------------hhhHHHhhcCccccc-ccCcCc
Q psy5297          76 I---S-----------------------------------------------------VVDQIFTRVGAADSQ-YRGIST   98 (185)
Q Consensus        76 ~---~-----------------------------------------------------~~~~~l~~~~l~~~~-~~~~~~   98 (185)
                      +   +                                                     .+.++++.+++.+.. ++++.+
T Consensus        76 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~  155 (530)
T PRK15064         76 FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSE  155 (530)
T ss_pred             CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhh
Confidence            1   1                                                     123455667776533 567899


Q ss_pred             cHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297          99 FMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus        99 lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      ||+|||||++||+++ .+|+++|||||   |+.+|.....+. .+.+.+ .+.|||++||+ ..+.++||++++|++|++
T Consensus       156 LSgGq~qrv~lA~aL~~~p~lLlLDEP---t~~LD~~~~~~l-~~~l~~-~~~tiiivsHd~~~~~~~~d~i~~l~~g~i  230 (530)
T PRK15064        156 VAPGWKLRVLLAQALFSNPDILLLDEP---TNNLDINTIRWL-EDVLNE-RNSTMIIISHDRHFLNSVCTHMADLDYGEL  230 (530)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCC---CcccCHHHHHHH-HHHHHh-CCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence            999999999999999 99999999999   555555555443 245554 58999999999 778899999999999998


Q ss_pred             E-EEeccC
Q psy5297         177 S-KYLYHT  183 (185)
Q Consensus       177 ~-~~~~~~  183 (185)
                      + +.++++
T Consensus       231 ~~~~g~~~  238 (530)
T PRK15064        231 RVYPGNYD  238 (530)
T ss_pred             EEecCCHH
Confidence            4 566543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.6e-34  Score=257.58  Aligned_cols=158  Identities=11%  Similarity=0.100  Sum_probs=121.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHH-------------HHHhhCceecCCCCCcc--h--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSV-------------FLAQIGCFVPCDSATIS--V--   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~-------------~~~~~g~~v~~~~~~~~--~--   78 (185)
                      +++|+|+||++++|+.++|+||||||||||+++|       |.|.             ++.+++ ||||++..++  +  
T Consensus       363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~-~v~Q~~~LF~~TI~e  441 (588)
T PRK11174        363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLS-WVGQNPQLPHGTLRD  441 (588)
T ss_pred             CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheE-EecCCCcCCCcCHHH
Confidence            5799999999999999999999999999999999       4332             344566 9999984433  1  


Q ss_pred             -------------hhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          79 -------------VDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        79 -------------~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                                   +.++++..++.+           ...+.-..||||||||++|||++ .+|+++||||||+++|....
T Consensus       442 NI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te  521 (588)
T PRK11174        442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE  521 (588)
T ss_pred             HhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence                         233344444332           23344567999999999999999 99999999999666555554


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         134 FGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ..+.+.+ ..+.  .++|+|++||.....+.||+++++++|++++.|+.++
T Consensus       522 ~~i~~~l-~~~~--~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~e  569 (588)
T PRK11174        522 QLVMQAL-NAAS--RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAE  569 (588)
T ss_pred             HHHHHHH-HHHh--CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHH
Confidence            4444433 4443  4799999999977777899999999999999998664

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-34  Score=237.47  Aligned_cols=170  Identities=16%  Similarity=0.157  Sum_probs=126.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------------------   60 (185)
                      .++++++...|     +.+.+++++||++++|++++|+||||||||||+++| |...                       
T Consensus        45 ~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~  119 (305)
T PRK14264         45 KLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV  119 (305)
T ss_pred             eEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            45555555433     235799999999999999999999999999999999 4321                       


Q ss_pred             ----HHHhhCceecCCCCCc--chh----------------------------------hHHHhhcCcc----cccccCc
Q psy5297          61 ----FLAQIGCFVPCDSATI--SVV----------------------------------DQIFTRVGAA----DSQYRGI   96 (185)
Q Consensus        61 ----~~~~~g~~v~~~~~~~--~~~----------------------------------~~~l~~~~l~----~~~~~~~   96 (185)
                          +...++ |+||.+..+  ++.                                  .++++.+++.    +..++++
T Consensus       120 ~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  198 (305)
T PRK14264        120 NLVELRKRVG-MVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA  198 (305)
T ss_pred             cHHHHhhceE-EEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc
Confidence                112344 888876321  211                                  1223334442    3457788


Q ss_pred             CccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccc-cceee
Q psy5297          97 STFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVI-PTFRN  173 (185)
Q Consensus        97 ~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~-~~l~~  173 (185)
                      .+||+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+++  +.|+|++||+ ..+..+||++ ++|++
T Consensus       199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L-~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~  275 (305)
T PRK14264        199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLI-EELAE--EYTVVVVTHNMQQAARISDQTAVFLTG  275 (305)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence            99999999999999999 999999999997777666555554433 56654  4799999999 7778999996 57899


Q ss_pred             eeEEEEeccC
Q psy5297         174 VHESKYLYHT  183 (185)
Q Consensus       174 g~i~~~~~~~  183 (185)
                      |+++..++++
T Consensus       276 G~i~~~g~~~  285 (305)
T PRK14264        276 GELVEYDDTD  285 (305)
T ss_pred             CEEEEeCCHH
Confidence            9999887754

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.5e-34  Score=212.68  Aligned_cols=170  Identities=15%  Similarity=0.112  Sum_probs=138.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH--------------------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS--------------------------   59 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i--------------------------   59 (185)
                      +++++...-|     |...+|.||+|+.+.|+.++++||+|+|||||+|.+...                          
T Consensus         3 irv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i   77 (242)
T COG4161           3 IQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI   77 (242)
T ss_pred             eEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence            5566655434     346799999999999999999999999999999999211                          


Q ss_pred             -HHHHhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          60 -VFLAQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        60 -~~~~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                       .++..+| +|+|.....+                         .+.++++++.+.+..++.+-.|||||+||++|||++
T Consensus        78 ~~lr~~vg-mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaral  156 (242)
T COG4161          78 RDLRRNVG-MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL  156 (242)
T ss_pred             HHHHHhhh-hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHH
Confidence             2345677 8998773332                         245678888999999999999999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                       .+|+++++|||++.+||.-...+.. +++.+.. .|.|-+++||. .-..+.+.+++.|++|+|++.|+..
T Consensus       157 mmkpqvllfdeptaaldpeitaqvv~-iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~  226 (242)
T COG4161         157 MMEPQVLLFDEPTAALDPEITAQIVS-IIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS  226 (242)
T ss_pred             hcCCcEEeecCcccccCHHHHHHHHH-HHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence             9999999999966666554444444 3578876 79999999999 6677899999999999999999864

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=100.00  E-value=1.4e-33  Score=220.71  Aligned_cols=173  Identities=49%  Similarity=0.795  Sum_probs=150.9

Q ss_pred             EEcccCCceeeec-CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297           7 VLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR   85 (185)
Q Consensus         7 ~~~~~~~~~l~~~-~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~   85 (185)
                      ++++++||+++.. ..+.++++|++++  +|++++|+||||||||||||+|+...+.++.|.|+|+....++..++++..
T Consensus         1 ~~~~~~~p~l~~~~~~~~~~~~~~~l~--~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~   78 (202)
T cd03243           1 EIKGGRHPVLLALTKGETFVPNDINLG--SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTR   78 (202)
T ss_pred             CcccccCCEEeccccCCceEeeeEEEc--CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEE
Confidence            3678999999853 3456899999886  689999999999999999999987778889999999988888888999988


Q ss_pred             cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      ++..+......++|+.+++|...++..+.+|+++|+|||++|+|+.+...+.+.+++.+.+ .+.++|++||+.++.+.+
T Consensus        79 ~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~~~  157 (202)
T cd03243          79 IGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELADLP  157 (202)
T ss_pred             ecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHHHHh
Confidence            9888888999999999999988887777999999999999999998887776666677776 589999999998888899


Q ss_pred             ccccceeeeeEEEEecc
Q psy5297         166 RVIPTFRNVHESKYLYH  182 (185)
Q Consensus       166 d~~~~l~~g~i~~~~~~  182 (185)
                      +++..++++++...++.
T Consensus       158 ~~~~~l~~~~~~~~~~~  174 (202)
T cd03243         158 EQVPGVKNLHMEELITT  174 (202)
T ss_pred             hcCCCeEEEEEEEEecC
Confidence            99999999999888764

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-35  Score=233.79  Aligned_cols=180  Identities=16%  Similarity=0.071  Sum_probs=138.5

Q ss_pred             ceEEEcccCCceeeecC--Cc--eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecC
Q psy5297           4 GTLVLNQCRHPIVELQG--GV--SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPC   71 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~--~~--~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~   71 (185)
                      +.++++++..-|....+  ..  ..+++||||++++||+++|+|.+||||||+-|+|        |.|.+.++-..-+. 
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-   81 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-   81 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence            46888888775544221  11  3699999999999999999999999999999999        44444322210111 


Q ss_pred             CCCCcchhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297          72 DSATISVVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ  149 (185)
Q Consensus        72 ~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~  149 (185)
                      .......+.++++.+|+.+ ..++.+.+|||||+||+.||||+ .+|+++++|||+|.+|..-.+.+..+ +..++++.|
T Consensus        82 ~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnL-L~dlq~~~~  160 (268)
T COG4608          82 KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNL-LKDLQEELG  160 (268)
T ss_pred             hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHH-HHHHHHHhC
Confidence            1122345778889999864 68999999999999999999999 99999999999555544443444443 477777679


Q ss_pred             CeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         150 PFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       150 ~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      .+.+++||| .-+..+|||+.+|..|+++..++.+++
T Consensus       161 lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~  197 (268)
T COG4608         161 LTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV  197 (268)
T ss_pred             CeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH
Confidence            999999999 667779999999999999999987653

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.5e-34  Score=257.28  Aligned_cols=172  Identities=13%  Similarity=0.117  Sum_probs=126.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~   64 (185)
                      ++++|+...|   .++.+++++|+||++++|+.++|+||||||||||+|+|        |.|.             ++.+
T Consensus       342 i~~~~vsf~y---~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  418 (582)
T PRK11176        342 IEFRNVTFTY---PGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ  418 (582)
T ss_pred             EEEEEEEEec---CCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence            5555554333   22336799999999999999999999999999999999        4332             2445


Q ss_pred             hCceecCCCCCcc--h----------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-C
Q psy5297          65 IGCFVPCDSATIS--V----------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~----------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      ++ |+||++..++  +                +.++++..++.+.           ......+||||||||++|||++ .
T Consensus       419 i~-~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~  497 (582)
T PRK11176        419 VA-LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_pred             ce-EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            56 9999973322  1                2233344443322           2233467999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+.+.+ ..+.  .++|+|++||+....+.||++++|++|++++.|+.++
T Consensus       498 ~~~ililDEptsaLD~~t~~~i~~~l-~~~~--~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~  564 (582)
T PRK11176        498 DSPILILDEATSALDTESERAIQAAL-DELQ--KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE  564 (582)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHH-HHHh--CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999996666555544444433 3443  3799999999977778899999999999999988654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.6e-34  Score=261.88  Aligned_cols=172  Identities=12%  Similarity=0.097  Sum_probs=129.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|+...|   .++.+++++|+||++++|+.++|+||||||||||+|+|        |.|             .++.+
T Consensus       464 I~~~~vsf~Y---~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~  540 (694)
T TIGR03375       464 IEFRNVSFAY---PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN  540 (694)
T ss_pred             EEEEEEEEEe---CCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence            5555554433   22345799999999999999999999999999999999        433             23456


Q ss_pred             hCceecCCCCCcc--h---------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS--V---------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~---------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..++  +               +.++++..++.+.           ..+....||||||||++|||++ .+
T Consensus       541 i~-~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~  619 (694)
T TIGR03375       541 IG-YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD  619 (694)
T ss_pred             cE-EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            67 9999974332  1               2333444444332           2344567999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|+.....+.+.+ ..+.  .++|+|++||+....+.||++++|++|++++.|+.++
T Consensus       620 p~iliLDE~Ts~LD~~te~~i~~~l-~~~~--~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~e  685 (694)
T TIGR03375       620 PPILLLDEPTSAMDNRSEERFKDRL-KRWL--AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ  685 (694)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHH-HHHh--CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence            9999999997776665555444433 4443  3799999999977778899999999999999998765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=1.9e-34  Score=223.30  Aligned_cols=134  Identities=19%  Similarity=0.228  Sum_probs=107.0

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------HHhhCceecCCCC--Cc-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------LAQIGCFVPCDSA--TI-   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~~~~g~~v~~~~~--~~-   76 (185)
                      +.+++++||++++|++++|+||||||||||+|+|        |.|.+               ...++ |+||++.  .+ 
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~   83 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG-LVFQDPDDQLFA   83 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEE-EEecChhhcccc
Confidence            5699999999999999999999999999999999        43321               22345 8998751  11 


Q ss_pred             -c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          77 -S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        77 -~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                       +                     .+.++++.+++.+..++++.+||+||+||++||+++ .+|+++||||||+|+|+...
T Consensus        84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence             1                     123456677888888999999999999999999999 99999999999777777665


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecChh
Q psy5297         134 FGMACSIARELASNRQPFTLFATHFH  159 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~~  159 (185)
                      ..+.+.+ ..+++ .+.|||++||+.
T Consensus       164 ~~~~~~l-~~~~~-~~~tili~sH~~  187 (190)
T TIGR01166       164 EQMLAIL-RRLRA-EGMTVVISTHDV  187 (190)
T ss_pred             HHHHHHH-HHHHH-cCCEEEEEeecc
Confidence            5555544 56665 589999999983

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=256.04  Aligned_cols=156  Identities=16%  Similarity=0.127  Sum_probs=121.3

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCCC--C---cch--------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDSA--T---ISV--------   78 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~~--~---~~~--------   78 (185)
                      .+.+++|+||++++|++++|+||||||||||+|+|        |.|.+.  ..++ |+||++.  .   +++        
T Consensus       331 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~~~t~~~~~~~~~  409 (530)
T PRK15064        331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIG-YYAQDHAYDFENDLTLFDWMSQWR  409 (530)
T ss_pred             CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEE-EEcccccccCCCCCcHHHHHHHhc
Confidence            35699999999999999999999999999999999        444332  2355 8888742  1   121        


Q ss_pred             --------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC
Q psy5297          79 --------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNR  148 (185)
Q Consensus        79 --------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~  148 (185)
                              +.++++.+++. +..++++++||+|||||++||+++ .+|+++||||||+|   +|...... +.+.+.+ .
T Consensus       410 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~---LD~~~~~~-l~~~l~~-~  484 (530)
T PRK15064        410 QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH---MDMESIES-LNMALEK-Y  484 (530)
T ss_pred             cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC---CCHHHHHH-HHHHHHH-C
Confidence                    23456677774 567899999999999999999999 99999999999555   55444443 2244444 3


Q ss_pred             CCeEEEecCh-hHHHHhhccccceeeeeEE-EEeccC
Q psy5297         149 QPFTLFATHF-HEIALLSRVIPTFRNVHES-KYLYHT  183 (185)
Q Consensus       149 ~~~vii~tH~-~~~~~~~d~~~~l~~g~i~-~~~~~~  183 (185)
                      +.|||++||| .++..+||++++|++|+++ ..++++
T Consensus       485 ~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~  521 (530)
T PRK15064        485 EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE  521 (530)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHH
Confidence            5699999999 7788899999999999987 555543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=1.1e-34  Score=228.84  Aligned_cols=155  Identities=14%  Similarity=0.050  Sum_probs=112.5

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-HHHhhCceecCCC---CCcchhh------------
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-FLAQIGCFVPCDS---ATISVVD------------   80 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-~~~~~g~~v~~~~---~~~~~~~------------   80 (185)
                      +++|+||++++|++++|+||||||||||+|+|        |.+. +..... .+.+..   ..+++.+            
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~~~~~l~~~ltv~enl~~~~~~~~~~   80 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLGANSFILPGLTGEENARMMASLYGLD   80 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccccccccCCcCcHHHHHHHHHHHcCCC
Confidence            78999999999999999999999999999999        4443 221110 111111   1122111            


Q ss_pred             ------HHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEE
Q psy5297          81 ------QIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTL  153 (185)
Q Consensus        81 ------~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vi  153 (185)
                            .+...+++++..++++++||+|||||+++|+++ .+|+++|||||++++|+.....+.+.+.+.+ +  +.++|
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~--~~~ii  157 (213)
T PRK15177         81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL-Q--QKGLI  157 (213)
T ss_pred             HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh-h--CCcEE
Confidence                  122334566667889999999999999999999 9999999999966665544444434332332 2  45799


Q ss_pred             EecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         154 FATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       154 i~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++||+ .++..+||++++|++|++++.++.+
T Consensus       158 ~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~  188 (213)
T PRK15177        158 VLTHNPRLIKEHCHAFGVLLHGKITMCEDLA  188 (213)
T ss_pred             EEECCHHHHHHhcCeeEEEECCeEEEeCCHH
Confidence            99999 7778899999999999999877543

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.3e-34  Score=224.38  Aligned_cols=158  Identities=18%  Similarity=0.138  Sum_probs=119.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------HHHhhC
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------FLAQIG   66 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------~~~~~g   66 (185)
                      .++++++...|     +++.+++|+||++++|++++|+||||||||||+++|        |.|.          +..+++
T Consensus         2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   76 (207)
T PRK13539          2 MLEGEDLACVR-----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH   76 (207)
T ss_pred             EEEEEeEEEEE-----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcE
Confidence            36666766443     235799999999999999999999999999999999        4332          223455


Q ss_pred             ceecCCCCC---cch-----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          67 CFVPCDSAT---ISV-----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        67 ~~v~~~~~~---~~~-----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                       |+++....   .++                 +.++++.+++.+..++++.+||+||+||++||+++ .+|+++|||||+
T Consensus        77 -~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  155 (207)
T PRK13539         77 -YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT  155 (207)
T ss_pred             -EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence             88765421   121                 34566777887777889999999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR  172 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~  172 (185)
                      +|+|+.....+.+.+ ..+++ .+.|+|++||+ .++..  |+++.+.
T Consensus       156 ~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~  199 (207)
T PRK13539        156 AALDAAAVALFAELI-RAHLA-QGGIVIAATHIPLGLPG--ARELDLG  199 (207)
T ss_pred             ccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCchhhcc--CcEEeec
Confidence            776666655555544 55555 58999999999 55555  7776664

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.4e-34  Score=255.94  Aligned_cols=172  Identities=16%  Similarity=0.094  Sum_probs=129.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~   64 (185)
                      ++++|++..|   .++.+++++|+||++++|++++|+||||||||||+|+|        |.|.             ++.+
T Consensus       339 i~~~~v~f~y---~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~  415 (574)
T PRK11160        339 LTLNNVSFTY---PDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA  415 (574)
T ss_pred             EEEEEEEEEC---CCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence            4455544333   22235799999999999999999999999999999999        4332             2445


Q ss_pred             hCceecCCCCCcc-----------------hhhHHHhhcCccccccc----------CcCccHHHHHHHHHHHHhC-CCC
Q psy5297          65 IGCFVPCDSATIS-----------------VVDQIFTRVGAADSQYR----------GISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        65 ~g~~v~~~~~~~~-----------------~~~~~l~~~~l~~~~~~----------~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ++ |+||++..++                 .+.++++..++.+..++          ....||||||||++|||++ .+|
T Consensus       416 i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~  494 (574)
T PRK11160        416 IS-VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA  494 (574)
T ss_pred             ee-EEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            66 9999983332                 23445666676655443          5567999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+++|+.....+.+.+ ..+.  .++|+|++||+......||++++|++|++++.|+.++
T Consensus       495 ~ililDE~ts~lD~~t~~~i~~~l-~~~~--~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~  559 (574)
T PRK11160        495 PLLLLDEPTEGLDAETERQILELL-AEHA--QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE  559 (574)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence            999999996666665544444433 4443  3789999999955556799999999999999988754

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=9.8e-34  Score=221.18  Aligned_cols=156  Identities=13%  Similarity=0.125  Sum_probs=118.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH------------HHHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS------------VFLAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i------------~~~~~~   65 (185)
                      +++++++..+     +++.+++|+||++++|++++|+||||||||||+++|        |.+            .+..++
T Consensus         2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i   76 (200)
T PRK13540          2 LDVIELDFDY-----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL   76 (200)
T ss_pred             EEEEEEEEEe-----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhhe
Confidence            4566665443     235799999999999999999999999999999999        322            223455


Q ss_pred             CceecCCCCC---cch----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          66 GCFVPCDSAT---ISV----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        66 g~~v~~~~~~---~~~----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      + |+||....   .++                +.++++.+++.+..++++.+||+||+||++||+++ .+|+++|||||+
T Consensus        77 ~-~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~  155 (200)
T PRK13540         77 C-FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL  155 (200)
T ss_pred             E-EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            6 88886522   221                34466677777777888999999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP  169 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~  169 (185)
                      +|+|+.....+.+.+ ..+++ .+.|+|++||+.....-||...
T Consensus       156 ~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sh~~~~~~~~d~~~  197 (200)
T PRK13540        156 VALDELSLLTIITKI-QEHRA-KGGAVLLTSHQDLPLNKADYEE  197 (200)
T ss_pred             cccCHHHHHHHHHHH-HHHHH-cCCEEEEEeCCchhccccchhh
Confidence            776666555555544 55555 5899999999966666677544

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=5.4e-34  Score=217.64  Aligned_cols=133  Identities=18%  Similarity=0.217  Sum_probs=102.6

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCcchhhHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATISVVDQI   82 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~~~~~~~   82 (185)
                      .+++|+||++++|++++|+||||||||||+|+|        |.+.+             ...++ |+||++..++  ..+
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~~~~~~~~--~t~   92 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA-YVPQDPFLFS--GTI   92 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE-EEcCCchhcc--chH
Confidence            699999999999999999999999999999999        32211             22344 7787763222  122


Q ss_pred             HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hH
Q psy5297          83 FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HE  160 (185)
Q Consensus        83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~  160 (185)
                      .+.+            ||+||+||+++|+++ .+|+++||||||+|+|+.....+.+.+ ..+.+  +.|+|++||+ .+
T Consensus        93 ~e~l------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~--~~tii~~sh~~~~  157 (171)
T cd03228          93 RENI------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAK--GKTVIVIAHRLST  157 (171)
T ss_pred             HHHh------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH-HHhcC--CCEEEEEecCHHH
Confidence            2111            999999999999999 999999999997777766655555544 55543  6899999999 66


Q ss_pred             HHHhhccccceeeee
Q psy5297         161 IALLSRVIPTFRNVH  175 (185)
Q Consensus       161 ~~~~~d~~~~l~~g~  175 (185)
                      +.. ||++++|++|+
T Consensus       158 ~~~-~d~~~~l~~g~  171 (171)
T cd03228         158 IRD-ADRIIVLDDGR  171 (171)
T ss_pred             HHh-CCEEEEEcCCC
Confidence            665 99999999874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.1e-34  Score=255.91  Aligned_cols=172  Identities=12%  Similarity=0.120  Sum_probs=128.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++++...|-   + .+++++|+||++++|+.++|+|+||||||||+|+|        |.|             .++.
T Consensus       340 ~i~~~~v~f~y~---~-~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~  415 (592)
T PRK10790        340 RIDIDNVSFAYR---D-DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ  415 (592)
T ss_pred             eEEEEEEEEEeC---C-CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHh
Confidence            355666554441   1 25699999999999999999999999999999999        443             2345


Q ss_pred             hhCceecCCCCCcc----------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          64 QIGCFVPCDSATIS----------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        64 ~~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      +++ |+||++..++                .+.++++..++.+.           ..+....||||||||++|||++ .+
T Consensus       416 ~i~-~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~  494 (592)
T PRK10790        416 GVA-MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT  494 (592)
T ss_pred             heE-EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence            566 9999984443                23344555555432           2234467999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|+.....+.+.+ ..+.  .++|+|++||+......||++++|++|++++.|++++
T Consensus       495 ~~illlDEpts~LD~~t~~~i~~~l-~~~~--~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~  560 (592)
T PRK10790        495 PQILILDEATANIDSGTEQAIQQAL-AAVR--EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ  560 (592)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHH-HHHh--CCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999996665554444333333 3443  3689999999977777899999999999999998764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=3.5e-34  Score=250.84  Aligned_cols=164  Identities=16%  Similarity=0.169  Sum_probs=133.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCCC
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDSA   74 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~~   74 (185)
                      .+++.++...|     +.+.+++|+||++.+|+.+||+|+||||||||||+|        |.|....  .++ |++|++.
T Consensus         3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~-~l~Q~~~   76 (530)
T COG0488           3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVG-YLSQEPP   76 (530)
T ss_pred             eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEE-EeCCCCC
Confidence            45666666555     458899999999999999999999999999999999        5555543  456 9999874


Q ss_pred             Ccc---h---------------------------------------------------hhHHHhhcCcccccccCcCccH
Q psy5297          75 TIS---V---------------------------------------------------VDQIFTRVGAADSQYRGISTFM  100 (185)
Q Consensus        75 ~~~---~---------------------------------------------------~~~~l~~~~l~~~~~~~~~~lS  100 (185)
                      ..+   +                                                   +..++..+|+.+. ++++++||
T Consensus        77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS  155 (530)
T COG0488          77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS  155 (530)
T ss_pred             cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence            332   1                                                   1233444555555 89999999


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      ||||.|++||++| .+|++||||||   |+++|..++.|+- ++|++-.| |+|+|||| .++..+|++++.+++|++..
T Consensus       156 GG~r~Rv~LA~aL~~~pDlLLLDEP---TNHLD~~~i~WLe-~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~  230 (530)
T COG0488         156 GGWRRRVALARALLEEPDLLLLDEP---TNHLDLESIEWLE-DYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTP  230 (530)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCC---CcccCHHHHHHHH-HHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeE
Confidence            9999999999999 99999999999   9999999998854 67766446 99999999 88999999999999998865


Q ss_pred             Ee
Q psy5297         179 YL  180 (185)
Q Consensus       179 ~~  180 (185)
                      +.
T Consensus       231 y~  232 (530)
T COG0488         231 YK  232 (530)
T ss_pred             ec
Confidence            43

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=5e-34  Score=242.54  Aligned_cols=170  Identities=18%  Similarity=0.196  Sum_probs=137.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------   61 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------   61 (185)
                      +.+++++..+.|-     .-.+.+||||++.+||+.+|+|.|||||||||++|        |+|.+              
T Consensus         3 ~~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~   77 (501)
T COG3845           3 PALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI   77 (501)
T ss_pred             ceEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHH
Confidence            4567777776663     35689999999999999999999999999999999        55543              


Q ss_pred             HHhhCceecCCCC---Ccch------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 LAQIGCFVPCDSA---TISV------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 ~~~~g~~v~~~~~---~~~~------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      ...+| +|+|+..   .+++                        +.++.+++|+.=..++++++||.|+|||++|.++| 
T Consensus        78 ~~GIG-MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy  156 (501)
T COG3845          78 RLGIG-MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY  156 (501)
T ss_pred             HcCCc-EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh
Confidence            23456 8999873   3333                        44556677887778999999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      .+|++|||||||+=++|...+.+... ++.+++ .|+|||++||- .|+.++|||+.+|++|+++...+
T Consensus       157 r~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         157 RGARLLILDEPTAVLTPQEADELFEI-LRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            99999999999555555444444443 578887 69999999997 99999999999999999987776

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=6e-34  Score=251.95  Aligned_cols=173  Identities=19%  Similarity=0.212  Sum_probs=126.8

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~   64 (185)
                      ++++|+...|   .++.+++++|+||++++|+.++|+||||||||||+|+|        |.+.             ++.+
T Consensus       317 i~~~~v~~~y---~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~  393 (544)
T TIGR01842       317 LSVENVTIVP---PGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH  393 (544)
T ss_pred             EEEEEEEEEc---CCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence            5555554433   22335799999999999999999999999999999999        4332             2345


Q ss_pred             hCceecCCCCCcc--hhhH---------------HHhh---------c--CcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS--VVDQ---------------IFTR---------V--GAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~~~~---------------~l~~---------~--~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..++  ..++               .++.         +  |++....+...+||||||||++|||++ .+
T Consensus       394 i~-~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~  472 (544)
T TIGR01842       394 IG-YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD  472 (544)
T ss_pred             eE-EecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence            56 9999873322  1111               1222         2  223334556778999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|+.....+.+.+ ..+.. .++|+|++||+.+..+.||++++|++|+++..|++++
T Consensus       473 ~~ililDEpts~LD~~~~~~i~~~l-~~~~~-~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~  539 (544)
T TIGR01842       473 PKLVVLDEPNSNLDEEGEQALANAI-KALKA-RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDE  539 (544)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHH-HHHhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence            9999999996666665544444433 44443 4799999999965677899999999999999988654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=3.5e-34  Score=217.89  Aligned_cols=137  Identities=14%  Similarity=0.107  Sum_probs=106.0

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCCCC--cchhhHHHhhcCccc
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDSAT--ISVVDQIFTRVGAAD   90 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~~~--~~~~~~~l~~~~l~~   90 (185)
                      +.+++|+||++++|++++|+||||||||||+++|        |.+.+.  .+++ |+||++..  .++.+++..  .   
T Consensus        14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~-~~~q~~~~~~~tv~~nl~~--~---   87 (166)
T cd03223          14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLL-FLPQRPYLPLGTLREQLIY--P---   87 (166)
T ss_pred             CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEE-EECCCCccccccHHHHhhc--c---
Confidence            5699999999999999999999999999999999        444442  2455 99998732  234444331  1   


Q ss_pred             ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297          91 SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP  169 (185)
Q Consensus        91 ~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~  169 (185)
                          .+.+||+||+||+++||++ .+|+++|||||++++|+   ....+ +.+.+.+ .+.|+|++||+.+...+||+++
T Consensus        88 ----~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~---~~~~~-l~~~l~~-~~~tiiivsh~~~~~~~~d~i~  158 (166)
T cd03223          88 ----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE---ESEDR-LYQLLKE-LGITVISVGHRPSLWKFHDRVL  158 (166)
T ss_pred             ----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH---HHHHH-HHHHHHH-hCCEEEEEeCChhHHhhCCEEE
Confidence                5789999999999999999 99999999999555544   44333 2244444 3689999999955667999999


Q ss_pred             ceeee
Q psy5297         170 TFRNV  174 (185)
Q Consensus       170 ~l~~g  174 (185)
                      +|+++
T Consensus       159 ~l~~~  163 (166)
T cd03223         159 DLDGE  163 (166)
T ss_pred             EEcCC
Confidence            99875

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=258.58  Aligned_cols=155  Identities=15%  Similarity=0.070  Sum_probs=121.4

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCC-CCc----c---------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDS-ATI----S---------   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~-~~~----~---------   77 (185)
                      ++.+++|+||++.+|++++|+||||||||||||+|        |.|.+.  ..++ |+||.. ..+    +         
T Consensus       324 ~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~~l~~~~~~~~~~~~~~  402 (638)
T PRK10636        324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLEFLRADESPLQHLARLA  402 (638)
T ss_pred             CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchhhCCccchHHHHHHHhC
Confidence            46799999999999999999999999999999999        554442  1355 888863 111    1         


Q ss_pred             ------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297          78 ------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ  149 (185)
Q Consensus        78 ------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~  149 (185)
                            .+..++..+++. +..++++++||||||||++||+++ .+|++||||||   |+++|....... .+.+.+ .+
T Consensus       403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP---t~~LD~~~~~~l-~~~L~~-~~  477 (638)
T PRK10636        403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP---TNHLDLDMRQAL-TEALID-FE  477 (638)
T ss_pred             chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---CCCCCHHHHHHH-HHHHHH-cC
Confidence                  134567778885 467899999999999999999999 99999999999   555555544442 244444 34


Q ss_pred             CeEEEecCh-hHHHHhhccccceeeeeEE-EEecc
Q psy5297         150 PFTLFATHF-HEIALLSRVIPTFRNVHES-KYLYH  182 (185)
Q Consensus       150 ~~vii~tH~-~~~~~~~d~~~~l~~g~i~-~~~~~  182 (185)
                      .|||++||| .++..+||++++|++|+++ +.|+.
T Consensus       478 gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~  512 (638)
T PRK10636        478 GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDL  512 (638)
T ss_pred             CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCH
Confidence            599999999 7888999999999999997 55544

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=8.6e-34  Score=275.32  Aligned_cols=158  Identities=14%  Similarity=0.148  Sum_probs=131.5

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCc---c-
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATI---S-   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~---~-   77 (185)
                      ++.+++|+||++.+|++++|+||||||||||+|+|        |.+.            ++..+| |+||+...+   + 
T Consensus       942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG-~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257       942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG-MCPQHNILFHHLTV 1020 (2272)
T ss_pred             CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE-EEecCCcCCCCCCH
Confidence            46799999999999999999999999999999999        3321            233456 999986322   2 


Q ss_pred             --------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297          78 --------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM  136 (185)
Q Consensus        78 --------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~  136 (185)
                                          .++++++.+++.+..++++++||||||||++||+++ .+|+++||||||+|+|+.....+
T Consensus      1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l 1100 (2272)
T TIGR01257      1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100 (2272)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence                                134567888998889999999999999999999999 99999999999777777766666


Q ss_pred             HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      .+.+ ++++  .|.|||++||+ .++..+|||+++|++|++.+.|+++
T Consensus      1101 ~~lL-~~l~--~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~ 1145 (2272)
T TIGR01257      1101 WDLL-LKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPL 1145 (2272)
T ss_pred             HHHH-HHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            5544 5554  38999999999 7888899999999999999988764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.8e-34  Score=255.22  Aligned_cols=162  Identities=17%  Similarity=0.174  Sum_probs=125.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHh--hCceecCCCCC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQ--IGCFVPCDSAT   75 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~--~g~~v~~~~~~   75 (185)
                      +.++|++..|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+...  ++ |++|....
T Consensus         2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~-~~~q~~~~   75 (638)
T PRK10636          2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLA-WVNQETPA   75 (638)
T ss_pred             EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEecCCCC
Confidence            4556665444     346799999999999999999999999999999999        55544322  23 55553210


Q ss_pred             c--------------------------------------------------chhhHHHhhcCcc-cccccCcCccHHHHH
Q psy5297          76 I--------------------------------------------------SVVDQIFTRVGAA-DSQYRGISTFMMEMK  104 (185)
Q Consensus        76 ~--------------------------------------------------~~~~~~l~~~~l~-~~~~~~~~~lS~g~~  104 (185)
                      .                                                  ..+..+++.+|+. +..++++++||||||
T Consensus        76 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGer  155 (638)
T PRK10636         76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWR  155 (638)
T ss_pred             CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHH
Confidence            0                                                  0123456667775 467889999999999


Q ss_pred             HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      ||++||+++ .+|++||||||   |+++|.....++ .+.+.+ .+.|||+|||| .++..+||++++|++|++..
T Consensus       156 qRv~LA~aL~~~P~lLLLDEP---tn~LD~~~~~~L-~~~L~~-~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~  226 (638)
T PRK10636        156 MRLNLAQALICRSDLLLLDEP---TNHLDLDAVIWL-EKWLKS-YQGTLILISHDRDFLDPIVDKIIHIEQQSLFE  226 (638)
T ss_pred             HHHHHHHHHccCCCEEEEcCC---CCcCCHHHHHHH-HHHHHh-CCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence            999999999 99999999999   666776766663 355655 57799999999 78889999999999999864

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.3e-34  Score=256.67  Aligned_cols=170  Identities=16%  Similarity=0.154  Sum_probs=127.7

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|++..|   .++.+++++|+||++++|+.++|+||||||||||+|+|        |.|             .++.+
T Consensus       452 I~~~nvsf~Y---~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  528 (686)
T TIGR03797       452 IEVDRVTFRY---RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ  528 (686)
T ss_pred             EEEEEEEEEc---CCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence            5555554433   22336799999999999999999999999999999999        444             23456


Q ss_pred             hCceecCCCCCcc----------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          65 IGCFVPCDSATIS----------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ++ |+||++..++                .+.++++..++.+..           ......||||||||++|||++ .+|
T Consensus       529 i~-~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p  607 (686)
T TIGR03797       529 LG-VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP  607 (686)
T ss_pred             cE-EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            67 9999984332                123445555554332           234467999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||++   +|...-.. +.+.+.+ .++|+|++||.....+.||++++|++|++++.|+.++
T Consensus       608 ~iLiLDEpTS~---LD~~te~~-i~~~L~~-~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~  670 (686)
T TIGR03797       608 RILLFDEATSA---LDNRTQAI-VSESLER-LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDE  670 (686)
T ss_pred             CEEEEeCCccC---CCHHHHHH-HHHHHHH-hCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHH
Confidence            99999999555   55443333 3355555 3689999999977677899999999999999998764

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.9e-34  Score=225.43  Aligned_cols=160  Identities=17%  Similarity=0.115  Sum_probs=130.5

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhh-------CceecCCCCCc----------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQI-------GCFVPCDSATI----------   76 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~-------g~~v~~~~~~~----------   76 (185)
                      ..++|+||||++.+||.+||+|+||||||||+|+|        |.+.+..++       .++-|+.....          
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G  118 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG  118 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence            45799999999999999999999999999999999        333222221       12444433111          


Q ss_pred             -------chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHh
Q psy5297          77 -------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--ARELAS  146 (185)
Q Consensus        77 -------~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~  146 (185)
                             ..++++.+..++.++.+.|++++|.||+-|++++.+. .+|++||+||.   ++..|........  ++.+.+
T Consensus       119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv---lavGD~~F~~K~~~rl~e~~~  195 (249)
T COG1134         119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV---LAVGDAAFQEKCLERLNELVE  195 (249)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh---hhcCCHHHHHHHHHHHHHHHH
Confidence                   1467778888899999999999999999999999999 99999999999   9999977666554  445544


Q ss_pred             cCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         147 NRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       147 ~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                       .+.|+|++||+ ..+.++||++++|++|++...|+++++
T Consensus       196 -~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~v  234 (249)
T COG1134         196 -KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV  234 (249)
T ss_pred             -cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHH
Confidence             57999999999 889999999999999999999988753

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.3e-33  Score=250.75  Aligned_cols=159  Identities=13%  Similarity=0.085  Sum_probs=120.9

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCcc---
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATIS---   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~~---   77 (185)
                      ++++++|+||++++|++++|+|+||||||||+|+|        |.|.             ++.+++ |+||++..++   
T Consensus       344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~-~v~Q~~~lf~~Ti  422 (571)
T TIGR02203       344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA-LVSQDVVLFNDTI  422 (571)
T ss_pred             CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce-EEccCcccccccH
Confidence            35799999999999999999999999999999999        3332             234556 9999873222   


Q ss_pred             ---------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297          78 ---------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST  130 (185)
Q Consensus        78 ---------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~  130 (185)
                                     .+.++++..++.+..           ...-..||||||||++|||++ .+|++++|||||+++|.
T Consensus       423 ~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~  502 (571)
T TIGR02203       423 ANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN  502 (571)
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence                           123345555554322           233457999999999999999 99999999999666555


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .....+.+.+ ..+.  .++|+|++||+......||+++++++|++...++.++
T Consensus       503 ~~~~~i~~~L-~~~~--~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~  553 (571)
T TIGR02203       503 ESERLVQAAL-ERLM--QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE  553 (571)
T ss_pred             HHHHHHHHHH-HHHh--CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence            5544444333 3333  3799999999988888999999999999998887654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.3e-34  Score=213.50  Aligned_cols=155  Identities=19%  Similarity=0.265  Sum_probs=128.7

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCcc--
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATIS--   77 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~~--   77 (185)
                      +...+|+++||++++||+++|+||+|||||||+|++        |.+.             ++.++. |+.|.+..++  
T Consensus        14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs-Y~~Q~paLfg~t   92 (223)
T COG4619          14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS-YCAQTPALFGDT   92 (223)
T ss_pred             CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH-HHHcCccccccc
Confidence            456899999999999999999999999999999999        3332             244555 8888764433  


Q ss_pred             -------------------hhhHHHhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297          78 -------------------VVDQIFTRVGAADS-QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM  136 (185)
Q Consensus        78 -------------------~~~~~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~  136 (185)
                                         .+..+++++++.+. +.+++.+||||++||++++|.| .-|+++||||||+.+|+-....+
T Consensus        93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i  172 (223)
T COG4619          93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI  172 (223)
T ss_pred             hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence                               35567888998764 6889999999999999999999 99999999999888777777777


Q ss_pred             HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297         137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~  177 (185)
                      ...+.+..++ ++..++++||| .+..+.+|+++.+..|++-
T Consensus       173 e~mi~~~v~~-q~vAv~WiTHd~dqa~rha~k~itl~~G~~~  213 (223)
T COG4619         173 EEMIHRYVRE-QNVAVLWITHDKDQAIRHADKVITLQPGHAG  213 (223)
T ss_pred             HHHHHHHhhh-hceEEEEEecChHHHhhhhheEEEeccCccc
Confidence            6666555554 78999999999 7889999999999998863

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=1.9e-33  Score=219.10  Aligned_cols=135  Identities=19%  Similarity=0.184  Sum_probs=106.4

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCCCC---cc-
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDSAT---IS-   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~~~---~~-   77 (185)
                      .+.+++|+||++++|++++|+||||||||||+|+|        |.+.+            ..+++ |+||....   .+ 
T Consensus        12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv   90 (198)
T TIGR01189        12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL-YLGHLPGLKPELSA   90 (198)
T ss_pred             CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheE-EeccCcccccCCcH
Confidence            36799999999999999999999999999999999        33321            23445 88876522   12 


Q ss_pred             ----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297          78 ----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI  140 (185)
Q Consensus        78 ----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i  140 (185)
                                      .+.++++.+++.+..++++.+||+||+||++||+++ .+|++++||||++|+|......+.+.+
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  170 (198)
T TIGR01189        91 LENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL  170 (198)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence                            134456778888888999999999999999999999 999999999997777666555554444


Q ss_pred             HHHHHhcCCCeEEEecChh
Q psy5297         141 ARELASNRQPFTLFATHFH  159 (185)
Q Consensus       141 l~~l~~~~~~~vii~tH~~  159 (185)
                       ..+++ .+.|+|++||+.
T Consensus       171 -~~~~~-~~~tii~~sH~~  187 (198)
T TIGR01189       171 -RAHLA-RGGIVLLTTHQD  187 (198)
T ss_pred             -HHHHh-CCCEEEEEEccc
Confidence             55555 588999999974

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=1.4e-33  Score=251.55  Aligned_cols=158  Identities=17%  Similarity=0.139  Sum_probs=120.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc--h-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS--V-   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~--~-   78 (185)
                      +++++|+||++++|++++|+|+||||||||+|+|        |.|             .++.+++ |+||++..++  . 
T Consensus       348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~Ti~  426 (588)
T PRK13657        348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA-VVFQDAGLFNRSIE  426 (588)
T ss_pred             CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE-EEecCcccccccHH
Confidence            5699999999999999999999999999999999        433             2345566 9999983332  1 


Q ss_pred             --------------hhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          79 --------------VDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        79 --------------~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                                    +.++++..++.+           ........||||||||++|||++ .+|+++||||||+++|+..
T Consensus       427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t  506 (588)
T PRK13657        427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET  506 (588)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence                          223334444332           22334557999999999999999 9999999999966666655


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ...+.+.+ ..+.  .++|+|++||+....+.||++++|++|++...|+.++
T Consensus       507 ~~~i~~~l-~~~~--~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~  555 (588)
T PRK13657        507 EAKVKAAL-DELM--KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE  555 (588)
T ss_pred             HHHHHHHH-HHHh--cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            44444433 3333  3799999999977778899999999999999887653

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=6.5e-34  Score=224.74  Aligned_cols=150  Identities=10%  Similarity=0.076  Sum_probs=112.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI-   76 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~-   76 (185)
                      ..+++|+||++++|++++|+|||||||||||++|        |.|.+                 ...++ |+||++..+ 
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~   92 (218)
T cd03290          14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA-YAAQKPWLLN   92 (218)
T ss_pred             CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEE-EEcCCCcccc
Confidence            5699999999999999999999999999999999        32211                 12244 888886322 


Q ss_pred             -chh--------------hHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297          77 -SVV--------------DQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTS  129 (185)
Q Consensus        77 -~~~--------------~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~  129 (185)
                       ++.              .++++.+++.+.           .+.++.+||+||+||++||+++ .+|+++|||||++|+|
T Consensus        93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD  172 (218)
T cd03290          93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD  172 (218)
T ss_pred             ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence             221              223333443322           2457889999999999999999 9999999999977777


Q ss_pred             cCChhHHHHH-HHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297         130 TFDGFGMACS-IARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       130 ~~d~~~~~~~-il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      +.....+.+. +++.+++ .+.|+|++||+ ..+ ..||++++|++|.
T Consensus       173 ~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~-~~~d~i~~l~~G~  218 (218)
T cd03290         173 IHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYL-PHADWIIAMKDGS  218 (218)
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHH-hhCCEEEEecCCC
Confidence            6665555552 4455554 58999999999 555 5799999998874

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=2.5e-33  Score=254.66  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=121.6

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc--h
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS--V   78 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~--~   78 (185)
                      .+++++|+||++++|+.++|+||||||||||+|+|        |.|             .++.+++ |+||++..++  +
T Consensus       491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~-~v~Q~~~lf~gTi  569 (710)
T TIGR03796       491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA-MVDQDIFLFEGTV  569 (710)
T ss_pred             CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee-EEecCChhhhccH
Confidence            35799999999999999999999999999999999        433             2356677 9999984332  1


Q ss_pred             ---------------hhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297          79 ---------------VDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF  131 (185)
Q Consensus        79 ---------------~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~  131 (185)
                                     +.++++..++.+           ...+....||||||||++|||++ .+|+++||||||++   +
T Consensus       570 ~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~---L  646 (710)
T TIGR03796       570 RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA---L  646 (710)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcccc---C
Confidence                           223344444432           23344567999999999999999 99999999999554   5


Q ss_pred             ChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       132 d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |...-.. +.+.+.+ .++|+|++||.......||++++|++|++++.|++++
T Consensus       647 D~~te~~-i~~~l~~-~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~  697 (710)
T TIGR03796       647 DPETEKI-IDDNLRR-RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEE  697 (710)
T ss_pred             CHHHHHH-HHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence            5443333 3355655 5899999999976677799999999999999998765

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1e-33  Score=250.93  Aligned_cols=168  Identities=14%  Similarity=0.102  Sum_probs=125.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCC
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDS   73 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~   73 (185)
                      ..++++|+...|-    +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+.  ..++ |+||.+
T Consensus         3 ~~i~~~nls~~~~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~v~Q~~   77 (552)
T TIGR03719         3 YIYTMNRVSKVVP----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVG-YLPQEP   77 (552)
T ss_pred             EEEEEeeEEEecC----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccC
Confidence            4577777765541    135799999999999999999999999999999999        544442  2355 999986


Q ss_pred             CC---cchhhHH---------------------------------------------------------HhhcCcccccc
Q psy5297          74 AT---ISVVDQI---------------------------------------------------------FTRVGAADSQY   93 (185)
Q Consensus        74 ~~---~~~~~~~---------------------------------------------------------l~~~~l~~~~~   93 (185)
                      ..   +++.+.+                                                         ++.+++. ..+
T Consensus        78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~  156 (552)
T TIGR03719        78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWD  156 (552)
T ss_pred             CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-ccc
Confidence            32   2332222                                                         1222332 247


Q ss_pred             cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297          94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTF  171 (185)
Q Consensus        94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l  171 (185)
                      +++++||+|||||++||+++ .+|+++|||||   |+.+|.....+.. +.+.+ .+.|||++||+ ..+..+||++++|
T Consensus       157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEP---t~~LD~~~~~~l~-~~L~~-~~~tvIiisHd~~~~~~~~d~v~~l  231 (552)
T TIGR03719       157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEP---TNHLDAESVAWLE-QHLQE-YPGTVVAVTHDRYFLDNVAGWILEL  231 (552)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC---CCCCChHHHHHHH-HHHHh-CCCeEEEEeCCHHHHHhhcCeEEEE
Confidence            78999999999999999999 99999999999   5555655555432 45554 35699999999 7888899999999


Q ss_pred             eeeeEE-EEecc
Q psy5297         172 RNVHES-KYLYH  182 (185)
Q Consensus       172 ~~g~i~-~~~~~  182 (185)
                      ++|+++ +.|+.
T Consensus       232 ~~g~i~~~~g~~  243 (552)
T TIGR03719       232 DRGRGIPWEGNY  243 (552)
T ss_pred             ECCEEEEecCCH
Confidence            999975 55554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-33  Score=219.44  Aligned_cols=170  Identities=20%  Similarity=0.176  Sum_probs=132.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH----------HHHHH------------H
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI----------GVSVF------------L   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i----------G~i~~------------~   62 (185)
                      .++++|++..   +.+ ++.+|+++|+++++||+.+|.||||||||||.++|          |.|.+            +
T Consensus         3 ~L~I~dLhv~---v~~-~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER   78 (251)
T COG0396           3 MLEIKDLHVE---VEG-KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER   78 (251)
T ss_pred             eeEEeeeEEE---ecC-chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH
Confidence            5677777432   221 25899999999999999999999999999999999          55433            4


Q ss_pred             HhhCc-eecCCCCCcc---------------------------hhhHHHhhcCccc-ccccCcC-ccHHHHHHHHHHHHh
Q psy5297          63 AQIGC-FVPCDSATIS---------------------------VVDQIFTRVGAAD-SQYRGIS-TFMMEMKETATVIKK  112 (185)
Q Consensus        63 ~~~g~-~v~~~~~~~~---------------------------~~~~~l~~~~l~~-~~~~~~~-~lS~g~~q~~~ia~~  112 (185)
                      +..|. ..+|.|..++                           .+++.++.+++++ +++|.+. .||||+|+|..|+++
T Consensus        79 Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~  158 (251)
T COG0396          79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL  158 (251)
T ss_pred             HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence            55664 3477765444                           1334556677765 6778775 599999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHH--HHHHHHhcCCCeEEEecChhHHHHhh--ccccceeeeeEEEEecc
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACS--IARELASNRQPFTLFATHFHEIALLS--RVIPTFRNVHESKYLYH  182 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~--il~~l~~~~~~~vii~tH~~~~~~~~--d~~~~l~~g~i~~~~~~  182 (185)
                      + .+|++.|||||=||+   |..++...  .++.+++ .+.+++++||+..+..+.  |++.+|.+|+|+..|++
T Consensus       159 ~~lePkl~ILDE~DSGL---DIdalk~V~~~i~~lr~-~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~  229 (251)
T COG0396         159 LLLEPKLAILDEPDSGL---DIDALKIVAEGINALRE-EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP  229 (251)
T ss_pred             HhcCCCEEEecCCCcCc---cHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence            9 999999999995554   54544332  2588877 699999999998887765  99999999999999987

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=5.3e-34  Score=256.68  Aligned_cols=160  Identities=18%  Similarity=0.227  Sum_probs=126.9

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH---------HH---------HHHhhCceecCCCCCc---ch-
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV---------SV---------FLAQIGCFVPCDSATI---SV-   78 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~---------i~---------~~~~~g~~v~~~~~~~---~~-   78 (185)
                      ++.+++|+|+++++||+++|+||||||||||||+| |.         |.         ...+++ |++|++..+   ++ 
T Consensus        80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~-yv~Q~~~l~~~lTV~  158 (659)
T PLN03211         80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLTVR  158 (659)
T ss_pred             CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceE-EECcccccCCcCCHH
Confidence            46799999999999999999999999999999999 22         11         122345 999876322   21 


Q ss_pred             -----------------------hhHHHhhcCccccc-----ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297          79 -----------------------VDQIFTRVGAADSQ-----YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTS  129 (185)
Q Consensus        79 -----------------------~~~~l~~~~l~~~~-----~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~  129 (185)
                                             ++++++.+|+.+..     ++.++.||+|||||++||+++ .+|++++|||||+|+|
T Consensus       159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD  238 (659)
T PLN03211        159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD  238 (659)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence                                   33456667776554     345678999999999999999 9999999999977777


Q ss_pred             cCChhHHHHHHHHHHHhcCCCeEEEecCh-h-HHHHhhccccceeeeeEEEEeccCC
Q psy5297         130 TFDGFGMACSIARELASNRQPFTLFATHF-H-EIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       130 ~~d~~~~~~~il~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ......+.+.+ +.+++ .|.|||++||+ . ++.+++|++++|++|++++.|+.++
T Consensus       239 ~~~~~~l~~~L-~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~  293 (659)
T PLN03211        239 ATAAYRLVLTL-GSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD  293 (659)
T ss_pred             HHHHHHHHHHH-HHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHH
Confidence            76655555544 66766 58999999998 4 5789999999999999999988654

>KOG0057|consensus

Probab=100.00  E-value=8.3e-34  Score=243.42  Aligned_cols=171  Identities=17%  Similarity=0.158  Sum_probs=131.2

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH-------------HHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF-------------LAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~-------------~~~~   65 (185)
                      +++.|+...+.    .++++|+++||+|++|+.+||+|+|||||||++|+|       |.|.+             +.-+
T Consensus       352 I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I  427 (591)
T KOG0057|consen  352 IEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI  427 (591)
T ss_pred             EEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence            44555544332    245699999999999999999999999999999999       54432             3344


Q ss_pred             CceecCCCCCcc-----------------hhhHHHhhcCcccccc-----------cCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          66 GCFVPCDSATIS-----------------VVDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        66 g~~v~~~~~~~~-----------------~~~~~l~~~~l~~~~~-----------~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      | ||||+...+.                 .+-++++++++.|...           .+-..||||||||+++||++ .+|
T Consensus       428 g-~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda  506 (591)
T KOG0057|consen  428 G-VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA  506 (591)
T ss_pred             e-EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence            5 9999984433                 2445667777765432           33456999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++++|||||.+|.....++.+.+.. .  ..++|+|++-|+.....-||+|+++++|++...|+.++
T Consensus       507 ~Il~~DEaTS~LD~~TE~~i~~~i~~-~--~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~e  571 (591)
T KOG0057|consen  507 PILLLDEATSALDSETEREILDMIMD-V--MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSE  571 (591)
T ss_pred             CeEEecCcccccchhhHHHHHHHHHH-h--cCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHH
Confidence            99999999666555554444444422 2  35899999999999999999999999999999998765

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=100.00  E-value=1.8e-32  Score=216.72  Aligned_cols=177  Identities=45%  Similarity=0.712  Sum_probs=149.4

Q ss_pred             EEcccCCceeeecC-CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297           7 VLNQCRHPIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR   85 (185)
Q Consensus         7 ~~~~~~~~~l~~~~-~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~   85 (185)
                      ++++++||+++..- ..+++++|++++.++ ++++|+||||||||||||++|.+.+.++.|.++|+....++.+++++.+
T Consensus         1 ~i~~~~hp~~~~~~~~~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~   79 (216)
T cd03284           1 EIEGGRHPVVEQVLDNEPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTR   79 (216)
T ss_pred             CcccccCCEEeeccCCCceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEecc
Confidence            36889999998643 357899999999876 9999999999999999999999899999999999888778878888877


Q ss_pred             cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      ++..+......++|..++++...+...+.+|+++|||||++||+++|+..+.+.+++.+.+..+.++|++||+.++.+++
T Consensus        80 ~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~  159 (216)
T cd03284          80 IGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELE  159 (216)
T ss_pred             CCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHh
Confidence            77766666666777666666666666568999999999999999999988777777888763388999999998899999


Q ss_pred             ccccceeeeeEEEEeccCC
Q psy5297         166 RVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       166 d~~~~l~~g~i~~~~~~~~  184 (185)
                      |++..++++++....+.++
T Consensus       160 ~~~~~v~~~~~~~~~~~~~  178 (216)
T cd03284         160 GKLPRVKNFHVAVKEKGGG  178 (216)
T ss_pred             hcCCCeEEEEEEEEeeCCe
Confidence            9999999999987776554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1e-32  Score=219.54  Aligned_cols=157  Identities=13%  Similarity=0.084  Sum_probs=114.0

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHH-HHH---HHHHHHH--------hhC-c--------------eecCCCC
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYI-RSI---GVSVFLA--------QIG-C--------------FVPCDSA   74 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLl-k~i---G~i~~~~--------~~g-~--------------~v~~~~~   74 (185)
                      ...+++++||++++||+++|+||||||||||+ ..+   |.+.+..        ..+ .              +.++++.
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT   86 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence            35699999999999999999999999999996 444   4433210        010 0              1111110


Q ss_pred             -----Ccc---------------------hhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCC--eEEEEeCC
Q psy5297          75 -----TIS---------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TEN--SLVIIDEL  124 (185)
Q Consensus        75 -----~~~---------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p--~llllDEP  124 (185)
                           ...                     ...++++.+++.+ ..++++.+||+||+||+++|+++ .+|  +++|||||
T Consensus        87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP  166 (226)
T cd03270          87 TSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP  166 (226)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence                 001                     0113445567765 47899999999999999999999 887  59999999


Q ss_pred             CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce------eeeeEEEEe
Q psy5297         125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF------RNVHESKYL  180 (185)
Q Consensus       125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l------~~g~i~~~~  180 (185)
                      ++|+|+.....+.+.+ ..+++ .|.|+|++||+.+...+||++++|      ++|+++++|
T Consensus       167 t~gLD~~~~~~l~~~l-~~~~~-~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         167 SIGLHPRDNDRLIETL-KRLRD-LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             ccCCCHHHHHHHHHHH-HHHHh-CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence            7777666655555544 56655 589999999994445799999999      999998764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=6.6e-33  Score=246.49  Aligned_cols=173  Identities=14%  Similarity=0.111  Sum_probs=126.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~   64 (185)
                      ++++|+...|-.  +.++++++|+||++++||.++|+||||||||||+|+|        |.|.             ++.+
T Consensus       338 i~~~~v~f~y~~--~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  415 (576)
T TIGR02204       338 IEFEQVNFAYPA--RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR  415 (576)
T ss_pred             EEEEEEEEECCC--CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence            555555443321  1125799999999999999999999999999999999        4332             2345


Q ss_pred             hCceecCCCCCcc-----------------hhhHHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS-----------------VVDQIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~-----------------~~~~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..++                 .+.++++..++.           ....+....||||||||+++||++ .+
T Consensus       416 i~-~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~  494 (576)
T TIGR02204       416 MA-LVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD  494 (576)
T ss_pred             ce-EEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence            66 9999883322                 122333444432           223345567999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|+.....+.+.+ ..+.  .++|+|++||+.+....||+++++++|++++.|++++
T Consensus       495 ~~ililDEpts~lD~~~~~~i~~~l-~~~~--~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~  560 (576)
T TIGR02204       495 APILLLDEATSALDAESEQLVQQAL-ETLM--KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE  560 (576)
T ss_pred             CCeEEEeCcccccCHHHHHHHHHHH-HHHh--CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence            9999999996666665544443433 4443  3799999999977778899999999999999887653

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=7.5e-33  Score=245.54  Aligned_cols=156  Identities=13%  Similarity=0.096  Sum_probs=121.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc----
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS----   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~----   77 (185)
                      +++++|+||++++|++++|+||||||||||+++|        |.|             .++.+++ |++|++..++    
T Consensus       355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~lf~~ti~  433 (555)
T TIGR01194       355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS-AIFADFHLFDDLIG  433 (555)
T ss_pred             CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc-EEccChhhhhhhhh
Confidence            3699999999999999999999999999999999        433             2345566 9999863221    


Q ss_pred             ----------hhhHHHhhcCcccccccC------cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297          78 ----------VVDQIFTRVGAADSQYRG------ISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI  140 (185)
Q Consensus        78 ----------~~~~~l~~~~l~~~~~~~------~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i  140 (185)
                                .+.++++.+++.+..+..      ..+||||||||++|||++ .+|+++||||||+++|+.....+.+.+
T Consensus       434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l  513 (555)
T TIGR01194       434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL  513 (555)
T ss_pred             cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence                      234567777776654332      367999999999999999 999999999997766665555444444


Q ss_pred             HHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEe
Q psy5297         141 ARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       141 l~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      ++.++. .+.|+|++||+.+..+.||++++|++|++++.-
T Consensus       514 ~~~~~~-~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~  552 (555)
T TIGR01194       514 LPDLKR-QGKTIIIISHDDQYFELADQIIKLAAGCIVKDT  552 (555)
T ss_pred             HHHHHh-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence            344444 589999999996677899999999999997654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=4.3e-33  Score=253.20  Aligned_cols=171  Identities=14%  Similarity=0.086  Sum_probs=125.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~   64 (185)
                      ++++|+...|-.  +.++++++|+||++++|+.++|+||||||||||+|+|        |.|.             ++.+
T Consensus       479 I~~~nVsf~Y~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       479 IEFQDVSFSYPN--RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             EEEEEEEEECCC--CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence            555555443321  1235799999999999999999999999999999999        4332             2455


Q ss_pred             hCceecCCCCCcc-----------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS-----------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~-----------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..++                 .+.++++..++.+.           ......+||||||||++|||++ .+
T Consensus       557 i~-~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~  635 (711)
T TIGR00958       557 VA-LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK  635 (711)
T ss_pred             ce-EEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence            66 9999984332                 12334444444322           2334467999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||++   +|.+.- ..+.+ .....++|+|++||..+..+.||++++|++|++++.|++++
T Consensus       636 p~ILILDEpTSa---LD~~te-~~i~~-~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~e  699 (711)
T TIGR00958       636 PRVLILDEATSA---LDAECE-QLLQE-SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ  699 (711)
T ss_pred             CCEEEEEccccc---cCHHHH-HHHHH-hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHH
Confidence            999999999555   554332 22323 32225899999999966677899999999999999998765

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=7e-33  Score=245.30  Aligned_cols=156  Identities=13%  Similarity=0.086  Sum_probs=121.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc----
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS----   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~----   77 (185)
                      +++++|+||++++|+.++|+||||||||||+++|        |.|             .++.+++ |+||++..++    
T Consensus       336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti~  414 (547)
T PRK10522        336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS-AVFTDFHLFDQLLG  414 (547)
T ss_pred             CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE-EEecChhHHHHhhc
Confidence            4699999999999999999999999999999999        433             2345566 9999873221    


Q ss_pred             ---------hhhHHHhhcCcccccccC-----cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297          78 ---------VVDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR  142 (185)
Q Consensus        78 ---------~~~~~l~~~~l~~~~~~~-----~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~  142 (185)
                               .+.++++.+++.+....+     ..+||||||||++|||++ .+|+++||||||+++|+.....+.+.+.+
T Consensus       415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~  494 (547)
T PRK10522        415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP  494 (547)
T ss_pred             cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence                     234456677776543322     358999999999999999 99999999999777666655544444433


Q ss_pred             HHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEe
Q psy5297         143 ELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       143 ~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                      .+++ .+.|+|++||+.+....||++++|++|++.+..
T Consensus       495 ~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        495 LLQE-MGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             HHHh-CCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence            3333 489999999997777899999999999998664

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=4.4e-33  Score=252.57  Aligned_cols=172  Identities=15%  Similarity=0.135  Sum_probs=126.7

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      +++++++..|   .++.+.+++|+||++++|+.++|+|+||||||||+|+|        |.|             .++.+
T Consensus       456 i~~~~vsf~y---~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~  532 (694)
T TIGR01846       456 ITFENIRFRY---APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ  532 (694)
T ss_pred             EEEEEEEEEc---CCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence            4445544332   22335699999999999999999999999999999999        433             23455


Q ss_pred             hCceecCCCCCcc--h---------------hhHHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS--V---------------VDQIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~---------------~~~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..++  +               +.++++..++.           ....+...+||||||||+++||++ .+
T Consensus       533 i~-~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~  611 (694)
T TIGR01846       533 MG-VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN  611 (694)
T ss_pred             Ce-EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence            66 9999873332  1               22233333332           233455678999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|+.....+.+.+ ..+.  .++|+|++||+.+....||++++|++|++++.|+.++
T Consensus       612 ~~ililDEpts~LD~~~~~~i~~~l-~~~~--~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~  677 (694)
T TIGR01846       612 PRILIFDEATSALDYESEALIMRNM-REIC--RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE  677 (694)
T ss_pred             CCEEEEECCCcCCCHHHHHHHHHHH-HHHh--CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            9999999996666665544444433 4443  4799999999955566799999999999999988654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=2.6e-33  Score=208.57  Aligned_cols=120  Identities=16%  Similarity=0.138  Sum_probs=94.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH-------HHHHH--hhCceecCCCCCcchhhHHHhhcCccccc
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV-------SVFLA--QIGCFVPCDSATISVVDQIFTRVGAADSQ   92 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~-------i~~~~--~~g~~v~~~~~~~~~~~~~l~~~~l~~~~   92 (185)
                      ..+++++||++++|++++|+||||||||||+++| |.       +.+..  .++ |+||                     
T Consensus        13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~-~~~~---------------------   70 (144)
T cd03221          13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIG-YFEQ---------------------   70 (144)
T ss_pred             ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEE-EEcc---------------------
Confidence            4699999999999999999999999999999999 32       22211  112 3333                     


Q ss_pred             ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccc
Q psy5297          93 YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPT  170 (185)
Q Consensus        93 ~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~  170 (185)
                            ||+||+||++|||++ .+|+++|||||++|+|......+.    +.+++ .+.|++++||+ .++.++||++++
T Consensus        71 ------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~----~~l~~-~~~til~~th~~~~~~~~~d~v~~  139 (144)
T cd03221          71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE----EALKE-YPGTVILVSHDRYFLDQVATKIIE  139 (144)
T ss_pred             ------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH----HHHHH-cCCEEEEEECCHHHHHHhCCEEEE
Confidence                  999999999999999 999999999996665544433332    34443 35799999999 778889999999


Q ss_pred             eeeee
Q psy5297         171 FRNVH  175 (185)
Q Consensus       171 l~~g~  175 (185)
                      |++|+
T Consensus       140 l~~g~  144 (144)
T cd03221         140 LEDGK  144 (144)
T ss_pred             EeCCC
Confidence            99885

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=100.00  E-value=5.5e-32  Score=213.95  Aligned_cols=173  Identities=41%  Similarity=0.655  Sum_probs=150.6

Q ss_pred             EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcC
Q psy5297           8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG   87 (185)
Q Consensus         8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~   87 (185)
                      +++++||+++...+.+++.+|++|+.++|++++|+||||+||||+++++|.+.+++|+|+|||++...++.++.++.+++
T Consensus         2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~   81 (218)
T cd03286           2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIG   81 (218)
T ss_pred             cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecC
Confidence            68899999975544579999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             cccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcc
Q psy5297          88 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRV  167 (185)
Q Consensus        88 l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~  167 (185)
                      ..+......|+|+.++++...+.+...+|+++|+|||++||++.|+.++.+.+++++.+..+.++|++||+.++......
T Consensus        82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~  161 (218)
T cd03286          82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHE  161 (218)
T ss_pred             cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence            88889999999999999999999988999999999999999999999999987788886338999999999665543333


Q ss_pred             ccceeeeeEEEEe
Q psy5297         168 IPTFRNVHESKYL  180 (185)
Q Consensus       168 ~~~l~~g~i~~~~  180 (185)
                      -.-+.+.++....
T Consensus       162 ~~~v~~~~m~~~~  174 (218)
T cd03286         162 HGGVRLGHMACAV  174 (218)
T ss_pred             CcceEEEEEEEEE
Confidence            3345556654433

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.4e-33  Score=247.79  Aligned_cols=154  Identities=16%  Similarity=0.138  Sum_probs=117.6

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCC-CC---cch---------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDS-AT---ISV---------   78 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~-~~---~~~---------   78 (185)
                      ++.+++|+||++++|++++|+||||||||||+|+|        |.|.+..  .++ |+||+. ..   +++         
T Consensus       336 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~v~q~~~~~~~~~tv~e~l~~~~~  414 (556)
T PRK11819        336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLA-YVDQSRDALDPNKTVWEEISGGLD  414 (556)
T ss_pred             CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEE-EEeCchhhcCCCCCHHHHHHhhcc
Confidence            35799999999999999999999999999999999        4444422  245 999874 11   121         


Q ss_pred             ----------hhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297          79 ----------VDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS  146 (185)
Q Consensus        79 ----------~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~  146 (185)
                                ...+++.+++.+ ..++++++||+|||||++||+++ .+|+++||||||+|+   |.....+. .+.+.+
T Consensus       415 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L---D~~~~~~l-~~~l~~  490 (556)
T PRK11819        415 IIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL---DVETLRAL-EEALLE  490 (556)
T ss_pred             cccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC---CHHHHHHH-HHHHHh
Confidence                      224566778763 56899999999999999999999 999999999995555   54444332 244443


Q ss_pred             cCCCeEEEecCh-hHHHHhhccccceee-eeEE-EEec
Q psy5297         147 NRQPFTLFATHF-HEIALLSRVIPTFRN-VHES-KYLY  181 (185)
Q Consensus       147 ~~~~~vii~tH~-~~~~~~~d~~~~l~~-g~i~-~~~~  181 (185)
                       ...+||++||+ .++..+||++++|++ |++. ..|+
T Consensus       491 -~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~  527 (556)
T PRK11819        491 -FPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGN  527 (556)
T ss_pred             -CCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCC
Confidence             23489999999 788899999999986 7775 3443

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.5e-33  Score=240.01  Aligned_cols=158  Identities=18%  Similarity=0.122  Sum_probs=125.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc----
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS----   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~----   77 (185)
                      +++++|+||++++|+.++|+|+||||||||+++|        |.|             .|+.++. ||||++..++    
T Consensus       334 ~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~-~v~Q~p~lf~gTir  412 (559)
T COG4988         334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIR  412 (559)
T ss_pred             CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee-eeCCCCccccccHH
Confidence            3899999999999999999999999999999999        444             2356677 9999884433    


Q ss_pred             -------------hhhHHHhhcCcccc----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          78 -------------VVDQIFTRVGAADS----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        78 -------------~~~~~l~~~~l~~~----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                                   .+.++++..++.+.          ..+.-..||+||+||+++||++ .+++++|+||||+++|....
T Consensus       413 eNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE  492 (559)
T COG4988         413 ENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE  492 (559)
T ss_pred             HHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHH
Confidence                         13344455554433          3344456999999999999999 99999999999666666554


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         134 FGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ..+.+. +.++.+  ++|++++||......-+|+|++|++|++++.|.+++
T Consensus       493 ~~i~~~-l~~l~~--~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~  540 (559)
T COG4988         493 QIILQA-LQELAK--QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEE  540 (559)
T ss_pred             HHHHHH-HHHHHh--CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHH
Confidence            444443 366665  699999999988888899999999999999998765

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=6e-33  Score=247.50  Aligned_cols=158  Identities=13%  Similarity=0.072  Sum_probs=118.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCcc--hh
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATIS--VV   79 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~~--~~   79 (185)
                      +++++|+||++++|++++|+||||||||||+++|        |.|.             ++.+++ |+||++..++  ..
T Consensus       348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti~  426 (585)
T TIGR01192       348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA-TVFQDAGLFNRSIR  426 (585)
T ss_pred             CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE-EEccCCccCcccHH
Confidence            4689999999999999999999999999999999        4332             234556 9999873322  11


Q ss_pred             ---------------hHHHhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          80 ---------------DQIFTRVG-----------AADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        80 ---------------~~~l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                                     .+.++..+           ++....+....||||||||++|||++ .+|+++||||||+++|...
T Consensus       427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~  506 (585)
T TIGR01192       427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET  506 (585)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence                           11222222           22234456678999999999999999 9999999999966666655


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ...+.+.+ ..+.  .+.|+|++||+.+....||++++|++|+++..|+.++
T Consensus       507 ~~~i~~~l-~~~~--~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~  555 (585)
T TIGR01192       507 EARVKNAI-DALR--KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE  555 (585)
T ss_pred             HHHHHHHH-HHHh--CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence            44444433 4443  3899999999955556799999999999999887654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=4.4e-33  Score=252.35  Aligned_cols=154  Identities=16%  Similarity=0.104  Sum_probs=121.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCC-CCcc--------------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDS-ATIS--------------   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~-~~~~--------------   77 (185)
                      +.+++|+||++++|++++|+||||||||||||+|        |.|.+.  ..++ |+||.. ..++              
T Consensus       522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~~~l~~~~~~~~~~~~~~~  600 (718)
T PLN03073        522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHVDGLDLSSNPLLYMMRCFP  600 (718)
T ss_pred             CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEeccccccCCcchhHHHHHHHhcC
Confidence            4699999999999999999999999999999999        444332  2345 888864 1111              


Q ss_pred             -----hhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC
Q psy5297          78 -----VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP  150 (185)
Q Consensus        78 -----~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~  150 (185)
                           .+..+++.+++.+ ..++++++||+|||||++||+++ .+|++||||||   |+++|...... +++.+.+ .+.
T Consensus       601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP---T~~LD~~s~~~-l~~~L~~-~~g  675 (718)
T PLN03073        601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP---SNHLDLDAVEA-LIQGLVL-FQG  675 (718)
T ss_pred             CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC---CCCCCHHHHHH-HHHHHHH-cCC
Confidence                 1345677788863 57889999999999999999999 99999999999   55556555544 3355554 245


Q ss_pred             eEEEecCh-hHHHHhhccccceeeeeEE-EEecc
Q psy5297         151 FTLFATHF-HEIALLSRVIPTFRNVHES-KYLYH  182 (185)
Q Consensus       151 ~vii~tH~-~~~~~~~d~~~~l~~g~i~-~~~~~  182 (185)
                      |||++||+ ..+..+||++++|++|+++ +.++.
T Consensus       676 tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~  709 (718)
T PLN03073        676 GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTF  709 (718)
T ss_pred             EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCH
Confidence            99999999 7888899999999999997 55543

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=1e-33  Score=236.24  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=113.2

Q ss_pred             EEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---ch--------------------
Q psy5297          41 VTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---SV--------------------   78 (185)
Q Consensus        41 l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~~--------------------   78 (185)
                      |+||||||||||+|+|        |.|.+           ..+++ |+||++..+   ++                    
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHIN-MVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            5899999999999999        44322           22355 899886322   21                    


Q ss_pred             -hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297          79 -VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT  156 (185)
Q Consensus        79 -~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t  156 (185)
                       ++++++.+++.+..++++.+||+|||||++|||++ .+|+++|||||++|+|+.....+.+.+ ..+.++.+.|+|++|
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l-~~l~~~~g~tiiivT  158 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL-KTIQEQLGITFVFVT  158 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHhcCCEEEEEe
Confidence             23456778888888999999999999999999999 999999999997777666655555544 555553589999999


Q ss_pred             Ch-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         157 HF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       157 H~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+ .++..+||++++|++|++...+++++
T Consensus       159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~  187 (325)
T TIGR01187       159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEE  187 (325)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99 78889999999999999998887654

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=6.1e-33  Score=249.43  Aligned_cols=152  Identities=16%  Similarity=0.129  Sum_probs=117.8

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCCC----Ccch---------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDSA----TISV---------   78 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~~----~~~~---------   78 (185)
                      .+.+++|+||++++|++++|+||||||||||||+|        |.|.+..  .++ |++|...    ..++         
T Consensus       331 ~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~l~~~~tv~e~l~~~~~  409 (635)
T PRK11147        331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAELDPEKTVMDNLAEGKQ  409 (635)
T ss_pred             CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-EEeCcccccCCCCCHHHHHHhhcc
Confidence            45799999999999999999999999999999999        5554421  245 8888641    1122         


Q ss_pred             ----------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297          79 ----------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS  146 (185)
Q Consensus        79 ----------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~  146 (185)
                                +.+++..+++. +..++++++||+|||||++||+++ .+|++||||||   |+++|...... +.+.+.+
T Consensus       410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEP---t~~LD~~~~~~-l~~~l~~  485 (635)
T PRK11147        410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP---TNDLDVETLEL-LEELLDS  485 (635)
T ss_pred             cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---CCCCCHHHHHH-HHHHHHh
Confidence                      22345556664 457889999999999999999999 99999999999   55556555443 3345554


Q ss_pred             cCCCeEEEecCh-hHHHHhhcccccee-eeeEEEE
Q psy5297         147 NRQPFTLFATHF-HEIALLSRVIPTFR-NVHESKY  179 (185)
Q Consensus       147 ~~~~~vii~tH~-~~~~~~~d~~~~l~-~g~i~~~  179 (185)
                       .+.|||++||| .++..+||++++++ +|++..+
T Consensus       486 -~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~  519 (635)
T PRK11147        486 -YQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY  519 (635)
T ss_pred             -CCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence             45699999999 78889999999998 7998643

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=7e-33  Score=245.58  Aligned_cols=150  Identities=18%  Similarity=0.199  Sum_probs=116.3

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCCC-C---cch---------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDSA-T---ISV---------   78 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~~-~---~~~---------   78 (185)
                      ++.+++|+||++++|++++|+||||||||||+|+|        |.|.+..  .++ |+||++. .   +++         
T Consensus       334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~-~v~q~~~~~~~~~tv~e~l~~~~~  412 (552)
T TIGR03719       334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLA-YVDQSRDALDPNKTVWEEISGGLD  412 (552)
T ss_pred             CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEE-EEeCCccccCCCCcHHHHHHhhcc
Confidence            35799999999999999999999999999999999        5554422  245 8998741 1   121         


Q ss_pred             ----------hhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297          79 ----------VDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS  146 (185)
Q Consensus        79 ----------~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~  146 (185)
                                ..++++.+++.+ ..++++++||+|||||++||+++ .+|+++||||||+|   +|.....+. .+.+.+
T Consensus       413 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~---LD~~~~~~l-~~~l~~  488 (552)
T TIGR03719       413 IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND---LDVETLRAL-EEALLE  488 (552)
T ss_pred             ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC---CCHHHHHHH-HHHHHH
Confidence                      234567778864 46889999999999999999999 99999999999555   554444442 244444


Q ss_pred             cCCCeEEEecCh-hHHHHhhccccceee-eeEE
Q psy5297         147 NRQPFTLFATHF-HEIALLSRVIPTFRN-VHES  177 (185)
Q Consensus       147 ~~~~~vii~tH~-~~~~~~~d~~~~l~~-g~i~  177 (185)
                       .+.+||++||+ .++..+||++++|++ |++.
T Consensus       489 -~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~  520 (552)
T TIGR03719       489 -FAGCAVVISHDRWFLDRIATHILAFEGDSHVE  520 (552)
T ss_pred             -CCCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence             23489999999 778889999999987 5765

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=2e-33  Score=215.79  Aligned_cols=130  Identities=17%  Similarity=0.147  Sum_probs=99.5

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH--------HHHHHHh-hCceecCCCCCcchhhHHHhhcCcccc
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG--------VSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAADS   91 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG--------~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~~~   91 (185)
                      +++.+++++ |++++|++++|+||||||||||+|+|.        .|.+... ++ |+||...                 
T Consensus        11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~q~~~-----------------   71 (177)
T cd03222          11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV-YKPQYID-----------------   71 (177)
T ss_pred             CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE-EEcccCC-----------------
Confidence            346688884 899999999999999999999999992        2222211 22 4444221                 


Q ss_pred             cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccc
Q psy5297          92 QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIP  169 (185)
Q Consensus        92 ~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~  169 (185)
                             ||+|||||+++|+++ .+|++++||||++++|+.....+...+ ..++++.+.|+|++||+ .++..+||+++
T Consensus        72 -------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l-~~~~~~~~~tiiivsH~~~~~~~~~d~i~  143 (177)
T cd03222          72 -------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI-RRLSEEGKKTALVVEHDLAVLDYLSDRIH  143 (177)
T ss_pred             -------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence                   999999999999999 999999999996666665555555544 55554234899999999 77788999999


Q ss_pred             ceeeeeEE
Q psy5297         170 TFRNVHES  177 (185)
Q Consensus       170 ~l~~g~i~  177 (185)
                      +|+++-.+
T Consensus       144 ~l~~~~~~  151 (177)
T cd03222         144 VFEGEPGV  151 (177)
T ss_pred             EEcCCCcc
Confidence            99987554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=100.00  E-value=7.1e-32  Score=213.89  Aligned_cols=162  Identities=43%  Similarity=0.764  Sum_probs=147.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR   85 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~   85 (185)
                      +.+++++||+++.....+++++|++|++++|++++|+||||+||||++|+++.+.+.++.|.|+|+....++.+++++.+
T Consensus         1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~   80 (222)
T cd03287           1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR   80 (222)
T ss_pred             CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE
Confidence            46899999999865555799999999999999999999999999999999999999999999999999889999999999


Q ss_pred             cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      ++..+......|+|+.++++...+.+.+.+|+++|+|||++||++.|+.++.+.+++.+.+..+.++|++||+.++.++.
T Consensus        81 ~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~  160 (222)
T cd03287          81 MGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL  160 (222)
T ss_pred             ecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence            99999999999999999999999999888899999999999999999998877777888873488999999997777766


Q ss_pred             cc
Q psy5297         166 RV  167 (185)
Q Consensus       166 d~  167 (185)
                      .+
T Consensus       161 ~~  162 (222)
T cd03287         161 RR  162 (222)
T ss_pred             Hh
Confidence            43

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=1e-32  Score=248.48  Aligned_cols=176  Identities=14%  Similarity=0.148  Sum_probs=136.6

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------   61 (185)
                      .++++|+...|-.. .+.+.+++|+||++++||+++|+||||||||||+|+|        |.+.+               
T Consensus         4 ~l~~~nl~~~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          4 LLELKDIRRSYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             EEEEeeEEEEeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence            57777776544210 1125699999999999999999999999999999999        32211               


Q ss_pred             --HHhhCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          62 --LAQIGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        62 --~~~~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                        +..++ |+||++..+   +                     .+.++++.+++.+..++++.+||+||+||++|||++ .
T Consensus        83 ~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~  161 (648)
T PRK10535         83 LRREHFG-FIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN  161 (648)
T ss_pred             HHhccEE-EEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence              12345 999887322   2                     123456677888888999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++|||||++|+|......+.+. ++.+++ .+.|++++||+.+..+.||++++|++|++++.+++++
T Consensus       162 ~P~lLllDEP~~gLD~~s~~~l~~l-l~~l~~-~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~  229 (648)
T PRK10535        162 GGQVILADEPTGALDSHSGEEVMAI-LHQLRD-RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQE  229 (648)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH-HHHHHh-cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccc
Confidence            9999999999777666655555554 366665 5899999999955667899999999999999988764

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-32  Score=207.30  Aligned_cols=177  Identities=19%  Similarity=0.156  Sum_probs=136.4

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |++|.+++.++++-|     +...-..|+||++-+||+.+|+|.+||||||||+||        |.+.+           
T Consensus         2 ~~~PLL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~   76 (258)
T COG4107           2 MDKPLLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLY   76 (258)
T ss_pred             CCCcceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHh
Confidence            467778888887766     335568999999999999999999999999999999        33321           


Q ss_pred             -----------HHhhCceecCCCCC---cc------------------------hhhHHHhhcCcc-cccccCcCccHHH
Q psy5297          62 -----------LAQIGCFVPCDSAT---IS------------------------VVDQIFTRVGAA-DSQYRGISTFMME  102 (185)
Q Consensus        62 -----------~~~~g~~v~~~~~~---~~------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g  102 (185)
                                 +...| +|.|++..   +.                        .+..+++++.++ +..+..+.+||||
T Consensus        77 ~msEaeRR~L~RTeWG-~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG  155 (258)
T COG4107          77 TMSEAERRRLLRTEWG-FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG  155 (258)
T ss_pred             hhchHHHHHHhhhccc-eeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence                       23446 88887621   11                        244677777775 4568889999999


Q ss_pred             HHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH-HhhccccceeeeeEEEEe
Q psy5297         103 MKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA-LLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       103 ~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~-~~~d~~~~l~~g~i~~~~  180 (185)
                      |+||+.|||.+ +.|+++++||||-|+|..-.+.+..+ ++.+..+.+.+++++|||.-++ -+++|..+|++|++++.|
T Consensus       156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDl-lrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G  234 (258)
T COG4107         156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL-LRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG  234 (258)
T ss_pred             HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHH-HHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence            99999999999 99999999999555554443333332 4666666799999999995555 579999999999999988


Q ss_pred             ccCC
Q psy5297         181 YHTN  184 (185)
Q Consensus       181 ~~~~  184 (185)
                      -++.
T Consensus       235 LTDr  238 (258)
T COG4107         235 LTDR  238 (258)
T ss_pred             cccc
Confidence            7654

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=5.7e-33  Score=246.93  Aligned_cols=159  Identities=13%  Similarity=0.116  Sum_probs=120.3

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc--h
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS--V   78 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~--~   78 (185)
                      .+++++|+||++++|++++|+||||||||||+++|        |.|             .++.+++ |+||++..++  +
T Consensus       327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti  405 (569)
T PRK10789        327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA-VVSQTPFLFSDTV  405 (569)
T ss_pred             CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE-EEccCCeeccccH
Confidence            35799999999999999999999999999999999        333             2234556 9999873332  1


Q ss_pred             ---------------hhHHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297          79 ---------------VDQIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF  131 (185)
Q Consensus        79 ---------------~~~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~  131 (185)
                                     +..+++..++.           ....+....||+|||||++|||++ .+|+++||||||+++|+.
T Consensus       406 ~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~  485 (569)
T PRK10789        406 ANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR  485 (569)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence                           22233333332           223445578999999999999999 999999999996666665


Q ss_pred             ChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       132 d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ....+.+.+ ..+.  .+.|+|++||+.+....||++++|++|+++..|+.++
T Consensus       486 ~~~~i~~~l-~~~~--~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~  535 (569)
T PRK10789        486 TEHQILHNL-RQWG--EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQ  535 (569)
T ss_pred             HHHHHHHHH-HHHh--CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHH
Confidence            544444433 4443  4899999999966667799999999999999987653

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=9.8e-33  Score=245.23  Aligned_cols=171  Identities=16%  Similarity=0.156  Sum_probs=128.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~   64 (185)
                      ++++++...|-    +++++++|+||++++|+.++|+||+||||||++++|        |.|.             ++.+
T Consensus       329 I~f~~vsf~y~----~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~  404 (567)
T COG1132         329 IEFENVSFSYP----GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR  404 (567)
T ss_pred             EEEEEEEEEcC----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence            45555544332    146899999999999999999999999999999999        4443             3567


Q ss_pred             hCceecCCCCCcc--h---------------hhHHHhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS--V---------------VDQIFTRVG-----------AADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~---------------~~~~l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ +|||++..+.  +               +.++++..+           .+.........||||||||++|||++ .+
T Consensus       405 I~-~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~  483 (567)
T COG1132         405 IG-IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN  483 (567)
T ss_pred             cc-EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            77 9999984433  1               222233222           23333445568999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |++++|||||+++|+.....+.+.+ ..+.+  ++|+++++|.....+.||++++|++|++++.|++++
T Consensus       484 ~~ILILDEaTSalD~~tE~~I~~~l-~~l~~--~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e  549 (567)
T COG1132         484 PPILILDEATSALDTETEALIQDAL-KKLLK--GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE  549 (567)
T ss_pred             CCEEEEeccccccCHHhHHHHHHHH-HHHhc--CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence            9999999997777776655555554 44443  579999999855445599999999999999998865

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=8.8e-33  Score=230.41  Aligned_cols=178  Identities=18%  Similarity=0.124  Sum_probs=138.2

Q ss_pred             ceEEEcccCCceeeecC------CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH---------
Q psy5297           4 GTLVLNQCRHPIVELQG------GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF---------   61 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~------~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~---------   61 (185)
                      +.++.++++..|.-..+      ....+++++||++.+|+.++|+|.+|||||||=+.|       |.|.+         
T Consensus       275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~  354 (534)
T COG4172         275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS  354 (534)
T ss_pred             ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccC
Confidence            45666666543322211      234589999999999999999999999999998887       55543         


Q ss_pred             -------HHhhCceecCCCC-Cc----c-----------------------hhhHHHhhcCccc-ccccCcCccHHHHHH
Q psy5297          62 -------LAQIGCFVPCDSA-TI----S-----------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKE  105 (185)
Q Consensus        62 -------~~~~g~~v~~~~~-~~----~-----------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q  105 (185)
                             +.++- .|||++. .+    +                       ++.+.+..+|++. ..++++.+|||||||
T Consensus       355 ~~~mrplR~~mQ-vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ  433 (534)
T COG4172         355 RKEMRPLRRRMQ-VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ  433 (534)
T ss_pred             hhhhhhhhhhce-EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence                   23344 7888872 22    2                       2456678889874 579999999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      |++|||++ .+|++++||||   |+.+|..-..+.+  ++.+.++.|.+-+++||| .-+..+||++++|++|+|+++|+
T Consensus       434 RIAIARAliLkP~~i~LDEP---TSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~  510 (534)
T COG4172         434 RIAIARALILKPELILLDEP---TSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP  510 (534)
T ss_pred             HHHHHHHHhcCCcEEEecCC---chHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence            99999999 99999999999   6666644444432  577777689999999999 66778999999999999999998


Q ss_pred             cCCC
Q psy5297         182 HTNV  185 (185)
Q Consensus       182 ~~~~  185 (185)
                      .+++
T Consensus       511 ~~~i  514 (534)
T COG4172         511 TEAV  514 (534)
T ss_pred             HHHH
Confidence            7653

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.98  E-value=1.6e-32  Score=249.33  Aligned_cols=170  Identities=18%  Similarity=0.142  Sum_probs=125.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      +++++++..|   . +.+++++|+||++++|+.++|+||||||||||+|+|        |.|             .++.+
T Consensus       474 I~~~~vsf~y---~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  549 (708)
T TIGR01193       474 IVINDVSYSY---G-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF  549 (708)
T ss_pred             EEEEEEEEEc---C-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence            4555554433   1 235799999999999999999999999999999999        433             23456


Q ss_pred             hCceecCCCCCcc------------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          65 IGCFVPCDSATIS------------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        65 ~g~~v~~~~~~~~------------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      ++ |+||++..++                  .+.++++..++.+           ........||||||||++|||++ .
T Consensus       550 i~-~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~  628 (708)
T TIGR01193       550 IN-YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT  628 (708)
T ss_pred             eE-EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence            67 9999973322                  1223344444432           23345567999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+.    +.+.+..++|+|++||+....+.||++++|++|++++.|+.++
T Consensus       629 ~p~iliLDE~Ts~LD~~te~~i~----~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~  694 (708)
T TIGR01193       629 DSKVLILDESTSNLDTITEKKIV----NNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE  694 (708)
T ss_pred             CCCEEEEeCccccCCHHHHHHHH----HHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence            99999999996665554433333    3333224789999999977778899999999999999988654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.98  E-value=1.6e-32  Score=246.73  Aligned_cols=162  Identities=13%  Similarity=0.132  Sum_probs=121.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhh-CceecCCCCC
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQI-GCFVPCDSAT   75 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~-g~~v~~~~~~   75 (185)
                      .++++++...|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+.... ..|++|.+..
T Consensus         3 ~l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~   77 (635)
T PRK11147          3 LISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR   77 (635)
T ss_pred             EEEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC
Confidence            46677766544     236799999999999999999999999999999999        444432211 0144432200


Q ss_pred             ---c-------------------------------------------------------chhhHHHhhcCcccccccCcC
Q psy5297          76 ---I-------------------------------------------------------SVVDQIFTRVGAADSQYRGIS   97 (185)
Q Consensus        76 ---~-------------------------------------------------------~~~~~~l~~~~l~~~~~~~~~   97 (185)
                         .                                                       ..+..+++.+++.  .+++++
T Consensus        78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~  155 (635)
T PRK11147         78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALS  155 (635)
T ss_pred             CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchh
Confidence               0                                                       0123344555654  378899


Q ss_pred             ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297          98 TFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus        98 ~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      +||||||||++||+++ .+|++||||||   |+++|.....++. +.+.+ .+.+||+|||| .++..+||++++|++|+
T Consensus       156 ~LSgGekqRv~LAraL~~~P~lLLLDEP---t~~LD~~~~~~L~-~~L~~-~~~tvlivsHd~~~l~~~~d~i~~L~~G~  230 (635)
T PRK11147        156 SLSGGWLRKAALGRALVSNPDVLLLDEP---TNHLDIETIEWLE-GFLKT-FQGSIIFISHDRSFIRNMATRIVDLDRGK  230 (635)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEEEEcCC---CCccCHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence            9999999999999999 99999999999   6667766666543 55655 45699999999 78889999999999999


Q ss_pred             EEE
Q psy5297         176 ESK  178 (185)
Q Consensus       176 i~~  178 (185)
                      ++.
T Consensus       231 i~~  233 (635)
T PRK11147        231 LVS  233 (635)
T ss_pred             EEE
Confidence            974

>KOG0058|consensus

Probab=99.98  E-value=1.1e-32  Score=242.89  Aligned_cols=175  Identities=14%  Similarity=0.123  Sum_probs=135.1

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFL   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~   62 (185)
                      +.++++|+...|....  ...|++|+||++++||+++|+||||+||||+..+|        |.|             +++
T Consensus       464 G~IeF~~VsFaYP~Rp--~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr  541 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRP--DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR  541 (716)
T ss_pred             ceEEEEEeeeecCCCC--CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence            3567777777776543  36799999999999999999999999999999999        544             446


Q ss_pred             HhhCceecCCCCCcc--hhhHHH---------------hhcC-------cccc----cccCcCccHHHHHHHHHHHHhC-
Q psy5297          63 AQIGCFVPCDSATIS--VVDQIF---------------TRVG-------AADS----QYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        63 ~~~g~~v~~~~~~~~--~~~~~l---------------~~~~-------l~~~----~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      .++| +|-|+|..++  +.+++.               +..+       +.+-    ..++-.+||||||||++||||| 
T Consensus       542 ~~Ig-~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  542 RKIG-LVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             HHee-eeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence            7778 9999994443  322222               1111       1111    2345568999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|++|||||.||.+|........+.+ ..+.+  +.|||++.|.....+-||+|+++++|++++.|+.++
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL-~~~~~--~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~e  688 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEAL-DRLMQ--GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDE  688 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHH-HHhhc--CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHH
Confidence            999999999997777776655444443 66554  699999999988888899999999999999997655

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.98  E-value=1.6e-32  Score=246.02  Aligned_cols=161  Identities=16%  Similarity=0.144  Sum_probs=131.3

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH----------H----------HHHHhhCceecCCCCCc---
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV----------S----------VFLAQIGCFVPCDSATI---   76 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~----------i----------~~~~~~g~~v~~~~~~~---   76 (185)
                      +++.+|+|+|+++++||+++|+|||||||||||++| |.          |          .+...++ |+||++..+   
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-yv~Q~~~~~~~l  114 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA-YVQQDDLFIPTL  114 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhce-eeccccccCccC
Confidence            356799999999999999999999999999999999 21          2          1223445 999987322   


Q ss_pred             c------------------------hhhHHHhhcCcccccccCcC------ccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          77 S------------------------VVDQIFTRVGAADSQYRGIS------TFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        77 ~------------------------~~~~~l~~~~l~~~~~~~~~------~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      +                        .++++++.+++.+..+..++      .+|+|||||++||+++ .+|++++||||+
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt  194 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT  194 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence            2                        24566777888877777776      5999999999999999 999999999997


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+|+.....+.+.+ +.+++ .|.|+|+++|+  .++.+++|++++|++|++++.|++++
T Consensus       195 sgLD~~~~~~l~~~L-~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~  253 (617)
T TIGR00955       195 SGLDSFMAYSVVQVL-KGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ  253 (617)
T ss_pred             cchhHHHHHHHHHHH-HHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH
Confidence            777776666555544 66766 59999999998  37889999999999999999998764

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.98  E-value=1.7e-32  Score=213.45  Aligned_cols=154  Identities=14%  Similarity=0.155  Sum_probs=111.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH---------HhhCce
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL---------AQIGCF   68 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~---------~~~g~~   68 (185)
                      ++++++...|     +.+.+++ +||++++|++++|+||||||||||+|+|        |.+.+.         ..++ |
T Consensus         2 l~~~~l~~~~-----~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~-~   74 (195)
T PRK13541          2 LSLHQLQFNI-----EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCT-Y   74 (195)
T ss_pred             eEEEEeeEEE-----CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEE-e
Confidence            4566665444     1244555 9999999999999999999999999999        433221         1234 7


Q ss_pred             ecCCCCC---cc----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297          69 VPCDSAT---IS----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT  128 (185)
Q Consensus        69 v~~~~~~---~~----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~  128 (185)
                      ++|....   .+                .+.++++.+++.+..++++++||+||+||+++|+++ .+|+++|||||++|+
T Consensus        75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~L  154 (195)
T PRK13541         75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNL  154 (195)
T ss_pred             ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            7776421   22                134455777888788999999999999999999999 999999999997776


Q ss_pred             CcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccc
Q psy5297         129 STFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVI  168 (185)
Q Consensus       129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~  168 (185)
                      |+.....+...+ +...+ .+.|+|++||+.+....+|.+
T Consensus       155 D~~~~~~l~~~l-~~~~~-~~~tiii~sh~~~~i~~~~~~  192 (195)
T PRK13541        155 SKENRDLLNNLI-VMKAN-SGGIVLLSSHLESSIKSAQIL  192 (195)
T ss_pred             CHHHHHHHHHHH-HHHHh-CCCEEEEEeCCccccchhhee
Confidence            665544444433 44444 589999999995444446543

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.97  E-value=1.4e-32  Score=222.38  Aligned_cols=152  Identities=19%  Similarity=0.172  Sum_probs=117.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-----------HHH-------------hh-Ccee
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-----------FLA-------------QI-GCFV   69 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-----------~~~-------------~~-g~~v   69 (185)
                      +.+++|+|+ +++|++++|+||||||||||||+|        |.|.           +..             .. .+|+
T Consensus        14 ~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~   92 (255)
T cd03236          14 SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK   92 (255)
T ss_pred             chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence            358999995 999999999999999999999999        6653           100             01 1255


Q ss_pred             cCCCCCc------------------chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297          70 PCDSATI------------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST  130 (185)
Q Consensus        70 ~~~~~~~------------------~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~  130 (185)
                      ||....+                  ..+.++++.+++.+..++.+.+||+|||||+++|+++ .+|+++|||||++++|+
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~  172 (255)
T cd03236          93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI  172 (255)
T ss_pred             cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence            5543211                  1355677888998888999999999999999999999 99999999999766666


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      .....+.+.+ +.+++ .+.++|++||+ ..+..+||++++|+ |++.+
T Consensus       173 ~~~~~l~~~l-~~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~  218 (255)
T cd03236         173 KQRLNAARLI-RELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA  218 (255)
T ss_pred             HHHHHHHHHH-HHHHh-cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence            5555555544 66665 48999999999 77777999999995 55554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0055|consensus

Probab=99.97  E-value=2.4e-32  Score=252.23  Aligned_cols=175  Identities=15%  Similarity=0.132  Sum_probs=133.6

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFL   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~   62 (185)
                      ..++++|++..|...++  -.+|+++||++++|+.++|+|||||||||++++|        |.|             +++
T Consensus       349 g~ief~nV~FsYPsRpd--v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr  426 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRPD--VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR  426 (1228)
T ss_pred             cceEEEEEEecCCCCCc--chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence            45777888777766432  5699999999999999999999999999999999        443             346


Q ss_pred             HhhCceecCCCCCc--chhhHH---------------HhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-
Q psy5297          63 AQIGCFVPCDSATI--SVVDQI---------------FTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        63 ~~~g~~v~~~~~~~--~~~~~~---------------l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      .++| .|.|+|..+  ++.+++               .+..+..           -...++--+||||||||++|||++ 
T Consensus       427 ~~ig-lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv  505 (1228)
T KOG0055|consen  427 SQIG-LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV  505 (1228)
T ss_pred             hhcC-eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence            7788 999998333  333322               2222211           112233446999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      .+|++|||||||+++|+.+.....+.+ ++..+  |.|.|+++|. ..+.. +|++++|++|++++.|+++|+
T Consensus       506 ~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~~--grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~EL  574 (1228)
T KOG0055|consen  506 RNPKILLLDEATSALDAESERVVQEAL-DKASK--GRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDEL  574 (1228)
T ss_pred             hCCCEEEecCcccccCHHHHHHHHHHH-HHhhc--CCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHH
Confidence            999999999998888777755444444 66654  8899999998 55555 999999999999999998764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.97  E-value=5.6e-32  Score=225.63  Aligned_cols=181  Identities=16%  Similarity=0.118  Sum_probs=143.5

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------------HHHHH------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------------GVSVF------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------------G~i~~------   61 (185)
                      |+.+.+.++|+...|-. .++...++++|||++.+||.++|+|.+|||||...+.|             |.|.+      
T Consensus         2 ~~~~lL~v~nLsV~f~~-~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll   80 (534)
T COG4172           2 MTMPLLSIRNLSVAFHQ-EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL   80 (534)
T ss_pred             CCCcceeeeccEEEEec-CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence            56788999998765543 33557799999999999999999999999999888777             33322      


Q ss_pred             ----------H-HhhCceecCCCCC-cc--------------------------hhhHHHhhcCccc---ccccCcCccH
Q psy5297          62 ----------L-AQIGCFVPCDSAT-IS--------------------------VVDQIFTRVGAAD---SQYRGISTFM  100 (185)
Q Consensus        62 ----------~-~~~g~~v~~~~~~-~~--------------------------~~~~~l~~~~l~~---~~~~~~~~lS  100 (185)
                                + ++++ ++||+++. +.                          ++-++++.+|+.+   .+++++.+||
T Consensus        81 ~~se~~lr~iRG~~I~-MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS  159 (534)
T COG4172          81 AASERQLRGVRGNKIG-MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS  159 (534)
T ss_pred             cCCHHHHhhhcccceE-EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence                      1 2345 99999832 11                          2445677888864   4688999999


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      ||||||+.||.|+ ++|+++|.||||..+|..-...+..+ ++.+.++.|..++++||| .-+.+++||+.+|++|++++
T Consensus       160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~L-l~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE  238 (534)
T COG4172         160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL-LKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE  238 (534)
T ss_pred             cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHH-HHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence            9999999999999 99999999999555555444444443 477777789999999999 77888999999999999999


Q ss_pred             EeccCC
Q psy5297         179 YLYHTN  184 (185)
Q Consensus       179 ~~~~~~  184 (185)
                      ++.++.
T Consensus       239 ~~~t~~  244 (534)
T COG4172         239 TGTTET  244 (534)
T ss_pred             cCcHHH
Confidence            987654

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.4e-32  Score=233.30  Aligned_cols=173  Identities=14%  Similarity=0.073  Sum_probs=131.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~   63 (185)
                      .++++|++..|   ++...++|+|+||++++||.++|+|++|||||||++++        |+|.+             +.
T Consensus       336 ~l~~~~vsF~y---~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e  412 (573)
T COG4987         336 ALELRNVSFTY---PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE  412 (573)
T ss_pred             eeeeccceeec---CCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHH
Confidence            34555554433   34445799999999999999999999999999999999        44432             22


Q ss_pred             hhCceecCCCCCcc-----------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATIS-----------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~~-----------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      .+. +++|....+.                 ...++++.+|+++           ..+..-..|||||+||++|||++ +
T Consensus       413 ~i~-vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~  491 (573)
T COG4987         413 TIS-VLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH  491 (573)
T ss_pred             HHh-hhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence            333 6777653222                 2334556666643           34455678999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.+++||||||.|+|+.....+...+.+++   +++|+|++||..--.+.||+|++|++|+++++|++++
T Consensus       492 dapl~lLDEPTegLD~~TE~~vL~ll~~~~---~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~  558 (573)
T COG4987         492 DAPLWLLDEPTEGLDPITERQVLALLFEHA---EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAE  558 (573)
T ss_pred             CCCeEEecCCcccCChhhHHHHHHHHHHHh---cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHh
Confidence            999999999988877777666655554443   3899999999977778899999999999999998765

>PLN03232 ABC transporter C family member; Provisional

Probab=99.97  E-value=7.4e-32  Score=260.17  Aligned_cols=172  Identities=13%  Similarity=0.140  Sum_probs=127.8

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|+...|   +++.+++|+|+||++++||.++|+||+|||||||+++|        |.|             .++.+
T Consensus      1235 I~f~nVsf~Y---~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232       1235 IKFEDVHLRY---RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred             EEEEEEEEEE---CCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence            5555555433   22335799999999999999999999999999999999        444             23556


Q ss_pred             hCceecCCCCCcc----------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          65 IGCFVPCDSATIS----------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ++ +|||++..++                .+.++++..++.+           .......+||+|||||++|||++ .+|
T Consensus      1312 i~-iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232       1312 LS-IIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred             cE-EECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            66 9999984332                1233455555433           23344568999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+++|......+.+.+ +...  .++|+|+++|.......||++++|++|++++.|++++
T Consensus      1391 ~ILILDEATSaLD~~Te~~Iq~~L-~~~~--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232       1391 KILVLDEATASVDVRTDSLIQRTI-REEF--KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999996666554433333333 3332  4799999999955556699999999999999998765

>PLN03130 ABC transporter C family member; Provisional

Probab=99.97  E-value=9.8e-32  Score=260.16  Aligned_cols=173  Identities=12%  Similarity=0.126  Sum_probs=128.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|+...|   +++..++|+|+||++++||.+||+||+|||||||+++|        |.|             .++.
T Consensus      1237 ~I~f~nVsf~Y---~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130       1237 SIKFEDVVLRY---RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred             cEEEEEEEEEe---CCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence            35566655444   23335799999999999999999999999999999999        444             2355


Q ss_pred             hhCceecCCCCCcc----------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          64 QIGCFVPCDSATIS----------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        64 ~~g~~v~~~~~~~~----------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      +++ +|||++..++                .+.++++..++.+           .......+||+|||||++||||+ .+
T Consensus      1314 ~Is-iVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130       1314 VLG-IIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred             ccE-EECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence            667 9999984433                1233445544433           23344568999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|......+.+.+ +...  .++|+|+++|.......||++++|++|++++.|++++
T Consensus      1393 p~ILILDEATSaLD~~Te~~Iq~~I-~~~~--~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~e 1458 (1622)
T PLN03130       1393 SKILVLDEATAAVDVRTDALIQKTI-REEF--KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPEN 1458 (1622)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHH-HHHC--CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9999999996666554433333333 3332  3799999999955556699999999999999998765

>PF00488 MutS_V: MutS domain V C-terminus

Probab=99.97  E-value=3.8e-31  Score=211.49  Aligned_cols=176  Identities=44%  Similarity=0.750  Sum_probs=142.1

Q ss_pred             CceEEEcccCCceeeec-CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhH
Q psy5297           3 TGTLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQ   81 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~-~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~   81 (185)
                      +..+.+++++||+++.. ++++++.||+.++-+...++.|+|||.+||||+||.||.+.+++|+|+|||++...++.++.
T Consensus         9 ~~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~   88 (235)
T PF00488_consen    9 EKSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDR   88 (235)
T ss_dssp             TTEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SE
T ss_pred             CCCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccE
Confidence            45799999999999876 45688999999986666899999999999999999999999999999999999999999999


Q ss_pred             HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297          82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI  161 (185)
Q Consensus        82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~  161 (185)
                      ++.+++..+......|+|..++++...+.+...+.+++|+||+++||++.|+.++.+.+++++.++.++.++++||+.++
T Consensus        89 I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l  168 (235)
T PF00488_consen   89 IFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHEL  168 (235)
T ss_dssp             EEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGG
T ss_pred             EEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchh
Confidence            99999999999999999999999999999988889999999999999999999999999999987358899999999777


Q ss_pred             HHhhccccceeeeeEEE
Q psy5297         162 ALLSRVIPTFRNVHESK  178 (185)
Q Consensus       162 ~~~~d~~~~l~~g~i~~  178 (185)
                      .++.++...++..++..
T Consensus       169 ~~~~~~~~~v~~~~~~~  185 (235)
T PF00488_consen  169 AELLERNPNVQNYHMEV  185 (235)
T ss_dssp             GGHHHHSTTEEEEEEEE
T ss_pred             HHHhhhCccccccceee
Confidence            77766555555544433

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.97  E-value=2e-31  Score=234.99  Aligned_cols=160  Identities=18%  Similarity=0.197  Sum_probs=116.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~   63 (185)
                      .++++|+...|   .++.+++++|+||++++|+.++|+||||||||||+|+|        |.|.             ++.
T Consensus       320 ~i~~~~v~f~y---~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~  396 (529)
T TIGR02857       320 SLEFSGLSVAY---PGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD  396 (529)
T ss_pred             eEEEEEEEEEC---CCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence            34555544333   22235799999999999999999999999999999999        4332             244


Q ss_pred             hhCceecCCCCCcc--h---------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATIS--V---------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~---------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ |+||++..++  +               +.++++..++.+.           ..+...+||||||||+++||++ .
T Consensus       397 ~i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~  475 (529)
T TIGR02857       397 QIA-WVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR  475 (529)
T ss_pred             heE-EEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence            566 9999973332  1               2334444554432           2334568999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF  171 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l  171 (185)
                      +|+++||||||+++|+.....+.+.+ ..+.  .++|+|++||+....+.||++++|
T Consensus       476 ~~~ililDE~ts~lD~~~~~~i~~~l-~~~~--~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       476 DAPLLLLDEPTAHLDAETEALVTEAL-RALA--QGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHH-HHhc--CCCEEEEEecCHHHHHhCCEEEeC
Confidence            99999999997776666655554433 3433  479999999996666789998765

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.97  E-value=1.4e-31  Score=228.12  Aligned_cols=162  Identities=17%  Similarity=0.179  Sum_probs=130.1

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCcc--
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATIS--   77 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~~--   77 (185)
                      ..+++++++||++.+|+.++|+||+|||||||.|+|        |.+.+             -.++| |.||+-..++  
T Consensus       347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG-YLPQdVeLF~GT  425 (580)
T COG4618         347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG-YLPQDVELFDGT  425 (580)
T ss_pred             CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC-cCcccceecCCc
Confidence            457899999999999999999999999999999999        33322             24567 9999875544  


Q ss_pred             hhhHH------------------------HhhcCc--ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297          78 VVDQI------------------------FTRVGA--ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST  130 (185)
Q Consensus        78 ~~~~~------------------------l~~~~l--~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~  130 (185)
                      +.+++                        +-++.-  +-.....-..||+|||||+++||++ .+|.+++||||-+++|.
T Consensus       426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~  505 (580)
T COG4618         426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS  505 (580)
T ss_pred             HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence            22222                        211111  1123344568999999999999999 99999999999999888


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      .-..++...+ ..+++ +|.|+|++||-..+...+|++.+|++|++..+|..+++
T Consensus       506 ~GE~AL~~Ai-~~~k~-rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV  558 (580)
T COG4618         506 EGEAALAAAI-LAAKA-RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV  558 (580)
T ss_pred             hHHHHHHHHH-HHHHH-cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence            8777777766 66666 69999999999999999999999999999999987763

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.97  E-value=6.4e-31  Score=197.82  Aligned_cols=143  Identities=17%  Similarity=0.210  Sum_probs=99.5

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMM  101 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~  101 (185)
                      +++++++||++++|++++|+||||||||||+++|....- ...|. ++............+...++.       ..+||+
T Consensus        12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~-------~~qlS~   83 (157)
T cd00267          12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGY-------VPQLSG   83 (157)
T ss_pred             eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEE-------EeeCCH
Confidence            469999999999999999999999999999999933211 11121 111100000001111111111       112999


Q ss_pred             HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297         102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      ||+||+++++++ .+|++++||||++|+|......+.+.+ ..+.+ .+.|++++||+ .++..+||+++.+++|+
T Consensus        84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l-~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267          84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL-RELAE-EGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            999999999999 999999999997776665544444433 55555 37899999999 77788899999998874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=2.4e-31  Score=254.98  Aligned_cols=159  Identities=14%  Similarity=0.127  Sum_probs=126.5

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H----------HHHH---------HHhhCceecCCCCC---cc-
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G----------VSVF---------LAQIGCFVPCDSAT---IS-   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G----------~i~~---------~~~~g~~v~~~~~~---~~-   77 (185)
                      .+.+|+|+|+++++|++++|+|||||||||||++| |          .|.+         +..++ |+||++..   .+ 
T Consensus       775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~-yv~Q~~~~~~~~Tv  853 (1394)
T TIGR00956       775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG-YVQQQDLHLPTSTV  853 (1394)
T ss_pred             CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee-eecccccCCCCCCH
Confidence            46799999999999999999999999999999999 2          2211         22345 99997521   11 


Q ss_pred             -----------------------hhhHHHhhcCcccccccCcC----ccHHHHHHHHHHHHhC-CCCe-EEEEeCCCCCC
Q psy5297          78 -----------------------VVDQIFTRVGAADSQYRGIS----TFMMEMKETATVIKKC-TENS-LVIIDELGRGT  128 (185)
Q Consensus        78 -----------------------~~~~~l~~~~l~~~~~~~~~----~lS~g~~q~~~ia~~l-~~p~-llllDEP~~g~  128 (185)
                                             .++++++.+++.+..++.++    .||+|||||++||+++ .+|+ +++|||||+|+
T Consensus       854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL  933 (1394)
T TIGR00956       854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL  933 (1394)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence                                   13456777888877788776    7999999999999999 9996 99999997777


Q ss_pred             CcCChhHHHHHHHHHHHhcCCCeEEEecCh-hH-HHHhhccccceeee-eEEEEeccC
Q psy5297         129 STFDGFGMACSIARELASNRQPFTLFATHF-HE-IALLSRVIPTFRNV-HESKYLYHT  183 (185)
Q Consensus       129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~-~~~~~d~~~~l~~g-~i~~~~~~~  183 (185)
                      |......+.+. ++.+++ .|.|||++||+ .. +.+.+|++++|++| ++++.|+++
T Consensus       934 D~~~~~~i~~~-L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~  989 (1394)
T TIGR00956       934 DSQTAWSICKL-MRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG  989 (1394)
T ss_pred             CHHHHHHHHHH-HHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence            77665555554 466665 58999999998 43 45789999999997 999998764

>PTZ00243 ABC transporter; Provisional

Probab=99.97  E-value=4.4e-31  Score=255.12  Aligned_cols=172  Identities=13%  Similarity=0.136  Sum_probs=127.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|+...|   +++...+|+|+||+|++||.++|+|++|||||||+++|        |.|             .++.+
T Consensus      1309 I~f~nVsf~Y---~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243       1309 LVFEGVQMRY---REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred             EEEEEEEEEe---CCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence            4455544333   33335699999999999999999999999999999999        444             23556


Q ss_pred             hCceecCCCCCcc----------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CC-
Q psy5297          65 IGCFVPCDSATIS----------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TE-  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~-  115 (185)
                      ++ ||||++..++                .+.++++..++.+..           ...-.+||+|||||++|||++ .+ 
T Consensus      1386 I~-iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243       1386 FS-MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred             ce-EECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence            66 9999984443                133455555554332           233467999999999999999 75 


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |++|||||||+++|......+.+.+ +...  .++|+|+++|..+....||+|++|++|++++.|++++
T Consensus      1465 ~~ILlLDEATSaLD~~te~~Iq~~L-~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243       1465 SGFILMDEATANIDPALDRQIQATV-MSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHH-HHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            8999999996665554433333333 3332  4799999999977777899999999999999998765

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.97  E-value=3.4e-31  Score=254.48  Aligned_cols=165  Identities=19%  Similarity=0.198  Sum_probs=119.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------HHH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------FLA   63 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~~~   63 (185)
                      ++++|+...|-.  ....++++|+||++++|++++|+||||||||||+++|        |.|.              ++.
T Consensus       383 I~~~nVsf~Y~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~  460 (1466)
T PTZ00265        383 IQFKNVRFHYDT--RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS  460 (1466)
T ss_pred             EEEEEEEEEcCC--CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence            455555443321  0124699999999999999999999999999999999        3332              234


Q ss_pred             hhCceecCCCCCc--chhhHH-----------------------------------------------------------
Q psy5297          64 QIGCFVPCDSATI--SVVDQI-----------------------------------------------------------   82 (185)
Q Consensus        64 ~~g~~v~~~~~~~--~~~~~~-----------------------------------------------------------   82 (185)
                      +++ ||||++..+  ++.+++                                                           
T Consensus       461 ~Ig-~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  539 (1466)
T PTZ00265        461 KIG-VVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK  539 (1466)
T ss_pred             hcc-EecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence            566 999987332  222222                                                           


Q ss_pred             -------------HhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297          83 -------------FTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA  137 (185)
Q Consensus        83 -------------l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~  137 (185)
                                   ++.+++.+.           ..+...+||||||||++|||++ .+|++|||||||+++|+.....+.
T Consensus       540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~  619 (1466)
T PTZ00265        540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ  619 (1466)
T ss_pred             ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence                         222333222           2455778999999999999999 999999999997777666555454


Q ss_pred             HHHHHHHHhcCCCeEEEecChhHHHHhhccccceeee
Q psy5297         138 CSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNV  174 (185)
Q Consensus       138 ~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g  174 (185)
                      +.+ +.+.++.|.|+|++||+....+.||++++|++|
T Consensus       620 ~~L-~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        620 KTI-NNLKGNENRITIIIAHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             HHH-HHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence            443 555543489999999995555789999999987

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.97  E-value=1.8e-30  Score=200.78  Aligned_cols=145  Identities=54%  Similarity=0.858  Sum_probs=128.4

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCe
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENS  117 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~  117 (185)
                      +++|+||||+|||||||++|.+.++++.|+|+|+....++.+++++..++..+..+++.++||+|++|...+++.+.+|+
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~   80 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS   80 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence            46899999999999999999999999999999999999999999999999999999999999999999888887778999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEecc
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      ++|+|||++|||+.+...+.+.+++.+.++.+.++|++||+.++.+++++...++++++....+.
T Consensus        81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~  145 (185)
T smart00534       81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEET  145 (185)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEec
Confidence            99999999999999888887767777765248899999999888899988777888887655443

>PLN03073 ABC transporter F family; Provisional

Probab=99.97  E-value=7.4e-31  Score=237.91  Aligned_cols=154  Identities=14%  Similarity=0.063  Sum_probs=115.1

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH----H------HH---------------------------HH
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV----S------VF---------------------------LA   63 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~----i------~~---------------------------~~   63 (185)
                      .+.+|+|+||++++|++++|+||||||||||||+| |.    +      .+                           ..
T Consensus       189 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~  268 (718)
T PLN03073        189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEE  268 (718)
T ss_pred             CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence            35699999999999999999999999999999999 31    0      00                           00


Q ss_pred             hhCceecCCCC------------------Cc-----------------------chhhHHHhhcCcc-cccccCcCccHH
Q psy5297          64 QIGCFVPCDSA------------------TI-----------------------SVVDQIFTRVGAA-DSQYRGISTFMM  101 (185)
Q Consensus        64 ~~g~~v~~~~~------------------~~-----------------------~~~~~~l~~~~l~-~~~~~~~~~lS~  101 (185)
                      .++ +++|.+.                  ..                       ..+..++..+|+. +..++++++||+
T Consensus       269 ~~~-~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSg  347 (718)
T PLN03073        269 EAQ-LVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSG  347 (718)
T ss_pred             HHH-HHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCH
Confidence            011 2222100                  00                       0122344555654 446788999999


Q ss_pred             HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE-E
Q psy5297         102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES-K  178 (185)
Q Consensus       102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~-~  178 (185)
                      |||||++||+++ .+|+++|||||   |+.+|.....+.. +.+.+ .+.|+|++||+ .++..+||++++|++|++. +
T Consensus       348 G~k~rv~LA~aL~~~p~lLlLDEP---t~~LD~~~~~~l~-~~L~~-~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~  422 (718)
T PLN03073        348 GWRMRIALARALFIEPDLLLLDEP---TNHLDLHAVLWLE-TYLLK-WPKTFIVVSHAREFLNTVVTDILHLHGQKLVTY  422 (718)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECC---CCCCCHHHHHHHH-HHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999 99999999999   6667777666643 66665 58899999999 7788899999999999996 3


Q ss_pred             Eec
Q psy5297         179 YLY  181 (185)
Q Consensus       179 ~~~  181 (185)
                      .|+
T Consensus       423 ~g~  425 (718)
T PLN03073        423 KGD  425 (718)
T ss_pred             CCC
Confidence            443

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=2.3e-31  Score=206.14  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=132.1

Q ss_pred             EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCc
Q psy5297           8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGC   67 (185)
Q Consensus         8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~   67 (185)
                      +.+....+.......+.+++++|++|.+|+|+.|+|.||||||||+++|        |.|.+            ++...+
T Consensus         4 ~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~la   83 (263)
T COG1101           4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLA   83 (263)
T ss_pred             cccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHH
Confidence            3444444444333456799999999999999999999999999999999        33322            222223


Q ss_pred             eecCCC-----CCcchhhH---------------------------HHhhc--CcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          68 FVPCDS-----ATISVVDQ---------------------------IFTRV--GAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        68 ~v~~~~-----~~~~~~~~---------------------------~l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      -|+|++     ..+++.++                           -++.+  |++..++.++.-|||||||.++++.+.
T Consensus        84 rVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt  163 (263)
T COG1101          84 RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT  163 (263)
T ss_pred             HHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh
Confidence            677876     23332222                           22332  456778899999999999999999988


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                       +.|++++|||-|+++||.....+.+.- ..+.++.+.|.+++||+ .++..+.+|.++|++|+|+.+...+
T Consensus       164 l~~pkiLLLDEHTAALDPkta~~vm~lT-~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~  234 (263)
T COG1101         164 LHPPKILLLDEHTAALDPKTAEFVMELT-AKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE  234 (263)
T ss_pred             cCCCcEEEecchhhcCCcchHHHHHHHH-HHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence             999999999997777777655555543 45555578999999999 8899999999999999999887644

>PLN03140 ABC transporter G family member; Provisional

Probab=99.97  E-value=1.2e-30  Score=250.33  Aligned_cols=158  Identities=12%  Similarity=0.075  Sum_probs=126.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH----------HHHHH----------HHhhCceecCCCCCc---c--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI----------GVSVF----------LAQIGCFVPCDSATI---S--   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i----------G~i~~----------~~~~g~~v~~~~~~~---~--   77 (185)
                      +.+|+|+|+.+++|++++|+||||||||||||+|          |.+.+          ...++ |++|++..+   +  
T Consensus       893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~ig-yv~Q~d~~~~~lTV~  971 (1470)
T PLN03140        893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISG-YCEQNDIHSPQVTVR  971 (1470)
T ss_pred             ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheE-EEccccccCCCCcHH
Confidence            4699999999999999999999999999999999          22222          12345 999975221   1  


Q ss_pred             ----------------------hhhHHHhhcCcccccccCc-----CccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297          78 ----------------------VVDQIFTRVGAADSQYRGI-----STFMMEMKETATVIKKC-TENSLVIIDELGRGTS  129 (185)
Q Consensus        78 ----------------------~~~~~l~~~~l~~~~~~~~-----~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~  129 (185)
                                            .++++++.+++.+..++.+     +.||+|||||++||+++ .+|++++|||||+|+|
T Consensus       972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140        972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence                                  1345677788877777775     58999999999999999 9999999999977777


Q ss_pred             cCChhHHHHHHHHHHHhcCCCeEEEecCh-h-HHHHhhccccceee-eeEEEEeccC
Q psy5297         130 TFDGFGMACSIARELASNRQPFTLFATHF-H-EIALLSRVIPTFRN-VHESKYLYHT  183 (185)
Q Consensus       130 ~~d~~~~~~~il~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~-g~i~~~~~~~  183 (185)
                      +.....+.+.+ +.+++ .|.|||++||+ . ++.+.+|++++|++ |++++.|+.+
T Consensus      1052 ~~~a~~v~~~L-~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1052 ARAAAIVMRTV-RNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred             HHHHHHHHHHH-HHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence            76655555544 66766 58999999998 4 56789999999996 8999998753

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=99.97  E-value=4.3e-30  Score=236.57  Aligned_cols=177  Identities=48%  Similarity=0.786  Sum_probs=161.3

Q ss_pred             CceEEEcccCCceeeec-CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhH
Q psy5297           3 TGTLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQ   81 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~-~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~   81 (185)
                      ++.+.+++++||+++.. ....+|+||++++ +.+.++.|+|||++||||+||.+|.+.+++|+|+|||+....+++++.
T Consensus       574 ~~~l~i~~~rHP~le~~~~~~~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~  652 (854)
T PRK05399        574 DPGIDIEEGRHPVVEQVLGGEPFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDR  652 (854)
T ss_pred             CCCEEEEeccCcEEecccCCCceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCe
Confidence            35689999999999864 3457999999999 778999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297          82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI  161 (185)
Q Consensus        82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~  161 (185)
                      ++.++|..+......|+|+.++.+...+.+..++++++|+|||++||++.|+.++.+.+++++.+..+++++++||++++
T Consensus       653 I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el  732 (854)
T PRK05399        653 IFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHEL  732 (854)
T ss_pred             eeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHH
Confidence            99999999999999999999999999998888899999999999999999999999999999987446899999999999


Q ss_pred             HHhhccccceeeeeEEEEe
Q psy5297         162 ALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       162 ~~~~d~~~~l~~g~i~~~~  180 (185)
                      .+++++..-+.+.++....
T Consensus       733 ~~l~~~~~~v~n~~m~~~~  751 (854)
T PRK05399        733 TELEEKLPGVKNVHVAVKE  751 (854)
T ss_pred             HHHhhhcCCeEEEEEEEEE
Confidence            9999988778888876553

>PLN03232 ABC transporter C family member; Provisional

Probab=99.97  E-value=2.5e-31  Score=256.53  Aligned_cols=159  Identities=12%  Similarity=0.045  Sum_probs=120.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-HHHHhhCceecCCCCCcc--h-------------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-VFLAQIGCFVPCDSATIS--V-------------   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-~~~~~~g~~v~~~~~~~~--~-------------   78 (185)
                      +++|+|+||++++|+.++|+||+|||||||+++|        |.+ .++.+++ |+||++..++  +             
T Consensus       630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Ia-yv~Q~p~Lf~gTIreNI~fg~~~~~e  708 (1495)
T PLN03232        630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVA-YVPQVSWIFNATVRENILFGSDFESE  708 (1495)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEE-EEcCccccccccHHHHhhcCCccCHH
Confidence            5799999999999999999999999999999999        322 2344566 9999984433  2             


Q ss_pred             -hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH
Q psy5297          79 -VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA  145 (185)
Q Consensus        79 -~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~  145 (185)
                       +.++++..++.+.           ...+-.+||||||||++||||+ .+|+++|||||++++|+.....+.+.++....
T Consensus       709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l  788 (1495)
T PLN03232        709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL  788 (1495)
T ss_pred             HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence             3334444444322           2334457999999999999999 99999999999666555444444333333332


Q ss_pred             hcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         146 SNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       146 ~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                        .++|+|++||.......||++++|++|+++..|+.++
T Consensus       789 --~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e  825 (1495)
T PLN03232        789 --KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE  825 (1495)
T ss_pred             --cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence              4789999999966778899999999999999987654

>PTZ00243 ABC transporter; Provisional

Probab=99.97  E-value=3.3e-31  Score=256.04  Aligned_cols=160  Identities=13%  Similarity=0.095  Sum_probs=121.0

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCcc--hhh-----------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATIS--VVD-----------   80 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~~--~~~-----------   80 (185)
                      .+++++|+||++++|++++|+|||||||||||++|        |.+.+..+++ |+||++..+.  +.+           
T Consensus       672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~-yv~Q~~~l~~~Tv~enI~~~~~~~~~  750 (1560)
T PTZ00243        672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIA-YVPQQAWIMNATVRGNILFFDEEDAA  750 (1560)
T ss_pred             CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEE-EEeCCCccCCCcHHHHHHcCChhhHH
Confidence            35699999999999999999999999999999999        5555555666 9999874322  211           


Q ss_pred             ---HHHh---------hc--CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH
Q psy5297          81 ---QIFT---------RV--GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA  145 (185)
Q Consensus        81 ---~~l~---------~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~  145 (185)
                         +.++         .+  |+....+++..+||||||||++|||++ .+|+++|||||++++|+.....+.+.++....
T Consensus       751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~  830 (1560)
T PTZ00243        751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL  830 (1560)
T ss_pred             HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence               1222         12  333345677899999999999999999 99999999999666555444444332222222


Q ss_pred             hcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         146 SNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       146 ~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                        .++|+|++||+.+....||++++|++|++...|+.++
T Consensus       831 --~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~  867 (1560)
T PTZ00243        831 --AGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD  867 (1560)
T ss_pred             --CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHH
Confidence              4899999999955567899999999999998887653

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.97  E-value=1.1e-30  Score=252.29  Aligned_cols=173  Identities=10%  Similarity=0.057  Sum_probs=128.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|+...|   +++..++|+|+||++++||.+||+|++|||||||+++|        |.|             .++.
T Consensus      1284 ~I~f~nVsf~Y---~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957      1284 RVEFRNYCLRY---REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred             cEEEEEEEEEe---CCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence            35555554333   22334799999999999999999999999999999999        443             2355


Q ss_pred             hhCceecCCCCCcc----------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          64 QIGCFVPCDSATIS----------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        64 ~~g~~v~~~~~~~~----------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      +++ ++||++..++                .+.++++..++.+           .......+||+|||||++|||++ .+
T Consensus      1361 ~i~-iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957      1361 KIT-IIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred             cCe-EECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence            667 9999984333                1233445444432           23344467999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|......+.+.+ +...  .++|+|+++|.......||++++|++|++++.|++++
T Consensus      1440 ~~ILiLDEaTSalD~~Te~~Iq~~l-~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957      1440 TKILVLDEATAAVDLETDNLIQSTI-RTQF--EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999996666654433333333 3332  4799999999966677799999999999999998865

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.97  E-value=8.6e-31  Score=251.75  Aligned_cols=175  Identities=12%  Similarity=0.061  Sum_probs=127.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH--------------------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV--------------------------   58 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~--------------------------   58 (185)
                      ++++|++..|...  ...++|+|+||++++|+.++|+||+|||||||+++| |.                          
T Consensus      1166 I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265       1166 IEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred             EEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence            5666665554321  135799999999999999999999999999999999 21                          


Q ss_pred             -----------------------------------H-------------HHHHhhCceecCCCCCcc--h----------
Q psy5297          59 -----------------------------------S-------------VFLAQIGCFVPCDSATIS--V----------   78 (185)
Q Consensus        59 -----------------------------------i-------------~~~~~~g~~v~~~~~~~~--~----------   78 (185)
                                                         |             .++.+++ ||||++..++  +          
T Consensus      1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~-~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265       1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS-IVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhcc-EeCCCCccccccHHHHHhcCCCC
Confidence                                               1             1134556 9999984443  2          


Q ss_pred             -----hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHH
Q psy5297          79 -----VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIA  141 (185)
Q Consensus        79 -----~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il  141 (185)
                           +.++++..++.+.           ....-..||||||||++||||+ .+|++||||||||++|+.....+.+.+ 
T Consensus      1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L- 1401 (1466)
T PTZ00265       1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI- 1401 (1466)
T ss_pred             CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-
Confidence                 2333444444332           2334567999999999999999 999999999997776665545444444 


Q ss_pred             HHHHhcCCCeEEEecChhHHHHhhccccceee----eeEE-EEeccCC
Q psy5297         142 RELASNRQPFTLFATHFHEIALLSRVIPTFRN----VHES-KYLYHTN  184 (185)
Q Consensus       142 ~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~----g~i~-~~~~~~~  184 (185)
                      ..+....+.|+|++||.....+.||++++|++    |+++ +.|+.++
T Consensus      1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265       1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred             HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence            44431248999999999777778999999999    8954 7887654

>PRK13409 putative ATPase RIL; Provisional

Probab=99.97  E-value=6.3e-31  Score=234.22  Aligned_cols=147  Identities=19%  Similarity=0.189  Sum_probs=115.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-----------HHH-------------hh-Ccee
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-----------FLA-------------QI-GCFV   69 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-----------~~~-------------~~-g~~v   69 (185)
                      .++|++++ .+++|++++|+||||||||||+|+|        |.+.           +.+             .. ..+.
T Consensus        87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~  165 (590)
T PRK13409         87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK  165 (590)
T ss_pred             ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence            57999999 8999999999999999999999999        6653           210             01 0133


Q ss_pred             cCCCCCc------------------chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297          70 PCDSATI------------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST  130 (185)
Q Consensus        70 ~~~~~~~------------------~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~  130 (185)
                      +|.....                  ..++++++.+++.+..++++++||+||+||++||+++ .+|+++||||||+++|+
T Consensus       166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~  245 (590)
T PRK13409        166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI  245 (590)
T ss_pred             ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence            4422111                  1245677888998889999999999999999999999 99999999999666665


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN  173 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~  173 (185)
                      .....+.+. ++.+++  +.+||++||+ .++..+||+++++++
T Consensus       246 ~~~~~l~~~-i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~  286 (590)
T PRK13409        246 RQRLNVARL-IRELAE--GKYVLVVEHDLAVLDYLADNVHIAYG  286 (590)
T ss_pred             HHHHHHHHH-HHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            554444443 366654  8999999999 888899999999976

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.97  E-value=1.2e-30  Score=251.61  Aligned_cols=172  Identities=12%  Similarity=0.101  Sum_probs=127.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHH-------------HHHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVS-------------VFLAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i-------------~~~~~~   65 (185)
                      ++++|+...|   .++..++|+|+||+|++|+.++|+|++|||||||+++|       |.|             .++.++
T Consensus      1218 I~f~nVs~~Y---~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271      1218 MDVQGLTAKY---TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred             EEEEEEEEEe---CCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence            4445444333   22346799999999999999999999999999999999       333             234556


Q ss_pred             CceecCCCCCcc----------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          66 GCFVPCDSATIS----------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        66 g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      + |+||++..++                .+.++++..++.+..           ...-..||+|||||++|||++ .+|+
T Consensus      1295 s-~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271      1295 G-VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred             E-EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC
Confidence            6 9999984443                233456666654322           223347999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|||||||+++|......+.+.+ +...  .++|||++||.......||++++|++|++++.|++.+
T Consensus      1374 ILlLDEaTS~lD~~Te~~I~~~L-~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271      1374 ILLLDEPSAHLDPVTLQIIRKTL-KQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999996666554433333333 3322  4799999999966666799999999999999998764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.97  E-value=4.7e-31  Score=255.46  Aligned_cols=174  Identities=10%  Similarity=0.033  Sum_probs=126.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH--------HHHHHhhCceecCCCCCc
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV--------SVFLAQIGCFVPCDSATI   76 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~--------i~~~~~~g~~v~~~~~~~   76 (185)
                      ++++|+...|-.  ...+++|+|+||++++|+.++|+||+|||||||+++| |.        +.++.+++ |+||++..+
T Consensus       615 I~~~nvsf~y~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Ia-yv~Q~p~Lf  691 (1622)
T PLN03130        615 ISIKNGYFSWDS--KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVA-YVPQVSWIF  691 (1622)
T ss_pred             eEEEeeEEEccC--CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEE-EEcCccccC
Confidence            555555443311  1235799999999999999999999999999999999 43        33344566 999998443


Q ss_pred             c----------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297          77 S----------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT  128 (185)
Q Consensus        77 ~----------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~  128 (185)
                      .                .++++++..++.+.           ...+-.+||||||||++||||+ .+|+++|||||++++
T Consensus       692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL  771 (1622)
T PLN03130        692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL  771 (1622)
T ss_pred             CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence            2                23344444444322           2344557999999999999999 999999999995555


Q ss_pred             CcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         129 STFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |......+.+..+..+.  .++|+|++||.......||++++|++|++...|+.++
T Consensus       772 D~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e  825 (1622)
T PLN03130        772 DAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE  825 (1622)
T ss_pred             CHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            55443333332233332  4799999999977778899999999999999887653

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.97  E-value=4.4e-31  Score=254.63  Aligned_cols=159  Identities=16%  Similarity=0.109  Sum_probs=121.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc--chhhHH----------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI--SVVDQI----------   82 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~--~~~~~~----------   82 (185)
                      +++++|+||++++|++++|+|||||||||||++|        |.|.+.+.++ |+||++..+  ++.+++          
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~ia-yv~Q~~~l~~~Ti~eNI~~g~~~~~~~  517 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRIS-FSPQTSWIMPGTIKDNIIFGLSYDEYR  517 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEE-EEeCCCccCCccHHHHHHhccccchHH
Confidence            4689999999999999999999999999999999        5555555666 999987433  222222          


Q ss_pred             ----HhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297          83 ----FTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS  146 (185)
Q Consensus        83 ----l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~  146 (185)
                          ++..++.+           ....+..+||||||||++|||++ .+|+++|||||++++|......+.+.++..+. 
T Consensus       518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-  596 (1490)
T TIGR01271       518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-  596 (1490)
T ss_pred             HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence                22222221           13445679999999999999999 99999999999777766665555543334443 


Q ss_pred             cCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         147 NRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       147 ~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .++|+|++||+.+....||++++|++|++...|++++
T Consensus       597 -~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~  633 (1490)
T TIGR01271       597 -SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE  633 (1490)
T ss_pred             -cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHH
Confidence             3899999999944455699999999999998887543

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=228.16  Aligned_cols=150  Identities=18%  Similarity=0.241  Sum_probs=122.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCCCCc----c-----------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDSATI----S-----------   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~~~~----~-----------   77 (185)
                      +.+++++||.+.+|+.++|+||||+|||||||+|        |.|.+..  ++| |.+|+...+    +           
T Consensus       335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~t~~d~l~~~~~~  413 (530)
T COG0488         335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDKTVLEELSEGFPD  413 (530)
T ss_pred             ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccCcHHHHHHhhCcc
Confidence            6799999999999999999999999999999999        3333322  345 888876221    1           


Q ss_pred             ----hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe
Q psy5297          78 ----VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF  151 (185)
Q Consensus        78 ----~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~  151 (185)
                          .+..++.+|++. +...++++.||||||.|+.+|+.+ .+|.+||||||   |+.+|.+++.. +-+.|.. ...|
T Consensus       414 ~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP---TNhLDi~s~~a-Le~aL~~-f~Gt  488 (530)
T COG0488         414 GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP---TNHLDIESLEA-LEEALLD-FEGT  488 (530)
T ss_pred             ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC---CccCCHHHHHH-HHHHHHh-CCCe
Confidence                244566777775 456899999999999999999999 99999999999   99999887766 3366665 7889


Q ss_pred             EEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         152 TLFATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       152 vii~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      ||+|||| ..+..+|++++.+.+ ++...
T Consensus       489 vl~VSHDr~Fl~~va~~i~~~~~-~~~~~  516 (530)
T COG0488         489 VLLVSHDRYFLDRVATRIWLVED-KVEEF  516 (530)
T ss_pred             EEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence            9999999 888999999999998 55443

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.97  E-value=9.5e-30  Score=232.19  Aligned_cols=172  Identities=30%  Similarity=0.496  Sum_probs=150.6

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-CCcchhhH
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQ   81 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-~~~~~~~~   81 (185)
                      ++.+.+++++||++..   .++|++|+++. ..+.+++|+|||++||||+||++|.+.+++++|+|||+.. ..+++++.
T Consensus       298 ~~~i~l~~~rHPll~~---~~~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~  373 (782)
T PRK00409        298 EGKIDLRQARHPLLDG---EKVVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE  373 (782)
T ss_pred             CCcEEEcCcCCceecc---CceECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce
Confidence            3468899999999963   46899999997 4578999999999999999999999999999999999986 67899999


Q ss_pred             HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297          82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI  161 (185)
Q Consensus        82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~  161 (185)
                      ++..+|..+.....+++||+||++++.+++++.+|+++|+|||++|||+.++..+...+++.+.+ .++++|++||+.++
T Consensus       374 i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el  452 (782)
T PRK00409        374 IFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKEL  452 (782)
T ss_pred             EEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHH
Confidence            99999988889999999999999999999999999999999999999999999888777788876 58999999999777


Q ss_pred             HHhhccccceeeeeEEEE
Q psy5297         162 ALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       162 ~~~~d~~~~l~~g~i~~~  179 (185)
                      ..++.....+.++.+.+.
T Consensus       453 ~~~~~~~~~v~~~~~~~d  470 (782)
T PRK00409        453 KALMYNREGVENASVEFD  470 (782)
T ss_pred             HHHHhcCCCeEEEEEEEe
Confidence            666544455567777553

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.97  E-value=2.3e-30  Score=233.55  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=110.8

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--HHhhCceecCCCCCc--c-------------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--LAQIGCFVPCDSATI--S-------------   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--~~~~g~~v~~~~~~~--~-------------   77 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.+.+  ..+++ |+||++..+  +             
T Consensus       465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~  543 (659)
T TIGR00954       465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLF-YVPQRPYMTLGTLRDQIIYPDSSED  543 (659)
T ss_pred             CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEE-EECCCCCCCCcCHHHHHhcCCChhh
Confidence            4799999999999999999999999999999999        44333  22345 999986211  1             


Q ss_pred             ---------hhhHHHhhcCcccccccC---------cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          78 ---------VVDQIFTRVGAADSQYRG---------ISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        78 ---------~~~~~l~~~~l~~~~~~~---------~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                               .+.++++.+++.+..+++         ..+||+|||||++|||++ .+|+++||||||++   +|.....+
T Consensus       544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~---LD~~~~~~  620 (659)
T TIGR00954       544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA---VSVDVEGY  620 (659)
T ss_pred             hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC---CCHHHHHH
Confidence                     123456667776655543         378999999999999999 99999999999555   55443333


Q ss_pred             HHHHHHHhcCCCeEEEecChhHHHHhhcccccee
Q psy5297         139 SIARELASNRQPFTLFATHFHEIALLSRVIPTFR  172 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~  172 (185)
                       +.+.+++ .+.|+|++||+.+..+.||++++++
T Consensus       621 -l~~~l~~-~~~tvI~isH~~~~~~~~d~il~l~  652 (659)
T TIGR00954       621 -MYRLCRE-FGITLFSVSHRKSLWKYHEYLLYMD  652 (659)
T ss_pred             -HHHHHHH-cCCEEEEEeCchHHHHhCCEEEEEe
Confidence             3355555 5899999999966678999999996

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.97  E-value=7.1e-31  Score=253.71  Aligned_cols=161  Identities=13%  Similarity=0.086  Sum_probs=118.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc--chhh------------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI--SVVD------------   80 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~--~~~~------------   80 (185)
                      +++++|+||++++|++++|+||||||||||+++|        |.+.+.++++ |+||++..+  ++.+            
T Consensus       651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~-yv~Q~~~l~~~Ti~eNI~~g~~~~~~~  729 (1522)
T TIGR00957       651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVA-YVPQQAWIQNDSLRENILFGKALNEKY  729 (1522)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEE-EEcCCccccCCcHHHHhhcCCccCHHH
Confidence            5699999999999999999999999999999999        5555555666 999987432  2222            


Q ss_pred             --HHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297          81 --QIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS  146 (185)
Q Consensus        81 --~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~  146 (185)
                        ++++..++.           ....++..+||||||||++|||++ .+|+++|||||++++|+.....+.+.+......
T Consensus       730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~  809 (1522)
T TIGR00957       730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV  809 (1522)
T ss_pred             HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh
Confidence              222222221           123566789999999999999999 999999999996665554444443333221111


Q ss_pred             cCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         147 NRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       147 ~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ..++|+|++||+.+....||++++|++|++...|+.++
T Consensus       810 ~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~  847 (1522)
T TIGR00957       810 LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQE  847 (1522)
T ss_pred             hcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHH
Confidence            14789999999955555699999999999998887543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.97  E-value=8.4e-31  Score=231.05  Aligned_cols=145  Identities=16%  Similarity=0.145  Sum_probs=103.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~   65 (185)
                      ++++|+...|   .+ .+.+|+|+||++++|+.++|+||||||||||+|+|        |.|.            ++.++
T Consensus       335 I~~~~vsf~Y---~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i  410 (529)
T TIGR02868       335 LELRDLSFGY---PG-SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI  410 (529)
T ss_pred             EEEEEEEEec---CC-CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence            4455544433   11 24699999999999999999999999999999999        4442            23456


Q ss_pred             CceecCCCCCcc-----------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          66 GCFVPCDSATIS-----------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        66 g~~v~~~~~~~~-----------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      + ||||++..++                 .+.++++..++++..           ...-..||||||||++|||++ .+|
T Consensus       411 ~-~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~  489 (529)
T TIGR02868       411 S-VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA  489 (529)
T ss_pred             E-EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence            6 9999984333                 233455555554332           233457999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +++||||||+++|+.....+.+.+ ..+.  .++|+|++||.
T Consensus       490 ~iliLDE~TSaLD~~te~~I~~~l-~~~~--~~~TvIiItHr  528 (529)
T TIGR02868       490 PILLLDEPTEHLDAGTESELLEDL-LAAL--SGKTVVVITHH  528 (529)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHH-HHhc--CCCEEEEEecC
Confidence            999999996665554433333333 3322  47999999995

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.96  E-value=2.3e-30  Score=248.19  Aligned_cols=161  Identities=11%  Similarity=0.065  Sum_probs=127.1

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH-----------HHH------------HHhhCceecCCCCCc-
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV-----------SVF------------LAQIGCFVPCDSATI-   76 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~-----------i~~------------~~~~g~~v~~~~~~~-   76 (185)
                      .+.+|+|+|+.+++||+++|+||||||||||||+| |.           |.+            +..++ |++|+...+ 
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~-yv~Q~d~~~~  151 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVV-YNAETDVHFP  151 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeE-EeccccccCC
Confidence            35699999999999999999999999999999999 32           111            11234 888875211 


Q ss_pred             --ch-----------------------------hhHHHhhcCcccccccC-----cCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297          77 --SV-----------------------------VDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIKKC-TENSLV  119 (185)
Q Consensus        77 --~~-----------------------------~~~~l~~~~l~~~~~~~-----~~~lS~g~~q~~~ia~~l-~~p~ll  119 (185)
                        ++                             .+.+++.+|+.+..+++     ++.||||||||++||+++ .+|+++
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl  231 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ  231 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence              11                             13356778887766554     467999999999999999 999999


Q ss_pred             EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|||||+|+|+.....+.+.+ +.++++.|.|+|+++|+  .++.+++|++++|++|++++.|++++
T Consensus       232 llDEPTsgLD~~~~~~i~~~L-~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~  297 (1394)
T TIGR00956       232 CWDNATRGLDSATALEFIRAL-KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK  297 (1394)
T ss_pred             EEeCCCCCcCHHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHH
Confidence            999998887777666666644 67765458999999997  57889999999999999999987653

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.96  E-value=5.7e-29  Score=194.50  Aligned_cols=161  Identities=30%  Similarity=0.445  Sum_probs=119.6

Q ss_pred             EEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhc
Q psy5297           7 VLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV   86 (185)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~   86 (185)
                      ++++++||+++   ..+++++|++|+.  |++++|+||||||||||+|+|+...+.++.|.++|+....+. .+.++..+
T Consensus         1 ~~~~~~hp~~~---~~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~   74 (199)
T cd03283           1 EAKNLGHPLIG---REKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSI   74 (199)
T ss_pred             CCcccCCCeec---CCCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEec
Confidence            36899999998   2468999999975  699999999999999999999877778889989988775555 45556555


Q ss_pred             CcccccccCcCccHHHHHHHHHHHHhCC--CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297          87 GAADSQYRGISTFMMEMKETATVIKKCT--ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus        87 ~l~~~~~~~~~~lS~g~~q~~~ia~~l~--~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      ...+......+.+..++++...+...+.  +|+++|+|||++|+|+.+...+.+.+++.+.+ .+.++|++||+.+....
T Consensus        75 ~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~  153 (199)
T cd03283          75 RVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADL  153 (199)
T ss_pred             cchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHh
Confidence            5555554445555555544444555555  99999999999999998877776655677776 58999999999555554


Q ss_pred             hccccceeee
Q psy5297         165 SRVIPTFRNV  174 (185)
Q Consensus       165 ~d~~~~l~~g  174 (185)
                      .+....+.+.
T Consensus       154 ~~~~~~v~~~  163 (199)
T cd03283         154 LDLDSAVRNY  163 (199)
T ss_pred             hhcCCCeEEE
Confidence            4333333333

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=99.96  E-value=1.7e-29  Score=231.91  Aligned_cols=176  Identities=46%  Similarity=0.761  Sum_probs=159.0

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHH
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI   82 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~   82 (185)
                      ++.+.+++++||+++......+|.||++++ +...++.|+|||++||||+||.+|.+.+++|+|+|||+....+++++.+
T Consensus       560 ~~~i~i~~~RHP~le~~~~~~~VpNdi~l~-~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~I  638 (840)
T TIGR01070       560 DPQLRIREGRHPVVEQVLRTPFVPNDLEMA-HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRI  638 (840)
T ss_pred             CCcEEEEeeECHHHHhccCCCeEeeeeecC-CCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEE
Confidence            456899999999987433346999999998 4568999999999999999999999999999999999999999999999


Q ss_pred             HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297          83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA  162 (185)
Q Consensus        83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~  162 (185)
                      +.++|..+......|+|+.+|++...|.+..++++++|+||+++||++.|+.++.+.+++++.+..++.++++||++++.
T Consensus       639 ftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~  718 (840)
T TIGR01070       639 FTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT  718 (840)
T ss_pred             EEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH
Confidence            99999999999999999999999999999888899999999999999999999999998998864688999999999999


Q ss_pred             HhhccccceeeeeEEEE
Q psy5297         163 LLSRVIPTFRNVHESKY  179 (185)
Q Consensus       163 ~~~d~~~~l~~g~i~~~  179 (185)
                      .+++....+.+.++...
T Consensus       719 ~l~~~~~~v~n~~~~~~  735 (840)
T TIGR01070       719 ALEESLPGLKNVHVAAL  735 (840)
T ss_pred             HHhhhCCCeEEEEEEEE
Confidence            88887777777777553

>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

Probab=99.96  E-value=3.6e-29  Score=228.45  Aligned_cols=177  Identities=47%  Similarity=0.746  Sum_probs=162.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR   85 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~   85 (185)
                      +.+++.+||+++..-...+|.||++++- .++++.|+|||+|||||+||.+|.+.+++|+|+|||++...+++++.++.+
T Consensus       578 l~i~~gRHPvvE~~~~~~fVpNd~~L~~-~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTR  656 (843)
T COG0249         578 LEIKEGRHPVVEAVLDNGFVPNDIDLSG-NRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTR  656 (843)
T ss_pred             EEEEecCcchhhhhccCCcccCceeeCC-CceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeec
Confidence            8999999999986543349999999985 689999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      +|..|.+....|+|..+|.+...|....++.+++||||.++||+..|+-++.|.+++++.+..++.++++||++++.++.
T Consensus       657 iGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~  736 (843)
T COG0249         657 IGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELE  736 (843)
T ss_pred             ccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhh
Confidence            99999999999999999999999999998888999999999999999999999999999975589999999999999999


Q ss_pred             ccccceeeeeEEEEeccC
Q psy5297         166 RVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       166 d~~~~l~~g~i~~~~~~~  183 (185)
                      ++...+.|.++......+
T Consensus       737 ~~~~~v~N~h~~~~e~~~  754 (843)
T COG0249         737 EKLPQVKNYHMSAVEEGG  754 (843)
T ss_pred             hcccccceeEEEEEEcCC
Confidence            998878877776544433

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.96  E-value=1.2e-28  Score=194.53  Aligned_cols=172  Identities=38%  Similarity=0.616  Sum_probs=135.6

Q ss_pred             EEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhc
Q psy5297           7 VLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV   86 (185)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~   86 (185)
                      ++++++||+++.. ..++|.||++++-..+++++|+||||+|||||||.|+.+.++++.|.++|.....+..+++++..+
T Consensus         1 ~i~~~rHPll~~~-~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l   79 (213)
T cd03281           1 EIQGGRHPLLELF-VDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRM   79 (213)
T ss_pred             CcccccCCEEecc-CCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeee
Confidence            3688999999752 246899999997443489999999999999999999988777999999999988888889998888


Q ss_pred             CcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc--CCCeEEEecChhHHHHh
Q psy5297          87 GAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASN--RQPFTLFATHFHEIALL  164 (185)
Q Consensus        87 ~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~--~~~~vii~tH~~~~~~~  164 (185)
                      +-.+......++|+..+++...+...+.+|+++|+|||++|||+.+...+...+++++.+.  .+.++|++||+.++.+.
T Consensus        80 ~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281          80 SSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             CCccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            8877888888999888865555444449999999999999999998888877666787652  13589999999655544


Q ss_pred             hc--cccceeeeeEEEE
Q psy5297         165 SR--VIPTFRNVHESKY  179 (185)
Q Consensus       165 ~d--~~~~l~~g~i~~~  179 (185)
                      ..  .-..+.+.++...
T Consensus       160 ~~~~~~~~~~~~~~~~~  176 (213)
T cd03281         160 SLLPERLKIKFLTMEVL  176 (213)
T ss_pred             hhhccCCceEEEEEEEE
Confidence            32  3344556666543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0059|consensus

Probab=99.96  E-value=9.4e-30  Score=235.50  Aligned_cols=157  Identities=15%  Similarity=0.137  Sum_probs=134.4

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------HHHhhCceecCCCCCcc-----
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------FLAQIGCFVPCDSATIS-----   77 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~~~~~g~~v~~~~~~~~-----   77 (185)
                      +.+++|+.+++||+.|++|||||||||++|++        |.+.              ...++| |+||.....+     
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~r  658 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTGR  658 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccHH
Confidence            89999999999999999999999999999999        3332              345678 9999863222     


Q ss_pred             -------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297          78 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA  137 (185)
Q Consensus        78 -------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~  137 (185)
                                         .++.+++.+++.+..+++++.+|+|+|||+++|.++ .+|++++||||++|+||..+..+.
T Consensus       659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW  738 (885)
T KOG0059|consen  659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW  738 (885)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence                               366778899999999999999999999999999999 999999999998888886655544


Q ss_pred             HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      . ++..+++ .|..+|++||. +|.+.+|||+.+|.+|++.+.|++.+
T Consensus       739 ~-ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~  784 (885)
T KOG0059|consen  739 D-IIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQE  784 (885)
T ss_pred             H-HHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHH
Confidence            4 4577776 45699999998 89999999999999999999988654

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.96  E-value=1e-28  Score=200.04  Aligned_cols=100  Identities=14%  Similarity=0.063  Sum_probs=83.5

Q ss_pred             HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297          81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA  155 (185)
Q Consensus        81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~  155 (185)
                      ++++.+++.+ ..++++++||+||+||+.+|+++ .+   |+++|||||++|+++.+...+.+.+ +.+.+ .|.|+|++
T Consensus       151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L-~~l~~-~g~tvIii  228 (261)
T cd03271         151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVL-QRLVD-KGNTVVVI  228 (261)
T ss_pred             HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEE
Confidence            3456778877 57899999999999999999999 64   7999999998888887777666654 66665 58999999


Q ss_pred             cChhHHHHhhccccce------eeeeEEEEecc
Q psy5297         156 THFHEIALLSRVIPTF------RNVHESKYLYH  182 (185)
Q Consensus       156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~  182 (185)
                      ||+.+..+.||+++.|      ++|+++++|++
T Consensus       229 tH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         229 EHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             eCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            9995555689999999      89999998864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0055|consensus

Probab=99.96  E-value=1e-29  Score=234.93  Aligned_cols=174  Identities=13%  Similarity=0.111  Sum_probs=135.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|+...|.+..+  .+|++|+||++++|+.++|+||+||||||.+-+|        |.|             +++.
T Consensus       987 ~I~~~~V~F~YPsRP~--~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPD--VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred             EEEEeeeEeeCCCCCC--chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHH
Confidence            4677777777765433  6799999999999999999999999999999999        433             3467


Q ss_pred             hhCceecCCCCCc--chhhHHH---------------hhcC-------ccc----ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATI--SVVDQIF---------------TRVG-------AAD----SQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~--~~~~~~l---------------~~~~-------l~~----~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ .|.|+|..+  +..++++               +..+       +.+    ...++-.+||||||||++||||+ .
T Consensus      1065 ~i~-lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1065 QIG-LVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred             hcc-eeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence            778 999999433  3333332               1111       111    22344568999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|++|||||.||.+|.......++.+ ++...  |.|+|++.|.....+-||.|.++++|+|++.|+.++
T Consensus      1144 nPkILLLDEATSALDseSErvVQeAL-d~a~~--gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEAL-DRAME--GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred             CCCeeeeeccchhhhhhhHHHHHHHH-HHhhc--CCcEEEEecchhhhhcCCEEEEEECCEEEecccHHH
Confidence            99999999997777766644444443 66654  899999999988888999999999999999998765

>PLN03140 ABC transporter G family member; Provisional

Probab=99.96  E-value=7.4e-30  Score=244.84  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=126.1

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-----------HHHHH----------HHhhCceecCCCCCc---c
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-----------GVSVF----------LAQIGCFVPCDSATI---S   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-----------G~i~~----------~~~~g~~v~~~~~~~---~   77 (185)
                      ++.+|+|+|+.+++|++++|+||||||||||||+|           |.|.+          ...++ |++|+...+   +
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~-yv~Q~d~~~~~lT  255 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSA-YISQNDVHVGVMT  255 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeE-EecccccCCCcCc
Confidence            35699999999999999999999999999999999           22222          12234 888875221   1


Q ss_pred             h-------------------------------------------------------hhHHHhhcCccccc-----ccCcC
Q psy5297          78 V-------------------------------------------------------VDQIFTRVGAADSQ-----YRGIS   97 (185)
Q Consensus        78 ~-------------------------------------------------------~~~~l~~~~l~~~~-----~~~~~   97 (185)
                      +                                                       ++.+++.+|+++..     ++.++
T Consensus       256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r  335 (1470)
T PLN03140        256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR  335 (1470)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence            1                                                       12355667776544     45678


Q ss_pred             ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeee
Q psy5297          98 TFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNV  174 (185)
Q Consensus        98 ~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g  174 (185)
                      .+|||||||++||+++ .+|++++||||++|+|+.....+.+.+ +.++++.|.|+|+++|+  .++.+++|++++|++|
T Consensus       336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~L-r~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G  414 (1470)
T PLN03140        336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL-QQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG  414 (1470)
T ss_pred             CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence            9999999999999999 999999999997777776666665544 66655358999999997  5888999999999999


Q ss_pred             eEEEEeccCC
Q psy5297         175 HESKYLYHTN  184 (185)
Q Consensus       175 ~i~~~~~~~~  184 (185)
                      ++++.|+.++
T Consensus       415 ~ivy~G~~~~  424 (1470)
T PLN03140        415 QIVYQGPRDH  424 (1470)
T ss_pred             eEEEeCCHHH
Confidence            9999987654

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.2e-29  Score=188.30  Aligned_cols=166  Identities=19%  Similarity=0.222  Sum_probs=126.1

Q ss_pred             eEEEcccCCceeee-cCCc-eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------
Q psy5297           5 TLVLNQCRHPIVEL-QGGV-SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~-~~~~-~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------   61 (185)
                      .+.++++.+.|.-- ++|- -++++|+||+++.||+++|-||+|||||||||++        |+|++             
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~   83 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE   83 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence            36788888876433 3343 3699999999999999999999999999999999        44321             


Q ss_pred             -------H-HhhCceecCCCCCcc------------------------hhhHHHhhcCccc-ccccCcCccHHHHHHHHH
Q psy5297          62 -------L-AQIGCFVPCDSATIS------------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETAT  108 (185)
Q Consensus        62 -------~-~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~  108 (185)
                             + ..+| ||.|--..++                        .+..++.++++.+ .+.-.+.+||||+|||+.
T Consensus        84 pr~vl~vRr~TiG-yVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN  162 (235)
T COG4778          84 PREVLEVRRTTIG-YVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN  162 (235)
T ss_pred             hHHHHHHHHhhhH-HHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence                   2 2345 7776432222                        2556788888864 578889999999999999


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH-Hhhccccceee
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA-LLSRVIPTFRN  173 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~-~~~d~~~~l~~  173 (185)
                      |||.+ .+-+++||||||+++|....+...+++ ...+. +|+.++=+=||+++. ..|||++-|..
T Consensus       163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli-~e~Ka-~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         163 IARGFIVDYPILLLDEPTASLDATNRAVVVELI-REAKA-RGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             hhhhhhccCceEEecCCcccccccchHHHHHHH-HHHHh-cCceEEEeeccHHHHHHHhhheeeccc
Confidence            99999 999999999997776666655555544 44444 699999999997775 58999887653

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.96  E-value=6e-29  Score=194.07  Aligned_cols=139  Identities=16%  Similarity=0.151  Sum_probs=104.4

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHH-H----------------HHHH----------HhhCceecCCCCCc---
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG-V----------------SVFL----------AQIGCFVPCDSATI---   76 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG-~----------------i~~~----------~~~g~~v~~~~~~~---   76 (185)
                      +++++++++| +++|+||||||||||+++|. .                +.+.          .+++ |+||++..+   
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~vfq~~~~~~~~   91 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT-LTFDNSDGRYSI   91 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE-EEEEcCCCceeE
Confidence            7789999999 99999999999999999992 1                1111          2234 888877432   


Q ss_pred             ---chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC
Q psy5297          77 ---SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASNR  148 (185)
Q Consensus        77 ---~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~  148 (185)
                         ..++++++.   .+..++++.+||+|||||+++|+++     ..|++++||||++|+|+.....+... ++.+++  
T Consensus        92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~-l~~~~~--  165 (197)
T cd03278          92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARL-LKEFSK--  165 (197)
T ss_pred             EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcc--
Confidence               235566665   5567889999999999999999986     35699999999666655554444443 355543  


Q ss_pred             CCeEEEecChhHHHHhhccccceee
Q psy5297         149 QPFTLFATHFHEIALLSRVIPTFRN  173 (185)
Q Consensus       149 ~~~vii~tH~~~~~~~~d~~~~l~~  173 (185)
                      +.+||++||+.+..+.||+++.+..
T Consensus       166 ~~tiIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         166 ETQFIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             CCEEEEEECCHHHHhhcceEEEEEe
Confidence            6899999999555678999998764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.3e-29  Score=188.55  Aligned_cols=139  Identities=17%  Similarity=0.183  Sum_probs=103.7

Q ss_pred             ecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhC-----------ceecC---CCCC
Q psy5297          18 LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIG-----------CFVPC---DSAT   75 (185)
Q Consensus        18 ~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g-----------~~v~~---~~~~   75 (185)
                      ++.+.+.++.++||++.+||++.|.||||||||||||+|        |.|.+...-.           .|+-.   -...
T Consensus        10 ~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e   89 (209)
T COG4133          10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE   89 (209)
T ss_pred             hccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence            344667899999999999999999999999999999999        4443321000           01111   1111


Q ss_pred             cc------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297          76 IS------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM  136 (185)
Q Consensus        76 ~~------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~  136 (185)
                      ++                  .+.+.++.+|+.+..+.++.+||.|||+|++|||.. +.+++.|||||++++|......+
T Consensus        90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l  169 (209)
T COG4133          90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL  169 (209)
T ss_pred             hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence            22                  245667889999999999999999999999999999 99999999999666555444434


Q ss_pred             HHHHHHHHHhcCCCeEEEecCh
Q psy5297         137 ACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       137 ~~~il~~l~~~~~~~vii~tH~  158 (185)
                      ...+..+..  +|-.||.+||.
T Consensus       170 ~~l~~~H~~--~GGiVllttHq  189 (209)
T COG4133         170 TALMAAHAA--QGGIVLLTTHQ  189 (209)
T ss_pred             HHHHHHHhc--CCCEEEEecCC
Confidence            444444444  48889999997

>KOG0061|consensus

Probab=99.96  E-value=5e-29  Score=222.74  Aligned_cols=161  Identities=16%  Similarity=0.200  Sum_probs=135.3

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-----------HHHHH---------HHhhCceecCCCCCcc----
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-----------GVSVF---------LAQIGCFVPCDSATIS----   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-----------G~i~~---------~~~~g~~v~~~~~~~~----   77 (185)
                      .+.+|++||..+++||+.||+||+||||||||++|           |.|.+         ..+..+||.|+...++    
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence            46799999999999999999999999999999999           22222         1223349999884333    


Q ss_pred             -----------------------hhhHHHhhcCcccccccCcC-----ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297          78 -----------------------VVDQIFTRVGAADSQYRGIS-----TFMMEMKETATVIKKC-TENSLVIIDELGRGT  128 (185)
Q Consensus        78 -----------------------~~~~~l~~~~l~~~~~~~~~-----~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~  128 (185)
                                             +++++++.+|+.+..+..++     .+|||||||+++|.-+ .+|+++++||||+|+
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL  201 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL  201 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence                                   47788899999877777776     5999999999999999 999999999998888


Q ss_pred             CcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         129 STFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |......+.+. ++.++++ |+|||++=|.  .++.++-|++++|.+|++++.|++.+
T Consensus       202 DS~sA~~vv~~-Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~  257 (613)
T KOG0061|consen  202 DSFSALQVVQL-LKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRE  257 (613)
T ss_pred             chhhHHHHHHH-HHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHH
Confidence            88776666664 5888884 9999999997  78889999999999999999998754

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=3e-29  Score=185.11  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=115.9

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH-----------HHH-----------HHhhCceecCCCCCcc-
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV-----------SVF-----------LAQIGCFVPCDSATIS-   77 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~-----------i~~-----------~~~~g~~v~~~~~~~~-   77 (185)
                      +++..|.++||+|.+||++-|.||+|||||||+.-++.           +++           .+|+| +.+|++..++ 
T Consensus        13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G-iLFQD~lLFph   91 (213)
T COG4136          13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG-ILFQDALLFPH   91 (213)
T ss_pred             CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee-eeecccccccc
Confidence            45789999999999999999999999999999998822           211           35778 8888885444 


Q ss_pred             ----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297          78 ----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGF  134 (185)
Q Consensus        78 ----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~  134 (185)
                                            .++..+++.++++..++.+.++|||||.|+++.|++ ..|++++||||||.+|.--+.
T Consensus        92 lsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~  171 (213)
T COG4136          92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRD  171 (213)
T ss_pred             cccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHH
Confidence                                  266788999999999999999999999999999999 999999999997766655555


Q ss_pred             HHHHHHHHHHHhcCCCeEEEecCh-hHHH
Q psy5297         135 GMACSIARELASNRQPFTLFATHF-HEIA  162 (185)
Q Consensus       135 ~~~~~il~~l~~~~~~~vii~tH~-~~~~  162 (185)
                      ..++.+...++. .|..++.+||| .++.
T Consensus       172 qfR~wVFs~~r~-agiPtv~VTHD~~Dvp  199 (213)
T COG4136         172 QFRQWVFSEVRA-AGIPTVQVTHDLQDVP  199 (213)
T ss_pred             HHHHHHHHHHHh-cCCCeEEEecccccCC
Confidence            555556677766 69999999999 5544

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=2.6e-28  Score=185.45  Aligned_cols=179  Identities=17%  Similarity=0.108  Sum_probs=136.2

Q ss_pred             ceEEEcccCCceeeecC----CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH------------
Q psy5297           4 GTLVLNQCRHPIVELQG----GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS------------   59 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~----~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i------------   59 (185)
                      +.++++|+...|....+    ....+++.|||++++|+.++++|.||||||||.|+|        |.|            
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence            35677777766643222    123489999999999999999999999999999999        333            


Q ss_pred             HHHHhhCceecCCCCC-c-c-------------------------hhhHHHhhcCc-ccccccCcCccHHHHHHHHHHHH
Q psy5297          60 VFLAQIGCFVPCDSAT-I-S-------------------------VVDQIFTRVGA-ADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        60 ~~~~~~g~~v~~~~~~-~-~-------------------------~~~~~l~~~~l-~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                      .++++...++||++.. + +                         .+.+-+..+|+ .+..+-++..||.|||||+++||
T Consensus        83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR  162 (267)
T COG4167          83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR  162 (267)
T ss_pred             HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence            2344444488888721 1 1                         12234556676 46678889999999999999999


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      |+ .+|+++|.||.   ++.+|.....+.+  ...+.++.|.+.|+++.+ --+..++|.+++|+.|++++.|++.++
T Consensus       163 ALIL~P~iIIaDeA---l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v  237 (267)
T COG4167         163 ALILRPKIIIADEA---LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV  237 (267)
T ss_pred             HHhcCCcEEEehhh---hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhh
Confidence            99 99999999999   6666644443432  345556579999999987 778889999999999999999988664

>TIGR01069 mutS2 MutS2 family protein

Probab=99.95  E-value=1.6e-27  Score=217.16  Aligned_cols=170  Identities=31%  Similarity=0.503  Sum_probs=144.0

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-CCcchhhHH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQI   82 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-~~~~~~~~~   82 (185)
                      +.+.+++++||++..   .+++.+|+++.- ..++++|+||||+|||||||+||.+.+.++.|+++|+.. ..++.++.+
T Consensus       294 ~~i~l~~~rhPll~~---~~~vp~di~l~~-~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i  369 (771)
T TIGR01069       294 GKIILENARHPLLKE---PKVVPFTLNLKF-EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI  369 (771)
T ss_pred             CCEEEccccCceecC---CceEeceeEeCC-CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe
Confidence            368999999999862   247888888752 238999999999999999999999888999999999987 567888888


Q ss_pred             HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297          83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA  162 (185)
Q Consensus        83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~  162 (185)
                      +..++..+.....+++||+||++++.+++.+.+|+++|+|||++|||+.++..+...+++.+.+ .++++|++||+.++.
T Consensus       370 ~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~  448 (771)
T TIGR01069       370 FADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELK  448 (771)
T ss_pred             eeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence            8888877788899999999999999999988899999999999999999999997777788876 699999999997777


Q ss_pred             HhhccccceeeeeEEE
Q psy5297         163 LLSRVIPTFRNVHESK  178 (185)
Q Consensus       163 ~~~d~~~~l~~g~i~~  178 (185)
                      .++...--+.+..+.+
T Consensus       449 ~~~~~~~~v~~~~~~~  464 (771)
T TIGR01069       449 ALMYNNEGVENASVLF  464 (771)
T ss_pred             HHhcCCCCeEEeEEEE
Confidence            7665544555555543

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0062|consensus

Probab=99.95  E-value=1.6e-28  Score=209.57  Aligned_cols=152  Identities=17%  Similarity=0.161  Sum_probs=118.7

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH--HHHH---Hh-hCceec-----------------CCCC---
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV--SVFL---AQ-IGCFVP-----------------CDSA---   74 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~--i~~~---~~-~g~~v~-----------------~~~~---   74 (185)
                      +.+.+|++-++++..|..|||+|+||+|||||||+|+.  +..+   .. .|.+++                 ++..   
T Consensus        91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~  170 (582)
T KOG0062|consen   91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA  170 (582)
T ss_pred             cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence            55778999999999999999999999999999999954  2110   00 011221                 1110   


Q ss_pred             C--c-chhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297          75 T--I-SVVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ  149 (185)
Q Consensus        75 ~--~-~~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~  149 (185)
                      .  . ..++++|..+|+++ ...++.++||||+|.|+++|||+ .+|+|||||||   |+.+|..++.|+- .+|.. ..
T Consensus       171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP---TNhLDv~av~WLe-~yL~t-~~  245 (582)
T KOG0062|consen  171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP---TNHLDVVAVAWLE-NYLQT-WK  245 (582)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC---cccchhHHHHHHH-HHHhh-CC
Confidence            0  0 11333677788764 46788899999999999999999 99999999999   9999999998854 67765 67


Q ss_pred             CeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297         150 PFTLFATHF-HEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       150 ~~vii~tH~-~~~~~~~d~~~~l~~g~i~  177 (185)
                      .|+|+|||| .++..+|+.|+..++-++.
T Consensus       246 ~T~liVSHDr~FLn~V~tdIIH~~~~kL~  274 (582)
T KOG0062|consen  246 ITSLIVSHDRNFLNTVCTDIIHLENLKLD  274 (582)
T ss_pred             ceEEEEeccHHHHHHHHHHHHHHhhhhhh
Confidence            899999999 8889999999999887663

>KOG0056|consensus

Probab=99.95  E-value=1.7e-28  Score=208.83  Aligned_cols=161  Identities=17%  Similarity=0.187  Sum_probs=122.3

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc--
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS--   77 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~--   77 (185)
                      .++++++||||++.+|+.++|+||+|+||||+||++        |.|             .++.++| .|||+...+.  
T Consensus       549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNdT  627 (790)
T KOG0056|consen  549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFNDT  627 (790)
T ss_pred             CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeecce
Confidence            357899999999999999999999999999999999        433             2356778 9999873322  


Q ss_pred             h---------------hhHHHhh-------cCcccccc----cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297          78 V---------------VDQIFTR-------VGAADSQY----RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST  130 (185)
Q Consensus        78 ~---------------~~~~l~~-------~~l~~~~~----~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~  130 (185)
                      .               +.+..+.       +++.+--+    ++--.||||+|||++|||++ ..|.+++|||.||.+|.
T Consensus       628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT  707 (790)
T KOG0056|consen  628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT  707 (790)
T ss_pred             eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence            1               1111111       22222222    33346999999999999999 99999999999887777


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      -...++...+ .++..  +.|.|++.|...-.--||.++++++|+|++.|..+++
T Consensus       708 ~tER~IQaaL-~rlca--~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeL  759 (790)
T KOG0056|consen  708 NTERAIQAAL-ARLCA--NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEEL  759 (790)
T ss_pred             ccHHHHHHHH-HHHhc--CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHH
Confidence            7666665554 67765  6788889997555556899999999999999987753

>KOG0054|consensus

Probab=99.95  E-value=6e-28  Score=226.94  Aligned_cols=175  Identities=13%  Similarity=0.119  Sum_probs=133.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI   76 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~   76 (185)
                      .+++++....|-.  ++..+.|+||||++++|+.++|+||-|||||+||.+|        |.+.+.+.+. |+||.+..+
T Consensus       518 ~i~i~~~sfsW~~--~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsia-Yv~Q~pWI~  594 (1381)
T KOG0054|consen  518 AIEIKNGSFSWDS--ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVA-YVPQQPWIQ  594 (1381)
T ss_pred             eEEEeeeeEecCC--CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEE-EeccccHhh
Confidence            3555555544433  1234599999999999999999999999999999999        4444455555 999998433


Q ss_pred             c----------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297          77 S----------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT  128 (185)
Q Consensus        77 ~----------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~  128 (185)
                      +                +++++++...+..+           ..++--+||||||||+++|||+ ++.+++|||.|++.+
T Consensus       595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV  674 (1381)
T KOG0054|consen  595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV  674 (1381)
T ss_pred             CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence            3                34555554444322           3455668999999999999999 999999999996666


Q ss_pred             CcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         129 STFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |..-...+.+..+..+.  +++|+|++||..+....||.+++|++|+|...|+.+|
T Consensus       675 Dahvg~~if~~ci~~~L--~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~e  728 (1381)
T KOG0054|consen  675 DAHVGKHIFEECIRGLL--RGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEE  728 (1381)
T ss_pred             hHhhhHHHHHHHHHhhh--cCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHH
Confidence            65555555544444444  3799999999988889999999999999999998765

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.94  E-value=2.1e-27  Score=187.31  Aligned_cols=160  Identities=14%  Similarity=0.102  Sum_probs=110.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeC-CceeEEEEccCCCcHHHHHHHHH-----H----HH---HHH--------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSG-EVSFNLVTGPNMGGKSTYIRSIG-----V----SV---FLA--------   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~-~g~~~~l~G~NGsGKSTLlk~iG-----~----i~---~~~--------   63 (185)
                      .++++|.+ .|-.        -++++|+.. +|++++|+||||||||||+++|-     .    ..   ...        
T Consensus         5 ~i~l~nf~-~y~~--------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~   75 (213)
T cd03279           5 KLELKNFG-PFRE--------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDT   75 (213)
T ss_pred             EEEEECCc-CcCC--------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCcc
Confidence            45666665 3322        266777654 48899999999999999999991     1    11   111        


Q ss_pred             -hhCceecCCCCC---------cch--hhH--HHhhcCcccccccCcCccHHHHHHHHHHHHhC-C----------CCeE
Q psy5297          64 -QIGCFVPCDSAT---------ISV--VDQ--IFTRVGAADSQYRGISTFMMEMKETATVIKKC-T----------ENSL  118 (185)
Q Consensus        64 -~~g~~v~~~~~~---------~~~--~~~--~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~----------~p~l  118 (185)
                       .++ +++|....         ++.  +.+  .+...++.+..++++.+||+||+||+++|+++ .          +|++
T Consensus        76 ~~v~-~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~  154 (213)
T cd03279          76 AEVS-FTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEA  154 (213)
T ss_pred             EEEE-EEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE
Confidence             122 44444321         111  111  12333456677899999999999999999998 4          5689


Q ss_pred             EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      +|||||++++|+.....+.+.+ +.+++ .+.|+|++||+ ..+..+||+++++++|-+
T Consensus       155 lllDEp~~~lD~~~~~~~~~~l-~~~~~-~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         155 LFIDEGFGTLDPEALEAVATAL-ELIRT-ENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             EEEeCCcccCCHHHHHHHHHHH-HHHHh-CCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence            9999997776666555554433 66665 48899999999 777889999999998754

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=3.2e-27  Score=186.26  Aligned_cols=143  Identities=15%  Similarity=0.106  Sum_probs=102.9

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH------HHH-HhhCceecCCCCCcc-----------------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS------VFL-AQIGCFVPCDSATIS-----------------   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i------~~~-~~~g~~v~~~~~~~~-----------------   77 (185)
                      ...+++++++     ++++|+|||||||||++++|-.+      ... .+++ ++++.....+                 
T Consensus        16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (212)
T cd03274          16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSCSVEVHFQEIIDK   89 (212)
T ss_pred             CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceEEEEEEEEeCCCH
Confidence            3568888877     79999999999999999999321      111 2344 4444321100                 


Q ss_pred             -------------h----hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhH
Q psy5297          78 -------------V----VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFG  135 (185)
Q Consensus        78 -------------~----~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~  135 (185)
                                   .    ..++.+.+++.+..++++..||+|||||+++|+++ .    .|+++++|||++|+|+.....
T Consensus        90 ~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~  169 (212)
T cd03274          90 PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSI  169 (212)
T ss_pred             HHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHH
Confidence                         0    12333556666667888999999999999999987 4    379999999977776666555


Q ss_pred             HHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceee
Q psy5297         136 MACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN  173 (185)
Q Consensus       136 ~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~  173 (185)
                      +.+.+ +.+++  +.++|++||+.++.++||++++|..
T Consensus       170 l~~~l-~~~~~--~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         170 VANYI-KERTK--NAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             HHHHH-HHHcC--CCEEEEEECcHHHHHhCCEEEEEEe
Confidence            54433 55543  6788999999888999999999875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.94  E-value=2.7e-26  Score=173.79  Aligned_cols=129  Identities=35%  Similarity=0.478  Sum_probs=102.0

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh----------hCceecCCCCCcchhhHHHhhcCccccccc
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ----------IGCFVPCDSATISVVDQIFTRVGAADSQYR   94 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~----------~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~   94 (185)
                      +.+++.+.  ++.+++|+|||||||||++|+++.+...++          .|.++|+....+     ++.          
T Consensus        12 ~~~~i~~~--~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----i~~----------   74 (162)
T cd03227          12 VPNDVTFG--EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----IFT----------   74 (162)
T ss_pred             eccEEecC--CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----ehh----------
Confidence            55666664  557999999999999999999988877766          555565554332     111          


Q ss_pred             CcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297          95 GISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP  169 (185)
Q Consensus        95 ~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~  169 (185)
                       ..++|+||+|++.+++++ .    +|+++|+|||++|+|+.+...+.+.+.+.. ++ +.++|++||+.++...+|+++
T Consensus        75 -~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~-~~-~~~vii~TH~~~~~~~~d~~~  151 (162)
T cd03227          75 -RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL-VK-GAQVIVITHLPELAELADKLI  151 (162)
T ss_pred             -eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hc-CCEEEEEcCCHHHHHhhhhEE
Confidence             123999999999999998 5    789999999999999999888888764444 43 889999999977778899998


Q ss_pred             ceee
Q psy5297         170 TFRN  173 (185)
Q Consensus       170 ~l~~  173 (185)
                      .|..
T Consensus       152 ~l~~  155 (162)
T cd03227         152 HIKK  155 (162)
T ss_pred             EEEE
Confidence            8865

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.94  E-value=1.5e-26  Score=169.72  Aligned_cols=100  Identities=23%  Similarity=0.403  Sum_probs=81.0

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCC---Ccc----
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSA---TIS----   77 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~---~~~----   77 (185)
                      |+|+||++++|++++|+||||||||||+++|        |.|             .....++ |+||+..   ..+    
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIG-YVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEE-EEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            6899999999999999999999999999999        222             2234455 9999852   222    


Q ss_pred             ----hhhHHHhhcCcccccccCc----CccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297          78 ----VVDQIFTRVGAADSQYRGI----STFMMEMKETATVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus        78 ----~~~~~l~~~~l~~~~~~~~----~~lS~g~~q~~~ia~~l-~~p~llllDEP~~  126 (185)
                          .++.+++.+++.+..++.+    .+||+|||||++||+++ .+|+++||||||+
T Consensus        80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                3556777788766555555    99999999999999999 9999999999953

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.94  E-value=1.2e-27  Score=180.65  Aligned_cols=161  Identities=12%  Similarity=0.089  Sum_probs=122.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH------------HHhhCceecCCC---CCcc---
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF------------LAQIGCFVPCDS---ATIS---   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~------------~~~~g~~v~~~~---~~~~---   77 (185)
                      ..-+-.+|.++..|+++-++|||||||||||-.+       |.|.+            +++--+|..|..   +.++   
T Consensus        12 ~tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~   91 (248)
T COG4138          12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH   91 (248)
T ss_pred             cccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence            3457889999999999999999999999999998       33322            111112444432   1112   


Q ss_pred             -------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC--------CCCeEEEEeCCCCCCCcCChhHH
Q psy5297          78 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC--------TENSLVIIDELGRGTSTFDGFGM  136 (185)
Q Consensus        78 -------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l--------~~p~llllDEP~~g~~~~d~~~~  136 (185)
                                   .++.+...+++++.+.+..++||||+-||+-+|..+        -..+++|+|||.+++|.-....+
T Consensus        92 YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL  171 (248)
T COG4138          92 YLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL  171 (248)
T ss_pred             hhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence                         356677888999999999999999999999998763        24569999999444444332222


Q ss_pred             HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                       ..++.++.+ .|.+|||++|| +.-.+-+|+++.++.|++...|..+++
T Consensus       172 -drll~~~c~-~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eV  219 (248)
T COG4138         172 -DRLLSALCQ-QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEV  219 (248)
T ss_pred             -HHHHHHHHh-CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhh
Confidence             334577776 79999999999 899999999999999999999987764

>KOG0927|consensus

Probab=99.94  E-value=1.2e-26  Score=199.05  Aligned_cols=157  Identities=18%  Similarity=0.157  Sum_probs=114.8

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH--H--------HHHH-----------hhC--------------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV--S--------VFLA-----------QIG--------------   66 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~--i--------~~~~-----------~~g--------------   66 (185)
                      +.+++.|+.|++.+|+.+||+|||||||||+|++|+.  +        ....           +.+              
T Consensus        87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~  166 (614)
T KOG0927|consen   87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYL  166 (614)
T ss_pred             CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHH
Confidence            4679999999999999999999999999999999921  1        0000           000              


Q ss_pred             --ceecC-CC---CCcc----------------hhhHHHhhcCc-ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEe
Q psy5297          67 --CFVPC-DS---ATIS----------------VVDQIFTRVGA-ADSQYRGISTFMMEMKETATVIKKC-TENSLVIID  122 (185)
Q Consensus        67 --~~v~~-~~---~~~~----------------~~~~~l~~~~l-~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllD  122 (185)
                        -|..+ +.   ..+.                .+.+++..++. .+..++.+.+||+|+++|+++||+| .+|+++|||
T Consensus       167 ~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLD  246 (614)
T KOG0927|consen  167 AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLD  246 (614)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEec
Confidence              00000 00   0000                12233333333 4567889999999999999999999 999999999


Q ss_pred             CCCCCCCcCChhHHHHHHHHHHHhcCCC-eEEEecCh-hHHHHhhccccceeeee-EEEEeccC
Q psy5297         123 ELGRGTSTFDGFGMACSIARELASNRQP-FTLFATHF-HEIALLSRVIPTFRNVH-ESKYLYHT  183 (185)
Q Consensus       123 EP~~g~~~~d~~~~~~~il~~l~~~~~~-~vii~tH~-~~~~~~~d~~~~l~~g~-i~~~~~~~  183 (185)
                      ||   |+++|.+++.|+- +.|++ ... ++++++|+ ..+..+|+.|+.+++++ +.+.|+.+
T Consensus       247 EP---tnhLDleA~~wLe-e~L~k-~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd  305 (614)
T KOG0927|consen  247 EP---TNHLDLEAIVWLE-EYLAK-YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD  305 (614)
T ss_pred             CC---ccCCCHHHHHHHH-HHHHh-ccCceEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence            99   8888888888743 66665 444 89999998 78889999999999999 45555543

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.93  E-value=2.9e-25  Score=204.84  Aligned_cols=102  Identities=14%  Similarity=0.037  Sum_probs=84.6

Q ss_pred             HHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-C---CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297          82 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-T---ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT  156 (185)
Q Consensus        82 ~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~---~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t  156 (185)
                      +++.+++.. .+++++.+||+||+||+.||+++ .   +|+++|||||++|+++.+...+.+.+ ..+.+ .|.|||++|
T Consensus       811 ~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L-~~l~~-~G~TVIvi~  888 (924)
T TIGR00630       811 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVL-QRLVD-QGNTVVVIE  888 (924)
T ss_pred             HHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEe
Confidence            345667765 46889999999999999999999 5   58999999998888888777776654 66665 589999999


Q ss_pred             ChhHHHHhhccccce------eeeeEEEEeccCCC
Q psy5297         157 HFHEIALLSRVIPTF------RNVHESKYLYHTNV  185 (185)
Q Consensus       157 H~~~~~~~~d~~~~l------~~g~i~~~~~~~~~  185 (185)
                      |+.+....||+++.|      ++|++++.|+++++
T Consensus       889 H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       889 HNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            995555689999999      79999999988764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0054|consensus

Probab=99.93  E-value=1.3e-25  Score=211.21  Aligned_cols=175  Identities=12%  Similarity=0.145  Sum_probs=131.4

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HH
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VF   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~   61 (185)
                      ++.++++|..-   +++.+...||+||||+|++||.+||+|+.|||||||+.++        |.|             .+
T Consensus      1136 ~G~I~f~~~~~---RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1136 KGEIEFEDLSL---RYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred             CCeEEEEEeEE---EeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH
Confidence            44566666653   3344456799999999999999999999999999999999        443             34


Q ss_pred             HHhhCceecCCCCCcc--------h--------hhHHHhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 LAQIGCFVPCDSATIS--------V--------VDQIFTRVG-----------AADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~~--------~--------~~~~l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      +.+++ .+||+|..++        +        +=++++..+           ++....+.-.+||.||||.+++|||+ 
T Consensus      1213 Rsrls-IIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1213 RSRLS-IIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred             HhcCe-eeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh
Confidence            56666 9999984433        1        112333333           33344455678999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .++++++|||.|++.|+..-.-+++.+.++.+   ++|||.+-|...-.--|||+++|++|++++.++|.+
T Consensus      1292 r~skILvLDEATAsVD~~TD~lIQ~tIR~~F~---dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1292 RKSKILVLDEATASVDPETDALIQKTIREEFK---DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred             ccCCEEEEecccccCChHHHHHHHHHHHHHhc---CCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHH
Confidence            99999999999777777653334443434333   699999999855555589999999999999998864

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.93  E-value=4.1e-25  Score=204.18  Aligned_cols=101  Identities=13%  Similarity=0.037  Sum_probs=84.1

Q ss_pred             HHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCC---eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297          82 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TEN---SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT  156 (185)
Q Consensus        82 ~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p---~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t  156 (185)
                      .++.+++.. .+++++.+||+||+||+.||+++ .+|   +++|||||++|+++.+...+.+.+ ..+.+ .|.|||++|
T Consensus       813 ~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L-~~l~~-~G~TVIiit  890 (943)
T PRK00349        813 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVL-HRLVD-KGNTVVVIE  890 (943)
T ss_pred             HHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEe
Confidence            345567765 47889999999999999999999 888   999999998888888777666654 66665 589999999


Q ss_pred             ChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         157 HFHEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       157 H~~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      |+.+....||+++.|      ++|++++.|++++
T Consensus       891 H~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e  924 (943)
T PRK00349        891 HNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEE  924 (943)
T ss_pred             cCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence            995555689999999      7999999988754

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.92  E-value=2.6e-25  Score=178.07  Aligned_cols=79  Identities=11%  Similarity=0.063  Sum_probs=61.3

Q ss_pred             cccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297          92 QYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR  166 (185)
Q Consensus        92 ~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d  166 (185)
                      .++++.+||+||+||++||+++ .    +|+++|+|||++|+|+.....+.+.+ ..+.+  +.++|++||..++.++||
T Consensus       152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~--~~~ii~~~h~~~~~~~~d  228 (243)
T cd03272         152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSD--GAQFITTTFRPELLEVAD  228 (243)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC--CCEEEEEecCHHHHhhCC
Confidence            3578899999999999999998 3    58999999996666655544444433 44433  778888999888889999


Q ss_pred             cccceee
Q psy5297         167 VIPTFRN  173 (185)
Q Consensus       167 ~~~~l~~  173 (185)
                      ++++|.-
T Consensus       229 ~i~~l~~  235 (243)
T cd03272         229 KFYGVKF  235 (243)
T ss_pred             EEEEEEE
Confidence            9998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927|consensus

Probab=99.92  E-value=1.5e-25  Score=192.45  Aligned_cols=161  Identities=19%  Similarity=0.224  Sum_probs=121.7

Q ss_pred             CCceeeecC------CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHh--hC---------
Q psy5297          12 RHPIVELQG------GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQ--IG---------   66 (185)
Q Consensus        12 ~~~~l~~~~------~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~--~g---------   66 (185)
                      .+|++.+.+      ++-.++++++|.++.++.++++||||+|||||||++        |.+.-..+  ++         
T Consensus       386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~  465 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQ  465 (614)
T ss_pred             CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhh
Confidence            445555544      122589999999999999999999999999999999        33211000  00         


Q ss_pred             ---------ceecCCC--CCcchhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          67 ---------CFVPCDS--ATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        67 ---------~~v~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                               .++|.-+  .....+..++.++|+. +....++++||.|||.|+.+|+++ ..|.+|+||||   |+++|.
T Consensus       466 ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP---tnhLDi  542 (614)
T KOG0927|consen  466 LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP---TNHLDI  542 (614)
T ss_pred             cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC---CcCCCc
Confidence                     0111111  2233467788999998 667899999999999999999999 99999999999   666666


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297         134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~  177 (185)
                      ..+.. +-+.+++ ...+||++||| ..+.++++++++..+|.+.
T Consensus       543 ~tid~-laeaiNe-~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~  585 (614)
T KOG0927|consen  543 ETIDA-LAEAINE-FPGGVVLVSHDFRLISQVAEEIWVCENGTVT  585 (614)
T ss_pred             hhHHH-HHHHHhc-cCCceeeeechhhHHHHHHHHhHhhccCcee
Confidence            65544 3366665 67789999999 8889999999999998864

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=7.6e-26  Score=189.64  Aligned_cols=160  Identities=19%  Similarity=0.200  Sum_probs=119.8

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCcc--
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATIS--   77 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~~--   77 (185)
                      ..+++++++||+++.|+.++++||+|+||||++|++        |.|.+             +.-+| .+||+...+.  
T Consensus       274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg-~VPQDtvLFNDt  352 (497)
T COG5265         274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG-IVPQDTVLFNDT  352 (497)
T ss_pred             ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC-cCcccceehhhh
Confidence            457899999999999999999999999999999999        44422             34456 9999874332  


Q ss_pred             h---------------hhHHHhhcCc-------ccccccCc----CccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297          78 V---------------VDQIFTRVGA-------ADSQYRGI----STFMMEMKETATVIKKC-TENSLVIIDELGRGTST  130 (185)
Q Consensus        78 ~---------------~~~~l~~~~l-------~~~~~~~~----~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~  130 (185)
                      .               +....+.+.+       .+-.+..+    -.+|||+|||++|||++ .+|++++|||.||.+|.
T Consensus       353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt  432 (497)
T COG5265         353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT  432 (497)
T ss_pred             HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence            1               1111222222       12223333    35999999999999999 99999999999777666


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ....++...+ +.+.  .|.|.+++-|...-.--||+++++++|+|++.|+.++
T Consensus       433 ~te~~iq~~l-~~~~--~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~  483 (497)
T COG5265         433 HTEQAIQAAL-REVS--AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEE  483 (497)
T ss_pred             hHHHHHHHHH-HHHh--CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHH
Confidence            6655555544 5555  3889999999866566699999999999999998764

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.92  E-value=2.8e-25  Score=174.22  Aligned_cols=140  Identities=15%  Similarity=0.081  Sum_probs=94.5

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHH-----HHHHH-------H----------HhhCceecCCCC--Cc------chhh
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSI-----GVSVF-------L----------AQIGCFVPCDSA--TI------SVVD   80 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~i-----G~i~~-------~----------~~~g~~v~~~~~--~~------~~~~   80 (185)
                      +++.+| +++|+||||||||||+++|     |....       .          +.++ ++++.+.  .+      ++++
T Consensus        18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~-~~f~~~~~~~~~v~r~~~~~~   95 (204)
T cd03240          18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVK-LAFENANGKKYTITRSLAILE   95 (204)
T ss_pred             EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEE-EEEEeCCCCEEEEEEEhhHhh
Confidence            444566 9999999999999999999     21110       0          1122 4555431  11      2223


Q ss_pred             HHHh--hcCcccccccCcCccHHHHHHH------HHHHHhC-CCCeEEEEeCCCCCCCcCChh-HHHHHHHHHHHhcCCC
Q psy5297          81 QIFT--RVGAADSQYRGISTFMMEMKET------ATVIKKC-TENSLVIIDELGRGTSTFDGF-GMACSIARELASNRQP  150 (185)
Q Consensus        81 ~~l~--~~~l~~~~~~~~~~lS~g~~q~------~~ia~~l-~~p~llllDEP~~g~~~~d~~-~~~~~il~~l~~~~~~  150 (185)
                      ++..  .-...+..++++++||+||+||      +++|+++ .+|+++++|||++++|+.... .+.+.+ ..++++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l-~~~~~~~~~  174 (204)
T cd03240          96 NVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEII-EERKSQKNF  174 (204)
T ss_pred             ceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHH-HHHHhccCC
Confidence            2210  0111234477899999999996      6788999 999999999997776665555 444433 566552378


Q ss_pred             eEEEecChhHHHHhhccccceee
Q psy5297         151 FTLFATHFHEIALLSRVIPTFRN  173 (185)
Q Consensus       151 ~vii~tH~~~~~~~~d~~~~l~~  173 (185)
                      ++|++||+.+....||+++.|.+
T Consensus       175 ~iiiitH~~~~~~~~d~i~~l~~  197 (204)
T cd03240         175 QLIVITHDEELVDAADHIYRVEK  197 (204)
T ss_pred             EEEEEEecHHHHhhCCEEEEEee
Confidence            99999999666678999998865

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.92  E-value=8.6e-25  Score=188.75  Aligned_cols=168  Identities=22%  Similarity=0.237  Sum_probs=131.3

Q ss_pred             ceeeecC-CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceec
Q psy5297          14 PIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVP   70 (185)
Q Consensus        14 ~~l~~~~-~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~   70 (185)
                      |.+++++ +....+.|+||++.+|||++|.|-=|||+|-|+++|        |.|.+              ...++ |+|
T Consensus       262 ~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~-~v~  340 (500)
T COG1129         262 PVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA-YVP  340 (500)
T ss_pred             cEEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE-eCC
Confidence            4555554 222258999999999999999999999999999999        33322              12234 888


Q ss_pred             CCCC------Ccch--------------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          71 CDSA------TISV--------------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        71 ~~~~------~~~~--------------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      .+..      ..++                          ++.+.+.+++. ...+.++++||||.|||+.|||.+ .+|
T Consensus       341 EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p  420 (500)
T COG1129         341 EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDP  420 (500)
T ss_pred             cccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCC
Confidence            7652      1111                          22233334432 345688999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++|||||||+|.|.-...++.+.+ +.+++ .|.+||++|-+ +|+..+|||+++|++|+++.+.+.++
T Consensus       421 ~vLilDEPTRGIDVGAK~eIy~li-~~lA~-~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~  487 (500)
T COG1129         421 KVLILDEPTRGIDVGAKAEIYRLI-RELAA-EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE  487 (500)
T ss_pred             CEEEECCCCcCcccchHHHHHHHH-HHHHH-CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence            999999999999998888887755 88887 69999999998 99999999999999999998876653

>KOG0219|consensus

Probab=99.92  E-value=1.6e-25  Score=198.07  Aligned_cols=180  Identities=57%  Similarity=0.964  Sum_probs=168.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT   84 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~   84 (185)
                      ++.+++.+||.++.++...++.||++|+..++++..++|||+.||||.+|..|.+.+++|+|+|||++...+++++.++.
T Consensus       614 rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~  693 (902)
T KOG0219|consen  614 RLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILT  693 (902)
T ss_pred             HHHHHhcccchhhccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHh
Confidence            56788999999998887789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297          85 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus        85 ~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      +.|.++..-+..++|+.+|-.-..|+|.+...++++.|||.+||+..|+-.+.|.+-+++..+.++-.|++||.+++..+
T Consensus       694 RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~l  773 (902)
T KOG0219|consen  694 RVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKL  773 (902)
T ss_pred             hhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999888876568889999999999999


Q ss_pred             hccccceeeeeEEEEeccCC
Q psy5297         165 SRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       165 ~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.....+++-++.+....++
T Consensus       774 ae~~~~vKn~h~~a~i~~~~  793 (902)
T KOG0219|consen  774 AEQLPTVKNLHVTAQIENDD  793 (902)
T ss_pred             hhhhhhhhhheeeeEecCcc
Confidence            99998888888877766554

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.91  E-value=1.8e-24  Score=168.92  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=98.9

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-------HH-------hhC------ceecCCCCC----c-----
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------LA-------QIG------CFVPCDSAT----I-----   76 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-------~~-------~~g------~~v~~~~~~----~-----   76 (185)
                      +.++++++.+| +.+|+||||||||||+.+|.....       +.       +.+      .+.++....    .     
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~   90 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQ   90 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHH
Confidence            36677777775 889999999999999999932100       00       001      122332110    1     


Q ss_pred             chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc--CC
Q psy5297          77 SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASN--RQ  149 (185)
Q Consensus        77 ~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~--~~  149 (185)
                      ..++++++.   .+..++++.+||+|||||++||+++     .+|+++|||||++|+|......+.+.+ ..+.++  .+
T Consensus        91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l-~~~~~~~~~~  166 (198)
T cd03276          91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLL-VKEAKKQPGR  166 (198)
T ss_pred             HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHH-HHHHhcCCCc
Confidence            123444444   5667889999999999999999876     699999999997777776666565544 444332  23


Q ss_pred             CeEEEecCh-hHHHHhhccccceeeee
Q psy5297         150 PFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       150 ~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      .+|+++||+ .++..+ |++.+++.++
T Consensus       167 ~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         167 QFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             EEEEEECCcccccccc-cceeEEEecC
Confidence            589999999 666665 9999888653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.91  E-value=3.8e-24  Score=205.79  Aligned_cols=101  Identities=11%  Similarity=0.059  Sum_probs=84.3

Q ss_pred             HHhhcCcccc-cccCcCccHHHHHHHHHHHHhC-C---CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297          82 IFTRVGAADS-QYRGISTFMMEMKETATVIKKC-T---ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT  156 (185)
Q Consensus        82 ~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~---~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t  156 (185)
                      +++.+++.+. .++++.+||+||+||++||+++ .   +|+++||||||+|+|+.+...+.+.+ ..+++ .|.|||++|
T Consensus       792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL-~~L~~-~G~TVIiIs  869 (1809)
T PRK00635        792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVL-QSLTH-QGHTVVIIE  869 (1809)
T ss_pred             HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHh-cCCEEEEEe
Confidence            4566788775 7899999999999999999999 3   89999999998888777766666654 66766 599999999


Q ss_pred             ChhHHHHhhcccccee------eeeEEEEeccCC
Q psy5297         157 HFHEIALLSRVIPTFR------NVHESKYLYHTN  184 (185)
Q Consensus       157 H~~~~~~~~d~~~~l~------~g~i~~~~~~~~  184 (185)
                      |+.+..+.||++++|.      +|++++.+++++
T Consensus       870 Hdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee  903 (1809)
T PRK00635        870 HNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE  903 (1809)
T ss_pred             CCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence            9944448999999996      789999988764

>KOG0220|consensus

Probab=99.91  E-value=3.5e-24  Score=187.54  Aligned_cols=174  Identities=40%  Similarity=0.666  Sum_probs=160.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR   85 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~   85 (185)
                      +-|++.+||+|+-...++++-+|..++ +.-.+..|+|||+|||||.||.+..+.+++|+|+|||+....+++++.++.+
T Consensus       592 laI~qGRHPILe~i~~ek~i~N~t~~t-~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtR  670 (867)
T KOG0220|consen  592 LAIKQGRHPILEKISAEKPIANNTYVT-EGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTR  670 (867)
T ss_pred             eeeccCCCchhhhhcccCcccCcceee-cccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHH
Confidence            779999999999777667777888877 5568999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      +|-.|.+.+.-++|-.+|+...+|..-..+.+|++|||..+||+..|+.++.+.+.+++.+ ...+++++||..++++++
T Consensus       671 mg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~-LkayTflATHFldIa~la  749 (867)
T KOG0220|consen  671 MGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLS-LKAYTFLATHFLDIAAIA  749 (867)
T ss_pred             hcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHH-hhHhHHHHHHHHHHHHHh
Confidence            9998999999999999999999999999999999999999999999999999999999887 678889999999999999


Q ss_pred             ccccceeeeeEEEEec
Q psy5297         166 RVIPTFRNVHESKYLY  181 (185)
Q Consensus       166 d~~~~l~~g~i~~~~~  181 (185)
                      ..-.-+++-|...+.+
T Consensus       750 n~~paVdnlHF~~q~~  765 (867)
T KOG0220|consen  750 NYYPAVDNLHFLVQTD  765 (867)
T ss_pred             hcCccccceeeeeeec
Confidence            9999999988766554

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.90  E-value=5.4e-24  Score=171.68  Aligned_cols=80  Identities=8%  Similarity=-0.003  Sum_probs=61.6

Q ss_pred             cccccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297          90 DSQYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus        90 ~~~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      +..++++.+||+||+||+++|+++ .    +|+++|+|||++++|+.....+.+.+ ..+.  .|.++|++||+.++.+.
T Consensus       158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l-~~~~--~g~~ii~iSH~~~~~~~  234 (251)
T cd03273         158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMI-KTHF--KGSQFIVVSLKEGMFNN  234 (251)
T ss_pred             HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHc--CCCEEEEEECCHHHHHh
Confidence            345678999999999999999987 3    67999999996665555444444433 4443  37899999999888888


Q ss_pred             hcccccee
Q psy5297         165 SRVIPTFR  172 (185)
Q Consensus       165 ~d~~~~l~  172 (185)
                      ||+++-+.
T Consensus       235 ~d~v~~~~  242 (251)
T cd03273         235 ANVLFRTR  242 (251)
T ss_pred             CCEEEEEE
Confidence            99998665

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.90  E-value=1.1e-23  Score=169.59  Aligned_cols=78  Identities=14%  Similarity=0.068  Sum_probs=62.5

Q ss_pred             cCcCccHHHHHHHHHHHHhC-CC----CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccc
Q psy5297          94 RGISTFMMEMKETATVIKKC-TE----NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVI  168 (185)
Q Consensus        94 ~~~~~lS~g~~q~~~ia~~l-~~----p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~  168 (185)
                      +++.+||+||+||++||+++ .+    |+++|||||++|+|+.....+.+.+ ..+++ .|.++|++||+.++...||++
T Consensus       151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i-~~~~~-~g~~vi~isH~~~~~~~~d~i  228 (247)
T cd03275         151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYI-REQAG-PNFQFIVISLKEEFFSKADAL  228 (247)
T ss_pred             hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHH-HHhcc-CCcEEEEEECCHHHHhhCCeE
Confidence            34589999999999999998 54    8999999997777666655555544 55554 489999999997778899999


Q ss_pred             cceee
Q psy5297         169 PTFRN  173 (185)
Q Consensus       169 ~~l~~  173 (185)
                      ++|..
T Consensus       229 ~~~~~  233 (247)
T cd03275         229 VGVYR  233 (247)
T ss_pred             EEEEe
Confidence            88764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0065|consensus

Probab=99.89  E-value=4.1e-24  Score=198.36  Aligned_cols=161  Identities=15%  Similarity=0.123  Sum_probs=131.7

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH----------HHHH----------HHHhhCceecCCCCCcc---
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI----------GVSV----------FLAQIGCFVPCDSATIS---   77 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i----------G~i~----------~~~~~g~~v~~~~~~~~---   77 (185)
                      +.+.+|+||+=-+.+|-.++|+|++||||||||++|          |.|.          +.+..| ||-|.+...+   
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G-YvqQ~DiH~~~~T  880 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG-YVEQQDIHSPELT  880 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc-eeecccccCcccc
Confidence            557799999999999999999999999999999999          3332          233455 9999874333   


Q ss_pred             ------------------------hhhHHHhhcCcccccccCcCc----cHHHHHHHHHHHHhC-CCC-eEEEEeCCCCC
Q psy5297          78 ------------------------VVDQIFTRVGAADSQYRGIST----FMMEMKETATVIKKC-TEN-SLVIIDELGRG  127 (185)
Q Consensus        78 ------------------------~~~~~l~~~~l~~~~~~~~~~----lS~g~~q~~~ia~~l-~~p-~llllDEP~~g  127 (185)
                                              .++++++.+++++..+.-++.    ||.+||+|+.|+--| .+| .||+|||||+|
T Consensus       881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG  960 (1391)
T KOG0065|consen  881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG  960 (1391)
T ss_pred             hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence                                    367788889998888777776    999999999999999 999 99999999777


Q ss_pred             CCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceee-eeEEEEeccCC
Q psy5297         128 TSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRN-VHESKYLYHTN  184 (185)
Q Consensus       128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~-g~i~~~~~~~~  184 (185)
                      +|......+.+. ++.+++ .|.||+.+=|.  .++.+.-|+++.|++ |+.++.|+..+
T Consensus       961 LDsqaA~~i~~~-lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  961 LDSQAAAIVMRF-LRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             ccHHHHHHHHHH-HHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            766664444443 588887 79999999997  677888899999986 78999988653

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.88  E-value=3.4e-23  Score=172.87  Aligned_cols=168  Identities=15%  Similarity=0.128  Sum_probs=121.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH------------h
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA------------Q   64 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~------------~   64 (185)
                      .++++|.+..|..    +.+-++.||+++++||++-|+|.||||||||++.+        |.|.+.+            +
T Consensus       322 ~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~  397 (546)
T COG4615         322 TLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK  397 (546)
T ss_pred             ceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHH
Confidence            3556666655544    23778999999999999999999999999999999        5554311            1


Q ss_pred             hCceecCCC------------CCcchhhHHHhhcCcccc---cccC--cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297          65 IGCFVPCDS------------ATISVVDQIFTRVGAADS---QYRG--ISTFMMEMKETATVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus        65 ~g~~v~~~~------------~~~~~~~~~l~~~~l~~~---~~~~--~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~  126 (185)
                      ..+-|+.+.            .....++.+++++.+.+.   .+..  .-.||-|||+|+++.-++ -+.+++++||-  
T Consensus       398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW--  475 (546)
T COG4615         398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW--  475 (546)
T ss_pred             HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh--
Confidence            111222221            222246666766665432   2333  346899999999998888 99999999999  


Q ss_pred             CCCcCChhHHHHH---HHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEe
Q psy5297         127 GTSTFDGFGMACS---IARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYL  180 (185)
Q Consensus       127 g~~~~d~~~~~~~---il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~  180 (185)
                       -...|+...++.   ++-.+++ .|+||+.+|||+.-...|||.+.+++|++++..
T Consensus       476 -AADQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         476 -AADQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             -hccCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence             556665555443   3555665 799999999998888899999999999997654

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.88  E-value=6.4e-23  Score=173.65  Aligned_cols=147  Identities=17%  Similarity=0.158  Sum_probs=108.7

Q ss_pred             eeeceEEEeeC-----CceeEEEEccCCCcHHHHHHHH-HHHHHH------HhhCceecCCC-CCc--c-----------
Q psy5297          24 YIPNDVYFKSG-----EVSFNLVTGPNMGGKSTYIRSI-GVSVFL------AQIGCFVPCDS-ATI--S-----------   77 (185)
Q Consensus        24 ~il~~isl~i~-----~g~~~~l~G~NGsGKSTLlk~i-G~i~~~------~~~g~~v~~~~-~~~--~-----------   77 (185)
                      ..+.++.|+++     .||+++++||||-|||||.|+| |.+.-.      -.+ +|=||-- ..+  +           
T Consensus       350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~v-SyKPQyI~~~~~gtV~~~l~~~~~~  428 (591)
T COG1245         350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKV-SYKPQYISPDYDGTVEDLLRSAIRS  428 (591)
T ss_pred             eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceE-eecceeecCCCCCcHHHHHHHhhhh
Confidence            35667888764     5689999999999999999999 333211      112 2555532 001  1           


Q ss_pred             ------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC
Q psy5297          78 ------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP  150 (185)
Q Consensus        78 ------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~  150 (185)
                            ...++++.+.+++.+++++..||||+.||++||.+| .+.+++|||||.+-+|...+...... ++++.++.++
T Consensus       429 ~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv-IRR~~e~~~k  507 (591)
T COG1245         429 AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV-IRRFIENNEK  507 (591)
T ss_pred             hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH-HHHHHhhcCc
Confidence                  244567778889999999999999999999999999 99999999999444444333333333 4777776799


Q ss_pred             eEEEecCh-hHHHHhhcccccee
Q psy5297         151 FTLFATHF-HEIALLSRVIPTFR  172 (185)
Q Consensus       151 ~vii~tH~-~~~~~~~d~~~~l~  172 (185)
                      |.+++.|| ..+..++||++++.
T Consensus       508 ta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         508 TALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             eEEEEecceehhhhhhceEEEEe
Confidence            99999999 77777899998875

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.87  E-value=1.1e-22  Score=160.46  Aligned_cols=146  Identities=18%  Similarity=0.215  Sum_probs=94.3

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-------H----H---hhC-----------------------cee
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------L----A---QIG-----------------------CFV   69 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-------~----~---~~g-----------------------~~v   69 (185)
                      .++.+++.+ .+.+|+|||||||||||..|.....       +    .   +.|                       .++
T Consensus        15 ~~~~i~~~~-g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~   93 (213)
T cd03277          15 DETEFRPGP-SLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL   93 (213)
T ss_pred             ceeEEecCC-CeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence            456666654 5789999999999999999922211       0    0   000                       112


Q ss_pred             cCCC----CCcchhhHHHhhcCc-ccccccCcCccHHHHHHHHHHHHh----C-CCCeEEEEeCCCCCCCcCChhHHHHH
Q psy5297          70 PCDS----ATISVVDQIFTRVGA-ADSQYRGISTFMMEMKETATVIKK----C-TENSLVIIDELGRGTSTFDGFGMACS  139 (185)
Q Consensus        70 ~~~~----~~~~~~~~~l~~~~l-~~~~~~~~~~lS~g~~q~~~ia~~----l-~~p~llllDEP~~g~~~~d~~~~~~~  139 (185)
                      +|+.    ..+... +++..++- .+..+..+.+||+||||++.++++    + .+|+++|+|||++|+|+.....+.+.
T Consensus        94 ~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~  172 (213)
T cd03277          94 PQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDM  172 (213)
T ss_pred             chHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHH
Confidence            2221    111122 23333321 234567788999999999887643    3 79999999999888777776666554


Q ss_pred             HHHHHHhcCC-CeEEEecCh-hHHHHhhc--cccceeeee
Q psy5297         140 IARELASNRQ-PFTLFATHF-HEIALLSR--VIPTFRNVH  175 (185)
Q Consensus       140 il~~l~~~~~-~~vii~tH~-~~~~~~~d--~~~~l~~g~  175 (185)
                      + ..+.++.| .++|++||+ .+..+.||  +++++.+|+
T Consensus       173 l-~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         173 L-VETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             H-HHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            4 45554224 579999998 67777776  667777776

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG2355|consensus

Probab=99.87  E-value=1.7e-22  Score=156.21  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=114.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H-------HHHHHHhh----------C
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G-------VSVFLAQI----------G   66 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G-------~i~~~~~~----------g   66 (185)
                      .+++.+++..|-.    ..+++-|+|++++.|..+.++|.||||||||||++ |       .|.+.+..          |
T Consensus        13 aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg   88 (291)
T KOG2355|consen   13 AIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG   88 (291)
T ss_pred             eEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence            4566666655533    24799999999999999999999999999999999 2       12111000          0


Q ss_pred             --ceecCCC-------------CCcch--------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          67 --CFVPCDS-------------ATISV--------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        67 --~~v~~~~-------------~~~~~--------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                        +|+-.+-             ..++.              -+.++..++++  ..-+....|.|||+|+.|+.-+ ..-
T Consensus        89 dl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~Pf  166 (291)
T KOG2355|consen   89 DLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPF  166 (291)
T ss_pred             ceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccce
Confidence              0111100             01111              12222222222  2345668999999999999999 888


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHH---hcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELA---SNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~---~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      +++||||.   |-.+|..+...++ +.++   +++|+||+++||. .-++..+++++.+++|+++...+
T Consensus       167 kVLLLDEV---TVDLDVlARadLL-eFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~  231 (291)
T KOG2355|consen  167 KVLLLDEV---TVDLDVLARADLL-EFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK  231 (291)
T ss_pred             eEEEeeee---EeehHHHHHHHHH-HHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence            99999999   6556655554433 4443   3479999999997 88999999999999999987544

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.87  E-value=2.2e-22  Score=156.36  Aligned_cols=163  Identities=13%  Similarity=0.055  Sum_probs=128.4

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH-----------------HH-----------HHhhCceecCC
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS-----------------VF-----------LAQIGCFVPCD   72 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i-----------------~~-----------~~~~g~~v~~~   72 (185)
                      |.-.+++++|++++.||+.+|+|.+|||||-..|.|..+                 .+           .++-.+++||+
T Consensus        18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe   97 (330)
T COG4170          18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE   97 (330)
T ss_pred             CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence            445699999999999999999999999999999999222                 11           11222478887


Q ss_pred             CCCc--c------------------------------hhhHHHhhcCccc---ccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          73 SATI--S------------------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        73 ~~~~--~------------------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      +...  +                              ++-+++.++|+.+   ....++.+|..|+-|++.||.|+ .+|
T Consensus        98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqP  177 (330)
T COG4170          98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQP  177 (330)
T ss_pred             chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCC
Confidence            6211  1                              2445677778754   45688999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++|.|||++.+++.....+.++ +..+++..|.+|++++|| ..+.+.||++-+|.-|.-++....++
T Consensus       178 rLLIADEPTN~~e~~Tq~QifRL-Ls~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~  245 (330)
T COG4170         178 RLLIADEPTNSMEPTTQAQIFRL-LSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEE  245 (330)
T ss_pred             ceEeccCCCcccCccHHHHHHHH-HHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhH
Confidence            99999999777777776666554 477887779999999999 88999999999999998766665543

>KOG0218|consensus

Probab=99.87  E-value=5.6e-22  Score=174.05  Aligned_cols=172  Identities=41%  Similarity=0.704  Sum_probs=154.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT   84 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~   84 (185)
                      .+-+++.+||+++.-.+..+|+||+.++-+.+.+..|+|||+.|||.++|.++.+.+++|+|+|||++...+++++.++.
T Consensus       799 eI~ikngRhPvIe~Ll~d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~Ifdgvlt  878 (1070)
T KOG0218|consen  799 EIIIKNGRHPVIESLLVDYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLT  878 (1070)
T ss_pred             hhhhhcCCCchHHHHhhhccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHH
Confidence            45689999999985444458999999999988999999999999999999999999999999999999999999999999


Q ss_pred             hcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297          85 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus        85 ~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      ++|..+......++|..+|..-+.|.+-.+..+++||||.++||+..|+.++..+.++++.+...+-++++||+..+.++
T Consensus       879 RmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~ei  958 (1070)
T KOG0218|consen  879 RMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEI  958 (1070)
T ss_pred             hhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999998899987667889999999888777


Q ss_pred             hcccc-ceeeeeE
Q psy5297         165 SRVIP-TFRNVHE  176 (185)
Q Consensus       165 ~d~~~-~l~~g~i  176 (185)
                      ..+.. .+.+.++
T Consensus       959 e~~f~gqv~nyHm  971 (1070)
T KOG0218|consen  959 ESGFPGQVRNYHM  971 (1070)
T ss_pred             hcCCCccccceee
Confidence            65432 3444444

>KOG0062|consensus

Probab=99.86  E-value=2.4e-22  Score=172.00  Aligned_cols=149  Identities=15%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-------HH--HHhhCceecCCCC-------------------
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-------VF--LAQIGCFVPCDSA-------------------   74 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-------~~--~~~~g~~v~~~~~-------------------   74 (185)
                      ..+.+++++++.-+.++++|+||+||||++|++ |..       ..  +.+++ |..|...                   
T Consensus       378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~-~f~Qhhvd~l~~~v~~vd~~~~~~pG  456 (582)
T KOG0062|consen  378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIK-YFAQHHVDFLDKNVNAVDFMEKSFPG  456 (582)
T ss_pred             hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceec-chhHhhhhHHHHHhHHHHHHHHhCCC
Confidence            588999999999999999999999999999999 211       11  11223 4444320                   


Q ss_pred             -CcchhhHHHhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe
Q psy5297          75 -TISVVDQIFTRVGAADS-QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF  151 (185)
Q Consensus        75 -~~~~~~~~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~  151 (185)
                       ....+..-+..+|++.. ....+.+||||||-|+++|... .+|-+|+||||   |+.+|.+++..+ .+.++. .+..
T Consensus       457 ~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP---TNhLD~dsl~AL-~~Al~~-F~GG  531 (582)
T KOG0062|consen  457 KTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP---TNHLDRDSLGAL-AKALKN-FNGG  531 (582)
T ss_pred             CCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC---CccccHHHHHHH-HHHHHh-cCCc
Confidence             01135566778888743 4555799999999999999998 99999999999   999998888664 477776 7778


Q ss_pred             EEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         152 TLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       152 vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      ||++||| +.+..+|+++|++++|+|.-
T Consensus       532 Vv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  532 VVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             EEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            9999999 77888999999999999864

>KOG0066|consensus

Probab=99.85  E-value=3.9e-22  Score=168.69  Aligned_cols=151  Identities=16%  Similarity=0.128  Sum_probs=114.6

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH--HHhhC-ceecCCC-------------------------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--LAQIG-CFVPCDS-------------------------   73 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~--~~~~g-~~v~~~~-------------------------   73 (185)
                      ++..+.+.|+.|-.|+.|+|+||||-|||||||-|+.-.+  -.++- .++-|+.                         
T Consensus       276 Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee  355 (807)
T KOG0066|consen  276 GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEE  355 (807)
T ss_pred             cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHH
Confidence            3568889999999999999999999999999999943111  00000 0000000                         


Q ss_pred             -------------------------------CCcchhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          74 -------------------------------ATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        74 -------------------------------~~~~~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                                                     .--.++..++.-+|+. +..+++...||||+|.|+++||+| .+|.++.
T Consensus       356 ~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLM  435 (807)
T KOG0066|consen  356 AKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLM  435 (807)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeee
Confidence                                           0011355677777776 456788899999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~  177 (185)
                      ||||   |+.+|..+..|+- .+|.- ...|.+|+||| ..+..+|+.|+.+++.++-
T Consensus       436 LDEP---TNHLDLNAVIWLd-NYLQg-WkKTLLIVSHDQgFLD~VCtdIIHLD~qkLh  488 (807)
T KOG0066|consen  436 LDEP---TNHLDLNAVIWLD-NYLQG-WKKTLLIVSHDQGFLDSVCTDIIHLDNQKLH  488 (807)
T ss_pred             ecCC---ccccccceeeehh-hHHhh-hhheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence            9999   8999988777743 44443 67899999999 8888999999999987764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.85  E-value=5.8e-21  Score=168.05  Aligned_cols=148  Identities=15%  Similarity=0.106  Sum_probs=107.3

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH--------HHHHhh-CceecCCCCCc---------------
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS--------VFLAQI-GCFVPCDSATI---------------   76 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i--------~~~~~~-g~~v~~~~~~~---------------   76 (185)
                      +++..+++.+|++++|+.+.|.||||||||||+|+|+.+        .+-... ..|+||.+-..               
T Consensus       404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~  483 (604)
T COG4178         404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP  483 (604)
T ss_pred             CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC
Confidence            346789999999999999999999999999999999433        222111 24777765111               


Q ss_pred             ----chhhHHHhhcCccccc------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH
Q psy5297          77 ----SVVDQIFTRVGAADSQ------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA  145 (185)
Q Consensus        77 ----~~~~~~l~~~~l~~~~------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~  145 (185)
                          ..+.+++.++++++..      ++--..||+|||||+++||.+ ++|++++|||-   |+.+|...-.. +.+.++
T Consensus       484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA---TsALDe~~e~~-l~q~l~  559 (604)
T COG4178         484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA---TSALDEETEDR-LYQLLK  559 (604)
T ss_pred             CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc---hhccChHHHHH-HHHHHH
Confidence                1244567777876543      333457999999999999999 99999999999   55555443333 334444


Q ss_pred             hc-CCCeEEEecChhHHHHhhcccccee
Q psy5297         146 SN-RQPFTLFATHFHEIALLSRVIPTFR  172 (185)
Q Consensus       146 ~~-~~~~vii~tH~~~~~~~~d~~~~l~  172 (185)
                      ++ .+.|||-++|...+..+.++.+-+.
T Consensus       560 ~~lp~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         560 EELPDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             hhCCCCEEEEeccchhhHHHHhhheeec
Confidence            43 5899999999987777776655443

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.85  E-value=5e-21  Score=147.20  Aligned_cols=138  Identities=18%  Similarity=0.166  Sum_probs=85.7

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh----hCc-------eecCCC--CCcc-hhhHHHhhcCcccccccC
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ----IGC-------FVPCDS--ATIS-VVDQIFTRVGAADSQYRG   95 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~----~g~-------~v~~~~--~~~~-~~~~~l~~~~l~~~~~~~   95 (185)
                      .+...++.+.+|+||||||||++|..|........    ...       ++-...  .... .+++-+..+  ......+
T Consensus        16 ~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~~~~~   93 (178)
T cd03239          16 TVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLV--LQGKVEQ   93 (178)
T ss_pred             EEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEe--cCCcCcc
Confidence            33333334999999999999999999954322100    000       000000  0000 011111111  1111222


Q ss_pred             cCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccc
Q psy5297          96 ISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPT  170 (185)
Q Consensus        96 ~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~  170 (185)
                      +  ||+||+||+++|+++     .+|+++++|||++++|+.....+.+.+ ..+.+ .+.++|++||+.+....+|+++.
T Consensus        94 ~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L-~~~~~-~g~tiIiiSH~~~~~~~adrvi~  169 (178)
T cd03239          94 I--LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMI-KEMAK-HTSQFIVITLKKEMFENADKLIG  169 (178)
T ss_pred             c--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEECCHHHHhhCCeEEE
Confidence            3  999999999999986     489999999997776666555554543 55555 47899999999666778999998


Q ss_pred             eee
Q psy5297         171 FRN  173 (185)
Q Consensus       171 l~~  173 (185)
                      +..
T Consensus       170 i~~  172 (178)
T cd03239         170 VLF  172 (178)
T ss_pred             EEE
Confidence            876

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0066|consensus

Probab=99.84  E-value=3.6e-21  Score=162.87  Aligned_cols=150  Identities=17%  Similarity=0.136  Sum_probs=108.2

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--HHhhCceecCCC-----CCcch-------
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--LAQIGCFVPCDS-----ATISV-------   78 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--~~~~g~~v~~~~-----~~~~~-------   78 (185)
                      +.++.+.+++|.|.--..++|+||||.||||||+++        |...-  +-++| +..|..     ..-+.       
T Consensus       598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG-~FdQh~~E~L~~Eetp~EyLqr~  676 (807)
T KOG0066|consen  598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIG-WFDQHANEALNGEETPVEYLQRK  676 (807)
T ss_pred             CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeee-chhhhhHHhhccccCHHHHHHHh
Confidence            456789999999999999999999999999999999        33221  11234 333332     11122       


Q ss_pred             -------hhHHHhhcCccccc-ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297          79 -------VDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ  149 (185)
Q Consensus        79 -------~~~~l~~~~l~~~~-~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~  149 (185)
                             +...+..||+.... .-.+..|||||+.|+++|... ..|++||||||   |+.+|..++-. +.+.+++ .+
T Consensus       677 FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP---TNNLDIESIDA-LaEAIne-y~  751 (807)
T KOG0066|consen  677 FNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP---TNNLDIESIDA-LAEAINE-YN  751 (807)
T ss_pred             cCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC---CCCcchhhHHH-HHHHHHh-cc
Confidence                   33445556664332 345789999999999999987 99999999999   77777666644 3366665 67


Q ss_pred             CeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         150 PFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       150 ~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      ..||++||| ..+.+.....|++.+..|
T Consensus       752 GgVi~VsHDeRLi~eT~C~LwVvE~Q~i  779 (807)
T KOG0066|consen  752 GGVIMVSHDERLIVETDCNLWVVENQGI  779 (807)
T ss_pred             CcEEEEecccceeeecCceEEEEccCCh
Confidence            789999999 556666667788877655

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.82  E-value=1.3e-20  Score=159.79  Aligned_cols=136  Identities=19%  Similarity=0.233  Sum_probs=99.7

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHH-HHHH---------------H-----------HHhh--C--------ceecCCC--
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------F-----------LAQI--G--------CFVPCDS--   73 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------~-----------~~~~--g--------~~v~~~~--   73 (185)
                      ..+|++++|+||||-||||-+|++ |.+.               +           +..+  +        .||..-+  
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~  176 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV  176 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence            478999999999999999999999 3221               0           0000  0        0111100  


Q ss_pred             ------------CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHH-
Q psy5297          74 ------------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACS-  139 (185)
Q Consensus        74 ------------~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~-  139 (185)
                                  ..-..++++.++++++..+++.+++||||+.||++||.++ .+.+++++|||   ++.+|....... 
T Consensus       177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp---sSyLDi~qRl~~a  253 (591)
T COG1245         177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP---SSYLDIRQRLNAA  253 (591)
T ss_pred             hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC---cccccHHHHHHHH
Confidence                        1112577888999999999999999999999999999999 99999999999   666665554432 


Q ss_pred             -HHHHHHhcCCCeEEEecChhHH-HHhhcccccee
Q psy5297         140 -IARELASNRQPFTLFATHFHEI-ALLSRVIPTFR  172 (185)
Q Consensus       140 -il~~l~~~~~~~vii~tH~~~~-~~~~d~~~~l~  172 (185)
                       +++.+.+ .+++||++.||.-+ ..++|.+-++.
T Consensus       254 r~Irel~~-~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         254 RVIRELAE-DGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             HHHHHHhc-cCCeEEEEechHHHHHHhhheeEEEe
Confidence             3577776 48999999999554 45677665553

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.81  E-value=6.3e-20  Score=176.98  Aligned_cols=101  Identities=11%  Similarity=0.068  Sum_probs=83.7

Q ss_pred             HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297          83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH  157 (185)
Q Consensus        83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH  157 (185)
                      +..+|+... +.++..+|||||.||+.||..| .+   +.+++|||||.|+.+.|...+...+ +.|.+ .|.|||+++|
T Consensus      1683 L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l-~~L~~-~g~tvivieH 1760 (1809)
T PRK00635       1683 LIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQL-RTLVS-LGHSVIYIDH 1760 (1809)
T ss_pred             HHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHH-HHHHh-cCCeEEEEeC
Confidence            344565543 5788999999999999999999 54   6899999999998888877777654 77876 7999999999


Q ss_pred             hhHHHHhhccccce------eeeeEEEEeccCCC
Q psy5297         158 FHEIALLSRVIPTF------RNVHESKYLYHTNV  185 (185)
Q Consensus       158 ~~~~~~~~d~~~~l------~~g~i~~~~~~~~~  185 (185)
                      +.++.+.||.++-|      +.|+|++.|+|+++
T Consensus      1761 ~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i 1794 (1809)
T PRK00635       1761 DPALLKQADYLIEMGPGSGKTGGKILFSGPPKDI 1794 (1809)
T ss_pred             CHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHH
Confidence            98888889999865      46899999998764

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.81  E-value=8.8e-20  Score=163.08  Aligned_cols=99  Identities=14%  Similarity=0.032  Sum_probs=81.9

Q ss_pred             hcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChh
Q psy5297          85 RVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFH  159 (185)
Q Consensus        85 ~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~  159 (185)
                      .+|+.. .+.++..+||||+.||+-+|.-| ..   ..+++|||||.|+-..|...+... +.+|.. .|-|||++.|+.
T Consensus       808 dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~V-L~rLvd-~GnTViVIEHNL  885 (935)
T COG0178         808 DVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEV-LHRLVD-KGNTVIVIEHNL  885 (935)
T ss_pred             HcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeccc
Confidence            345543 25788899999999999999988 43   489999999888888887777664 478877 699999999999


Q ss_pred             HHHHhhccccce------eeeeEEEEeccCCC
Q psy5297         160 EIALLSRVIPTF------RNVHESKYLYHTNV  185 (185)
Q Consensus       160 ~~~~~~d~~~~l------~~g~i~~~~~~~~~  185 (185)
                      ++.+.||.++=|      ..|+|++.|+|+++
T Consensus       886 dVIk~AD~IIDLGPeGG~~GG~iva~GTPeev  917 (935)
T COG0178         886 DVIKTADWIIDLGPEGGDGGGEIVASGTPEEV  917 (935)
T ss_pred             ceEeecCEEEEcCCCCCCCCceEEEecCHHHH
Confidence            999999988754      47999999999864

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.81  E-value=7e-20  Score=153.99  Aligned_cols=155  Identities=20%  Similarity=0.245  Sum_probs=114.0

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHHHHHh----------------hCceecCCC-CC--------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQ----------------IGCFVPCDS-AT--------   75 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~----------------~g~~v~~~~-~~--------   75 (185)
                      ..+++.|+||++++|++++++|++||||||+|++| |.......                +...+|... +.        
T Consensus       395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile  474 (593)
T COG2401         395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE  474 (593)
T ss_pred             eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence            45799999999999999999999999999999999 44322111                112333322 11        


Q ss_pred             --------cchhhHHHhhcCcccc--cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297          76 --------ISVVDQIFTRVGAADS--QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAREL  144 (185)
Q Consensus        76 --------~~~~~~~l~~~~l~~~--~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l  144 (185)
                              ...+.+++.+.|+.+.  ..++.++||.||+.|+.||+++ ..|.+++.||..+-+|......+... +..+
T Consensus       475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArk-isel  553 (593)
T COG2401         475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK-ISEL  553 (593)
T ss_pred             HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHH-HHHH
Confidence                    1134567777777653  4677899999999999999999 99999999999555555443333333 3677


Q ss_pred             HhcCCCeEEEecChhH-HHHh-hccccceeeeeEE
Q psy5297         145 ASNRQPFTLFATHFHE-IALL-SRVIPTFRNVHES  177 (185)
Q Consensus       145 ~~~~~~~vii~tH~~~-~~~~-~d~~~~l~~g~i~  177 (185)
                      +++.+.|.+++||..+ ..++ -|+++.+.-|++.
T Consensus       554 aRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         554 AREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             HHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            7668999999999944 5567 6998888877653

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.80  E-value=3.8e-19  Score=145.43  Aligned_cols=76  Identities=16%  Similarity=0.088  Sum_probs=59.0

Q ss_pred             CccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297          97 STFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF  171 (185)
Q Consensus        97 ~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l  171 (185)
                      .+||+||+||+++|+++ .    +|+++++|||++++++.....+.+.+ ..+.+  +.++|++||+..+..+||+++.+
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l-~~~~~--~~tii~isH~~~~~~~~d~~~~l  245 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL-KELSR--SHQVLCITHLPQVAAMADNHFLV  245 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC--CCEEEEEechHHHHHhcCcEEEE
Confidence            34999999999999753 3    99999999996666665544444433 44443  68999999996678899999999


Q ss_pred             eeee
Q psy5297         172 RNVH  175 (185)
Q Consensus       172 ~~g~  175 (185)
                      .++.
T Consensus       246 ~~~~  249 (276)
T cd03241         246 EKEV  249 (276)
T ss_pred             EEec
Confidence            8863

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.80  E-value=2e-19  Score=153.65  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=125.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhC-ceecCCC------C
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIG-CFVPCDS------A   74 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g-~~v~~~~------~   74 (185)
                      ...++|+||++..|||++|.|-.|-|-+.|+.+|        |.|.+             +...| +|+|.+.      .
T Consensus       271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~  350 (501)
T COG3845         271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL  350 (501)
T ss_pred             CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence            4679999999999999999999999999999999        22221             11111 3888876      1


Q ss_pred             Ccch----------------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297          75 TISV----------------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDEL  124 (185)
Q Consensus        75 ~~~~----------------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP  124 (185)
                      .+++                            +.++++.|++. .....++.+||||.+||+-+||-+ .+|++|+..+|
T Consensus       351 ~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP  430 (501)
T COG3845         351 DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP  430 (501)
T ss_pred             CccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC
Confidence            2222                            33445566654 345667899999999999999999 99999999999


Q ss_pred             CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+|+|.-..+.+.+.+ ...++ .|+.|+++|-+ +++..+|||+.+|.+|+++...++++
T Consensus       431 TrGLDvgA~~~I~~~l-~e~r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         431 TRGLDVGAIEFIHERL-LELRD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             CccccHHHHHHHHHHH-HHHHh-cCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence            8887776666666655 34444 69999999998 99999999999999999998877654

>KOG0060|consensus

Probab=99.79  E-value=7.4e-19  Score=152.43  Aligned_cols=147  Identities=13%  Similarity=0.115  Sum_probs=108.7

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHH----------H--hhCceecCCCCC----------cc--
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------A--QIGCFVPCDSAT----------IS--   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~----------~--~~g~~v~~~~~~----------~~--   77 (185)
                      +..+..|+||++++|+-+.|+||||||||+|||++|..+-.          .  +-..|+||.|..          +|  
T Consensus       447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~  526 (659)
T KOG0060|consen  447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK  526 (659)
T ss_pred             CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence            56688999999999999999999999999999999765431          1  212489998721          11  


Q ss_pred             ------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297          78 ------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus        78 ------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~  133 (185)
                                  .+..+++.+++.+.           ...-...||+||+||+++||.+ ++|++-+|||-   |+.++ 
T Consensus       527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~---TSAv~-  602 (659)
T KOG0060|consen  527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC---TSAVT-  602 (659)
T ss_pred             cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech---hhhcc-
Confidence                        23344444443321           2233568999999999999999 99999999999   55566 


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceee
Q psy5297         134 FGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN  173 (185)
Q Consensus       134 ~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~  173 (185)
                      ......+-+.+++ .|.|.|-++|...+.++=|.++-|+.
T Consensus       603 ~dvE~~~Yr~~r~-~giT~iSVgHRkSL~kfHd~~L~~~g  641 (659)
T KOG0060|consen  603 EDVEGALYRKCRE-MGITFISVGHRKSLWKFHDYVLRMDG  641 (659)
T ss_pred             HHHHHHHHHHHHH-cCCeEEEeccHHHHHhhhhEEEEecC
Confidence            3344445456665 69999999999888888777777764

>KOG0217|consensus

Probab=99.76  E-value=2.3e-18  Score=155.94  Aligned_cols=175  Identities=44%  Similarity=0.700  Sum_probs=143.5

Q ss_pred             eEEEcccCCceeeecC-CceeeeceEEEee-CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHH
Q psy5297           5 TLVLNQCRHPIVELQG-GVSYIPNDVYFKS-GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI   82 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~-~~~~il~~isl~i-~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~   82 (185)
                      .+.++..+||.++..- +..++.|++.+.- .+..+..++|||.+|||||||..+...+++|+|+|||+.....+.++.+
T Consensus       866 ~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI  945 (1125)
T KOG0217|consen  866 FLIVKGLRHPCFSLPSTGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRI  945 (1125)
T ss_pred             eeEEecccCceeecCcCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHH
Confidence            6788999999888765 4578999999984 4445566999999999999999999999999999999999999999999


Q ss_pred             HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297          83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA  162 (185)
Q Consensus        83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~  162 (185)
                      +.++|..+..-...++|--+-..--.|.+..+..+++++||..+||+..|+.++...+++++....++-.+++||++.+.
T Consensus       946 ~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~ 1025 (1125)
T KOG0217|consen  946 FTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLC 1025 (1125)
T ss_pred             hhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchh
Confidence            99999988888888877544444445666668899999999999999999999999999999975678889999996655


Q ss_pred             HhhccccceeeeeEEEE
Q psy5297         163 LLSRVIPTFRNVHESKY  179 (185)
Q Consensus       163 ~~~d~~~~l~~g~i~~~  179 (185)
                      ....+-..++.+++-..
T Consensus      1026 ~~~~~~p~Vrl~~Ma~~ 1042 (1125)
T KOG0217|consen 1026 VDFMHHPQVRLLHMACV 1042 (1125)
T ss_pred             HhhhcCccccchhheee
Confidence            44444444555555443

>KOG0064|consensus

Probab=99.74  E-value=3.1e-18  Score=147.49  Aligned_cols=145  Identities=16%  Similarity=0.080  Sum_probs=104.4

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHH---------HhhCceecCCC-CCcc--------------
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------AQIGCFVPCDS-ATIS--------------   77 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~---------~~~g~~v~~~~-~~~~--------------   77 (185)
                      ...++..++|++++|-.+.|+||||||||+|+|+||.++--         .+...|+||.| +...              
T Consensus       494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~  573 (728)
T KOG0064|consen  494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ  573 (728)
T ss_pred             cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHH
Confidence            45688999999999999999999999999999999776531         22335899977 1111              


Q ss_pred             ---------hhhHHHhhcCcccccc---------cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          78 ---------VVDQIFTRVGAADSQY---------RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        78 ---------~~~~~l~~~~l~~~~~---------~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                               -...++..+.+++...         ..-..||||+|||+++||.+ ++|+..+|||-|+..+..-    ..
T Consensus       574 ~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv----E~  649 (728)
T KOG0064|consen  574 MKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV----EG  649 (728)
T ss_pred             HHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch----HH
Confidence                     1233444444433222         22346999999999999999 9999999999966655432    33


Q ss_pred             HHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297         139 SIARELASNRQPFTLFATHFHEIALLSRVIPTF  171 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l  171 (185)
                      .+.+..+. .|.+.+-+||...+-.+-+.++-+
T Consensus       650 ~i~~~ak~-~gi~llsithrpslwk~h~~ll~~  681 (728)
T KOG0064|consen  650 KIFQAAKD-AGISLLSITHRPSLWKYHTHLLEF  681 (728)
T ss_pred             HHHHHHHh-cCceEEEeecCccHHHHHHHHHhc
Confidence            34455555 799999999987766666655544

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.72  E-value=6.5e-18  Score=156.70  Aligned_cols=100  Identities=12%  Similarity=0.037  Sum_probs=83.9

Q ss_pred             HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      ++.+|+.+. +++++.+||+||+||+.||+++ .+|  +++|||||++|+++.+...+.+.+ +.+++ .|.|||++||+
T Consensus       473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L-~~L~~-~G~TVIvVeH~  550 (943)
T PRK00349        473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETL-KHLRD-LGNTLIVVEHD  550 (943)
T ss_pred             hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCC
Confidence            456677765 7999999999999999999999 776  999999998888888877777655 77776 69999999999


Q ss_pred             hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         159 HEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      .+....||++++|      ++|++++.+++++
T Consensus       551 ~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e  582 (943)
T PRK00349        551 EDTIRAADYIVDIGPGAGVHGGEVVASGTPEE  582 (943)
T ss_pred             HHHHHhCCEEEEeccccCCCCCEEeeccCHHH
Confidence            4444579999999      9999998887653

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.72  E-value=7.7e-18  Score=155.93  Aligned_cols=100  Identities=12%  Similarity=0.043  Sum_probs=83.2

Q ss_pred             HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +..+|+... +++++.+||+||+||+.||+++ .+|  +++|||||++|+++.+...+...+ +.+++ .|.|||++||+
T Consensus       471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L-~~L~~-~G~TVIvVeHd  548 (924)
T TIGR00630       471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTL-KRLRD-LGNTVIVVEHD  548 (924)
T ss_pred             HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHH-HHHHh-CCCEEEEEECC
Confidence            345677654 6899999999999999999999 775  899999998888888877776654 77776 59999999999


Q ss_pred             hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         159 HEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      .+....||++++|      ++|++++.+++++
T Consensus       549 ~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~e  580 (924)
T TIGR00630       549 EETIRAADYVIDIGPGAGIHGGEVVASGTPEE  580 (924)
T ss_pred             HHHHhhCCEEEEecccccCCCCEEeeccCHHH
Confidence            5545699999999      8999998887643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0221|consensus

Probab=99.72  E-value=3.4e-18  Score=148.37  Aligned_cols=155  Identities=41%  Similarity=0.752  Sum_probs=132.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR   85 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~   85 (185)
                      ++++|.+|++.+.-- ..+|+|+.+..-++|++.+|+|||-||||..+|.+|.|++++++|+|||++.+.+..++.++.+
T Consensus       570 l~I~ngrh~l~e~~~-dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tr  648 (849)
T KOG0221|consen  570 LRIQNGRHPLMELCA-DTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTR  648 (849)
T ss_pred             HHHHcCChhHHHHHH-HhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHH
Confidence            457778888655432 3689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC---CeEEEecChhHHH
Q psy5297          86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ---PFTLFATHFHEIA  162 (185)
Q Consensus        86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~---~~vii~tH~~~~~  162 (185)
                      ++-.+......++|.-.-.|.....+..+..+++|+||.+.||+..|+-++...++.++.. +|   ..|++.||.+++.
T Consensus       649 i~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~-rg~~~PrifvcThfheL~  727 (849)
T KOG0221|consen  649 IHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLA-RGPTCPRIFVCTHFHELV  727 (849)
T ss_pred             hhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHh-cCCCCCeEEEeccHHHhh
Confidence            9877777777888877777766666666889999999999999999999998887777765 34   4599999985543

>KOG0065|consensus

Probab=99.70  E-value=8.7e-18  Score=156.71  Aligned_cols=161  Identities=16%  Similarity=0.141  Sum_probs=125.8

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-----------HHHHHHH---------hhCceecCCCCCcc-----
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-----------GVSVFLA---------QIGCFVPCDSATIS-----   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-----------G~i~~~~---------~~g~~v~~~~~~~~-----   77 (185)
                      ..+++|++.-+++|+.+.++||.||||||||+++           |.|.+.+         ....|++|....++     
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            3699999999999999999999999999999999           3232211         11237777653222     


Q ss_pred             ---------------------------hhhHHHhhcCcccccccC-----cCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297          78 ---------------------------VVDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIKKC-TENSLVIIDEL  124 (185)
Q Consensus        78 ---------------------------~~~~~l~~~~l~~~~~~~-----~~~lS~g~~q~~~ia~~l-~~p~llllDEP  124 (185)
                                                 ..+.+++.+|++.-.+..     .+-.|||||+|++++.++ .+++++++||+
T Consensus       208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~  287 (1391)
T KOG0065|consen  208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI  287 (1391)
T ss_pred             ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence                                       134678888988766544     456999999999999999 99999999999


Q ss_pred             CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++|+|....-.+...+ +.+....+.|++++=+.  .++-++-|.+.+|.+|++++.|+.++
T Consensus       288 t~GLDSsTal~iik~l-r~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~  348 (1391)
T KOG0065|consen  288 TRGLDSSTAFQIIKAL-RQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE  348 (1391)
T ss_pred             cccccHHHHHHHHHHH-HHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHH
Confidence            7777766655555544 55555468898888886  78899999999999999999998765

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.64  E-value=1e-15  Score=124.84  Aligned_cols=75  Identities=15%  Similarity=0.052  Sum_probs=54.7

Q ss_pred             cCccHHHHHHHHHHHHhC----------CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh
Q psy5297          96 ISTFMMEMKETATVIKKC----------TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL  164 (185)
Q Consensus        96 ~~~lS~g~~q~~~ia~~l----------~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~  164 (185)
                      ...+|.||+|++.+|+++          .+|+++|+|||   ++.+|.....+ +++.+.+ .+ .+++++|+ .++..+
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp---~a~LD~~~~~~-l~~~l~~-~~-q~ii~~~~~~~~~~~  254 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDV---LAELDLGRQAA-LLDAIEG-RV-QTFVTTTDLADFDAL  254 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCc---chhcCHHHHHH-HHHHhhc-CC-CEEEEeCCchhccch
Confidence            445799999999999874          69999999999   55556554444 3355654 34 45555554 777777


Q ss_pred             h---ccccceeeeeE
Q psy5297         165 S---RVIPTFRNVHE  176 (185)
Q Consensus       165 ~---d~~~~l~~g~i  176 (185)
                      |   ++++.+++|++
T Consensus       255 ~~~~~~i~~l~~g~i  269 (270)
T cd03242         255 WLRRAQIFRVDAGTL  269 (270)
T ss_pred             hccCccEEEEeCcEE
Confidence            7   67889999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.57  E-value=1.2e-14  Score=114.69  Aligned_cols=71  Identities=15%  Similarity=0.117  Sum_probs=45.8

Q ss_pred             CccHHHHHHHHHHHHh----C-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297          97 STFMMEMKETATVIKK----C-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHFHEIALLSRVIP  169 (185)
Q Consensus        97 ~~lS~g~~q~~~ia~~----l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~~~~~~~~d~~~  169 (185)
                      ..+|+|||.+++||-.    - ...++++||||   .+.+|........  +..+.  .+..+|++||+..+...||+.+
T Consensus       135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv---d~~LD~~~~~~l~~~l~~~~--~~~Q~ii~Th~~~~~~~a~~~~  209 (220)
T PF02463_consen  135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEV---DAALDEQNRKRLADLLKELS--KQSQFIITTHNPEMFEDADKLI  209 (220)
T ss_dssp             TGS-HHHHHHHHHHHHHHHHTCS--SEEEEEST---TTTS-HHHHHHHHHHHHHHT--TTSEEEEE-S-HHHHTT-SEEE
T ss_pred             ccccccccccccccccccccccccccccccccc---cccccccccccccccccccc--cccccccccccccccccccccc
Confidence            3899999999998743    2 57889999999   5556655544422  23333  2578999999998999998876


Q ss_pred             cee
Q psy5297         170 TFR  172 (185)
Q Consensus       170 ~l~  172 (185)
                      .+.
T Consensus       210 ~v~  212 (220)
T PF02463_consen  210 GVT  212 (220)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            543

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

Probab=99.57  E-value=4.2e-15  Score=134.86  Aligned_cols=164  Identities=30%  Similarity=0.517  Sum_probs=138.6

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCC-CcchhhH
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA-TISVVDQ   81 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~-~~~~~~~   81 (185)
                      +..+.+.+.+||.+.-     .+++++.+..+ =..+.++|||-.|||+.||++|...+++|.|.++|.... .++++..
T Consensus       290 ~~~l~l~~~~HPll~~-----~v~~~i~~~~e-~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~  363 (753)
T COG1193         290 DGVLELLDARHPLLKE-----DVPNDLELGEE-LDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVK  363 (753)
T ss_pred             CceEEeccccCccCcc-----ccccccccccc-cceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHH
Confidence            4568899999999872     27788888754 378999999999999999999999999999999999885 8889999


Q ss_pred             HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297          82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI  161 (185)
Q Consensus        82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~  161 (185)
                      ++...|-+.......++||+-|...+.++.. .+ .++++||.++||+|.++.++...+++++.+ .++.++.+||+.++
T Consensus       364 i~aDIGDeQsIeqsLSTFSshm~~i~~il~~-~d-sLvl~DElg~GTdp~EgaaLai~ile~l~~-~~~~~~~tTH~~el  440 (753)
T COG1193         364 IFADIGDEQSIEQSLSTFSSHMTNIVEILEK-AD-SLVLFDELGSGTDPDEGAALAIAILEDLLE-KPAKIVATTHYREL  440 (753)
T ss_pred             hhhccCcHHHHHHHHhhhHHHHHHHHHHHhh-cc-hhHHHHHhhcCCCcchhHHHHHHHHHHHHh-cccceehHhhHHHH
Confidence            9988888888899999999999998888733 23 899999999999999999998888899987 79999999999777


Q ss_pred             HHhhccccceeeee
Q psy5297         162 ALLSRVIPTFRNVH  175 (185)
Q Consensus       162 ~~~~d~~~~l~~g~  175 (185)
                      ..++-....+.+..
T Consensus       441 k~~~~~~~~v~nas  454 (753)
T COG1193         441 KALAAEREGVENAS  454 (753)
T ss_pred             HHHHhcchhhhchh
Confidence            76654433333333

>KOG0063|consensus

Probab=99.55  E-value=9.7e-15  Score=123.52  Aligned_cols=150  Identities=13%  Similarity=0.092  Sum_probs=105.0

Q ss_pred             ceeeeceEEEeeCCc-----eeEEEEccCCCcHHHHHHHH-HHHHHH-------HhhCceecCCC-C-------------
Q psy5297          22 VSYIPNDVYFKSGEV-----SFNLVTGPNMGGKSTYIRSI-GVSVFL-------AQIGCFVPCDS-A-------------   74 (185)
Q Consensus        22 ~~~il~~isl~i~~g-----~~~~l~G~NGsGKSTLlk~i-G~i~~~-------~~~g~~v~~~~-~-------------   74 (185)
                      .+.-..++.+.+..|     +++..+|.||-|||||++++ |...-.       -.+. |=||.- .             
T Consensus       348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVS-ykpqkispK~~~tvR~ll~~k  426 (592)
T KOG0063|consen  348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVS-YKPQKISPKREGTVRQLLHTK  426 (592)
T ss_pred             ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccccccee-ccccccCccccchHHHHHHHH
Confidence            345778888888776     68999999999999999999 311000       0111 444432 0             


Q ss_pred             ------CcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc
Q psy5297          75 ------TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASN  147 (185)
Q Consensus        75 ------~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~  147 (185)
                            ....+.+.++.+.+++..++.+..||||++||+++|..+ ...++++.|||.+-+|...+......+.+.+.. 
T Consensus       427 Ir~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilh-  505 (592)
T KOG0063|consen  427 IRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILH-  505 (592)
T ss_pred             hHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHh-
Confidence                  011244556666777888999999999999999999999 999999999995555544333333333344444 


Q ss_pred             CCCeEEEecCh-hHHHHhhccccceee
Q psy5297         148 RQPFTLFATHF-HEIALLSRVIPTFRN  173 (185)
Q Consensus       148 ~~~~vii~tH~-~~~~~~~d~~~~l~~  173 (185)
                      .++|-+++.|| .-...++||+++.+.
T Consensus       506 akktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  506 AKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             ccchhhhhhhHHHHHHhhcceeEEEec
Confidence            57899999999 445568999887753

>PRK13695 putative NTPase; Provisional

Probab=99.50  E-value=9.2e-14  Score=106.09  Aligned_cols=138  Identities=15%  Similarity=0.167  Sum_probs=87.7

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHHH-H-hhCceecCCC------CCcchh------hHHHhhcCc-c-cccccCcCccHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVFL-A-QIGCFVPCDS------ATISVV------DQIFTRVGA-A-DSQYRGISTFMM  101 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~~-~-~~g~~v~~~~------~~~~~~------~~~l~~~~l-~-~~~~~~~~~lS~  101 (185)
                      .++|+|+||+|||||++.+..-... + ....|+.++.      ..+...      ...+...+. . ....+....+|+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg   81 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED   81 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence            4789999999999999988322111 0 1111333321      000000      111112221 1 112344567999


Q ss_pred             HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEE
Q psy5297         102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      +++.+..+++.. .+|+++++||| ..++..+.. ..+.+ ..+.+ .+.++|+++|+..+..++|++..+.+|++...
T Consensus        82 le~~~~~l~~~~l~~~~~lllDE~-~~~e~~~~~-~~~~l-~~~~~-~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~  156 (174)
T PRK13695         82 LERIGIPALERALEEADVIIIDEI-GKMELKSPK-FVKAV-EEVLD-SEKPVIATLHRRSVHPFVQEIKSRPGGRVYEL  156 (174)
T ss_pred             HHHHHHHHHHhccCCCCEEEEECC-CcchhhhHH-HHHHH-HHHHh-CCCeEEEEECchhhHHHHHHHhccCCcEEEEE
Confidence            999999988877 89999999996 225555533 33434 44444 68999999999888899999999999988543

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.47  E-value=1.6e-13  Score=111.92  Aligned_cols=53  Identities=9%  Similarity=0.130  Sum_probs=37.0

Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH--------------HHhhccccceeeee
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI--------------ALLSRVIPTFRNVH  175 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~--------------~~~~d~~~~l~~g~  175 (185)
                      .+|+++++|||+   ..   ..+ ..+++.+.  .|.++|++||+..+              ..+++|+++|++++
T Consensus       193 ~~P~villDE~~---~~---e~~-~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~  259 (270)
T TIGR02858       193 MSPDVIVVDEIG---RE---EDV-EALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK  259 (270)
T ss_pred             CCCCEEEEeCCC---cH---HHH-HHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence            699999999993   22   222 33335543  48999999997444              24579999998765

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.46  E-value=3.1e-13  Score=103.49  Aligned_cols=140  Identities=19%  Similarity=0.224  Sum_probs=88.1

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHHHHH-HH------------------------Hh------hCceecCCCCCcchh
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-FL------------------------AQ------IGCFVPCDSATISVV   79 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i~-~~------------------------~~------~g~~v~~~~~~~~~~   79 (185)
                      +++. -.|+.++|.||+||||||..|+.-. +.                        ..      .| |.......+.++
T Consensus        33 LeF~-apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g-~FlRAEs~yn~a  110 (233)
T COG3910          33 LEFR-APITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIG-FFLRAESFYNVA  110 (233)
T ss_pred             cccc-CceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcc-eEEehhHHHHHH
Confidence            4443 4899999999999999999993210 00                        00      01 111100111111


Q ss_pred             hHHHhhcCc-ccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          80 DQIFTRVGA-ADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        80 ~~~l~~~~l-~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      . .++.+.- ...-.+.....|.|+-=..-+.+.+...-+++||||-+++++.-+-++... +..+.+ .|..+||+||.
T Consensus       111 s-~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~-l~~la~-sGaQ~IiATHS  187 (233)
T COG3910         111 S-YLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAI-LRDLAD-SGAQIIIATHS  187 (233)
T ss_pred             H-HHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHH-HHHHHh-cCCeEEEEecC
Confidence            1 2222111 112234466789999888788888888999999999888888765555543 577877 69999999998


Q ss_pred             hHHHHhh-ccccceeeee
Q psy5297         159 HEIALLS-RVIPTFRNVH  175 (185)
Q Consensus       159 ~~~~~~~-d~~~~l~~g~  175 (185)
                      .-+..+. -+++-++.+-
T Consensus       188 PiLlAiP~A~I~~~~~~g  205 (233)
T COG3910         188 PILLAIPGAEIYEISESG  205 (233)
T ss_pred             hhheeCCCcEEEEEecCC
Confidence            6665553 4556666554

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.41  E-value=7e-13  Score=101.60  Aligned_cols=134  Identities=12%  Similarity=0.018  Sum_probs=80.5

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcC----------cccccccCcCccHHHHHH-
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVG----------AADSQYRGISTFMMEMKE-  105 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~lS~g~~q-  105 (185)
                      ++.|.||.|+|||||.-.+..-... +....|+.-+.. ...+.+.+..+|          .....+..+..+|+|++| 
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~-~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~   79 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-PEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL   79 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence            3689999999999998776332222 112224433321 111111222223          233456777889999987 


Q ss_pred             ----HHHHHHh-C-CCCeEEEEeCCCCCCCcCChhHHH--HHHHHHHHhcCCCeEEEecCh-hH---------HHHhhcc
Q psy5297         106 ----TATVIKK-C-TENSLVIIDELGRGTSTFDGFGMA--CSIARELASNRQPFTLFATHF-HE---------IALLSRV  167 (185)
Q Consensus       106 ----~~~ia~~-l-~~p~llllDEP~~g~~~~d~~~~~--~~il~~l~~~~~~~vii~tH~-~~---------~~~~~d~  167 (185)
                          +..+.+. . .+|+++++|||++.++.-+.....  ..++..+++ .|.|+|+++|. ..         +..+||.
T Consensus        80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~  158 (187)
T cd01124          80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDG  158 (187)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccCcCceeEeeeE
Confidence                2334443 4 799999999997766531121111  113466665 58999999996 33         5678888


Q ss_pred             ccceee
Q psy5297         168 IPTFRN  173 (185)
Q Consensus       168 ~~~l~~  173 (185)
                      ++.|+.
T Consensus       159 ii~l~~  164 (187)
T cd01124         159 VIRLRL  164 (187)
T ss_pred             EEEEEE
Confidence            888763

A related protein is found in archaea.

>TIGR00634 recN DNA repair protein RecN

Probab=99.31  E-value=3.2e-12  Score=114.09  Aligned_cols=76  Identities=16%  Similarity=0.102  Sum_probs=61.9

Q ss_pred             CccHHHHHHHHHHHHhC-CC----CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297          97 STFMMEMKETATVIKKC-TE----NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF  171 (185)
Q Consensus        97 ~~lS~g~~q~~~ia~~l-~~----p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l  171 (185)
                      ..+|+||+||+++|+++ ..    |+++|||||++|+++.....+...+ ..+.+  +.+||++||+..+...||++++|
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l-~~l~~--~~~vi~iTH~~~~~~~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKL-AQLSE--RHQVLCVTHLPQVAAHADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhc--CCEEEEEEChHHHHHhcCeEEEE
Confidence            46899999999999987 53    6999999998887777666555544 56653  78999999997667799999999


Q ss_pred             eeee
Q psy5297         172 RNVH  175 (185)
Q Consensus       172 ~~g~  175 (185)
                      +++.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            8764

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.30  E-value=2.1e-11  Score=97.26  Aligned_cols=143  Identities=16%  Similarity=0.079  Sum_probs=84.6

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHH-HHhhCceecCCCCCcchhhHHHhhcCcc--ccc-----------ccCcC
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-LAQIGCFVPCDSATISVVDQIFTRVGAA--DSQ-----------YRGIS   97 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-~~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~-----------~~~~~   97 (185)
                      .+++|.++.|.|++|+|||||...+..-.. .+..+.|+..+........+ ++.++++  +..           -....
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~   99 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFE   99 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccc
Confidence            468999999999999999999988842211 12223365554322222222 2233321  110           11223


Q ss_pred             ccHHHHHHHHHHHHhC---CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297          98 TFMMEMKETATVIKKC---TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTF  171 (185)
Q Consensus        98 ~lS~g~~q~~~ia~~l---~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l  171 (185)
                      ..+.++.+.+..+...   .+|+++++|||++..+..+...+.+.+  +..+++ .+.|+++++|. ......++++..+
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l  178 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSI  178 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhh
Confidence            3466778888866655   399999999997655666655554432  344455 58899999996 4333333444444


Q ss_pred             eeeeE
Q psy5297         172 RNVHE  176 (185)
Q Consensus       172 ~~g~i  176 (185)
                      .+|.+
T Consensus       179 ~DgvI  183 (234)
T PRK06067        179 CDVYL  183 (234)
T ss_pred             eEEEE
Confidence            44444

>TIGR00618 sbcc exonuclease SbcC

Probab=99.29  E-value=4.6e-12  Score=120.11  Aligned_cols=84  Identities=10%  Similarity=-0.135  Sum_probs=68.0

Q ss_pred             ccccccCcCccHHHHHHHHHHHHhC-C----------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297          89 ADSQYRGISTFMMEMKETATVIKKC-T----------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH  157 (185)
Q Consensus        89 ~~~~~~~~~~lS~g~~q~~~ia~~l-~----------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH  157 (185)
                      ....++++.+|||||++++++|+++ .          +|+++|+||||.|+|+.....+... +..+.. .|.+|+|+||
T Consensus       941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~-l~~l~~-~g~~i~iisH 1018 (1042)
T TIGR00618       941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGI-LDAIRE-GSKMIGIISH 1018 (1042)
T ss_pred             CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeC
Confidence            3456788999999999999999987 5          7999999999777666655555554 467766 6899999999


Q ss_pred             h-hHHHHhhccccceeee
Q psy5297         158 F-HEIALLSRVIPTFRNV  174 (185)
Q Consensus       158 ~-~~~~~~~d~~~~l~~g  174 (185)
                      + .....+|+++.+++.+
T Consensus      1019 ~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1019 VPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred             cHHHHHhhCCEEEEEECC
Confidence            9 6677899999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.27  E-value=2.7e-11  Score=96.72  Aligned_cols=123  Identities=15%  Similarity=0.088  Sum_probs=65.2

Q ss_pred             eeCCceeEEEEccCCCcHHHH-HHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcc--cc--------cccCcCccH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTY-IRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAA--DS--------QYRGISTFM  100 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTL-lk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~--------~~~~~~~lS  100 (185)
                      .+++|++++|+||||+||||| ++.+....-.+....|+..+........++ ..+|.+  +.        .+.. ..+|
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~-~~~~   97 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVY-PLLS   97 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEec-cccc
Confidence            378999999999999999999 566633221222233665443222222222 333331  10        1111 1244


Q ss_pred             HHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcC-ChhHHHHH--HHHHHHhcCCCeEEEecC
Q psy5297         101 MEMKETATVIKKC-----TENSLVIIDELGRGTSTF-DGFGMACS--IARELASNRQPFTLFATH  157 (185)
Q Consensus       101 ~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~-d~~~~~~~--il~~l~~~~~~~vii~tH  157 (185)
                      ++..++..+.+.+     .+|+++++|||++++... |.......  +++.+++ .|.|+++++|
T Consensus        98 ~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~t~~  161 (230)
T PRK08533         98 GNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIILTAN  161 (230)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence            4443333333322     479999999997776332 33322222  2355555 4777666555

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.26  E-value=6.2e-12  Score=111.87  Aligned_cols=80  Identities=10%  Similarity=0.013  Sum_probs=60.3

Q ss_pred             ccCcCccHHHHHHHHHHHHhC-----------CCCeEEEEeCCC-CCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297          93 YRGISTFMMEMKETATVIKKC-----------TENSLVIIDELG-RGTSTFDGFGMACSIARELASNRQPFTLFATHFHE  160 (185)
Q Consensus        93 ~~~~~~lS~g~~q~~~ia~~l-----------~~p~llllDEP~-~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~  160 (185)
                      +.++.+||+||+||++||+++           .+|+++|||||+ +++|+.....+...+ ..+   .+.+||++||+.+
T Consensus       463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l-~~~---~~~~iiiish~~~  538 (562)
T PHA02562        463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSIL-DSL---KDTNVFVISHKDH  538 (562)
T ss_pred             ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHH-HhC---CCCeEEEEECchh
Confidence            346689999999999999875           289999999996 455554444443322 333   3789999999976


Q ss_pred             HHHhhccccceee-eeE
Q psy5297         161 IALLSRVIPTFRN-VHE  176 (185)
Q Consensus       161 ~~~~~d~~~~l~~-g~i  176 (185)
                      ....||++++|.+ |+.
T Consensus       539 ~~~~~d~~~~l~~~~~~  555 (562)
T PHA02562        539 DPQKFDRHLKMEKVGRF  555 (562)
T ss_pred             chhhhhcEEEEEEECCe
Confidence            7788999999987 554

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.25  E-value=1.8e-11  Score=110.41  Aligned_cols=98  Identities=12%  Similarity=0.046  Sum_probs=83.2

Q ss_pred             cCccc-ccccCcCccHHHHHHHHHHHHhC-C--CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297          86 VGAAD-SQYRGISTFMMEMKETATVIKKC-T--ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI  161 (185)
Q Consensus        86 ~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~--~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~  161 (185)
                      +|++. .+++...+||||+.||+.+|..+ +  --=+++||||+.|+-+.|...+...+ +.++. .|-|+|++.||++.
T Consensus       468 VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL-~~LRD-lGNTviVVEHDedt  545 (935)
T COG0178         468 VGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETL-KRLRD-LGNTVIVVEHDEDT  545 (935)
T ss_pred             cCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHH-HHHHh-cCCeEEEEecCHHH
Confidence            35543 26888999999999999999988 4  45699999999999999988777755 88887 79999999999999


Q ss_pred             HHhhccccc------eeeeeEEEEeccCCC
Q psy5297         162 ALLSRVIPT------FRNVHESKYLYHTNV  185 (185)
Q Consensus       162 ~~~~d~~~~------l~~g~i~~~~~~~~~  185 (185)
                      ...||+++=      .+.|+|+++|+++++
T Consensus       546 i~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i  575 (935)
T COG0178         546 IRAADHIIDIGPGAGEHGGEIVAEGTPEEL  575 (935)
T ss_pred             HhhcCEEEeeCCCCCcCCCEEEEccCHHHH
Confidence            999999984      568999999998753

>PRK10869 recombination and repair protein; Provisional

Probab=99.23  E-value=1.3e-11  Score=109.82  Aligned_cols=74  Identities=16%  Similarity=0.087  Sum_probs=59.7

Q ss_pred             ccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccccee
Q psy5297          98 TFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFR  172 (185)
Q Consensus        98 ~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~  172 (185)
                      .+||||+||++||+++ .    +|+++|+|||++|+++.....+...+ ..+++  +.+||++||+..+..+||+.+.+.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l-~~l~~--~~qvi~iTH~~~~~~~ad~~~~v~  506 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLL-RQLGE--STQVMCVTHLPQVAGCGHQHFFVS  506 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHhCCEEEEEe
Confidence            4899999999999987 4    58999999997777776555554533 55543  689999999977889999999988


Q ss_pred             ee
Q psy5297         173 NV  174 (185)
Q Consensus       173 ~g  174 (185)
                      ++
T Consensus       507 k~  508 (553)
T PRK10869        507 KE  508 (553)
T ss_pred             cc
Confidence            64

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.22  E-value=1.3e-11  Score=96.64  Aligned_cols=64  Identities=16%  Similarity=0.111  Sum_probs=39.2

Q ss_pred             CcCccHHHHHHHHHHHHhC-CCC---eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297          95 GISTFMMEMKETATVIKKC-TEN---SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE  160 (185)
Q Consensus        95 ~~~~lS~g~~q~~~ia~~l-~~p---~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~  160 (185)
                      +...+|.|++|.+.++..+ ..+   .++++|||-+++.|.-...+... +..+.+ .+..+|++||...
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~-l~~~~~-~~~QviitTHSp~  300 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIEL-LKELSK-KNIQVIITTHSPF  300 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHH-HHHTGG-GSSEEEEEES-GG
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHH-HHhhCc-cCCEEEEeCccch
Confidence            4566799999998877665 333   99999999666555333333322 233333 3689999999844

>PRK03918 chromosome segregation protein; Provisional

Probab=99.21  E-value=1.8e-11  Score=114.06  Aligned_cols=81  Identities=10%  Similarity=0.004  Sum_probs=61.8

Q ss_pred             ccccCcCccHHHHHHHHH------HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHH
Q psy5297          91 SQYRGISTFMMEMKETAT------VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIAL  163 (185)
Q Consensus        91 ~~~~~~~~lS~g~~q~~~------ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~  163 (185)
                      -.+.++..||+||+++++      +++++ .+|+++|+||||+++|+.....+...+ ..+.. .+.+||++||+.++..
T Consensus       781 g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l-~~~~~-~~~~iiiith~~~~~~  858 (880)
T PRK03918        781 GKERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM-ERYLR-KIPQVIIVSHDEELKD  858 (880)
T ss_pred             CCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHH-HHHHh-cCCEEEEEECCHHHHH
Confidence            346788999999999554      45567 899999999996666665555455543 45544 4789999999977888


Q ss_pred             hhccccceee
Q psy5297         164 LSRVIPTFRN  173 (185)
Q Consensus       164 ~~d~~~~l~~  173 (185)
                      .||++++|..
T Consensus       859 ~~d~~~~l~~  868 (880)
T PRK03918        859 AADYVIRVSL  868 (880)
T ss_pred             hCCeEEEEEe
Confidence            9999999984

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.20  E-value=3.6e-11  Score=97.00  Aligned_cols=76  Identities=13%  Similarity=0.014  Sum_probs=59.4

Q ss_pred             CccHHHH--------HHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcc
Q psy5297          97 STFMMEM--------KETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRV  167 (185)
Q Consensus        97 ~~lS~g~--------~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~  167 (185)
                      ..+|+|+        +|++++|+++ .++++.+|  ||..++..+...  ..+++.++. .+.+.|+.||........+.
T Consensus       128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~--~~i~~~~~~-~~~~~ivls~~la~~~~~pa  202 (249)
T cd01128         128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMD--DVIFEEFKG-TGNMELVLDRRLAERRIFPA  202 (249)
T ss_pred             CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCccc--chHHHHHhc-CCCcEEEEchHHhhCCCCCe
Confidence            3468999        9999999998 99999999  977776433222  123466665 57899999998777778899


Q ss_pred             ccceeeeeEE
Q psy5297         168 IPTFRNVHES  177 (185)
Q Consensus       168 ~~~l~~g~i~  177 (185)
                      |.+++.|++.
T Consensus       203 I~vl~s~sr~  212 (249)
T cd01128         203 IDILKSGTRK  212 (249)
T ss_pred             EEEcCCCCcc
Confidence            9999999874

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0063|consensus

Probab=99.18  E-value=3.6e-11  Score=102.16  Aligned_cols=90  Identities=13%  Similarity=0.146  Sum_probs=67.9

Q ss_pred             hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHH--HHHHHHhcCCCeEEEe
Q psy5297          79 VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACS--IARELASNRQPFTLFA  155 (185)
Q Consensus        79 ~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~--il~~l~~~~~~~vii~  155 (185)
                      .++++..+.+....++.+..+|||+.||.++|.+. +..+++++|||   .+.+|.......  .++.+.. ....||++
T Consensus       194 ~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEp---SsYLDVKQRLkaA~~IRsl~~-p~~YiIVV  269 (592)
T KOG0063|consen  194 KEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEP---SSYLDVKQRLKAAITIRSLIN-PDRYIIVV  269 (592)
T ss_pred             HHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCC---cccchHHHhhhHHHHHHHhhC-CCCeEEEE
Confidence            34456666777788999999999999999999999 99999999999   555665544322  2456554 68899999


Q ss_pred             cChhHHHH-hhcccccee
Q psy5297         156 THFHEIAL-LSRVIPTFR  172 (185)
Q Consensus       156 tH~~~~~~-~~d~~~~l~  172 (185)
                      .||..+.. +.|-+-.+.
T Consensus       270 EHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  270 EHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             EeechHHHhhhcceeEEe
Confidence            99966554 567665543

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.18  E-value=9.2e-11  Score=86.92  Aligned_cols=120  Identities=15%  Similarity=0.156  Sum_probs=62.3

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHH--HhhcCcc---cccccCcCccHHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQI--FTRVGAA---DSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~--l~~~~l~---~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                      +++|.||||+||||+++.+...... .....|+..+.........+  ....+..   ..........+.+..++...+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL   80 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence            4789999999999999999433221 11122555443222111111  1111111   1111222233344445556666


Q ss_pred             hC-CCCeEEEEeCCCCCCCc-------CChh--HHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         112 KC-TENSLVIIDELGRGTST-------FDGF--GMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~-------~d~~--~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +. .+|+++++|||.+-.+.       .+..  .....+.+..++ .+.++++++|.
T Consensus        81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vv~~~~~  136 (165)
T cd01120          81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-GGVTVIFTLQV  136 (165)
T ss_pred             HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCceEEEEEec
Confidence            66 89999999999532211       1111  111112334433 69999999996

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.15  E-value=7.8e-11  Score=110.24  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=58.6

Q ss_pred             ccCcCccHHHHHHHHHHH------HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC-CeEEEecChhHHHHh
Q psy5297          93 YRGISTFMMEMKETATVI------KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ-PFTLFATHFHEIALL  164 (185)
Q Consensus        93 ~~~~~~lS~g~~q~~~ia------~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~-~~vii~tH~~~~~~~  164 (185)
                      ..++..||+||++++++|      +++ .+|++++|||||+++|+.....+...+...++...+ .++|++||+.++...
T Consensus       796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~  875 (895)
T PRK01156        796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV  875 (895)
T ss_pred             cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence            356889999999998754      778 899999999995555554444444433223333123 489999999777789


Q ss_pred             hcccccee
Q psy5297         165 SRVIPTFR  172 (185)
Q Consensus       165 ~d~~~~l~  172 (185)
                      ||+++.+.
T Consensus       876 ~d~ii~~~  883 (895)
T PRK01156        876 ADVAYEVK  883 (895)
T ss_pred             cCeEEEEE
Confidence            99999887

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.14  E-value=2.3e-11  Score=101.04  Aligned_cols=136  Identities=10%  Similarity=0.020  Sum_probs=77.1

Q ss_pred             EEEeeCCceeEEEEccCCCcHHHHHHHHH-HHHHHHhhCceecCCCCCcchhhHHHhhcCcc-cccccCcCccHHHHHHH
Q psy5297          29 VYFKSGEVSFNLVTGPNMGGKSTYIRSIG-VSVFLAQIGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKET  106 (185)
Q Consensus        29 isl~i~~g~~~~l~G~NGsGKSTLlk~iG-~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~  106 (185)
                      +++.+..|+.++++||+|||||||++++. .+--  ..+...-.+...+..-.  -....+. .........++.    .
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~--~~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~----~  208 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK--DERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTP----K  208 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc--cccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCH----H
Confidence            34567789999999999999999999883 2211  11111112221111100  0000010 000001111222    2


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC-eEEEecChhHHHHhhccccceeeeeEEEEecc
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP-FTLFATHFHEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~-~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      -.+..++ .+|+++++|||   .+    .+... +++.+..  |. +++.++|........+|+..+..|++...+.+
T Consensus       209 ~~l~~~Lr~~pd~ii~gE~---r~----~e~~~-~l~a~~~--g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~  276 (308)
T TIGR02788       209 DLLQSCLRMRPDRIILGEL---RG----DEAFD-FIRAVNT--GHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLD  276 (308)
T ss_pred             HHHHHHhcCCCCeEEEecc---CC----HHHHH-HHHHHhc--CCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCC
Confidence            2355567 99999999999   43    22333 3455553  55 56889998667777999998888877655543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.13  E-value=3.7e-10  Score=97.77  Aligned_cols=157  Identities=11%  Similarity=0.032  Sum_probs=92.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceec--CCCCCcc-hhhHHHhhcCcccc-cccCcCc
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVP--CDSATIS-VVDQIFTRVGAADS-QYRGIST   98 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~--~~~~~~~-~~~~~l~~~~l~~~-~~~~~~~   98 (185)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|.... ....+.+..  +...... .+++.+..-++... .--..++
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~  223 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD  223 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence            4589999 999999999999999999999999984321 111221111  1111111 11111111111100 1111345


Q ss_pred             cHHHHHHHHH-----HHHhC---CCCeEEEEe-----------------CCCCCCCcCChhHHHHH--HHHHHHh-cCCC
Q psy5297          99 FMMEMKETAT-----VIKKC---TENSLVIID-----------------ELGRGTSTFDGFGMACS--IARELAS-NRQP  150 (185)
Q Consensus        99 lS~g~~q~~~-----ia~~l---~~p~llllD-----------------EP~~g~~~~d~~~~~~~--il~~l~~-~~~~  150 (185)
                      -|.++|-+..     +|..+   ...=++++|                 || -++.++|+......  +++++.. +.|.
T Consensus       224 ~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~-P~~~G~dp~~~~~l~~ller~~~~~~Gs  302 (438)
T PRK07721        224 QPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEP-PTTKGYTPSVFAILPKLLERTGTNASGS  302 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCC-CccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence            5566666644     22223   344577788                 65 24455565544332  3466653 2475


Q ss_pred             -----eEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297         151 -----FTLFATHFHEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       151 -----~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                           ||++.+||.+ ..+||++..+.+|+++..++.+
T Consensus       303 IT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~~la  339 (438)
T PRK07721        303 ITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDRQLA  339 (438)
T ss_pred             eeeEEEEEEECCCCC-chhhhhEEEecCEEEEEeccHH
Confidence                 9999999943 4899999999999999887653

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.11  E-value=4.6e-10  Score=87.58  Aligned_cols=116  Identities=15%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             eEEEEccCCCcHHHHHHHH-HHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          38 FNLVTGPNMGGKSTYIRSI-GVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++|.||+||||||+++.+ +.+. ....+. +...++..+.. ......+. ..........|+.      .+.+++ .
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~-~~~~~~i~t~e~~~E~~~-~~~~~~i~-q~~vg~~~~~~~~------~i~~aLr~   73 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN-KNKTHHILTIEDPIEFVH-ESKRSLIN-QREVGLDTLSFEN------ALKAALRQ   73 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh-hcCCcEEEEEcCCccccc-cCccceee-ecccCCCccCHHH------HHHHHhcC
Confidence            6889999999999999987 3321 111111 22222211110 00000000 0001111223332      366777 8


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF  171 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l  171 (185)
                      +|+++++|||   .   |.+.+.. .++. .. .|..++.++|........+|+..+
T Consensus        74 ~pd~ii~gEi---r---d~e~~~~-~l~~-a~-~G~~v~~t~Ha~~~~~~~~Rl~~l  121 (198)
T cd01131          74 DPDVILVGEM---R---DLETIRL-ALTA-AE-TGHLVMSTLHTNSAAKTIDRIIDV  121 (198)
T ss_pred             CcCEEEEcCC---C---CHHHHHH-HHHH-HH-cCCEEEEEecCCcHHHHHhHHHhh
Confidence            9999999999   3   4444433 3333 34 589999999975555666777654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.07  E-value=1.7e-10  Score=81.37  Aligned_cols=34  Identities=18%  Similarity=0.046  Sum_probs=32.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ..++++++|++++|++++|+||+|||||||++++
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l   35 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALEL   35 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHh
Confidence            4689999999999999999999999999999997

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.06  E-value=2.6e-10  Score=108.18  Aligned_cols=80  Identities=9%  Similarity=-0.104  Sum_probs=61.7

Q ss_pred             cccCcCccHHHHHHHHHHHHhC-C--------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH-
Q psy5297          92 QYRGISTFMMEMKETATVIKKC-T--------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI-  161 (185)
Q Consensus        92 ~~~~~~~lS~g~~q~~~ia~~l-~--------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~-  161 (185)
                      ..+++.+|||||+++++|++++ .        +|+++|+||||.++|+.....+... +..+.+ .|.+|+||||..++ 
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~-l~~l~~-~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDA-LDALNA-SGKTIGVISHVEAMK 1020 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHH-CCCEEEEEecHHHHH
Confidence            4588999999999999999998 5        8999999999777766665555554 477776 69999999997444 


Q ss_pred             HHhhccccceee
Q psy5297         162 ALLSRVIPTFRN  173 (185)
Q Consensus       162 ~~~~d~~~~l~~  173 (185)
                      .++..++.|-..
T Consensus      1021 ~~i~~qi~V~k~ 1032 (1047)
T PRK10246       1021 ERIPVQIKVKKI 1032 (1047)
T ss_pred             HhccceEEEEEC
Confidence            445555555543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.05  E-value=2e-10  Score=109.20  Aligned_cols=79  Identities=11%  Similarity=0.077  Sum_probs=61.3

Q ss_pred             ccccCcCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          91 SQYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        91 ~~~~~~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      ..+.++..||+||+++++||+++     ..|+++|||||++++|+.....+...+ ..+.+  +.++|++||+.....+|
T Consensus      1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~-~~~~~--~~~~i~~sh~~~~~~~~ 1158 (1179)
T TIGR02168      1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLL-KEFSK--NTQFIVITHNKGTMEVA 1158 (1179)
T ss_pred             CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHH-HHhcc--CCEEEEEEcChhHHHHh
Confidence            35678899999999999999974     467999999997777666555555544 55544  47899999996667889


Q ss_pred             cccccee
Q psy5297         166 RVIPTFR  172 (185)
Q Consensus       166 d~~~~l~  172 (185)
                      |+++.+.
T Consensus      1159 d~~~~~~ 1165 (1179)
T TIGR02168      1159 DQLYGVT 1165 (1179)
T ss_pred             hhHeeee
Confidence            9998654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=99.03  E-value=8e-10  Score=107.07  Aligned_cols=77  Identities=14%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             ccccCcCccHHHHHH------HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH---hcCCCeEEEecCh-h
Q psy5297          91 SQYRGISTFMMEMKE------TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA---SNRQPFTLFATHF-H  159 (185)
Q Consensus        91 ~~~~~~~~lS~g~~q------~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~---~~~~~~vii~tH~-~  159 (185)
                      ......+.||+||+|      |++||+++ .+|++++|||||+|+|+.....+...+...+.   +..|.++|++||+ .
T Consensus      1192 ~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~ 1271 (1311)
T TIGR00606      1192 TALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271 (1311)
T ss_pred             eecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH
Confidence            334455799999999      99999999 99999999999777766665555544422221   1247899999999 7


Q ss_pred             HHHHhhcc
Q psy5297         160 EIALLSRV  167 (185)
Q Consensus       160 ~~~~~~d~  167 (185)
                      .+..+|..
T Consensus      1272 ~~~~~~~~ 1279 (1311)
T TIGR00606      1272 FVELLGRS 1279 (1311)
T ss_pred             HHHHHhhc
Confidence            77777643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.01  E-value=4.4e-10  Score=96.89  Aligned_cols=148  Identities=16%  Similarity=0.051  Sum_probs=88.6

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC--ceecCCCCCcc-hhhHHHhhcCcccc-cccCcCcc
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATIS-VVDQIFTRVGAADS-QYRGISTF   99 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g--~~v~~~~~~~~-~~~~~l~~~~l~~~-~~~~~~~l   99 (185)
                      .+++. .|.+.+|+.++|+|+||+|||||+++|.... ....+  .++.+...... .+...+..-++... .-...++.
T Consensus       145 raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~  222 (432)
T PRK06793        145 KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDE  222 (432)
T ss_pred             EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccC-CCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCC
Confidence            46666 4999999999999999999999999984321 11112  12333322211 12223333333221 23456788


Q ss_pred             HHHHHHHHHHHHhC--------CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297         100 MMEMKETATVIKKC--------TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF  171 (185)
Q Consensus       100 S~g~~q~~~ia~~l--------~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l  171 (185)
                      |.++|+|+..+.+.        .++-++++|+|   |...+...-....+..... .|.+..+.||.   .++++|.-..
T Consensus       223 s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl---Tr~a~A~reisl~~~e~p~-~G~~~~~~s~l---~~L~ERag~~  295 (432)
T PRK06793        223 SHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV---TRFADARRSVDIAVKELPI-GGKTLLMESYM---KKLLERSGKT  295 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch---HHHHHHHHHHHHHhcCCCC-CCeeeeeeccc---hhHHHHhccC
Confidence            99999998855542        57999999999   5555543222212222232 36777777874   4444555555


Q ss_pred             eeeeEEEEe
Q psy5297         172 RNVHESKYL  180 (185)
Q Consensus       172 ~~g~i~~~~  180 (185)
                      ..|.+...+
T Consensus       296 ~~GSiT~~~  304 (432)
T PRK06793        296 QKGSITGIY  304 (432)
T ss_pred             CCcceEEEE
Confidence            788876554

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.00  E-value=3.5e-10  Score=88.87  Aligned_cols=42  Identities=10%  Similarity=-0.029  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhC-CCCeEEEEeCCC-----CCCCcCChhHHHHHHHHHHH
Q psy5297         103 MKETATVIKKC-TENSLVIIDELG-----RGTSTFDGFGMACSIARELA  145 (185)
Q Consensus       103 ~~q~~~ia~~l-~~p~llllDEP~-----~g~~~~d~~~~~~~il~~l~  145 (185)
                      ++++..||+++ .+|+++++|||+     +++|+.....+.+.+ ..++
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~-~~~~  204 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL-QAAA  204 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH-HHHh
Confidence            78889999999 999999999997     776666655555543 4443

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.97  E-value=4.9e-09  Score=86.14  Aligned_cols=70  Identities=11%  Similarity=-0.004  Sum_probs=48.4

Q ss_pred             ccHHHHHHHHHHHHhC---CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccc
Q psy5297          98 TFMMEMKETATVIKKC---TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPT  170 (185)
Q Consensus        98 ~lS~g~~q~~~ia~~l---~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~  170 (185)
                      .||.|+.+.++++.++   ..|.++++|||-.++-|.-...+...+ ...++  ...|+++||. ..+..+-.+.++
T Consensus       270 eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~-~sAak--~sQv~VsTHS~rLl~~~e~~~v~  343 (373)
T COG4637         270 ELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELM-RSAAK--RSQVIVSTHSPRLLNAVEEHSVF  343 (373)
T ss_pred             hccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHH-HHhhc--cceEEEEeCCHHHHhhccccceE
Confidence            7999999999988887   578899999996666554444444433 44443  3489999998 444444444333

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.92  E-value=1.2e-08  Score=72.77  Aligned_cols=114  Identities=19%  Similarity=0.179  Sum_probs=61.7

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHHHHHhhC-ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG-CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g-~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      +..+.|+||+|+||||+++.+.......... .++..+...........     ............+++..+..+.++- 
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASGSGELRLRLALALARK   76 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence            6789999999999999999985432221101 12222221111111000     1122333445556666666666666 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHH-------HHHHhcCCCeEEEecC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIA-------RELASNRQPFTLFATH  157 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il-------~~l~~~~~~~vii~tH  157 (185)
                      ..|.++++||+   ....+.........       .......+..+|.++|
T Consensus        77 ~~~~viiiDei---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  124 (148)
T smart00382       77 LKPDVLILDEI---TSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN  124 (148)
T ss_pred             cCCCEEEEECC---cccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence            56799999999   44444333322110       1112224678888888

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.91  E-value=1.9e-09  Score=100.01  Aligned_cols=64  Identities=14%  Similarity=-0.043  Sum_probs=46.7

Q ss_pred             CCCeEEEEeCCCCCCC-cCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHH---------HhhccccceeeeeEEEE
Q psy5297         114 TENSLVIIDELGRGTS-TFDGFGMACSIARELASNRQPFTLFATHF-HEIA---------LLSRVIPTFRNVHESKY  179 (185)
Q Consensus       114 ~~p~llllDEP~~g~~-~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~---------~~~d~~~~l~~g~i~~~  179 (185)
                      .+|+++++|||..+++ +.....+.+ .++.+++ .|.+++++||+ .++.         +.|++.+++.++++...
T Consensus       651 ~~p~illlDE~~~~L~d~~~~~~i~~-~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~  725 (818)
T PRK13830        651 GAPSLIILDEAWLMLGHPVFRDKIRE-WLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREP  725 (818)
T ss_pred             CCCcEEEEECchhhcCCHHHHHHHHH-HHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccccc
Confidence            7999999999977763 333333333 3466655 68999999998 6654         57999999999987543

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.90  E-value=1.3e-09  Score=103.90  Aligned_cols=80  Identities=10%  Similarity=-0.049  Sum_probs=61.5

Q ss_pred             cccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297          92 QYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR  166 (185)
Q Consensus        92 ~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d  166 (185)
                      ..+++..|||||++++++|.++ .    .|++++||||++++|+.....+...+ ..+..  +..+|++||+......||
T Consensus      1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l-~~~~~--~~~~i~~t~~~~~~~~~d 1144 (1164)
T TIGR02169      1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLI-REKAG--EAQFIVVSLRSPMIEYAD 1144 (1164)
T ss_pred             CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHH-HHhcC--CCeEEEEECcHHHHHhcc
Confidence            4567789999999999999887 3    67999999997776666555554433 55543  577999999966778999


Q ss_pred             cccceeee
Q psy5297         167 VIPTFRNV  174 (185)
Q Consensus       167 ~~~~l~~g  174 (185)
                      +++.+...
T Consensus      1145 ~~~~~~~~ 1152 (1164)
T TIGR02169      1145 RAIGVTMR 1152 (1164)
T ss_pred             eeEeEEEe
Confidence            99877643

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.85  E-value=3.7e-09  Score=98.82  Aligned_cols=78  Identities=6%  Similarity=-0.066  Sum_probs=57.3

Q ss_pred             cCcCccHHHHHH------HHHHHHhC-CC-----C-eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC-eEEEecChh
Q psy5297          94 RGISTFMMEMKE------TATVIKKC-TE-----N-SLVIIDELGRGTSTFDGFGMACSIARELASNRQP-FTLFATHFH  159 (185)
Q Consensus        94 ~~~~~lS~g~~q------~~~ia~~l-~~-----p-~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~-~vii~tH~~  159 (185)
                      .++..||+|+++      |+++++++ ..     | +++|+|||++++|+.....+... +..+.. .|. +||++||+.
T Consensus       777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~-l~~~~~-~~~~qviiish~~  854 (880)
T PRK02224        777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDL-VESMRR-LGVEQIVVVSHDD  854 (880)
T ss_pred             cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHH-HHHHHh-cCCCeEEEEECCh
Confidence            457899999999      77787776 42     3 67999999666665554444443 356654 454 799999996


Q ss_pred             HHHHhhccccceee
Q psy5297         160 EIALLSRVIPTFRN  173 (185)
Q Consensus       160 ~~~~~~d~~~~l~~  173 (185)
                      .+...||+++.|..
T Consensus       855 ~~~~~ad~~~~~~~  868 (880)
T PRK02224        855 ELVGAADDLVRVEK  868 (880)
T ss_pred             HHHHhcCeeEEeec
Confidence            66678999999864

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.82  E-value=5.9e-09  Score=83.45  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=64.5

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHHHH-----H---------hhCceecCCCCC---cchhhHHHhhcCcccccccCcCc
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSVFL-----A---------QIGCFVPCDSAT---ISVVDQIFTRVGAADSQYRGIST   98 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~~~-----~---------~~g~~v~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~   98 (185)
                      |.+..|+||.|+|||||.-.++.-.-.     .         .+. |+..+...   ..++..+...++..+..++... 
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vl-yi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~-   78 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVV-YLSAEDPREEIHRRLEAILQHLEPDDAGDRLFI-   78 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEE-EEECCCCHHHHHHHHHHHHhhcCCcCcccceEE-
Confidence            567899999999999999888432110     0         111 33333211   1234445544443322221111 


Q ss_pred             cHHHHHHHHH---------------HHH-hC-CCCeEEEEeCCCCCC---CcCChhHHHHHH--HHHHHhcCCCeEEEec
Q psy5297          99 FMMEMKETAT---------------VIK-KC-TENSLVIIDELGRGT---STFDGFGMACSI--ARELASNRQPFTLFAT  156 (185)
Q Consensus        99 lS~g~~q~~~---------------ia~-~l-~~p~llllDEP~~g~---~~~d~~~~~~~i--l~~l~~~~~~~vii~t  156 (185)
                       ..|+.|++.               +.. .. .+|+++++| |++.+   +..|.......+  +..++++.++++++++
T Consensus        79 -~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~  156 (239)
T cd01125          79 -DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVH  156 (239)
T ss_pred             -eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence             123333322               222 22 799999999 75543   334544443322  3555554699999999


Q ss_pred             Ch
Q psy5297         157 HF  158 (185)
Q Consensus       157 H~  158 (185)
                      |.
T Consensus       157 H~  158 (239)
T cd01125         157 HV  158 (239)
T ss_pred             cc
Confidence            96

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.76  E-value=3.1e-08  Score=83.57  Aligned_cols=119  Identities=17%  Similarity=0.111  Sum_probs=62.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                      .++.++.|.||+||||||+|+.+..-......+. +...++..+.. ......+. .........++      .-.+.++
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~~~~i~-q~evg~~~~~~------~~~l~~~  191 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNKRSLIN-QREVGLDTLSF------ANALRAA  191 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCccceEE-ccccCCCCcCH------HHHHHHh
Confidence            4678999999999999999998843211111111 12222211110 00000000 00001111122      1235567


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP  169 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~  169 (185)
                      + .+|+++++||+   .   |.......+ +. .. .|..++.+.|-.......+|+.
T Consensus       192 lr~~pd~i~vgEi---r---d~~~~~~~l-~a-a~-tGh~v~~T~Ha~~~~~~~~Rl~  240 (343)
T TIGR01420       192 LREDPDVILIGEM---R---DLETVELAL-TA-AE-TGHLVFGTLHTNSAAQTIERII  240 (343)
T ss_pred             hccCCCEEEEeCC---C---CHHHHHHHH-HH-HH-cCCcEEEEEcCCCHHHHHHHHH
Confidence            7 99999999999   4   544443323 43 33 6999999999644444444543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.73  E-value=5.4e-09  Score=81.21  Aligned_cols=89  Identities=13%  Similarity=0.090  Sum_probs=56.1

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-----------------------CCcchhhHHHhhcCccccccc
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-----------------------ATISVVDQIFTRVGAADSQYR   94 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-----------------------~~~~~~~~~l~~~~l~~~~~~   94 (185)
                      +++|+||+|||||||.++|....-...+. +++.+.                       .......+.+..+...+..+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~   79 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVV-IISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEI   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeE-EEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEec
Confidence            58999999999999999995432000111 222221                       111123344555555556677


Q ss_pred             CcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q psy5297          95 GISTFMMEMKETATVIKKCTENSLVIIDELGRGTS  129 (185)
Q Consensus        95 ~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~  129 (185)
                      +..++|.+++++..+  .+..++++|+|+|+.+.+
T Consensus        80 p~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~  112 (198)
T cd02023          80 PVYDFKTHSRLKETV--TVYPADVIILEGILALYD  112 (198)
T ss_pred             cccccccCcccCCce--ecCCCCEEEEechhhccc
Confidence            788888888765444  237899999999966543

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.71  E-value=3.3e-09  Score=93.22  Aligned_cols=25  Identities=20%  Similarity=0.145  Sum_probs=22.8

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -+++|..+.|.||+|||||||...+
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qf   41 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQF   41 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence            4689999999999999999998876

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK00064 recF recombination protein F; Reviewed

Probab=98.71  E-value=2.9e-08  Score=84.25  Aligned_cols=76  Identities=14%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             cCccHHHHHHHHHHHHhC----------CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh
Q psy5297          96 ISTFMMEMKETATVIKKC----------TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL  164 (185)
Q Consensus        96 ~~~lS~g~~q~~~ia~~l----------~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~  164 (185)
                      ...+|.||+|++.+|..+          .+|+++|||||   ++.+|...... +++.+.+ .+..++++||+ ..+...
T Consensus       271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~---~s~LD~~~~~~-l~~~l~~-~~~qv~it~~~~~~~~~~  345 (361)
T PRK00064        271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDV---ASELDDGRRAA-LLERLKG-LGAQVFITTTDLEDLADL  345 (361)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccc---hhhhCHHHHHH-HHHHHhc-cCCEEEEEcCChhhhhhh
Confidence            356899999999999764          58999999999   55566554444 3355543 35688999997 555555


Q ss_pred             h--ccccceeeeeE
Q psy5297         165 S--RVIPTFRNVHE  176 (185)
Q Consensus       165 ~--d~~~~l~~g~i  176 (185)
                      +  ++++.|++|++
T Consensus       346 ~~~~~i~~v~~G~i  359 (361)
T PRK00064        346 LENAKIFHVEQGKI  359 (361)
T ss_pred             hccCcEEEEeCCEE
Confidence            4  47888999987

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.71  E-value=4.7e-08  Score=83.73  Aligned_cols=145  Identities=15%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhh---C-ceecCCC----------CCcch--hhHHHhhcCcc-cccc
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI---G-CFVPCDS----------ATISV--VDQIFTRVGAA-DSQY   93 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~---g-~~v~~~~----------~~~~~--~~~~l~~~~l~-~~~~   93 (185)
                      +-|++| +++|+|.+--||||||+.|-.=.+ .|+   | -||-..+          ....-  +.-.+..+... +-.+
T Consensus       240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVY-nHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~  317 (448)
T PF09818_consen  240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVY-NHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTC  317 (448)
T ss_pred             EeeCCc-EEEEECCCCccHHHHHHHHHhccc-CCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCc
Confidence            346788 999999999999999999922111 111   0 0111111          00000  11112222111 1112


Q ss_pred             cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--------------HHHHHhcCCCeEEEecC-
Q psy5297          94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--------------ARELASNRQPFTLFATH-  157 (185)
Q Consensus        94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--------------l~~l~~~~~~~vii~tH-  157 (185)
                      -.-.+-||-+-|-..|..++ ...++||+||=++.|+.+-++...+.+              ++.+.++.|.+.|+++= 
T Consensus       318 FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg  397 (448)
T PF09818_consen  318 FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG  397 (448)
T ss_pred             ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc
Confidence            22345689999999999999 999999999999999998766654433              23443446876666665 


Q ss_pred             hhHHHHhhccccceeeeeEE
Q psy5297         158 FHEIALLSRVIPTFRNVHES  177 (185)
Q Consensus       158 ~~~~~~~~d~~~~l~~g~i~  177 (185)
                      ..+....||+++.|++.+..
T Consensus       398 sgdy~~vAD~Vi~Md~Y~~~  417 (448)
T PF09818_consen  398 SGDYFDVADRVIMMDEYRPK  417 (448)
T ss_pred             chhhHhhCCEEEEecCccch
Confidence            48889999999999998753

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.69  E-value=2.2e-08  Score=63.68  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             EEEeeCC-ceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          29 VYFKSGE-VSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        29 isl~i~~-g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      -.+++.+ |+++.|+|||||||||+|..|-.+
T Consensus        15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             eEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4444543 679999999999999999998543

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.69  E-value=2.2e-08  Score=77.26  Aligned_cols=117  Identities=12%  Similarity=0.086  Sum_probs=60.9

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHH
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKET  106 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~  106 (185)
                      .=+.+.+++|+.++|+||||||||||+++|.... ....+.....++..+.....  ...++..  .......+....-.
T Consensus        16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~~~~~~i~ied~~E~~~~~~--~~~~~~~--~~~~~~~~~~~~~~   90 (186)
T cd01130          16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFI-PPDERIITIEDTAELQLPHP--NWVRLVT--RPGNVEGSGEVTMA   90 (186)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEECCccccCCCCC--CEEEEEE--ecCCCCCCCccCHH
Confidence            3345667899999999999999999999984321 12223222233222211000  0011100  00000011111112


Q ss_pred             HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe-EEEecCh
Q psy5297         107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF-TLFATHF  158 (185)
Q Consensus       107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~-vii~tH~  158 (185)
                      -.+..++ .+|+.++++|.   -   +.+. .. +++.. . .|.. ++.+-|-
T Consensus        91 ~~l~~~lR~~pd~i~igEi---r---~~ea-~~-~~~a~-~-tGh~g~~~T~Ha  134 (186)
T cd01130          91 DLLRSALRMRPDRIIVGEV---R---GGEA-LD-LLQAM-N-TGHPGGMTTIHA  134 (186)
T ss_pred             HHHHHHhccCCCEEEEEcc---C---cHHH-HH-HHHHH-h-cCCCCceeeecC
Confidence            2344456 89999999999   3   3332 33 33544 3 5877 7888884

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.69  E-value=2.3e-07  Score=78.90  Aligned_cols=101  Identities=16%  Similarity=0.191  Sum_probs=64.4

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH----hhCceecCCCCCcchhhHH---HhhcCcccccccCc
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIGCFVPCDSATISVVDQI---FTRVGAADSQYRGI   96 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~----~~g~~v~~~~~~~~~~~~~---l~~~~l~~~~~~~~   96 (185)
                      .++++.++.+++|++++++||||+||||++..|+.-....    .++ ++..+.......+.+   .+.+++.-..-+..
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~  203 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG  203 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCCc
Confidence            3667778888999999999999999999999996533221    344 666665544433333   34455433222333


Q ss_pred             CccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChh
Q psy5297          97 STFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGF  134 (185)
Q Consensus        97 ~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~  134 (185)
                      .++..      .+ ..+.+.+++|+|+|  |.++.|..
T Consensus       204 ~~l~~------~l-~~l~~~DlVLIDTa--G~~~~d~~  232 (374)
T PRK14722        204 GDLQL------AL-AELRNKHMVLIDTI--GMSQRDRT  232 (374)
T ss_pred             ccHHH------HH-HHhcCCCEEEEcCC--CCCcccHH
Confidence            33422      12 22467899999999  56666644

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.69  E-value=1.2e-07  Score=82.99  Aligned_cols=55  Identities=15%  Similarity=0.159  Sum_probs=40.6

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH----hhCceecCCCCCcchhh
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIGCFVPCDSATISVVD   80 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~----~~g~~v~~~~~~~~~~~   80 (185)
                      ++++.++.+++|++++++||||+||||++..|.......    .++ +++++.......+
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~-LI~~Dt~RigA~E  303 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA-LLTTDSYRIGGHE  303 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE-EEeCCccchhHHH
Confidence            456677777889999999999999999999996544322    345 7888775544433

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.69  E-value=7.7e-09  Score=89.76  Aligned_cols=32  Identities=19%  Similarity=0.136  Sum_probs=30.7

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIR   54 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk   54 (185)
                      ..+|++||+++++||+++|+||||||||||||
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence            35899999999999999999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=98.64  E-value=7.5e-08  Score=81.72  Aligned_cols=146  Identities=16%  Similarity=0.079  Sum_probs=94.7

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHHHHHHH------------HhhCceecCCC-CCcc--hhhHHHhhc-Cccccccc
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------AQIGCFVPCDS-ATIS--VVDQIFTRV-GAADSQYR   94 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~------------~~~g~~v~~~~-~~~~--~~~~~l~~~-~l~~~~~~   94 (185)
                      +-|++| ++.|+|+|--|||||+..|-.=.+.            ....+++-... ..++  -+...+..+ |..+..+-
T Consensus       238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipGDGRE~vVTd~~lakaeae~gr~vsg~D~SlFi~~LPggkdTp~f  316 (554)
T COG3044         238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERVVTDVKLAKAEAEEGRCVSGLDLSLFINHLPGGKDTPDF  316 (554)
T ss_pred             cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCCCCceEEEehhhhhhhhcccceeeeccchHHHHHhCCCCCCCccc
Confidence            456788 9999999999999999999221110            01111222221 0000  111222222 23333333


Q ss_pred             CcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH---------HHHHHhcCC--CeEEEecCh-hHH
Q psy5297          95 GISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI---------ARELASNRQ--PFTLFATHF-HEI  161 (185)
Q Consensus        95 ~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i---------l~~l~~~~~--~~vii~tH~-~~~  161 (185)
                      --..-||-+.+-..|=+++ ...+.+|+||=++.++.+-...+...+         .....+..|  .++|++|-- .++
T Consensus       317 vtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddl  396 (554)
T COG3044         317 VTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDL  396 (554)
T ss_pred             ccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhh
Confidence            4457799999999999999 999999999999999988766554332         122222223  778888775 889


Q ss_pred             HHhhccccceeeeeEE
Q psy5297         162 ALLSRVIPTFRNVHES  177 (185)
Q Consensus       162 ~~~~d~~~~l~~g~i~  177 (185)
                      .+.+||+++|++.+-.
T Consensus       397 la~aDRaIvMeDhrpk  412 (554)
T COG3044         397 LAVADRAIVMEDHRPK  412 (554)
T ss_pred             hhhcceEEEecccCcc
Confidence            9999999999998753

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.60  E-value=1.1e-07  Score=89.35  Aligned_cols=77  Identities=19%  Similarity=0.142  Sum_probs=61.6

Q ss_pred             ccCcCccHHHHHHHHHHHHh------C-CC--CeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecChhHH
Q psy5297          93 YRGISTFMMEMKETATVIKK------C-TE--NSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHFHEI  161 (185)
Q Consensus        93 ~~~~~~lS~g~~q~~~ia~~------l-~~--p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~~~~  161 (185)
                      -+++++||||++-.++||-+      + .+  -++++||||   |..+|...+..++  +..+.. .+.+|+||||+.++
T Consensus       810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEp---f~~LD~e~l~~l~~~l~~i~~-~~~qiiIISH~eel  885 (908)
T COG0419         810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEP---FGTLDEERLEKLAEILEELLS-DGRQIIIISHVEEL  885 (908)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCC---CCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeChHHH
Confidence            47899999999998876654      4 45  699999999   6667766665543  567766 48999999999999


Q ss_pred             HHhhccccceee
Q psy5297         162 ALLSRVIPTFRN  173 (185)
Q Consensus       162 ~~~~d~~~~l~~  173 (185)
                      .+.+|.++.+..
T Consensus       886 ~e~~~~~i~V~k  897 (908)
T COG0419         886 KERADVRIRVKK  897 (908)
T ss_pred             HHhCCeEEEEEe
Confidence            999999888764

>TIGR00416 sms DNA repair protein RadA

Probab=98.58  E-value=2.9e-07  Score=80.36  Aligned_cols=138  Identities=15%  Similarity=0.108  Sum_probs=75.0

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      -+.+|+++.|.|++|+|||||+..+..-.... .-..|+.-+.. ...+..-..++++....-....+.+..     .+.
T Consensus        90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e~~~~-----~I~  163 (454)
T TIGR00416        90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSETNWE-----QIC  163 (454)
T ss_pred             CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCCCCHH-----HHH
Confidence            47899999999999999999999884322211 11226554332 111222223444421100001111111     222


Q ss_pred             HhC--CCCeEEEEeCCCCCCC------cCChhHHHHHH--HHHHHhcCCCeEEEecCh-hH--------HHHhhccccce
Q psy5297         111 KKC--TENSLVIIDELGRGTS------TFDGFGMACSI--ARELASNRQPFTLFATHF-HE--------IALLSRVIPTF  171 (185)
Q Consensus       111 ~~l--~~p~llllDEP~~g~~------~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~--------~~~~~d~~~~l  171 (185)
                      ..+  .+|+++++|....=..      +-+.....+.+  +..++++.|.|+++++|. .+        +..++|.++.|
T Consensus       164 ~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~L  243 (454)
T TIGR00416       164 ANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYF  243 (454)
T ss_pred             HHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEE
Confidence            333  6899999998743111      11122232221  344444479999999995 33        45678888887


Q ss_pred             eeee
Q psy5297         172 RNVH  175 (185)
Q Consensus       172 ~~g~  175 (185)
                      +.++
T Consensus       244 e~~~  247 (454)
T TIGR00416       244 EGDR  247 (454)
T ss_pred             eccC
Confidence            7543

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK13764 ATPase; Provisional

Probab=98.55  E-value=4.7e-07  Score=81.20  Aligned_cols=120  Identities=15%  Similarity=0.076  Sum_probs=69.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCce--ecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF--VPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~--v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                      .++.-+.+.||.||||||+++.+....-  ..+..  ...++..+.....      .... .    .+.+.+.....  .
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~--~~~riV~TiEDp~El~~~~~------i~q~-~----~~~~~~~~~~~--~  319 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAEFYA--DMGKIVKTMESPRDLQVPPE------ITQY-S----KLEGSMEETAD--I  319 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHHHh--hCCCEEEEECCCccccCCCc------ceEE-e----eccccHHHHHH--H
Confidence            4456689999999999999999864322  12211  1222222211110      0100 0    01111111111  1


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC---------------h-hHHHHhhccccceeee
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH---------------F-HEIALLSRVIPTFRNV  174 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH---------------~-~~~~~~~d~~~~l~~g  174 (185)
                      +| .+|+++++||.      -|.+.+..  +..++. .|..++-+-|               + ..+...+|+++++++|
T Consensus       320 lLR~rPD~IivGEi------Rd~Et~~~--~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G  390 (602)
T PRK13764        320 LLLVRPDYTIYDEM------RKTEDFKI--FADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDG  390 (602)
T ss_pred             HHhhCCCEEEECCC------CCHHHHHH--HHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCC
Confidence            25 89999999999      44343322  234443 4777888889               5 4556689999999999


Q ss_pred             eEE
Q psy5297         175 HES  177 (185)
Q Consensus       175 ~i~  177 (185)
                      ++.
T Consensus       391 ~I~  393 (602)
T PRK13764        391 EVS  393 (602)
T ss_pred             EEE
Confidence            994

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.55  E-value=1.3e-07  Score=82.09  Aligned_cols=157  Identities=10%  Similarity=0.046  Sum_probs=84.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCc--eecCCCCCcc-hhhHHHhhcCcccc-cccCcCc
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC--FVPCDSATIS-VVDQIFTRVGAADS-QYRGIST   98 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~--~v~~~~~~~~-~~~~~l~~~~l~~~-~~~~~~~   98 (185)
                      ..+++++ |.+.+|+.++|+|+||+|||||+++|.... ....+.  .+-....... ..++.+..-++... .-...++
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d  228 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-EADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD  228 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence            4588999 999999999999999999999999984321 111110  1111111111 11122211111110 1111223


Q ss_pred             cHHHHHHHHH-----HHHhC---CCCeEEEEeCCCC----------------CCCcCChhHHH--HHHHHHHHhcCCC--
Q psy5297          99 FMMEMKETAT-----VIKKC---TENSLVIIDELGR----------------GTSTFDGFGMA--CSIARELASNRQP--  150 (185)
Q Consensus        99 lS~g~~q~~~-----ia~~l---~~p~llllDEP~~----------------g~~~~d~~~~~--~~il~~l~~~~~~--  150 (185)
                      -|.++|.+..     +|..+   ...-++++|--|+                +..+.++....  ..++++... .+.  
T Consensus       229 ~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~-~~~GS  307 (440)
T TIGR01026       229 QSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA-SGKGS  307 (440)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc-CCCCe
Confidence            3445555533     22222   2344566664332                22334433222  223455554 355  


Q ss_pred             -----eEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297         151 -----FTLFATHFHEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       151 -----~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                           ||++.+||. ...++|++..+.+|+++...+.+
T Consensus       308 IT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la  344 (440)
T TIGR01026       308 ITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALA  344 (440)
T ss_pred             eeEEEEEEccCcCC-CcchhhhhccccceEEEEecchh
Confidence                 777888874 35588999999999998876543

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.54  E-value=7.2e-07  Score=70.71  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=23.4

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+++|++++|.||+|+|||||...+.
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~   41 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFA   41 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHH
Confidence            57899999999999999999988763

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00152 dephospho-CoA kinase

Probab=98.52  E-value=5.4e-08  Score=75.12  Aligned_cols=121  Identities=12%  Similarity=0.059  Sum_probs=76.6

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCC-------CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDS-------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i  109 (185)
                      +++|+|.-||||||+.+.+..-.     +. ++..+.       ..-+.+.++.+.||- +..+.      .|+.+|..|
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~-~i~~~------~g~idr~~L   68 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKIAHQVVEKGSPAYEKIVDHFGA-QILNE------DGELDRKAL   68 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHHHHHHHhcCChHHHHHHHHHCH-HHhCC------CCCCCHHHH
Confidence            48999999999999999884321     11 111211       112345566666762 11111      377889999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hH--HHHhhccccceeee
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HE--IALLSRVIPTFRNV  174 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~--~~~~~d~~~~l~~g  174 (185)
                      +..+ .+|+.+..+|  +.+.|.-...+.+.+ ....+ .+.+|++.+|. .+  +...||+++++..+
T Consensus        69 ~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i-~~~~~-~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        69 GERVFNDPEELKWLN--NLLHPLIREWMKKLL-AQFQS-KLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             HHHHhCCHHHHHHHH--HhhCHHHHHHHHHHH-HHhhc-CCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            9998 9999887776  345555444443333 33333 35789999996 43  67789999887653

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK04296 thymidine kinase; Provisional

Probab=98.52  E-value=1.5e-06  Score=67.35  Aligned_cols=124  Identities=14%  Similarity=0.059  Sum_probs=68.0

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCC--CCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCD--SATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                      |.++.++||.|+||||++.-+..-... .... +++..  ..... ...+.+++|+.-.. ..........+ .+  .. 
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v-~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~-~~--~~-   74 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKV-LVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFE-LI--EE-   74 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeE-EEEecccccccc-CCcEecCCCCcccc-eEeCChHHHHH-HH--Hh-
Confidence            789999999999999988666322211 1122 22211  11111 23345555542111 01111111111 11  11 


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-----------hHHHHhhcccccee
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-----------HEIALLSRVIPTFR  172 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-----------~~~~~~~d~~~~l~  172 (185)
                      . .+++++++||-    ..++...+.+ +++.++. .|.+|+++.++           ..+..+||.+..|+
T Consensus        75 ~~~~~dvviIDEa----q~l~~~~v~~-l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~  140 (190)
T PRK04296         75 EGEKIDCVLIDEA----QFLDKEQVVQ-LAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK  140 (190)
T ss_pred             hCCCCCEEEEEcc----ccCCHHHHHH-HHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence            3 57899999998    2244343444 3466665 69999999887           35667888887664

>PLN03210 Resistant to P

Probab=98.51  E-value=2.5e-07  Score=89.02  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=25.5

Q ss_pred             EEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          29 VYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        29 isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++.+++++++|+|++|+|||||++.+
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l  227 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARAL  227 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHH
Confidence            4567788999999999999999999999

syringae 6; Provisional

>PRK09183 transposase/IS protein; Provisional

Probab=98.50  E-value=5e-07  Score=73.40  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      .|.+++| +++|+.++|+||+|+|||+|..+||...
T Consensus        92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183         92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            4667788 8999999999999999999999997643

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.46  E-value=1.7e-06  Score=73.70  Aligned_cols=136  Identities=15%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      -+.+|+++.|.|++|+|||||+..+....... ....|+..+.. ...+.....++++....-.........     .+.
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~~le-----~I~  151 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAETNLE-----DIL  151 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccCcHH-----HHH
Confidence            36789999999999999999999884322221 12225544321 222222334555432100001111111     122


Q ss_pred             HhC--CCCeEEEEeCCCCC----CC--cCChhHHHHHH--HHHHHhcCCCeEEEecCh-hH--------HHHhhccccce
Q psy5297         111 KKC--TENSLVIIDELGRG----TS--TFDGFGMACSI--ARELASNRQPFTLFATHF-HE--------IALLSRVIPTF  171 (185)
Q Consensus       111 ~~l--~~p~llllDEP~~g----~~--~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~--------~~~~~d~~~~l  171 (185)
                      ..+  .+|+++++|+...=    .+  +-....+.+.+  +..+.++.+.+++++.|- .+        +..++|.++.+
T Consensus       152 ~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~l  231 (372)
T cd01121         152 ASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYF  231 (372)
T ss_pred             HHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEE
Confidence            222  68999999996221    11  11122222222  344444479999999994 32        45677777776


Q ss_pred             ee
Q psy5297         172 RN  173 (185)
Q Consensus       172 ~~  173 (185)
                      +.
T Consensus       232 e~  233 (372)
T cd01121         232 EG  233 (372)
T ss_pred             Ec
Confidence            53

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.44  E-value=3.7e-06  Score=72.64  Aligned_cols=93  Identities=18%  Similarity=0.248  Sum_probs=54.8

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHHH---hhCceecCCCCCcchhhHH---HhhcCcccccccCcCccHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIGCFVPCDSATISVVDQI---FTRVGAADSQYRGISTFMMEMKET  106 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~---~~g~~v~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~lS~g~~q~  106 (185)
                      +++|++++++||||+||||+++.|....+..   ..+.++..+.......+++   .+.+|+.-..-....++      +
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl------~  261 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL------Q  261 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH------H
Confidence            4689999999999999999999995433221   1223666666554444432   33444432111111111      1


Q ss_pred             HHHHHhCCCCeEEEEeCCCCCCCcCChh
Q psy5297         107 ATVIKKCTENSLVIIDELGRGTSTFDGF  134 (185)
Q Consensus       107 ~~ia~~l~~p~llllDEP~~g~~~~d~~  134 (185)
                      ..+ ..+.+.++++.|.+  |....+..
T Consensus       262 ~al-~~l~~~d~VLIDTa--Grsqrd~~  286 (420)
T PRK14721        262 LML-HELRGKHMVLIDTV--GMSQRDQM  286 (420)
T ss_pred             HHH-HHhcCCCEEEecCC--CCCcchHH
Confidence            122 22478899999975  77777644

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.43  E-value=3.3e-06  Score=68.49  Aligned_cols=36  Identities=17%  Similarity=0.158  Sum_probs=31.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      -..|+++.-.+.+|++++|.||.|+|||||+..+..
T Consensus        17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~   52 (271)
T cd01122          17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL   52 (271)
T ss_pred             cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346888877899999999999999999999998843

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=98.41  E-value=1.3e-06  Score=69.10  Aligned_cols=138  Identities=14%  Similarity=0.039  Sum_probs=70.1

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCcc--ccc-------ccCcCccHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAA--DSQ-------YRGISTFMM  101 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~-------~~~~~~lS~  101 (185)
                      .+++|+++.|.|+.|+|||+|.-.+..-... ...+.|+.-+.. ...+.+.+..++.+  +..       +..+..+..
T Consensus        12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   90 (224)
T TIGR03880        12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER-EERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKT   90 (224)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHh
Confidence            4678999999999999999997766321111 222225444332 11122222333321  111       111111211


Q ss_pred             HHHHHHH-HHHhC--CCCeEEEEeCCCCCCCc--CChhHHHH---HHHHHHHhcCCCeEEEecChh---------H-HHH
Q psy5297         102 EMKETAT-VIKKC--TENSLVIIDELGRGTST--FDGFGMAC---SIARELASNRQPFTLFATHFH---------E-IAL  163 (185)
Q Consensus       102 g~~q~~~-ia~~l--~~p~llllDEP~~g~~~--~d~~~~~~---~il~~l~~~~~~~vii~tH~~---------~-~~~  163 (185)
                      -..+... +...+  ..++++++| +.+.+.+  .+.....+   .+++.+++ .+.|+++++|..         . +..
T Consensus        91 ~~~~l~~~~~~~i~~~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~~~~~~~~~~~~~~~  168 (224)
T TIGR03880        91 SLNRIKNELPILIKELGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEADKTNVFASKYGLIEY  168 (224)
T ss_pred             hHHHHHHHHHHHHHHhCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEcccCCCCCccCCCceEE
Confidence            1111111 11222  578899999 5333311  12221222   23466665 699999999941         2 456


Q ss_pred             hhcccccee
Q psy5297         164 LSRVIPTFR  172 (185)
Q Consensus       164 ~~d~~~~l~  172 (185)
                      +||.++.++
T Consensus       169 l~D~vI~L~  177 (224)
T TIGR03880       169 LADGVIILK  177 (224)
T ss_pred             EEeEEEEEe
Confidence            788888875

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.40  E-value=3.4e-06  Score=78.94  Aligned_cols=53  Identities=15%  Similarity=0.054  Sum_probs=36.3

Q ss_pred             HHHhC-CCCeEEEEeCCCCCCC-cCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHH
Q psy5297         109 VIKKC-TENSLVIIDELGRGTS-TFDGFGMACSIARELASNRQPFTLFATHF-HEIAL  163 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~-~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~  163 (185)
                      +.+++ .+|+++++|||..+++ +.....+.. .++.+++ .|.+++++||+ .++..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~-~lk~~RK-~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIRE-WLKVLRK-ANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHH-HHHHHHh-cCCEEEEEeCCHHHHhh
Confidence            45567 8999999999977763 222222333 3466665 68899999998 66654

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.40  E-value=1.7e-06  Score=62.08  Aligned_cols=25  Identities=32%  Similarity=0.343  Sum_probs=22.0

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+..+.|+||.|+||||+++.+..-
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4778999999999999999999653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.40  E-value=6.9e-06  Score=67.14  Aligned_cols=108  Identities=20%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             eeeceEEEeeCC-------ceeEEEEccCCCcHHHHHHHHHHHHHH-H-hhCceecCCCCCcchhhHHHh---hcCcccc
Q psy5297          24 YIPNDVYFKSGE-------VSFNLVTGPNMGGKSTYIRSIGVSVFL-A-QIGCFVPCDSATISVVDQIFT---RVGAADS   91 (185)
Q Consensus        24 ~il~~isl~i~~-------g~~~~l~G~NGsGKSTLlk~iG~i~~~-~-~~g~~v~~~~~~~~~~~~~l~---~~~l~~~   91 (185)
                      .+++++++.++.       |++++++||||+||||+++.|...... . .++ ++..+......+.++..   ..++.-.
T Consensus        56 ~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~-~i~~D~~ri~~~~ql~~~~~~~~~~~~  134 (270)
T PRK06731         56 YILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG-FITTDHSRIGTVQQLQDYVKTIGFEVI  134 (270)
T ss_pred             HHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE-EEecCCCCHHHHHHHHHHhhhcCceEE
Confidence            468888888864       489999999999999999999654322 1 233 66666544444444332   2332211


Q ss_pred             cccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297          92 QYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus        92 ~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                      ....+..+    .+.+.-+....+.+++|+|-|.+  .+.+...+.+
T Consensus       135 ~~~~~~~l----~~~l~~l~~~~~~D~ViIDt~Gr--~~~~~~~l~e  175 (270)
T PRK06731        135 AVRDEAAM----TRALTYFKEEARVDYILIDTAGK--NYRASETVEE  175 (270)
T ss_pred             ecCCHHHH----HHHHHHHHhcCCCCEEEEECCCC--CcCCHHHHHH
Confidence            11111111    11111111124689999999944  4455444444

>cd01394 radB RadB

Probab=98.38  E-value=2.8e-06  Score=66.83  Aligned_cols=141  Identities=14%  Similarity=0.083  Sum_probs=72.2

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcC---cccccccCcCccHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVG---AADSQYRGISTFMMEMKETA  107 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~---l~~~~~~~~~~lS~g~~q~~  107 (185)
                      -+++|+++.|.|++|+|||||.-.+..-... ..-..|+..+......+.++.....   .....-..+.++. .+...+
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   93 (218)
T cd01394          15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFN-EQGRAI   93 (218)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHH-HHHHHH
Confidence            4688999999999999999998887332211 1122255443322233333332210   0111111122332 222222


Q ss_pred             H-HHHhC-CCCeEEEEeCCCCCCCc-CCh--------hHHHHHH--HHHHHhcCCCeEEEecCh-h-------------H
Q psy5297         108 T-VIKKC-TENSLVIIDELGRGTST-FDG--------FGMACSI--ARELASNRQPFTLFATHF-H-------------E  160 (185)
Q Consensus       108 ~-ia~~l-~~p~llllDEP~~g~~~-~d~--------~~~~~~i--l~~l~~~~~~~vii~tH~-~-------------~  160 (185)
                      . +...+ .+++++++|-..+=... .+.        ..+.+.+  +..++++.++++|+++|- .             .
T Consensus        94 ~~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~  173 (218)
T cd01394          94 QETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHT  173 (218)
T ss_pred             HHHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcc
Confidence            2 33334 56999999988332110 010        1222222  345555579999999994 2             2


Q ss_pred             HHHhhccccceee
Q psy5297         161 IALLSRVIPTFRN  173 (185)
Q Consensus       161 ~~~~~d~~~~l~~  173 (185)
                      +..++|.++.|+.
T Consensus       174 ~~~~~d~~i~l~~  186 (218)
T cd01394         174 LEHWSKVILRLEK  186 (218)
T ss_pred             hhcceeEEEEEEE
Confidence            3445666666664

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.36  E-value=2.5e-06  Score=72.42  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=60.8

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhC--ceecCCCCCcchhhHHHhhcCc--ccccccCcCccHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIG--CFVPCDSATISVVDQIFTRVGA--ADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g--~~v~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~g~~q~~~  108 (185)
                      .++..++|+|||||||||+|+++-..... ...+  .+...++..+. .+.+-.....  .....+...+|..+.+    
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~-~~~~~~~~~~v~Q~~v~~~~~~~~~~l~----  206 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV-YDEIETISASVCQSEIPRHLNNFAAGVR----  206 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe-ccccccccceeeeeeccccccCHHHHHH----
Confidence            47899999999999999999998432211 0111  12222332221 1111000000  0001112234444443    


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE  160 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~  160 (185)
                        .++ .+|+++++.|.      -|.+.....+ +.. . .|..++-+-|-..
T Consensus       207 --~aLR~~Pd~i~vGEi------Rd~et~~~al-~aa-~-tGh~v~tTlHa~~  248 (358)
T TIGR02524       207 --NALRRKPHAILVGEA------RDAETISAAL-EAA-L-TGHPVYTTLHSSG  248 (358)
T ss_pred             --HHhccCCCEEeeeee------CCHHHHHHHH-HHH-H-cCCcEEEeeccCC
Confidence              366 89999999998      6655554443 433 3 5888888888433

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.36  E-value=4.8e-06  Score=77.52  Aligned_cols=49  Identities=16%  Similarity=0.080  Sum_probs=32.2

Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHH
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIAL  163 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~  163 (185)
                      .+|.++++|||...++..........+++.+++ .|..++++||+ .++..
T Consensus       641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~  690 (800)
T PRK13898        641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVEDASK  690 (800)
T ss_pred             CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHh
Confidence            789999999996666521112222223466655 68899999998 55443

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.35  E-value=5e-07  Score=69.28  Aligned_cols=33  Identities=30%  Similarity=0.508  Sum_probs=25.9

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      .++++++.+ .+++|+||||+||||++.+|..+.
T Consensus        11 ~~~~i~f~~-g~~vi~G~Ng~GKStil~ai~~~L   43 (202)
T PF13476_consen   11 KDLEIDFSP-GLNVIYGPNGSGKSTILEAIRYAL   43 (202)
T ss_dssp             EEEEEE--S-EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cceEEEcCC-CcEEEECCCCCCHHHHHHHHHHHH
Confidence            667777766 499999999999999999995443

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.34  E-value=4.2e-06  Score=73.01  Aligned_cols=135  Identities=16%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      .+.+|+++.|.|+.|+|||||+..+..-... .....|+..+.. ...+....++++.+...-......+.  .   .+.
T Consensus        76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~~~~~l~~~~e~~l--~---~i~  149 (446)
T PRK11823         76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGLPSDNLYLLAETNL--E---AIL  149 (446)
T ss_pred             CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCCChhcEEEeCCCCH--H---HHH
Confidence            4678999999999999999999998442221 112236554332 22222224445542110000011111  1   222


Q ss_pred             HhC--CCCeEEEEeCCCCCCC------cCChhHHHHHH--HHHHHhcCCCeEEEecCh-hH--------HHHhhccccce
Q psy5297         111 KKC--TENSLVIIDELGRGTS------TFDGFGMACSI--ARELASNRQPFTLFATHF-HE--------IALLSRVIPTF  171 (185)
Q Consensus       111 ~~l--~~p~llllDEP~~g~~------~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~--------~~~~~d~~~~l  171 (185)
                      ..+  .+|+++++|+..+-..      +-+...+.+.+  +..+.++.+.++++++|. .+        +..++|.++.+
T Consensus       150 ~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~l  229 (446)
T PRK11823        150 ATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYF  229 (446)
T ss_pred             HHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEE
Confidence            233  6899999999843221      11122222221  244444479999999994 22        56677888777


Q ss_pred             e
Q psy5297         172 R  172 (185)
Q Consensus       172 ~  172 (185)
                      +
T Consensus       230 e  230 (446)
T PRK11823        230 E  230 (446)
T ss_pred             E
Confidence            5

>TIGR00235 udk uridine kinase

Probab=98.31  E-value=6.2e-07  Score=70.25  Aligned_cols=40  Identities=20%  Similarity=0.099  Sum_probs=28.8

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS   73 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~   73 (185)
                      -++|++++|.||||||||||++.|....-...++ +++++.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~-~i~~D~   42 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIV-IISQDN   42 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCe-Eecccc
Confidence            3689999999999999999999994322112233 555554

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00611 recf recF protein

Probab=98.27  E-value=1.3e-06  Score=74.33  Aligned_cols=56  Identities=13%  Similarity=0.086  Sum_probs=43.9

Q ss_pred             ccHHHHHHHHHHHHhC-C---------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          98 TFMMEMKETATVIKKC-T---------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        98 ~lS~g~~q~~~ia~~l-~---------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      .+|.||++++.+|..+ .         +|+++|||||   ++.+|...... +++.+.+ .|.+++++||+
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~---~seLD~~~r~~-l~~~l~~-~~~qv~it~~~  340 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDV---ASELDDQRRRL-LAELLQS-LGVQVFVTAIS  340 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCc---hhccCHHHHHH-HHHHHhh-cCCEEEEEecC
Confidence            4799999999999887 6         8999999999   55566554444 4466654 36799999997

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00767 rho transcription termination factor Rho

Probab=98.26  E-value=3.5e-06  Score=72.10  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=29.6

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      |+.+.+.+|+.++|+||.|+|||||++.|..
T Consensus       160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~  190 (415)
T TIGR00767       160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQ  190 (415)
T ss_pred             eeEEEeCCCCEEEEECCCCCChhHHHHHHHH
Confidence            9999999999999999999999999999854

Members of this family differ in the specificity of RNA binding.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
2o8b_A	934	Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M		3e-59
2o8e_A	934	Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR,		3e-59
1nne_A	765	Crystal Structure Of The Muts-adpbef3-dna Complex L		4e-38
3thw_B	918	Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo		1e-37
1wbd_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		3e-37
1wb9_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		3e-37
1wbb_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		3e-37
1oh5_A	800	The Crystal Structure Of E. Coli Muts Binding To Dn		3e-37
3k0s_A	799	Crystal Structure Of E.Coli Dna Mismatch Repair Pro		1e-36
1ng9_A	800	E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt		3e-36
1ewr_A	649	Crystal Structure Of Taq Muts Length = 649		1e-35
1ewq_A	765	Crystal Structure Taq Muts Complexed With A Heterod		1e-35
1fw6_A	768	Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com		1e-35
2o8b_B	1022	Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M		8e-35
1e3m_A	800	The Crystal Structure Of E. Coli Muts Binding To Dn		2e-33

>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934

Iteration: 1
 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 133/174 (76%)
Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G ++L   RH  VE+Q  +++IPNDVYF+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 628 GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687
Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747
Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934

Iteration: 1
 Score =  223 bits (569), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 133/174 (76%)
Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G ++L   RH  VE+Q  +++IPNDVYF+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 628 GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687
Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747
Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/164 (45%), Positives = 110/164 (67%), Gaps = 8/164 (4%)
Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP+VE +    ++PND+      V   L+TGPNM GKST++R   +   LAQ+G FVP 
Sbjct: 557 RHPVVERR--TEFVPNDLEMAHELV---LITGPNMAGKSTFLRQTALIALLAQVGSFVPA 611
Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           + A + + D I+TR+GA+D    G STFM+EM+E A ++K+ TENSLV++DE+GRGTS+ 
Sbjct: 612 EEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671
Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DG  +A ++A  L   R+ +TLFATH+ E+  L   +P  +N+H
Sbjct: 672 DGVAIATAVAEAL-HERRAYTLFATHYFELTALG--LPRLKNLH 712

>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Query: 6   LVLNQCRHPIVELQGGVS--YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA 63
           +V+   RHP++++  G    Y+PN+           ++TGPNMGGKS+YI+ + +   +A
Sbjct: 641 IVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA 700
Query: 64  QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDE 123
           QIG +VP + ATI +VD IFTR+GAAD+ Y+G STFM E+ +TA +I+K T  SLVI+DE
Sbjct: 701 QIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDE 760
Query: 124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR 166
           LGRGTST DG  +A +       + +  TLF TH+  +  L +
Sbjct: 761 LGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 803

>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score =  150 bits (379), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
           + + RHP+VE      +I N +   S +    ++TGPNMGGKSTY+R   +   +A IG 
Sbjct: 580 ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS 638
Query: 68  FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 127
           +VP     I  +D+IFTRVGAAD    G STFM+EM ETA ++   TE SLV++DE+GRG
Sbjct: 639 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRG 698
Query: 128 TSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           TST+DG  +A + A  LA+  +  TLFATH+ E+  L   +    NVH
Sbjct: 699 TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746

>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score =  150 bits (379), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
           + + RHP+VE      +I N +   S +    ++TGPNMGGKSTY+R   +   +A IG 
Sbjct: 580 ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS 638
Query: 68  FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 127
           +VP     I  +D+IFTRVGAAD    G STFM+EM ETA ++   TE SLV++DE+GRG
Sbjct: 639 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRG 698
Query: 128 TSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           TST+DG  +A + A  LA+  +  TLFATH+ E+  L   +    NVH
Sbjct: 699 TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746

>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score =  150 bits (379), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
           + + RHP+VE      +I N +   S +    ++TGPNMGGKSTY+R   +   +A IG 
Sbjct: 580 ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS 638
Query: 68  FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 127
           +VP     I  +D+IFTRVGAAD    G STFM+EM ETA ++   TE SLV++DE+GRG
Sbjct: 639 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRG 698
Query: 128 TSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           TST+DG  +A + A  LA+  +  TLFATH+ E+  L   +    NVH
Sbjct: 699 TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746

>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800

Iteration: 1
 Score =  150 bits (379), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
           + + RHP+VE      +I N +   S +    ++TGPNMGGKSTY+R   +   +A IG 
Sbjct: 580 ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS 638
Query: 68  FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 127
           +VP     I  +D+IFTRVGAAD    G STFM+EM ETA ++   TE SLV++DE+GRG
Sbjct: 639 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRG 698
Query: 128 TSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           TST+DG  +A + A  LA+  +  TLFATH+ E+  L   +    NVH
Sbjct: 699 TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746

>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 104/168 (61%), Gaps = 1/168 (0%)
Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
           + + RHP+VE      +I N +   S +    ++TGPNMGGKSTY+R   +   +A IG 
Sbjct: 579 ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS 637
Query: 68  FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 127
           +VP     I  +D+IFTRVGAAD    G STFM+EM ETA ++   TE SLV+++E+GRG
Sbjct: 638 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMNEIGRG 697
Query: 128 TSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           TST+DG  +A + A  LA+  +  TLFATH+ E+  L   +    NVH
Sbjct: 698 TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 745

>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
           + + RHP+VE      +I N +   S +    ++TGPNMGGKSTY+R   +   +A IG 
Sbjct: 580 ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS 638
Query: 68  FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 127
           +VP     I  +D+IFTRVGAAD    G STFM+EM ETA ++   TE SLV++DE+G G
Sbjct: 639 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGAG 698
Query: 128 TSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           TST+DG  +A + A  LA+  +  TLFATH+ E+  L   +    NVH
Sbjct: 699 TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746

>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts Length = 649

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 8/164 (4%)
Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP+VE +    ++PND+      V   L+TGPN  GKST++R   +   LAQ+G FVP 
Sbjct: 441 RHPVVERR--TEFVPNDLEXAHELV---LITGPNXAGKSTFLRQTALIALLAQVGSFVPA 495
Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           + A + + D I+TR+GA+D    G STF +E +E A ++K+ TENSLV++DE+GRGTS+ 
Sbjct: 496 EEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEVGRGTSSL 555
Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DG  +A ++A  L   R+ +TLFATH+ E+  L   +P  +N+H
Sbjct: 556 DGVAIATAVAEAL-HERRAYTLFATHYFELTALG--LPRLKNLH 596

>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 8/164 (4%)
Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP+VE +    ++PND+      V   L+TGPN  GKST++R   +   LAQ+G FVP 
Sbjct: 557 RHPVVERR--TEFVPNDLEXAHELV---LITGPNXAGKSTFLRQTALIALLAQVGSFVPA 611
Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           + A + + D I+TR+GA+D    G STF +E +E A ++K+ TENSLV++DE+GRGTS+ 
Sbjct: 612 EEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEVGRGTSSL 671
Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DG  +A ++A  L   R+ +TLFATH+ E+  L   +P  +N+H
Sbjct: 672 DGVAIATAVAEAL-HERRAYTLFATHYFELTALG--LPRLKNLH 712

>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 8/164 (4%)
Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP+VE +    ++PND+      V   L+TGPN  GKST++R   +   LAQ+G FVP 
Sbjct: 557 RHPVVERR--TEFVPNDLEXAHELV---LITGPNXAGKSTFLRQTALIALLAQVGSFVPA 611
Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           + A + + D I+TR+GA+D    G STF +E +E A ++K+ TENSLV++DE+GRGTS+ 
Sbjct: 612 EEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEVGRGTSSL 671
Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DG  +A ++A  L   R+ +TLFATH+ E+  L   +P  +N+H
Sbjct: 672 DGVAIATAVAEAL-HERRAYTLFATHYFELTALG--LPRLKNLH 712

>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022

Iteration: 1
 Score =  142 bits (359), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 108/164 (65%), Gaps = 8/164 (4%)
Query: 6   LVLNQCRHP-IVELQGGVSYIPNDVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIG 57
           L L   RHP I +   G  +IPND+         ++G+    LVTGPNMGGKST +R  G
Sbjct: 751 LELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAG 810
Query: 58  VSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENS 117
           +   +AQ+GC+VP +   ++ +D++FTR+GA+D    G STF +E+ ETA+++   T +S
Sbjct: 811 LLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHS 870
Query: 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI 161
           LV++DELGRGT+TFDG  +A ++ +ELA   +  TLF+TH+H +
Sbjct: 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL 914

>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 97/168 (57%), Gaps = 1/168 (0%)
Query: 8   LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 67
           + + RHP+VE      +I N +   S +    ++TGPN GGKSTY R   +    A IG 
Sbjct: 580 ITEGRHPVVEQVLNEPFIANPLNL-SPQRRXLIITGPNXGGKSTYXRQTALIALXAYIGS 638
Query: 68  FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 127
           +VP     I  +D+IFTRVGAAD    G STF +E  ETA ++   TE SLV+ DE+GRG
Sbjct: 639 YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFXVEXTETANILHNATEYSLVLXDEIGRG 698
Query: 128 TSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           TST+DG  +A + A  LA+  +  TLFATH+ E+  L        NVH
Sbjct: 699 TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKXEGVANVH 746

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	1e-100
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	9e-82
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	2e-81
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	6e-80
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	1e-75
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934

 Score =  308 bits (791), Expect = e-100
 Identities = 99/174 (56%), Positives = 133/174 (76%)

Query: 2   GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
           G G ++L   RH  VE+Q  +++IPNDVYF+  +  F+++TGPNMGGKSTYIR  GV V 
Sbjct: 628 GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query: 62  LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
           +AQIGCFVPC+SA +S+VD I  RVGA DSQ +G+STFM EM ETA++++  T++SL+II
Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747

Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DELGRGTST+DGFG+A +I+  +A+    F +FATHFHE+  L+  IPT  N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918

 Score =  258 bits (662), Expect = 9e-82
 Identities = 73/167 (43%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 12  RHPIVE--LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFV 69
           RHP+++  L     Y+PN+           ++TGPNMGGKS+YI+ + +   +AQIG +V
Sbjct: 647 RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV 706

Query: 70  PCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTS 129
           P + ATI +VD IFTR+GAAD+ Y+G STFM E+ +TA +I+K T  SLVI+DELGRGTS
Sbjct: 707 PAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTS 766

Query: 130 TFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPT-FRNVH 175
           T DG  +A +       + +  TLF TH+  +  L +       N H
Sbjct: 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYH 813

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022

 Score =  259 bits (663), Expect = 2e-81
 Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 8/181 (4%)

Query: 3   TGTLVLNQCRHPIVE-LQGGVSYIPNDVYF-------KSGEVSFNLVTGPNMGGKSTYIR 54
              L L   RHP +     G  +IPND+         ++G+    LVTGPNMGGKST +R
Sbjct: 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMR 807

Query: 55  SIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCT 114
             G+   +AQ+GC+VP +   ++ +D++FTR+GA+D    G STF +E+ ETA+++   T
Sbjct: 808 QAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHAT 867

Query: 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNV 174
            +SLV++DELGRGT+TFDG  +A ++ +ELA   +  TLF+TH+H +          R  
Sbjct: 868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLG 927

Query: 175 H 175
           H
Sbjct: 928 H 928

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800

 Score =  252 bits (645), Expect = 6e-80
 Identities = 76/164 (46%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP+VE      +I N +   S +    ++TGPNMGGKSTY+R   +   +A IG +VP 
Sbjct: 584 RHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA 642

Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
               I  +D+IFTRVGAAD    G STFM+EM ETA ++   TE SLV++DE+GRGTST+
Sbjct: 643 QKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTY 702

Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DG  +A + A  LA+  +  TLFATH+ E+  L   +    NVH
Sbjct: 703 DGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765

 Score =  240 bits (614), Expect = 1e-75
 Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 8/164 (4%)

Query: 12  RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
           RHP+VE +    ++PND+   + E+   L+TGPNM GKST++R   +   LAQ+G FVP 
Sbjct: 557 RHPVVERR--TEFVPNDLEM-AHELV--LITGPNMAGKSTFLRQTALIALLAQVGSFVPA 611

Query: 72  DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
           + A + + D I+TR+GA+D    G STFM+EM+E A ++K+ TENSLV++DE+GRGTS+ 
Sbjct: 612 EEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671

Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
           DG  +A ++A  L   R  +TLFATH+ E+  L   +P  +N+H
Sbjct: 672 DGVAIATAVAEALHERR-AYTLFATHYFELTALG--LPRLKNLH 712

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 61/220 (27%)

Query: 9   NQCRHPIVELQGGVSY---IPNDV-YFKSGEVS------------FNLVTGPN-----MG 47
            + R P +  +  +     + ND   F    VS              L    N     + 
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 48  G--KST----YIRSIGV------SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRG 95
           G  K+        S  V       +F   +     C+S   +V++ +   +   D  +  
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPE-TVLEMLQKLLYQIDPNWTS 215

Query: 96  ISTFMMEMKETATVIK---------KCTENSLVIIDELGRGTSTFDGFGMACSIARELAS 146
            S     +K     I+         K  EN L+++  + +    ++ F ++C I      
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKI------ 268

Query: 147 NRQPFTLFATHFHEIA--LLSRVIPTFRNVHESKYLYHTN 184
                 L  T F ++   L +         H S  L    
Sbjct: 269 ------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	100.0
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.98
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.98
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.98
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.98
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.97
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.97
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.97
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.96
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.96
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.96
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.96
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.96
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.94
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.94
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.94
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.91
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.9
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.89
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.88
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.87
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.87
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.84
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.82
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.82
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.81
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.81
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.81
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.79
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.79
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.78
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.78
2og2_A	359	Putative signal recognition particle receptor; nuc	99.78
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.77
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.77
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.77
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.77
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.76
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.75
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.75
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.75
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.74
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.73
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.71
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.71
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.7
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.69
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.67
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.66
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.63
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.6
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.57
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.55
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.55
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.54
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.52
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.51
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.49
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.45
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.41
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.4
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.38
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.37
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.37
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.36
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.35
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.34
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.34
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.34
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.3
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.26
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.24
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.22
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.22
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.2
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.16
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.16
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.16
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.15
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.14
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.13
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.11
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.09
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.08
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.04
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.01
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.91
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.91
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.9
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.87
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.85
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.79
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.77
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.73
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.7
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.68
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.67
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.67
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.64
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.63
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.62
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.6
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.58
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.57
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.56
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.53
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.51
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.44
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.42
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.42
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.41
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.41
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.4
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.38
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.38
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.36
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.35
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.34
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.33
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.33
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.32
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.3
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.29
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.28
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.27
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.24
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.23
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.23
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.18
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.17
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.17
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.17
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.15
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.15
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.15
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.15
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.14
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.14
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.14
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.12
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.12
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	98.11
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.1
3bos_A	242	Putative DNA replication factor; P-loop containing	98.1
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	98.06
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.05
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.02
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.02
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.01
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.01
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.0
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.99
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.98
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.94
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.92
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.91
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.91
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.88
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.88
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.87
3io5_A	333	Recombination and repair protein; storage dimer, i	97.87
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.83
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.83
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.82
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.8
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.8
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.8
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.8
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.79
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.78
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.77
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.77
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.75
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.74
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.73
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.68
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.67
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.65
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.65
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.61
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.61
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.6
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.59
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.59
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.59
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.58
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.58
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.55
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.55
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.54
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.53
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.53
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.53
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.52
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.52
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.51
2qgz_A	308	Helicase loader, putative primosome component; str	97.5
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.5
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.49
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.48
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.45
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.45
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.43
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.42
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.41
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.41
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.39
3ice_A	422	Transcription termination factor RHO; transcriptio	97.37
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.37
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.37
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.36
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.34
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.33
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.33
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.33
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.32
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.32
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.31
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.31
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.31
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.29
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.27
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.26
1via_A	175	Shikimate kinase; structural genomics, transferase	97.25
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.24
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.23
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.22
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.21
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.2
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.2
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	97.19
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.19
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.17
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.17
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.15
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.15
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.15
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.13
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	97.12
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.11
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.11
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.11
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.1
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.08
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.06
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.03
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.02
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.02
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.01
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.01
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.99
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.99
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.98
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.98
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.96
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.96
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.93
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.92
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.89
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.87
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.87
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.86
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.86
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.85
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.84
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.84
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.83
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.83
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.83
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.81
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.81
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.79
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.79
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.77
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.75
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.75
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.74
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.74
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.72
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.72
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.71
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.69
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.69
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.68
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.68
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.67
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.66
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.64
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.63
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.63
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.63
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.62
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.62
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.62
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.62
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.6
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.59
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.59
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.59
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.59
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.59
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.58
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.57
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.57
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.57
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.57
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.56
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.56
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.56
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.56
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.55
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.54
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.54
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.54
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.52
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.51
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.51
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.51
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.5
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.5
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.49
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.49
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.48
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.45
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.45
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.45
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.44
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.42
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.41
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.41
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.4
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.4
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.39
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.39
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.38
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.38
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.38
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.36
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.36
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.36
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.35
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.35
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.35
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.35
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.34
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.34
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.32
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.32
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.31
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.3
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.3
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.29
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.27
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.27
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.27
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.27
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.27
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.26
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.26
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.26
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.25
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.25
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.24
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.24
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.24
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.23
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.23
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.23
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.21
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.2
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.2
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.2
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.19
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.19
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.19
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.18
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.18
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.16
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.16
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.15
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.15
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.15
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.14
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.14
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.13
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.12
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.11
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.1
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.1
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.1
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.1
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.1
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.09
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.09
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.09
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.07
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.07
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.06
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.06
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.05
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.05
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.04
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.04
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.03
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.02
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.01
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.99
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.99
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.98
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.98
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.96
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.95
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.92
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.92
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.9
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.9
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.89
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.86
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.83
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.82
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.82
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.81
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.8
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.78
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.76
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.67
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.65
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.64
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.64
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.6
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.6
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.59
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.58

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=2.4e-44  Score=292.72  Aligned_cols=178  Identities=16%  Similarity=0.131  Sum_probs=143.0

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------   60 (185)
                      |.++.++++|++..|   . +...+++|+||++++|++++|+||||||||||+|+|        |.|.            
T Consensus         3 m~~~~l~i~~ls~~y---~-~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~   78 (275)
T 3gfo_A            3 LEDYILKVEELNYNY---S-DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG   78 (275)
T ss_dssp             -CCEEEEEEEEEEEC---T-TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHH
T ss_pred             CcCcEEEEEEEEEEE---C-CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccccc
Confidence            345567888877655   1 234699999999999999999999999999999999        2221            


Q ss_pred             ---HHHhhCceecCCCC----Ccc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          61 ---FLAQIGCFVPCDSA----TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        61 ---~~~~~g~~v~~~~~----~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                         ++.++| |+||++.    ..+                     .++++++.+++.+..++++.+||+|||||++||++
T Consensus        79 ~~~~~~~ig-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra  157 (275)
T 3gfo_A           79 IMKLRESIG-IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV  157 (275)
T ss_dssp             HHHHHHSEE-EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred             HHHHhCcEE-EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence               234566 9999752    122                     24566788899999999999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      + .+|++|||||||+|+|+.....+.+.+ ..++++.|.|||++||+ .++..+||++++|++|++++.+++++
T Consensus       158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l-~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~  230 (275)
T 3gfo_A          158 LVMEPKVLILDEPTAGLDPMGVSEIMKLL-VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE  230 (275)
T ss_dssp             HTTCCSEEEEECTTTTCCHHHHHHHHHHH-HHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred             HHcCCCEEEEECccccCCHHHHHHHHHHH-HHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9 999999999997777776666555544 66662249999999999 78888999999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=6.5e-44  Score=299.57  Aligned_cols=179  Identities=15%  Similarity=0.131  Sum_probs=143.9

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------   60 (185)
                      ++.+++++++..|-. ..+...+|+||||++++|++++|+||||||||||+|+|        |.|.              
T Consensus        22 ~~mi~v~~ls~~y~~-~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           22 KHMIKLSNITKVFHQ-GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             -CCEEEEEEEEEEEC-SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred             CceEEEEeEEEEeCC-CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence            345677777655522 11235699999999999999999999999999999999        3221              


Q ss_pred             --HHHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          61 --FLAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        61 --~~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                        ++.++| |+||++..++                        .+.++++.+++.+..++++++||||||||++|||++ 
T Consensus       101 ~~~r~~Ig-~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~  179 (366)
T 3tui_C          101 TKARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA  179 (366)
T ss_dssp             HHHHTTEE-EECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred             HHHhCcEE-EEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence              234566 9999874332                        245678889999999999999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|++|||||||+|+|+.....+.+.+ +.++++.|.|||++||+ ..+.++|||+++|++|++++.|++++
T Consensus       180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL-~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e  250 (366)
T 3tui_C          180 SNPKVLLCDQATSALDPATTRSILELL-KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE  250 (366)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred             cCCCEEEEECCCccCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999999997777776666665544 67765469999999999 77888999999999999999987654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=2.2e-44  Score=302.01  Aligned_cols=173  Identities=12%  Similarity=0.139  Sum_probs=142.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------   61 (185)
                      .+++++++..|     +...+++|+||++++||+++|+||||||||||||+|        |.|.+               
T Consensus         4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~   78 (359)
T 3fvq_A            4 ALHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR   78 (359)
T ss_dssp             CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGG
T ss_pred             EEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchh
Confidence            57788877665     346799999999999999999999999999999999        33332               


Q ss_pred             HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      ...+| |+||++..++                        .++++++.+++.+..++++.+||||||||++|||++ .+|
T Consensus        79 ~r~ig-~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P  157 (359)
T 3fvq_A           79 ERRLG-YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP  157 (359)
T ss_dssp             GSCCE-EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             hCCEE-EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            12355 9999874332                        245678889999999999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++||||||+|+|+.....+...+ ..+.++.|.|+|++||| .++..+|||+++|++|+++..+++++
T Consensus       158 ~lLLLDEPts~LD~~~r~~l~~~l-~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~e  225 (359)
T 3fvq_A          158 ELILLDEPFSALDEQLRRQIREDM-IAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHE  225 (359)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHH-HHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHH
Confidence            999999997776666555555444 34433369999999999 88889999999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=9.7e-44  Score=287.37  Aligned_cols=176  Identities=14%  Similarity=0.100  Sum_probs=140.4

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------   60 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------   60 (185)
                      |.++.+++++++..|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.            
T Consensus         2 m~~~~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~   76 (262)
T 1b0u_A            2 MSENKLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK   76 (262)
T ss_dssp             ---CCEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECT
T ss_pred             CCCceEEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccc
Confidence            445567888877655     346799999999999999999999999999999999        3221            


Q ss_pred             --------------HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCcccc-cccCcCccH
Q psy5297          61 --------------FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADS-QYRGISTFM  100 (185)
Q Consensus        61 --------------~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~-~~~~~~~lS  100 (185)
                                    +..+++ |+||++..+   ++                      ++++++.+++.+. .++++++||
T Consensus        77 ~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS  155 (262)
T 1b0u_A           77 DGQLKVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS  155 (262)
T ss_dssp             TSSEEESCHHHHHHHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred             cccccccChhhHHHHhcceE-EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence                          233466 999986322   21                      3346777888888 899999999


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      +|||||++|||++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++.
T Consensus       156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l-~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~  233 (262)
T 1b0u_A          156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM-QQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE  233 (262)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999 999999999997777766655555544 66666 48999999999 77788999999999999998


Q ss_pred             EeccCC
Q psy5297         179 YLYHTN  184 (185)
Q Consensus       179 ~~~~~~  184 (185)
                      .+++++
T Consensus       234 ~g~~~~  239 (262)
T 1b0u_A          234 EGDPEQ  239 (262)
T ss_dssp             EECHHH
T ss_pred             eCCHHH
Confidence            887643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=6.8e-44  Score=284.08  Aligned_cols=177  Identities=14%  Similarity=0.149  Sum_probs=136.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------   61 (185)
                      ++++|+...|-.. .....+++|+||++++|++++|+||||||||||+|+|        |.|.+                
T Consensus         2 l~~~~l~~~y~~~-~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            2 VKLKNVTKTYKMG-EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEEEEeCCC-CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            5666666544210 1124699999999999999999999999999999999        33211                


Q ss_pred             -HHhhCceecCCCCCc---ch------------------------hhHHHhhcCcccc-cccCcCccHHHHHHHHHHHHh
Q psy5297          62 -LAQIGCFVPCDSATI---SV------------------------VDQIFTRVGAADS-QYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        62 -~~~~g~~v~~~~~~~---~~------------------------~~~~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~  112 (185)
                       ..+++ |+||++..+   ++                        +.++++.+++.+. .++++++||+|||||++|||+
T Consensus        81 ~~~~i~-~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra  159 (235)
T 3tif_A           81 RRDKIG-FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (235)
T ss_dssp             HHHHEE-EECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             hhccEE-EEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence             12467 999987332   22                        2345666777765 489999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      + .+|+++||||||+|+|+.....+...+ ..++++.|.|||++||+.++.++||++++|++|+++..++.+++
T Consensus       160 l~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~  232 (235)
T 3tif_A          160 LANNPPIILADQPTWALDSKTGEKIMQLL-KKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence            9 999999999997777766655555544 66655358999999999557789999999999999999887653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=2.8e-43  Score=285.27  Aligned_cols=174  Identities=14%  Similarity=0.105  Sum_probs=140.4

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FL   62 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~   62 (185)
                      +.+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.             +.
T Consensus        10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~   84 (266)
T 4g1u_C           10 ALLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA   84 (266)
T ss_dssp             CEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred             ceEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHh
Confidence            356666665544     347899999999999999999999999999999999        3332             22


Q ss_pred             HhhCceecCCCCC---cc-------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C-----
Q psy5297          63 AQIGCFVPCDSAT---IS-------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T-----  114 (185)
Q Consensus        63 ~~~g~~v~~~~~~---~~-------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~-----  114 (185)
                      ..++ |+||.+..   ++                   .++++++.+++.+..++++++||+|||||++|||++ .     
T Consensus        85 ~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~  163 (266)
T 4g1u_C           85 RTRA-VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQ  163 (266)
T ss_dssp             HHEE-EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred             heEE-EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence            3455 99997632   22                   245667888998889999999999999999999999 8     


Q ss_pred             -CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 -ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 -~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       +|++|||||||+|+|+.....+.+.+ +.++++.+.|||++||| .++..+||++++|++|++++.+++++
T Consensus       164 ~~p~lLllDEPts~LD~~~~~~i~~~l-~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~  234 (266)
T 4g1u_C          164 PTPRWLFLDEPTSALDLYHQQHTLRLL-RQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE  234 (266)
T ss_dssp             CCCEEEEECCCCSSCCHHHHHHHHHHH-HHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence             99999999997777776666555544 66665346799999999 77888999999999999999988754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=4.2e-44  Score=302.27  Aligned_cols=173  Identities=19%  Similarity=0.164  Sum_probs=143.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------Hhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------AQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------~~~   65 (185)
                      .+++++++..|     +...+++|+||++++||+++|+||||||||||||+|        |.|.+.           ..+
T Consensus         3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~i   77 (381)
T 3rlf_A            3 SVQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV   77 (381)
T ss_dssp             CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCE
T ss_pred             EEEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCE
Confidence            47788887666     346799999999999999999999999999999999        444331           235


Q ss_pred             CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      | |+||++..++                        .++++++.+++.+..++++.+||||||||++|||++ .+|+++|
T Consensus        78 g-~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL  156 (381)
T 3rlf_A           78 G-MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL  156 (381)
T ss_dssp             E-EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred             E-EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE
Confidence            6 9999874433                        245677889999999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+|||+++|++|+++..+++++
T Consensus       157 LDEPts~LD~~~~~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~  220 (381)
T 3rlf_A          157 LDEPLSNLDAALRVQMRIEI-SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE  220 (381)
T ss_dssp             EESTTTTSCHHHHHHHHHHH-HHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             EECCCcCCCHHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            99996666665555555544 66655459999999999 88899999999999999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=7.5e-43  Score=278.82  Aligned_cols=176  Identities=14%  Similarity=0.085  Sum_probs=140.0

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |.++.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+           
T Consensus         2 ~~~~~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   76 (240)
T 1ji0_A            2 VSDIVLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH   76 (240)
T ss_dssp             CCSEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred             CCCceEEEEeEEEEE-----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHH
Confidence            455678888877655     236799999999999999999999999999999999        33211           


Q ss_pred             ---HHhhCceecCCCCCc---ch--------------------hhHHHhhc-CcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 ---LAQIGCFVPCDSATI---SV--------------------VDQIFTRV-GAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 ---~~~~g~~v~~~~~~~---~~--------------------~~~~l~~~-~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                         ...++ |+||++..+   ++                    ++++++.+ ++.+..++++++||+|||||++|||++ 
T Consensus        77 ~~~~~~i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~  155 (240)
T 1ji0_A           77 VINRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM  155 (240)
T ss_dssp             HHHHTTEE-EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred             HHHhCCEE-EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHH
Confidence               12356 999976322   21                    23455666 487788999999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       156 ~~p~lllLDEPts~LD~~~~~~l~~~l-~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  225 (240)
T 1ji0_A          156 SRPKLLMMDEPSLGLAPILVSEVFEVI-QKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             TCCSEEEEECTTTTCCHHHHHHHHHHH-HHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999999997777776655555544 66665 58999999999 68889999999999999998887543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.3e-42  Score=280.90  Aligned_cols=172  Identities=14%  Similarity=0.127  Sum_probs=138.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------------H
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------F   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------~   61 (185)
                      .++++|+...|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.               +
T Consensus        24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   98 (263)
T 2olj_A           24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV   98 (263)
T ss_dssp             SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHH
T ss_pred             eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHH
Confidence            36666665444     346799999999999999999999999999999999        3321               2


Q ss_pred             HHhhCceecCCCCCc---c----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          62 LAQIGCFVPCDSATI---S----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~---~----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ..+++ |+||++..+   +                      .++++++.+++.+..++++++||+|||||++||+++ .+
T Consensus        99 ~~~i~-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~  177 (263)
T 2olj_A           99 REEVG-MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAME  177 (263)
T ss_dssp             HHHEE-EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hCcEE-EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCC
Confidence            34466 999986322   2                      133567778888889999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       178 p~lllLDEPts~LD~~~~~~~~~~l-~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  245 (263)
T 2olj_A          178 PKIMLFDEPTSALDPEMVGEVLSVM-KQLAN-EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPED  245 (263)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHH-HHHHH-TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999997777766655555544 66666 49999999999 77888999999999999998887653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=3.6e-42  Score=272.30  Aligned_cols=169  Identities=15%  Similarity=0.127  Sum_probs=136.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------   60 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.                
T Consensus         4 ~l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   78 (224)
T 2pcj_A            4 ILRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL   78 (224)
T ss_dssp             EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHH
T ss_pred             EEEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHH
Confidence            57777776555     236799999999999999999999999999999999        2221                


Q ss_pred             HH-HhhCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          61 FL-AQIGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        61 ~~-~~~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      ++ .+++ |+||++..+   +                     .+.++++.+++.+..++++++||+|||||++||+++ .
T Consensus        79 ~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~  157 (224)
T 2pcj_A           79 LRNRKLG-FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN  157 (224)
T ss_dssp             HHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT
T ss_pred             HHhCcEE-EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence            12 3466 999986322   2                     134567788998889999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEec
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      +|+++||||||+|+|+.....+.+. +..+++ .|.|||++||+.+...+||++++|++|+++..++
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~~~~~-l~~l~~-~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          158 EPILLFADEPTGNLDSANTKRVMDI-FLKINE-GGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHH-HHHHHH-TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHH-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence            9999999999777766665555554 466666 3899999999944448999999999999998876

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.3e-42  Score=279.98  Aligned_cols=172  Identities=20%  Similarity=0.265  Sum_probs=138.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQ   64 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~   64 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.            +..+
T Consensus        15 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   89 (256)
T 1vpl_A           15 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL   89 (256)
T ss_dssp             CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred             eEEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhc
Confidence            45566665444     346799999999999999999999999999999999        3322            2334


Q ss_pred             hCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297          65 IGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV  119 (185)
Q Consensus        65 ~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll  119 (185)
                      ++ |+||++..+   +                     .++++++.+++.+..++++++||+|||||++||+++ .+|+++
T Consensus        90 i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll  168 (256)
T 1vpl_A           90 IS-YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA  168 (256)
T ss_dssp             EE-EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EE-EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            56 999986322   2                     134567788998889999999999999999999999 999999


Q ss_pred             EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       169 lLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  232 (256)
T 1vpl_A          169 ILDEPTSGLDVLNAREVRKIL-KQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE  232 (256)
T ss_dssp             EEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred             EEeCCccccCHHHHHHHHHHH-HHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHH
Confidence            999997777776655555544 66665 58999999999 77778999999999999998887543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=4.2e-43  Score=294.66  Aligned_cols=173  Identities=16%  Similarity=0.172  Sum_probs=141.0

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~   65 (185)
                      .+++++++..|     +++.+++|+||++++|++++|+||||||||||||+|        |.|.+           ..++
T Consensus         3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i   77 (359)
T 2yyz_A            3 SIRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV   77 (359)
T ss_dssp             CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred             EEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcE
Confidence            46777776655     346799999999999999999999999999999999        33332           1245


Q ss_pred             CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + |+||++..++                        .++++++.+++.+..++++++||||||||++|||++ .+|+++|
T Consensus        78 g-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL  156 (359)
T 2yyz_A           78 G-MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL  156 (359)
T ss_dssp             E-EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             E-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            6 9999873332                        245677888999999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       157 LDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~  220 (359)
T 2yyz_A          157 FDEPLSNLDANLRMIMRAEI-KHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE  220 (359)
T ss_dssp             EESTTTTSCHHHHHHHHHHH-HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             EECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99997776666555555544 56654358999999999 78889999999999999999887654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.2e-43  Score=294.37  Aligned_cols=173  Identities=17%  Similarity=0.163  Sum_probs=140.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~   65 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+           ..++
T Consensus         3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i   77 (362)
T 2it1_A            3 EIKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV   77 (362)
T ss_dssp             CEEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred             EEEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcE
Confidence            46777776655     235799999999999999999999999999999999        33332           1245


Q ss_pred             CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + |+||++..++                        .++++++.+++.+..++++++||||||||++|||++ .+|+++|
T Consensus        78 g-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL  156 (362)
T 2it1_A           78 G-LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL  156 (362)
T ss_dssp             E-EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             E-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            6 9999874332                        134567888999999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||++++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       157 LDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~  220 (362)
T 2it1_A          157 LDEPLSNLDALLRLEVRAEL-KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE  220 (362)
T ss_dssp             EESGGGGSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             EECccccCCHHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99996666665555555544 66654358999999999 78889999999999999999887654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=4.6e-43  Score=293.87  Aligned_cols=175  Identities=15%  Similarity=0.113  Sum_probs=139.8

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHh
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQ   64 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~   64 (185)
                      +.++++++...|-    +++.+++|+||++++|++++|+||||||||||||+|        |.|.+           ..+
T Consensus        13 ~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~   88 (355)
T 1z47_A           13 MTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN   88 (355)
T ss_dssp             EEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred             ceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence            3466666655441    234699999999999999999999999999999999        33332           123


Q ss_pred             hCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297          65 IGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV  119 (185)
Q Consensus        65 ~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll  119 (185)
                      ++ |+||++..++                        .++++++.+++.+..++++++||||||||++|||++ .+|+++
T Consensus        89 ig-~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL  167 (355)
T 1z47_A           89 VG-LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL  167 (355)
T ss_dssp             EE-EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EE-EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            55 9999863332                        234567888999999999999999999999999999 999999


Q ss_pred             EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       168 LLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~  232 (355)
T 1z47_A          168 LFDEPFAAIDTQIRRELRTFV-RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEE  232 (355)
T ss_dssp             EEESTTCCSSHHHHHHHHHHH-HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999997776665555555544 56654358999999999 88889999999999999999887654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=7e-42  Score=275.71  Aligned_cols=172  Identities=15%  Similarity=0.058  Sum_probs=137.9

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------HH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------FL   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~~   62 (185)
                      .++++++...|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.              +.
T Consensus         7 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (257)
T 1g6h_A            7 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH   81 (257)
T ss_dssp             EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             EEEEeeeEEEE-----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            46777776544     346799999999999999999999999999999999        3221              12


Q ss_pred             HhhCceecCCCCCc---c----------------------------------hhhHHHhhcCcccccccCcCccHHHHHH
Q psy5297          63 AQIGCFVPCDSATI---S----------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKE  105 (185)
Q Consensus        63 ~~~g~~v~~~~~~~---~----------------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q  105 (185)
                      .+++ |+||++..+   +                                  .++++++.+++.+..++++++||+||||
T Consensus        82 ~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQ  160 (257)
T 1g6h_A           82 YGIV-RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK  160 (257)
T ss_dssp             HTEE-ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred             CCEE-EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHH
Confidence            3456 898875211   1                                  1234566778888889999999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |++||+++ .+|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||++++|++|+++..++++
T Consensus       161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  238 (257)
T 1g6h_A          161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV-LELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE  238 (257)
T ss_dssp             HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESH
T ss_pred             HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHH
Confidence            99999999 999999999997777776666555544 66666 49999999999 7788899999999999999888765


Q ss_pred             C
Q psy5297         184 N  184 (185)
Q Consensus       184 ~  184 (185)
                      +
T Consensus       239 ~  239 (257)
T 1g6h_A          239 E  239 (257)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.3e-42  Score=290.72  Aligned_cols=171  Identities=13%  Similarity=0.095  Sum_probs=139.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG   66 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g   66 (185)
                      +++++++..|     +.+ +++|+||++++|++++|+||||||||||||+|        |.|.+           ..+++
T Consensus         2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig   75 (348)
T 3d31_A            2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA   75 (348)
T ss_dssp             EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE
T ss_pred             EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE
Confidence            5566665544     235 99999999999999999999999999999999        33322           34566


Q ss_pred             ceecCCCCCcc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297          67 CFVPCDSATIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDEL  124 (185)
Q Consensus        67 ~~v~~~~~~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP  124 (185)
                       |+||++..++                     .++++++.+++.+..++++++||+|||||++|||++ .+|+++|||||
T Consensus        76 -~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP  154 (348)
T 3d31_A           76 -FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP  154 (348)
T ss_dssp             -EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred             -EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence             9999874332                     134567888999999999999999999999999999 99999999999


Q ss_pred             CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       155 ~s~LD~~~~~~l~~~l-~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~  214 (348)
T 3d31_A          155 LSALDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE  214 (348)
T ss_dssp             STTSCHHHHHHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred             cccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            7776666655555544 66655469999999999 78889999999999999999887654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1e-42  Score=280.05  Aligned_cols=172  Identities=17%  Similarity=0.195  Sum_probs=137.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI   76 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~   76 (185)
                      .+++++++..|   . +++.+++|+||++++|++++|+||||||||||+|+|        |.|.+...++ |+||++..+
T Consensus         4 ~l~i~~l~~~y---~-~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~-~v~q~~~~~   78 (253)
T 2nq2_C            4 ALSVENLGFYY---Q-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIG-FVPQFFSSP   78 (253)
T ss_dssp             EEEEEEEEEEE---T-TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSCCCCS
T ss_pred             eEEEeeEEEEe---C-CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEE-EEcCCCccC
Confidence            47777776544   1 036799999999999999999999999999999999        4444334456 899876221


Q ss_pred             ---ch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Q psy5297          77 ---SV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG  127 (185)
Q Consensus        77 ---~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g  127 (185)
                         ++                         ++++++.+++.+..++++++||+|||||++|||++ .+|+++||||||+|
T Consensus        79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~  158 (253)
T 2nq2_C           79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA  158 (253)
T ss_dssp             SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred             CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence               11                         23456778888888999999999999999999999 99999999999777


Q ss_pred             CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +|+.....+.+.+ ..++++.|.|||++||+ .++..+||++++|++|+ +..++++
T Consensus       159 LD~~~~~~l~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~  213 (253)
T 2nq2_C          159 LDLANQDIVLSLL-IDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETR  213 (253)
T ss_dssp             SCHHHHHHHHHHH-HHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHH
T ss_pred             CCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHH
Confidence            7666655555544 66665348999999999 77789999999999999 8877654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=8.9e-43  Score=292.31  Aligned_cols=173  Identities=14%  Similarity=0.103  Sum_probs=141.7

Q ss_pred             eEEEcccCCceeeecCCcee--eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSY--IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~--il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------   61 (185)
                      .+++++++..|     +++.  +++|+||++++|++++|+||||||||||||+|        |.|.+             
T Consensus         3 ~l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~   77 (353)
T 1oxx_K            3 RIIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV   77 (353)
T ss_dssp             CEEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS
T ss_pred             EEEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccC
Confidence            46777776655     2245  99999999999999999999999999999999        33322             


Q ss_pred             ---HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          62 ---LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        62 ---~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                         ..+++ |+||++..++                        .++++++.+++.+..++++++||||||||++|||++ 
T Consensus        78 ~~~~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~  156 (353)
T 1oxx_K           78 PPEDRKIG-MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV  156 (353)
T ss_dssp             CGGGSCEE-EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred             ChhhCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence               12345 9999863322                        244677888999999999999999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++||||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       157 ~~P~lLLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~  227 (353)
T 1oxx_K          157 KDPSLLLLDEPFSNLDARMRDSARALV-KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED  227 (353)
T ss_dssp             TCCSEEEEESTTTTSCGGGHHHHHHHH-HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             hCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999999998888777766666654 66654358999999999 88889999999999999999887654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=8e-43  Score=294.16  Aligned_cols=172  Identities=18%  Similarity=0.147  Sum_probs=137.2

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG   66 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g   66 (185)
                      +++++++..|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+           ..+++
T Consensus        12 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig   86 (372)
T 1v43_A           12 VKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS   86 (372)
T ss_dssp             EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred             EEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEE
Confidence            5666665544     336799999999999999999999999999999999        33322           23456


Q ss_pred             ceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297          67 CFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVII  121 (185)
Q Consensus        67 ~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llll  121 (185)
                       |+||++..+   +                     .++++++.+++.+..++++++||||||||++|||++ .+|+++||
T Consensus        87 -~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL  165 (372)
T 1v43_A           87 -MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM  165 (372)
T ss_dssp             -EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             -EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence             999986322   2                     245677889999999999999999999999999999 99999999


Q ss_pred             eCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       122 DEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||++++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       166 DEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~  228 (372)
T 1v43_A          166 DEPLSNLDAKLRVAMRAEI-KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE  228 (372)
T ss_dssp             ESTTTTSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             cCCCccCCHHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9997776666555555544 56654358999999999 78889999999999999999887654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.5e-42  Score=292.71  Aligned_cols=173  Identities=15%  Similarity=0.127  Sum_probs=140.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------------   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------------   62 (185)
                      .+++++++..|     +.+.+++|+||++++|++++|+||||||||||||+|        |.|.+.              
T Consensus         3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~   77 (372)
T 1g29_1            3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP   77 (372)
T ss_dssp             EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred             EEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC
Confidence            46777776655     336799999999999999999999999999999999        333221              


Q ss_pred             ---HhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          63 ---AQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        63 ---~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                         .+++ |+||++..++                        .++++++.+++.+..++++++||||||||++|||++ .
T Consensus        78 ~~~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~  156 (372)
T 1g29_1           78 PKDRDIA-MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR  156 (372)
T ss_dssp             GGGSSEE-EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred             HhHCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc
Confidence               2345 9999874332                        134567888999999999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus       157 ~P~lLLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~  226 (372)
T 1g29_1          157 KPQVFLMDEPLSNLDAKLRVRMRAEL-KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE  226 (372)
T ss_dssp             CCSEEEEECTTTTSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEECCCCccCCHHHHHHHHHHH-HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            99999999997776665555555544 56654358999999999 88889999999999999999887654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.7e-42  Score=276.86  Aligned_cols=169  Identities=20%  Similarity=0.223  Sum_probs=134.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------HhhC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------AQIG   66 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------~~~g   66 (185)
                      +++++++..|     +.  +++|+||++++ ++++|+||||||||||+|+|        |.|.+.           .+++
T Consensus         2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~   73 (240)
T 2onk_A            2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG   73 (240)
T ss_dssp             CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCB
T ss_pred             EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEE
Confidence            4555655444     11  59999999999 99999999999999999999        333321           2345


Q ss_pred             ceecCCCCCc---c-------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297          67 CFVPCDSATI---S-------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE  123 (185)
Q Consensus        67 ~~v~~~~~~~---~-------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE  123 (185)
                       |+||++..+   +                   .++++++.+++.+..++++++||+|||||++|||++ .+|+++||||
T Consensus        74 -~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  152 (240)
T 2onk_A           74 -FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE  152 (240)
T ss_dssp             -CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred             -EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence             999976322   2                   134567888998889999999999999999999999 9999999999


Q ss_pred             CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||+|+|+.....+.+.+ ..++++.|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       153 Pts~LD~~~~~~~~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  213 (240)
T 2onk_A          153 PLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKE  213 (240)
T ss_dssp             TTSSCCHHHHHHHHHHH-HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            97777766655555544 56654348999999999 77889999999999999998887653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.7e-41  Score=276.55  Aligned_cols=174  Identities=18%  Similarity=0.202  Sum_probs=137.1

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------   60 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------   60 (185)
                      ++.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+|        |.|.              
T Consensus        19 ~~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~   93 (279)
T 2ihy_A           19 HMLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE   93 (279)
T ss_dssp             CEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred             CceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence            3456666665544     336799999999999999999999999999999999        3221              


Q ss_pred             -HHHhhCceecCCCC---Cc--ch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297          61 -FLAQIGCFVPCDSA---TI--SV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        61 -~~~~~g~~v~~~~~---~~--~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i  109 (185)
                       +..+++ |+||++.   ..  ++                         +.++++.+++.+..++++++||+|||||++|
T Consensus        94 ~~~~~i~-~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l  172 (279)
T 2ihy_A           94 TVRQHIG-FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI  172 (279)
T ss_dssp             HHHTTEE-EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             HHcCcEE-EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence             123455 8888641   11  21                         2345677888888899999999999999999


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeE--EEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFT--LFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~v--ii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||++ .+|+++||||||+|+|+.....+.+.+ ..++++ |.||  |++||+ .++..+||++++|++|+++..+++++
T Consensus       173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l-~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  249 (279)
T 2ihy_A          173 ARALMGQPQVLILDEPAAGLDFIARESLLSIL-DSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED  249 (279)
T ss_dssp             HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH-HHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHH
T ss_pred             HHHHhCCCCEEEEeCCccccCHHHHHHHHHHH-HHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999 999999999997777766655555544 666653 8899  999999 77788999999999999998887643

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.1e-40  Score=269.92  Aligned_cols=173  Identities=14%  Similarity=0.089  Sum_probs=137.3

Q ss_pred             EEEcccCCceeeecCCc---eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------HHHh
Q psy5297           6 LVLNQCRHPIVELQGGV---SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------FLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~---~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------~~~~   64 (185)
                      +++++++..|   ..+.   +.+++|+||++++|++++|+||||||||||+|+|        |.|.          +..+
T Consensus         3 l~~~~l~~~y---~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~   79 (266)
T 2yz2_A            3 IEVVNVSHIF---HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN   79 (266)
T ss_dssp             EEEEEEEEEE---STTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGG
T ss_pred             EEEEEEEEEe---cCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhh
Confidence            6677776544   2112   5799999999999999999999999999999999        3332          2334


Q ss_pred             hCceecCCC-C---Ccc--------------------hhhHHHhhcCcc--cccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297          65 IGCFVPCDS-A---TIS--------------------VVDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKKC-TENS  117 (185)
Q Consensus        65 ~g~~v~~~~-~---~~~--------------------~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~ia~~l-~~p~  117 (185)
                      ++ |+||++ .   ..+                    .++++++.+++.  +..++++++||+|||||++||+++ .+|+
T Consensus        80 i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  158 (266)
T 2yz2_A           80 IG-IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD  158 (266)
T ss_dssp             EE-EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EE-EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            56 999974 1   111                    134567888998  888999999999999999999999 9999


Q ss_pred             EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus       159 lllLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  224 (266)
T 2yz2_A          159 ILILDEPLVGLDREGKTDLLRIV-EKWKT-LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME  224 (266)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHH
T ss_pred             EEEEcCccccCCHHHHHHHHHHH-HHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999997777766655555544 66665 38999999999 77788999999999999998887543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1.9e-40  Score=269.26  Aligned_cols=175  Identities=13%  Similarity=0.086  Sum_probs=129.4

Q ss_pred             eEEEcccCCceeeecC-CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHH
Q psy5297           5 TLVLNQCRHPIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFL   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~-~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~   62 (185)
                      .++++++...|   .+ +.+.+++|+||++++|++++|+||||||||||+|+|        |.|             .+.
T Consensus        16 ~l~~~~l~~~y---~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~   92 (271)
T 2ixe_A           16 LVKFQDVSFAY---PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH   92 (271)
T ss_dssp             CEEEEEEEECC---TTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred             eEEEEEEEEEe---CCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHh
Confidence            35666665443   11 125799999999999999999999999999999999        322             123


Q ss_pred             HhhCceecCCCCCc--chhhH-------------------------HHhhc--CcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          63 AQIGCFVPCDSATI--SVVDQ-------------------------IFTRV--GAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        63 ~~~g~~v~~~~~~~--~~~~~-------------------------~l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      .+++ |+||++..+  ++.++                         +++.+  ++....++++.+||+|||||++|||++
T Consensus        93 ~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL  171 (271)
T 2ixe_A           93 TQVA-AVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL  171 (271)
T ss_dssp             HHEE-EECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             ccEE-EEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence            4566 999986322  22222                         22233  455566788999999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .+|++|||||||+|+|+.....+.+.+ ..+.++.|.|||++||+.+....||++++|++|+++..+++++
T Consensus       172 ~~~p~lllLDEPts~LD~~~~~~i~~~l-~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~  242 (271)
T 2ixe_A          172 IRKPRLLILDNATSALDAGNQLRVQRLL-YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ  242 (271)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHH-HHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHH
T ss_pred             hcCCCEEEEECCccCCCHHHHHHHHHHH-HHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence             999999999997776665544444433 5554334899999999944445699999999999998887643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=2.1e-40  Score=266.04  Aligned_cols=158  Identities=9%  Similarity=0.043  Sum_probs=130.0

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H------HHH-------------HHHhhCceecCCCCCc---c---
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G------VSV-------------FLAQIGCFVPCDSATI---S---   77 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G------~i~-------------~~~~~g~~v~~~~~~~---~---   77 (185)
                      .+++|+||++++|++++|+||||||||||+|+| |      .|.             +..+++ |+||++..+   +   
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~e   92 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRA-YLSQQQTPPFATPVWH   92 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEE-EECSCCCCCTTCBHHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEE-EECCCCccCCCCcHHH
Confidence            589999999999999999999999999999999 2      221             234466 999986322   2   


Q ss_pred             -------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe-------EEEEeCCCCCCCcCChhHH
Q psy5297          78 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS-------LVIIDELGRGTSTFDGFGM  136 (185)
Q Consensus        78 -------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~-------llllDEP~~g~~~~d~~~~  136 (185)
                                   .+.++++.+++.+..++++.+||+|||||++||+++ .+|+       ++||||||+|+|+.....+
T Consensus        93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l  172 (249)
T 2qi9_C           93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL  172 (249)
T ss_dssp             HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred             HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence                         134567788998889999999999999999999999 9999       9999999777776665555


Q ss_pred             HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+.+ +.+++ .|.|||++||+ ..+..+||++++|++|+++..+++++
T Consensus       173 ~~~l-~~l~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  219 (249)
T 2qi9_C          173 DKIL-SALSQ-QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE  219 (249)
T ss_dssp             HHHH-HHHHH-TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred             HHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            5544 66665 48999999999 77779999999999999998887643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=4.2e-40  Score=266.76  Aligned_cols=174  Identities=17%  Similarity=0.149  Sum_probs=130.9

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH---------HHH-----------
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV---------SVF-----------   61 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~---------i~~-----------   61 (185)
                      .+.++++++...|     +++.+++|+||++++|++++|+||||||||||+|+| |.         |.+           
T Consensus        18 ~~~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~   92 (267)
T 2zu0_C           18 SHMLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE   92 (267)
T ss_dssp             --CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHH
T ss_pred             CceEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHH
Confidence            3456666665444     346799999999999999999999999999999999 32         111           


Q ss_pred             ---HHhhCceecCCCCCcc-------------------------------hhhHHHhhcCcc-cccccCcC-ccHHHHHH
Q psy5297          62 ---LAQIGCFVPCDSATIS-------------------------------VVDQIFTRVGAA-DSQYRGIS-TFMMEMKE  105 (185)
Q Consensus        62 ---~~~~g~~v~~~~~~~~-------------------------------~~~~~l~~~~l~-~~~~~~~~-~lS~g~~q  105 (185)
                         ...++ |+||++..++                               .++++++.+++. +..++++. +||+||||
T Consensus        93 ~~~~~~i~-~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q  171 (267)
T 2zu0_C           93 DRAGEGIF-MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK  171 (267)
T ss_dssp             HHHHHTEE-EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHH
T ss_pred             HHhhCCEE-EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence               11245 8999863211                               123456677885 46788887 59999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEecc
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~  182 (185)
                      |++|||++ .+|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+ ||++++|++|+++..+++
T Consensus       172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~  249 (267)
T 2zu0_C          172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGV-NSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF  249 (267)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH-HTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence            99999999 999999999996666655544444433 55544 48999999999 666665 899999999999998887


Q ss_pred             CC
Q psy5297         183 TN  184 (185)
Q Consensus       183 ~~  184 (185)
                      ++
T Consensus       250 ~~  251 (267)
T 2zu0_C          250 TL  251 (267)
T ss_dssp             TH
T ss_pred             HH
Confidence            64

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=4.7e-40  Score=264.06  Aligned_cols=171  Identities=13%  Similarity=0.095  Sum_probs=128.3

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH----------HH------------H
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS----------VF------------L   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i----------~~------------~   62 (185)
                      .++++++...|     +++.+++|+||++++|++++|+||||||||||+|+|..+          .+            .
T Consensus         3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~   77 (250)
T 2d2e_A            3 QLEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER   77 (250)
T ss_dssp             EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHH
T ss_pred             eEEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHH
Confidence            46777776544     236799999999999999999999999999999999321          11            1


Q ss_pred             -H-hhCceecCCCCCc---ch------------------------hhHHHhhcCc-ccccccCcCc-cHHHHHHHHHHHH
Q psy5297          63 -A-QIGCFVPCDSATI---SV------------------------VDQIFTRVGA-ADSQYRGIST-FMMEMKETATVIK  111 (185)
Q Consensus        63 -~-~~g~~v~~~~~~~---~~------------------------~~~~l~~~~l-~~~~~~~~~~-lS~g~~q~~~ia~  111 (185)
                       . .++ |+||++..+   ++                        +.++++.+++ .+..++++++ ||+|||||++|||
T Consensus        78 ~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAr  156 (250)
T 2d2e_A           78 ARKGLF-LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQ  156 (250)
T ss_dssp             HHTTBC-CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred             HhCcEE-EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence             1 134 889876322   11                        2345666788 4778899999 9999999999999


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEeccC
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++ .+|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+ ||++++|++|+++..++++
T Consensus       157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          157 LLVLEPTYAVLDETDSGLDIDALKVVARGV-NAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             HHHHCCSEEEEECGGGTTCHHHHHHHHHHH-HHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             HHHcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            99 999999999997776665555554433 56654 58999999999 667777 5999999999999888653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=4.4e-40  Score=263.86  Aligned_cols=172  Identities=14%  Similarity=0.113  Sum_probs=128.3

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++++...|   .++.+.+++|+||++++|++++|+||||||||||+|+|        |.|             .+..+
T Consensus         8 ~~~~~l~~~y---~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~   84 (247)
T 2ff7_A            8 ITFRNIRFRY---KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ   84 (247)
T ss_dssp             EEEEEEEEES---STTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             eeEEEEEEEe---CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence            5566665433   11236799999999999999999999999999999999        322             12345


Q ss_pred             hCceecCCCCCc--ch---------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATI--SV---------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~--~~---------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..+  ++               +.++++.+++.+.           .++++++||+|||||++|||++ .+
T Consensus        85 i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~  163 (247)
T 2ff7_A           85 VG-VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  163 (247)
T ss_dssp             EE-EECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             EE-EEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence            66 999987322  22               2233444455433           3445689999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+|+|+.....+.+.+ ..+.  .|.|||++||+.+....||++++|++|+++..+++++
T Consensus       164 p~lllLDEPts~LD~~~~~~i~~~l-~~~~--~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~  229 (247)
T 2ff7_A          164 PKILIFDEATSALDYESEHVIMRNM-HKIC--KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKE  229 (247)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHH-HHHH--TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHH
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999997777666655555544 5553  3899999999944445699999999999999887643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=1.8e-40  Score=265.38  Aligned_cols=170  Identities=18%  Similarity=0.164  Sum_probs=131.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~   64 (185)
                      ++++++...|   . +.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+             ..+
T Consensus         2 l~~~~l~~~y---~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T 1mv5_A            2 LSARHVDFAY---D-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ   77 (243)
T ss_dssp             EEEEEEEECS---S-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred             EEEEEEEEEe---C-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence            5666666544   1 235799999999999999999999999999999999        44433             123


Q ss_pred             hCceecCCCCCc--ch----------------hhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-C
Q psy5297          65 IGCFVPCDSATI--SV----------------VDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        65 ~g~~v~~~~~~~--~~----------------~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      ++ |+||++..+  ++                +.++++.+++.+..           ++++++||+|||||++|||++ .
T Consensus        78 i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~  156 (243)
T 1mv5_A           78 IG-FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR  156 (243)
T ss_dssp             CC-EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             EE-EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence            55 999986322  21                23344455555443           345689999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +|+++||||||+|+|+.....+.+.+ ..++  .+.|||++||+.+....||++++|++|+++..++++
T Consensus       157 ~p~lllLDEPts~LD~~~~~~i~~~l-~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~  222 (243)
T 1mv5_A          157 NPKILMLDEATASLDSESESMVQKAL-DSLM--KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHN  222 (243)
T ss_dssp             CCSEEEEECCSCSSCSSSCCHHHHHH-HHHH--TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHH-HHhc--CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999999999998888777755 5665  389999999994444579999999999998777654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=3.5e-41  Score=267.41  Aligned_cols=172  Identities=13%  Similarity=0.097  Sum_probs=124.7

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI   76 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~   76 (185)
                      .++++++...|   .++.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+.++++ |+||++..+
T Consensus         6 ~l~~~~l~~~y---~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~-~v~q~~~~~   81 (229)
T 2pze_A            6 EVVMENVTAFW---EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQFSWIM   81 (229)
T ss_dssp             EEEEEEEEECS---STTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSSCCCC
T ss_pred             eEEEEEEEEEe---CCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEE-EEecCCccc
Confidence            46777776544   22346799999999999999999999999999999999        5555555667 999987332


Q ss_pred             --chhhH--------------HHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297          77 --SVVDQ--------------IFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT  128 (185)
Q Consensus        77 --~~~~~--------------~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~  128 (185)
                        ++.++              +++.+++.+.           .++++.+||+|||||++|||++ .+|+++||||||+|+
T Consensus        82 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~L  161 (229)
T 2pze_A           82 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL  161 (229)
T ss_dssp             SBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTS
T ss_pred             CCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCC
Confidence              32222              2223333322           2334589999999999999999 999999999995555


Q ss_pred             CcCChhHHHHHHHHHH-Hh-cCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         129 STFDGFGMACSIAREL-AS-NRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       129 ~~~d~~~~~~~il~~l-~~-~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                         |.......+ +.+ .+ ..+.|||++||+.+....||++++|++|+++..+++++
T Consensus       162 ---D~~~~~~i~-~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~  215 (229)
T 2pze_A          162 ---DVLTEKEIF-ESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE  215 (229)
T ss_dssp             ---CHHHHHHHH-HHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             ---CHHHHHHHH-HHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence               544443322 322 11 13789999999944445699999999999998887643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=1.5e-39  Score=267.90  Aligned_cols=172  Identities=16%  Similarity=0.178  Sum_probs=129.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++++...|-    +.+.+|+|+||++++|++++|+||||||||||+|+|        |.|             .++.
T Consensus        53 ~i~~~~vs~~y~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~  128 (306)
T 3nh6_A           53 RIEFENVHFSYA----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS  128 (306)
T ss_dssp             CEEEEEEEEESS----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred             eEEEEEEEEEcC----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhc
Confidence            366666654441    236799999999999999999999999999999999        333             2345


Q ss_pred             hhCceecCCCCCcc--hhh---------------HHHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATIS--VVD---------------QIFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~~~---------------~~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ |+||++..++  +.+               ++++..++           +....++..+||||||||++|||++ .
T Consensus       129 ~i~-~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~  207 (306)
T 3nh6_A          129 HIG-VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK  207 (306)
T ss_dssp             TEE-EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             ceE-EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence            667 9999984432  222               22333333           2334566689999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|++|||||||+++|+.....+.+.+ ..+.+  +.|+|++||+......||++++|++|+++..|++++
T Consensus       208 ~p~iLlLDEPts~LD~~~~~~i~~~l-~~l~~--~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~e  274 (306)
T 3nh6_A          208 APGIILLDEATSALDTSNERAIQASL-AKVCA--NRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEA  274 (306)
T ss_dssp             CCSEEEEECCSSCCCHHHHHHHHHHH-HHHHT--TSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHH-HHHcC--CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence            99999999997777666555554443 55543  689999999944444599999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=9.6e-41  Score=266.20  Aligned_cols=174  Identities=11%  Similarity=0.106  Sum_probs=125.5

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCC-
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSAT-   75 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~-   75 (185)
                      .++++++...|   .++.+.+++|+||++++|++++|+||||||||||+|+|        |.|.+.++++ |+||++.. 
T Consensus         3 ~l~~~~l~~~y---~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~~~   78 (237)
T 2cbz_A            3 SITVRNATFTW---ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA-YVPQQAWIQ   78 (237)
T ss_dssp             CEEEEEEEEES---CTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEE-EECSSCCCC
T ss_pred             eEEEEEEEEEe---CCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEE-EEcCCCcCC
Confidence            36777776544   21235799999999999999999999999999999999        5555555667 99998732 


Q ss_pred             -cchhhH--------------HHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297          76 -ISVVDQ--------------IFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT  128 (185)
Q Consensus        76 -~~~~~~--------------~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~  128 (185)
                       .++.++              +.+.+++.           ...++++.+||+|||||++|||++ .+|+++||||||+|+
T Consensus        79 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L  158 (237)
T 2cbz_A           79 NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV  158 (237)
T ss_dssp             SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTS
T ss_pred             CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence             222222              22222221           124678899999999999999999 999999999995555


Q ss_pred             CcCChhHHHHHHH--HHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         129 STFDGFGMACSIA--RELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       129 ~~~d~~~~~~~il--~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+.....+.+.+.  ..+ . .+.|+|++||+.+....||++++|++|+++..+++++
T Consensus       159 D~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~  214 (237)
T 2cbz_A          159 DAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQE  214 (237)
T ss_dssp             CHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHH
T ss_pred             CHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            4433333332221  111 2 4889999999933345799999999999998887653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=2e-39  Score=255.04  Aligned_cols=161  Identities=12%  Similarity=0.148  Sum_probs=127.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhCce
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIGCF   68 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g~~   68 (185)
                      .++++++...|     +. .+++|+||++++|++++|+||||||||||+|+|        |.|.+        ...++ |
T Consensus        10 ~l~~~~ls~~y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~-~   82 (214)
T 1sgw_A           10 KLEIRDLSVGY-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF-F   82 (214)
T ss_dssp             EEEEEEEEEES-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEE-E
T ss_pred             eEEEEEEEEEe-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEE-E
Confidence            45666665444     23 799999999999999999999999999999999        33332        23455 9


Q ss_pred             ecCCCCCc---ch-------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          69 VPCDSATI---SV-------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        69 v~~~~~~~---~~-------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      +||++..+   ++                   ++++++.+++.+. ++++++||+|||||++||+++ .+|+++||||||
T Consensus        83 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt  161 (214)
T 1sgw_A           83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  161 (214)
T ss_dssp             ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             EeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            99986322   21                   2345677888877 899999999999999999999 999999999998


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE  176 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i  176 (185)
                      +|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||+++.+ .|++
T Consensus       162 s~LD~~~~~~l~~~l-~~~~~-~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          162 VAIDEDSKHKVLKSI-LEILK-EKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             TTSCTTTHHHHHHHH-HHHHH-HHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             cCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            888888877776655 66665 38999999999 7888899998866 4555

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=7.9e-39  Score=258.32  Aligned_cols=173  Identities=12%  Similarity=0.084  Sum_probs=127.2

Q ss_pred             eEEEcccCCceeeecCC-ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHH-------------HHH
Q psy5297           5 TLVLNQCRHPIVELQGG-VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSV-------------FLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~-~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~-------------~~~   63 (185)
                      .+++++++..|   .+. .+.+++|+||++++|++++|+||||||||||+|+|       |.|.             +..
T Consensus        17 ~l~i~~l~~~y---~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~   93 (260)
T 2ghi_A           17 NIEFSDVNFSY---PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRS   93 (260)
T ss_dssp             CEEEEEEEECC---TTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHT
T ss_pred             eEEEEEEEEEe---CCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhc
Confidence            46677776544   111 14699999999999999999999999999999999       3221             233


Q ss_pred             hhCceecCCCCCc--chhh---------------HHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATI--SVVD---------------QIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~--~~~~---------------~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ |+||++..+  ++.+               ++++.+++.+.           .++++.+||+|||||++|||++ .
T Consensus        94 ~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~  172 (260)
T 2ghi_A           94 IIG-IVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK  172 (260)
T ss_dssp             TEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred             cEE-EEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence            456 999987332  2222               23333444322           2456789999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+|+|+.....+.+.+ ..++  .+.|||++||+.+....||++++|++|+++..+++++
T Consensus       173 ~p~lllLDEPts~LD~~~~~~i~~~l-~~l~--~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~  239 (260)
T 2ghi_A          173 DPKIVIFDEATSSLDSKTEYLFQKAV-EDLR--KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD  239 (260)
T ss_dssp             CCSEEEEECCCCTTCHHHHHHHHHHH-HHHT--TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHH-HHhc--CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999997776665555444433 5554  3789999999944345699999999999998887643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=274.84  Aligned_cols=173  Identities=12%  Similarity=0.091  Sum_probs=133.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHH-------------HHHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSV-------------FLAQ   64 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~-------------~~~~   64 (185)
                      .++++++...|   .++...+++|+||++++||+++|+||||||||||||+|       |.|.             ++.+
T Consensus        19 ~i~~~~l~~~y---~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~   95 (390)
T 3gd7_A           19 QMTVKDLTAKY---TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKA   95 (390)
T ss_dssp             CEEEEEEEEES---SSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHT
T ss_pred             eEEEEEEEEEe---cCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCC
Confidence            46666665544   22346799999999999999999999999999999999       2221             2345


Q ss_pred             hCceecCCCCCcc----------------hhhHHHhhcCcccccccCcCc-----------cHHHHHHHHHHHHhC-CCC
Q psy5297          65 IGCFVPCDSATIS----------------VVDQIFTRVGAADSQYRGIST-----------FMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~~~~~~~-----------lS~g~~q~~~ia~~l-~~p  116 (185)
                      ++ |+||++..++                .+.++++.+++.+..++.+.+           ||||||||++|||++ .+|
T Consensus        96 ig-~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P  174 (390)
T 3gd7_A           96 FG-VIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  174 (390)
T ss_dssp             EE-EESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred             EE-EEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence            66 9999874432                244567788888888898888           999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +++|||||++++|+.....+...+ +.+.  .+.|+|++||+.+....|||+++|++|+++..+++++
T Consensus       175 ~lLLLDEPts~LD~~~~~~l~~~l-~~~~--~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~e  239 (390)
T 3gd7_A          175 KILLLDEPSAHLDPVTYQIIRRTL-KQAF--ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE  239 (390)
T ss_dssp             CEEEEESHHHHSCHHHHHHHHHHH-HTTT--TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHH
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHH-HHHh--CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999995555443333332222 3222  4789999999966666799999999999999988754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.6e-38  Score=257.02  Aligned_cols=172  Identities=12%  Similarity=0.103  Sum_probs=129.6

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH------HHHHH---------hhCc-e
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV------SVFLA---------QIGC-F   68 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~------i~~~~---------~~g~-~   68 (185)
                      ++++++...|-.. ++.+.+++|+||+++ |++++|+||||||||||+|+| |.      |.+..         +..+ |
T Consensus         2 l~~~~l~~~y~~~-~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~   79 (263)
T 2pjz_A            2 IQLKNVGITLSGK-GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTN   79 (263)
T ss_dssp             EEEEEEEEEEEEE-TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred             EEEEEEEEEeCCC-CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEE
Confidence            5566665544110 011579999999999 999999999999999999999 32      22211         1224 8


Q ss_pred             ecCCCCC-cc-----------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297          69 VPCDSAT-IS-----------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT  128 (185)
Q Consensus        69 v~~~~~~-~~-----------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~  128 (185)
                      +||++.. .+                 .++++++.+++. +..++++++||+|||||++||+++ .+|+++||||||+| 
T Consensus        80 v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~-  158 (263)
T 2pjz_A           80 LPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN-  158 (263)
T ss_dssp             CGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT-
T ss_pred             eCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc-
Confidence            8887632 12                 234567888998 889999999999999999999999 99999999999555 


Q ss_pred             CcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhc-cccceeeeeEEEEeccCC
Q psy5297         129 STFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSR-VIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d-~~~~l~~g~i~~~~~~~~  184 (185)
                        +|.....+. .+.+.+... |+|++||+ .++.++|| ++++|++|+++..+++++
T Consensus       159 --LD~~~~~~l-~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~  212 (263)
T 2pjz_A          159 --VDAARRHVI-SRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSE  212 (263)
T ss_dssp             --CCHHHHHHH-HHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred             --cCHHHHHHH-HHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHH
Confidence              554444442 244444223 99999999 77788999 999999999999887654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=2.7e-39  Score=264.82  Aligned_cols=159  Identities=14%  Similarity=0.114  Sum_probs=115.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc--chhhHH----------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI--SVVDQI----------   82 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~--~~~~~~----------   82 (185)
                      +.+++|+||++++|++++|+||||||||||+|+|        |.|.+.++++ |+||++..+  ++.+++          
T Consensus        51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~  129 (290)
T 2bbs_A           51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQNSWIMPGTIKENIIGVSYDEYRY  129 (290)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEE-EECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred             ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEE-EEeCCCccCcccHHHHhhCcccchHHH
Confidence            5699999999999999999999999999999999        5555555667 999987332  333333          


Q ss_pred             ---HhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc
Q psy5297          83 ---FTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASN  147 (185)
Q Consensus        83 ---l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~  147 (185)
                         ++.+++.+..           ++++.+||+|||||++|||++ .+|+++||||||+|+|+.....+.+.++..+ . 
T Consensus       130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~-~-  207 (290)
T 2bbs_A          130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-M-  207 (290)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC-T-
T ss_pred             HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh-h-
Confidence               2223333222           233579999999999999999 9999999999966555444333322111122 2 


Q ss_pred             CCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         148 RQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       148 ~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+.|||++||+.+....||++++|++|+++..+++++
T Consensus       208 ~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~  244 (290)
T 2bbs_A          208 ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE  244 (290)
T ss_dssp             TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHH
Confidence            3789999999944445799999999999998887653

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=100.00  E-value=1.2e-36  Score=280.59  Aligned_cols=182  Identities=54%  Similarity=0.948  Sum_probs=157.2

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHH
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI   82 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~   82 (185)
                      .+.+.+++++||+++...+.+++++|++|++++|++++|+||||||||||||++|.+.+.++.|+|+|+....++.++.+
T Consensus       629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i  708 (934)
T 3thx_A          629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCI  708 (934)
T ss_dssp             SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEE
T ss_pred             CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHH
Confidence            45799999999999865556789999999999999999999999999999999999999999999999988778888999


Q ss_pred             HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297          83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA  162 (185)
Q Consensus        83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~  162 (185)
                      +.++++.+...+..++||+||++++.+++++.+|+++|||||++|||+.++..+.+.+++.+.++.|+++|++||+.++.
T Consensus       709 ~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~  788 (934)
T 3thx_A          709 LARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT  788 (934)
T ss_dssp             EEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred             HHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence            99999998889999999999999999999889999999999999999999998877777888764599999999998888


Q ss_pred             HhhccccceeeeeEEEEeccCC
Q psy5297         163 LLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       163 ~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+||++..+++|++...++.++
T Consensus       789 ~lad~~~~v~ng~v~~~~~~~~  810 (934)
T 3thx_A          789 ALANQIPTVNNLHVTALTTEET  810 (934)
T ss_dssp             GGGGTCTTEEEEEEEEEEETTE
T ss_pred             HHhcccceeEeeEEEEEecCCc
Confidence            9999999999999998877654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.7e-36  Score=269.09  Aligned_cols=172  Identities=17%  Similarity=0.189  Sum_probs=130.5

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|+...|-   ++.+++++|+||++++||+++|+||||||||||+|+|        |.|             .++.+
T Consensus       342 i~~~~v~~~y~---~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~  418 (587)
T 3qf4_A          342 VSFENVEFRYF---ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH  418 (587)
T ss_dssp             EEEEEEEECSS---SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred             EEEEEEEEEcC---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence            55555554331   2346799999999999999999999999999999999        333             23566


Q ss_pred             hCceecCCCCCcc--hhhH---------------HHhhc-----------CcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS--VVDQ---------------IFTRV-----------GAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~~~~---------------~l~~~-----------~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ |+||++..++  +.++               .++..           |++...+++..+||||||||++|||++ .+
T Consensus       419 i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~  497 (587)
T 3qf4_A          419 IS-AVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK  497 (587)
T ss_dssp             EE-EECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred             eE-EECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence            77 9999984432  2222               22222           334445677889999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|+.....+.+.+ +.+.  .++|+|++||+......||++++|++|++++.|++++
T Consensus       498 p~illlDEpts~LD~~~~~~i~~~l-~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~e  563 (587)
T 3qf4_A          498 PKVLILDDCTSSVDPITEKRILDGL-KRYT--KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE  563 (587)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHH-HHHS--TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHH-HHhC--CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999997776665555554443 4443  4899999999955567899999999999999998765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=2.1e-36  Score=268.18  Aligned_cols=158  Identities=13%  Similarity=0.112  Sum_probs=122.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCc--ch-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATI--SV-   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~--~~-   78 (185)
                      +++++|+||++++|++++|+||||||||||+|+|        |.|.             ++.+++ |+||++..+  ++ 
T Consensus       356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~  434 (582)
T 3b5x_A          356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA-LVSQNVHLFNDTIA  434 (582)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE-EEcCCCccccccHH
Confidence            5799999999999999999999999999999999        3332             233566 999987322  22 


Q ss_pred             ---------------hhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297          79 ---------------VDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF  131 (185)
Q Consensus        79 ---------------~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~  131 (185)
                                     +.++++.+++.+..           .++..+||||||||++|||++ .+|+++||||||+++|+.
T Consensus       435 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~  514 (582)
T 3b5x_A          435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE  514 (582)
T ss_pred             HHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence                           23344455554433           344589999999999999999 999999999997777666


Q ss_pred             ChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       132 d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ....+.+.+ +.+.  .|+|+|++||+.+..+.||++++|++|++++.|++++
T Consensus       515 ~~~~i~~~l-~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~  564 (582)
T 3b5x_A          515 SERAIQAAL-DELQ--KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHAD  564 (582)
T ss_pred             HHHHHHHHH-HHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            555554433 4554  3899999999954456799999999999999988764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.4e-36  Score=270.14  Aligned_cols=172  Identities=13%  Similarity=0.126  Sum_probs=129.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|++..|-    +.+++++|+||++++|++++|+||||||||||+|+|        |.|             .++.
T Consensus       354 ~i~~~~v~~~y~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~  429 (598)
T 3qf4_B          354 EIEFKNVWFSYD----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS  429 (598)
T ss_dssp             CEEEEEEECCSS----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             eEEEEEEEEECC----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence            356666655441    235699999999999999999999999999999999        333             2345


Q ss_pred             hhCceecCCCCCc--chhhH---------------HHhhcCcccccccC-----------cCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATI--SVVDQ---------------IFTRVGAADSQYRG-----------ISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~--~~~~~---------------~l~~~~l~~~~~~~-----------~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ |+||++..+  ++.++               +++..++.+..++.           ..+||||||||++|||++ .
T Consensus       430 ~i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~  508 (598)
T 3qf4_B          430 SIG-IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA  508 (598)
T ss_dssp             HEE-EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred             ceE-EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            677 999998433  33332               33333443333333           368999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+.+.+ ..+.  .|+|+|++||+....+.||++++|++|++++.|++++
T Consensus       509 ~p~illlDEpts~LD~~~~~~i~~~l-~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~  575 (598)
T 3qf4_B          509 NPKILILDEATSNVDTKTEKSIQAAM-WKLM--EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE  575 (598)
T ss_dssp             CCSEEEECCCCTTCCHHHHHHHHHHH-HHHH--TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHH
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHH-HHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence            99999999997777666655555544 5554  3899999999944445699999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=2e-36  Score=268.31  Aligned_cols=172  Identities=15%  Similarity=0.101  Sum_probs=128.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|+...|   .++.+++++|+||++++|++++|+||||||||||+|+|        |.|             .++.+
T Consensus       342 i~~~~v~~~y---~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b60_A          342 LEFRNVTFTY---PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ  418 (582)
T ss_dssp             EEEEEEEECS---SSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred             EEEEEEEEEc---CCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence            5555554433   11125799999999999999999999999999999999        322             23445


Q ss_pred             hCceecCCCCCc--ch----------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-C
Q psy5297          65 IGCFVPCDSATI--SV----------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        65 ~g~~v~~~~~~~--~~----------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      ++ |+||++..+  ++                +.++++.+++.+.           ..++..+||||||||++|||++ .
T Consensus       419 i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~  497 (582)
T 3b60_A          419 VA-LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_dssp             EE-EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             Ce-EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence            66 999987322  22                2233444444333           3345689999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+.+.+ +.+.+  |+|+|++||+.+..+.||++++|++|++++.|++++
T Consensus       498 ~p~illlDEpts~LD~~~~~~i~~~l-~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~  564 (582)
T 3b60_A          498 DSPILILDEATSALDTESERAIQAAL-DELQK--NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE  564 (582)
T ss_dssp             CCSEEEEETTTSSCCHHHHHHHHHHH-HHHHT--TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHH-HHHhC--CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            99999999997777666655555543 55543  899999999944446799999999999999988754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=1.6e-36  Score=268.84  Aligned_cols=173  Identities=18%  Similarity=0.134  Sum_probs=127.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|++..|-   ++.+++++|+||++++|++++|+||||||||||+|+|        |.|             .++.
T Consensus       339 ~i~~~~v~~~y~---~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~  415 (578)
T 4a82_A          339 RIDIDHVSFQYN---DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN  415 (578)
T ss_dssp             CEEEEEEEECSC---SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             eEEEEEEEEEcC---CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence            355555554431   2235799999999999999999999999999999999        333             2345


Q ss_pred             hhCceecCCCCCc--chhhH---------------HHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATI--SVVDQ---------------IFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~--~~~~~---------------~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ |+||++..+  ++.++               .++..++.+           ...++..+||||||||++|||++ .
T Consensus       416 ~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~  494 (578)
T 4a82_A          416 QIG-LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  494 (578)
T ss_dssp             TEE-EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             heE-EEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence            667 999998433  33222               233333322           23445578999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+.+. ++.+.  .+.|+|++||+.+..+.||++++|++|++++.|++++
T Consensus       495 ~p~illlDEpts~LD~~~~~~i~~~-l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~e  561 (578)
T 4a82_A          495 NPPILILDEATSALDLESESIIQEA-LDVLS--KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRE  561 (578)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHH-HHHHT--TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHH-HHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence            9999999999777666544444333 34553  3789999999944446699999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1e-36  Score=268.08  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=126.2

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCC---cch--------------
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSAT---ISV--------------   78 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~---~~~--------------   78 (185)
                      ..+++++|++++||+++|+||||||||||+|+|        |.|.+...++ |+||+...   .++              
T Consensus       300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~-~v~Q~~~~~~~~tv~~~~~~~~~~~~~~  378 (538)
T 1yqt_A          300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA-YKPQYIKADYEGTVYELLSKIDASKLNS  378 (538)
T ss_dssp             EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEE-EECSSCCCCCSSBHHHHHHHHHHHHHTC
T ss_pred             EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEE-EEecCCcCCCCCcHHHHHHhhhccCCCH
Confidence            357778888899999999999999999999999        4444433455 99998622   221              


Q ss_pred             ---hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEE
Q psy5297          79 ---VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLF  154 (185)
Q Consensus        79 ---~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii  154 (185)
                         ++++++.+++.+..++++.+||||||||++||+++ .+|++|||||||+|+|......+.+.+ +.+.++.|.|||+
T Consensus       379 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l-~~l~~~~g~tvi~  457 (538)
T 1yqt_A          379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI-RHLMEKNEKTALV  457 (538)
T ss_dssp             HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH-HHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhCCCEEEE
Confidence               23456677888888999999999999999999999 999999999997776666555555544 5555335899999


Q ss_pred             ecCh-hHHHHhhccccceee--eeEEEEeccCC
Q psy5297         155 ATHF-HEIALLSRVIPTFRN--VHESKYLYHTN  184 (185)
Q Consensus       155 ~tH~-~~~~~~~d~~~~l~~--g~i~~~~~~~~  184 (185)
                      +||| .++..+|||+++|++  |++...+++++
T Consensus       458 vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~  490 (538)
T 1yqt_A          458 VEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMG  490 (538)
T ss_dssp             ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             EeCCHHHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence            9999 888899999999986  67777777654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=2e-36  Score=269.24  Aligned_cols=159  Identities=14%  Similarity=0.160  Sum_probs=127.4

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCC---cch--------------
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSAT---ISV--------------   78 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~---~~~--------------   78 (185)
                      ..+++++|++++||+++|+||||||||||+|+|        |.|.+...++ |+||+...   .++              
T Consensus       370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~-~v~Q~~~~~~~~tv~e~~~~~~~~~~~~  448 (607)
T 3bk7_A          370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA-YKPQYIKAEYEGTVYELLSKIDSSKLNS  448 (607)
T ss_dssp             CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEE-EECSSCCCCCSSBHHHHHHHHHHHHHHC
T ss_pred             eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEE-EEecCccCCCCCcHHHHHHhhhccCCCH
Confidence            367888888999999999999999999999999        4454433456 99998622   221              


Q ss_pred             ---hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEE
Q psy5297          79 ---VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLF  154 (185)
Q Consensus        79 ---~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii  154 (185)
                         +.++++.+++.+..++++++||||||||++||+++ .+|++|||||||+|+|+.....+.+.+ +.+.++.|.|||+
T Consensus       449 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tvi~  527 (607)
T 3bk7_A          449 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI-RHLMEKNEKTALV  527 (607)
T ss_dssp             HHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH-HHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEE
Confidence               23456778888888999999999999999999999 999999999997776666555555544 6665436899999


Q ss_pred             ecCh-hHHHHhhccccceee--eeEEEEeccCC
Q psy5297         155 ATHF-HEIALLSRVIPTFRN--VHESKYLYHTN  184 (185)
Q Consensus       155 ~tH~-~~~~~~~d~~~~l~~--g~i~~~~~~~~  184 (185)
                      +||| .++..+|||+++|++  |++...+++++
T Consensus       528 vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~  560 (607)
T 3bk7_A          528 VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG  560 (607)
T ss_dssp             ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             EeCCHHHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence            9999 788889999999986  67777777654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-35  Score=261.03  Aligned_cols=150  Identities=15%  Similarity=0.135  Sum_probs=118.8

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCC---cc---------------
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSAT---IS---------------   77 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~---~~---------------   77 (185)
                      ..+.+.||++++||+++|+||||||||||+|+|        |.|.+.....+|+||....   .+               
T Consensus       282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  361 (538)
T 3ozx_A          282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALST  361 (538)
T ss_dssp             EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCT
T ss_pred             EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccch
Confidence            356667788999999999999999999999999        4443332222378876421   11               


Q ss_pred             ---hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEE
Q psy5297          78 ---VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTL  153 (185)
Q Consensus        78 ---~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vi  153 (185)
                         .++++++.+++.+..++++++||||||||++|||++ .+|++|||||||+|+|+.....+.+.+ +.++++.|.|||
T Consensus       362 ~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l-~~l~~~~g~tvi  440 (538)
T 3ozx_A          362 SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI-KRVTRERKAVTF  440 (538)
T ss_dssp             TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH-HHHHHHTTCEEE
T ss_pred             hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEE
Confidence               134566778888889999999999999999999999 999999999997776666655555544 666554689999


Q ss_pred             EecCh-hHHHHhhccccceeee
Q psy5297         154 FATHF-HEIALLSRVIPTFRNV  174 (185)
Q Consensus       154 i~tH~-~~~~~~~d~~~~l~~g  174 (185)
                      ++||| .++..+|||+++|+++
T Consensus       441 ~vsHdl~~~~~~aDri~vl~~~  462 (538)
T 3ozx_A          441 IIDHDLSIHDYIADRIIVFKGE  462 (538)
T ss_dssp             EECSCHHHHHHHCSEEEEEEEE
T ss_pred             EEeCCHHHHHHhCCEEEEEeCC
Confidence            99999 8888899999999874

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=100.00  E-value=6.3e-35  Score=268.57  Aligned_cols=177  Identities=41%  Similarity=0.715  Sum_probs=150.0

Q ss_pred             CceEEEcccCCceeee--cCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhh
Q psy5297           3 TGTLVLNQCRHPIVEL--QGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVD   80 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~--~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~   80 (185)
                      ++.+.+++.+||+++.  ..+.++|++|++|++++|++++|+||||||||||||++|.+.+.++.|.++|+....++.++
T Consensus       638 ~~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d  717 (918)
T 3thx_B          638 ERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD  717 (918)
T ss_dssp             SCEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS
T ss_pred             CCcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH
Confidence            3468999999999873  22457899999999999999999999999999999999999999999999999887778888


Q ss_pred             HHHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297          81 QIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE  160 (185)
Q Consensus        81 ~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~  160 (185)
                      .++.++++.+......++||+||+|++.+++++.+|+++|||||++|||+.++..+.+.+++.+.++.|+++|++||+.+
T Consensus       718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e  797 (918)
T 3thx_B          718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP  797 (918)
T ss_dssp             EEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence            89999999999999999999999999999999999999999999999999999998877778886546999999999988


Q ss_pred             HHHhhccccc-eeeeeEEEE
Q psy5297         161 IALLSRVIPT-FRNVHESKY  179 (185)
Q Consensus       161 ~~~~~d~~~~-l~~g~i~~~  179 (185)
                      +.++||+... +.++++.+.
T Consensus       798 l~~l~~~~~~~v~n~~~~~~  817 (918)
T 3thx_B          798 VCELEKNYSHQVGNYHMGFL  817 (918)
T ss_dssp             GGGHHHHTTTTEEEEEEEEE
T ss_pred             HHHHHhhcccceEEEEEEEE
Confidence            8899999874 889998763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=262.82  Aligned_cols=160  Identities=13%  Similarity=0.103  Sum_probs=126.7

Q ss_pred             eeeeceEEEeeCCc-----eeEEEEccCCCcHHHHHHHH-HHHHH-------HHhhCceecCCCCC---cc---------
Q psy5297          23 SYIPNDVYFKSGEV-----SFNLVTGPNMGGKSTYIRSI-GVSVF-------LAQIGCFVPCDSAT---IS---------   77 (185)
Q Consensus        23 ~~il~~isl~i~~g-----~~~~l~G~NGsGKSTLlk~i-G~i~~-------~~~~g~~v~~~~~~---~~---------   77 (185)
                      ..+++|+||++.+|     |+++|+||||||||||+|+| |....       ...++ |+||....   .+         
T Consensus       360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~-~~~q~~~~~~~~tv~e~~~~~~  438 (608)
T 3j16_B          360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS-MKPQKIAPKFPGTVRQLFFKKI  438 (608)
T ss_dssp             EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEE-EECSSCCCCCCSBHHHHHHHHC
T ss_pred             ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEE-EecccccccCCccHHHHHHHHh
Confidence            35789999999999     77999999999999999999 22110       11234 78876421   11         


Q ss_pred             --------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC
Q psy5297          78 --------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNR  148 (185)
Q Consensus        78 --------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~  148 (185)
                              ..+++++.+++.+..++++++||||||||++||+++ .+|++|||||||+|+|+.....+.+.+ +.+.++.
T Consensus       439 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll-~~l~~~~  517 (608)
T 3j16_B          439 RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI-RRFILHN  517 (608)
T ss_dssp             SSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH-HHHHHHH
T ss_pred             hcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHhC
Confidence                    234567788888889999999999999999999999 999999999997777666655555544 5654335


Q ss_pred             CCeEEEecCh-hHHHHhhccccceee--eeEEEEeccCC
Q psy5297         149 QPFTLFATHF-HEIALLSRVIPTFRN--VHESKYLYHTN  184 (185)
Q Consensus       149 ~~~vii~tH~-~~~~~~~d~~~~l~~--g~i~~~~~~~~  184 (185)
                      |.|||++||| .++..+|||+++|++  |++...+++++
T Consensus       518 g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~  556 (608)
T 3j16_B          518 KKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPES  556 (608)
T ss_dssp             TCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHH
Confidence            9999999999 888899999999997  78888888765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=2.6e-34  Score=258.37  Aligned_cols=100  Identities=11%  Similarity=0.072  Sum_probs=84.3

Q ss_pred             HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      ++.+|+.+. .++++++||||||||++|||++ .+|+  +|||||||+|+|+.....+.+.+ +.+++ .|.|||+||||
T Consensus       186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l-~~l~~-~g~tvi~vtHd  263 (670)
T 3ux8_A          186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATL-KSMRD-LGNTLIVVEHD  263 (670)
T ss_dssp             HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHHHH-TTCEEEEECCC
T ss_pred             HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHH-HHHHH-cCCEEEEEeCC
Confidence            556677654 6899999999999999999999 9988  99999998888888777776654 77776 59999999999


Q ss_pred             hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         159 HEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      .+....||++++|      ++|++++.+++++
T Consensus       264 ~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~  295 (670)
T 3ux8_A          264 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEE  295 (670)
T ss_dssp             HHHHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred             HHHHhhCCEEEEecccccccCCEEEEecCHHH
Confidence            5556679999999      8999999997654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=100.00  E-value=1.3e-33  Score=257.49  Aligned_cols=179  Identities=42%  Similarity=0.671  Sum_probs=147.0

Q ss_pred             CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHH
Q psy5297           3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI   82 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~   82 (185)
                      ++.+.+++++||+++...+.+++++|++|+ ++|++++|+||||||||||||+|+.+.+.++.|.++|+....++.++++
T Consensus       575 ~~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i  653 (800)
T 1wb9_A          575 KPGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI  653 (800)
T ss_dssp             SSCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE
T ss_pred             CCCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH
Confidence            456899999999987433457899999999 9999999999999999999999988888899998999877667777778


Q ss_pred             HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297          83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA  162 (185)
Q Consensus        83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~  162 (185)
                      +..++..+......++||.+|++...+++.+.+|+++|||||++||++.|+..+.+.+++.+.++.|.++|++||+.++.
T Consensus       654 ~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~  733 (800)
T 1wb9_A          654 FTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  733 (800)
T ss_dssp             EEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             HhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH
Confidence            88888888888888999999998888887779999999999999999999998866677888763589999999997777


Q ss_pred             HhhccccceeeeeEEEEecc
Q psy5297         163 LLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       163 ~~~d~~~~l~~g~i~~~~~~  182 (185)
                      .+||++..+.++++......
T Consensus       734 ~l~d~~~~v~n~~~~~~~~~  753 (800)
T 1wb9_A          734 QLPEKMEGVANVHLDALEHG  753 (800)
T ss_dssp             GHHHHSTTEEEEEEEEEEET
T ss_pred             HHhhhhhceEEEEEEEEEcC
Confidence            89999999999999876544

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=100.00  E-value=1.2e-33  Score=262.95  Aligned_cols=174  Identities=41%  Similarity=0.649  Sum_probs=141.2

Q ss_pred             CceEEEcccCCceeeecC-CceeeeceEEEeeCC-------ceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCC
Q psy5297           3 TGTLVLNQCRHPIVELQG-GVSYIPNDVYFKSGE-------VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA   74 (185)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~-~~~~il~~isl~i~~-------g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~   74 (185)
                      ++.+++++++||.++..- +.+++++|++|++++       |++++|+||||||||||||++|.+.+++++|+||||...
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~  827 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC  827 (1022)
T ss_dssp             CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEE
T ss_pred             CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcC
Confidence            456999999999987543 457899999999987       899999999999999999999999999999999999988


Q ss_pred             CcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEE
Q psy5297          75 TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTL  153 (185)
Q Consensus        75 ~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vi  153 (185)
                      .+++++.++.++|..+......++||++|++ +++++++ .+|+++|||||++|||+.|+..+.+.+++++.++.|+++|
T Consensus       828 ~l~v~d~I~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl  906 (1022)
T 2o8b_B          828 RLTPIDRVFTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTL  906 (1022)
T ss_dssp             EECCCSBEEEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEE
T ss_pred             CCCHHHHHHHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEE
Confidence            8888999999999988888889999999987 6777777 9999999999999999999877777777888864489999


Q ss_pred             EecCh-hHHHHhhccccceeeeeEEE
Q psy5297         154 FATHF-HEIALLSRVIPTFRNVHESK  178 (185)
Q Consensus       154 i~tH~-~~~~~~~d~~~~l~~g~i~~  178 (185)
                      ++||+ ..+..+||++.++ +|++..
T Consensus       907 ~~TH~~el~~~~~d~~~v~-~g~~~~  931 (1022)
T 2o8b_B          907 FSTHYHSLVEDYSQNVAVR-LGHMAC  931 (1022)
T ss_dssp             EECCCHHHHHHTSSCSSEE-EEEEEE
T ss_pred             EEeCCHHHHHHhCCcceee-cCeEEE
Confidence            99999 5556678988775 688873

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=2.2e-33  Score=246.81  Aligned_cols=148  Identities=15%  Similarity=0.116  Sum_probs=117.0

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH---------HHH---------H------hhCceecC
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS---------VFL---------A------QIGCFVPC   71 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i---------~~~---------~------~~g~~v~~   71 (185)
                      +++.|+| ++++||+++|+||||||||||+|+|        |.+         .+.         .      .++ +++|
T Consensus        36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~q  113 (538)
T 1yqt_A           36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV-VKPQ  113 (538)
T ss_dssp             CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCE-EECS
T ss_pred             ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhh-hhhh
Confidence            5899999 9999999999999999999999999        442         110         0      012 5555


Q ss_pred             CCCC------------------cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          72 DSAT------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        72 ~~~~------------------~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                      ....                  ...+.++++.+++.+..++++++||+|||||++||+++ .+|++|||||||+++|+..
T Consensus       114 ~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~  193 (538)
T 1yqt_A          114 YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ  193 (538)
T ss_dssp             CGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred             hhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence            3211                  12456788899999889999999999999999999999 9999999999966655555


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      ...+.+. ++.+++ .|.|||++||+ .++..+||++++|+++.
T Consensus       194 ~~~l~~~-L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~~  235 (538)
T 1yqt_A          194 RLNAARA-IRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGEP  235 (538)
T ss_dssp             HHHHHHH-HHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence            4444443 466766 59999999999 78888999999998653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=3.6e-33  Score=265.96  Aligned_cols=174  Identities=11%  Similarity=0.059  Sum_probs=134.6

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|++..|-..  ...++|+|+||++++|+.++|+||+|||||||+++|        |.|             .++.
T Consensus       415 ~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~  492 (1321)
T 4f4c_A          415 DITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK  492 (1321)
T ss_dssp             CEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred             cEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence            46677776655332  236899999999999999999999999999999999        333             3456


Q ss_pred             hhCceecCCCCCcc--h---------------hhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATIS--V---------------VDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~---------------~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ ||||++..+.  +               +.++++..++.+           ....+-.+||||||||++||||+ .
T Consensus       493 ~i~-~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~  571 (1321)
T 4f4c_A          493 NVA-VVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR  571 (1321)
T ss_dssp             HEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred             ccc-ccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence            778 9999985443  2               223333333322           23345568999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++|||||||++|+.....+.+.+ ..+.+  ++|+|++||.....+.||+|++|++|+|++.|+.++
T Consensus       572 ~~~IliLDE~tSaLD~~te~~i~~~l-~~~~~--~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~e  638 (1321)
T 4f4c_A          572 NPKILLLDEATSALDAESEGIVQQAL-DKAAK--GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRA  638 (1321)
T ss_dssp             CCSEEEEESTTTTSCTTTHHHHHHHH-HHHHT--TSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHH-HHHhC--CCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHH
Confidence            99999999998888877644444444 55554  899999999976778899999999999999998765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.98  E-value=1.2e-33  Score=269.17  Aligned_cols=173  Identities=14%  Similarity=0.106  Sum_probs=129.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|++..|-+  +...+||+|+||+|++||.++|+||+|||||||+++|        |.|             .++.
T Consensus      1076 ~I~f~nVsf~Y~~--~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPE--RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp             CEEEEEEEECCTT--SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred             eEEEEEEEEeCCC--CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence            4677777655522  1235799999999999999999999999999999999        433             3466


Q ss_pred             hhCceecCCCCCcc--h-----------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC
Q psy5297          64 QIGCFVPCDSATIS--V-----------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~-----------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      +++ +|||++..++  +                 +.++++..++.+.           ....-.+||||||||++||||+
T Consensus      1154 ~i~-~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A         1154 QIA-IVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp             TEE-EECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred             heE-EECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence            777 9999984433  2                 2233444444322           2334467999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc-CCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASN-RQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~-~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .+|++||||||||++|+.....+.    +.+.+. .++|+|+++|.......||+|++|++|+|++.|++++
T Consensus      1233 lr~~~ILiLDEaTSaLD~~tE~~Iq----~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A         1233 VRNPKILLLDEATSALDTESEKVVQ----EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp             HSCCSEEEEESCCCSTTSHHHHHHH----HHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHH
T ss_pred             HhCCCEEEEeCccccCCHHHHHHHH----HHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence             999999999996666554433333    333332 4899999999866667799999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.98  E-value=5.1e-33  Score=247.33  Aligned_cols=147  Identities=14%  Similarity=0.122  Sum_probs=116.8

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH---------HHH------------H---hhCceecC
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS---------VFL------------A---QIGCFVPC   71 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i---------~~~------------~---~~g~~v~~   71 (185)
                      +++.|+| ++++|++++|+||||||||||||+|        |.+         .+.            .   .++ +++|
T Consensus       106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~-~~~q  183 (607)
T 3bk7_A          106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV-VKPQ  183 (607)
T ss_dssp             CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCE-EECS
T ss_pred             eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceE-Eeec
Confidence            5899999 9999999999999999999999999        443         110            0   012 4555


Q ss_pred             CCCC------------------cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297          72 DSAT------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD  132 (185)
Q Consensus        72 ~~~~------------------~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d  132 (185)
                      ....                  ...++++++.+++.+..++++++||||||||++||+++ .+|++|||||||+++|+..
T Consensus       184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~  263 (607)
T 3bk7_A          184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ  263 (607)
T ss_dssp             CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred             hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence            3210                  12456788899999999999999999999999999999 9999999999966666655


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeee
Q psy5297         133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNV  174 (185)
Q Consensus       133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g  174 (185)
                      ...+.+. ++.+++ .|.|||++||| ..+..+||++++|+++
T Consensus       264 ~~~l~~~-L~~l~~-~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          264 RLKVARV-IRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHHH-HHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHH-HHHHHh-cCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            5545554 466766 59999999999 7778899999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.98  E-value=1.2e-32  Score=247.50  Aligned_cols=101  Identities=14%  Similarity=0.055  Sum_probs=82.9

Q ss_pred             HHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCC---eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297          82 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TEN---SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT  156 (185)
Q Consensus        82 ~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p---~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t  156 (185)
                      .+..+++.. ..++++.+||||||||++|||++ .+|   ++|||||||+|+|+.+...+.+.+ +.+++ .|.|||++|
T Consensus       526 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l-~~l~~-~g~tvi~vt  603 (670)
T 3ux8_A          526 TLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL-HRLVD-NGDTVLVIE  603 (670)
T ss_dssp             HHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEEC
T ss_pred             HHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHH-CCCEEEEEe
Confidence            345566653 46889999999999999999999 765   699999998887777766666654 67776 599999999


Q ss_pred             ChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         157 HFHEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       157 H~~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      ||.+....||++++|      ++|++++.|++++
T Consensus       604 Hd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~  637 (670)
T 3ux8_A          604 HNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEE  637 (670)
T ss_dssp             CCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred             CCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence            995556789999999      8999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.98  E-value=4e-33  Score=265.13  Aligned_cols=174  Identities=11%  Similarity=0.066  Sum_probs=125.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~   63 (185)
                      .++++|+...|-..  ...++++|+||++++||+++|+||||||||||+++|        |.|.             ++.
T Consensus      1030 ~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp             CEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred             cEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence            36666665544221  124699999999999999999999999999999999        3332             234


Q ss_pred             hhCceecCCCCCc--chhhH-----------------HHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC
Q psy5297          64 QIGCFVPCDSATI--SVVDQ-----------------IFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        64 ~~g~~v~~~~~~~--~~~~~-----------------~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      +++ |+||++..+  ++.++                 .++..++.+.           ..++..+||||||||++|||++
T Consensus      1108 ~i~-~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A         1108 QLG-IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp             SCE-EEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred             ceE-EECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence            556 999998332  22222                 2233333222           2334568999999999999999


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       .+|+++||||||+++|+.....+.+.+ +.+.  .|+|+|++||+.+....|||+++|++|++++.|++++
T Consensus      1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l-~~~~--~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A         1187 VRQPHILLLDEATSALDTESEKVVQEAL-DKAR--EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp             HHCCSSEEEESCSSSCCHHHHHHHHHHH-HHHS--SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHH
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhC--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence             999999999996666665544444433 4432  4899999999933346699999999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.97  E-value=9.7e-33  Score=262.46  Aligned_cols=174  Identities=14%  Similarity=0.103  Sum_probs=125.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|++..|-.  +...++|+|+||++++|++++|+||||||||||+++|        |.|             .++.
T Consensus       387 ~i~~~~v~~~y~~--~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~  464 (1284)
T 3g5u_A          387 NLEFKNIHFSYPS--RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE  464 (1284)
T ss_dssp             CEEEEEEEECCSS--TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             eEEEEEEEEEcCC--CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence            3566666554421  1224799999999999999999999999999999999        333             2345


Q ss_pred             hhCceecCCCCCcc--hhhHH---------------HhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATIS--VVDQI---------------FTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~~~~~---------------l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ ||||++..++  +.+++               ++..++           +....++..+||||||||++|||++ .
T Consensus       465 ~i~-~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~  543 (1284)
T 3g5u_A          465 IIG-VVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR  543 (1284)
T ss_dssp             HEE-EECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred             heE-EEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence            677 9999984332  22222               222222           2223456678999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+.+. ++.+.  .|+|+|++||+......||++++|++|++++.|++++
T Consensus       544 ~p~iliLDEpts~LD~~~~~~i~~~-l~~~~--~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~  610 (1284)
T 3g5u_A          544 NPKILLLDEATSALDTESEAVVQAA-LDKAR--EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDE  610 (1284)
T ss_dssp             CCSEEEEESTTCSSCHHHHHHHHHH-HHHHH--TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH-HHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence            9999999999666555432222222 34433  4899999999944445699999999999999988654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.97  E-value=9e-33  Score=254.80  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=122.4

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--HHHHH-----HHhhCceecCCC----CCcc------------
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--GVSVF-----LAQIGCFVPCDS----ATIS------------   77 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--G~i~~-----~~~~g~~v~~~~----~~~~------------   77 (185)
                      +.+.+++|+||++++|++++|+||||||||||||+|  |.+.-     ....+ |++|+.    ..++            
T Consensus       446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~-~v~q~~~~~~~~ltv~e~l~~~~~~~  524 (986)
T 2iw3_A          446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTV-YVEHDIDGTHSDTSVLDFVFESGVGT  524 (986)
T ss_dssp             TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEE-ETTCCCCCCCTTSBHHHHHHTTCSSC
T ss_pred             CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEE-EEcccccccccCCcHHHHHHHhhcCH
Confidence            346799999999999999999999999999999999  33210     00123 677653    1122            


Q ss_pred             --hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEE
Q psy5297          78 --VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTL  153 (185)
Q Consensus        78 --~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vi  153 (185)
                        .+.++++.+|+. +..++++++||||||||++||+++ .+|++||||||   |+++|.....+. .+.+.+ .|.|+|
T Consensus       525 ~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP---Ts~LD~~~~~~l-~~~L~~-~g~tvI  599 (986)
T 2iw3_A          525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP---TNHLDTVNVAWL-VNYLNT-CGITSI  599 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST---TTTCCHHHHHHH-HHHHHH-SCSEEE
T ss_pred             HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC---ccCCCHHHHHHH-HHHHHh-CCCEEE
Confidence              244567788884 678999999999999999999999 99999999999   555665555553 355555 589999


Q ss_pred             EecCh-hHHHHhhccccceeeeeEE-EEecc
Q psy5297         154 FATHF-HEIALLSRVIPTFRNVHES-KYLYH  182 (185)
Q Consensus       154 i~tH~-~~~~~~~d~~~~l~~g~i~-~~~~~  182 (185)
                      ++||+ .++..+||++++|++|+++ +.|+.
T Consensus       600 ivSHdl~~l~~~adrii~L~~G~iv~~~G~~  630 (986)
T 2iw3_A          600 TISHDSVFLDNVCEYIINYEGLKLRKYKGNF  630 (986)
T ss_dssp             EECSCHHHHHHHCSEEEEEETTEEEEEESCH
T ss_pred             EEECCHHHHHHhCCEEEEEECCeeecCCCCH
Confidence            99999 7888999999999999996 45654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.97  E-value=2.7e-33  Score=258.27  Aligned_cols=98  Identities=12%  Similarity=0.093  Sum_probs=78.5

Q ss_pred             hhHHHhhcCccc-c-cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297          79 VDQIFTRVGAAD-S-QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA  155 (185)
Q Consensus        79 ~~~~l~~~~l~~-~-~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~  155 (185)
                      ++++++.+|+.+ . .++++++||||||||++||+++ .+|++||||||   |+++|...... +.+.+++ .+.+||++
T Consensus       880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEP---T~gLD~~s~~~-L~~~L~~-~g~tVIiI  954 (986)
T 2iw3_A          880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEP---TNYLDRDSLGA-LSKALKE-FEGGVIII  954 (986)
T ss_dssp             HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECG---GGTCCHHHHHH-HHHHHHS-CSSEEEEE
T ss_pred             HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECC---ccCCCHHHHHH-HHHHHHH-hCCEEEEE
Confidence            345677788864 3 5888999999999999999999 99999999999   55566565554 4466665 57899999


Q ss_pred             cCh-hHHHHhhccccceeeeeEEEEec
Q psy5297         156 THF-HEIALLSRVIPTFRNVHESKYLY  181 (185)
Q Consensus       156 tH~-~~~~~~~d~~~~l~~g~i~~~~~  181 (185)
                      ||| .++..+||++++|++|+++..|+
T Consensus       955 SHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          955 THSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             CSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             ECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            999 77778999999999999987664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-31  Score=234.89  Aligned_cols=150  Identities=17%  Similarity=0.129  Sum_probs=113.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-----------HHH------------H-hhC-cee
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-----------VFL------------A-QIG-CFV   69 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-----------~~~------------~-~~g-~~v   69 (185)
                      .+.+++++ .+++|++++|+||||||||||||+|        |.+           .+.            . ... .+.
T Consensus        91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  169 (608)
T 3j16_B           91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK  169 (608)
T ss_dssp             SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred             ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence            45666666 5899999999999999999999999        444           110            0 011 011


Q ss_pred             cCCCCC-----------------------cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          70 PCDSAT-----------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        70 ~~~~~~-----------------------~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      ++....                       ...++++++.+++.+..++++++||+|||||++||+++ .+|++|||||||
T Consensus       170 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt  249 (608)
T 3j16_B          170 PQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS  249 (608)
T ss_dssp             CCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred             hhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            221100                       02466788999999999999999999999999999999 999999999996


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      +++|+.....+.+. ++.+++ .|.|||++||+ .++..+||++++|+++.
T Consensus       250 s~LD~~~~~~l~~~-l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          250 SYLDVKQRLNAAQI-IRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             TTCCHHHHHHHHHH-HHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             cCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            66665554444443 466665 58999999999 88889999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.97  E-value=7.7e-31  Score=230.54  Aligned_cols=149  Identities=15%  Similarity=0.126  Sum_probs=109.7

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-----------HHHH------------h-hC----
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-----------VFLA------------Q-IG----   66 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-----------~~~~------------~-~g----   66 (185)
                      .+.|.++.. +++|++++|+||||||||||+|+|        |.+           .+..            . .+    
T Consensus        13 ~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~   91 (538)
T 3ozx_A           13 GFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK   91 (538)
T ss_dssp             SCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred             ceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence            344444443 368999999999999999999999        443           1110            0 00    


Q ss_pred             -ceecCCCCC--------------cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297          67 -CFVPCDSAT--------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST  130 (185)
Q Consensus        67 -~~v~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~  130 (185)
                       .|+++.+..              ...++++++.+++.+..++++++||+|||||++||+++ .+|++|||||||+++|+
T Consensus        92 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~  171 (538)
T 3ozx_A           92 IQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV  171 (538)
T ss_dssp             CSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred             cchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence             012111100              11356788899999999999999999999999999999 99999999999666555


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH  175 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~  175 (185)
                      .....+.+. ++.+++  |.|||++||+ .++..+||++.++++|.
T Consensus       172 ~~~~~l~~~-l~~l~~--g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          172 RERMNMAKA-IRELLK--NKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHHHHHH-HHHHCT--TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHHHH-HHHHhC--CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            544444443 366643  8999999999 88889999999998764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.96  E-value=3.9e-30  Score=236.14  Aligned_cols=102  Identities=14%  Similarity=0.058  Sum_probs=85.3

Q ss_pred             HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297          81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA  155 (185)
Q Consensus        81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~  155 (185)
                      ++++.+++.. ..++++.+||||||||++||+++ .+   |+++||||||+|+|+.+...+.+.+ ..+.+ .|.|||++
T Consensus       827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL-~~L~~-~G~TVIvi  904 (972)
T 2r6f_A          827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL-HRLVD-NGDTVLVI  904 (972)
T ss_dssp             HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEE
T ss_pred             HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEE
Confidence            4567778876 67899999999999999999999 65   4999999998888877766666654 67766 59999999


Q ss_pred             cChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         156 THFHEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      ||+.+....||++++|      ++|++++.+++++
T Consensus       905 sHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~e  939 (972)
T 2r6f_A          905 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEE  939 (972)
T ss_dssp             CCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred             cCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence            9995555789999999      7899999988654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=1.6e-29  Score=232.57  Aligned_cols=102  Identities=14%  Similarity=0.047  Sum_probs=84.5

Q ss_pred             HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297          81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA  155 (185)
Q Consensus        81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~  155 (185)
                      ++++.+|+.. ..++++.+|||||+||++||+++ .+   |+++||||||+|+|+.+...+...+ +.+.+ .|.|||++
T Consensus       787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL-~~L~~-~G~TVIvI  864 (916)
T 3pih_A          787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVL-HRLVD-RGNTVIVI  864 (916)
T ss_dssp             HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEE
T ss_pred             HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-cCCEEEEE
Confidence            4456677764 35788999999999999999999 65   4799999998888887777666654 77766 59999999


Q ss_pred             cChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         156 THFHEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      ||+.+....||++++|      ++|++++.|++++
T Consensus       865 ~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpee  899 (916)
T 3pih_A          865 EHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEE  899 (916)
T ss_dssp             CCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred             eCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence            9996566679999999      8999999998865

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.96  E-value=1e-29  Score=232.14  Aligned_cols=102  Identities=9%  Similarity=0.020  Sum_probs=84.2

Q ss_pred             HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297          81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA  155 (185)
Q Consensus        81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~  155 (185)
                      ++++.+++.. ..++++.+||||||||+.||+++ .+   |+++||||||+|+|+.+...+.+.+ +.+++ .|.|||++
T Consensus       712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL-~~L~~-~G~tVIvi  789 (842)
T 2vf7_A          712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQL-VKLVD-AGNTVIAV  789 (842)
T ss_dssp             HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEE
T ss_pred             HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEE
Confidence            4556677766 46889999999999999999999 75   7999999998888877776666654 67776 59999999


Q ss_pred             cChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         156 THFHEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      ||+.+....||++++|      ++|++++.+++++
T Consensus       790 sHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~e  824 (842)
T 2vf7_A          790 EHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAE  824 (842)
T ss_dssp             CCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred             cCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence            9994444889999999      7999999987654

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.96  E-value=5.6e-29  Score=225.93  Aligned_cols=169  Identities=40%  Similarity=0.679  Sum_probs=136.8

Q ss_pred             ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHH
Q psy5297           4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIF   83 (185)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l   83 (185)
                      +.+.+++++||+++.  +.+++++|++|+   |++++|+||||||||||||+|+.+.+.++.|.++|+....+..+++++
T Consensus       549 ~~i~i~~~rHP~le~--~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~  623 (765)
T 1ewq_A          549 DRLQIRAGRHPVVER--RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY  623 (765)
T ss_dssp             SSEEEEEECCTTGGG--TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE
T ss_pred             CcEEEEEeECceEcc--CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh
Confidence            458899999999875  457899999998   999999999999999999999888777899988988765566666666


Q ss_pred             hhcCcccccccCcCccHHHHHHHHHHHHhC---CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297          84 TRVGAADSQYRGISTFMMEMKETATVIKKC---TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE  160 (185)
Q Consensus        84 ~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l---~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~  160 (185)
                      ..++..+..   ...+|.++++++.+++++   .+|+++|||||++||+++|+....+.+++.+.+ .|+++|++||+.+
T Consensus       624 ~~~~~~d~l---~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~  699 (765)
T 1ewq_A          624 TRIGASDDL---AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFE  699 (765)
T ss_dssp             EECCC---------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHH
T ss_pred             ccCCHHHHH---HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence            666665543   235678899998888765   799999999999999999988876666677776 6899999999977


Q ss_pred             HHHhhccccceeeeeEEEEeccC
Q psy5297         161 IALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       161 ~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      +..++  ...+.++++......+
T Consensus       700 l~~~~--~~~v~n~~~~~~~~~~  720 (765)
T 1ewq_A          700 LTALG--LPRLKNLHVAAREEAG  720 (765)
T ss_dssp             HHTCC--CTTEEEEEEEEECCSS
T ss_pred             HHHhh--hhcceEEEEEEEEcCC
Confidence            77787  6678888887765543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.94  E-value=4.1e-27  Score=198.09  Aligned_cols=84  Identities=14%  Similarity=-0.008  Sum_probs=68.1

Q ss_pred             ccCcCccHHHHHHHHHHHHhCC-------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          93 YRGISTFMMEMKETATVIKKCT-------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        93 ~~~~~~lS~g~~q~~~ia~~l~-------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      ++++++||+||+||++||+++.       +|+++||||||+|+|+.....+... +..+++ .|.|||++||+.+....|
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~-l~~l~~-~g~tvi~itH~~~~~~~~  351 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASV-LKELER-LNKVIVFITHDREFSEAF  351 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHH-HHGGGG-SSSEEEEEESCHHHHTTC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHh-CCCEEEEEecchHHHHhC
Confidence            5688899999999999988763       9999999999776666555555443 366665 599999999996668889


Q ss_pred             ccccceeeeeEEE
Q psy5297         166 RVIPTFRNVHESK  178 (185)
Q Consensus       166 d~~~~l~~g~i~~  178 (185)
                      |++++|++|+++.
T Consensus       352 d~~~~l~~G~i~~  364 (365)
T 3qf7_A          352 DRKLRITGGVVVN  364 (365)
T ss_dssp             SCEEEEETTEEC-
T ss_pred             CEEEEEECCEEEe
Confidence            9999999999864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.94  E-value=1.9e-27  Score=201.95  Aligned_cols=80  Identities=15%  Similarity=0.072  Sum_probs=63.9

Q ss_pred             cHHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce----
Q psy5297          99 FMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF----  171 (185)
Q Consensus        99 lS~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l----  171 (185)
                      +|+|||||++||+++ .+|  ++||||||++|+|+.....+.+. ++.+.  .+.+||+|||+.++...||++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~-L~~l~--~~~~vi~itH~~~~~~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ-LSRLA--DTRQVLVVTHLAQIAARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHH-HHHHT--TTSEEEEECSCHHHHTTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHh--CCCEEEEEeCcHHHHhhcCeEEEEEEec
Confidence            599999999999999 999  99999999666555544444443 35554  389999999997777899999999    


Q ss_pred             eeeeEEEEec
Q psy5297         172 RNVHESKYLY  181 (185)
Q Consensus       172 ~~g~i~~~~~  181 (185)
                      ++|+++....
T Consensus       373 ~~G~~~~~~~  382 (415)
T 4aby_A          373 EDGRTVSHVR  382 (415)
T ss_dssp             ETTEEEEEEE
T ss_pred             cCCceEEEEE
Confidence            8999876543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-28  Score=212.91  Aligned_cols=149  Identities=9%  Similarity=0.026  Sum_probs=109.5

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHHHH-------------HhhCceecCCCCC------cch------
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSVFL-------------AQIGCFVPCDSAT------ISV------   78 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~-------------~~~g~~v~~~~~~------~~~------   78 (185)
                      .+.++||++++|++++|+||||||||||+|+| |.....             ..++ |+||....      +++      
T Consensus       127 ~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~-~vpq~~~l~~~~~~~tv~eni~~  205 (460)
T 2npi_A          127 MLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIF-TVPGCISATPISDILDAQLPTWG  205 (460)
T ss_dssp             HHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSS-SCSSCCEEEECCSCCCTTCTTCS
T ss_pred             hhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCee-eeccchhhcccccccchhhhhcc
Confidence            44689999999999999999999999999999 322211             1234 78886511      112      


Q ss_pred             ------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHh--C-CCCeE----EEEeC-CCCCCCcCChhHHHH
Q psy5297          79 ------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK--C-TENSL----VIIDE-LGRGTSTFDGFGMAC  138 (185)
Q Consensus        79 ------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~--l-~~p~l----lllDE-P~~g~~~~d~~~~~~  138 (185)
                                  +..+++.+|+.+..+  +.+||+|||||+++|++  + .+|++    +|||| |++++|+.     ..
T Consensus       206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-----~~  278 (460)
T 2npi_A          206 QSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-----LA  278 (460)
T ss_dssp             CBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-----CH
T ss_pred             cccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-----HH
Confidence                        222344455555444  78999999999999999  9 99999    99999 97776665     23


Q ss_pred             HHHHHHHhcCCCeEEEecCh-h------HHHHhhcc-----cccee-eeeEEEEeccC
Q psy5297         139 SIARELASNRQPFTLFATHF-H------EIALLSRV-----IPTFR-NVHESKYLYHT  183 (185)
Q Consensus       139 ~il~~l~~~~~~~vii~tH~-~------~~~~~~d~-----~~~l~-~g~i~~~~~~~  183 (185)
                      .+.+.+++ .+.+++++||+ .      ++..+||+     +++|+ +|+++ .++++
T Consensus       279 ~l~~l~~~-~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~  334 (460)
T 2npi_A          279 ELHHIIEK-LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV  334 (460)
T ss_dssp             HHHHHHHH-TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred             HHHHHHHH-hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence            23233333 58899999998 5      55689999     99999 99988 66543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.94  E-value=1.7e-27  Score=180.29  Aligned_cols=132  Identities=14%  Similarity=0.089  Sum_probs=85.0

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHH--HHHHH--HHhhCceecCCCCCcchh----hHH------HhhcCcccccc
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--GVSVF--LAQIGCFVPCDSATISVV----DQI------FTRVGAADSQY   93 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--G~i~~--~~~~g~~v~~~~~~~~~~----~~~------l~~~~l~~~~~   93 (185)
                      |+||++++|++++|+||||||||||+|++  |...+  ....+ +++|++......    +.+      ....+.....+
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   79 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRG-LMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVD   79 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHH-HHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHH-HhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999976  11100  00113 666665322211    111      11223322222


Q ss_pred             cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh----------------hHHHHHHHHHHHhcCCCeEEEec
Q psy5297          94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG----------------FGMACSIARELASNRQPFTLFAT  156 (185)
Q Consensus        94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~----------------~~~~~~il~~l~~~~~~~vii~t  156 (185)
                       .....|+|+|||++||+++ .+|++++||||++++++...                ..+.. ++..++++ |.|+|++|
T Consensus        80 -~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~-~l~~l~~~-g~tvi~vt  156 (171)
T 4gp7_A           80 -ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKK-SIKGLQRE-GFRYVYIL  156 (171)
T ss_dssp             -SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH-HSTTHHHH-TCSEEEEE
T ss_pred             -CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhh-hhhhHHhc-CCcEEEEe
Confidence             3345699999999999999 99999999999555444311                11122 23445553 99999999


Q ss_pred             Ch-hHHHH
Q psy5297         157 HF-HEIAL  163 (185)
Q Consensus       157 H~-~~~~~  163 (185)
                      |+ .++.+
T Consensus       157 H~~~~~~~  164 (171)
T 4gp7_A          157 NSPEEVEE  164 (171)
T ss_dssp             CSHHHHHH
T ss_pred             CCHHHhhh
Confidence            99 55544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.91  E-value=9.2e-25  Score=166.75  Aligned_cols=127  Identities=13%  Similarity=0.032  Sum_probs=84.5

Q ss_pred             eEEEEccCCCcHHHHHHHH-HHHHHH---------------HhhCceecCCCCCcchhhHHHhhcCcc--cccccCcCcc
Q psy5297          38 FNLVTGPNMGGKSTYIRSI-GVSVFL---------------AQIGCFVPCDSATISVVDQIFTRVGAA--DSQYRGISTF   99 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i-G~i~~~---------------~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~l   99 (185)
                      .++|+||||||||||+|+| |...+.               ..++ |++|+.   +..++++..++..  +..++++.+|
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l   77 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTG-FRIITT---EGKKKIFSSKFFTSKKLVGSYGVNV   77 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCE-EEEEET---TCCEEEEEETTCCCSSEETTEEECH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeE-EEeecC---cHHHHHHHhhcCCccccccccccCc
Confidence            5899999999999999999 443210               1112 444432   1112222222222  2457778899


Q ss_pred             HHHHHHHHHHHHh-----C-CCCeEEEEeC--CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC---h-hHHHHhhcc
Q psy5297         100 MMEMKETATVIKK-----C-TENSLVIIDE--LGRGTSTFDGFGMACSIARELASNRQPFTLFATH---F-HEIALLSRV  167 (185)
Q Consensus       100 S~g~~q~~~ia~~-----l-~~p~llllDE--P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH---~-~~~~~~~d~  167 (185)
                      |+|||||+++|++     + .+|++++|||  |   ++.+|...... +.+.+.+ .+.++|++||   + ..+..+|++
T Consensus        78 SgG~~qr~~la~aa~~~~l~~~p~llilDEigp---~~~ld~~~~~~-l~~~l~~-~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A           78 QYFEELAIPILERAYREAKKDRRKVIIIDEIGK---MELFSKKFRDL-VRQIMHD-PNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCST---TGGGCHHHHHH-HHHHHTC-TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhccccccccCCCEEEEeCCCC---cccCCHHHHHH-HHHHHhc-CCCeEEEEEccCCCchHHHHHHhc
Confidence            9999999999996     7 9999999999  9   55566554433 4355554 5777888885   6 677788887


Q ss_pred             ccceeeeeEE
Q psy5297         168 IPTFRNVHES  177 (185)
Q Consensus       168 ~~~l~~g~i~  177 (185)
                          .+|++.
T Consensus       153 ----~~~~i~  158 (178)
T 1ye8_A          153 ----PGAVLI  158 (178)
T ss_dssp             ----TTCEEE
T ss_pred             ----CCcEEE
Confidence                445554

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.90  E-value=7.9e-26  Score=176.73  Aligned_cols=125  Identities=13%  Similarity=0.137  Sum_probs=76.4

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHH-----------------HhhCceecCCC-CCc-chhhHH
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------AQIGCFVPCDS-ATI-SVVDQI   82 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-----------------~~~g~~v~~~~-~~~-~~~~~~   82 (185)
                      .+.+++|+    ++|++++|+||||||||||+|+|......                 ..++ |+||++ ..+ ......
T Consensus        12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig-~v~q~~~enl~~~~~~~   86 (208)
T 3b85_A           12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLG-FLPGTLNEKIDPYLRPL   86 (208)
T ss_dssp             HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCC-SSCC------CTTTHHH
T ss_pred             HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceE-EecCCHHHHHHHHHHHH
Confidence            35688885    78999999999999999999999433321                 1234 777765 111 111111


Q ss_pred             Hhhc-Cc--ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          83 FTRV-GA--ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        83 l~~~-~l--~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      ...+ ..  .......... ..|||||++|||++ .+|+++||||||+|    ....+.+.+ ..+ + .|.||| +|||
T Consensus        87 ~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l-~~l-~-~g~tii-vtHd  157 (208)
T 3b85_A           87 HDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFL-TRL-G-FGSKMV-VTGD  157 (208)
T ss_dssp             HHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHH-TTB-C-TTCEEE-EEEC
T ss_pred             HHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHH-HHh-c-CCCEEE-EECC
Confidence            1111 10  0000000111 22999999999999 99999999999777    444444433 444 3 488999 9999


Q ss_pred             hH
Q psy5297         159 HE  160 (185)
Q Consensus       159 ~~  160 (185)
                      .+
T Consensus       158 ~~  159 (208)
T 3b85_A          158 IT  159 (208)
T ss_dssp             --
T ss_pred             HH
Confidence            33

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.89  E-value=3.7e-23  Score=170.99  Aligned_cols=83  Identities=11%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             cccCcCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297          92 QYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR  166 (185)
Q Consensus        92 ~~~~~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d  166 (185)
                      .+.++++||+|||||++||+++     .+|+++|||||++++|+.....+.+.+ ..+.  .+.++|++||+.++...||
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~--~~~~vi~~tH~~~~~~~~d  289 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLL-KENS--KHTQFIVITHNKIVMEAAD  289 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHH-HHHT--TTSEEEEECCCTTGGGGCS
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhc--CCCeEEEEECCHHHHhhCc
Confidence            4556789999999999999987     468999999996666655544444433 5553  3789999999976778999


Q ss_pred             cc--cceeeeeEE
Q psy5297         167 VI--PTFRNVHES  177 (185)
Q Consensus       167 ~~--~~l~~g~i~  177 (185)
                      ++  +++.+|.-.
T Consensus       290 ~~~~v~~~~g~s~  302 (322)
T 1e69_A          290 LLHGVTMVNGVSA  302 (322)
T ss_dssp             EEEEEEESSSCEE
T ss_pred             eEEEEEEeCCEEE
Confidence            87  777777643

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.88  E-value=1.9e-22  Score=167.82  Aligned_cols=80  Identities=13%  Similarity=0.028  Sum_probs=61.8

Q ss_pred             cccCcCccHHHHHH------HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297          92 QYRGISTFMMEMKE------TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus        92 ~~~~~~~lS~g~~q------~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      .++++.+||+||||      |+++|+++ .+|+++|||||++|+|+.....+... ++.+.+ .+.+||++||+.++...
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~-l~~~~~-~~~~vi~~sH~~~~~~~  319 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI-MERYLK-KIPQVILVSHDEELKDA  319 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHH-HHHTGG-GSSEEEEEESCGGGGGG
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHh-cCCEEEEEEChHHHHHh
Confidence            35678999999999      56777888 89999999999666655554444443 355554 47899999999778889


Q ss_pred             hccccceee
Q psy5297         165 SRVIPTFRN  173 (185)
Q Consensus       165 ~d~~~~l~~  173 (185)
                      ||+++.|+.
T Consensus       320 ~d~~~~l~~  328 (339)
T 3qkt_A          320 ADHVIRISL  328 (339)
T ss_dssp             CSEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999998863

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.87  E-value=9.3e-25  Score=169.67  Aligned_cols=149  Identities=12%  Similarity=0.040  Sum_probs=79.5

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-----------------HHhhCceecCCCCCcch---hh
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-----------------LAQIGCFVPCDSATISV---VD   80 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-----------------~~~~g~~v~~~~~~~~~---~~   80 (185)
                      +.+++++|  .++++|++++|+||||||||||+|+|....-                 ...++ |+||++..++.   .+
T Consensus         7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~~   83 (207)
T 1znw_A            7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVD-YHFIDPTRFQQLIDQG   83 (207)
T ss_dssp             --------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTT-BEECCHHHHHHHHHTT
T ss_pred             CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCe-eEecCHHHHHHHHhcC
Confidence            34678999  6889999999999999999999999943220                 11244 77776532211   00


Q ss_pred             HHH---------hhcCccc-----ccccC--c---CccHHHHHHHHHHHH---hC-CCCeEEEEeCCCCCCCcC-ChhHH
Q psy5297          81 QIF---------TRVGAAD-----SQYRG--I---STFMMEMKETATVIK---KC-TENSLVIIDELGRGTSTF-DGFGM  136 (185)
Q Consensus        81 ~~l---------~~~~l~~-----~~~~~--~---~~lS~g~~q~~~ia~---~l-~~p~llllDEP~~g~~~~-d~~~~  136 (185)
                      ++.         ...+...     ...+.  +   -++.+.+.++-....   ++ .+|++++||||++|++.. |....
T Consensus        84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~  163 (207)
T 1znw_A           84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQ  163 (207)
T ss_dssp             CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHH
T ss_pred             CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHH
Confidence            000         0001100     00000  0   223333333322222   45 799999999997777543 32222


Q ss_pred             HHH--HHHHHHhcCCCeEEEecCh-hHHHHhhcccccee
Q psy5297         137 ACS--IARELASNRQPFTLFATHF-HEIALLSRVIPTFR  172 (185)
Q Consensus       137 ~~~--il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~  172 (185)
                      .+.  +++.+.++.+.|++++||| .++.++||+++++.
T Consensus       164 ~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          164 RRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            221  2456654458999999999 88899999999985

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.87  E-value=8.5e-25  Score=186.41  Aligned_cols=148  Identities=17%  Similarity=0.110  Sum_probs=109.4

Q ss_pred             eeeeceEEEeeCCce--------------------eEEEEccCCCcHHHHHHHH--------HHHHHH----HhhCceec
Q psy5297          23 SYIPNDVYFKSGEVS--------------------FNLVTGPNMGGKSTYIRSI--------GVSVFL----AQIGCFVP   70 (185)
Q Consensus        23 ~~il~~isl~i~~g~--------------------~~~l~G~NGsGKSTLlk~i--------G~i~~~----~~~g~~v~   70 (185)
                      +.+++++||++++|+                    +++|+||||||||||+|+|        |.+.+.    ...+ +++
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~-~v~  114 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPY  114 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC-EEE
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE-Eec
Confidence            458999999999999                    9999999999999999999        222221    1124 777


Q ss_pred             CCCC--Ccc------------hhhHHHhhcCcccccccCcCccHHH--HHHHHHHHHhC-C----------CCeEEEEeC
Q psy5297          71 CDSA--TIS------------VVDQIFTRVGAADSQYRGISTFMME--MKETATVIKKC-T----------ENSLVIIDE  123 (185)
Q Consensus        71 ~~~~--~~~------------~~~~~l~~~~l~~~~~~~~~~lS~g--~~q~~~ia~~l-~----------~p~llllDE  123 (185)
                      |.+.  .++            .++++++.+++.+.. ..+. +|+|  |+||+.+|+++ .          +|+++++||
T Consensus       115 q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE  192 (413)
T 1tq4_A          115 KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE  192 (413)
T ss_dssp             ECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred             cccccCCeeehHhhcccchHHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence            7641  111            356778888876543 3333 9999  99999999998 7          999999999


Q ss_pred             CCCCCCcCChhHHHHHHHHHHH-----hc---CCCeEEEecCh-hH--HHHhhcccc-ceeee
Q psy5297         124 LGRGTSTFDGFGMACSIARELA-----SN---RQPFTLFATHF-HE--IALLSRVIP-TFRNV  174 (185)
Q Consensus       124 P~~g~~~~d~~~~~~~il~~l~-----~~---~~~~vii~tH~-~~--~~~~~d~~~-~l~~g  174 (185)
                      |++|+|+.....+.+.+ +.+.     +.   ...+++++||+ .+  +.++||++. .+..|
T Consensus       193 PtsgLD~~~~~~l~~~l-~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          193 ADGEPQTFDKEKVLQDI-RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             HTTCCTTCCHHHHHHHH-HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             ccccCCHHHHHHHHHHH-HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence            99999998877776655 3432     21   13568889997 54  899999885 44443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.84  E-value=4.7e-24  Score=175.34  Aligned_cols=133  Identities=10%  Similarity=-0.062  Sum_probs=95.1

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCc--ch--------------hhHHHhhcC
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATI--SV--------------VDQIFTRVG   87 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~--~~--------------~~~~l~~~~   87 (185)
                      .+|+++||++++|++++|+||||||||||+++|.... .+.+..|++|.+..+  ++              +.+.++.+ 
T Consensus       114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~-  191 (305)
T 2v9p_A          114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY-  191 (305)
T ss_dssp             HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT-
T ss_pred             hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH-
Confidence            4899999999999999999999999999999995443 444445777765222  11              12223322 


Q ss_pred             cccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297          88 AADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR  166 (185)
Q Consensus        88 l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d  166 (185)
                      +.+..+  ...||+|||||   ||++ .+|++||    |+++|+.....+..                .||+......||
T Consensus       192 L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----------------ltH~~~~~~~aD  246 (305)
T 2v9p_A          192 LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----------------LHSRVQTFRFEQ  246 (305)
T ss_dssp             TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------------GTTTEEEEECCC
T ss_pred             hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------------HhCCHHHHHhCC
Confidence            232233  67999999999   9999 9999999    78877766544421                288855567899


Q ss_pred             cccceeeeeEEEEeccCC
Q psy5297         167 VIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       167 ~~~~l~~g~i~~~~~~~~  184 (185)
                      ++ +|++|+++..+++++
T Consensus       247 ~i-vl~~G~iv~~g~~~e  263 (305)
T 2v9p_A          247 PC-TDESGEQPFNITDAD  263 (305)
T ss_dssp             CC-CCC---CCCCCCHHH
T ss_pred             EE-EEeCCEEEEeCCHHH
Confidence            99 999999998877653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.82  E-value=4.8e-21  Score=167.81  Aligned_cols=141  Identities=12%  Similarity=-0.037  Sum_probs=101.1

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHH-HHHHHHh-hCceecCCCCCcchhhHH---------HhhcCcccccccCcCcc
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIG-VSVFLAQ-IGCFVPCDSATISVVDQI---------FTRVGAADSQYRGISTF   99 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG-~i~~~~~-~g~~v~~~~~~~~~~~~~---------l~~~~l~~~~~~~~~~l   99 (185)
                      ..+.+|++++|+||||||||||++++. .....+. +..+.++++.. .....+         +...++....+..+.+|
T Consensus       276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~-~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~L  354 (525)
T 1tf7_A          276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA-QLLRNAYSWGMDFEEMERQNLLKIVCAYPESA  354 (525)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH-HHHHHHHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-HHHHHHHHcCCCHHHHHhCCCEEEEEeccccC
Confidence            378899999999999999999999994 3322211 12245665421 111111         11234445667788999


Q ss_pred             HHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC-----ChhHHHHHHHHHHHhcCCCeEEEecChh-----------HHH
Q psy5297         100 MMEMKETATVIKKC-TENSLVIIDELGRGTSTF-----DGFGMACSIARELASNRQPFTLFATHFH-----------EIA  162 (185)
Q Consensus       100 S~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~-----d~~~~~~~il~~l~~~~~~~vii~tH~~-----------~~~  162 (185)
                      |+||+|++.+|+++ .+|+++++| |+++++..     ....+.. +++.+++ .|.|+|++||+.           .+.
T Consensus       355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~-ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~  431 (525)
T 1tf7_A          355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG-VTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHIS  431 (525)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH-HHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCT
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH-HHHHHHh-CCCEEEEEECcccccCcccccCcccc
Confidence            99999999999999 999999999 97777765     3233333 3466665 699999999974           356


Q ss_pred             Hhhccccceeeee
Q psy5297         163 LLSRVIPTFRNVH  175 (185)
Q Consensus       163 ~~~d~~~~l~~g~  175 (185)
                      .+||++++|++|+
T Consensus       432 ~~~D~vi~L~~ge  444 (525)
T 1tf7_A          432 TITDTIILLQYVE  444 (525)
T ss_dssp             TTCSEEEEEEEEE
T ss_pred             eeeeEEEEEEEEE
Confidence            7899999999886

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.82  E-value=1.2e-20  Score=153.66  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=90.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH-HHHH-H-hhCceecCCCC---------------Ccch------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV-SVFL-A-QIGCFVPCDSA---------------TISV------   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~-i~~~-~-~~g~~v~~~~~---------------~~~~------   78 (185)
                      ..+|+++++.+++|++++|+||||||||||+++|.. +... + .+. |+..+..               .+..      
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~-~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~  100 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG-LAMLEESVEETAEDLIGLHNRVRLRQSDSLKR  100 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE-EEESSSCHHHHHHHHHHHHTTCCGGGCHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE-EEeCcCCHHHHHHHHHHHHcCCChhhcccccc
Confidence            457999999999999999999999999999999943 3221 1 111 2221110               0000      


Q ss_pred             -----------hhHHHhhcCcccccccCcCccHHHH-HHHHHHHHhC-CCCeEEEEeCCCCCCCc---CCh-hHHHHHH-
Q psy5297          79 -----------VDQIFTRVGAADSQYRGISTFMMEM-KETATVIKKC-TENSLVIIDELGRGTST---FDG-FGMACSI-  140 (185)
Q Consensus        79 -----------~~~~l~~~~l~~~~~~~~~~lS~g~-~q~~~ia~~l-~~p~llllDEP~~g~~~---~d~-~~~~~~i-  140 (185)
                                 ++.+++..++  .....+..+|.++ +|++. ++++ .+|+++++|||++..++   .|. ......+ 
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~  177 (296)
T 1cr0_A          101 EIIENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT  177 (296)
T ss_dssp             HHHHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHH
Confidence                       0111111111  1222335567776 66666 7777 99999999999884433   444 3332222 


Q ss_pred             -HHHHHhcCCCeEEEecChh-----------------------HHHHhhccccceeeeeE
Q psy5297         141 -ARELASNRQPFTLFATHFH-----------------------EIALLSRVIPTFRNVHE  176 (185)
Q Consensus       141 -l~~l~~~~~~~vii~tH~~-----------------------~~~~~~d~~~~l~~g~i  176 (185)
                       ++.++++.+++||++||+.                       .+..+||++++|++|+.
T Consensus       178 ~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          178 KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence             4556554699999999983                       56789999999998875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.81  E-value=3.5e-22  Score=156.66  Aligned_cols=141  Identities=8%  Similarity=-0.132  Sum_probs=85.3

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH------------------HHhhCceecCCCCCcch-------
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF------------------LAQIGCFVPCDSATISV-------   78 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~------------------~~~~g~~v~~~~~~~~~-------   78 (185)
                      .-|+|+||++++|++++|+||||||||||+|+|.....                  ...++ |+||++..+..       
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~   89 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVD-YYFIDKTIFEDKLKNEDF   89 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTT-BEECCHHHHHHHHHTTCE
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCe-EEECCHHHHHHhhhccch
Confidence            47899999999999999999999999999999943321                  01223 55654421110       


Q ss_pred             -----------------hhHHHhhcCcccccccCcCccHHHHHHHHHH-----HHhC-CCCeEEEEeCCCCCCCcCChhH
Q psy5297          79 -----------------VDQIFTRVGAADSQYRGISTFMMEMKETATV-----IKKC-TENSLVIIDELGRGTSTFDGFG  135 (185)
Q Consensus        79 -----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i-----a~~l-~~p~llllDEP~~g~~~~d~~~  135 (185)
                                       ++++++..... ..   ..++||||+||+++     ++++ ..|++++||||+++.+......
T Consensus        90 l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~  165 (218)
T 1z6g_A           90 LEYDNYANNFYGTLKSEYDKAKEQNKIC-LF---EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQ  165 (218)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHTTCEE-EE---EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHH
T ss_pred             hhhhhcccccCCCcHHHHHHHHhCCCcE-EE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHH
Confidence                             11111111100 01   14689999999999     7788 8999999999977777665555


Q ss_pred             HHHHHHHHHHhc------CCCeEEEecCh-hHHHHhhccccc
Q psy5297         136 MACSIARELASN------RQPFTLFATHF-HEIALLSRVIPT  170 (185)
Q Consensus       136 ~~~~il~~l~~~------~~~~vii~tH~-~~~~~~~d~~~~  170 (185)
                      +.+.+ ..+.++      .....|+++|+ .++...+++++.
T Consensus       166 i~~~l-~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~  206 (218)
T 1z6g_A          166 IQKRM-EQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL  206 (218)
T ss_dssp             HHHHH-HHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence            55544 333221      36788999998 778888887764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.81  E-value=2.7e-22  Score=166.65  Aligned_cols=130  Identities=16%  Similarity=0.038  Sum_probs=88.5

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccH-HHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM-MEM  103 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS-~g~  103 (185)
                      ++++++|.+++|++++|+||||||||||+|+|.... ....|.....+...+.          +... ...++-++ +||
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~~e~~----------~~~~-~~~i~~~~ggg~  227 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDTEEIV----------FKHH-KNYTQLFFGGNI  227 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESSCCCC----------CSSC-SSEEEEECBTTB
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCeeccc----------cccc-hhEEEEEeCCCh
Confidence            688999999999999999999999999999993321 1122211111111110          0000 00000011 899


Q ss_pred             HHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeee
Q psy5297         104 KETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH  175 (185)
Q Consensus       104 ~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~  175 (185)
                      +||+++++++ .+|+++++|||   ++    ....+ .++.+.. .+.+++++||.......|||+++|.+|+
T Consensus       228 ~~r~~la~aL~~~p~ilildE~---~~----~e~~~-~l~~~~~-g~~tvi~t~H~~~~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          228 TSADCLKSCLRMRPDRIILGEL---RS----SEAYD-FYNVLCS-GHKGTLTTLHAGSSEEAFIRLANMSSSN  291 (330)
T ss_dssp             CHHHHHHHHTTSCCSEEEECCC---CS----THHHH-HHHHHHT-TCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHhhhCCCEEEEcCC---Ch----HHHHH-HHHHHhc-CCCEEEEEEcccHHHHHhhhheehhcCC
Confidence            9999999999 99999999999   44    12333 3466654 3457999999966888999999998875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.81  E-value=2.4e-20  Score=153.12  Aligned_cols=138  Identities=14%  Similarity=0.174  Sum_probs=95.0

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH-------------------------H--HHhhCceecCCCC-Ccc-
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-------------------------F--LAQIGCFVPCDSA-TIS-   77 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~-------------------------~--~~~~g~~v~~~~~-~~~-   77 (185)
                      .++||++++|++++|+|||||||||+++.|....                         +  ...++ |++|.+. ..+ 
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~-~v~q~~~~~~~~  169 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKAKAA  169 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCC--CCCHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCce-EEEecCCccCHH
Confidence            5789999999999999999999999999992110                         1  11344 8888765 332 


Q ss_pred             --hhhHH------------HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHH
Q psy5297          78 --VVDQI------------FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSI  140 (185)
Q Consensus        78 --~~~~~------------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~i  140 (185)
                        +.+++            ++.+|+.+..++.+.+||   +||+++|+++ .+|+  +++|| |++|+   |.....   
T Consensus       170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl---D~~~~~---  239 (302)
T 3b9q_A          170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQA---  239 (302)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG---GGHHHH---
T ss_pred             HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc---CHHHHH---
Confidence              22222            233455555667778899   9999999999 9999  99999 95554   443322   


Q ss_pred             HHHHHhcCCCeEEEecCh-h---------HHHHhhccccceeeeeE
Q psy5297         141 ARELASNRQPFTLFATHF-H---------EIALLSRVIPTFRNVHE  176 (185)
Q Consensus       141 l~~l~~~~~~~vii~tH~-~---------~~~~~~d~~~~l~~g~i  176 (185)
                       +.+.++.+.++|++||. .         ........+.++..|+.
T Consensus       240 -~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          240 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             -HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             -HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence             34444368999999993 2         22334566777877764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.79  E-value=6.6e-21  Score=166.91  Aligned_cols=146  Identities=16%  Similarity=0.109  Sum_probs=90.1

Q ss_pred             ceeeeceEEE-eeCCceeEEEEccCCCcHHHHHHH--H-HHHHH-------------------HHhhCceecCCCCCcch
Q psy5297          22 VSYIPNDVYF-KSGEVSFNLVTGPNMGGKSTYIRS--I-GVSVF-------------------LAQIGCFVPCDSATISV   78 (185)
Q Consensus        22 ~~~il~~isl-~i~~g~~~~l~G~NGsGKSTLlk~--i-G~i~~-------------------~~~~g~~v~~~~~~~~~   78 (185)
                      +..+|++++| ++++|++++|+||||||||||+++  + |....                   ...+| |++|+..... 
T Consensus        24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g-~~~q~~~~~~-  101 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG-WDLAKLVDEG-  101 (525)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT-CCHHHHHHTT-
T ss_pred             CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC-CChHHhhccC-
Confidence            4568999999 999999999999999999999999  4 43321                   12233 5555431100 


Q ss_pred             hhHHHhhcCcc--cccccCcCccHHHHHHHHHHHHhC--CCCeEEEEeCCCCCCCc--CChhHHHHH--HHHHHHhcCCC
Q psy5297          79 VDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKKC--TENSLVIIDELGRGTST--FDGFGMACS--IARELASNRQP  150 (185)
Q Consensus        79 ~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~ia~~l--~~p~llllDEP~~g~~~--~d~~~~~~~--il~~l~~~~~~  150 (185)
                        .+. .+...  +....-...+..+.. .-.+...+  .+|+++++|||++....  +|.......  +++.+++ .|.
T Consensus       102 --~l~-~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~  176 (525)
T 1tf7_A          102 --KLF-ILDASPDPEGQEVVGGFDLSAL-IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGA  176 (525)
T ss_dssp             --SEE-EEECCCCSSCCSCCSSHHHHHH-HHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTC
T ss_pred             --cEE-EEecCcccchhhhhcccCHHHH-HHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCC
Confidence              000 00000  001111234444432 33344444  68999999999765433  343333222  3566766 599


Q ss_pred             eEEEecCh-hH---------HHHhhccccceeee
Q psy5297         151 FTLFATHF-HE---------IALLSRVIPTFRNV  174 (185)
Q Consensus       151 ~vii~tH~-~~---------~~~~~d~~~~l~~g  174 (185)
                      |+|++||+ .+         +..+||++++|++|
T Consensus       177 tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~  210 (525)
T 1tf7_A          177 TTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV  210 (525)
T ss_dssp             EEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred             EEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence            99999998 65         35669999999983

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.79  E-value=3.9e-19  Score=149.11  Aligned_cols=85  Identities=9%  Similarity=-0.037  Sum_probs=66.0

Q ss_pred             ccCcC-ccHHHHHHHHHHHHhCC----------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297          93 YRGIS-TFMMEMKETATVIKKCT----------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI  161 (185)
Q Consensus        93 ~~~~~-~lS~g~~q~~~ia~~l~----------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~  161 (185)
                      +++++ .+|+||||+++||+++.          +|+++|||||+++   +|...... +++.+.+ .+.|+|++||..+ 
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~---LD~~~~~~-l~~~l~~-~~qt~i~~th~~~-  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAE---LDPHRRQY-LLDLAAS-VPQAIVTGTELAP-  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC---CCHHHHHH-HHHHHHH-SSEEEEEESSCCT-
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc---CCHHHHHH-HHHHHHh-cCcEEEEEEeccc-
Confidence            34566 79999999999999873          8999999999555   55444433 3355554 3468999999633 


Q ss_pred             HHhhccccceeeeeEEEEeccCCC
Q psy5297         162 ALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       162 ~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                        .||++++|++|++...++++++
T Consensus       333 --~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 --GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             --TCSEEEEEETTEEEECCCTTTS
T ss_pred             --cCCEEEEEECCEEEecCCHHHH
Confidence              8999999999999999988764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.78  E-value=2.3e-21  Score=162.09  Aligned_cols=150  Identities=9%  Similarity=0.018  Sum_probs=97.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------------HHHHhhC-----------ceecCCCC-
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------------VFLAQIG-----------CFVPCDSA-   74 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------------~~~~~~g-----------~~v~~~~~-   74 (185)
                      ..+++++ |++.+|++++|+||||||||||+++| |..               .+...++           .++++... 
T Consensus        59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~  137 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRP  137 (347)
T ss_dssp             CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSC
T ss_pred             CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCC
Confidence            4589999 99999999999999999999999999 211               0111111           13333221 


Q ss_pred             CcchhhHHHhhcCcccc-c---------ccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297          75 TISVVDQIFTRVGAADS-Q---------YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL  144 (185)
Q Consensus        75 ~~~~~~~~l~~~~l~~~-~---------~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l  144 (185)
                      ....+...+..+.+.+. .         -+.+++||+|| |++++|  +.+|++      ++|+++.....+.+. ++++
T Consensus       138 ~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--l~~p~~------t~Gldp~~~~~l~~l-ler~  207 (347)
T 2obl_A          138 ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--SGEPDV------RGGFPPSVFSSLPKL-LERA  207 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH--TTCCCC------BTTBCHHHHHHHHHH-HTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH--cCCCCc------ccCCCHHHHHHHHHH-HHHH
Confidence            11112222221222111 1         15688999999 899998  566666      555555443333332 3554


Q ss_pred             Hh-cCCC-----eEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         145 AS-NRQP-----FTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       145 ~~-~~~~-----~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+ +.|.     ||+++|||.+ ..+||++..+.+|+++..++.++
T Consensus       208 ~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~  252 (347)
T 2obl_A          208 GPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE  252 (347)
T ss_dssp             EECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred             hCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence            43 2477     8999999955 78899999999999998876554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.78  E-value=4.8e-20  Score=146.54  Aligned_cols=130  Identities=13%  Similarity=0.131  Sum_probs=75.8

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH----H---HHhhCceecCCCCC--cchhhH----------
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV----F---LAQIGCFVPCDSAT--ISVVDQ----------   81 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~----~---~~~~g~~v~~~~~~--~~~~~~----------   81 (185)
                      +.+.+++|+||++++|++++|+||||||||||+|+|....    +   ...++ |++++...  ++..+.          
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~-~v~~d~~~~~l~~~~~~~~~~~~~~~   88 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV-ILSQDRFYKVLTAEQKAKALKGQYNF   88 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEE-EEEGGGGBCCCCHHHHHHHHTTCCCT
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceE-EEeCCcCccccCHhHhhhhhccCCCC
Confidence            4567999999999999999999999999999999994321    0   11223 67776411  111111          


Q ss_pred             ----------HHhhcC-cccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297          82 ----------IFTRVG-AADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ  149 (185)
Q Consensus        82 ----------~l~~~~-l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~  149 (185)
                                +.+.+. +.+....++..||+||+||+.+ +++ .+|+++|+|||   ....+..     +    .+..+
T Consensus        89 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~---~~~~~~~-----l----~~~~~  155 (245)
T 2jeo_A           89 DHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI---LVFYSQE-----I----RDMFH  155 (245)
T ss_dssp             TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT---TTTTSHH-----H----HTTCS
T ss_pred             CCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCc---cccccHH-----H----HHhcC
Confidence                      111111 2233456778899999999977 455 88999999999   4433321     1    12137


Q ss_pred             CeEEEecCh-hHHHHh
Q psy5297         150 PFTLFATHF-HEIALL  164 (185)
Q Consensus       150 ~~vii~tH~-~~~~~~  164 (185)
                      .+|+++||+ ..+.+.
T Consensus       156 ~~i~v~th~~~~~~r~  171 (245)
T 2jeo_A          156 LRLFVDTDSDVRLSRR  171 (245)
T ss_dssp             EEEEEECCHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHH
Confidence            899999997 666543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.78  E-value=2.7e-19  Score=149.98  Aligned_cols=138  Identities=14%  Similarity=0.186  Sum_probs=95.4

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH-------------------------H--HHhhCceecCCCC-Ccc-
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-------------------------F--LAQIGCFVPCDSA-TIS-   77 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~-------------------------~--~~~~g~~v~~~~~-~~~-   77 (185)
                      .++||++++|++++|+|||||||||+++.|....                         +  ...++ |++|.+. ..+ 
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~-~v~q~~~~~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKAKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCSSSSCCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeE-EEEecccccChh
Confidence            4689999999999999999999999999992210                         1  11344 8888765 332 


Q ss_pred             --hhhHH------------HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHH
Q psy5297          78 --VVDQI------------FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSI  140 (185)
Q Consensus        78 --~~~~~------------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~i  140 (185)
                        +.+++            ++.+|+.+..++.+.+||   +||+.||+++ .+|+  +++|| |++|   +|.....   
T Consensus       227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg---lD~~~~~---  296 (359)
T 2og2_A          227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG---LNMLPQA---  296 (359)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG---GGGHHHH---
T ss_pred             hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC---CCHHHHH---
Confidence              22222            233455555567778899   9999999999 9999  99999 9555   4543332   


Q ss_pred             HHHHHhcCCCeEEEecChh----------HHHHhhccccceeeeeE
Q psy5297         141 ARELASNRQPFTLFATHFH----------EIALLSRVIPTFRNVHE  176 (185)
Q Consensus       141 l~~l~~~~~~~vii~tH~~----------~~~~~~d~~~~l~~g~i  176 (185)
                       +.+.++.+.|+|++||..          .....+..+.++..|+.
T Consensus       297 -~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          297 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             -HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             -HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence             344443689999999942          22344566777777754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.77  E-value=5.9e-21  Score=157.47  Aligned_cols=129  Identities=13%  Similarity=0.059  Sum_probs=85.8

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHH-H---HhhCceecCCCCCcc----------------------hhhHHHhhc
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVF-L---AQIGCFVPCDSATIS----------------------VVDQIFTRV   86 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-~---~~~g~~v~~~~~~~~----------------------~~~~~l~~~   86 (185)
                      +++|++++|+||||||||||+|+|....- .   .+++ +++|+...++                      .+.++++.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~-~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l  165 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVD-LVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV  165 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEE-EEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEE-EEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            78999999999999999999999954322 1   1344 8888764332                      122334444


Q ss_pred             CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHH
Q psy5297          87 GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIAL  163 (185)
Q Consensus        87 ~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~  163 (185)
                      + .+..+..+.+||+||+||+++|+++ .+|+++|+|||+...++.+.         .+.+..+.+ |+++|+  .....
T Consensus       166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~---------~l~~~~D~~-I~V~a~~~~~~~R  234 (312)
T 3aez_A          166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL---------MVSDLFDFS-LYVDARIEDIEQW  234 (312)
T ss_dssp             H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC---------CGGGGCSEE-EEEEECHHHHHHH
T ss_pred             C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH---------HHHHhcCcE-EEEECCHHHHHHH
Confidence            4 3334567789999999999999999 99999999999766554221         122223444 555554  33345


Q ss_pred             hhccccceee
Q psy5297         164 LSRVIPTFRN  173 (185)
Q Consensus       164 ~~d~~~~l~~  173 (185)
                      +++|...+++
T Consensus       235 ~i~R~~~~rd  244 (312)
T 3aez_A          235 YVSRFLAMRT  244 (312)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            6666554443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.77  E-value=3.4e-19  Score=164.15  Aligned_cols=100  Identities=12%  Similarity=0.040  Sum_probs=84.1

Q ss_pred             HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +..+|+... .++++.+|||||+||++||+++ .+|+  ++||||||+|+++.+...+.+.+ +.+++ .|.|||++|||
T Consensus       448 L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L-~~L~~-~G~TvivVtHd  525 (916)
T 3pih_A          448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTL-KKLRD-LGNTVIVVEHD  525 (916)
T ss_dssp             HHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHH-HHTTT-TTCEEEEECCC
T ss_pred             HHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHH-HHHHh-cCCEEEEEeCC
Confidence            344677653 6899999999999999999999 8776  99999998888888877776654 77766 59999999999


Q ss_pred             hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         159 HEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      .+....||++++|      ++|++++.|++++
T Consensus       526 ~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e  557 (916)
T 3pih_A          526 EEVIRNADHIIDIGPGGGTNGGRVVFQGTVDE  557 (916)
T ss_dssp             HHHHHTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred             HHHHHhCCEEEEEcCCcccCCCEEEEeechhh
Confidence            6556679999999      8999999998754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.77  E-value=8.2e-19  Score=161.44  Aligned_cols=101  Identities=12%  Similarity=0.085  Sum_probs=86.1

Q ss_pred             HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CC--CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~--p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +..+|++.. +++.+.+|||||+||+.||+++ .+  |++|||||||+|+++.+...+.+.+ +.+++ .|.|||++||+
T Consensus       488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L-~~Lr~-~G~TVIvVeHd  565 (972)
T 2r6f_A          488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATL-KSMRD-LGNTLIVVEHD  565 (972)
T ss_dssp             HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHHHT-TTCEEEEECCC
T ss_pred             hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHH-HHHHh-CCCEEEEEecC
Confidence            556788754 7999999999999999999999 76  5999999998888888877776654 77876 69999999999


Q ss_pred             hHHHHhhccccce------eeeeEEEEeccCCC
Q psy5297         159 HEIALLSRVIPTF------RNVHESKYLYHTNV  185 (185)
Q Consensus       159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~~  185 (185)
                      .+....||++++|      ++|++++.|+++++
T Consensus       566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~  598 (972)
T 2r6f_A          566 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEV  598 (972)
T ss_dssp             HHHHHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred             HHHHHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence            5556689999999      79999999998764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.77  E-value=1.2e-18  Score=135.65  Aligned_cols=149  Identities=9%  Similarity=-0.009  Sum_probs=88.7

Q ss_pred             eeeceEEE-eeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh-hCceecCCCCCcchhhHHHhhcCccc--c-------c
Q psy5297          24 YIPNDVYF-KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAAD--S-------Q   92 (185)
Q Consensus        24 ~il~~isl-~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~~--~-------~   92 (185)
                      ..|+++.. .+++|++++|+||||||||||++.+........ -..|+..+.. ...+...+..++...  .       .
T Consensus        10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAKQFNWDFEEYIEKKLIII   88 (235)
T ss_dssp             HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHHHTTCCCGGGBTTTEEEE
T ss_pred             hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHHHhcchHHHHhhCCEEEE
Confidence            35677776 788999999999999999999999953222211 1113332221 111111111222110  0       0


Q ss_pred             c---------cCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCC--CcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          93 Y---------RGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGT--STFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        93 ~---------~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~--~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +         ......|.++.++...+.+. .+|+  ++++|||++++  ++.....+... +..+.++.+.++|++||+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~-l~~~~~~~~~~vi~~~h~  167 (235)
T 2w0m_A           89 DALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYY-LKRVLNKWNFTIYATSQY  167 (235)
T ss_dssp             ECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHH-HHHHHHHTTEEEEEEEC-
T ss_pred             eccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHH-HHHHHHhCCCeEEEEecc
Confidence            0         00123477887766655555 7899  99999997665  33222333333 345544468999999997


Q ss_pred             h-H--------HHHhhccccceeee
Q psy5297         159 H-E--------IALLSRVIPTFRNV  174 (185)
Q Consensus       159 ~-~--------~~~~~d~~~~l~~g  174 (185)
                      . .        +..+||++++|++.
T Consensus       168 ~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          168 AITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             ----------CHHHHCSEEEEEEEE
T ss_pred             CcccccccccchheeeeEEEEEEEE
Confidence            4 2        77899999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.76  E-value=4.5e-19  Score=142.79  Aligned_cols=121  Identities=19%  Similarity=0.181  Sum_probs=82.0

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh-hCc---------eecCCCCCcchhhHHHhhcCcccccc
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGC---------FVPCDSATISVVDQIFTRVGAADSQY   93 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-~g~---------~v~~~~~~~~~~~~~l~~~~l~~~~~   93 (185)
                      .++++++  +++|++++|+||||||||||+++|....- .. .|.         |+++....+  +.+  ..++++    
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i~~~~~~~~~~--v~q--~~~gl~----   83 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEYVFKHKKSI--VNQ--REVGED----   83 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSCCSCCCCSSSE--EEE--EEBTTT----
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCcceeecCCccee--eeH--HHhCCC----
Confidence            4889988  79999999999999999999999944321 22 221         222221100  000  012211    


Q ss_pred             cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccccee
Q psy5297          94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFR  172 (185)
Q Consensus        94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~  172 (185)
                        ...|      +++|++++ .+|+++++|||   +   |.......+ +.. + .|.+|+++||+.++...|||++.|.
T Consensus        84 --~~~l------~~~la~aL~~~p~illlDEp---~---D~~~~~~~l-~~~-~-~g~~vl~t~H~~~~~~~~dri~~l~  146 (261)
T 2eyu_A           84 --TKSF------ADALRAALREDPDVIFVGEM---R---DLETVETAL-RAA-E-TGHLVFGTLHTNTAIDTIHRIVDIF  146 (261)
T ss_dssp             --BSCH------HHHHHHHHHHCCSEEEESCC---C---SHHHHHHHH-HHH-H-TTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred             --HHHH------HHHHHHHHhhCCCEEEeCCC---C---CHHHHHHHH-HHH-c-cCCEEEEEeCcchHHHHHHHHhhhc
Confidence              1333      78999999 99999999999   5   555554433 443 3 5999999999966788899987764

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.75  E-value=8.6e-19  Score=129.92  Aligned_cols=80  Identities=13%  Similarity=0.044  Sum_probs=63.4

Q ss_pred             ccccCcCccHHHHHHHHHHH------HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHH
Q psy5297          91 SQYRGISTFMMEMKETATVI------KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIAL  163 (185)
Q Consensus        91 ~~~~~~~~lS~g~~q~~~ia------~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~  163 (185)
                      ..++++++||+|||||+++|      +++ .+|+++||||||+|+|+.....+.+. +..+.+ .|.+||++||+.++..
T Consensus        50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~-~~~tiiivsH~~~~~~  127 (148)
T 1f2t_B           50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI-MERYLK-KIPQVILVSHDEELKD  127 (148)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHH-HHHTGG-GSSEEEEEESCGGGGG
T ss_pred             cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHH-HHHHHc-cCCEEEEEEChHHHHH
Confidence            36788999999999999876      788 89999999999666655544444443 355544 4889999999977788


Q ss_pred             hhcccccee
Q psy5297         164 LSRVIPTFR  172 (185)
Q Consensus       164 ~~d~~~~l~  172 (185)
                      +||++++|+
T Consensus       128 ~~d~ii~l~  136 (148)
T 1f2t_B          128 AADHVIRIS  136 (148)
T ss_dssp             GCSEEEEEE
T ss_pred             hCCEEEEEE
Confidence            999999994

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.75  E-value=2.4e-18  Score=157.36  Aligned_cols=100  Identities=9%  Similarity=0.014  Sum_probs=86.3

Q ss_pred             HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297          83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus        83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +..+|+.+. +++++.+|||||+||+.||+++ .+|  .++||||||+++++.+...+.+.+ +.+++ .|.|||++||+
T Consensus       363 L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l-~~L~~-~G~TVIvVeHd  440 (842)
T 2vf7_A          363 LLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSAL-ENLKR-GGNSLFVVEHD  440 (842)
T ss_dssp             HHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHHHT-TTCEEEEECCC
T ss_pred             HHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHH-HHHHH-cCCEEEEEcCC
Confidence            456788754 7999999999999999999999 888  599999998888888877776654 78876 69999999999


Q ss_pred             hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297         159 HEIALLSRVIPTF------RNVHESKYLYHTN  184 (185)
Q Consensus       159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~  184 (185)
                      .++...||++++|      ++|++++.+++++
T Consensus       441 l~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~  472 (842)
T 2vf7_A          441 LDVIRRADWLVDVGPEAGEKGGEILYSGPPEG  472 (842)
T ss_dssp             HHHHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred             HHHHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence            6667789999999      7999999998765

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.75  E-value=4.5e-20  Score=158.52  Aligned_cols=148  Identities=7%  Similarity=-0.039  Sum_probs=101.8

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------------H----HHHH-----------HHhhCceecCCC
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------------G----VSVF-----------LAQIGCFVPCDS   73 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------------G----~i~~-----------~~~~g~~v~~~~   73 (185)
                      ..+++++ |++.+|++++|+||||||||||+++|              |    .+.-           ...++ |++|..
T Consensus       145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~-~v~q~~  222 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVV-IAAPAD  222 (438)
T ss_dssp             CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEE-EEECTT
T ss_pred             ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEE-EEECCC
Confidence            4589999 99999999999999999999999999              2    1211           11234 888853


Q ss_pred             C----CcchhhHHH---hhcCc--cc--ccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297          74 A----TISVVDQIF---TRVGA--AD--SQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR  142 (185)
Q Consensus        74 ~----~~~~~~~~l---~~~~l--~~--~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~  142 (185)
                      .    .+++.+.+.   +.+..  .+  ..-..++.||+|| ||+++|  +.+|++      ++|+++.....+.+.+ +
T Consensus       223 ~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--l~~p~~------t~glD~~~~~~l~~ll-~  292 (438)
T 2dpy_A          223 VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--IGEPPA------TKGYPPSVFAKLPALV-E  292 (438)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--TTCCCC------SSSCCTTHHHHHHHHH-T
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--hCCCcc------cccCCHHHHHHHHHHH-H
Confidence            2    122222221   11111  00  1123477899999 999998  777877      7777776655554433 5


Q ss_pred             HHHh---cCCC-----eEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297         143 ELAS---NRQP-----FTLFATHFHEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       143 ~l~~---~~~~-----~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      ++.+   +.|.     ||+++|||.. ..+||+++++.+|+++..++++
T Consensus       293 r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~  340 (438)
T 2dpy_A          293 RAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLA  340 (438)
T ss_dssp             TCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHH
T ss_pred             HHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHH
Confidence            5443   1264     8999999955 7899999999999999887654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.73  E-value=2.1e-18  Score=134.37  Aligned_cols=143  Identities=11%  Similarity=0.021  Sum_probs=77.1

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHH-HHHHHhh------CceecCCCC-CcchhhHHHhhcCcccc-c--c-cCcCcc
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGV-SVFLAQI------GCFVPCDSA-TISVVDQIFTRVGAADS-Q--Y-RGISTF   99 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~-i~~~~~~------g~~v~~~~~-~~~~~~~~l~~~~l~~~-~--~-~~~~~l   99 (185)
                      .+++|++++|+||||||||||+++|.. +......      ..|+..... ....+..+...+++... .  + .....+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  100 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF  100 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence            578999999999999999999999943 2221110      113333221 11123344444444311 0  0 001122


Q ss_pred             HHH-HHHHHHHHHhC--------CCCeEEEEeCCCCCCCcCC-----hh-------HHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         100 MME-MKETATVIKKC--------TENSLVIIDELGRGTSTFD-----GF-------GMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       100 S~g-~~q~~~ia~~l--------~~p~llllDEP~~g~~~~d-----~~-------~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +.+ +++.+..+..+        .+|+++++|||++++++.-     ..       .+... +..+.++.|.|||++||.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~-l~~~~~~~g~tvi~vtH~  179 (231)
T 4a74_A          101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLAD-LHRLANLYDIAVFVTNQV  179 (231)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHH-HHHHHHHHTCEEEEEEEC
T ss_pred             ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHH-HHHHHHHCCCeEEEEeec
Confidence            333 33323333322        3899999999955543310     01       12222 344444369999999994


Q ss_pred             -h----HHHHhhccccceeeee
Q psy5297         159 -H----EIALLSRVIPTFRNVH  175 (185)
Q Consensus       159 -~----~~~~~~d~~~~l~~g~  175 (185)
                       .    .+...||+++++++|+
T Consensus       180 ~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          180 QANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             C---------CCSEEEEEEECT
T ss_pred             ccCcchhhHhhceEEEEEEecC
Confidence             3    3778999999998753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.71  E-value=1.1e-17  Score=135.22  Aligned_cols=129  Identities=14%  Similarity=0.102  Sum_probs=82.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-----------hhCceecCCCCCcc---h----------
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-----------QIGCFVPCDSATIS---V----------   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-----------~~g~~v~~~~~~~~---~----------   78 (185)
                      .+++.    .+++|++++|+||||||||||++.+....-.+           ....|+..+.....   .          
T Consensus        21 d~~lg----gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~   96 (279)
T 1nlf_A           21 DYVLP----NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSA   96 (279)
T ss_dssp             CEEET----TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCH
T ss_pred             heeEC----CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcCh
Confidence            34564    46799999999999999999999994322111           01124444331111   1          


Q ss_pred             --hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC--CCCcCChhHHHHHH--HHHHHhcCCCe
Q psy5297          79 --VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR--GTSTFDGFGMACSI--ARELASNRQPF  151 (185)
Q Consensus        79 --~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~--g~~~~d~~~~~~~i--l~~l~~~~~~~  151 (185)
                        ...+++.+.+.+..++++..+|+|+++++   +++ .+|+++++|||++  +.+..+.....+.+  +..+.++.|+|
T Consensus        97 ~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t  173 (279)
T 1nlf_A           97 EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS  173 (279)
T ss_dssp             HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred             hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence              11224455566666778999999998765   344 7899999999987  65443332222222  45554436999


Q ss_pred             EEEecCh
Q psy5297         152 TLFATHF  158 (185)
Q Consensus       152 vii~tH~  158 (185)
                      ||+++|+
T Consensus       174 vi~i~H~  180 (279)
T 1nlf_A          174 IVFLHHA  180 (279)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            9999997

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.71  E-value=2.2e-19  Score=145.21  Aligned_cols=110  Identities=16%  Similarity=0.117  Sum_probs=69.4

Q ss_pred             eEEEEccCCCcHHHHHHHH--------HHHHHHH----------hhCceecCCCC---CcchhhH--------------H
Q psy5297          38 FNLVTGPNMGGKSTYIRSI--------GVSVFLA----------QIGCFVPCDSA---TISVVDQ--------------I   82 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i--------G~i~~~~----------~~g~~v~~~~~---~~~~~~~--------------~   82 (185)
                      .++|+||||||||||+|+|        |.+.+.+          .++ |+||+..   .+++.+.              .
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~-~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIG-HVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEE-ESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeE-EEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            3899999999999999999        4444422          233 7787652   2222221              1


Q ss_pred             HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297          83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH  157 (185)
Q Consensus        83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH  157 (185)
                      +..+...+..+..+.+||+||+||+++||++  +.++++|||++|+++.|    .+ +++.+.+ . .++|++.|
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal--~~lllldep~~gL~~lD----~~-~l~~L~~-~-~~vI~Vi~  148 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVH--CCLYFISPTGHSLRPLD----LE-FMKHLSK-V-VNIIPVIA  148 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCC--EEEEEECCCSSSCCHHH----HH-HHHHHHT-T-SEEEEEET
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheee--eeeEEEecCCCcCCHHH----HH-HHHHHHh-c-CcEEEEEe
Confidence            1112223345667789999999999999986  24999999988887776    22 3466665 3 66666655

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.70  E-value=1.8e-18  Score=132.99  Aligned_cols=133  Identities=17%  Similarity=0.155  Sum_probs=79.5

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHHHHHh-----------------hCceecCCCCCcchhhHHHhhcCcc-------cc
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----------------IGCFVPCDSATISVVDQIFTRVGAA-------DS   91 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-----------------~g~~v~~~~~~~~~~~~~l~~~~l~-------~~   91 (185)
                      |++++|+||||||||||+++|....-...                 +| |++|+...   ....+..++..       ..
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig-~~~~~~~g---~~~~l~~~~~~~~~~~~~~~   76 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIG-FDVVTLSG---TRGPLSRVGLEPPPGKRECR   76 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEE-EEEEETTS---CEEEEEECCCCCCSSSCCEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEE-EEEEeccc---ceehhhcccccCCccccccc
Confidence            68999999999999999999943322211                 11 33332100   00112222211       12


Q ss_pred             cccCcCccHHHHHHHHHH-HH---hC-CCCeEEEEeC--CCCCCCcCChhHHHHHHHHHHHhcCCCeEEE----ecChhH
Q psy5297          92 QYRGISTFMMEMKETATV-IK---KC-TENSLVIIDE--LGRGTSTFDGFGMACSIARELASNRQPFTLF----ATHFHE  160 (185)
Q Consensus        92 ~~~~~~~lS~g~~q~~~i-a~---~l-~~p~llllDE--P~~g~~~~d~~~~~~~il~~l~~~~~~~vii----~tH~~~  160 (185)
                      ..++...+|+||++++.. .+   |+ .+|+++|+||  |   ++..|.. ..+.+ +.+.+. ..++|+    +||+..
T Consensus        77 v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~---~~~~~~~-~~~~l-~~~l~~-~~~~ilgti~vsh~~~  150 (189)
T 2i3b_A           77 VGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGK---MELFSQL-FIQAV-RQTLST-PGTIILGTIPVPKGKP  150 (189)
T ss_dssp             SSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCST---TTTTCSH-HHHHH-HHHHHC-SSCCEEEECCCCCSSC
T ss_pred             cceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCc---cccccHH-HHHHH-HHHHhC-CCcEEEEEeecCCCCc
Confidence            344556799999988854 33   35 8999999999  6   6666654 33444 444332 334443    449743


Q ss_pred             HHHhhccccceeeeeEEEE
Q psy5297         161 IALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       161 ~~~~~d~~~~l~~g~i~~~  179 (185)
                       ..++|++..+.+|++..-
T Consensus       151 -~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          151 -LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             -CTTHHHHHTTCCSEEEEC
T ss_pred             -hHHHHHHeecCCcEEEEe
Confidence             457778777888888653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.69  E-value=8.6e-17  Score=124.41  Aligned_cols=148  Identities=12%  Similarity=0.079  Sum_probs=92.0

Q ss_pred             eeceEEE-eeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-CCcchhhHHHhhcCccc--cc-ccCcCcc
Q psy5297          25 IPNDVYF-KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFTRVGAAD--SQ-YRGISTF   99 (185)
Q Consensus        25 il~~isl-~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-~~~~~~~~~l~~~~l~~--~~-~~~~~~l   99 (185)
                      .|+++.. .+++|++++|+||||||||||++.+..  -...-..|+..+. .....+.++...++...  .. +-.+.+.
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTP   85 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECC
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEec
Confidence            3444443 578999999999999999999999955  1111122555443 12223444444444421  11 1123334


Q ss_pred             HHHH--HHHHHHHHhC-CC-CeEEEEeCCCCCCCcCCh-----hHHHHHH--HHHHHhcCCCeEEEecCh-h--------
Q psy5297         100 MMEM--KETATVIKKC-TE-NSLVIIDELGRGTSTFDG-----FGMACSI--ARELASNRQPFTLFATHF-H--------  159 (185)
Q Consensus       100 S~g~--~q~~~ia~~l-~~-p~llllDEP~~g~~~~d~-----~~~~~~i--l~~l~~~~~~~vii~tH~-~--------  159 (185)
                      +.++  ++++..++++ .+ |+++++|||++.+++...     ..+.+.+  +..+.++.+.++|+++|. .        
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~  165 (220)
T 2cvh_A           86 SDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTK  165 (220)
T ss_dssp             TTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCC
T ss_pred             CCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccc
Confidence            4443  5677777777 54 999999999877765322     2222221  355554468999999996 4        


Q ss_pred             -----HHHHhhccccceeee
Q psy5297         160 -----EIALLSRVIPTFRNV  174 (185)
Q Consensus       160 -----~~~~~~d~~~~l~~g  174 (185)
                           .+...||.+++|++.
T Consensus       166 p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          166 PVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             SCCCHHHHHTSSEEEEEEEC
T ss_pred             cCCCcceeecCcEEEEEEEe
Confidence                 467899999999764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.67  E-value=1.2e-16  Score=133.92  Aligned_cols=124  Identities=13%  Similarity=0.034  Sum_probs=73.9

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHH-HHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i  109 (185)
                      ...+|++++|+|||||||||||++| |.+.-. .-+. +.-.++..+..-..    ...-.........++...    +|
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~~~~~~----~~~v~q~~~~~~~~~~~~----~L  189 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEFVHESK----KCLVNQREVHRDTLGFSE----AL  189 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCSCCCCS----SSEEEEEEBTTTBSCHHH----HH
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHhhhhcc----ccceeeeeeccccCCHHH----HH
Confidence            5578889999999999999999999 544322 1121 11122211110000    000000001111122222    89


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceee
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN  173 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~  173 (185)
                      ++++ .+|+++++|||   +   |... .+.+ ..+.+ .|.++++++|+......+||++.|..
T Consensus       190 a~aL~~~PdvillDEp---~---d~e~-~~~~-~~~~~-~G~~vl~t~H~~~~~~~~dRli~l~~  245 (356)
T 3jvv_A          190 RSALREDPDIILVGEM---R---DLET-IRLA-LTAAE-TGHLVFGTLHTTSAAKTIDRVVDVFP  245 (356)
T ss_dssp             HHHTTSCCSEEEESCC---C---SHHH-HHHH-HHHHH-TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred             HHHhhhCcCEEecCCC---C---CHHH-HHHH-HHHHh-cCCEEEEEEccChHHHHHHHHhhhcC
Confidence            9999 99999999999   5   4333 3333 23344 59999999999555688999988754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.66  E-value=1.1e-19  Score=140.59  Aligned_cols=123  Identities=11%  Similarity=0.014  Sum_probs=83.5

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCc-----c------------------hhhHHHhhcCcc
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATI-----S------------------VVDQIFTRVGAA   89 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~-----~------------------~~~~~l~~~~l~   89 (185)
                      .++|++++|+||||||||||+|+|.... ..+++ |++|+....     +                  .+.++++.+++.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~-~~~i~-~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   80 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTL-GERVA-LLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG   80 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHH-GGGEE-EEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHh-CCCeE-EEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence            4689999999999999999999995431 11355 777765221     1                  133445556666


Q ss_pred             cccccCcCccHHHHH----HHHHHHHhC-CCCeEEEEeCCCCC-------CCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297          90 DSQYRGISTFMMEMK----ETATVIKKC-TENSLVIIDELGRG-------TSTFDGFGMACSIARELASNRQPFTLFATH  157 (185)
Q Consensus        90 ~~~~~~~~~lS~g~~----q~~~ia~~l-~~p~llllDEP~~g-------~~~~d~~~~~~~il~~l~~~~~~~vii~tH  157 (185)
                      +..+.++.++|.|++    |++.+++++ .+|.++++|||+++       ++......+.+.+.+...+ .|.+++.++|
T Consensus        81 ~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~-~g~t~~~~~~  159 (211)
T 3asz_A           81 LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE-RGRSLEGVVA  159 (211)
T ss_dssp             CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH-SCCCHHHHHH
T ss_pred             CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH-hCCCHHHHHH
Confidence            667778889999974    567778888 89999999999666       4443333344433233333 5889988999


Q ss_pred             h
Q psy5297         158 F  158 (185)
Q Consensus       158 ~  158 (185)
                      +
T Consensus       160 ~  160 (211)
T 3asz_A          160 Q  160 (211)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.63  E-value=4.7e-18  Score=142.51  Aligned_cols=148  Identities=9%  Similarity=-0.045  Sum_probs=85.0

Q ss_pred             eeceEEEeeCC--ceeEEEEccCCCcHHHHHHHHH------------HHHHHHhh-CceecCCCCCcchh----hH-HH-
Q psy5297          25 IPNDVYFKSGE--VSFNLVTGPNMGGKSTYIRSIG------------VSVFLAQI-GCFVPCDSATISVV----DQ-IF-   83 (185)
Q Consensus        25 il~~isl~i~~--g~~~~l~G~NGsGKSTLlk~iG------------~i~~~~~~-g~~v~~~~~~~~~~----~~-~l-   83 (185)
                      +...|++++.+  |+.++|+||||||||||+|+|.            .+.+..+. +.-..-....+..+    .. .+ 
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~  236 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY  236 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence            35679999999  9999999999999999999993            33332111 10000000000000    00 00 


Q ss_pred             -----hh--cCcccccccCcCccHHHHHHHHHHHHhC--CCCeEEEEeC---CCC------CCCcCChhHHHHHHHHHHH
Q psy5297          84 -----TR--VGAADSQYRGISTFMMEMKETATVIKKC--TENSLVIIDE---LGR------GTSTFDGFGMACSIARELA  145 (185)
Q Consensus        84 -----~~--~~l~~~~~~~~~~lS~g~~q~~~ia~~l--~~p~llllDE---P~~------g~~~~d~~~~~~~il~~l~  145 (185)
                           +.  +...+..++.+..+|+|++++..+++++  .+|++++|||   |+.      +++......+.+.+ ..+.
T Consensus       237 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l-~~l~  315 (365)
T 1lw7_A          237 AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL-KKLL  315 (365)
T ss_dssp             HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH-HHHH
T ss_pred             HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH-HHHH
Confidence                 00  0001112233445667777777777765  6899999999   753      44444555555544 3333


Q ss_pred             hcCCCeEEEecChhHHHHhhccccceee
Q psy5297         146 SNRQPFTLFATHFHEIALLSRVIPTFRN  173 (185)
Q Consensus       146 ~~~~~~vii~tH~~~~~~~~d~~~~l~~  173 (185)
                      ++.+.+++++||..+..++++++..+++
T Consensus       316 ~~~~~~ililde~~~~~r~~~~i~~i~~  343 (365)
T 1lw7_A          316 DKYKVPYIEIESPSYLDRYNQVKAVIEK  343 (365)
T ss_dssp             HGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence            3358899999987667777777766653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.60  E-value=1.2e-16  Score=120.75  Aligned_cols=107  Identities=15%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHH
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKET  106 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~  106 (185)
                      +|++++|+.++|+||||+|||||++++...... ..|   .|+.        ..+++..+.         ..++.+..+ 
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~~~~~~--------~~~~~~~~~---------~~~~~~~~~-   92 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIRGYFFD--------TKDLIFRLK---------HLMDEGKDT-   92 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCCCCEEE--------HHHHHHHHH---------HHHHHTCCS-
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCeEEEEE--------HHHHHHHHH---------HHhcCchHH-
Confidence            355678999999999999999999999554321 122   1211        112221111         001111111 


Q ss_pred             HHHHHhCCCCeEEEEeCCCC-CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         107 ATVIKKCTENSLVIIDELGR-GTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       107 ~~ia~~l~~p~llllDEP~~-g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                       .+...+.+|++|+||||++ ++++.....+.. +++...+ .+.++|++||.
T Consensus        93 -~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~-ll~~~~~-~~~~ii~tsn~  142 (180)
T 3ec2_A           93 -KFLKTVLNSPVLVLDDLGSERLSDWQRELISY-IITYRYN-NLKSTIITTNY  142 (180)
T ss_dssp             -HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH-HHHHHHH-TTCEEEEECCC
T ss_pred             -HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH-HHHHHHH-cCCCEEEEcCC
Confidence             1222335899999999964 444433333333 3355544 58999999996

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.57  E-value=6.6e-15  Score=123.93  Aligned_cols=126  Identities=14%  Similarity=0.103  Sum_probs=77.1

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCce-ecCCCCCcchhhHHHhhcCc-c-cccccCcCccHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF-VPCDSATISVVDQIFTRVGA-A-DSQYRGISTFMM  101 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~-v~~~~~~~~~~~~~l~~~~l-~-~~~~~~~~~lS~  101 (185)
                      ++++++  +++|++++|+||||||||||+++|....-....|.. ...++..+. ..   ...+. . ......+..|+ 
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~-~~---~~~~~v~Q~~~g~~~~~~~-  199 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-FK---HKKSIVNQREVGEDTKSFA-  199 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSC-CC---CSSSEEEEEEBTTTBSCSH-
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhh-hc---cCceEEEeeecCCCHHHHH-
Confidence            455554  689999999999999999999999443221112311 111111110 00   00000 0 00111344563 


Q ss_pred             HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297         102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF  171 (185)
Q Consensus       102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l  171 (185)
                           .++++++ .+|+++++|||   +   |...+...+ +.. . .|.+++.++|+.++...+||++.|
T Consensus       200 -----~~l~~~L~~~pd~illdE~---~---d~e~~~~~l-~~~-~-~g~~vi~t~H~~~~~~~~~rl~~l  256 (372)
T 2ewv_A          200 -----DALRAALREDPDVIFVGEM---R---DLETVETAL-RAA-E-TGHLVFGTLHTNTAIDTIHRIVDI  256 (372)
T ss_dssp             -----HHHHHHTTSCCSEEEESCC---C---SHHHHHHHH-HHH-T-TTCEEEECCCCCSHHHHHHHHHHT
T ss_pred             -----HHHHHHhhhCcCEEEECCC---C---CHHHHHHHH-HHH-h-cCCEEEEEECcchHHHHHHHHHHh
Confidence                 4788888 99999999999   5   444444333 443 3 589999999986688888887654

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.55  E-value=2.7e-15  Score=131.13  Aligned_cols=78  Identities=17%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             cCcCcc-HHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297          94 RGISTF-MMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP  169 (185)
Q Consensus        94 ~~~~~l-S~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~  169 (185)
                      +++++| ||||+||++||+++ .+|  +++|||||++|+|+.....+...+ ..+++  +.+||++||+.++...||+++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l-~~~~~--~~~vi~itH~~~~~~~~d~~~  468 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQL-SRLAD--TRQVLVVTHLAQIAARAHHHY  468 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHH-HHHHH--HSEEEEECCCHHHHHHSSEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHH-HHHhC--CCEEEEEecCHHHHHhCCEEE
Confidence            457788 99999999999999 999  999999997777776655555544 66664  789999999966777899999


Q ss_pred             ceeee
Q psy5297         170 TFRNV  174 (185)
Q Consensus       170 ~l~~g  174 (185)
                      +|.++
T Consensus       469 ~~~~~  473 (517)
T 4ad8_A          469 KVEKQ  473 (517)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.55  E-value=5.7e-15  Score=115.71  Aligned_cols=143  Identities=13%  Similarity=0.046  Sum_probs=75.4

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHH-HHHH-----hhC-ceecCCCC-CcchhhHHHhhcCcccc--cc--cCcCcc
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVS-VFLA-----QIG-CFVPCDSA-TISVVDQIFTRVGAADS--QY--RGISTF   99 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i-~~~~-----~~g-~~v~~~~~-~~~~~~~~l~~~~l~~~--~~--~~~~~l   99 (185)
                      .+++|++++|+||||||||||++.+... ....     ..+ .|+..+.. .......++..++....  .+  .....+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   99 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF   99 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence            3678999999999999999999999432 2211     111 14433321 12223344455554310  00  011223


Q ss_pred             HHHHHH-HHH-HHHhC--CCCeEEEEeCCCCCCCcC-C-----h--h-HHHHHH--HHHHHhcCCCeEEEecCh-hHHHH
Q psy5297         100 MMEMKE-TAT-VIKKC--TENSLVIIDELGRGTSTF-D-----G--F-GMACSI--ARELASNRQPFTLFATHF-HEIAL  163 (185)
Q Consensus       100 S~g~~q-~~~-ia~~l--~~p~llllDEP~~g~~~~-d-----~--~-~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~  163 (185)
                      +..+.. .+. +...+  .+|+++++|||++.+++. +     .  . .....+  +..+.++.+++||+++|. .+...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~  179 (243)
T 1n0w_A          100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDG  179 (243)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------
T ss_pred             CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCC
Confidence            333322 222 22233  689999999997766543 0     1  0 022222  334444369999999996 44332


Q ss_pred             -------------------hhccccceeee
Q psy5297         164 -------------------LSRVIPTFRNV  174 (185)
Q Consensus       164 -------------------~~d~~~~l~~g  174 (185)
                                         +||.+++|+.+
T Consensus       180 ~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          180 AAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             -----------------CCTTCEEEEEEEC
T ss_pred             ccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence                               78999988865

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.54  E-value=5e-15  Score=112.26  Aligned_cols=80  Identities=10%  Similarity=-0.003  Sum_probs=59.9

Q ss_pred             cccccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297          90 DSQYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus        90 ~~~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      +...+++..||||||||++||+++ .    .|+++|||||++|+|+.....+... +..+.+  +.++|++||+......
T Consensus        56 ~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~-l~~~~~--~~~~ivith~~~~~~~  132 (173)
T 3kta_B           56 GKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADL-IKESSK--ESQFIVITLRDVMMAN  132 (173)
T ss_dssp             SSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH-HHHHTT--TSEEEEECSCHHHHTT
T ss_pred             CccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHH-HHHhcc--CCEEEEEEecHHHHHh
Confidence            345677899999999999999998 4    3699999999666555444444443 344443  5689999998777889


Q ss_pred             hcccccee
Q psy5297         165 SRVIPTFR  172 (185)
Q Consensus       165 ~d~~~~l~  172 (185)
                      ||+++.+.
T Consensus       133 ad~i~~v~  140 (173)
T 3kta_B          133 ADKIIGVS  140 (173)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            99998654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.52  E-value=9.8e-15  Score=119.82  Aligned_cols=116  Identities=18%  Similarity=0.122  Sum_probs=70.2

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHH-------------------------H--HHhhCceecCCCCCcc---hhhHHH-
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSV-------------------------F--LAQIGCFVPCDSATIS---VVDQIF-   83 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~-------------------------~--~~~~g~~v~~~~~~~~---~~~~~l-   83 (185)
                      +|++++|+|||||||||++++|+...                         +  ...++ |++|.....+   +.+++. 
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~-~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP-VIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCC-EECCCTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHHH
Confidence            68999999999999999999993221                         1  12345 8888764333   222221 


Q ss_pred             ---hh-----cCcccccccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeE
Q psy5297          84 ---TR-----VGAADSQYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSIARELASNRQPFT  152 (185)
Q Consensus        84 ---~~-----~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~v  152 (185)
                         ..     ++.....+.....++...+||+++||++ .+|+  ++.|| |   +   ........+ ..+.++.+.|+
T Consensus       180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a---~---t~~~~~~~~-~~~~~~~~~t~  251 (304)
T 1rj9_A          180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-A---V---TGQNGLEQA-KKFHEAVGLTG  251 (304)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-T---T---BCTHHHHHH-HHHHHHHCCSE
T ss_pred             HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-H---H---HHHHHHHHH-HHHHHHcCCcE
Confidence               00     1111112222223444458999999999 9999  56666 4   2   223333333 44544358999


Q ss_pred             EEecChh
Q psy5297         153 LFATHFH  159 (185)
Q Consensus       153 ii~tH~~  159 (185)
                      |++||+.
T Consensus       252 iivTh~d  258 (304)
T 1rj9_A          252 VIVTKLD  258 (304)
T ss_dssp             EEEECTT
T ss_pred             EEEECCc
Confidence            9999973

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.51  E-value=9.2e-15  Score=122.05  Aligned_cols=138  Identities=12%  Similarity=0.029  Sum_probs=78.7

Q ss_pred             eeceE-EEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-HHhh----C--ceecCCCCC-cchhhHHHhhcCcccc----
Q psy5297          25 IPNDV-YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-LAQI----G--CFVPCDSAT-ISVVDQIFTRVGAADS----   91 (185)
Q Consensus        25 il~~i-sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-~~~~----g--~~v~~~~~~-~~~~~~~l~~~~l~~~----   91 (185)
                      .|+++ ++.+++|++++|+||||||||||++++..... ....    |  .|+...... ...+..+...+++...    
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~  198 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK  198 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGG
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhh
Confidence            34444 57889999999999999999999999943321 1111    1  244433321 1222333333333210    


Q ss_pred             -cccCcCccHHHHHHHHHHHHhC--------CCCeEEEEeCCCCCCCcCC-----hhH----HHHHH--HHHHHhcCCCe
Q psy5297          92 -QYRGISTFMMEMKETATVIKKC--------TENSLVIIDELGRGTSTFD-----GFG----MACSI--ARELASNRQPF  151 (185)
Q Consensus        92 -~~~~~~~lS~g~~q~~~ia~~l--------~~p~llllDEP~~g~~~~d-----~~~----~~~~i--l~~l~~~~~~~  151 (185)
                       ..-....-|.+++|++.+++.+        .+|+++++|||++++++..     ...    +.+.+  +..+.++.+++
T Consensus       199 ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~t  278 (349)
T 1pzn_A          199 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA  278 (349)
T ss_dssp             GEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence             0000011267888988887765        3799999999976664421     001    22222  34444446999


Q ss_pred             EEEecCh-hHHH
Q psy5297         152 TLFATHF-HEIA  162 (185)
Q Consensus       152 vii~tH~-~~~~  162 (185)
                      ||+++|. ....
T Consensus       279 vii~~h~~~~~~  290 (349)
T 1pzn_A          279 VFVTNQVQARPD  290 (349)
T ss_dssp             EEEEEECC----
T ss_pred             EEEEcccccccc
Confidence            9999997 5443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.49  E-value=1.1e-15  Score=125.14  Aligned_cols=120  Identities=13%  Similarity=0.004  Sum_probs=68.4

Q ss_pred             ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH-HHHH----------------HhhCceecCCCC---Ccchhh
Q psy5297          22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV-SVFL----------------AQIGCFVPCDSA---TISVVD   80 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~-i~~~----------------~~~g~~v~~~~~---~~~~~~   80 (185)
                      ++.++++++|++      +|+||||+|||||+++| |. ....                ...+ ++++...   .+++++
T Consensus        10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~-~~~q~~~~~~~ltv~D   82 (301)
T 2qnr_A           10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEAST-VEIEERGVKLRLTVVD   82 (301)
T ss_dssp             --------CEEE------EEEEETTSSHHHHHHHHHC------------------------CE-EEEC---CCEEEEEEE
T ss_pred             CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEE-EEecCCCcccCcchhh
Confidence            467999999987      99999999999999997 33 2110                1122 5555431   122222


Q ss_pred             HH---------------HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCC-CCcCChhHHHHHHHHHH
Q psy5297          81 QI---------------FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG-TSTFDGFGMACSIAREL  144 (185)
Q Consensus        81 ~~---------------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g-~~~~d~~~~~~~il~~l  144 (185)
                      ..               ...  +.+..++++.++|+|+|||+.++|++   .++++|||+++ +++.+   . + +++.+
T Consensus        83 t~g~~~~~~~~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~---~ll~ldePt~~~Ld~~~---~-~-~l~~l  152 (301)
T 2qnr_A           83 TPGYGDAINCRDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVH---CCFYFISPFGHGLKPLD---V-A-FMKAI  152 (301)
T ss_dssp             EC-----------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCC---EEEEEECSSSSSCCHHH---H-H-HHHHH
T ss_pred             hhhhhhhcCcHHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhh---heeeeecCcccCCCHHH---H-H-HHHHH
Confidence            11               110  11222367788999999988777765   39999999653 55544   2 3 34566


Q ss_pred             HhcCCCeEEEecCh
Q psy5297         145 ASNRQPFTLFATHF  158 (185)
Q Consensus       145 ~~~~~~~vii~tH~  158 (185)
                      .++.+.++|+++||
T Consensus       153 ~~~~~iilV~~K~D  166 (301)
T 2qnr_A          153 HNKVNIVPVIAKAD  166 (301)
T ss_dssp             TTTSCEEEEECCGG
T ss_pred             HhcCCEEEEEEeCC
Confidence            55347888899998

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.45  E-value=1.9e-14  Score=110.38  Aligned_cols=128  Identities=8%  Similarity=-0.071  Sum_probs=74.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---HHHHhhC-------------c
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---VFLAQIG-------------C   67 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---~~~~~~g-------------~   67 (185)
                      .++++++.+.|-      ..++++  |.+++|..++|+|+||||||||++.+ |..   .+....|             .
T Consensus         3 ~l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~   74 (210)
T 1pui_A            3 NLNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK   74 (210)
T ss_dssp             --------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred             chhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence            356677765541      246777  88999999999999999999999999 221   0000000             0


Q ss_pred             --------------------------eecCCC-------------CCcc----hhhHHHhhcCcccc-cccCcCccHHHH
Q psy5297          68 --------------------------FVPCDS-------------ATIS----VVDQIFTRVGAADS-QYRGISTFMMEM  103 (185)
Q Consensus        68 --------------------------~v~~~~-------------~~~~----~~~~~l~~~~l~~~-~~~~~~~lS~g~  103 (185)
                                                ++++..             ...+    .+..++...++... ...+...+|+|+
T Consensus        75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~  154 (210)
T 1pui_A           75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA  154 (210)
T ss_dssp             EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred             EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence                                      000000             0000    01122233343322 255677899999


Q ss_pred             HHH-HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297         104 KET-ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI  140 (185)
Q Consensus       104 ~q~-~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i  140 (185)
                      +|+ +..++++ .+|.++++|||++++++.....+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l  193 (210)
T 1pui_A          155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL  193 (210)
T ss_dssp             HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHH
Confidence            998 6788777 888888999998888887766666655

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.41  E-value=3.2e-16  Score=119.18  Aligned_cols=140  Identities=11%  Similarity=0.004  Sum_probs=71.0

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH-----HHH-----H--HhhCceecCCCCC---cchhhHHH---hh---cCcccccc-
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV-----SVF-----L--AQIGCFVPCDSAT---ISVVDQIF---TR---VGAADSQY-   93 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~-----i~~-----~--~~~g~~v~~~~~~---~~~~~~~l---~~---~~l~~~~~-   93 (185)
                      |++++|+|||||||||++|.|..     +.+     .  ...+ ++++....   .++.+.+.   ..   .+.....+ 
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~   80 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGG-YRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDY   80 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTT-CCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccc-cccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEee
Confidence            78999999999999999999932     111     1  1123 55543311   11222111   11   11110111 


Q ss_pred             -------cCcCcc--HHHHHHHHHHHH------hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297          94 -------RGISTF--MMEMKETATVIK------KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH  157 (185)
Q Consensus        94 -------~~~~~l--S~g~~q~~~ia~------~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH  157 (185)
                             +...++  |+|+++++.++.      ++ .+|+...+|+   ++++..... .+ .++.+.+ .+.++|.+||
T Consensus        81 ~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~-~~~~~~~-~~~~ii~tsh  154 (189)
T 2bdt_A           81 IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE-EFESKGI-DERYFYNTSH  154 (189)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH-HHHHTTC-CTTSEEECSS
T ss_pred             ccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH-HHhhcCC-CccEEEeCCC
Confidence                   111223  555554443333      23 3444445564   355533333 22 2344443 4789999999


Q ss_pred             h--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         158 F--HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       158 ~--~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .  .++.++||+++  ++|+++..++++.
T Consensus       155 ~~~~~~e~~~~~i~--~~g~~~~~~~~~~  181 (189)
T 2bdt_A          155 LQPTNLNDIVKNLK--TNPRFIFCMAGDP  181 (189)
T ss_dssp             SCGGGHHHHHHHHH--HCGGGSCC-----
T ss_pred             CChhhHHHHHHHHh--hCCcEEEeecCCc
Confidence            6  67889999998  9999998887654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.40  E-value=4.2e-13  Score=99.07  Aligned_cols=101  Identities=13%  Similarity=0.194  Sum_probs=61.7

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhHHHhhcCcccccccCcCccHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMM  101 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~  101 (185)
                      ++.++     +|+.++|+||||+|||||+++++.....  .|   .|++......                 .       
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~-----------------~-------   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPL-----------------T-------   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCC-----------------C-------
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhH-----------------H-------
Confidence            45555     7999999999999999999999654322  12   1333322110                 0       


Q ss_pred             HHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe-EEEecCh--hHH---HHhhccc
Q psy5297         102 EMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF-TLFATHF--HEI---ALLSRVI  168 (185)
Q Consensus       102 g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~-vii~tH~--~~~---~~~~d~~  168 (185)
                               ..+.+|+++++|||++ ++..+...+.. +++.+.+ .|.+ +|++||.  .++   .++++|+
T Consensus        79 ---------~~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~-~g~~~iiits~~~p~~l~~~~~L~SRl  139 (149)
T 2kjq_A           79 ---------DAAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRN-SGKGFLLLGSEYTPQQLVIREDLRTRM  139 (149)
T ss_dssp             ---------GGGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHH-HTCCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred             ---------HHHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHH-cCCcEEEEECCCCHHHccccHHHHHHH
Confidence                     1136799999999955 33222222333 3455555 4777 8889994  323   4555554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.38  E-value=5.6e-14  Score=119.83  Aligned_cols=133  Identities=14%  Similarity=0.107  Sum_probs=84.0

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH----------HHHhhCceecCCC-CCcc----------------h
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV----------FLAQIGCFVPCDS-ATIS----------------V   78 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~----------~~~~~g~~v~~~~-~~~~----------------~   78 (185)
                      -++++|+++.|+.++|+|+|||||||||++|....          +....+ ++++.. ..+.                .
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L  225 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGL  225 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhh
Confidence            36999999999999999999999999999992210          111122 333321 0000                0


Q ss_pred             hhHHH----------hhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc
Q psy5297          79 VDQIF----------TRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASN  147 (185)
Q Consensus        79 ~~~~l----------~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~  147 (185)
                      ....+          ..+++.   +.++.++|.+++|++.+++++ ..|.++++    +.+|..+. ...+.+.+.+.+ 
T Consensus       226 ~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~-  296 (416)
T 1udx_A          226 GLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAR-  296 (416)
T ss_dssp             CHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHT-
T ss_pred             hHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHh-
Confidence            01111          112222   466788999999999999998 99999999    77777765 333334344444 


Q ss_pred             CCCeEEEec-Ch-hHHHHhhccc
Q psy5297         148 RQPFTLFAT-HF-HEIALLSRVI  168 (185)
Q Consensus       148 ~~~~vii~t-H~-~~~~~~~d~~  168 (185)
                      .+.+++++| |. ..+.++++.+
T Consensus       297 ~g~~vi~iSA~~g~gi~eL~~~i  319 (416)
T 1udx_A          297 EGLAVLPVSALTGAGLPALKEAL  319 (416)
T ss_dssp             TTSCEEECCTTTCTTHHHHHHHH
T ss_pred             cCCeEEEEECCCccCHHHHHHHH
Confidence            577777655 45 5555554433

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.37  E-value=2.5e-13  Score=114.02  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=56.5

Q ss_pred             cCcCccHHHHHHHH------HHHHhC-CC-CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297          94 RGISTFMMEMKETA------TVIKKC-TE-NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus        94 ~~~~~lS~g~~q~~------~ia~~l-~~-p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                      .+++.+|+||+||+      ++|+++ .+ |+++|||||++|+|+.....+.+.+ ..+.  .+.+||++||+.++..+|
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~--~~~~vi~~th~~~~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF-RKVK--SIPQMIIITHHRELEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHH-HHCC--SCSEEEEEESCGGGGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHH-HHhc--cCCeEEEEEChHHHHhhC
Confidence            45679999999988      456777 88 9999999996665544433333322 3332  246899999996678899


Q ss_pred             ccccceee
Q psy5297         166 RVIPTFRN  173 (185)
Q Consensus       166 d~~~~l~~  173 (185)
                      |++++|++
T Consensus       353 d~~~~l~k  360 (371)
T 3auy_A          353 DVIINVKK  360 (371)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99999973

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.37  E-value=2.7e-14  Score=127.08  Aligned_cols=45  Identities=11%  Similarity=0.048  Sum_probs=32.6

Q ss_pred             CCCeEEEEeCC------CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         114 TENSLVIIDEL------GRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       114 ~~p~llllDEP------~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      ..|+++|+|||      ++|+++.....+...+.+.+.+..+.+++++||+
T Consensus       145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~  195 (608)
T 3szr_A          145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN  195 (608)
T ss_dssp             SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred             CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence            67999999999      8888887666666655333444347788889997

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.36  E-value=1.2e-14  Score=124.12  Aligned_cols=129  Identities=16%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHHH-----------H-----HhhCce
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSVF-----------L-----AQIGCF   68 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~-----------~-----~~~g~~   68 (185)
                      +.+.++...|     +.+.++++++|++      +|+||||||||||+++| |....           .     ..++ +
T Consensus        12 l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~-~   79 (418)
T 2qag_C           12 VGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK-V   79 (418)
T ss_dssp             ---CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEE-C
T ss_pred             EEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEE-E
Confidence            4444544433     3356999999987      99999999999999999 32110           0     0112 4


Q ss_pred             ecCCCC---CcchhhHHHhhcCcccccc-----c-----CcCccHHHHHHHHHHHHhC-CCCe---EEEEeCCC-CCCCc
Q psy5297          69 VPCDSA---TISVVDQIFTRVGAADSQY-----R-----GISTFMMEMKETATVIKKC-TENS---LVIIDELG-RGTST  130 (185)
Q Consensus        69 v~~~~~---~~~~~~~~l~~~~l~~~~~-----~-----~~~~lS~g~~q~~~ia~~l-~~p~---llllDEP~-~g~~~  130 (185)
                      +++...   .+++++.+    +.....+     +     --..++.+++|+++|++++ .+|+   ++++|||+ +|+++
T Consensus        80 v~q~~~~~~~Ltv~Dt~----g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~  155 (418)
T 2qag_C           80 LIKEGGVQLLLTIVDTP----GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP  155 (418)
T ss_dssp             C------CEEEEEEECC---------------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCH
T ss_pred             EEecCCcccceeeeech----hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCH
Confidence            444331   12222221    1111100     0     0124677788888999999 9999   99999996 46666


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297         131 FDGFGMACSIARELASNRQPFTLFATH  157 (185)
Q Consensus       131 ~d~~~~~~~il~~l~~~~~~~vii~tH  157 (185)
                      .|   . . +++.+..  +..+|++.|
T Consensus       156 ~d---~-~-~lk~L~~--~v~iIlVin  175 (418)
T 2qag_C          156 LD---I-E-FMKRLHE--KVNIIPLIA  175 (418)
T ss_dssp             HH---H-H-HHHHHTT--TSEEEEEEE
T ss_pred             HH---H-H-HHHHHhc--cCcEEEEEE
Confidence            55   2 2 2355553  555555444

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.35  E-value=2.2e-14  Score=120.30  Aligned_cols=137  Identities=9%  Similarity=-0.049  Sum_probs=79.4

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHH
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKE  105 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q  105 (185)
                      +++++|.+++|++++|+||||||||||+|+|.... ....|.....+...+... ..-..+++-.. .+....++.+...
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~~e~~~~-~~~~~v~~v~~-q~~~~~~~~~~t~  241 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDVPELFLP-DHPNHVHLFYP-SEAKEEENAPVTA  241 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESSSCCCCT-TCSSEEEEECC-----------CCH
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCccccCcc-ccCCEEEEeec-CccccccccccCH
Confidence            38999999999999999999999999999994311 111221111111111100 00000110000 0000112355567


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeee
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNV  174 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g  174 (185)
                      +..++.++ .+|+.+++|||   .+    ..... +++.+.. ...+++.++|.......++|+..+..+
T Consensus       242 ~~~i~~~l~~~pd~~l~~e~---r~----~~~~~-~l~~l~~-g~~~~l~t~H~~~~~~~~~Rl~~l~~~  302 (361)
T 2gza_A          242 ATLLRSCLRMKPTRILLAEL---RG----GEAYD-FINVAAS-GHGGSITSCHAGSCELTFERLALMVLQ  302 (361)
T ss_dssp             HHHHHHHTTSCCSEEEESCC---CS----THHHH-HHHHHHT-TCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCEEEEcCc---hH----HHHHH-HHHHHhc-CCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence            78888888 89999999999   32    22333 3466654 245678899986678888888776554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.34  E-value=3.1e-13  Score=115.38  Aligned_cols=127  Identities=13%  Similarity=0.023  Sum_probs=74.0

Q ss_pred             eeeeceEEEeeCCcee--EEEEccCCCcHHHHHHHHHHHHH-----H--------HhhCceecCCCCC---cch------
Q psy5297          23 SYIPNDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIGVSVF-----L--------AQIGCFVPCDSAT---ISV------   78 (185)
Q Consensus        23 ~~il~~isl~i~~g~~--~~l~G~NGsGKSTLlk~iG~i~~-----~--------~~~g~~v~~~~~~---~~~------   78 (185)
                      .+ ++++||++++|++  ++|+||||||||||+|+|....+     .        ..++ |++|....   +++      
T Consensus        28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNT-YDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEE-EEEEC--CEEEEEEEEEECC
T ss_pred             ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEE-EEeecCccccccchhhhhhh
Confidence            44 9999999999999  99999999999999999922111     1        1123 77776421   111      


Q ss_pred             --------------------hhHHHhhc-Cccc----ccccC----c-------CccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297          79 --------------------VDQIFTRV-GAAD----SQYRG----I-------STFMMEMKETATVIKKC-TENSLVII  121 (185)
Q Consensus        79 --------------------~~~~l~~~-~l~~----~~~~~----~-------~~lS~g~~q~~~ia~~l-~~p~llll  121 (185)
                                          ++.++... ++..    ..+..    +       ..++...   +.+++++ .+++++++
T Consensus       106 g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~V  182 (427)
T 2qag_B          106 GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPI  182 (427)
T ss_dssp             CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEE
T ss_pred             hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEE
Confidence                                11122222 2211    01111    1       1233333   6788999 89999999


Q ss_pred             eCCCCCCCcCChhHHHH---HHHHHHHhcCCCeEEEecCh
Q psy5297         122 DELGRGTSTFDGFGMAC---SIARELASNRQPFTLFATHF  158 (185)
Q Consensus       122 DEP~~g~~~~d~~~~~~---~il~~l~~~~~~~vii~tH~  158 (185)
                      |||   +|.+....+..   .+.+.+.. .|..|+.+|.+
T Consensus       183 i~K---tD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~is~~  218 (427)
T 2qag_B          183 IAK---ADAISKSELTKFKIKITSELVS-NGVQIYQFPTD  218 (427)
T ss_dssp             ESC---GGGSCHHHHHHHHHHHHHHHBT-TBCCCCCCC--
T ss_pred             Ecc---hhccchHHHHHHHHHHHHHHHH-cCCcEEecCCC
Confidence            999   55555554443   33334655 68999988875

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.34  E-value=1.9e-12  Score=109.94  Aligned_cols=144  Identities=14%  Similarity=0.062  Sum_probs=79.0

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-Hhh------CceecCCC-CCcchhhHHHhhcCcccc--c-ccC-cCcc
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQI------GCFVPCDS-ATISVVDQIFTRVGAADS--Q-YRG-ISTF   99 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~------g~~v~~~~-~~~~~~~~~l~~~~l~~~--~-~~~-~~~l   99 (185)
                      .+++|++++|+||||||||||++.+...... ...      ..|+..+. ........+...+++...  . +-. ...+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~  253 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY  253 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence            4689999999999999999999977422111 111      11443332 122234445566665321  0 000 1112


Q ss_pred             H-HHHHHHHHHH-HhC--CCCeEEEEeCCCCCCCcCCh-----hH----HHHH--HHHHHHhcCCCeEEEecCh-h----
Q psy5297         100 M-MEMKETATVI-KKC--TENSLVIIDELGRGTSTFDG-----FG----MACS--IARELASNRQPFTLFATHF-H----  159 (185)
Q Consensus       100 S-~g~~q~~~ia-~~l--~~p~llllDEP~~g~~~~d~-----~~----~~~~--il~~l~~~~~~~vii~tH~-~----  159 (185)
                      + ..+.+.+.-+ ..+  .+|+++++|||++.++..-.     ..    +.+.  .+..++++.+.+||+++|. .    
T Consensus       254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g  333 (400)
T 3lda_A          254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDG  333 (400)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred             ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCc
Confidence            2 2233333322 222  68999999999655543211     00    0111  1455655569999999997 1    


Q ss_pred             ---------------HHHHhhccccceeeee
Q psy5297         160 ---------------EIALLSRVIPTFRNVH  175 (185)
Q Consensus       160 ---------------~~~~~~d~~~~l~~g~  175 (185)
                                     .+...+|.+++|+.++
T Consensus       334 ~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          334 GMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             --------------CHHHHHCSEEEEEEECS
T ss_pred             cccccCCCccCCchhHHHHhcceEEEEEecC
Confidence                           1355678888888753

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.34  E-value=8.7e-13  Score=112.63  Aligned_cols=78  Identities=9%  Similarity=0.021  Sum_probs=58.0

Q ss_pred             cCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccc
Q psy5297          94 RGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVI  168 (185)
Q Consensus        94 ~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~  168 (185)
                      ++++.||+||||+++||+++ .    +|+++|||||++++|+.....+... +..+.+ .+.++|++||+......||++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~~-~~~~~ii~th~~~~~~~~d~~  406 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRRHRN-PDLQFIVISLKNTMFEKSDAL  406 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHHHCB-TTBEEEEECSCHHHHTTCSEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHH-HHHHhc-CCCEEEEEECCHHHHHhCCEE
Confidence            34567999999999999998 3    6999999999555544443333332 244433 378999999997777889999


Q ss_pred             cceee
Q psy5297         169 PTFRN  173 (185)
Q Consensus       169 ~~l~~  173 (185)
                      +.|..
T Consensus       407 ~~~~~  411 (430)
T 1w1w_A          407 VGVYR  411 (430)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.30  E-value=9.3e-13  Score=103.22  Aligned_cols=114  Identities=11%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHH-HHHH---HH---------------HhhCceecCCCCCcchhhHHHhhcCccccc
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---FL---------------AQIGCFVPCDSATISVVDQIFTRVGAADSQ   92 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---~~---------------~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~   92 (185)
                      ..++|++++|+||||||||||+|+| |...   +.               ..++ |+||++..+   ..+...-.+.+..
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~-y~fq~~~~f---~~~~~~~~f~E~~   87 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEH-YFFVNHDEF---KEMISRDAFLEHA   87 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTT-BEECCHHHH---HHHHHTTCEEEEE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCce-EEECCHHHH---HHHHhcCHHHHHH
Confidence            3578999999999999999999999 4321   10               0122 444443211   1111100000111


Q ss_pred             ccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHH
Q psy5297          93 YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIAL  163 (185)
Q Consensus        93 ~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~  163 (185)
                      .- ...+.+--++  .+..++..++++|||        +|.....+.. +.+.  .+.+|+++||+ .++.+
T Consensus        88 ~~-~~~~yg~~~~--~v~~~l~~G~illLD--------LD~~~~~~i~-~~l~--~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A           88 EV-FGNYYGTSRE--AIEQVLATGVDVFLD--------IDWQGAQQIR-QKMP--HARSIFILPPSKIELDR  145 (219)
T ss_dssp             EE-TTEEEEEEHH--HHHHHHTTTCEEEEE--------CCHHHHHHHH-HHCT--TCEEEEEECSSHHHHHH
T ss_pred             HH-HhccCCCCHH--HHHHHHhcCCeEEEE--------ECHHHHHHHH-HHcc--CCEEEEEECCCHHHHHH
Confidence            00 0111110111  233445778999999        6766665533 4443  48899999998 55544

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.26  E-value=1.9e-11  Score=95.59  Aligned_cols=58  Identities=12%  Similarity=0.039  Sum_probs=38.4

Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHH---HHHHHHHhcCCCeEEEecCh-hH--------HHHhhccccceee
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMAC---SIARELASNRQPFTLFATHF-HE--------IALLSRVIPTFRN  173 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~---~il~~l~~~~~~~vii~tH~-~~--------~~~~~d~~~~l~~  173 (185)
                      .+|+++++|+|+....+ |.....+   .+.+.+++ .+++|++++|. .+        +...||.++.++.
T Consensus       127 ~~~~~vviD~~~~l~~~-~~~~~~~~l~~l~~~~~~-~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYIN-KPAMARSIILQLKRVLAG-TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTT-CGGGHHHHHHHHHHHHHH-TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcC-CHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            57999999999765522 3322222   23333344 69999999996 44        4678899998875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.24  E-value=1.1e-11  Score=107.40  Aligned_cols=126  Identities=18%  Similarity=0.189  Sum_probs=74.1

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH-------------------------H--HHhhCceecCCCCCcc-
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-------------------------F--LAQIGCFVPCDSATIS-   77 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~-------------------------~--~~~~g~~v~~~~~~~~-   77 (185)
                      .+++||++++|++++|+||||||||||+++|....                         +  +..++ |++|.....+ 
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~-vV~Q~~~~~p~  361 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VIAQHTGADSA  361 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCC-EECCSTTCCHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCce-EEecccCcCHH
Confidence            46899999999999999999999999999992211                         1  12344 7887653222 


Q ss_pred             --hhhHHHhh--cCcc----ccccc--CcCccHHHHHHHHHHHHhC--CCC-eEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297          78 --VVDQIFTR--VGAA----DSQYR--GISTFMMEMKETATVIKKC--TEN-SLVIIDELGRGTSTFDGFGMACSIAREL  144 (185)
Q Consensus        78 --~~~~~l~~--~~l~----~~~~~--~~~~lS~g~~q~~~ia~~l--~~p-~llllDEP~~g~~~~d~~~~~~~il~~l  144 (185)
                        +.+++...  -+.+    +...+  .-..+....++++.+++++  ..| .++|...++.|   .+   .... ++.+
T Consensus       362 ~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG---q~---al~~-ak~f  434 (503)
T 2yhs_A          362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG---QN---AVSQ-AKLF  434 (503)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT---HH---HHHH-HHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc---HH---HHHH-HHHH
Confidence              22222110  0111    11111  1123555667888888866  456 45555557333   22   2222 2445


Q ss_pred             HhcCCCeEEEecChh
Q psy5297         145 ASNRQPFTLFATHFH  159 (185)
Q Consensus       145 ~~~~~~~vii~tH~~  159 (185)
                      ++..+.+.+++||..
T Consensus       435 ~~~~~itgvIlTKLD  449 (503)
T 2yhs_A          435 HEAVGLTGITLTKLD  449 (503)
T ss_dssp             HHHTCCSEEEEECGG
T ss_pred             HhhcCCCEEEEEcCC
Confidence            544689999999953

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.22  E-value=1.1e-10  Score=95.23  Aligned_cols=135  Identities=16%  Similarity=0.154  Sum_probs=82.2

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHH--H-hhCceecCCCCCcchhhHH---HhhcCcccccccCcCccHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFL--A-QIGCFVPCDSATISVVDQI---FTRVGAADSQYRGISTFMMEMKETA  107 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~--~-~~g~~v~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~lS~g~~q~~  107 (185)
                      .+|++++++||||+||||+++.|+...-.  + ++. ++.++.......+.+   .+..++.....     .+. ..-+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~-lv~~D~~r~~a~eqL~~~~~~~gl~~~~~-----~~~-~~l~~  175 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA-FITTDTYRIAAVEQLKTYAELLQAPLEVC-----YTK-EEFQQ  175 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE-EEECCCSSTTHHHHHHHHHTTTTCCCCBC-----SSH-HHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE-EEecCcccchHHHHHHHHHHhcCCCeEec-----CCH-HHHHH
Confidence            47899999999999999999999654332  2 233 777776443333322   23334322111     112 22244


Q ss_pred             HHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh--cCCCeEEE-ecCh-hHHHHhhccccceeeeeEEEE
Q psy5297         108 TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELAS--NRQPFTLF-ATHF-HEIALLSRVIPTFRNVHESKY  179 (185)
Q Consensus       108 ~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~--~~~~~vii-~tH~-~~~~~~~d~~~~l~~g~i~~~  179 (185)
                      +++++ .+|+++|+|  |+|.++.+...+.+ +.+.+..  ..+..+++ +||. .++.++++++..+..+.++..
T Consensus       176 al~~~-~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          176 AKELF-SEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             HHHHG-GGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred             HHHHh-cCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence            55544 889999999  66787776544433 2222221  11334455 5887 788889998887777777653

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.22  E-value=3.1e-13  Score=102.38  Aligned_cols=88  Identities=11%  Similarity=0.092  Sum_probs=52.8

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHH------HH-----HH-----hhCceecCCCC-CcchhhHHHh----------
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVS------VF-----LA-----QIGCFVPCDSA-TISVVDQIFT----------   84 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i------~~-----~~-----~~g~~v~~~~~-~~~~~~~~l~----------   84 (185)
                      .+++|++++|+|||||||||++|+|...      .+     ..     ....|++|... ..++.+.+..          
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~   84 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY   84 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCC
Confidence            4688999999999999999999999321      11     00     01124544321 1111111110          


Q ss_pred             ---------hcCccccc--ccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297          85 ---------RVGAADSQ--YRGISTFMMEMKETATVIKKC-TENSLV  119 (185)
Q Consensus        85 ---------~~~l~~~~--~~~~~~lS~g~~q~~~ia~~l-~~p~ll  119 (185)
                               .+++....  +.++..+|.|++|++.++|++ .+|+++
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l  131 (191)
T 1zp6_A           85 FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL  131 (191)
T ss_dssp             EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred             eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence                     01111111  345678999999999999999 877655

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.20  E-value=4.5e-12  Score=103.31  Aligned_cols=97  Identities=12%  Similarity=0.059  Sum_probs=63.2

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHHH----hhCceecCCCCCcch-----------------------------hh
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIGCFVPCDSATISV-----------------------------VD   80 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~----~~g~~v~~~~~~~~~-----------------------------~~   80 (185)
                      +++.+++|.||+|||||||.+.|....-..    ....+|+++...++.                             +.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~  108 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ  108 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence            568899999999999999999995433211    133244666543331                             11


Q ss_pred             HHHhhcCcc------c--ccccCcCccHHHHHHHHHHH--HhCCCCeEEEEeCCCCCCCcC
Q psy5297          81 QIFTRVGAA------D--SQYRGISTFMMEMKETATVI--KKCTENSLVIIDELGRGTSTF  131 (185)
Q Consensus        81 ~~l~~~~l~------~--~~~~~~~~lS~g~~q~~~ia--~~l~~p~llllDEP~~g~~~~  131 (185)
                      +.+..+...      +  .....-..+|+||+||+.+|  +++ +|+++|+|||++++++.
T Consensus       109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCC
T ss_pred             HHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCcc
Confidence            112222111      1  01233457899999999887  555 99999999998888774

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.16  E-value=2.4e-12  Score=96.01  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=34.2

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      +.+++++||++++|++++|+||||||||||+|+|...
T Consensus        20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5689999999999999999999999999999999543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.16  E-value=9.8e-13  Score=108.31  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=38.0

Q ss_pred             ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhh
Q psy5297          98 TFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLS  165 (185)
Q Consensus        98 ~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~  165 (185)
                      ++|+||+|++..++++ .+|+++  |||         ..+...+ +.++  .+.+|+++||. .++..+.
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l-~~l~--~~~~ii~~sh~~~~~~~l~  196 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERL-ARIN--ARAPVYTVTHGDIDLGLLF  196 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHH-HHHC--SSSCEEECCSSCCCGGGGS
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHH-HHhC--CCCeEEEecccCCCHHHHh
Confidence            7899999998777776 777766  777         3444433 5553  48999999996 5544443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.16  E-value=1.5e-11  Score=102.91  Aligned_cols=86  Identities=9%  Similarity=0.002  Sum_probs=61.8

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH---------HHHHHH-H---------hhCceecCCCCCc---------
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI---------GVSVFL-A---------QIGCFVPCDSATI---------   76 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i---------G~i~~~-~---------~~g~~v~~~~~~~---------   76 (185)
                      -++++++.+ +|++++|+||||+|||||+|+|         |.|.+. +         +++ ++||....+         
T Consensus       205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~-~v~q~~~l~dtpgv~e~~  282 (358)
T 2rcn_A          205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLY-HFPHGGDVIDSPGVREFG  282 (358)
T ss_dssp             THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEE-ECTTSCEEEECHHHHTCC
T ss_pred             CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEE-EECCCCEecCcccHHHhh
Confidence            356666654 6999999999999999999999         333332 1         223 666654111         


Q ss_pred             ----c------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          77 ----S------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        77 ----~------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                          +      .+.++++.+++.+..++.+.++| ||+||+++|+++
T Consensus       283 l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          283 LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence                1      24566778888888999999999 999999999874

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.15  E-value=1.4e-10  Score=96.66  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=78.7

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHH-HHHHHHhhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIG-VSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETAT  108 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG-~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~  108 (185)
                      .+++|+++.|.||||+|||||+..+. .+.-......|+..+.. +..  .....++...  ..-..+  .+..  +.+.
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~~--~~a~~lG~~~~~l~i~~~--~~~e--~~l~  129 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LDP--EYAKKLGVDTDSLLVSQP--DTGE--QALE  129 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCH--HHHHHTTCCGGGCEEECC--SSHH--HHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cCH--HHHHHcCCCHHHeEEecC--CCHH--HHHH
Confidence            35689999999999999999988874 33222112235555432 111  1234455431  111111  1222  3345


Q ss_pred             HHHhC---CCCeEEEEeCCCCCCCcC-------Ch----h--HHHHHHHHHH---HhcCCCeEEEecCh-hH--------
Q psy5297         109 VIKKC---TENSLVIIDELGRGTSTF-------DG----F--GMACSIAREL---ASNRQPFTLFATHF-HE--------  160 (185)
Q Consensus       109 ia~~l---~~p~llllDEP~~g~~~~-------d~----~--~~~~~il~~l---~~~~~~~vii~tH~-~~--------  160 (185)
                      +++.+   .+|+++++|||++.+...       |.    .  .+.+.+ ..+   .++.+++||+++|. ..        
T Consensus       130 ~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l-~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p  208 (349)
T 2zr9_A          130 IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL-RKMTGALNNSGTTAIFINELREKIGVMFGSP  208 (349)
T ss_dssp             HHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH-HHHHHHHHHHTCEEEEEEECC----------
T ss_pred             HHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH-HHHHHHHHHhCCEEEEEeccccccCcccCCC
Confidence            55544   459999999997665210       11    1  122222 333   23369999999995 31        


Q ss_pred             --------HHHhhccccceeeeeEEE
Q psy5297         161 --------IALLSRVIPTFRNVHESK  178 (185)
Q Consensus       161 --------~~~~~d~~~~l~~g~i~~  178 (185)
                              +..+||.++.++.+++..
T Consensus       209 ~~~~gg~~l~~~ad~~l~lrr~~~~k  234 (349)
T 2zr9_A          209 ETTTGGKALKFYASVRLDVRRIETLK  234 (349)
T ss_dssp             -CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred             cccCCchHhhhccceEEEEEEeeeee
Confidence                    456788888888766543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.14  E-value=8.6e-11  Score=97.27  Aligned_cols=119  Identities=16%  Similarity=0.099  Sum_probs=66.1

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHH-------------------------HHhhCc-eecCCCCCcc---hhhHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------------------------LAQIGC-FVPCDSATIS---VVDQI   82 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-------------------------~~~~g~-~v~~~~~~~~---~~~~~   82 (185)
                      ..++|++++|+|||||||||+++.|....-                         ..+++. +++|.....+   +.+++
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            347899999999999999999999933211                         122332 5566543322   23332


Q ss_pred             Hhh--cCccc-ccccC-cCc-cHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297          83 FTR--VGAAD-SQYRG-IST-FMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT  156 (185)
Q Consensus        83 l~~--~~l~~-~~~~~-~~~-lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t  156 (185)
                      ...  -+.+. ..+.. ... -..-+.+...+++++ .++++++||.+   +.    ......+ +.+.+..+.++|++|
T Consensus       205 ~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~---t~----~~~~~~~-~~~~~~~~it~iilT  276 (328)
T 3e70_C          205 QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDAL---AG----NAIVEQA-RQFNEAVKIDGIILT  276 (328)
T ss_dssp             HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGG---GT----THHHHHH-HHHHHHSCCCEEEEE
T ss_pred             HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecH---HH----HHHHHHH-HHHHHhcCCCEEEEe
Confidence            210  01000 01110 000 011123334488888 88999999977   32    2233323 555544689999999


Q ss_pred             Ch
Q psy5297         157 HF  158 (185)
Q Consensus       157 H~  158 (185)
                      |.
T Consensus       277 Kl  278 (328)
T 3e70_C          277 KL  278 (328)
T ss_dssp             CG
T ss_pred             Cc
Confidence            95

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.13  E-value=8.8e-11  Score=96.33  Aligned_cols=93  Identities=22%  Similarity=0.168  Sum_probs=62.7

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC--ceecCCCCCcch---hhHHHhhcCcccccccCcCccHHH
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATISV---VDQIFTRVGAADSQYRGISTFMME  102 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g--~~v~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~lS~g  102 (185)
                      .++++.+++++++++|||||||||+++.|+...-. +-+  .++..+......   +..+.+..++.-     ....|++
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-----~~~~s~~  169 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATV-----ISHSEGA  169 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-----ECCSTTC
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcE-----EecCCcc
Confidence            45666788999999999999999999999654321 211  134444322221   233445555542     2345678


Q ss_pred             HHHHH---HHHHhC-CCCeEEEEeCCCC
Q psy5297         103 MKETA---TVIKKC-TENSLVIIDELGR  126 (185)
Q Consensus       103 ~~q~~---~ia~~l-~~p~llllDEP~~  126 (185)
                      +.+++   ++++++ .+|+++|+|||..
T Consensus       170 ~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          170 DPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            88888   788888 9999999999953

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.11  E-value=1.8e-10  Score=98.98  Aligned_cols=153  Identities=9%  Similarity=0.006  Sum_probs=90.6

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-h-hCceecCCCCCcchhhHH-------------------
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-Q-IGCFVPCDSATISVVDQI-------------------   82 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~-~g~~v~~~~~~~~~~~~~-------------------   82 (185)
                      ..|+++...+.+|++++|.|++|+|||||+..+..-.... . -..|+.-+.........+                   
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~  270 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTP  270 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence            3677777779999999999999999999999884332221 1 111332221111111111                   


Q ss_pred             ---------HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC-----ChhHHHHHH--HHHHH
Q psy5297          83 ---------FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF-----DGFGMACSI--ARELA  145 (185)
Q Consensus        83 ---------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~-----d~~~~~~~i--l~~l~  145 (185)
                               +..++.....-.....+|.++.+...-.... .+|+++++|++..-....     +...+.+..  ++.++
T Consensus       271 ~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA  350 (454)
T 2r6a_A          271 EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA  350 (454)
T ss_dssp             HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence                     1111111112223356788877643322223 689999999997765432     222223322  45666


Q ss_pred             hcCCCeEEEecCh-----------h---------HHHHhhccccceeeeeE
Q psy5297         146 SNRQPFTLFATHF-----------H---------EIALLSRVIPTFRNVHE  176 (185)
Q Consensus       146 ~~~~~~vii~tH~-----------~---------~~~~~~d~~~~l~~g~i  176 (185)
                      ++.+++||+++|-           .         .+...||.+++|+.++.
T Consensus       351 ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          351 RELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             HHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             HHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            5579999999991           1         36778999999987654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.09  E-value=1.1e-12  Score=101.43  Aligned_cols=41  Identities=20%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHH--HhhCceecCCCC
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--AQIGCFVPCDSA   74 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~--~~~g~~v~~~~~   74 (185)
                      .++|++++|+||||||||||+|+|....--  ...+ +++++..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g-~v~~d~~   61 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAE-VVPMDGF   61 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEE-EEESGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceE-EEecCCC
Confidence            478999999999999999999999543321  1244 6666553

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.08  E-value=2e-11  Score=96.51  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++++|+||||||||||+|+|
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~L   47 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRI   47 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHH
Confidence            4689999999999999999999

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.04  E-value=1.9e-10  Score=95.38  Aligned_cols=35  Identities=29%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +.++++++|++.+|++++|+||||||||||+++|.
T Consensus        42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999999999999999999999994

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.01  E-value=3.3e-10  Score=93.43  Aligned_cols=50  Identities=16%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc-CCCeEEEecCh-hHH-HHhhccc
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASN-RQPFTLFATHF-HEI-ALLSRVI  168 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~-~~~~vii~tH~-~~~-~~~~d~~  168 (185)
                      .+|+++++|||.+    +|...... +++.+.+. .+.++|++||+ ..+ ..+..|+
T Consensus       133 ~~~~vlilDE~~~----L~~~~~~~-L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~  185 (354)
T 1sxj_E          133 HRYKCVIINEANS----LTKDAQAA-LRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC  185 (354)
T ss_dssp             -CCEEEEEECTTS----SCHHHHHH-HHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS
T ss_pred             CCCeEEEEeCccc----cCHHHHHH-HHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc
Confidence            6899999999944    55443333 33444431 36789999997 432 3344554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.91  E-value=1.7e-12  Score=104.88  Aligned_cols=118  Identities=8%  Similarity=-0.006  Sum_probs=72.1

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-------------------HHhhCceecCCC----CCcchh
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------------------LAQIGCFVPCDS----ATISVV   79 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-------------------~~~~g~~v~~~~----~~~~~~   79 (185)
                      ..+++++++.+++|  ++|+||||+|||||+|+|....-                   ...++ ++++..    ..+.++
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~-~vf~~a~~~~p~i~~~  109 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVR-QVFQRAKNSAPCVIFF  109 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHH-HHHHHHHHTCSEEEEE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHH-HHHHHHHhcCCCeEee
Confidence            45789999999999  99999999999999999933210                   01122 333321    001111


Q ss_pred             hHHHhhc---------CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC---------CCcCChhHHHHHH
Q psy5297          80 DQIFTRV---------GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG---------TSTFDGFGMACSI  140 (185)
Q Consensus        80 ~~~l~~~---------~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g---------~~~~d~~~~~~~i  140 (185)
                      +++-...         ......++.+.+||+||+|+..+++++ .+|+++  ||++.-         +...|.....+ +
T Consensus       110 Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~-i  186 (274)
T 2x8a_A          110 DEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLA-I  186 (274)
T ss_dssp             ETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHH-H
T ss_pred             ehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHH-H
Confidence            2111100         011223455678999999999999999 999874  998541         34456555544 3


Q ss_pred             HHHHHh
Q psy5297         141 ARELAS  146 (185)
Q Consensus       141 l~~l~~  146 (185)
                      ++.+.+
T Consensus       187 l~~~~~  192 (274)
T 2x8a_A          187 LKTITK  192 (274)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            455543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.91  E-value=3.7e-09  Score=86.15  Aligned_cols=97  Identities=13%  Similarity=0.065  Sum_probs=57.9

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC--ceecCCCCCcch---hhHHHhhcCcccccccCcCccHH
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATISV---VDQIFTRVGAADSQYRGISTFMM  101 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g--~~v~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~lS~  101 (185)
                      ++++|+  +|++++++|+||+||||+++.++...-. .-+  .++..+......   +..+.+..++.-.....  ....
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~--~~~p  165 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD--GESP  165 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT--TCCH
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCC--CCCH
Confidence            678887  8999999999999999999999654322 111  133333221111   12233444443221100  1112


Q ss_pred             HHHHHHHHHHhC-CCCeEEEEeCC-CCCC
Q psy5297         102 EMKETATVIKKC-TENSLVIIDEL-GRGT  128 (185)
Q Consensus       102 g~~q~~~ia~~l-~~p~llllDEP-~~g~  128 (185)
                      ...++.+++.+. .+++++|+||| +.++
T Consensus       166 ~~l~~~~l~~~~~~~~D~viiDtpp~~~~  194 (295)
T 1ls1_A          166 ESIRRRVEEKARLEARDLILVDTAGRLQI  194 (295)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCCCSSC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCccc
Confidence            233567787776 89999999999 5554

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.90  E-value=2.9e-10  Score=88.86  Aligned_cols=36  Identities=11%  Similarity=0.016  Sum_probs=22.5

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH-HH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG-VS   59 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG-~i   59 (185)
                      ....++||++++|++++|+||||||||||+++|. ..
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4679999999999999999999999999999997 54

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.87  E-value=1.2e-10  Score=87.77  Aligned_cols=106  Identities=19%  Similarity=0.109  Sum_probs=60.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHH---------------------------HHH-HhhCc---eecCCCCCc-c-------
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVS---------------------------VFL-AQIGC---FVPCDSATI-S-------   77 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i---------------------------~~~-~~~g~---~v~~~~~~~-~-------   77 (185)
                      ++++|+|+||||||||++.|...                           .++ .+++.   +++|+...+ .       
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~   82 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG   82 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence            57999999999999999999211                           111 23441   455554221 0       


Q ss_pred             -hhhHHHhh-c-CcccccccCcCccHHHHHHHHHHHHhC-CCCeEE-------EEeCCCCC---CCcCChhHHHHHHHHH
Q psy5297          78 -VVDQIFTR-V-GAADSQYRGISTFMMEMKETATVIKKC-TENSLV-------IIDELGRG---TSTFDGFGMACSIARE  143 (185)
Q Consensus        78 -~~~~~l~~-~-~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll-------llDEP~~g---~~~~d~~~~~~~il~~  143 (185)
                       .+++++.. + +++-...   ..||+||+||++|||++ .+|++.       .=|.|..+   ++.-|...+...+.+.
T Consensus        83 a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~  159 (171)
T 2f1r_A           83 NDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSL  159 (171)
T ss_dssp             TCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHH
T ss_pred             hCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHH
Confidence             12233332 2 2221122   23999999999999998 887652       23555221   1223455566655555


Q ss_pred             HH
Q psy5297         144 LA  145 (185)
Q Consensus       144 l~  145 (185)
                      +.
T Consensus       160 ~~  161 (171)
T 2f1r_A          160 LR  161 (171)
T ss_dssp             HT
T ss_pred             Hh
Confidence            44

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.85  E-value=1.1e-09  Score=83.41  Aligned_cols=29  Identities=14%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      |+++++|++++|+||||||||||+++|..
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHh
Confidence            56778999999999999999999999944

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.79  E-value=2.9e-09  Score=92.22  Aligned_cols=33  Identities=24%  Similarity=0.106  Sum_probs=31.3

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ..+++++||++++ ++++|+|||||||||||++|
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l   49 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGF   49 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHH
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHH
Confidence            3479999999999 99999999999999999999

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.77  E-value=5.6e-08  Score=81.20  Aligned_cols=136  Identities=11%  Similarity=0.105  Sum_probs=74.7

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                      +++|+++.|.||||+|||||+..+...... .....|+..+......   ..+++++....-......+..  +.+.+++
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~~~l~i~~~~~~e--~~l~~~~  132 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVDLKSLLISQPDHGE--QALEIVD  132 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCCGGGCEEECCSSHH--HHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCchhhhhhhhccCHH--HHHHHHH
Confidence            578999999999999999999998532221 1111266544322211   445555532111111122222  2333444


Q ss_pred             hC---CCCeEEEEeCCCCCCC--cC-----Ch------hHHHHHH--HHHHHhcCCCeEEEecCh-hH------------
Q psy5297         112 KC---TENSLVIIDELGRGTS--TF-----DG------FGMACSI--ARELASNRQPFTLFATHF-HE------------  160 (185)
Q Consensus       112 ~l---~~p~llllDEP~~g~~--~~-----d~------~~~~~~i--l~~l~~~~~~~vii~tH~-~~------------  160 (185)
                      .+   ..|+++++|+..+=..  .+     +.      ..+.+.+  +..+.++.+.+||++.|- ..            
T Consensus       133 ~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~  212 (356)
T 3hr8_A          133 ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTT  212 (356)
T ss_dssp             HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCT
T ss_pred             HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCC
Confidence            32   5799999999743332  00     10      1122222  345555579999998885 11            


Q ss_pred             ----HHHhhccccceee
Q psy5297         161 ----IALLSRVIPTFRN  173 (185)
Q Consensus       161 ----~~~~~d~~~~l~~  173 (185)
                          +..++|.++.++.
T Consensus       213 GG~~l~h~~~~rl~l~k  229 (356)
T 3hr8_A          213 GGLALKFYATMRMEVRR  229 (356)
T ss_dssp             HHHHHHHHCSEEEEEEE
T ss_pred             CcchhhhhCcEEEEEEe
Confidence                3456777777775

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.73  E-value=5e-10  Score=92.48  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             ceeeeceEEEeeCCc-------eeEEEEccCCCcHHHHHHHHH
Q psy5297          22 VSYIPNDVYFKSGEV-------SFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        22 ~~~il~~isl~i~~g-------~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      ...+++++++.++.|       +.++|+||||+|||||+|+|+
T Consensus        30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia   72 (334)
T 1in4_A           30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA   72 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHH
Confidence            345888999998877       899999999999999999993

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.70  E-value=1.2e-08  Score=88.24  Aligned_cols=112  Identities=14%  Similarity=0.087  Sum_probs=63.2

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMK  104 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~  104 (185)
                      .+.++++.+++|  +.|+||+|+|||||+|+|+.-.   ..- ++.-..      .++.         ....+  .++++
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~---~~~-f~~is~------~~~~---------~~~~g--~~~~~   96 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA---NVP-FFHISG------SDFV---------ELFVG--VGAAR   96 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH---TCC-EEEEEG------GGTT---------TCCTT--HHHHH
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc---CCC-eeeCCH------HHHH---------HHHhc--ccHHH
Confidence            445666777777  8899999999999999995421   111 111100      0000         11111  25667


Q ss_pred             HHHHHHHhC-CCCeEEEEeCCCCC-------CCcCChh--HHHHHHHHHHH---hcCCCeEEEecChh
Q psy5297         105 ETATVIKKC-TENSLVIIDELGRG-------TSTFDGF--GMACSIARELA---SNRQPFTLFATHFH  159 (185)
Q Consensus       105 q~~~ia~~l-~~p~llllDEP~~g-------~~~~d~~--~~~~~il~~l~---~~~~~~vii~tH~~  159 (185)
                      .|..+.++. ..|.+|++||+-+-       +...+..  .....++..+.   ...+..||.+||..
T Consensus        97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~  164 (476)
T 2ce7_A           97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP  164 (476)
T ss_dssp             HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred             HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence            777788887 89999999999431       1122211  12222334442   22366788899974

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.68  E-value=3.1e-08  Score=90.35  Aligned_cols=136  Identities=14%  Similarity=0.101  Sum_probs=76.6

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHH-HHHHHHhhCc---ee-cCCCCCcchhhHHHhhcCcc------------c--ccc
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIG-VSVFLAQIGC---FV-PCDSATISVVDQIFTRVGAA------------D--SQY   93 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG-~i~~~~~~g~---~v-~~~~~~~~~~~~~l~~~~l~------------~--~~~   93 (185)
                      +..|+.++++|||||||||++.++- ...+....+.   ++ |........++.+...++..            +  ..+
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~  185 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNK  185 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTT
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCC
Confidence            4567899999999999999877771 1111110011   11 21111111222222222211            0  123


Q ss_pred             cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh-c-CCCeEEE-ecCh-hHHHHhhccc
Q psy5297          94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS-N-RQPFTLF-ATHF-HEIALLSRVI  168 (185)
Q Consensus        94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~-~-~~~~vii-~tH~-~~~~~~~d~~  168 (185)
                      ..+.-++.|+.++..+++.+ .+++++++|||..  -.+|.......+ +.+.+ . ...++++ +||+ ..+.++.+..
T Consensus       186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~--R~ld~d~~~~~l-~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~  262 (773)
T 2xau_A          186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE--RTLATDILMGLL-KQVVKRRPDLKIIIMSATLDAEKFQRYFNDA  262 (773)
T ss_dssp             CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG--CCHHHHHHHHHH-HHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred             CCEEEECHHHHHHHHhhCccccCCCEEEecCccc--cccchHHHHHHH-HHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence            44567899999999988887 9999999999942  134544333322 33322 1 2345666 5998 7777777654


Q ss_pred             cce
Q psy5297         169 PTF  171 (185)
Q Consensus       169 ~~l  171 (185)
                      .++
T Consensus       263 ~vi  265 (773)
T 2xau_A          263 PLL  265 (773)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            433

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.67  E-value=1.4e-08  Score=76.15  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++++++.+| +++|+||||||||||+++|..
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            6889999988 999999999999999999943

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.67  E-value=1.5e-09  Score=94.56  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=27.5

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.+++++.++..++|.|++||||||++++|
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~l  187 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGVNAM  187 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHHHHH
Confidence            357888889999999999999999999998

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=1.2e-08  Score=77.80  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=22.6

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +..++++|+||++.+|++++|+||+||||||+.+.|..
T Consensus        10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             --------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34679999999999999999999999999999999943

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.63  E-value=7.5e-11  Score=99.80  Aligned_cols=60  Identities=10%  Similarity=-0.031  Sum_probs=41.7

Q ss_pred             CC--eEEEEeCCCCCCCcCChhHHHHHH--HHHH-HhcCCCeEEEecCh-hHHHHhhcccc-ceeee-eEEEEe
Q psy5297         115 EN--SLVIIDELGRGTSTFDGFGMACSI--AREL-ASNRQPFTLFATHF-HEIALLSRVIP-TFRNV-HESKYL  180 (185)
Q Consensus       115 ~p--~llllDEP~~g~~~~d~~~~~~~i--l~~l-~~~~~~~vii~tH~-~~~~~~~d~~~-~l~~g-~i~~~~  180 (185)
                      +|  ++.++|||   +...|...+...+  ++.+ .+ .|.|++  +|. .++.++|+++. +|.+| +++..+
T Consensus       139 dP~~di~ildee---l~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~  206 (392)
T 1ni3_A          139 DPIRDLSIIVDE---LLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKG  206 (392)
T ss_dssp             CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGS
T ss_pred             Ccchhhhhchhh---hHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecC
Confidence            67  88888888   6667766554433  2333 32 466653  998 88899999998 89999 765443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.62  E-value=2.5e-09  Score=85.30  Aligned_cols=50  Identities=14%  Similarity=-0.000  Sum_probs=33.6

Q ss_pred             eEEEccc-CCceeeecCCceeeeceEEEeeCC---ceeEEEEccCCCcHHHHHHHHHH
Q psy5297           5 TLVLNQC-RHPIVELQGGVSYIPNDVYFKSGE---VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus         5 ~~~~~~~-~~~~l~~~~~~~~il~~isl~i~~---g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++++++ +..|    ++...+++|+||++.+   |++++|+|++||||||+.+.|..
T Consensus        17 ~l~~~~~~~~~~----~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           17 LLETGSLLHSPF----DEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEcceeeEEe----cCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4666666 5544    1235699999999999   99999999999999999999943

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.60  E-value=5.6e-08  Score=80.65  Aligned_cols=125  Identities=10%  Similarity=0.028  Sum_probs=76.9

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHH---hhcCcccccccCcCccH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIF---TRVGAADSQYRGISTFM  100 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~lS  100 (185)
                      -|+.+.-.+.+|+++.|.|++|+|||||+..+..-.... ....|+.-+-..-.....++   ..+++....   -+.||
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~---~g~Ls  111 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLE---SGRLD  111 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHH---HTCCC
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHh---cCCCC
Confidence            455555578999999999999999999998885432221 11113322211111222222   222222222   24799


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC-CCeEEEecCh
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNR-QPFTLFATHF  158 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~-~~~vii~tH~  158 (185)
                      .++.+++..|... .++++++.|+|..     +...+...+ ++++++. +..+|++.|.
T Consensus       112 ~~e~~~l~~a~~~l~~~~l~I~d~~~~-----si~~i~~~i-r~l~~~~gg~~lIVIDyL  165 (338)
T 4a1f_A          112 DDQWENLAKCFDHLSQKKLFFYDKSYV-----RIEQIRLQL-RKLKSQHKELGIAFIDYL  165 (338)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEECCTTC-----CHHHHHHHH-HHHHHHCTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCeEEeCCCCC-----cHHHHHHHH-HHHHHhcCCCCEEEEech
Confidence            9999999977766 7889999999932     234444433 5665545 7888888763

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.58  E-value=3.7e-09  Score=80.90  Aligned_cols=116  Identities=18%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCC-------CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDS-------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i  109 (185)
                      +++|+|||||||||+.+.|..      .|. ++..+.       ..-..+.++.+.+|....       .+.|+.+|..+
T Consensus         4 ~i~l~G~~GsGKST~~~~La~------lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~-------~~~g~~~r~~l   70 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD------LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQIL-------TEQGELNRAAL   70 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT------TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC-------------CHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH------CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHh-------ccCccccHHHH
Confidence            689999999999999999944      121 111110       011234455555653211       24567777777


Q ss_pred             HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHH--HHhhcccccee
Q psy5297         110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEI--ALLSRVIPTFR  172 (185)
Q Consensus       110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~--~~~~d~~~~l~  172 (185)
                      ++.. .+|.....+|-     ..++. ....+.+.+....+..+|+.+|. .+.  ...||.+++++
T Consensus        71 ~~~~f~~~~~~~~l~~-----~~~p~-v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~  131 (206)
T 1jjv_A           71 RERVFNHDEDKLWLNN-----LLHPA-IRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD  131 (206)
T ss_dssp             HHHHHTCHHHHHHHHH-----HHHHH-HHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred             HHHHhCCHHHHHHHHh-----ccCHH-HHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence            7765 66543222211     01111 11222233332235577778886 443  45677777664

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.57  E-value=2.1e-08  Score=76.79  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++|++++|+||||||||||+|+|..
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999999943

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.56  E-value=8.5e-09  Score=84.27  Aligned_cols=35  Identities=20%  Similarity=0.102  Sum_probs=31.6

Q ss_pred             eeeceEEEee-------------------CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          24 YIPNDVYFKS-------------------GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        24 ~il~~isl~i-------------------~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++++++++.+                   ++|++++|+||||||||||+++|..
T Consensus        49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4788888887                   8999999999999999999999944

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.53  E-value=3.8e-08  Score=74.78  Aligned_cols=28  Identities=21%  Similarity=0.230  Sum_probs=23.4

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++++|++++|+|||||||||+++.|..
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999999943

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.44  E-value=2.8e-07  Score=75.53  Aligned_cols=127  Identities=9%  Similarity=0.058  Sum_probs=75.3

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHh---hcCcccccccCcCccH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFT---RVGAADSQYRGISTFM  100 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lS  100 (185)
                      .|+++.-.+.+|+++.|.|+.|+|||||+..+..-.... .-..|+.-+...-.....++.   .+.+....+ ....||
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~-~~~~l~  135 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKA-ARRDFA  135 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHS-CHHHHC
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhc-CCCCCC
Confidence            466666568999999999999999999988884322211 111133332211112223322   222222221 112388


Q ss_pred             HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe--EEEecCh
Q psy5297         101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF--TLFATHF  158 (185)
Q Consensus       101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~--vii~tH~  158 (185)
                      .++++++..|... .++++++.|+|.     .+...+...+ +.+.++.+..  +|++.|.
T Consensus       136 ~~~~~~l~~a~~~l~~~~i~i~d~~~-----~~~~~i~~~i-~~l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          136 SEDWGKLSMAIGEISNSNINIFDKAG-----QSVNYIWSKT-RQTKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             SSCHHHHHHHHHHHHTSCEEEECCSC-----CBHHHHHHHH-HHHHHTSSSCCEEEEEECG
T ss_pred             HHHHHHHHHHHHHHhCCCEEEECCCC-----CCHHHHHHHH-HHHHHhcCCCCeEEEEeCc
Confidence            8888888877665 677899999883     2344454444 5555545777  8888774

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.42  E-value=1e-07  Score=71.60  Aligned_cols=24  Identities=8%  Similarity=0.011  Sum_probs=22.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +|++++|+||||||||||++.|..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999999944

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.42  E-value=2.9e-07  Score=75.77  Aligned_cols=121  Identities=7%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHHH---hhC-ceecCCC--CCcchhhHHHhhcCcccccccCcCccHHHH-HHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIG-CFVPCDS--ATISVVDQIFTRVGAADSQYRGISTFMMEM-KET  106 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~---~~g-~~v~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~-~q~  106 (185)
                      ..+..+.|.||+|+|||||++.+....-..   ... .++....  .....+..++..++...    +....+..+ .++
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~  118 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV----PFTGLSIAELYRR  118 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCC----CSSSCCHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHH
Confidence            457899999999999999999995432221   111 1222211  11123444444443321    111122222 222


Q ss_pred             HH-HHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH--hcCCCeEEEecChh
Q psy5297         107 AT-VIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA--SNRQPFTLFATHFH  159 (185)
Q Consensus       107 ~~-ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~--~~~~~~vii~tH~~  159 (185)
                      +. .+.....|.++++||+....+..+...+.. +++.+.  ...+.++|++||+.
T Consensus       119 l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~-l~~~~~~~~~~~~~~I~~~~~~  173 (386)
T 2qby_A          119 LVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYK-LSRINSEVNKSKISFIGITNDV  173 (386)
T ss_dssp             HHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHH-HHHHHHSCCC--EEEEEEESCG
T ss_pred             HHHHHhccCCeEEEEEcChhhhhccCcCHHHHH-HhhchhhcCCCeEEEEEEECCC
Confidence            22 222224599999999944332222232322 334442  22367788899963

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.41  E-value=6.1e-07  Score=74.19  Aligned_cols=116  Identities=7%  Similarity=-0.062  Sum_probs=60.8

Q ss_pred             Cce--eEEEEccCCCcHHHHHHHHHHHHHHH-hhC-ceecCCCC--CcchhhHHHhhcCcccccccCcCccHHHH-HHHH
Q psy5297          35 EVS--FNLVTGPNMGGKSTYIRSIGVSVFLA-QIG-CFVPCDSA--TISVVDQIFTRVGAADSQYRGISTFMMEM-KETA  107 (185)
Q Consensus        35 ~g~--~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g-~~v~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~g~-~q~~  107 (185)
                      .+.  .+.|.||+|+|||||++.+....... ... .++.+...  ....+..++..++...    +....+.++ .+++
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l  116 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF----PRRGLSRDEFLALL  116 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC----CSSCCCHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC----CCCCCCHHHHHHHH
Confidence            446  89999999999999999995432111 111 13332221  1234555555554321    111122221 2222


Q ss_pred             -HHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH--hc---CCCeEEEecChh
Q psy5297         108 -TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA--SN---RQPFTLFATHFH  159 (185)
Q Consensus       108 -~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~--~~---~~~~vii~tH~~  159 (185)
                       ..+.....|.++++||+..-    +...+.. +...+.  ..   .+.++|++||+.
T Consensus       117 ~~~l~~~~~~~vlilDE~~~l----~~~~~~~-L~~~~~~~~~~~~~~~~iI~~~~~~  169 (389)
T 1fnn_A          117 VEHLRERDLYMFLVLDDAFNL----APDILST-FIRLGQEADKLGAFRIALVIVGHND  169 (389)
T ss_dssp             HHHHHHTTCCEEEEEETGGGS----CHHHHHH-HHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             HHHHhhcCCeEEEEEECcccc----chHHHHH-HHHHHHhCCCCCcCCEEEEEEECCc
Confidence             22333366899999999333    4333332 323321  11   367888899974

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.41  E-value=1.2e-07  Score=72.40  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=22.1

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++.++|++++|+|||||||||++|+|.
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~   50 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVA   50 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            3566789999999999999999999994

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.40  E-value=1.3e-06  Score=74.59  Aligned_cols=100  Identities=15%  Similarity=0.036  Sum_probs=53.2

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhHH---HhhcCcccccccCcCccHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQI---FTRVGAADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~lS~g~~q~~~  108 (185)
                      ++.+++++||||+||||++..|+...-  ..|   .++..+......++.+   .+..++.-.......  ..-...+-+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~--dp~~i~~~a  171 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQ--NPIEIAKKG  171 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCS--CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccC--CHHHHHHHH
Confidence            579999999999999999999975432  222   1444443322222222   233343211111111  111112234


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                      ++.+. .+++++|+|+|...-.+.|...+.+
T Consensus       172 l~~a~~~~~DvvIIDTaGr~~~~~d~~lm~e  202 (433)
T 3kl4_A          172 VDIFVKNKMDIIIVDTAGRHGYGEETKLLEE  202 (433)
T ss_dssp             HHHTTTTTCSEEEEEECCCSSSCCTTHHHHH
T ss_pred             HHHHHhcCCCEEEEECCCCccccCCHHHHHH
Confidence            55555 7899999999943221155444433

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.38  E-value=7.4e-07  Score=73.30  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      +.+++|+.+++++++++||||+||||++..|+..
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999999999999654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.38  E-value=2.6e-07  Score=67.74  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=25.0

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      +.++++.+ .+.+|+|||||||||++.+|.-+.
T Consensus        16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence            34455554 589999999999999999996543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.36  E-value=1.3e-06  Score=72.35  Aligned_cols=127  Identities=12%  Similarity=0.071  Sum_probs=67.2

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-------HhhCceecCCCC-CcchhhHHHhhcCcccc--ccc-C-cCcc
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------AQIGCFVPCDSA-TISVVDQIFTRVGAADS--QYR-G-ISTF   99 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-------~~~g~~v~~~~~-~~~~~~~~l~~~~l~~~--~~~-~-~~~l   99 (185)
                      .+++|+++.|.||+|+|||||+..+..-...       .....|+..+.. ....+..++..++....  .++ . ....
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~  197 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY  197 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence            4689999999999999999999988532111       111125544432 22234445555554321  000 0 0111


Q ss_pred             HHHH-HHHHH----HHHhC-CCCeEEEEeCCCCCCCcC-C-------hh-HHHHHH--HHHHHhcCCCeEEEecCh
Q psy5297         100 MMEM-KETAT----VIKKC-TENSLVIIDELGRGTSTF-D-------GF-GMACSI--ARELASNRQPFTLFATHF  158 (185)
Q Consensus       100 S~g~-~q~~~----ia~~l-~~p~llllDEP~~g~~~~-d-------~~-~~~~~i--l~~l~~~~~~~vii~tH~  158 (185)
                      +.++ .+.+.    +++.. .+++++++|++++-.... +       .. .+.+.+  +..++++.+++||+++|.
T Consensus       198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~  273 (343)
T 1v5w_A          198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM  273 (343)
T ss_dssp             STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence            2222 22222    23333 579999999995432211 0       00 122222  344555579999999995

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.35  E-value=4.1e-08  Score=85.64  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+++++++.+++|+.++|+|||||||||||++|
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL  280 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAI  280 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHH
Confidence            367889999999999999999999999999998

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.34  E-value=1.1e-07  Score=77.33  Aligned_cols=30  Identities=17%  Similarity=0.096  Sum_probs=23.0

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHH--------HHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF   61 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~   61 (185)
                      ++..|++++|+||||||||||+|+|        |.+.+
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~  202 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  202 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence            4457899999999999999999999        66665

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.33  E-value=1.6e-07  Score=78.02  Aligned_cols=115  Identities=17%  Similarity=0.083  Sum_probs=63.0

Q ss_pred             CceeEEEEccCCCcHHHHHHHH-HHHHHHHhhCceecCCCCCcc--hh---hHHHhhcCcccccccCcCccHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQIGCFVPCDSATIS--VV---DQIFTRVGAADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~~v~~~~~~~~--~~---~~~l~~~~l~~~~~~~~~~lS~g~~q~~~  108 (185)
                      ..-.++++|+||+|||||++.+ |.-   ...+ ..|.......  .+   ..-+..++.....+.+...++.+++|.+.
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~---~~~~-~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  241 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK---PEIA-SYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAIL  241 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC---CEEE-CCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC---CccC-CCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHH
Confidence            3457999999999999999998 211   0111 0010000000  00   00112233333344566778899988776


Q ss_pred             HHHhC-CCCeEEEEe-CCCCCCCcCChhHHHHHHHHHHHhcC-CCeEEEec--Ch
Q psy5297         109 VIKKC-TENSLVIID-ELGRGTSTFDGFGMACSIARELASNR-QPFTLFAT--HF  158 (185)
Q Consensus       109 ia~~l-~~p~llllD-EP~~g~~~~d~~~~~~~il~~l~~~~-~~~vii~t--H~  158 (185)
                       +... .++-++++| +|..+   ++.......+ ..+.+.. +..++++.  ||
T Consensus       242 -~~~~~ad~illV~D~s~~~~---~~~~~~~~~~-~~i~~~~~~~piilV~NK~D  291 (357)
T 2e87_A          242 -ALRYLGNLIIYIFDPSEHCG---FPLEEQIHLF-EEVHGEFKDLPFLVVINKID  291 (357)
T ss_dssp             -GGGGTCSEEEEEECTTCTTS---SCHHHHHHHH-HHHHHHTTTSCEEEEECCTT
T ss_pred             -HHHhcCCEEEEEEeCCcccc---CCHHHHHHHH-HHHHHhcCCCCEEEEEECcc
Confidence             4444 788899999 88444   3434333333 3333212 66777766  66

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.33  E-value=4.4e-06  Score=69.64  Aligned_cols=137  Identities=12%  Similarity=0.115  Sum_probs=72.6

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETATV  109 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~i  109 (185)
                      +++|+++.|.||+|+|||||...+..-.... ....|+..+... ..  .....++...  ..-..+.  +..  +...+
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~-~~--~~a~~~g~~~~~l~i~~~~--~~e--~~~~~  132 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DP--IYARKLGVDIDNLLCSQPD--TGE--QALEI  132 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CH--HHHHHTTCCGGGCEEECCS--SHH--HHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc-cH--HHHHHcCCChhheeeeCCC--CHH--HHHHH
Confidence            6799999999999999999998874322221 112255554321 11  1234445431  1101111  122  23334


Q ss_pred             HHhC---CCCeEEEEeCCCCCCCcC-------C----hh--HHHHHH--HHHHHhcCCCeEEEecCh-hH----------
Q psy5297         110 IKKC---TENSLVIIDELGRGTSTF-------D----GF--GMACSI--ARELASNRQPFTLFATHF-HE----------  160 (185)
Q Consensus       110 a~~l---~~p~llllDEP~~g~~~~-------d----~~--~~~~~i--l~~l~~~~~~~vii~tH~-~~----------  160 (185)
                      ++.+   ..++++++|++..-....       +    ..  .+.+.+  +..+.++.+++||+++|. ..          
T Consensus       133 ~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~  212 (356)
T 1u94_A          133 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET  212 (356)
T ss_dssp             HHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------
T ss_pred             HHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcc
Confidence            4433   679999999995544211       1    01  112222  222234469999999995 32          


Q ss_pred             ------HHHhhccccceeeeeE
Q psy5297         161 ------IALLSRVIPTFRNVHE  176 (185)
Q Consensus       161 ------~~~~~d~~~~l~~g~i  176 (185)
                            +..++|-++.++..+.
T Consensus       213 ~~gG~~l~~~advrl~l~r~~~  234 (356)
T 1u94_A          213 TTGGNALKFYASVRLDIRRIGA  234 (356)
T ss_dssp             CTTCSHHHHHCSEEEEEEEEEE
T ss_pred             cCCCcceeeeccEEEEEEEeee
Confidence                  3446776666665543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.32  E-value=8.7e-08  Score=80.61  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=32.1

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+++++++++++|++++|+||||||||||+++|.
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~  190 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALL  190 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999999999999999994

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.30  E-value=3.1e-07  Score=70.59  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++|++++|+|||||||||+++.|..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHh
Confidence            5799999999999999999999943

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.29  E-value=1.2e-07  Score=72.30  Aligned_cols=35  Identities=20%  Similarity=0.094  Sum_probs=29.8

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      +.+..++..++|++++|+|||||||||++|.|...
T Consensus        14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45666777789999999999999999999999543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.28  E-value=7.6e-09  Score=91.86  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=34.1

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +...+++++++.+.+|+.++|+||||+|||||+++|..
T Consensus        45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence            34558899999999999999999999999999999954

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.27  E-value=1.7e-07  Score=79.79  Aligned_cols=30  Identities=33%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++++ +. .+|++++|+|||||||||||++|
T Consensus       158 ~L~~l-~~-~~ggii~I~GpnGSGKTTlL~al  187 (418)
T 1p9r_A          158 NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAG  187 (418)
T ss_dssp             HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHH
T ss_pred             HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHH
Confidence            66777 54 78999999999999999999999

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.27  E-value=1.5e-06  Score=74.41  Aligned_cols=102  Identities=12%  Similarity=0.107  Sum_probs=54.3

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                      +..+.|.||+|+|||||++.|+........+   .|+....    ....+...+.     .        +  ..-.+...
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~----~~~~~~~~~~-----~--------~--~~~~~~~~  190 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMK-----E--------G--KLNEFREK  190 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH----HHHHHHHHHH-----T--------T--CHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH----HHHHHHHHHH-----c--------c--cHHHHHHH
Confidence            4679999999999999999997644322111   1222111    0111111110     0        0  01123334


Q ss_pred             CC-CCeEEEEeCCCCCCCc-CChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         113 CT-ENSLVIIDELGRGTST-FDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       113 l~-~p~llllDEP~~g~~~-~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      +. +|++|++||+..-... .....+.. .++.+.+ .+..+|++||+
T Consensus       191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~-~~~~iIitt~~  236 (440)
T 2z4s_A          191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHD-SGKQIVICSDR  236 (440)
T ss_dssp             HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHT-TTCEEEEEESS
T ss_pred             hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHH-CCCeEEEEECC
Confidence            44 8999999999432221 01111222 2355554 58899999996

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.24  E-value=3.2e-07  Score=71.55  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=25.0

Q ss_pred             EEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          29 VYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        29 isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -+.+.++|++++|.|+|||||||++++|
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L   40 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHF   40 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTT
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence            3445688999999999999999999999

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.23  E-value=6.3e-07  Score=72.93  Aligned_cols=66  Identities=5%  Similarity=0.066  Sum_probs=38.8

Q ss_pred             cHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCC-hhHHHHHHHHHHHhcCCC--eEEEecCh-hHHHHhhcccc
Q psy5297          99 FMMEMKETATVIKKCTENSLVIIDELGRGTSTFD-GFGMACSIARELASNRQP--FTLFATHF-HEIALLSRVIP  169 (185)
Q Consensus        99 lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d-~~~~~~~il~~l~~~~~~--~vii~tH~-~~~~~~~d~~~  169 (185)
                      ++.+++.....++....|.++++    +.+|... ...+... ++.+.+..+.  .+.+++|+ ..+..+.+.+.
T Consensus       101 ~~~~~~~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~-l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~  170 (301)
T 1ega_A          101 WTPDDEMVLNKLREGKAPVILAV----NKVDNVQEKADLLPH-LQFLASQMNFLDIVPISAETGLNVDTIAAIVR  170 (301)
T ss_dssp             CCHHHHHHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHH-HHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEE----ECcccCccHHHHHHH-HHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence            88888755444443367888888    3455544 3333333 3666653453  55567776 66666666543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.23  E-value=6.2e-07  Score=66.52  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=22.7

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+|++++|+|||||||||+++.|..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999999999944

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.18  E-value=3e-07  Score=72.42  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=29.8

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++++++++++|  ++|+||||+|||||+|+|+.
T Consensus        39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence            4788899999998  99999999999999999954

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.17  E-value=8.9e-07  Score=68.03  Aligned_cols=28  Identities=11%  Similarity=-0.009  Sum_probs=23.0

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      |+...+|++++|+||||||||||++.|-
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~   40 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALL   40 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHH
Confidence            3444689999999999999999999984

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.17  E-value=5.7e-07  Score=73.28  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=23.2

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      ++..|++++|+||||||||||+|+|.
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH
Confidence            34578999999999999999999994

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.17  E-value=1.5e-06  Score=71.31  Aligned_cols=127  Identities=9%  Similarity=0.094  Sum_probs=67.6

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-------hhCceecCCCC-CcchhhHHHhhcCcccc--ccc-C-cCcc
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------QIGCFVPCDSA-TISVVDQIFTRVGAADS--QYR-G-ISTF   99 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-------~~g~~v~~~~~-~~~~~~~~l~~~~l~~~--~~~-~-~~~l   99 (185)
                      .+++|+++.|.||+|+|||||+..+..-....       ....|+..+.. ....+.+++..++....  .+. . ....
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~  182 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI  182 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence            46789999999999999999998885322111       11125544432 12334445555655321  000 0 1112


Q ss_pred             HHH-HHHHHHHHHhC----CCCeEEEEeCCCCCCCcC--------Chh-HHHHHH--HHHHHhcCCCeEEEecCh
Q psy5297         100 MME-MKETATVIKKC----TENSLVIIDELGRGTSTF--------DGF-GMACSI--ARELASNRQPFTLFATHF  158 (185)
Q Consensus       100 S~g-~~q~~~ia~~l----~~p~llllDEP~~g~~~~--------d~~-~~~~~i--l~~l~~~~~~~vii~tH~  158 (185)
                      +.. +.+.+..++.+    .+++++++|+.++-....        +.. .+.+.+  +..+.++.+++||++.|.
T Consensus       183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~  257 (324)
T 2z43_A          183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV  257 (324)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence            223 23344433332    479999999994422110        101 122222  344444469999999884

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.15  E-value=3e-07  Score=75.28  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=24.5

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++.+|++++|+||||+|||||+|+|
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L  193 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAI  193 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHH
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHh
Confidence            56778999999999999999999999

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.15  E-value=9.7e-07  Score=69.89  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=22.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|++++|+|||||||||++|+|
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~L   47 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKAL   47 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999999999

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.15  E-value=3.8e-07  Score=72.96  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=29.6

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++++++++++|  ++|+||||+|||||+++|+.
T Consensus        63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHH
Confidence            4678899999988  89999999999999999954

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.15  E-value=1.5e-06  Score=66.66  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=24.8

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      +.++++.+ .+.+|+|||||||||++.+|..+.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            34455554 699999999999999999995443

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.14  E-value=1.2e-06  Score=74.47  Aligned_cols=27  Identities=37%  Similarity=0.607  Sum_probs=24.3

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +++.+|++++|+|||||||||||++|.
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~   47 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAIS   47 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHH
Confidence            456779999999999999999999993

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.14  E-value=9.3e-07  Score=65.27  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++++|+|||||||||+++.|..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999943

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.14  E-value=9.1e-06  Score=65.11  Aligned_cols=72  Identities=21%  Similarity=0.191  Sum_probs=43.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      ++..+.|.||+|+||||+++.+..-.     +. ++.-               ...+.......  +.+++.+..+..+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~-----~~~~~~i---------------~~~~l~~~~~~--~~~~~~~~~~~~~~  110 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC-----SATFLNI---------------SAASLTSKYVG--DGEKLVRALFAVAR  110 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT-----TCEEEEE---------------ESTTTSSSSCS--CHHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEe---------------eHHHHhhcccc--hHHHHHHHHHHHHH
Confidence            46789999999999999999995421     21 1110               00111111122  23455555555555


Q ss_pred             -CCCeEEEEeCCCCCC
Q psy5297         114 -TENSLVIIDELGRGT  128 (185)
Q Consensus       114 -~~p~llllDEP~~g~  128 (185)
                       .+|.++++||+-+-.
T Consensus       111 ~~~~~vl~iDEid~l~  126 (297)
T 3b9p_A          111 HMQPSIIFIDEVDSLL  126 (297)
T ss_dssp             HTCSEEEEEETGGGTS
T ss_pred             HcCCcEEEeccHHHhc
Confidence             889999999995543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.12  E-value=8.8e-08  Score=75.24  Aligned_cols=27  Identities=30%  Similarity=0.332  Sum_probs=23.6

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      ++++++ ++++|+|||||||||||++|.
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~   48 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFV   48 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHH
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHh
Confidence            566665 899999999999999999993

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.12  E-value=1.1e-05  Score=62.94  Aligned_cols=126  Identities=17%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH-HHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV-SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~-i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                      .+|.++.++||-|+||||++..+.. ........ ++++......-...+..++|+.... ......    .+....++.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kV-li~~~~~d~r~~~~i~srlG~~~~~-~~~~~~----~~i~~~i~~   83 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKY-LVFKPKIDTRSIRNIQSRTGTSLPS-VEVESA----PEILNYIMS   83 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCE-EEEEECCCGGGCSSCCCCCCCSSCC-EEESST----HHHHHHHHS
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEE-EEEEeccCchHHHHHHHhcCCCccc-cccCCH----HHHHHHHHH
Confidence            4689999999999999998755532 21111112 3332111100112345555653211 112222    122222332


Q ss_pred             -C--CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC---------h--hHHHHhhcccccee
Q psy5297         113 -C--TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH---------F--HEIALLSRVIPTFR  172 (185)
Q Consensus       113 -l--~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH---------~--~~~~~~~d~~~~l~  172 (185)
                       +  .+++++++||-   -. ++.. ..+. +..+.. .+..||++-|         .  ..+..+||++.-|+
T Consensus        84 ~~~~~~~dvViIDEa---Q~-l~~~-~ve~-l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           84 NSFNDETKVIGIDEV---QF-FDDR-ICEV-ANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TTSCTTCCEEEECSG---GG-SCTH-HHHH-HHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             HhhCCCCCEEEEecC---cc-CcHH-HHHH-HHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence             2  46899999999   22 3433 3333 366666 5999999999         3  46777899887654

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=98.11  E-value=2.1e-05  Score=61.17  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.+|+.+++.||+||||||++..+
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~   96 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQF   96 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHH
Confidence            356899999999999999998876

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.10  E-value=1.7e-06  Score=66.06  Aligned_cols=26  Identities=15%  Similarity=0.156  Sum_probs=23.9

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++|.+++|+|+|||||||+++.|..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999999954

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.10  E-value=6.4e-06  Score=63.25  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+..+.|.||.|+|||||++.+..-
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            5788999999999999999999654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=98.06  E-value=2.7e-05  Score=66.47  Aligned_cols=127  Identities=11%  Similarity=0.060  Sum_probs=71.8

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh--hCceecCCCCCcchhhHHHh-hcCcccccccCcCccHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--IGCFVPCDSATISVVDQIFT-RVGAADSQYRGISTFMM  101 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~--~g~~v~~~~~~~~~~~~~l~-~~~l~~~~~~~~~~lS~  101 (185)
                      .|+.+.-.+.+|+++.|.|++|+|||||+..+..-....+  -..|+.-+...-.....++. ..++... .-.-+.++.
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~-~l~~g~l~~  267 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMN-RVRLGQLTD  267 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTT-TCCGGGCCH
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHH-HHhCCCCCH
Confidence            3444444578999999999999999999988854332211  11133332211112333321 2233211 111246888


Q ss_pred             HHHHHHHHHHh-CCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         102 EMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       102 g~~q~~~ia~~-l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      ++.+++.-+.. +...++++.|+|   .  .+...+...+ +.+.++.+..+|++.+.
T Consensus       268 ~~~~~~~~a~~~l~~~~l~i~d~~---~--~s~~~l~~~~-~~l~~~~~~~lIvID~l  319 (444)
T 2q6t_A          268 RDFSRLVDVASRLSEAPIYIDDTP---D--LTLMEVRARA-RRLVSQNQVGLIIIDYL  319 (444)
T ss_dssp             HHHHHHHHHHHHHHTSCEEEECCT---T--CBHHHHHHHH-HHHHHHSCCCEEEEECG
T ss_pred             HHHHHHHHHHHHHhcCCEEEECCC---C--CCHHHHHHHH-HHHHHHcCCCEEEEcCh
Confidence            88888775544 355678888877   2  2334444433 55554457888887663

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.05  E-value=2.3e-06  Score=65.28  Aligned_cols=42  Identities=12%  Similarity=0.173  Sum_probs=31.0

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCC
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA   74 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~   74 (185)
                      -=++++|.+++|+|++||||||+.+.|....  ..+. +++++..
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~--~~~~-~i~~D~~   56 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL--PNCS-VISQDDF   56 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS--TTEE-EEEGGGG
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHhc--CCcE-EEeCCcc
Confidence            3456789999999999999999999985421  1233 6666653

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.02  E-value=1.2e-06  Score=76.31  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=30.3

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .++++++++.+| +.+|+|+|||||||||.+|..+
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            567899999988 9999999999999999999543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.02  E-value=7.2e-07  Score=73.46  Aligned_cols=37  Identities=16%  Similarity=0.046  Sum_probs=29.5

Q ss_pred             eeeeceEEEeeCCce------eEEEEccCCCcHHHHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVS------FNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        23 ~~il~~isl~i~~g~------~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ...+.+++..+.+++      +++|+||||||||||+++|...
T Consensus        73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            346666777765555      9999999999999999999553

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.01  E-value=1.4e-06  Score=76.45  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ++.++++++ +|++++|+||||+|||||+|+|...
T Consensus        98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A           98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            677888887 7999999999999999999999654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.01  E-value=1.1e-05  Score=60.98  Aligned_cols=23  Identities=17%  Similarity=0.085  Sum_probs=20.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ..+.|.||+|+|||||++.+..-
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67899999999999999999653

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.00  E-value=7.8e-05  Score=62.32  Aligned_cols=136  Identities=15%  Similarity=0.205  Sum_probs=72.6

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETATV  109 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~i  109 (185)
                      +++|+++.|.||.|+|||||...+..-... .....|+..+... ...  ....++++.  ..-..+.+  ..  +.+.+
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~-~~~--~a~~~g~d~~~l~i~~~~~--~e--~~l~~  143 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL-DPV--YARALGVNTDELLVSQPDN--GE--QALEI  143 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CHH--HHHHTTCCGGGCEEECCSS--HH--HHHHH
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh-hHH--HHHHcCCCHHHceeecCCc--HH--HHHHH
Confidence            578999999999999999998887432222 1122355554322 111  244455431  11111222  22  23334


Q ss_pred             HHhC---CCCeEEEEeCCCCCCCc--CCh-----------hHHHHHH--HHHHHhcCCCeEEEecCh-hH----------
Q psy5297         110 IKKC---TENSLVIIDELGRGTST--FDG-----------FGMACSI--ARELASNRQPFTLFATHF-HE----------  160 (185)
Q Consensus       110 a~~l---~~p~llllDEP~~g~~~--~d~-----------~~~~~~i--l~~l~~~~~~~vii~tH~-~~----------  160 (185)
                      ++.+   ..++++++|....=...  .+.           ..+.+.+  +..+.++.+++||++.|. ..          
T Consensus       144 l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~  223 (366)
T 1xp8_A          144 MELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPET  223 (366)
T ss_dssp             HHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-------------
T ss_pred             HHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccc
Confidence            4433   57999999999654321  110           1122222  233345579999999885 32          


Q ss_pred             ------HHHhhccccceeeee
Q psy5297         161 ------IALLSRVIPTFRNVH  175 (185)
Q Consensus       161 ------~~~~~d~~~~l~~g~  175 (185)
                            +...||.++.++...
T Consensus       224 ~~gg~al~~~a~~rl~L~r~~  244 (366)
T 1xp8_A          224 TTGGRALKFYASVRLDVRKIG  244 (366)
T ss_dssp             --CHHHHHHHCSEEEEEEEES
T ss_pred             cCCcchhhheeeEEEEEEecc
Confidence                  244566666666544

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.99  E-value=4.5e-06  Score=67.95  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=22.2

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      .+..+.|.||+|+|||||++.++.-.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35679999999999999999997543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.98  E-value=3.6e-06  Score=65.79  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=24.1

Q ss_pred             eeceEEEeeC---CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          25 IPNDVYFKSG---EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        25 il~~isl~i~---~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      -+.++++.+.   +|.+++|.||+||||||+++.|..
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4677777776   899999999999999999999965

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.94  E-value=1.6e-05  Score=64.88  Aligned_cols=142  Identities=13%  Similarity=0.095  Sum_probs=74.1

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-----------------hhCceecCCCC-CcchhhHHHhhcCcccc--
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-----------------QIGCFVPCDSA-TISVVDQIFTRVGAADS--   91 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-----------------~~g~~v~~~~~-~~~~~~~~l~~~~l~~~--   91 (185)
                      .+++|+++.|.||+|+|||||...+..-....                 ....|+..+.. ....+.++++.++.+..  
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~  173 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV  173 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence            36789999999999999999998885321111                 11124444332 12334445555555321  


Q ss_pred             ccc-C-cCccHHHH-HHHHH-HHHhC---CCCeEEEEeCCCCCCCc-C-------Chh-HHHHHH--HHHHHhcCCCeEE
Q psy5297          92 QYR-G-ISTFMMEM-KETAT-VIKKC---TENSLVIIDELGRGTST-F-------DGF-GMACSI--ARELASNRQPFTL  153 (185)
Q Consensus        92 ~~~-~-~~~lS~g~-~q~~~-ia~~l---~~p~llllDEP~~g~~~-~-------d~~-~~~~~i--l~~l~~~~~~~vi  153 (185)
                      .++ . ....+..+ .+.+. +...+   .+++++++|....-... .       +.. .+.+.+  +..+.++.+++||
T Consensus       174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi  253 (322)
T 2i1q_A          174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL  253 (322)
T ss_dssp             HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence            000 0 11122222 22232 22222   46899999998432111 0       111 122222  3444455799999


Q ss_pred             EecCh-hH----------------HHHhhccccceee
Q psy5297         154 FATHF-HE----------------IALLSRVIPTFRN  173 (185)
Q Consensus       154 i~tH~-~~----------------~~~~~d~~~~l~~  173 (185)
                      ++.|- ..                +...+|.++.++.
T Consensus       254 ~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~  290 (322)
T 2i1q_A          254 VTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK  290 (322)
T ss_dssp             EEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred             EECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence            99883 22                4445676777653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.92  E-value=5.4e-06  Score=62.22  Aligned_cols=31  Identities=19%  Similarity=0.130  Sum_probs=25.2

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++|++..++..++|+|+.||||||+.+.+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999999999998865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.91  E-value=5.8e-06  Score=61.52  Aligned_cols=26  Identities=19%  Similarity=0.049  Sum_probs=22.9

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+|++++|+|++||||||+.+.+...
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999653

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.88  E-value=4.3e-06  Score=73.55  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|++++|+|+||||||||+|+|..
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHH
Confidence            567999999999999999999999954

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.88  E-value=2.6e-06  Score=70.45  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.+++++++...++.+++++|+||+|||||++.|..
T Consensus        43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            347889999999999999999999999999999954

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.87  E-value=7.2e-06  Score=63.05  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.+++|+||+||||||+.+.|
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L   25 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAM   25 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            568999999999999999999

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.87  E-value=0.00016  Score=59.42  Aligned_cols=119  Identities=14%  Similarity=0.145  Sum_probs=63.1

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHH-HHHHHH--HhhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSI-GVSVFL--AQIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETA  107 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~--~~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~  107 (185)
                      +++| ++.|.||.|+|||||+-.+ ....-.  .....|+..+....+   ...+++|++.  ..-..+.  +.++ +.+
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~~~--~~E~-~~l   98 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTPVQ--SLEQ-LRI   98 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEECS--BHHH-HHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEcCC--CHHH-HHH
Confidence            5789 8999999999999996555 322211  111236655443222   2356667642  1111222  3333 223


Q ss_pred             HHHHh---C--CCCeEEEEeCCCCCCCc--CCh-------------hHHHHHH--HHHHHhcCCCeEEEecCh
Q psy5297         108 TVIKK---C--TENSLVIIDELGRGTST--FDG-------------FGMACSI--ARELASNRQPFTLFATHF  158 (185)
Q Consensus       108 ~ia~~---l--~~p~llllDEP~~g~~~--~d~-------------~~~~~~i--l~~l~~~~~~~vii~tH~  158 (185)
                      .++..   +  .+|+++++|-..+=...  .+.             ..+.+.+  +..+.++.++++|++-|-
T Consensus        99 ~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV  171 (333)
T 3io5_A           99 DMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT  171 (333)
T ss_dssp             HHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence            33322   3  57999999988543210  110             0111212  222344479999999986

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.83  E-value=8.5e-06  Score=61.25  Aligned_cols=19  Identities=21%  Similarity=0.237  Sum_probs=18.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+||||||||++.+
T Consensus        31 kv~lvG~~g~GKSTLl~~l   49 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRF   49 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5899999999999999998

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.83  E-value=1.8e-05  Score=71.01  Aligned_cols=28  Identities=14%  Similarity=0.077  Sum_probs=23.4

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      ++++++++.++|+|+||+|||||++.+-
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~   30 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALL   30 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHH
Confidence            4567889999999999999999999983

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.82  E-value=8.7e-06  Score=61.68  Aligned_cols=21  Identities=29%  Similarity=0.036  Sum_probs=19.2

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|+|+|||||||+.+.|..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999954

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.80  E-value=6.6e-05  Score=61.79  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=24.1

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+.+|.++.|.||.|+|||||...++.-
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4567888999999999999999998653

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.80  E-value=1.7e-05  Score=66.22  Aligned_cols=32  Identities=19%  Similarity=0.217  Sum_probs=26.4

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+..+++.+ .+++|+|||||||||+|.+|.-.
T Consensus        17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~~   48 (371)
T 3auy_A           17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFFA   48 (371)
T ss_dssp             EEEEEECCS-EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEecCC-CeEEEECCCCCCHHHHHHHHHHH
Confidence            456666665 79999999999999999999653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.80  E-value=0.00022  Score=69.73  Aligned_cols=137  Identities=12%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHHHh-hCceecCCCCCcchhhHHHhhcCcc--cccccCcCccHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA--DSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~i  109 (185)
                      +++|+++.|.||+|+|||||+..+..-..... ...|+..+... ...  ..+.++++  ...-....++  .  +....
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql--~A~~lGvd~~~L~i~~~~~l--e--ei~~~  801 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPI--YARKLGVDIDNLLCSQPDTG--E--QALEI  801 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHH--HHHHTTCCGGGCEEECCSSH--H--HHHHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHH--HHHHcCCChhheEEecCCcH--H--HHHHH
Confidence            68999999999999999999998854322211 11244333321 111  13444432  1111112222  1  23333


Q ss_pred             HHhC---CCCeEEEEeCCCCCCC-------cCC------hhHHHHHH--HHHHHhcCCCeEEEecCh-hH----------
Q psy5297         110 IKKC---TENSLVIIDELGRGTS-------TFD------GFGMACSI--ARELASNRQPFTLFATHF-HE----------  160 (185)
Q Consensus       110 a~~l---~~p~llllDEP~~g~~-------~~d------~~~~~~~i--l~~l~~~~~~~vii~tH~-~~----------  160 (185)
                      ++.+   ..|+++++|+...-..       +-+      ...+.+.+  +..+.++.+++||+++|. ..          
T Consensus       802 l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~  881 (1706)
T 3cmw_A          802 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET  881 (1706)
T ss_dssp             HHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEE
T ss_pred             HHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccc
Confidence            3322   6899999999955331       001      11122222  222344479999999993 22          


Q ss_pred             ------HHHhhccccceeeeeE
Q psy5297         161 ------IALLSRVIPTFRNVHE  176 (185)
Q Consensus       161 ------~~~~~d~~~~l~~g~i  176 (185)
                            +...+|.++.+++...
T Consensus       882 p~gs~~Leq~ADvvl~L~R~~~  903 (1706)
T 3cmw_A          882 TTGGNALKFYASVRLDIRRIGA  903 (1706)
T ss_dssp             ESSCSHHHHHEEEEEEEEEEEE
T ss_pred             cCCcchhhheeeEEEEEEeccc
Confidence                  4567788888865543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.80  E-value=5.2e-05  Score=62.22  Aligned_cols=26  Identities=23%  Similarity=0.138  Sum_probs=22.5

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ..+..+.|.||.|+||||+++.+..-
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.79  E-value=1e-05  Score=61.60  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.1

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+|.+++|+||+||||||+.+.|..
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999999854

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.78  E-value=1.5e-05  Score=60.22  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=18.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +|.++.++||.|+||||++.-+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~   23 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSF   23 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHH
Confidence            4789999999999999997433

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.77  E-value=1.2e-05  Score=60.56  Aligned_cols=34  Identities=15%  Similarity=0.113  Sum_probs=24.3

Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAREL  144 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l  144 (185)
                      .|+++ .+|.+.++|  ++++++.....+.+.+.+.+
T Consensus       132 ~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          132 EARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            35556 678888998  88888887777766554443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.77  E-value=5.6e-05  Score=60.63  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      ..+.|.||+|+||||+.+.|....
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            579999999999999999997644

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.75  E-value=1.3e-05  Score=62.77  Aligned_cols=120  Identities=11%  Similarity=0.015  Sum_probs=55.1

Q ss_pred             CCcee-EEEEccCCCcHHHHHHHHHHHHHHHhhC-ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297          34 GEVSF-NLVTGPNMGGKSTYIRSIGVSVFLAQIG-CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        34 ~~g~~-~~l~G~NGsGKSTLlk~iG~i~~~~~~g-~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                      .+|+. +.+.|+-|+||||++-.++.-....... .++..++..-.-...++.  ++... ....-.+.+.......+..
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~--gl~~~-~~~~~~~~~~~~~e~~l~~   79 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLN--GLPQQ-PLLRTEYRGMTLEEMDLDA   79 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHT--TSCBC-CCEEEEETTEEEEECCHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhc--Ccccc-CcceeecCCcccccccHHH
Confidence            35664 7789999999999987776544322111 122222211111111221  22110 0000011100000000111


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhH-HHHHHHHHHHhcCCCeEEEecCh
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFG-MACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~-~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      ++ ..|+++|+|||..--.+..... ..+.+ ..+.. .+..++.++|-
T Consensus        80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV-~~~l~-sgidVitT~Nl  126 (228)
T 2r8r_A           80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDI-QELLA-AGIDVYTTVNV  126 (228)
T ss_dssp             HHHHCCSEEEESCTTCBCCTTCSSSBHHHHH-HHHHH-TTCEEEEEEEG
T ss_pred             HHhcCCCEEEEeCCCCCCcccchhHHHHHHH-HHHHc-CCCCEEEEccc
Confidence            12 4799999999965322222222 33333 33444 58889999884

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.74  E-value=6.1e-05  Score=64.49  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=26.3

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      |+.+.-.+.+|+++.|.|+.|+|||||.-.+..
T Consensus       187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            333333578999999999999999999887743

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.73  E-value=0.0003  Score=51.48  Aligned_cols=26  Identities=12%  Similarity=0.158  Sum_probs=21.7

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ..+..+.|.||.|+||||+++.+..-
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999999653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.68  E-value=2.2e-05  Score=58.36  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=21.4

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+|.+++|+|++||||||+.+.|.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999999994

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.67  E-value=2.4e-05  Score=58.44  Aligned_cols=29  Identities=17%  Similarity=-0.004  Sum_probs=24.9

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      +...+|.+++|+|++||||||+.+.|...
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34467899999999999999999999653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.65  E-value=0.00032  Score=68.64  Aligned_cols=136  Identities=12%  Similarity=0.116  Sum_probs=74.4

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH-HHHHHhhCceecCCCCCcchhhHHHhhcCcc--cccccCcCccHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV-SVFLAQIGCFVPCDSATISVVDQIFTRVGAA--DSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~-i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~i  109 (185)
                      +++|+++.|.||.|+|||||.-.+.. .........|+..+...-..   ..+.++++  ...-..+.  +.++  .+.+
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~i~~~~--~~e~--~l~~  452 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPD--TGEQ--ALEI  452 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCS--SHHH--HHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH---HHHHcCCCHHHeEEcCCC--CHHH--HHHH
Confidence            67999999999999999999877732 22211122355544422221   24445543  11111222  2222  2233


Q ss_pred             HHhC---CCCeEEEEeCCCCCCCc-------CC----hh--HHHHHH--HHHHHhcCCCeEEEecCh-h-----------
Q psy5297         110 IKKC---TENSLVIIDELGRGTST-------FD----GF--GMACSI--ARELASNRQPFTLFATHF-H-----------  159 (185)
Q Consensus       110 a~~l---~~p~llllDEP~~g~~~-------~d----~~--~~~~~i--l~~l~~~~~~~vii~tH~-~-----------  159 (185)
                      ++.+   .+|+++++|....=...       -+    ..  .+.+.+  +..+.++.+++||+++|. .           
T Consensus       453 l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~  532 (1706)
T 3cmw_A          453 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET  532 (1706)
T ss_dssp             HHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEE
T ss_pred             HHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCcc
Confidence            3322   68999999999543320       01    01  112222  222234479999999994 2           


Q ss_pred             -----HHHHhhccccceeeee
Q psy5297         160 -----EIALLSRVIPTFRNVH  175 (185)
Q Consensus       160 -----~~~~~~d~~~~l~~g~  175 (185)
                           .+..+||-++.+....
T Consensus       533 p~gg~ale~~ADv~L~L~R~~  553 (1706)
T 3cmw_A          533 TTGGNALKFYASVRLDIRRIG  553 (1706)
T ss_dssp             ESSCSHHHHHEEEEEEEEEEE
T ss_pred             CCCCcceeeeCCEEEEEEecc
Confidence                 2456788877776544

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.65  E-value=0.00027  Score=53.72  Aligned_cols=123  Identities=15%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecC--CCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC--DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                      .+|.++.++||-||||||.+--+..-...+..-.++.+  ...... ...+..+.|+... .....+..       .+..
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~~~~-a~~~~~~~-------~i~~   76 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQ-AVAIKNSR-------EILK   76 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEE-CEEESSST-------HHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCCcee-eEeeCCHH-------HHHH
Confidence            56899999999999999876544221111111113332  111111 1223444444311 11112221       2333


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-----------hHHHHhhcccccee
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-----------HEIALLSRVIPTFR  172 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-----------~~~~~~~d~~~~l~  172 (185)
                      .+ .+.+++++||-   -. ++... .+. ++.+.. .+..||++.++           .++..+||.+.-|+
T Consensus        77 ~~~~~~dvViIDEa---qf-l~~~~-v~~-l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           77 YFEEDTEVIAIDEV---QF-FDDEI-VEI-VNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             HCCTTCSEEEECSG---GG-SCTHH-HHH-HHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             HHhccCCEEEEECC---CC-CCHHH-HHH-HHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            44 45799999996   22 44333 333 466666 48999998872           46778888886543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.61  E-value=3.3e-05  Score=59.06  Aligned_cols=29  Identities=21%  Similarity=0.177  Sum_probs=25.3

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      +.+++|.+++|+|++||||||+.+.|...
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            44678999999999999999999999653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.61  E-value=2.5e-05  Score=59.11  Aligned_cols=23  Identities=26%  Similarity=0.179  Sum_probs=20.5

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+++|+|++||||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999954

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.60  E-value=3.5e-05  Score=56.86  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|..++|+|++|+|||||++.+
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l   24 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNAL   24 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHH
Confidence            35788999999999999999998

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.59  E-value=3.4e-05  Score=63.92  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++.+++|+|++|||||||++.+..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3478999999999999999999943

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.59  E-value=0.00031  Score=51.36  Aligned_cols=25  Identities=12%  Similarity=0.244  Sum_probs=21.2

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ....+.|.||.|+||||+++.+..-
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3566799999999999999999654

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.59  E-value=0.0004  Score=53.84  Aligned_cols=123  Identities=17%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC--CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS--ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                      .+|.+..++||=||||||.+--+..-...+..-.++++..  ..+. ...+..+.|+.-.. ..+....       .+..
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s~~g~~~~a-~~~~~~~-------~~~~   96 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVSHNGLKVKA-VPVSASK-------DIFK   96 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCE-EECSSGG-------GGGG
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHhhcCCeeEE-eecCCHH-------HHHH
Confidence            6799999999999999998654432221111111444321  1111 12344555543111 1112221       2222


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC---------h--hHHHHhhcccccee
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH---------F--HEIALLSRVIPTFR  172 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH---------~--~~~~~~~d~~~~l~  172 (185)
                      .+ .+.+++++||-   -- ++...+ +. ++.++. .+..||++-+         .  ..+..+||.+.-|+
T Consensus        97 ~~~~~~dvViIDEa---QF-~~~~~V-~~-l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A           97 HITEEMDVIAIDEV---QF-FDGDIV-EV-VQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             GCCSSCCEEEECCG---GG-SCTTHH-HH-HHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             HHhcCCCEEEEECc---cc-CCHHHH-HH-HHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence            33 35899999998   32 443433 43 466666 5899999988         3  56778888887554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.58  E-value=0.00069  Score=57.96  Aligned_cols=94  Identities=16%  Similarity=0.087  Sum_probs=49.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhH---HHhhcCcccccccCcCccHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQ---IFTRVGAADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~---~l~~~~l~~~~~~~~~~lS~g~~q~~~  108 (185)
                      ++.+++++|++|+||||+...|+...-  +.|   .++..+......++.   +.+..++.-.......+ .. ..-+-+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~--~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~d-p~-~i~~~a  174 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ--KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKD-AI-KLAKEG  174 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCC-HH-HHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCC-HH-HHHHHH
Confidence            468999999999999999998875332  223   244444433332222   22333332111111111 11 111122


Q ss_pred             HHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297         109 VIKKC-TENSLVIIDELGRGTSTFDGF  134 (185)
Q Consensus       109 ia~~l-~~p~llllDEP~~g~~~~d~~  134 (185)
                      +..+- .+++++|+|.|.  ..+.+..
T Consensus       175 l~~a~~~~~DvVIIDTaG--rl~~d~~  199 (443)
T 3dm5_A          175 VDYFKSKGVDIIIVDTAG--RHKEDKA  199 (443)
T ss_dssp             HHHHHHTTCSEEEEECCC--CSSCCHH
T ss_pred             HHHHHhCCCCEEEEECCC--cccchHH
Confidence            33444 579999999884  4444433

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.58  E-value=0.00098  Score=50.33  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=19.3

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.|.||.|+|||||++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.55  E-value=0.00011  Score=58.24  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.6

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+.-+.|.||.|+|||||.+.++.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            4566799999999999999999954

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.55  E-value=4.5e-05  Score=62.14  Aligned_cols=35  Identities=17%  Similarity=0.113  Sum_probs=25.7

Q ss_pred             eeceEEEeeCCc--eeEEEEccCCCcHHHHHHHHHHH
Q psy5297          25 IPNDVYFKSGEV--SFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        25 il~~isl~i~~g--~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      +++.+.-.+..|  ..+.|.||+|+||||+++.+...
T Consensus        45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            444444445555  44999999999999999999654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.54  E-value=0.00027  Score=56.96  Aligned_cols=22  Identities=18%  Similarity=-0.094  Sum_probs=19.4

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+.|.||.|+|||+|.+.|+.
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5677889999999999999965

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.53  E-value=4.6e-05  Score=59.30  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=22.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+|.+++|+|++||||||+.+.|.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~   37 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIA   37 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHH
Confidence            578899999999999999999993

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.53  E-value=0.00077  Score=66.85  Aligned_cols=136  Identities=13%  Similarity=0.174  Sum_probs=75.7

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCcc--cccccCcCccHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAA--DSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~i  109 (185)
                      +++|+++.|.||.|+|||||...+..-.... ....|+..+... ...  ..+.++.+  ...-..+.  +..  +.+.+
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~-~~~--~a~~lGvd~~~L~I~~~~--~~e--~il~~  452 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPI--YARKLGVDIDNLLCSQPD--TGE--QALEI  452 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC-CHH--HHHHTTCCTTTCEEECCS--SHH--HHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH-HHH--HHHHcCCCHHHeEEeCCC--CHH--HHHHH
Confidence            6799999999999999999988773322111 111244443322 211  23445543  11111122  222  23444


Q ss_pred             HHhC---CCCeEEEEeCCCCCCC-------cCC------hhHHHHHHHHHH---HhcCCCeEEEecCh-hH---------
Q psy5297         110 IKKC---TENSLVIIDELGRGTS-------TFD------GFGMACSIAREL---ASNRQPFTLFATHF-HE---------  160 (185)
Q Consensus       110 a~~l---~~p~llllDEP~~g~~-------~~d------~~~~~~~il~~l---~~~~~~~vii~tH~-~~---------  160 (185)
                      ++.+   ..|+++++|....-..       +-|      ...+.+. +..+   .++.+++||+++|- ..         
T Consensus       453 ~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~-Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~  531 (2050)
T 3cmu_A          453 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA-MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE  531 (2050)
T ss_dssp             HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHH-HHHHHHHHHTTTCEEEEEECCEECTTCCSSCCE
T ss_pred             HHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHH-HHHHHHHHHHcCCeEEEEeecccccccccCCCc
Confidence            4432   6899999999854332       001      0112222 2333   45579999999984 22         


Q ss_pred             -------HHHhhccccceeeeeE
Q psy5297         161 -------IALLSRVIPTFRNVHE  176 (185)
Q Consensus       161 -------~~~~~d~~~~l~~g~i  176 (185)
                             +...+|.++.++....
T Consensus       532 ~psGg~ale~~ADv~l~L~R~~~  554 (2050)
T 3cmu_A          532 TTTGGNALKFYASVRLDIRRIGA  554 (2050)
T ss_dssp             ECSSHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCcchhhhhCCEEEEEEeccc
Confidence                   5667888888876543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.53  E-value=8.3e-06  Score=66.94  Aligned_cols=38  Identities=21%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             ceeeeceEEEeeCCcee--EEEEccCCCcHHHHHHHHHHH
Q psy5297          22 VSYIPNDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        22 ~~~il~~isl~i~~g~~--~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ...+++.++..++.|++  +.+.||+|+||||+++++...
T Consensus        30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34578888888999998  999999999999999999653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.52  E-value=4.6e-05  Score=57.03  Aligned_cols=32  Identities=16%  Similarity=0.120  Sum_probs=18.2

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+++++++..++. .++++|++|+|||||++.+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l   43 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHML   43 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHH
Confidence            3778999987765 5789999999999999987

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.52  E-value=1.3e-05  Score=66.71  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=30.5

Q ss_pred             eeeceEEEeeCCcee--EEEEccCCCcHHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        24 ~il~~isl~i~~g~~--~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+++.+++.+++|++  ++|+|++||||||+.++|.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence            467888888899988  9999999999999999994

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.51  E-value=2.3e-05  Score=68.09  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++.++++.+++|  ++|+||||+|||||+|+|+.
T Consensus        54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred             hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHH
Confidence            3677888999988  99999999999999999954

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.50  E-value=0.00022  Score=58.05  Aligned_cols=26  Identities=15%  Similarity=-0.003  Sum_probs=22.5

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSVF   61 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~~   61 (185)
                      +.-+.|.||.|+|||+|+++|+.-..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999976443

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.50  E-value=5.5e-05  Score=58.81  Aligned_cols=19  Identities=32%  Similarity=0.244  Sum_probs=17.9

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|++|+|||||++.|
T Consensus        31 ~i~lvG~~g~GKStlin~l   49 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSI   49 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999988

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.49  E-value=0.0014  Score=52.29  Aligned_cols=26  Identities=19%  Similarity=0.066  Sum_probs=22.0

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      .+.-+.|.||.|+||||+.+.++...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999997643

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.48  E-value=0.00048  Score=59.51  Aligned_cols=26  Identities=19%  Similarity=0.073  Sum_probs=23.6

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+.+|+++.|.|+.|+|||||+-.+.
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a  263 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQA  263 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHH
Confidence            47899999999999999999987774

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.45  E-value=6.6e-05  Score=54.74  Aligned_cols=20  Identities=25%  Similarity=0.164  Sum_probs=18.4

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|++|+|||||++.+
T Consensus         4 ~~v~lvG~~gvGKStL~~~l   23 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNAL   23 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999998

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.45  E-value=2.3e-05  Score=59.18  Aligned_cols=32  Identities=13%  Similarity=0.101  Sum_probs=28.0

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+++++++..++.+ ++++|++|+|||||++.+
T Consensus        14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l   45 (198)
T 1f6b_A           14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHML   45 (198)
T ss_dssp             HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHH
T ss_pred             HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHH
Confidence            47788888887765 689999999999999998

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.43  E-value=6.8e-05  Score=58.83  Aligned_cols=31  Identities=23%  Similarity=0.153  Sum_probs=22.1

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.++++..++|  +.|.||+|+||||+++.|+.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHH
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHH
Confidence            45566666655  88999999999999999965

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.42  E-value=7.5e-05  Score=54.49  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|+|+.||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999854

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.41  E-value=9.6e-05  Score=55.03  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=22.1

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++.++.|.|+.||||||+.+.+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999853

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.41  E-value=7e-05  Score=62.00  Aligned_cols=31  Identities=26%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ..++++++++++   .++|+|++|||||||++.|
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l   54 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESI   54 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHH
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHH
Confidence            358899999987   7999999999999999999

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.39  E-value=6.6e-05  Score=59.18  Aligned_cols=27  Identities=26%  Similarity=0.153  Sum_probs=24.0

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+++.++.|+|++||||||+.+.|..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            567789999999999999999999854

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.37  E-value=5e-05  Score=64.08  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=29.9

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      |+.+.+.+|+.++|+||+|+|||||++.|...
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            89999999999999999999999999998543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.37  E-value=0.00011  Score=56.28  Aligned_cols=24  Identities=25%  Similarity=0.098  Sum_probs=21.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++-+++|+|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999954

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.37  E-value=9.6e-05  Score=53.68  Aligned_cols=19  Identities=32%  Similarity=0.469  Sum_probs=18.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|.||.||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999988

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.36  E-value=9.7e-05  Score=54.43  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.++.|+|+.||||||+.+.|..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999854

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.34  E-value=0.0001  Score=55.22  Aligned_cols=22  Identities=14%  Similarity=0.102  Sum_probs=19.7

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|+|++|||||||++.|-.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            5799999999999999999843

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.33  E-value=0.00011  Score=54.53  Aligned_cols=23  Identities=22%  Similarity=-0.000  Sum_probs=20.9

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      |.+++|.|+.||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999999855

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.33  E-value=0.00011  Score=54.26  Aligned_cols=20  Identities=25%  Similarity=0.164  Sum_probs=18.4

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|++|+|||||++.+
T Consensus         8 ~~i~lvG~~gvGKStL~~~l   27 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNAL   27 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999998

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.33  E-value=6.2e-05  Score=61.14  Aligned_cols=32  Identities=16%  Similarity=0.043  Sum_probs=27.6

Q ss_pred             ce-EEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          27 ND-VYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        27 ~~-isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+ ++++.+ +++++++|+||+||||++..++..
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~  121 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF  121 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence            45 778876 999999999999999999999543

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.32  E-value=0.0014  Score=50.08  Aligned_cols=57  Identities=16%  Similarity=0.162  Sum_probs=39.2

Q ss_pred             CCCeEEEEeCCCC--CCCcCChhHHHHHHHHHHHhc-CCCeEEEecCh--hHHHHhhccccceeee
Q psy5297         114 TENSLVIIDELGR--GTSTFDGFGMACSIARELASN-RQPFTLFATHF--HEIALLSRVIPTFRNV  174 (185)
Q Consensus       114 ~~p~llllDEP~~--g~~~~d~~~~~~~il~~l~~~-~~~~vii~tH~--~~~~~~~d~~~~l~~g  174 (185)
                      .+.++|||||.+-  ....++...+.    +.+.++ .+..+|+++.+  .++.+.||.+.-|+.-
T Consensus       119 ~~yDlvILDEi~~al~~g~l~~~ev~----~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v  180 (196)
T 1g5t_A          119 PLLDMVVLDELTYMVAYDYLPLEEVI----SALNARPGHQTVIITGRGCHRDILDLADTVSELRPV  180 (196)
T ss_dssp             TTCSEEEEETHHHHHHTTSSCHHHHH----HHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred             CCCCEEEEeCCCccccCCCCCHHHHH----HHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence            5689999999943  23345544433    444432 36789999996  7788999998877653

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.31  E-value=0.00069  Score=56.00  Aligned_cols=24  Identities=25%  Similarity=0.185  Sum_probs=20.9

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ...-+.|.||.|+||||+.+.+..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999964

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.31  E-value=0.00012  Score=57.75  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|+||+|||||||.+.|..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999999854

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.31  E-value=0.00053  Score=52.82  Aligned_cols=25  Identities=28%  Similarity=0.220  Sum_probs=22.4

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +++|+++.|.|+.|+|||||.-.+.
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            6789999999999999999987663

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.29  E-value=0.00011  Score=54.48  Aligned_cols=25  Identities=24%  Similarity=0.159  Sum_probs=22.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++.+++|+|+.||||||+.+.+..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4578899999999999999999853

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.27  E-value=0.00012  Score=62.47  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=26.5

Q ss_pred             ceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|+  ++++++++|+||+||||++..|+.
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567787  789999999999999999999943

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.26  E-value=0.00015  Score=58.43  Aligned_cols=26  Identities=19%  Similarity=0.105  Sum_probs=22.5

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ...+.++.|.||+||||||+.+.+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999998843

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.25  E-value=0.00013  Score=53.76  Aligned_cols=20  Identities=30%  Similarity=0.263  Sum_probs=18.5

Q ss_pred             eEEEEccCCCcHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++|+|++||||||+.+.|.
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            58999999999999999994

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.24  E-value=0.00014  Score=53.85  Aligned_cols=19  Identities=21%  Similarity=0.419  Sum_probs=17.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|++|+|||||++.+
T Consensus         4 kv~ivG~~gvGKStLl~~l   22 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQL   22 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0019  Score=55.04  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +-.=+.|.||.|+|||+|.|+++.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            334589999999999999999964

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.22  E-value=0.00019  Score=52.72  Aligned_cols=22  Identities=32%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999865

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.21  E-value=0.00018  Score=53.93  Aligned_cols=21  Identities=29%  Similarity=0.151  Sum_probs=19.1

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|.|+.||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999854

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.20  E-value=0.0002  Score=53.76  Aligned_cols=25  Identities=20%  Similarity=0.187  Sum_probs=22.2

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+|.+++|+|+.||||||+.+.|..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999999999854

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.20  E-value=0.00017  Score=54.64  Aligned_cols=19  Identities=32%  Similarity=0.583  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      -++|+||+|||||||++.|
T Consensus         3 pIVi~GPSG~GK~Tl~~~L   21 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKL   21 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=97.19  E-value=0.001  Score=51.61  Aligned_cols=122  Identities=18%  Similarity=0.200  Sum_probs=62.1

Q ss_pred             CCceeEEEEccCCCcHHH-HHHHHHHHHHHHhhCceecC--CCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKST-YIRSIGVSVFLAQIGCFVPC--DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKST-Llk~iG~i~~~~~~g~~v~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      ..|.+..++||-|||||| |++.+-......+.. ++++  ...... ...+..+.|+.-.. ..+....       .|.
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kv-li~kp~~D~R~~-~~~I~Sr~G~~~~a-~~v~~~~-------di~   95 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKV-VVFKPAIDDRYH-KEKVVSHNGNAIEA-INISKAS-------EIM   95 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE-EEEEEC------------CBTTBCCEE-EEESSGG-------GGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCce-EEEEeccCCcch-hhhHHHhcCCceee-EEeCCHH-------HHH
Confidence            569999999999999999 777763322222112 3332  221111 22355555543211 1111110       011


Q ss_pred             HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-----------hHHHHhhcccccee
Q psy5297         111 KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-----------HEIALLSRVIPTFR  172 (185)
Q Consensus       111 ~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-----------~~~~~~~d~~~~l~  172 (185)
                      ..+ .+.++++.||-    -.++. .+.+. +..+.. .|..|++.-=+           ..+..+||++.-++
T Consensus        96 ~~i~~~~dvV~IDEa----QFf~~-~~v~~-l~~la~-~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~  162 (219)
T 3e2i_A           96 THDLTNVDVIGIDEV----QFFDD-EIVSI-VEKLSA-DGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQ  162 (219)
T ss_dssp             GSCCTTCSEEEECCG----GGSCT-HHHHH-HHHHHH-TTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred             HHHhcCCCEEEEech----hcCCH-HHHHH-HHHHHH-CCCEEEEeecccccccCCCccHHHHHHhcceEEEee
Confidence            123 67899999997    22332 23443 366665 69988875322           14667788776543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.19  E-value=0.00018  Score=56.41  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             ceeEEEEccCCCcHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .-+++|.||+||||||+.+.|.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999993

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.17  E-value=0.0001  Score=55.83  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999954

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.17  E-value=0.00024  Score=53.24  Aligned_cols=23  Identities=26%  Similarity=0.094  Sum_probs=20.4

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+++|+|+.||||||+.+.|..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999854

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.15  E-value=0.00025  Score=53.44  Aligned_cols=24  Identities=17%  Similarity=0.079  Sum_probs=21.6

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +|.+++|.|+.||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999965

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.15  E-value=0.00024  Score=52.70  Aligned_cols=22  Identities=27%  Similarity=0.138  Sum_probs=20.0

Q ss_pred             ceeEEEEccCCCcHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +.+++|+|+.||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999884

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.15  E-value=0.00025  Score=52.87  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=21.7

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++.+++|+|+.||||||+.+.|.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999999994

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.13  E-value=0.00026  Score=53.56  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++|.+++|+|+.||||||+.+.|..
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999999964

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=97.12  E-value=0.0024  Score=50.00  Aligned_cols=120  Identities=14%  Similarity=0.066  Sum_probs=61.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH-HHHHHHHhhCceecC--CCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQIGCFVPC--DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~~v~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      ..|.+..++||=||||||-+--. -.....++.. ++++  ....+.  ..+..+.|+.-... .+.....       +.
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kv-li~kp~~D~Ryg--~~i~sr~G~~~~a~-~i~~~~d-------i~   85 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKC-LVIKYAKDTRYS--SSFCTHDRNTMEAL-PACLLRD-------VA   85 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCE-EEEEETTCCCC-------------CEEE-EESSGGG-------GH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeE-EEEeecCCccch--HHHHhhcCCeeEEE-ecCCHHH-------HH
Confidence            46999999999999999864332 2211111112 3333  333333  45566666542111 1222211       11


Q ss_pred             HhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-----------hHHHHhhcccccee
Q psy5297         111 KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-----------HEIALLSRVIPTFR  172 (185)
Q Consensus       111 ~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-----------~~~~~~~d~~~~l~  172 (185)
                      ..+.+.+++++||-   --..+   +.+ +++.+.. .|..||++-++           ..+..+||.+.-|+
T Consensus        86 ~~~~~~dvViIDEa---QF~~~---v~e-l~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           86 QEALGVAVIGIDEG---QFFPD---IVE-FCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             HHHTTCSEEEESSG---GGCTT---HHH-HHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             HHhccCCEEEEEch---hhhhh---HHH-HHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            11267899999998   33322   434 3466665 69999999887           34666788776543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.11  E-value=0.0012  Score=51.44  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ....-+.|.||.|+||||+.+.++.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445588999999999999999965

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.11  E-value=0.0028  Score=63.01  Aligned_cols=120  Identities=11%  Similarity=0.087  Sum_probs=64.7

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETAT  108 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~  108 (185)
                      -+++|+++.|.|++|+|||||+..+..-.-.. ....|+..+...-...   ..+++++.  ..-.  +..+..+.  ..
T Consensus       728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~---A~rlG~~~~~l~i~--~~~~i~~i--~~  800 (2050)
T 3cmu_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCS--QPDTGEQA--LE  800 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEE--CCSSHHHH--HH
T ss_pred             CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHH---HHHcCCCccceEEe--cCCCHHHH--HH
Confidence            46789999999999999999998885422211 1122444433221121   34455431  1111  22232222  22


Q ss_pred             HHHhC---CCCeEEEEeCCCCCCC---------cCC----hhHHHHHH--HHHHHhcCCCeEEEecCh
Q psy5297         109 VIKKC---TENSLVIIDELGRGTS---------TFD----GFGMACSI--ARELASNRQPFTLFATHF  158 (185)
Q Consensus       109 ia~~l---~~p~llllDEP~~g~~---------~~d----~~~~~~~i--l~~l~~~~~~~vii~tH~  158 (185)
                      .++.+   ..|+++++|+...=..         ...    ...+.+.+  +..++++.+++||+++|-
T Consensus       801 ~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv  868 (2050)
T 3cmu_A          801 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI  868 (2050)
T ss_dssp             HHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence            22332   5799999999532111         001    01122221  466666689999999994

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.11  E-value=0.00027  Score=53.40  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=22.4

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+|.+++|+|+.||||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4578999999999999999999954

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.10  E-value=0.00012  Score=60.81  Aligned_cols=28  Identities=32%  Similarity=0.395  Sum_probs=24.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.+.++++|++      +|+|++|+|||||++.|
T Consensus        30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L   57 (361)
T 2qag_A           30 KSVKKGFEFTL------MVVGESGLGKSTLINSL   57 (361)
T ss_dssp             HHHHHCCEECE------EECCCTTSCHHHHHHHH
T ss_pred             eeecCCCCEEE------EEEcCCCCCHHHHHHHH
Confidence            45778888875      99999999999999997

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.08  E-value=0.00018  Score=53.16  Aligned_cols=24  Identities=17%  Similarity=0.212  Sum_probs=16.7

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++.+++|+|+.||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999853

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.06  E-value=0.00031  Score=52.05  Aligned_cols=23  Identities=13%  Similarity=0.096  Sum_probs=20.4

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +..++|+|+.||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999943

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.03  E-value=0.0019  Score=55.97  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.6

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ...+.|.||.|+||||+.+.++.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999965

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.0036  Score=53.44  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=20.9

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+-.=+.|.||.|+|||+|.|+|+.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3445688999999999999999954

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.02  E-value=0.0012  Score=53.80  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=21.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+..-+.|.||.|+|||+|.+.++.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHH
Confidence            3446789999999999999999965

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.01  E-value=0.00037  Score=51.61  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=19.3

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|.|+.||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999965

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.99  E-value=0.00038  Score=52.34  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=19.2

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|+|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999943

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.99  E-value=0.0016  Score=59.92  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVSVF   61 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i~~   61 (185)
                      ..+.|.||+|+|||++.+.|.....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4688999999999999999977554

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.98  E-value=0.00032  Score=56.57  Aligned_cols=27  Identities=22%  Similarity=0.161  Sum_probs=23.9

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.++..+.|.||+|+|||||.+.+..
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHH
Confidence            456788999999999999999999965

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.98  E-value=0.00045  Score=57.64  Aligned_cols=22  Identities=18%  Similarity=0.016  Sum_probs=20.3

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+..++|+||+||||||+++.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~   55 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKML   55 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHH
Confidence            5678999999999999999999

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.96  E-value=0.00037  Score=58.80  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+..+..++|+|+||+|||||++.|
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~L   42 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVL   42 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHH
Confidence            4467788999999999999999999

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.96  E-value=0.0011  Score=57.40  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=21.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ....-+.|.||.|+|||++.+.|+.
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~  260 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVAN  260 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHH
Confidence            3445689999999999999999954

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.95  E-value=0.00041  Score=57.84  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=18.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|+|++|||||||++.+
T Consensus       181 ~V~lvG~~naGKSTLln~L  199 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSL  199 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999999

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.93  E-value=0.00053  Score=50.71  Aligned_cols=22  Identities=27%  Similarity=0.199  Sum_probs=19.9

Q ss_pred             ceeEEEEccCCCcHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      ..+++|+|+.||||||+.+.+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999984

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.92  E-value=0.00049  Score=51.35  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.3

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|+|++|||||||++.|-.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999988843

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.89  E-value=0.0012  Score=53.57  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +..-+.|.||.|+|||+|.+.++.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            345689999999999999999965

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.87  E-value=0.0006  Score=53.84  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.6

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++.+++|.|+.||||||+.+.|..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999965

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.87  E-value=0.00056  Score=51.02  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +.+.+++|+|+.||||||+.+.|.
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~   33 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLV   33 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999994

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.87  E-value=0.00058  Score=52.21  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.7

Q ss_pred             CceeEEEEccCCCcHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      ++-+++|+|+.||||||+.+.|.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999999994

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.86  E-value=0.00051  Score=58.38  Aligned_cols=20  Identities=30%  Similarity=0.248  Sum_probs=18.7

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+||+|||||++.+
T Consensus       181 ~kvaivG~~gvGKSTLln~l  200 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAI  200 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            37999999999999999998

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.86  E-value=0.00054  Score=54.31  Aligned_cols=19  Identities=21%  Similarity=0.244  Sum_probs=18.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|++|+|||||++.+
T Consensus         5 ~i~lvG~~g~GKTTL~n~l   23 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNAL   23 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999998

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.85  E-value=0.00057  Score=52.56  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.2

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++.+++|.|+.||||||+.+.|.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999993

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.84  E-value=0.00072  Score=50.83  Aligned_cols=24  Identities=29%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+..+++|+|+.||||||+.+.|.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999883

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.84  E-value=0.00062  Score=50.44  Aligned_cols=21  Identities=19%  Similarity=0.194  Sum_probs=19.2

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|+|+.||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.83  E-value=0.003  Score=53.81  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+++++|++|+||||+...|+..
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            69999999999999999999653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.83  E-value=0.00058  Score=49.86  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=19.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|+|+.||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.83  E-value=0.00063  Score=51.67  Aligned_cols=20  Identities=25%  Similarity=0.132  Sum_probs=18.0

Q ss_pred             eEEEEccCCCcHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++|+||.||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999993

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.81  E-value=0.00063  Score=52.08  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             CceeEEEEccCCCcHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+.+++|+||.||||||+.+.|.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999999993

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.81  E-value=0.0022  Score=53.41  Aligned_cols=24  Identities=21%  Similarity=0.312  Sum_probs=20.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +..-+.|.||.|+|||+|.+.|+.
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999954

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.79  E-value=0.00074  Score=49.10  Aligned_cols=21  Identities=24%  Similarity=0.052  Sum_probs=18.9

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|+|+.||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.79  E-value=0.0008  Score=50.63  Aligned_cols=25  Identities=28%  Similarity=0.302  Sum_probs=21.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+-+++|+|+.||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999943

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.77  E-value=0.0029  Score=52.34  Aligned_cols=24  Identities=17%  Similarity=-0.068  Sum_probs=20.4

Q ss_pred             CceeEEE--EccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLV--TGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l--~G~NGsGKSTLlk~iG~   58 (185)
                      .+..+.|  .||.|+|||||++.+..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~   74 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVK   74 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHH
Confidence            4567777  89999999999999854

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.75  E-value=0.00073  Score=49.88  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=18.3

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++++|++|+|||||++.+
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l   36 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQL   36 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999988

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.75  E-value=0.0016  Score=53.75  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=20.5

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +..-+.|.||.|+|||||.+.+..
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHH
Confidence            345588999999999999999965

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.74  E-value=0.0008  Score=51.16  Aligned_cols=19  Identities=26%  Similarity=0.142  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+||.||||||+.+.|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L   20 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERI   20 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.74  E-value=0.00058  Score=49.93  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.-.++++|++|+|||||++.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l   38 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRL   38 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHH
Confidence            3456899999999999999887

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.72  E-value=0.00074  Score=49.96  Aligned_cols=21  Identities=29%  Similarity=0.284  Sum_probs=19.0

Q ss_pred             eeEEEEccCCCcHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+++|+|+.||||||+.+.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999984

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.00088  Score=49.54  Aligned_cols=20  Identities=20%  Similarity=0.509  Sum_probs=18.5

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++++|+.|+|||||++.+
T Consensus        49 ~~i~vvG~~g~GKSsll~~l   68 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLL   68 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999998

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.71  E-value=0.0015  Score=50.21  Aligned_cols=41  Identities=20%  Similarity=-0.008  Sum_probs=28.1

Q ss_pred             eeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          15 IVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        15 ~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ||+........+...-+.+. |..++|+||.|+|||||...+
T Consensus        14 ~l~~~~a~~~~lHa~~v~~~-g~~ilI~GpsGsGKStLA~~L   54 (205)
T 2qmh_A           14 YLDSQLAERRSMHGVLVDIY-GLGVLITGDSGVGKSETALEL   54 (205)
T ss_dssp             -------CCCCEESEEEEET-TEEEEEECCCTTTTHHHHHHH
T ss_pred             HHHHhcCcceeeeEEEEEEC-CEEEEEECCCCCCHHHHHHHH
Confidence            44433333446777777774 789999999999999998877

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.69  E-value=0.00091  Score=51.49  Aligned_cols=21  Identities=33%  Similarity=0.283  Sum_probs=18.8

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|.|+.||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999854

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.69  E-value=0.00095  Score=48.68  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=19.9

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      =++++|+|+-||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999854

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.68  E-value=0.00092  Score=47.90  Aligned_cols=19  Identities=32%  Similarity=0.347  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         7 ~i~v~G~~~~GKssl~~~l   25 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRY   25 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4789999999999999987

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.68  E-value=0.00045  Score=55.72  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=18.3

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.-+++|.||.||||||+.+.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999965

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.0051  Score=51.94  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=20.2

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +-.=+.|.||.|+|||+|.|+++.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHH
Confidence            334588999999999999999954

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.66  E-value=0.00097  Score=47.43  Aligned_cols=19  Identities=26%  Similarity=0.212  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKssl~~~l   23 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQL   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999988

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.64  E-value=0.0024  Score=48.67  Aligned_cols=117  Identities=12%  Similarity=0.061  Sum_probs=66.2

Q ss_pred             CceeEEEEccCCCcHH-HHHHHHHHHHHHHhhCcee-cCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKS-TYIRSIGVSVFLAQIGCFV-PCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKS-TLlk~iG~i~~~~~~g~~v-~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~ia  110 (185)
                      .|+++.+.||-||||| -||+.++......+...|+ |.-...+.  +.+..+.|..-  .......++-.         
T Consensus        19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~---------   87 (195)
T 1w4r_A           19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRDVAQ---------   87 (195)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHHHHSEEEEESSGGGGHH---------
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccCCcccceecCCHHHHHH---------
Confidence            5899999999999999 7888887765543333233 33222222  22333333211  11112222211         


Q ss_pred             HhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-h----------HHHHhhccccce
Q psy5297         111 KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-H----------EIALLSRVIPTF  171 (185)
Q Consensus       111 ~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~----------~~~~~~d~~~~l  171 (185)
                       ...+.++|++||-   =-.   ..+.+. ++.+.+ .|+.||++-.+ .          .+..+||++.-+
T Consensus        88 -~~~~~DvIlIDEa---QFf---k~~ve~-~~~L~~-~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl  150 (195)
T 1w4r_A           88 -EALGVAVIGIDEG---QFF---PDIVEF-CEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL  150 (195)
T ss_dssp             -HHHTCSEEEESSG---GGC---TTHHHH-HHHHHH-TTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred             -hccCCCEEEEEch---hhh---HHHHHH-HHHHHH-CCCeEEEEecccccccccchhHHHHHHhcCeEEEe
Confidence             0235799999998   322   224443 477775 79999998775 2          344566666543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.63  E-value=0.001  Score=52.09  Aligned_cols=23  Identities=26%  Similarity=0.151  Sum_probs=20.2

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      --+++|+|+.||||||+.+.|..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998854

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.63  E-value=0.0013  Score=49.90  Aligned_cols=24  Identities=29%  Similarity=0.069  Sum_probs=21.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..-+++|+|+.||||||+.+.+..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999854

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.63  E-value=0.0011  Score=47.31  Aligned_cols=19  Identities=21%  Similarity=0.284  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         3 ki~v~G~~~~GKSsli~~l   21 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRL   21 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999988

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.62  E-value=0.0012  Score=50.83  Aligned_cols=25  Identities=28%  Similarity=0.244  Sum_probs=22.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+|.++++.|+.||||||+.+.|..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999999954

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.62  E-value=0.013  Score=53.73  Aligned_cols=25  Identities=12%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      ..-++|+||+|+||||+++.+..-.
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999997643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.62  E-value=0.0011  Score=47.62  Aligned_cols=18  Identities=33%  Similarity=0.320  Sum_probs=17.2

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         5 i~~vG~~~~GKSsli~~l   22 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIF   22 (166)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999988

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.62  E-value=0.0011  Score=47.30  Aligned_cols=19  Identities=26%  Similarity=0.181  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l   23 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999887

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.60  E-value=0.00094  Score=52.09  Aligned_cols=25  Identities=20%  Similarity=0.169  Sum_probs=19.9

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+|.++++.|+.||||||+.+.|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999999954

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.59  E-value=0.0014  Score=51.27  Aligned_cols=24  Identities=17%  Similarity=0.077  Sum_probs=21.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++-+++|+||.||||||+.+.|.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999994

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.59  E-value=0.0011  Score=53.04  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             ceeEEEEccCCCcHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      ..+++|+|+.||||||+.+.|.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999985

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.59  E-value=0.0011  Score=47.21  Aligned_cols=19  Identities=21%  Similarity=0.186  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         6 ~i~v~G~~~~GKssl~~~l   24 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQF   24 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.59  E-value=0.0011  Score=47.49  Aligned_cols=19  Identities=21%  Similarity=0.135  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         8 ~i~v~G~~~~GKSsli~~l   26 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRF   26 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            3789999999999999987

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.59  E-value=0.0011  Score=47.38  Aligned_cols=19  Identities=21%  Similarity=0.218  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKssli~~l   23 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRF   23 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999987

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.58  E-value=0.0012  Score=47.42  Aligned_cols=19  Identities=26%  Similarity=0.183  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKssli~~l   23 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRF   23 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999887

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.57  E-value=0.0012  Score=47.46  Aligned_cols=19  Identities=16%  Similarity=0.210  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         8 ~i~v~G~~~~GKssli~~l   26 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRY   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4789999999999999887

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.57  E-value=0.0012  Score=47.22  Aligned_cols=19  Identities=26%  Similarity=0.167  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         5 ki~v~G~~~~GKssli~~l   23 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999988

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.57  E-value=0.0012  Score=47.88  Aligned_cols=19  Identities=26%  Similarity=0.266  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        11 ~i~v~G~~~~GKssl~~~l   29 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRF   29 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.57  E-value=0.0014  Score=47.49  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.4

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.-.++++|+.|+|||||++.+
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l   28 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAI   28 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHH
Confidence            3456899999999999999987

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.56  E-value=0.0012  Score=47.88  Aligned_cols=19  Identities=16%  Similarity=0.249  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        10 ~i~v~G~~~~GKSsli~~l   28 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRY   28 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999887

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.56  E-value=0.0012  Score=48.79  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=18.4

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+.|+|||||++.+
T Consensus        24 ~~i~v~G~~~~GKSsli~~l   43 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSL   43 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            45899999999999999998

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.56  E-value=0.0012  Score=47.31  Aligned_cols=19  Identities=26%  Similarity=0.216  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKssli~~l   23 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRF   23 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            3789999999999999988

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.56  E-value=0.0012  Score=47.41  Aligned_cols=18  Identities=28%  Similarity=0.331  Sum_probs=17.2

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         5 i~ivG~~~~GKSsli~~l   22 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTF   22 (169)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999988

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.55  E-value=0.0012  Score=47.78  Aligned_cols=19  Identities=21%  Similarity=0.225  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         9 ~i~v~G~~~~GKSsli~~l   27 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRY   27 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3799999999999999988

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.54  E-value=0.0013  Score=52.46  Aligned_cols=22  Identities=32%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++.|.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999843

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.54  E-value=0.0013  Score=47.53  Aligned_cols=19  Identities=16%  Similarity=0.104  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         6 ki~i~G~~~vGKSsl~~~l   24 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLF   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHH
Confidence            4899999999999999988

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.0056  Score=52.20  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=21.3

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++-.=+.|.||.|+|||+|.++++.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            34445689999999999999999954

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.52  E-value=0.0014  Score=51.34  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=22.0

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +|.++++.|+.||||||+.+.|..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999999954

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.51  E-value=0.0029  Score=51.11  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=21.4

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+.-+.|.||.|+|||++.+.|..
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHH
Confidence            3456788999999999999999965

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.51  E-value=0.0015  Score=48.05  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        25 ~i~v~G~~~~GKSsli~~l   43 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNAL   43 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999987

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.51  E-value=0.0014  Score=47.14  Aligned_cols=20  Identities=25%  Similarity=0.311  Sum_probs=18.2

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++++|+.|+|||||++.+
T Consensus         8 ~~i~v~G~~~~GKssl~~~l   27 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRL   27 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            45899999999999999988

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.50  E-value=0.0014  Score=48.10  Aligned_cols=18  Identities=33%  Similarity=0.392  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         4 i~v~G~~~~GKSsli~~l   21 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRL   21 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999887

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.50  E-value=0.0015  Score=50.32  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=21.9

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +|.++++-|+.||||||..+.|..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999999954

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.49  E-value=0.0014  Score=52.30  Aligned_cols=19  Identities=21%  Similarity=0.218  Sum_probs=18.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|++|+|||||++.+
T Consensus         5 kI~lvG~~nvGKSTL~n~L   23 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLI   23 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999998

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.49  E-value=0.0015  Score=49.73  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.5

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++|+|+.||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999943

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.48  E-value=0.0014  Score=47.44  Aligned_cols=19  Identities=26%  Similarity=0.148  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        11 ~i~v~G~~~~GKssli~~l   29 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQF   29 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999887

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.45  E-value=0.0016  Score=55.01  Aligned_cols=27  Identities=26%  Similarity=0.214  Sum_probs=22.7

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +.-.+..+++|+|++||||||+.+.+.
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHT
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            344567899999999999999999874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.45  E-value=0.0015  Score=47.70  Aligned_cols=19  Identities=26%  Similarity=0.244  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         6 ki~v~G~~~~GKSsli~~l   24 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQL   24 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999988

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.45  E-value=0.0016  Score=46.64  Aligned_cols=19  Identities=21%  Similarity=0.251  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         8 ~i~v~G~~~~GKssli~~l   26 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRF   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999887

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.44  E-value=0.0016  Score=47.10  Aligned_cols=19  Identities=21%  Similarity=0.244  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        16 ~i~v~G~~~~GKssli~~l   34 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRF   34 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.42  E-value=0.0016  Score=49.69  Aligned_cols=24  Identities=21%  Similarity=0.124  Sum_probs=20.7

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++-+++|+|+.||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999943

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.41  E-value=0.0017  Score=47.59  Aligned_cols=19  Identities=21%  Similarity=0.153  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        13 ki~v~G~~~~GKSsli~~l   31 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQY   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999987

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.41  E-value=0.0039  Score=46.81  Aligned_cols=33  Identities=18%  Similarity=0.055  Sum_probs=26.8

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +..++..-+.+. |.-+++.|++|+||||+...+
T Consensus         4 ~~~lHas~v~v~-G~gvli~G~SGaGKStlal~L   36 (181)
T 3tqf_A            4 KQTWHANFLVID-KMGVLITGEANIGKSELSLAL   36 (181)
T ss_dssp             CEEEESEEEEET-TEEEEEEESSSSSHHHHHHHH
T ss_pred             cEEEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHH
Confidence            445666677765 889999999999999997766

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.41  E-value=0.0017  Score=48.04  Aligned_cols=19  Identities=16%  Similarity=0.228  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        27 ki~v~G~~~~GKSsLi~~l   45 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRF   45 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999987

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.40  E-value=0.0017  Score=47.25  Aligned_cols=19  Identities=21%  Similarity=0.186  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        20 ki~v~G~~~~GKSsli~~l   38 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQF   38 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999887

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.40  E-value=0.0018  Score=46.30  Aligned_cols=18  Identities=28%  Similarity=0.484  Sum_probs=17.1

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         3 i~~~G~~~~GKssl~~~l   20 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKL   20 (164)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999988

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.39  E-value=0.0021  Score=49.74  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -...+..++.|+||.||||+|..+.|
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L   49 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKL   49 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHH
Confidence            34567789999999999999999999

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.39  E-value=0.0018  Score=47.99  Aligned_cols=19  Identities=21%  Similarity=0.183  Sum_probs=17.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        22 ki~ivG~~~vGKSsL~~~~   40 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRY   40 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4889999999999999765

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.38  E-value=0.0018  Score=46.80  Aligned_cols=19  Identities=21%  Similarity=0.240  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        17 ~i~v~G~~~~GKSsli~~l   35 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQF   35 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999987

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.38  E-value=0.0018  Score=47.37  Aligned_cols=19  Identities=32%  Similarity=0.305  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        12 ki~v~G~~~~GKSsli~~l   30 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQF   30 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999987

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.38  E-value=0.0021  Score=49.85  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=21.3

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +|.+++|.|+-||||||+.+.|..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            367899999999999999999954

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.36  E-value=0.0019  Score=47.60  Aligned_cols=19  Identities=26%  Similarity=0.212  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        23 ki~vvG~~~~GKSsli~~l   41 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQL   41 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5889999999999999988

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.36  E-value=0.0019  Score=46.82  Aligned_cols=19  Identities=21%  Similarity=0.298  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         8 ki~v~G~~~~GKssl~~~l   26 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCF   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4789999999999999998

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.36  E-value=0.0023  Score=49.72  Aligned_cols=26  Identities=19%  Similarity=0.124  Sum_probs=23.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+|.++++.|+.||||||+.+.+...
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999999999653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.35  E-value=0.0019  Score=47.48  Aligned_cols=20  Identities=30%  Similarity=0.419  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++|+|+.|+|||||++.+.
T Consensus        16 ki~vvG~~~~GKssL~~~l~   35 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIY   35 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999998773

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.35  E-value=0.0019  Score=47.15  Aligned_cols=20  Identities=25%  Similarity=0.069  Sum_probs=17.9

Q ss_pred             eEEEEccCCCcHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++|+|+.|+|||||++.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFF   39 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999873

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.35  E-value=0.0022  Score=49.63  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=22.5

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+|.++++-|+.||||||+.+.|..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~   27 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYK   27 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999999944

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.35  E-value=0.0041  Score=50.85  Aligned_cols=33  Identities=21%  Similarity=0.041  Sum_probs=28.6

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ...++...+.+ .|.-++++|++|+||||+...+
T Consensus       132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l  164 (314)
T 1ko7_A          132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALEL  164 (314)
T ss_dssp             EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHH
T ss_pred             ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHH
Confidence            45778888888 5899999999999999998777

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.34  E-value=0.0019  Score=47.50  Aligned_cols=19  Identities=21%  Similarity=0.319  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         9 ki~v~G~~~~GKSsli~~l   27 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRL   27 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999988

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.34  E-value=0.0019  Score=47.46  Aligned_cols=19  Identities=21%  Similarity=0.321  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         9 ki~v~G~~~vGKSsli~~l   27 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVF   27 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.32  E-value=0.002  Score=46.76  Aligned_cols=19  Identities=21%  Similarity=0.210  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        14 ki~v~G~~~~GKSsli~~l   32 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRF   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999887

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.32  E-value=0.0021  Score=46.70  Aligned_cols=19  Identities=16%  Similarity=0.204  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        12 ~i~v~G~~~~GKssli~~l   30 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRF   30 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999987

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.31  E-value=0.0021  Score=46.87  Aligned_cols=19  Identities=21%  Similarity=0.095  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         8 ki~~~G~~~~GKSsli~~l   26 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQF   26 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5889999999999999987

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.30  E-value=0.0021  Score=48.57  Aligned_cols=19  Identities=21%  Similarity=0.529  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        14 ~i~~~G~~g~GKTsl~~~l   32 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLL   32 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999987

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.30  E-value=0.0021  Score=47.80  Aligned_cols=19  Identities=21%  Similarity=0.186  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        16 ki~v~G~~~~GKSsli~~l   34 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQF   34 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4889999999999999987

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.29  E-value=0.0017  Score=48.57  Aligned_cols=19  Identities=26%  Similarity=0.256  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        25 ki~vvG~~~vGKSsLi~~l   43 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTF   43 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999987

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.012  Score=50.13  Aligned_cols=25  Identities=12%  Similarity=0.106  Sum_probs=20.8

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.-.=+.|.||.|+|||+|.++++.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHH
Confidence            3335589999999999999999954

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.27  E-value=0.0022  Score=47.25  Aligned_cols=19  Identities=26%  Similarity=0.209  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        18 ki~v~G~~~~GKSsli~~l   36 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRF   36 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999988

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.27  E-value=0.013  Score=53.04  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVF   61 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~   61 (185)
                      .+.+.||.|+|||++.+.|+....
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~  546 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF  546 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            589999999999999999987653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.27  E-value=0.0023  Score=46.63  Aligned_cols=19  Identities=26%  Similarity=0.267  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l   25 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISY   25 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999887

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.26  E-value=0.0022  Score=47.74  Aligned_cols=19  Identities=16%  Similarity=0.251  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        10 ki~v~G~~~~GKSsli~~l   28 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQY   28 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5899999999999999988

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.26  E-value=0.0023  Score=47.35  Aligned_cols=19  Identities=26%  Similarity=0.235  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        10 ki~vvG~~~~GKSsli~~l   28 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRF   28 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            5899999999999999988

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.26  E-value=0.0026  Score=49.07  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.+++|+|+.||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999943

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.25  E-value=0.0029  Score=53.88  Aligned_cols=24  Identities=25%  Similarity=0.247  Sum_probs=20.9

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +..-+.|.||.|+|||+|.+.++.
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346689999999999999999965

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.25  E-value=0.0024  Score=46.87  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.-.++++|+.|+|||||++.+
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l   38 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKF   38 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHH
Confidence            3446899999999999999987

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.24  E-value=0.0022  Score=48.65  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.6

Q ss_pred             ceeEEEEccCCCcHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +-+++|+|+.||||||+.+.|.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~   24 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVA   24 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999983

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.01  Score=51.03  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=21.4

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++-.=+.|.||.|+|||+|.|+|+.
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHh
Confidence            34445688999999999999999954

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.24  E-value=0.0024  Score=51.67  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=18.5

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+++|+|+.|+|||||++.+
T Consensus         8 g~V~ivG~~nvGKSTLln~l   27 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNL   27 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46999999999999999998

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.23  E-value=0.0024  Score=47.36  Aligned_cols=19  Identities=21%  Similarity=0.135  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        25 ki~vvG~~~~GKSsli~~l   43 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRF   43 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999988

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.23  E-value=0.0022  Score=50.80  Aligned_cols=18  Identities=44%  Similarity=0.484  Sum_probs=17.2

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.|
T Consensus        11 I~vvG~~g~GKSTLin~L   28 (274)
T 3t5d_A           11 LMVVGESGLGKSTLINSL   28 (274)
T ss_dssp             EEEEECTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            889999999999999987

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.23  E-value=0.0026  Score=48.19  Aligned_cols=22  Identities=18%  Similarity=0.064  Sum_probs=19.3

Q ss_pred             ceeEEEEccCCCcHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      -..++++|+.|+|||||++.+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~   51 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTI   51 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Confidence            3579999999999999998883

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.21  E-value=0.0025  Score=46.96  Aligned_cols=19  Identities=21%  Similarity=0.307  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        24 ki~vvG~~~~GKSsli~~l   42 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRY   42 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999987

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.20  E-value=0.0025  Score=48.06  Aligned_cols=19  Identities=21%  Similarity=0.263  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        28 ki~lvG~~~vGKSsLi~~l   46 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRF   46 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999987

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.20  E-value=0.0026  Score=52.61  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=19.7

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|.||+|||||||.+.|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4899999999999999988854

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.20  E-value=0.013  Score=53.61  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=20.2

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +-.-+.|.||.|+|||+|.|.++.
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~  260 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVAN  260 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            335588999999999999999853

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.19  E-value=0.0023  Score=53.41  Aligned_cols=19  Identities=26%  Similarity=0.209  Sum_probs=17.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|++|+|||||++.+
T Consensus         3 ~v~IVG~pnvGKSTL~n~L   21 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNAL   21 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999999

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.19  E-value=0.0026  Score=47.63  Aligned_cols=19  Identities=32%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        27 ki~v~G~~~~GKSsLi~~l   45 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQF   45 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999998

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.19  E-value=0.0026  Score=47.19  Aligned_cols=19  Identities=16%  Similarity=0.309  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        28 ki~vvG~~~~GKSsLi~~l   46 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERF   46 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3889999999999999998

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.18  E-value=0.0026  Score=47.50  Aligned_cols=21  Identities=14%  Similarity=0.164  Sum_probs=18.7

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .-.++|+|+.|+|||||++.+
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l   44 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQF   44 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHH
Confidence            345899999999999999988

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.18  E-value=0.019  Score=51.83  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      .+.+.||.|+|||++.+.++...
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Confidence            58899999999999999997643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.16  E-value=0.0028  Score=46.89  Aligned_cols=19  Identities=21%  Similarity=0.239  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        23 ki~v~G~~~~GKSsli~~l   41 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQF   41 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            3889999999999999988

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.16  E-value=0.0028  Score=46.89  Aligned_cols=18  Identities=22%  Similarity=0.408  Sum_probs=17.2

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus        26 i~v~G~~~~GKSsli~~l   43 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRY   43 (191)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            899999999999999987

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.15  E-value=0.0028  Score=46.63  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=18.7

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .-.++++|+.|+|||||++.+
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l   36 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQF   36 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHH
Confidence            346899999999999999987

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.15  E-value=0.0023  Score=48.14  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ...++.|.-..--.++++|+.|+|||||++.+
T Consensus        14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l   45 (207)
T 2fv8_A           14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVF   45 (207)
T ss_dssp             -----CGGGSEEEEEEEEECTTSSHHHHHHHH
T ss_pred             cccccccccccCcEEEEECcCCCCHHHHHHHH
Confidence            45555555444456899999999999999988

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.15  E-value=0.0032  Score=51.57  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             ceeEEEEccCCCcHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +.+++|.||+|||||||.+.|.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La   24 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLA   24 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHH
Confidence            5689999999999999998884

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.14  E-value=0.0029  Score=46.66  Aligned_cols=19  Identities=21%  Similarity=0.177  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        22 ki~v~G~~~~GKSsli~~l   40 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRF   40 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999987

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.14  E-value=0.0074  Score=52.57  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=61.0

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH---HHHHHhh--CceecCCCC----CcchhhHHHhhcCcccccccCcCccHHH-HHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV---SVFLAQI--GCFVPCDSA----TISVVDQIFTRVGAADSQYRGISTFMME-MKE  105 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~---i~~~~~~--g~~v~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~lS~g-~~q  105 (185)
                      ..+++|+|+-|.|||||.+.+..   -.+..+.  ..++.-...    .......++..++..... ..+.....+ ..+
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~  230 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDL-LNFPSVEHVTSVV  230 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCC-TTCCCCTTCCHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCccc-ccccccccccHHH
Confidence            47999999999999999887653   1111111  123322221    122455666666543210 111122111 222


Q ss_pred             HH-HHHHhC-CC-CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297         106 TA-TVIKKC-TE-NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus       106 ~~-~ia~~l-~~-p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      .. .+...+ .+ +-+|+||-.      .+....  .+ ..  . .|..||+||-+..+...
T Consensus       231 l~~~l~~~L~~~kr~LlVLDdv------~~~~~~--~~-~~--~-~gs~ilvTTR~~~v~~~  280 (549)
T 2a5y_B          231 LKRMICNALIDRPNTLFVFDDV------VQEETI--RW-AQ--E-LRLRCLVTTRDVEISNA  280 (549)
T ss_dssp             HHHHHHHHHTTSTTEEEEEEEE------CCHHHH--HH-HH--H-TTCEEEEEESBGGGGGG
T ss_pred             HHHHHHHHHcCCCcEEEEEECC------CCchhh--cc-cc--c-CCCEEEEEcCCHHHHHH
Confidence            22 344455 54 889999987      222222  11 11  1 58899999988555543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.13  E-value=0.0029  Score=51.19  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.1

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.+++|+|+.|+|||||++.+
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l   30 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNL   30 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHH
Confidence            357999999999999999988

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.12  E-value=0.0028  Score=46.43  Aligned_cols=19  Identities=21%  Similarity=0.361  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        23 ~i~v~G~~~~GKSsli~~l   41 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQF   41 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999988

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.003  Score=46.42  Aligned_cols=19  Identities=26%  Similarity=0.273  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        17 ~i~v~G~~~~GKssli~~l   35 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRF   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999988

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.11  E-value=0.0024  Score=47.10  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=18.1

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      =.++++|+.|+|||||++.+
T Consensus        22 ~ki~v~G~~~~GKSsli~~l   41 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKL   41 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999988

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.10  E-value=0.003  Score=47.07  Aligned_cols=19  Identities=26%  Similarity=0.191  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus         8 kv~lvG~~~vGKSsL~~~~   26 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIF   26 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999887

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.10  E-value=0.003  Score=47.20  Aligned_cols=19  Identities=26%  Similarity=0.205  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        10 ki~v~G~~~~GKSsli~~l   28 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRF   28 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999988

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.10  E-value=0.0031  Score=46.70  Aligned_cols=19  Identities=21%  Similarity=0.263  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        25 ki~~vG~~~~GKSsl~~~l   43 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAF   43 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5899999999999999987

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.10  E-value=0.0031  Score=46.99  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        10 ki~v~G~~~~GKSsli~~l   28 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRY   28 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999887

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.10  E-value=0.003  Score=52.61  Aligned_cols=20  Identities=25%  Similarity=0.142  Sum_probs=18.6

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|.+|+|||||++.+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~L   22 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNAL   22 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            45899999999999999999

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.09  E-value=0.0031  Score=46.53  Aligned_cols=19  Identities=26%  Similarity=0.424  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        24 ki~v~G~~~~GKSsli~~l   42 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVI   42 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999987

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.09  E-value=0.0037  Score=45.42  Aligned_cols=19  Identities=21%  Similarity=0.207  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        10 ki~v~G~~~~GKssl~~~~   28 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISY   28 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999887

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.09  E-value=0.0036  Score=47.82  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      |.++++=|+-||||||+.+.|..
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~   24 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYH   24 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            57899999999999999999954

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.07  E-value=0.0033  Score=49.12  Aligned_cols=20  Identities=30%  Similarity=0.182  Sum_probs=18.2

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+.|+|||||++.+
T Consensus        23 ~~I~lvG~~g~GKStl~n~l   42 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSI   42 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            45899999999999999887

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.07  E-value=0.0032  Score=46.72  Aligned_cols=20  Identities=20%  Similarity=0.094  Sum_probs=18.0

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      =.++|+|+.|+|||||++.+
T Consensus        29 ~ki~v~G~~~vGKSsli~~l   48 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRF   48 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999887

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.06  E-value=0.0021  Score=50.61  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .++.+++|.|+-||||||+.+.|.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~   45 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILK   45 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHH
Confidence            567899999999999999999984

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.06  E-value=0.0033  Score=46.43  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .-.++|+|+.|+|||||++.+
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l   37 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQV   37 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHH
Confidence            346899999999999999998

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.05  E-value=0.0033  Score=46.75  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.7

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .-.++++|+.|+|||||++.+
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l   49 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKL   49 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHH
Confidence            346899999999999999987

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.05  E-value=0.0033  Score=46.81  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=18.7

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .=.++|+|+.|+|||||++.+
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l   48 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRL   48 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHH
Confidence            346899999999999999988

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.04  E-value=0.0033  Score=47.47  Aligned_cols=19  Identities=21%  Similarity=0.321  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        30 ki~vvG~~~vGKSsLi~~l   48 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVF   48 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999987

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.04  E-value=0.0037  Score=51.32  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|+||+|||||||.+.|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998843

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.03  E-value=0.0035  Score=49.41  Aligned_cols=19  Identities=26%  Similarity=0.429  Sum_probs=17.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus         3 kI~lvG~~n~GKSTL~n~L   21 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNAL   21 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999998

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.02  E-value=0.003  Score=54.36  Aligned_cols=27  Identities=15%  Similarity=-0.105  Sum_probs=23.8

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +.+-+|+..+|+||+|+|||||++.|-
T Consensus       146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~  172 (473)
T 1sky_E          146 APYIKGGKIGLFGGAGVGKTVLIQELI  172 (473)
T ss_dssp             SCEETTCEEEEECCSSSCHHHHHHHHH
T ss_pred             hhhccCCEEEEECCCCCCccHHHHHHH
Confidence            445689999999999999999999883

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.01  E-value=0.0042  Score=51.26  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=20.7

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++.+++|+||.|||||||.+.|..
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999888743

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.00  E-value=0.0036  Score=47.40  Aligned_cols=19  Identities=16%  Similarity=0.226  Sum_probs=17.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        36 ki~vvG~~~vGKSsli~~l   54 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVF   54 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5889999999999999988

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.00  E-value=0.0037  Score=46.47  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=18.2

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      =.++++|+.|+|||||++.+
T Consensus        21 ~ki~~~G~~~~GKssl~~~l   40 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSY   40 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999988

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.99  E-value=0.0036  Score=46.78  Aligned_cols=20  Identities=25%  Similarity=0.182  Sum_probs=18.1

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      =.++|+|+.|+|||||++.+
T Consensus        21 ~~i~v~G~~~~GKSsli~~l   40 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRF   40 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999887

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.99  E-value=0.0027  Score=46.14  Aligned_cols=19  Identities=32%  Similarity=0.260  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         9 ki~~vG~~~vGKTsli~~l   27 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRF   27 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.98  E-value=0.004  Score=47.29  Aligned_cols=22  Identities=23%  Similarity=0.098  Sum_probs=19.2

Q ss_pred             ceeEEEEccCCCcHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      --.++|+|+.|+|||||++.+.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~   59 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLI   59 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Confidence            3578999999999999998884

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.98  E-value=0.0022  Score=48.55  Aligned_cols=20  Identities=30%  Similarity=0.277  Sum_probs=18.3

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+.|+|||||++.+
T Consensus        30 ~~i~v~G~~~~GKSslin~l   49 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVL   49 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHH
Confidence            46899999999999999987

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.97  E-value=0.0038  Score=46.47  Aligned_cols=19  Identities=26%  Similarity=0.321  Sum_probs=17.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        22 ki~~vG~~~vGKTsLi~~l   40 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVV   40 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999865

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.97  E-value=0.0037  Score=47.06  Aligned_cols=19  Identities=26%  Similarity=0.273  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        27 ki~vvG~~~~GKSsLi~~l   45 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRY   45 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999887

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.96  E-value=0.0038  Score=47.72  Aligned_cols=20  Identities=20%  Similarity=0.408  Sum_probs=18.4

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+.|+|||||++.+
T Consensus        30 ~kI~vvG~~~vGKSsLin~l   49 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIV   49 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999988

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.95  E-value=0.004  Score=46.03  Aligned_cols=19  Identities=21%  Similarity=0.153  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        23 ki~vvG~~~vGKTsLi~~l   41 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKF   41 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            4899999999999999876

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.92  E-value=0.0041  Score=46.47  Aligned_cols=19  Identities=16%  Similarity=0.237  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        27 ki~vvG~~~~GKSsli~~l   45 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVF   45 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4889999999999999887

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.92  E-value=0.0032  Score=46.33  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.6

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .=.++++|+.|+|||||++.+
T Consensus        22 ~~~i~v~G~~~~GKssli~~l   42 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRL   42 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHH
Confidence            345899999999999999987

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.90  E-value=0.0042  Score=45.84  Aligned_cols=19  Identities=26%  Similarity=0.279  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        20 ki~v~G~~~~GKssli~~l   38 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSY   38 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999988

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.90  E-value=0.0024  Score=46.57  Aligned_cols=19  Identities=21%  Similarity=0.160  Sum_probs=9.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        10 ki~v~G~~~~GKssl~~~l   28 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRF   28 (183)
T ss_dssp             EEEEECCCCC---------
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999988

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.89  E-value=0.0043  Score=46.63  Aligned_cols=19  Identities=21%  Similarity=0.197  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         9 ki~vvG~~~~GKTsli~~l   27 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRL   27 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999887

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.86  E-value=0.0054  Score=50.10  Aligned_cols=23  Identities=17%  Similarity=0.288  Sum_probs=20.1

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+++|.||+|||||||.+.+..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            46899999999999999988843

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.83  E-value=0.0049  Score=48.60  Aligned_cols=19  Identities=16%  Similarity=0.191  Sum_probs=17.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus         7 kI~lvG~~nvGKTsL~n~l   25 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNAL   25 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999998

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.82  E-value=0.0052  Score=43.88  Aligned_cols=25  Identities=16%  Similarity=-0.013  Sum_probs=20.9

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+.-+.|.||.|+|||++.+.|..
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHH
Confidence            3455689999999999999999854

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.82  E-value=0.0049  Score=48.95  Aligned_cols=19  Identities=21%  Similarity=0.228  Sum_probs=17.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus         5 ~I~lvG~~n~GKSTLin~l   23 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQL   23 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999998

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.81  E-value=0.0048  Score=46.29  Aligned_cols=20  Identities=25%  Similarity=0.223  Sum_probs=18.0

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      =.++++|+.|+|||||++.+
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l   50 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISY   50 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHH
Confidence            46899999999999999877

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.81  E-value=0.0048  Score=49.42  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=18.5

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+.|+|||||++.|
T Consensus        25 ~~I~vvG~~~~GKSTlln~l   44 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENI   44 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHH
Confidence            35999999999999999998

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.80  E-value=0.005  Score=46.11  Aligned_cols=19  Identities=16%  Similarity=0.235  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        31 ki~vvG~~~vGKSsli~~l   49 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRF   49 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999988

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.78  E-value=0.0055  Score=46.89  Aligned_cols=19  Identities=26%  Similarity=0.429  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++.|+||.||||+|..+.|
T Consensus         2 ~Iil~GpPGsGKgTqa~~L   20 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRL   20 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999999

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.76  E-value=0.0012  Score=51.78  Aligned_cols=20  Identities=25%  Similarity=0.428  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.|.||.|+|||||.+.++.
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999965

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.67  E-value=0.006  Score=45.38  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             eEEEEccCCCcHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+.|.||.|+||||+++.+..-
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.65  E-value=0.0063  Score=48.23  Aligned_cols=19  Identities=37%  Similarity=0.410  Sum_probs=18.3

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|.+|+|||||++.+
T Consensus       101 ~v~~vG~~~vGKSslin~l  119 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKL  119 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             heEEeCCCCCCHHHHHHHH
Confidence            7899999999999999998

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.64  E-value=0.0062  Score=46.15  Aligned_cols=19  Identities=16%  Similarity=0.279  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        29 ki~vvG~~~vGKSsL~~~l   47 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVL   47 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4889999999999999987

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.64  E-value=0.0062  Score=46.55  Aligned_cols=19  Identities=26%  Similarity=0.191  Sum_probs=17.3

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        39 kVvlvG~~~vGKSSLl~r~   57 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIF   57 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999876

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.60  E-value=0.0062  Score=48.29  Aligned_cols=19  Identities=26%  Similarity=0.337  Sum_probs=18.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        28 ~i~vvG~~~~GKSSLln~l   46 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENF   46 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHH
Confidence            5999999999999999998

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.60  E-value=0.0065  Score=45.53  Aligned_cols=19  Identities=16%  Similarity=0.167  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        11 ki~i~G~~~~GKTsli~~l   29 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICY   29 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999887

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.59  E-value=0.0069  Score=47.78  Aligned_cols=19  Identities=42%  Similarity=0.398  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        41 ~I~vvG~~g~GKSSLin~l   59 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSI   59 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999987

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.0066  Score=46.11  Aligned_cols=19  Identities=21%  Similarity=0.226  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        15 ki~v~G~~~vGKSsli~~l   33 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRF   33 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            4899999999999999988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1wb9a2	234	c.37.1.12 (A:567-800) DNA repair protein MutS, the	7e-37
d1ewqa2	224	c.37.1.12 (A:542-765) DNA repair protein MutS, the	1e-30

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Length = 234

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  125 bits (315), Expect = 7e-37
 Identities = 76/183 (41%), Positives = 107/183 (58%), Gaps = 1/183 (0%)

Query: 3   TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 62
              + + + RHP+VE      +I N +   S +    ++TGPNMGGKSTY+R   +   +
Sbjct: 9   KPGIRITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALM 67

Query: 63  AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIID 122
           A IG +VP     I  +D+IFTRVGAAD    G STFM+EM ETA ++   TE SLV++D
Sbjct: 68  AYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMD 127

Query: 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYH 182
           E+GRGTST+DG  +A + A  LA+  +  TLFATH+ E+  L   +    NVH     + 
Sbjct: 128 EIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHG 187

Query: 183 TNV 185
             +
Sbjct: 188 DTI 190

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score =  109 bits (272), Expect = 1e-30
 Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 5/160 (3%)

Query: 3   TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 62
              L +   RHP+VE +    ++PND+          L+TGPNM GKST++R   +   L
Sbjct: 7   GDRLQIRAGRHPVVERR--TEFVPNDLEMAH---ELVLITGPNMAGKSTFLRQTALIALL 61

Query: 63  AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIID 122
           AQ+G FVP + A + + D I+TR+GA+D    G STFM+EM+E A ++K+ TENSLV++D
Sbjct: 62  AQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLD 121

Query: 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA 162
           E+GRGTS+ DG  +A ++A  L   R        +F   A
Sbjct: 122 EVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	99.98
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	99.97
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.89
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.74
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.74
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.32
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.07
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.78
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.22
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	98.06
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.96
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.95
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.93
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.92
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.91
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.9
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.89
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.8
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.8
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.78
d1okkd2	207	GTPase domain of the signal recognition particle r	97.72
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.71
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.7
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.68
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.62
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.61
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.61
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.58
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.58
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.58
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.58
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.57
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.56
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.55
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.51
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.5
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.46
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.44
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.43
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.37
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.34
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.32
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.28
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.27
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.22
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.21
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.14
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.11
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.1
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.09
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.09
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.07
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.07
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.03
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.03
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.01
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.01
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.99
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.98
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.97
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.96
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.96
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.94
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.94
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.92
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.86
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.85
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.85
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.84
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.83
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.82
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.81
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.81
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.81
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.79
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.78
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.78
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.77
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.77
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.77
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.75
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.71
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.7
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.69
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.69
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.68
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.67
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.67
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.65
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.65
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.64
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.62
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.62
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.61
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.58
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.57
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.56
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.56
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.54
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.53
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.51
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.49
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.48
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.47
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.46
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.45
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.44
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.44
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.44
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.43
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.41
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.4
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.35
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.35
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.33
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.31
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.29
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.29
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.29
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.28
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.26
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.26
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.23
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.23
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.19
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.17
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.15
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.15
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.13
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.07
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.05
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.04
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.04
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.02
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.01
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.01
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.92
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.91
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.9
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.85
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.84
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.78
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.75
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	95.74
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.73
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.73
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.72
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.72
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.68
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.67
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.65
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.64
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.63
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.62
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.62
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.61
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.61
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.58
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.56
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.5
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.45
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.44
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.35
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.35
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.34
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.32
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.29
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.26
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.26
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.14
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.04
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.02
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.91
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.61
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.47
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.43
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.36
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.23
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	94.21
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.1
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.98
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.76
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.74
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.51
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.49
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.48
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.26
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.2
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	93.15
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.09
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.05
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.37
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.31
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.27
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.26
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.21
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.19
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.81
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.66
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.43
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.39
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.36
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	91.26
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.22
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	91.22
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.05
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.04
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.99
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.7
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.04
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.9
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.49
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.05
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.1
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.4
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	86.14
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	85.87
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.59
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	85.33
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.27
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	84.72
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	84.58
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.17
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	83.73
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	83.65
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.22
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	83.16
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.5
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	81.99

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-49  Score=314.62  Aligned_cols=173  Identities=18%  Similarity=0.143  Sum_probs=144.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI   65 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~   65 (185)
                      .++++|+++.|     ++..+++||||++++||+++|+||||||||||+|+|        |.|.+           ..++
T Consensus         6 ~I~v~nlsk~y-----g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i   80 (239)
T d1v43a3           6 EVKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI   80 (239)
T ss_dssp             CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred             eEEEEEEEEEE-----CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceE
Confidence            37788887766     457899999999999999999999999999999999        44433           2346


Q ss_pred             CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      | |+||++..++                        .++++++.+++.+..++++++||||||||++|||++ .+|+++|
T Consensus        81 g-~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLl  159 (239)
T d1v43a3          81 S-MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL  159 (239)
T ss_dssp             E-EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred             E-EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCcee
Confidence            7 9999884333                        356778999999999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||+|+|+.....+.+.+ ..++++.|.|+|++||| .++.++|||+++|++|++++.|++++
T Consensus       160 lDEPts~LD~~~~~~i~~ll-~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~e  223 (239)
T d1v43a3         160 MDEPLSNLDAKLRVAMRAEI-KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE  223 (239)
T ss_dssp             EESTTTTSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             ecCCcccCCHHHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99998887777766666644 67765469999999999 88899999999999999999998865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-49  Score=312.14  Aligned_cols=172  Identities=19%  Similarity=0.165  Sum_probs=123.9

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG   66 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g   66 (185)
                      ++++|+++.|     +...+++||||++++||+++|+||||||||||+|+|        |.|.+           ..++|
T Consensus         1 Iev~nv~k~y-----g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig   75 (232)
T d2awna2           1 VQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG   75 (232)
T ss_dssp             EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEE
T ss_pred             CEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceee
Confidence            4677777666     457899999999999999999999999999999999        44432           23456


Q ss_pred             ceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297          67 CFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVII  121 (185)
Q Consensus        67 ~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llll  121 (185)
                       |+||++..++                        .++++++.+++.+..++++.+||||||||++|||++ .+|+++||
T Consensus        76 -~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illl  154 (232)
T d2awna2          76 -MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL  154 (232)
T ss_dssp             -EECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEE
T ss_pred             -eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence             9999984433                        366788999999999999999999999999999999 99999999


Q ss_pred             eCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       122 DEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ||||+|+|+.....+...+ ..+.++.|.|+|++||| .++..+|||+++|++|++++.|++++
T Consensus       155 DEPts~LD~~~~~~i~~~l-~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~e  217 (232)
T d2awna2         155 DEPLSNLDAALRVQMRIEI-SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE  217 (232)
T ss_dssp             ESTTTTSCHHHHHHHHHHH-HHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             cCCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            9997777776655565544 66655579999999999 88999999999999999999998765

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=5e-49  Score=311.64  Aligned_cols=173  Identities=15%  Similarity=0.127  Sum_probs=147.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------   61 (185)
                      .++++|++..|     +...+++||||++++||+++|+||||||||||+|+|        |.|.+               
T Consensus         3 ~i~v~nl~k~y-----g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~   77 (240)
T d1g2912           3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP   77 (240)
T ss_dssp             EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred             cEEEEeEEEEE-----CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcc
Confidence            57788887766     457799999999999999999999999999999999        44432               


Q ss_pred             --HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          62 --LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        62 --~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                        +.++| |+||++..++                        .+.++++.+++.+..++++++||||||||++|||++ .
T Consensus        78 ~~~r~ig-~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~  156 (240)
T d1g2912          78 PKDRDIA-MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR  156 (240)
T ss_dssp             GGGSSEE-EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred             cccccce-ecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence              12456 9999984443                        256778899999999999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+|+|+.....+.+.+ ..+.++.|.|||++||| .++..+|||+++|++|++++.|++++
T Consensus       157 ~P~iLllDEPt~~LD~~~~~~i~~~l-~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~e  226 (240)
T d1g2912         157 KPQVFLMDEPLSNLDAKLRVRMRAEL-KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE  226 (240)
T ss_dssp             CCSEEEEECTTTTSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEecCCCcccCHHHHHHHHHHH-HHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999997777777766666654 66665469999999999 88899999999999999999998865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.7e-49  Score=311.73  Aligned_cols=175  Identities=14%  Similarity=0.116  Sum_probs=149.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------   61 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------   61 (185)
                      .++++|+++.|   .++...+++||||++++||+++|+||||||||||+|+|        |.|.+               
T Consensus         3 ~i~v~nlsk~y---~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~   79 (242)
T d1oxxk2           3 RIIVKNVSKVF---KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP   79 (242)
T ss_dssp             CEEEEEEEEEE---GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred             EEEEEeEEEEE---CCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcch
Confidence            47888888766   23446799999999999999999999999999999999        33332               


Q ss_pred             -HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          62 -LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        62 -~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                       +.++| ||||++..++                        .+.++++.+++++..++++++||||||||++|||++ .+
T Consensus        80 ~rr~ig-~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~  158 (242)
T d1oxxk2          80 EDRKIG-MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD  158 (242)
T ss_dssp             GGSCEE-EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hhccce-EEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhc
Confidence             23567 9999984443                        256778899999999999999999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |++||+||||+|+|+.....+...+ ..+.++.|.|+|++||| .++.++|||+++|++|++++.|++++
T Consensus       159 P~llllDEPt~~LD~~~~~~i~~~i-~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~e  227 (242)
T d1oxxk2         159 PSLLLLDEPFSNLDARMRDSARALV-KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED  227 (242)
T ss_dssp             CSEEEEESTTTTSCGGGHHHHHHHH-HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             ccceeecCCccCCCHHHHHHHHHHH-HHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999998888888877776655 67765469999999999 88899999999999999999998865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=9.8e-49  Score=307.80  Aligned_cols=171  Identities=13%  Similarity=0.115  Sum_probs=144.9

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG   66 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g   66 (185)
                      ++++|+++.|      +.++++||||++++||+++|+||||||||||+|+|        |.|.+           +.++|
T Consensus         2 i~v~nlsk~y------~~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig   75 (229)
T d3d31a2           2 IEIESLSRKW------KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA   75 (229)
T ss_dssp             EEEEEEEEEC------SSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE
T ss_pred             EEEEEEEEEe------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcce
Confidence            5677777665      13589999999999999999999999999999999        33322           34567


Q ss_pred             ceecCCCCCcc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297          67 CFVPCDSATIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDEL  124 (185)
Q Consensus        67 ~~v~~~~~~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP  124 (185)
                       |+||++..++                     .+.++++.+++.+..++++++||||||||++|||++ .+|+++|||||
T Consensus        76 -~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEP  154 (229)
T d3d31a2          76 -FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP  154 (229)
T ss_dssp             -EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred             -eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCC
Confidence             9999985443                     255677889999999999999999999999999999 99999999999


Q ss_pred             CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+|+|+.....+.+.+ ..+.++.|.|||++||| .++.++|||+++|++|++++.|++++
T Consensus       155 ts~LD~~~~~~i~~~l-~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~e  214 (229)
T d3d31a2         155 LSALDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE  214 (229)
T ss_dssp             STTSCHHHHHHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred             CcCCCHHHHHHHHHHH-HHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            7777777666666644 67665479999999999 88999999999999999999999875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-47  Score=302.34  Aligned_cols=177  Identities=16%  Similarity=0.133  Sum_probs=147.7

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH----------------HH
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS----------------VF   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i----------------~~   61 (185)
                      ++++|+++.|-.- +....|++||||++++||+++|+||||||||||+|+|        |.|                .+
T Consensus         2 i~v~nlsk~y~~~-~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           2 IKLSNITKVFHQG-TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             EEEEEEEEEEECS-SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             EEEEeEEEEeCCC-CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            6788887766331 1123589999999999999999999999999999999        222                22


Q ss_pred             HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297          62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN  116 (185)
Q Consensus        62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p  116 (185)
                      +.++| ||||++..++                        .+.++++.+|+.+..++++.+||||||||++|||++ .+|
T Consensus        81 rr~ig-~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P  159 (240)
T d3dhwc1          81 RRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (240)
T ss_dssp             HHHEE-ECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCC
T ss_pred             hcccc-ccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCC
Confidence            35677 9999984433                        256788999999999999999999999999999999 999


Q ss_pred             eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      ++||+||||+|+|+.....+.+.+ ..+.++.|.|+|++||| .++..+|||+++|++|++++.|+++++
T Consensus       160 ~lLllDEPt~~LD~~~~~~i~~~l-~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei  228 (240)
T d3dhwc1         160 KVLLCDEATSALDPATTRSILELL-KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV  228 (240)
T ss_dssp             SEEEEESGGGSSCHHHHHHHHHHH-HHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred             CeEEeccccccCCHHHhhHHHHHH-HHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999997777776666665544 67766569999999999 888899999999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=4.7e-47  Score=301.09  Aligned_cols=177  Identities=14%  Similarity=0.107  Sum_probs=146.3

Q ss_pred             CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297           1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------   61 (185)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------   61 (185)
                      |++..++++|++..|     ++..+++||||++++||+++|+||||||||||+|+|        |.|.+           
T Consensus         2 ~sd~~Lev~~l~k~y-----g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~   76 (240)
T d1ji0a_           2 VSDIVLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH   76 (240)
T ss_dssp             CCSEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred             CcceEEEEeeEEEEE-----CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHH
Confidence            577889999998766     457899999999999999999999999999999999        33322           


Q ss_pred             -HHhhC-ceecCCCCC---cchh--------------------hHHHhhc-CcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          62 -LAQIG-CFVPCDSAT---ISVV--------------------DQIFTRV-GAADSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        62 -~~~~g-~~v~~~~~~---~~~~--------------------~~~l~~~-~l~~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                       ..+.| .|+||+...   +++.                    +.+++.+ ++.+..++++++||||||||++|||++ .
T Consensus        77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~  156 (240)
T d1ji0a_          77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS  156 (240)
T ss_dssp             HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence             23332 389998733   3332                    2333444 567788999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|++|||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++.++|||+++|++|+++++|++++
T Consensus       157 ~P~lLllDEPt~gLD~~~~~~i~~~i-~~l~~-~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e  225 (240)
T d1ji0a_         157 RPKLLMMDEPSLGLAPILVSEVFEVI-QKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHH-HHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred             CCCEeeecCCCcCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999998888887777776654 77877 59999999999 88999999999999999999998865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.6e-47  Score=298.72  Aligned_cols=174  Identities=14%  Similarity=0.149  Sum_probs=139.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F   61 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~   61 (185)
                      ++++|+++.|-.- +....+++||||++++||+++|+||||||||||+|+|        |.|.                +
T Consensus         2 I~i~nlsk~y~~~-~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           2 IKLKNVTKTYKMG-EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEeEEEEeCCC-CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            6788887766431 1123489999999999999999999999999999999        3221                1


Q ss_pred             -HHhhCceecCCCCCc---ch------------------------hhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHh
Q psy5297          62 -LAQIGCFVPCDSATI---SV------------------------VDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        62 -~~~~g~~v~~~~~~~---~~------------------------~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                       +.++| ||||++..+   ++                        +.++++.+++.+ ..+++|.+||||||||++||||
T Consensus        81 r~~~ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAra  159 (230)
T d1l2ta_          81 RRDKIG-FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (230)
T ss_dssp             HHHHEE-EECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             hcceEE-EEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhh
Confidence             23577 999987433   22                        345667778865 4788999999999999999999


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEecc
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      + .+|+++||||||+++|+.....+.+.+ ..+.++.|.|+|++|||.+++++|||+++|++|+|+.++..
T Consensus       160 L~~~P~lLllDEPTs~LD~~~~~~i~~~l-~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         160 LANNPPIILADQPTGALDSKTGEKIMQLL-KKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             hhcCCCEEEecCCccccCHHHHHHHHHHH-HHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence            9 999999999997777776666665544 77766579999999999656689999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.4e-46  Score=295.73  Aligned_cols=171  Identities=20%  Similarity=0.257  Sum_probs=144.4

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQI   65 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~   65 (185)
                      ++++|+.+.|     +++.|++|+||++++||+++|+||||||||||+|+|        |.|.            ++..+
T Consensus         3 I~v~nl~k~y-----g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i   77 (238)
T d1vpla_           3 VVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI   77 (238)
T ss_dssp             EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred             EEEEeEEEEE-----CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhE
Confidence            5677777665     458899999999999999999999999999999999        3332            23455


Q ss_pred             CceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297          66 GCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI  120 (185)
Q Consensus        66 g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll  120 (185)
                      + |+||....+   +                     .++.+++.+++.+..++++++||+|||||++||+++ .+|+++|
T Consensus        78 ~-~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~ill  156 (238)
T d1vpla_          78 S-YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI  156 (238)
T ss_dssp             E-EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             e-EeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            6 999987332   2                     245566778899999999999999999999999999 9999999


Q ss_pred             EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |||||+|+|+.....+.+. ++.+++ .|.|||++||+ .++..+|||+++|++|+++++|++++
T Consensus       157 LDEPt~gLD~~~~~~i~~~-i~~~~~-~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e  219 (238)
T d1vpla_         157 LDEPTSGLDVLNAREVRKI-LKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE  219 (238)
T ss_dssp             EESTTTTCCHHHHHHHHHH-HHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred             ecCCCCCCCHHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999888888776666554 477776 59999999999 88889999999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.7e-46  Score=297.47  Aligned_cols=172  Identities=14%  Similarity=0.084  Sum_probs=144.3

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------   60 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------   60 (185)
                      .++++|+++.|     +...+++||||++++||+++|+||||||||||+|+|        |.|.                
T Consensus         2 ~Lev~nl~k~y-----g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~   76 (258)
T d1b0ua_           2 KLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL   76 (258)
T ss_dssp             CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSE
T ss_pred             eEEEEEEEEEE-----CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhc
Confidence            47888888766     457799999999999999999999999999999999        3321                


Q ss_pred             ----------HHHhhCceecCCCCCcc-------------------------hhhHHHhhcCcccc-cccCcCccHHHHH
Q psy5297          61 ----------FLAQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADS-QYRGISTFMMEMK  104 (185)
Q Consensus        61 ----------~~~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~-~~~~~~~lS~g~~  104 (185)
                                ++.++| ||||++..++                         .+.++++.+++.+. .++.+++|||||+
T Consensus        77 ~~~~~~~~~~~r~~ig-~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~  155 (258)
T d1b0ua_          77 KVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ  155 (258)
T ss_dssp             EESCHHHHHHHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHH
T ss_pred             ccccHhHHHHHhcceE-EEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHH
Confidence                      234567 9999874333                         24456777888764 4778999999999


Q ss_pred             HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297         105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH  182 (185)
Q Consensus       105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~  182 (185)
                      ||++|||++ .+|+++|+||||+|+|+.....+.+.+ +.+++ .|.|||++||| .++..+|||+++|++|++++.|++
T Consensus       156 QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll-~~l~~-~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~  233 (258)
T d1b0ua_         156 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM-QQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP  233 (258)
T ss_dssp             HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhh-hhhcc-cCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            999999999 999999999998887777766666644 77877 59999999999 888899999999999999999988


Q ss_pred             CC
Q psy5297         183 TN  184 (185)
Q Consensus       183 ~~  184 (185)
                      ++
T Consensus       234 ~e  235 (258)
T d1b0ua_         234 EQ  235 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.6e-45  Score=294.51  Aligned_cols=172  Identities=16%  Similarity=0.070  Sum_probs=142.6

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------H
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------L   62 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~   62 (185)
                      .++++|++..|     ++..||+||||++++||+++|+||||||||||+|+|        |.|.+              .
T Consensus         4 iL~v~nlsk~y-----g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   78 (254)
T d1g6ha_           4 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH   78 (254)
T ss_dssp             EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             eEEEEEEEEEE-----CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHH
Confidence            67788887655     457799999999999999999999999999999999        33322              1


Q ss_pred             HhhCceecCCCCC---cch----------------------------------hhHHHhhcCcccccccCcCccHHHHHH
Q psy5297          63 AQIGCFVPCDSAT---ISV----------------------------------VDQIFTRVGAADSQYRGISTFMMEMKE  105 (185)
Q Consensus        63 ~~~g~~v~~~~~~---~~~----------------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q  105 (185)
                      ..++ |+||++..   +++                                  +.++++.+++.+..++++++|||||||
T Consensus        79 ~gi~-~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Q  157 (254)
T d1g6ha_          79 YGIV-RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK  157 (254)
T ss_dssp             HTEE-ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred             hcCC-ccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHH
Confidence            2245 99998732   222                                  234556678888889999999999999


Q ss_pred             HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297         106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT  183 (185)
Q Consensus       106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~  183 (185)
                      |++|||++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||| .++.++|||+++|++|+++++|+++
T Consensus       158 rv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i-~~l~~-~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~  235 (254)
T d1g6ha_         158 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV-LELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE  235 (254)
T ss_dssp             HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESH
T ss_pred             HHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHH
Confidence            99999999 999999999998888777766666654 67776 69999999999 8999999999999999999999876


Q ss_pred             C
Q psy5297         184 N  184 (185)
Q Consensus       184 ~  184 (185)
                      +
T Consensus       236 e  236 (254)
T d1g6ha_         236 E  236 (254)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.8e-45  Score=288.17  Aligned_cols=154  Identities=21%  Similarity=0.225  Sum_probs=131.1

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCcc-----------
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATIS-----------   77 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~~-----------   77 (185)
                      ||||+++ +++++|+||||||||||+|+|        |.|.+           +.++| |+||++..++           
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig-~v~Q~~~l~~~ltV~enl~~~   94 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG-FVPQDYALFPHLSVYRNIAYG   94 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCB-CCCSSCCCCTTSCHHHHHHTT
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCce-eeccchhhcccchhhHhhhhh
Confidence            8999996 589999999999999999999        44433           23456 9999974333           


Q ss_pred             -----------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH
Q psy5297          78 -----------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA  145 (185)
Q Consensus        78 -----------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~  145 (185)
                                 .+.++++.+++.+..++++++||||||||++|||++ .+|+++||||||+|+|+.....+.+.+ ..+.
T Consensus        95 l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i-~~l~  173 (240)
T d2onka1          95 LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQ  173 (240)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH-HHHH
T ss_pred             hcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHH-HHHH
Confidence                       356778889999999999999999999999999999 999999999998887777766666654 6666


Q ss_pred             hcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         146 SNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       146 ~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      ++.|.|+|++||+ .++.++|||+++|++|++++.|++++
T Consensus       174 ~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~e  213 (240)
T d2onka1         174 REFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKE  213 (240)
T ss_dssp             HHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHH
Confidence            5469999999999 88999999999999999999998765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=282.32  Aligned_cols=177  Identities=12%  Similarity=0.102  Sum_probs=133.3

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|++..|-..  ...++|+||||++++|++++|+||||||||||+|+|        |.|             .++.
T Consensus        11 ~I~~~nvsf~Y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~   88 (251)
T d1jj7a_          11 LVQFQDVSFAYPNR--PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR   88 (251)
T ss_dssp             CEEEEEEEECCTTS--TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             eEEEEEEEEECCCC--CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHH
Confidence            47888887666321  235799999999999999999999999999999999        333             2345


Q ss_pred             hhCceecCCCCCcc--hhhHH-------------------------Hhhc--CcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          64 QIGCFVPCDSATIS--VVDQI-------------------------FTRV--GAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~~~~~-------------------------l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      +++ |+||++..++  +.+++                         ++.+  +++...++.+.+||||||||++|||++ 
T Consensus        89 ~i~-~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          89 QVA-AVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             HEE-EECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             Hhh-hccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence            667 9999984432  22211                         1122  334445677789999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV  185 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~~  185 (185)
                      .+|+++||||||+++|+.....+.+.+ ..+.++.++|+|++||+....+.|||+++|++|+|++.|+++++
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l-~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eL  238 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLL-YESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL  238 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHH-HTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHH
T ss_pred             cCCcEEEecCcCcccChhhHHHHHHHH-HHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999996665554444343333 44444458999999999656678999999999999999988753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=2.1e-43  Score=280.28  Aligned_cols=171  Identities=18%  Similarity=0.168  Sum_probs=133.1

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~   64 (185)
                      ++++|++..|   .+ .+++|+||||++++|++++|+||||||||||+|+|        |.|.+             +.+
T Consensus         2 le~knvsf~Y---~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   77 (242)
T d1mv5a_           2 LSARHVDFAY---DD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ   77 (242)
T ss_dssp             EEEEEEEECS---SS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred             EEEEEEEEEC---CC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhh
Confidence            6777777655   22 35799999999999999999999999999999999        55433             345


Q ss_pred             hCceecCCCCCcc--hhhH----------------HHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          65 IGCFVPCDSATIS--VVDQ----------------IFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~~~~----------------~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      ++ ||||++..++  +.++                .++..++.           ....+...+||||||||++||||+ .
T Consensus        78 i~-~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~  156 (242)
T d1mv5a_          78 IG-FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR  156 (242)
T ss_dssp             CC-EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             eE-EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence            66 9999984333  2221                22222221           123345568999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+.+.+ +.+.+  ++|+|++||+.+....|||+++|++|++++.|++++
T Consensus       157 ~p~ililDEpts~LD~~~~~~i~~~l-~~l~~--~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~e  223 (242)
T d1mv5a_         157 NPKILMLDEATASLDSESESMVQKAL-DSLMK--GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNE  223 (242)
T ss_dssp             CCSEEEEECCSCSSCSSSCCHHHHHH-HHHHT--TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHH
T ss_pred             CCCEEEecCCccccCHHHHHHHHHHH-HHHcC--CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999988877777655 66654  899999999955556799999999999999998765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-43  Score=280.36  Aligned_cols=159  Identities=11%  Similarity=0.070  Sum_probs=130.5

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH-------------HHhhCceecCCCC---Ccc--
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF-------------LAQIGCFVPCDSA---TIS--   77 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~-------------~~~~g~~v~~~~~---~~~--   77 (185)
                      +++++||||+|++||+++|+||||||||||+|+|       |.|.+             ..+.+ |+++...   ..+  
T Consensus        12 ~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~v~   90 (231)
T d1l7vc_          12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRA-YLSQQQTPPFATPVW   90 (231)
T ss_dssp             TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEE-EECSCCCCCSSCBHH
T ss_pred             CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhce-eeeccccCCccccHH
Confidence            5689999999999999999999999999999999       33211             12233 7776541   111  


Q ss_pred             --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C-------CCeEEEEeCCCCCCCcCChhH
Q psy5297          78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T-------ENSLVIIDELGRGTSTFDGFG  135 (185)
Q Consensus        78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~-------~p~llllDEP~~g~~~~d~~~  135 (185)
                                    .++++++.+++.+..++++++||||||||++||+++ +       +|+++||||||+|+|+.....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~  170 (231)
T d1l7vc_          91 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA  170 (231)
T ss_dssp             HHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred             HHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHH
Confidence                          355677788999999999999999999999999998 5       679999999988877766555


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297         136 MACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       136 ~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +.+ +++.+++ .|.|||++||+ .++.++|||+++|++|++++.|++++
T Consensus       171 i~~-~i~~l~~-~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~e  218 (231)
T d1l7vc_         171 LDK-ILSALCQ-QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE  218 (231)
T ss_dssp             HHH-HHHHHHH-TTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHH
T ss_pred             HHH-HHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHH
Confidence            554 3577776 69999999999 88999999999999999999998765

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.5e-42  Score=276.95  Aligned_cols=173  Identities=14%  Similarity=0.106  Sum_probs=132.1

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|++..|   .+...++|+||||++++|++++|+||||||||||+++|        |.|             .++.
T Consensus        13 ~I~~~nvsf~Y---~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~   89 (253)
T d3b60a1          13 DLEFRNVTFTY---PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN   89 (253)
T ss_dssp             CEEEEEEEECS---SSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred             EEEEEEEEEEe---CCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence            47777776555   23345799999999999999999999999999999999        333             2345


Q ss_pred             hhCceecCCCCCcc--h----------------hhHHHhhc-----------CcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297          64 QIGCFVPCDSATIS--V----------------VDQIFTRV-----------GAADSQYRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~----------------~~~~l~~~-----------~l~~~~~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      +++ |+||++..+.  +                +.++++..           |++....+.+.+||||||||++|||++ 
T Consensus        90 ~i~-~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~  168 (253)
T d3b60a1          90 QVA-LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL  168 (253)
T ss_dssp             TEE-EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred             eEE-EEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence            666 9999884433  1                12222222           233445567789999999999999999 


Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      .+|+++||||||+++|+.....+.+.+ ..+.+  ++|+|++||+.+..+.||++++|++|+|++.|++++
T Consensus       169 ~~p~ililDEpts~LD~~~~~~i~~~l-~~l~~--~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~e  236 (253)
T d3b60a1         169 RDSPILILDEATSALDTESERAIQAAL-DELQK--NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE  236 (253)
T ss_dssp             HCCSEEEEETTTSSCCHHHHHHHHHHH-HHHHT--TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred             cCCCEEEeccccccCCHHHHHHHHHHH-HHhcc--CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999999996666655544444433 55543  899999999955567899999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.7e-42  Score=272.16  Aligned_cols=172  Identities=13%  Similarity=0.120  Sum_probs=131.0

Q ss_pred             EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297           6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ   64 (185)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~   64 (185)
                      ++++|++..|   .++.+++|+||||++++|++++|+||||||||||+|+|        |.|             .++.+
T Consensus         2 I~~~nvsf~Y---~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~   78 (241)
T d2pmka1           2 ITFRNIRFRY---KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ   78 (241)
T ss_dssp             EEEEEEEEES---STTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             eEEEEEEEEe---CCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhce
Confidence            4566665444   44557899999999999999999999999999999999        333             23566


Q ss_pred             hCceecCCCCCcc--hhhHH---------------HhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297          65 IGCFVPCDSATIS--VVDQI---------------FTRVG-----------AADSQYRGISTFMMEMKETATVIKKC-TE  115 (185)
Q Consensus        65 ~g~~v~~~~~~~~--~~~~~---------------l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l-~~  115 (185)
                      ++ ||||++..++  +.+++               ++..+           .+........+||||||||++|||++ .+
T Consensus        79 i~-~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~  157 (241)
T d2pmka1          79 VG-VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  157 (241)
T ss_dssp             EE-EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             EE-EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcc
Confidence            77 9999984433  22222               22222           22234566789999999999999999 99


Q ss_pred             CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      |+++||||||+++|+.....+.+.+ ..+.+  ++|+|++||+.+..+.||++++|++|+|++.|++++
T Consensus       158 p~ililDEpts~LD~~~~~~i~~~l-~~l~~--~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~e  223 (241)
T d2pmka1         158 PKILIFDEATSALDYESEHVIMRNM-HKICK--GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKE  223 (241)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHH-HHHHT--TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHH
T ss_pred             cchhhhhCCccccCHHHHHHHHHHH-HHHhC--CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            9999999996666665555444433 55543  899999999955567899999999999999998865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.6e-41  Score=269.82  Aligned_cols=173  Identities=18%  Similarity=0.142  Sum_probs=130.4

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA   63 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~   63 (185)
                      .++++|+...|   .++..++|+||||++++|++++|+||||||||||+|+|        |.|             .++.
T Consensus        16 ~I~~~nvsf~Y---~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~   92 (255)
T d2hyda1          16 RIDIDHVSFQY---NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN   92 (255)
T ss_dssp             CEEEEEEEECS---CSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             EEEEEEEEEEe---CCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence            47777776555   33446799999999999999999999999999999999        332             3456


Q ss_pred             hhCceecCCCCCcc--hhh---------------HHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-C
Q psy5297          64 QIGCFVPCDSATIS--VVD---------------QIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-T  114 (185)
Q Consensus        64 ~~g~~v~~~~~~~~--~~~---------------~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~  114 (185)
                      +++ ||||++..++  +.+               ++++..++.           ........+||||||||++|||++ .
T Consensus        93 ~i~-~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~  171 (255)
T d2hyda1          93 QIG-LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  171 (255)
T ss_dssp             TEE-EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             eee-eeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            677 9999984333  222               233333332           223345668999999999999999 9


Q ss_pred             CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                      +|+++||||||+++|+.....+.+.+ ..+.  .+.|+|++||+.+....||++++|++|++++.|++++
T Consensus       172 ~p~ililDEpts~LD~~t~~~i~~~l-~~l~--~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~e  238 (255)
T d2hyda1         172 NPPILILDEATSALDLESESIIQEAL-DVLS--KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRE  238 (255)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHH-HHHT--TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHH-HHHh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999996666555444443333 4444  3789999999955667899999999999999998865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.4e-42  Score=277.09  Aligned_cols=161  Identities=12%  Similarity=0.067  Sum_probs=120.9

Q ss_pred             CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCcc--hhhH---------
Q psy5297          21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATIS--VVDQ---------   81 (185)
Q Consensus        21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~~--~~~~---------   81 (185)
                      .+++||+||||++++|++++|+||||||||||+|+|        |.|.+.++++ |+||.+..++  +.++         
T Consensus        47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~-~v~Q~~~l~~~tv~eni~~~~~~~~  125 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVS-FCSQFSWIMPGTIKENIIFGVSYDE  125 (281)
T ss_dssp             TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEE-EECSSCCCCSEEHHHHHTTTSCCCH
T ss_pred             CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEE-EEeccccccCceeeccccccccccc
Confidence            347899999999999999999999999999999999        5566666777 9999885443  2222         


Q ss_pred             -----HHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297          82 -----IFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAREL  144 (185)
Q Consensus        82 -----~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l  144 (185)
                           +++...+           .....+...+||||||||++|||++ .+|+++||||||+++|+.....+.+.++..+
T Consensus       126 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~  205 (281)
T d1r0wa_         126 YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL  205 (281)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC
T ss_pred             hHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh
Confidence                 2222221           1123455678999999999999999 9999999999955554433222222211211


Q ss_pred             HhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297         145 ASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN  184 (185)
Q Consensus       145 ~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~  184 (185)
                       . .+.|+|++||+.+..+.|||+++|++|++++.|++++
T Consensus       206 -~-~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~e  243 (281)
T d1r0wa_         206 -M-ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSE  243 (281)
T ss_dssp             -T-TTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHH
T ss_pred             -h-CCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHH
Confidence             2 4789999999966678899999999999999998865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.8e-37  Score=238.56  Aligned_cols=157  Identities=13%  Similarity=0.128  Sum_probs=117.2

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhCce
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIGCF   68 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g~~   68 (185)
                      .++++|++..|      .+++|+|+||++++|++++|+||||||||||+|+|        |.|.+        ..+++ |
T Consensus         2 ~lev~~ls~~y------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~-~   74 (200)
T d1sgwa_           2 KLEIRDLSVGY------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF-F   74 (200)
T ss_dssp             EEEEEEEEEES------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEE-E
T ss_pred             eEEEEEEEEEe------CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEE-E
Confidence            57888887655      24799999999999999999999999999999999        44433        23444 8


Q ss_pred             ecCCCCC---cc-------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297          69 VPCDSAT---IS-------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG  125 (185)
Q Consensus        69 v~~~~~~---~~-------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~  125 (185)
                      +||....   ++                   .+.+.++.+++.+ .++++++||+|||||++||+++ .+|+++||||||
T Consensus        75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt  153 (200)
T d1sgwa_          75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  153 (200)
T ss_dssp             ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             EeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            8887522   22                   1233445555543 4577899999999999999999 999999999999


Q ss_pred             CCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceee
Q psy5297         126 RGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN  173 (185)
Q Consensus       126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~  173 (185)
                      +|+|+.....+.+.+.+..++ .+.++|.++|+.   .+||++.+|++
T Consensus       154 ~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l---~~~D~~~~l~~  197 (200)
T d1sgwa_         154 VAIDEDSKHKVLKSILEILKE-KGIVIISSREEL---SYCDVNENLHK  197 (200)
T ss_dssp             TTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC---TTSSEEEEGGG
T ss_pred             cccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh---hhcchhhheee
Confidence            998888877777766444443 455555555543   47999888764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=2.3e-32  Score=215.47  Aligned_cols=176  Identities=43%  Similarity=0.699  Sum_probs=142.6

Q ss_pred             CCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhH
Q psy5297           2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQ   81 (185)
Q Consensus         2 ~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~   81 (185)
                      +++.+++++++||+++.-.+.++|.||++++- .+.++.|+|||+|||||+||.+|.+.+++|+|+|||++...+++++.
T Consensus         8 ~~~~l~i~~~rHPlle~~~~~~~VpNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~   86 (234)
T d1wb9a2           8 DKPGIRITEGRHPVVEQVLNEPFIANPLNLSP-QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR   86 (234)
T ss_dssp             SSSCEEEEEECCTTHHHHCSSCCCCEEEEECS-SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE
T ss_pred             CCCcEEEEEeECCEEEcccCCCccceeEEECC-CceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchh
Confidence            45679999999999864334578999999984 45899999999999999999999999999999999999999999999


Q ss_pred             HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297          82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI  161 (185)
Q Consensus        82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~  161 (185)
                      ++.+++..+......|+|+.++++...+.+...+.+|+|+||+++||++.|+.++.+.+++++..+.+..++++||+.++
T Consensus        87 I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l  166 (234)
T d1wb9a2          87 IFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL  166 (234)
T ss_dssp             EEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred             heeEEccCcccccchhHHHHHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence            99999999999999999999999999999988888999999999999999999999988888876457789999998766


Q ss_pred             HHhhccccceeeeeEEE
Q psy5297         162 ALLSRVIPTFRNVHESK  178 (185)
Q Consensus       162 ~~~~d~~~~l~~g~i~~  178 (185)
                      .....+...+++.++..
T Consensus       167 ~~~~~~~~~v~~~~~~~  183 (234)
T d1wb9a2         167 TQLPEKMEGVANVHLDA  183 (234)
T ss_dssp             GGHHHHSTTEEEEEEEE
T ss_pred             hhhhhcccceEEEEEEE
Confidence            66555555555555543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.97  E-value=9.1e-31  Score=204.95  Aligned_cols=167  Identities=44%  Similarity=0.781  Sum_probs=141.8

Q ss_pred             eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHh
Q psy5297           5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT   84 (185)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~   84 (185)
                      .+++++++||+++..  .++|.||++++   ++++.|+|||++||||+||.+|.+.+++|+|+|||++...+++++.++.
T Consensus         9 ~~~i~~~rHPlle~~--~~~VpNdi~~~---~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~   83 (224)
T d1ewqa2           9 RLQIRAGRHPVVERR--TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYT   83 (224)
T ss_dssp             SEEEEEECCTTGGGT--SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEE
T ss_pred             cEEEEeCcCCEEcCC--CCeecceEEeC---CcEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEE
Confidence            378999999998742  36899999985   4699999999999999999999999999999999999999999999999


Q ss_pred             hcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297          85 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus        85 ~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      +++..+......|+|+.++++...+.....+..|+|+||+++||++.|+.++.+.+++.+.+ .+..++++||+.++..+
T Consensus        84 ~~~~~d~~~~~~StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2          84 RIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL  162 (224)
T ss_dssp             ECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTC
T ss_pred             EECCCccccCCccHHHHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeechhhhhh
Confidence            99999999999999999999999999988888999999999999999999999999999987 68899999999888776


Q ss_pred             hccccceeeeeEEEE
Q psy5297         165 SRVIPTFRNVHESKY  179 (185)
Q Consensus       165 ~d~~~~l~~g~i~~~  179 (185)
                      ...  .+++.++...
T Consensus       163 ~~~--~~~~~~~~~~  175 (224)
T d1ewqa2         163 GLP--RLKNLHVAAR  175 (224)
T ss_dssp             CCT--TEEEEEEEEE
T ss_pred             hhc--ccceEEEEEE
Confidence            543  2444454443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.74  E-value=6.2e-19  Score=130.67  Aligned_cols=83  Identities=8%  Similarity=0.014  Sum_probs=63.5

Q ss_pred             CcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceee
Q psy5297          95 GISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN  173 (185)
Q Consensus        95 ~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~  173 (185)
                      ....+++|++++..+++++ .+|+++++|||..  ...+.......+.+.+.. .+.++|+++|+.....+|+++..+.+
T Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~-~~~~il~~~h~~~~~~~~~~i~~~~~  154 (178)
T d1ye8a1          78 QYFEELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPG  154 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTC-TTSEEEEECCSSCCSHHHHHHHTCTT
T ss_pred             chhhhhhhhhHHHHHHHHHhcCCCceeecCCCc--cchhhHHHHHHHHHHhcc-CCCEEEEEEccHHHHHhhceEEEEeC
Confidence            3446899999999999999 9999999999832  223334444545444543 68999999998667788999999999


Q ss_pred             eeEEEEe
Q psy5297         174 VHESKYL  180 (185)
Q Consensus       174 g~i~~~~  180 (185)
                      |+++.-.
T Consensus       155 ~~i~~v~  161 (178)
T d1ye8a1         155 AVLIELT  161 (178)
T ss_dssp             CEEEECC
T ss_pred             CEEEEEC
Confidence            9986543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=3.5e-12  Score=101.34  Aligned_cols=72  Identities=11%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             CcCccHHHHHHHHHHHHh----C-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecChhHHHHhhcc
Q psy5297          95 GISTFMMEMKETATVIKK----C-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHFHEIALLSRV  167 (185)
Q Consensus        95 ~~~~lS~g~~q~~~ia~~----l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~~~~~~~~d~  167 (185)
                      ..+.+|.|+++...++..    . ..++++++|||-++   +++......+  ++...  .+..+|++||...+.+.+|+
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~---Lhp~~~~~l~~~l~~~~--~~~QviitTHsp~~~~~~d~  290 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP---LDDYNAERFKRLLKENS--KHTQFIVITHNKIVMEAADL  290 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS---CCHHHHHHHHHHHHHHT--TTSEEEEECCCTTGGGGCSE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhcccc---CCHHHHHHHHHHHHHhc--cCCEEEEEECCHHHHHhccc
Confidence            456789999998765432    3 67899999999555   5545444432  23333  36789999999888888898


Q ss_pred             ccce
Q psy5297         168 IPTF  171 (185)
Q Consensus       168 ~~~l  171 (185)
                      ++.+
T Consensus       291 ~~~v  294 (308)
T d1e69a_         291 LHGV  294 (308)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=4.2e-09  Score=86.03  Aligned_cols=75  Identities=9%  Similarity=0.023  Sum_probs=52.2

Q ss_pred             CcCccHHHHHHHHHHHHh----C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297          95 GISTFMMEMKETATVIKK----C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP  169 (185)
Q Consensus        95 ~~~~lS~g~~q~~~ia~~----l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~  169 (185)
                      +...+|||||.++++|-.    . ..+++++||||++++|+.-...+... +..+.. .+..+|++||+..+...||+.+
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~~~~-~~~Q~I~iTH~~~~~~~ad~~~  406 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRRHRN-PDLQFIVISLKNTMFEKSDALV  406 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHHHCB-TTBEEEEECSCHHHHTTCSEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhC-CCCEEEEEeCCHHHHHhcccEE
Confidence            446789999998776533    2 56779999999555544333333332 244433 4567999999999999999987


Q ss_pred             ce
Q psy5297         170 TF  171 (185)
Q Consensus       170 ~l  171 (185)
                      .+
T Consensus       407 ~V  408 (427)
T d1w1wa_         407 GV  408 (427)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=2.7e-08  Score=72.52  Aligned_cols=33  Identities=24%  Similarity=0.191  Sum_probs=27.4

Q ss_pred             eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      +.+.++++.+ .+++|+|||||||||+|.+|..+
T Consensus        15 ~~~~~i~f~~-~~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          15 FFARTFDLDE-LVTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             EEEEEECHHH-HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred             EeeEEEEcCC-CeEEEECCCCCCHHHHHHHHHHH
Confidence            4667777765 49999999999999999999543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=98.06  E-value=7.5e-06  Score=61.67  Aligned_cols=123  Identities=11%  Similarity=0.036  Sum_probs=63.3

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCcc----------cccccCcCccHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAA----------DSQYRGISTFMM  101 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~lS~  101 (185)
                      +++|.++.|.||.|+|||||...+..-.... ....|+..+..... +.+.+..++..          ...+........
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ-LLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL  101 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHH-HHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHH-HHHHHHHcCCChHHHhhcCceEEEEeecchhhH
Confidence            6789999999999999999988774322211 11224443321111 11122222221          111111111111


Q ss_pred             HHHHHHHHHHhC--CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecC
Q psy5297         102 EMKETATVIKKC--TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATH  157 (185)
Q Consensus       102 g~~q~~~ia~~l--~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH  157 (185)
                      . ...-.+...+  .+|+++++|-...-....+.......+  +..+.++.+.+++++.|
T Consensus       102 ~-~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~  160 (242)
T d1tf7a2         102 E-DHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNT  160 (242)
T ss_dssp             H-HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             H-HHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence            1 1112233333  789999999875545555544444333  22333347899888877

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.96  E-value=1.1e-05  Score=62.10  Aligned_cols=34  Identities=26%  Similarity=0.214  Sum_probs=28.1

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      -|+++..-+.+|++++|.|+.|+|||||+..++.
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4555545578999999999999999999888853

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.95  E-value=6.3e-05  Score=56.41  Aligned_cols=94  Identities=15%  Similarity=0.203  Sum_probs=52.9

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHHHHH---hhCceecCCCCCcchhh---HHHhhcCcccccccCcCccHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIGCFVPCDSATISVVD---QIFTRVGAADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~~~~---~~g~~v~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~lS~g~~q~~~  108 (185)
                      .-.++.++||+|+||||.+-=|+. .+..   +++ ++..+.....-.+   .+.+.+++.-..-....++..-.++-+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~-~~~~~g~kV~-lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~   88 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY-FYKKKGFKVG-LVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE   88 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH-HHHHTTCCEE-EEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-HHHHCCCceE-EEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHH
Confidence            457899999999999998766653 2221   223 5666654444333   3445566654444445566555544333


Q ss_pred             HHHhCCCCeEEEEeCCCCCCCcCCh
Q psy5297         109 VIKKCTENSLVIIDELGRGTSTFDG  133 (185)
Q Consensus       109 ia~~l~~p~llllDEP~~g~~~~d~  133 (185)
                      .++ ..+.+++|.|  |+|-++.|.
T Consensus        89 ~~~-~~~~d~IlID--TaGr~~~~~  110 (211)
T d1j8yf2          89 KFL-SEKMEIIIVD--TAGRHGYGE  110 (211)
T ss_dssp             HHH-HTTCSEEEEE--CCCSCCTTC
T ss_pred             Hhh-ccCCceEEEe--cCCcCccch
Confidence            332 2788999999  667676664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2.2e-06  Score=60.87  Aligned_cols=20  Identities=15%  Similarity=0.135  Sum_probs=18.7

Q ss_pred             eEEEEccCCCcHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +++|+|++|||||||++.|-
T Consensus         4 vi~itG~~GSGKTTL~~~L~   23 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLI   23 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            78999999999999999994

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=2.3e-06  Score=62.34  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      |.+++|+||+||||||+++.|
T Consensus         2 G~iivl~GpsG~GK~tl~~~L   22 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCL   22 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            889999999999999999987

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.91  E-value=1.1e-05  Score=66.28  Aligned_cols=105  Identities=18%  Similarity=0.120  Sum_probs=58.4

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      .++.++.+.||.||||||+|..+-.-......-.+.-.++..+.. ..+. .....   ...-.+|..+      +..++
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~-~~~~-q~~v~---~~~~~~~~~~------l~~~l  224 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI-DGIG-QTQVN---PRVDMTFARG------LRAIL  224 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC-SSSE-EEECB---GGGTBCHHHH------HHHHG
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCccccc-CCCC-eeeec---CCcCCCHHHH------HHHHH
Confidence            467889999999999999999983211111111011222222110 0000 01111   1111234333      44567


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                       .+|+++++.|.      -|.......+  ..+. .|..|+-+-|-
T Consensus       225 R~dPDvi~igEi------Rd~~ta~~a~--~aa~-tGhlV~tTlHa  261 (401)
T d1p9ra_         225 RQDPDVVMVGEI------RDLETAQIAV--QASL-TGHLVMSTLHT  261 (401)
T ss_dssp             GGCCSEEEESCC------CSHHHHHHHH--HHHH-TTCEEEEEECC
T ss_pred             hhcCCEEEecCc------CChHHHHHHH--HHHh-cCCeEEEEecc
Confidence             99999999999      5655555544  3344 69999999994

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=3.6e-06  Score=68.07  Aligned_cols=27  Identities=37%  Similarity=0.607  Sum_probs=22.7

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +++..+.+.+|+|||||||||+|.+|.
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            344556799999999999999999984

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.89  E-value=0.0001  Score=54.98  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=56.7

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHHHHH--hhCceecCCCCCcchhh---HHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSVFLA--QIGCFVPCDSATISVVD---QIFTRVGAADSQYRGISTFMMEMKETATV  109 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~~~~--~~g~~v~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~lS~g~~q~~~i  109 (185)
                      +..++.++||||+||||.+-=|+......  +++ .+..+.......+   .+.+.+++.-..-....++....+.-..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~-lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~   87 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL-LVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK   87 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE-EEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHH
Confidence            45789999999999999877775432211  122 5555554443333   33455555433334444554444333333


Q ss_pred             HHhCCCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297         110 IKKCTENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus       110 a~~l~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                      ++. .+.+++|.|=|  |-++.|...+.+
T Consensus        88 ~~~-~~~d~vlIDTa--Gr~~~d~~~~~e  113 (207)
T d1ls1a2          88 ARL-EARDLILVDTA--GRLQIDEPLMGE  113 (207)
T ss_dssp             HHH-HTCCEEEEECC--CCSSCCHHHHHH
T ss_pred             Hhh-ccCcceeeccc--ccchhhhhhHHH
Confidence            332 67788888855  556666555544

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.80  E-value=5.6e-06  Score=58.92  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .|++++|.||.||||||+.+.|.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La   25 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALA   25 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998883

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=5.9e-06  Score=58.69  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=22.8

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++.+++|.||+||||||+.+.|..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999999954

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=4.8e-06  Score=59.35  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      +.+.|+||+|+|||||++.+....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            458899999999999999996544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.72  E-value=0.00014  Score=54.20  Aligned_cols=101  Identities=18%  Similarity=0.053  Sum_probs=56.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHHHH--HhhCceecCCCCCcchhh---HHHhhcCcccccccCcCccHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFL--AQIGCFVPCDSATISVVD---QIFTRVGAADSQYRGISTFMMEMKETAT  108 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~--~~~g~~v~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~lS~g~~q~~~  108 (185)
                      +++.+++++||+|+||||.+-=|+.....  .+++ ++..+.....-++   .+.+.+++.-.......++..--+....
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~-lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~   82 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM-FCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQ   82 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE-EECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHH
Confidence            35789999999999999987666542211  1223 5555554444333   3445556553333333344333333333


Q ss_pred             HHHhCCCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297         109 VIKKCTENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus       109 ia~~l~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                      .++. .+.+++|.|=|  |.++.|...+.+
T Consensus        83 ~~~~-~~~d~ilIDTa--Gr~~~d~~l~~e  109 (207)
T d1okkd2          83 AMKA-RGYDLLFVDTA--GRLHTKHNLMEE  109 (207)
T ss_dssp             HHHH-HTCSEEEECCC--CCCTTCHHHHHH
T ss_pred             HHHH-CCCCEEEcCcc--ccchhhHHHHHH
Confidence            3322 57799999955  566666554443

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.71  E-value=0.00023  Score=52.35  Aligned_cols=24  Identities=21%  Similarity=0.166  Sum_probs=21.8

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|+++.|.|++|+|||||.-.+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            679999999999999999997655

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=9.4e-05  Score=55.47  Aligned_cols=104  Identities=16%  Similarity=0.065  Sum_probs=59.3

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH--hhCceecCCCCCcchhh---HHHhhcCcccccccCcCccHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--QIGCFVPCDSATISVVD---QIFTRVGAADSQYRGISTFMMEMKE  105 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~--~~g~~v~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~lS~g~~q  105 (185)
                      +.-++-.+++++||||+||||.+-=|+.-....  +++ ++..+.....-.+   .+.+.+++.-.......++..-.+.
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~-lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~   84 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV-LAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD   84 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-EEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceE-EEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHH
Confidence            333455689999999999999876665322211  123 5555554444333   3345556543333334455444433


Q ss_pred             HHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297         106 TATVIKKCTENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus       106 ~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                      ....+.. .+.+++|+|=|  |-++.|...+.+
T Consensus        85 ~~~~~~~-~~~d~ilIDTa--Gr~~~d~~~~~e  114 (213)
T d1vmaa2          85 AVAHALA-RNKDVVIIDTA--GRLHTKKNLMEE  114 (213)
T ss_dssp             HHHHHHH-TTCSEEEEEEC--CCCSCHHHHHHH
T ss_pred             HHHHHHH-cCCCEEEEecc--ccccchHHHHHH
Confidence            3333332 67789999955  666777555544

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=9.7e-06  Score=57.89  Aligned_cols=20  Identities=25%  Similarity=0.295  Sum_probs=18.2

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+|++|||||||++-|
T Consensus         2 kii~I~G~~gSGKTTli~~l   21 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKW   21 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHH
Confidence            47899999999999999876

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.64  E-value=1.5e-05  Score=56.56  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=22.7

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+|-++.|+|+.||||||+-+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999999954

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.62  E-value=1.5e-05  Score=55.51  Aligned_cols=20  Identities=35%  Similarity=0.416  Sum_probs=18.2

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++.|.||.||||||+.+.|
T Consensus         3 klIii~G~pGsGKTTla~~L   22 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREF   22 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999876

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.61  E-value=1.5e-05  Score=63.68  Aligned_cols=97  Identities=23%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCccc----ccccCcCccHHHHHHHHHHHHh
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD----SQYRGISTFMMEMKETATVIKK  112 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~ia~~  112 (185)
                      .-+.|.||-||||||||+.+-.         ++|.+....+. ++-.+ +.+..    ..-......+..    -.+-.+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~---------~i~~~~rivti-Ed~~E-l~l~~~~~~~~~~~~~~~~~~----~ll~~~  231 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME---------FIPKEERIISI-EDTEE-IVFKHHKNYTQLFFGGNITSA----DCLKSC  231 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG---------GSCTTCCEEEE-ESSCC-CCCSSCSSEEEEECBTTBCHH----HHHHHH
T ss_pred             CCEEEEeeccccchHHHHHHhh---------hcccccceeec-cchhh-hhcccccccceeccccchhHH----HHHHHH
Confidence            4489999999999999998732         33332211110 00000 00000    000111122221    124456


Q ss_pred             C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC-eEEEecCh
Q psy5297         113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP-FTLFATHF  158 (185)
Q Consensus       113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~-~vii~tH~  158 (185)
                      + .+|+.+++.|-   -   +.+. .. +++.+..  |. .++-+.|-
T Consensus       232 lR~~pd~iivgEi---R---~~ea-~~-~l~a~~t--Gh~g~~tT~Ha  269 (323)
T d1g6oa_         232 LRMRPDRIILGEL---R---SSEA-YD-FYNVLCS--GHKGTLTTLHA  269 (323)
T ss_dssp             TTSCCSEEEESCC---C---STHH-HH-HHHHHHT--TCSCEEEEECC
T ss_pred             hccCCCcccCCcc---C---chhH-HH-HHHHHHh--cCCcEEEEECC
Confidence            7 99999999999   3   3332 33 3465543  65 47888894

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.0003  Score=53.47  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=26.4

Q ss_pred             eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++.++   + +|+++.|.|+.|+|||||+-.++.
T Consensus        20 d~li~G~---~-pg~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          20 DYVLPNM---V-AGTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             CEEETTE---E-TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHhCCc---c-CCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4677764   3 599999999999999999988754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.58  E-value=1.6e-05  Score=56.67  Aligned_cols=23  Identities=22%  Similarity=-0.000  Sum_probs=20.5

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++++|.|+.||||||+.+.|..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999944

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.58  E-value=1.7e-05  Score=56.11  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.+++.|.|+.||||||+.+.|..
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999944

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=1.6e-05  Score=56.52  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=19.9

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.++|+||.|||||||.+.|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999954

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.58  E-value=0.00049  Score=53.14  Aligned_cols=90  Identities=16%  Similarity=0.166  Sum_probs=52.7

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh-hCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      -++.|.++-+.||.|+|||||.-.+....-... ...|+..+.. ++  .++++.+|++...-......+.++.  +.++
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~-~~--~~~a~~~Gvd~d~i~~~~~~~~E~~--~~~~  127 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA-LD--PVYARALGVNTDELLVSQPDNGEQA--LEIM  127 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CC--HHHHHHTTCCGGGCEEECCSSHHHH--HHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCcc-CC--HHHHHHhCCCchhEEEEcCCCHHHH--HHHH
Confidence            357899999999999999999866632221111 1125555432 22  2467778876432111222334433  3344


Q ss_pred             HhC---CCCeEEEEeCCCC
Q psy5297         111 KKC---TENSLVIIDELGR  126 (185)
Q Consensus       111 ~~l---~~p~llllDEP~~  126 (185)
                      ..+   .+++++++|=.++
T Consensus       128 ~~l~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         128 ELLVRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             HHHHTTTCCSEEEEECTTT
T ss_pred             HHHHhcCCCcEEEEecccc
Confidence            443   4699999998855

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.7e-05  Score=59.15  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +|.+++|+||+|||||||++.|-
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~   23 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALL   23 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            48899999999999999998873

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00019  Score=53.68  Aligned_cols=99  Identities=15%  Similarity=0.027  Sum_probs=57.6

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHHHH--HhhCceecCCCCCcchh---hHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSVFL--AQIGCFVPCDSATISVV---DQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~~~--~~~g~~v~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      -.+++++||||+||||.+-=|+.-...  .+++ .+..+.....-+   ..+.+.+++.-.......++..-.++...-+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~-lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a   87 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM-LAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA   87 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEE-EECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHH
Confidence            368999999999999987666532211  1122 555555443333   3344566665444455555555444444433


Q ss_pred             HhCCCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297         111 KKCTENSLVIIDELGRGTSTFDGFGMAC  138 (185)
Q Consensus       111 ~~l~~p~llllDEP~~g~~~~d~~~~~~  138 (185)
                      +. .+.+++|+|=|  |-++.|...+.+
T Consensus        88 ~~-~~~d~ilIDTa--Gr~~~d~~~~~e  112 (211)
T d2qy9a2          88 KA-RNIDVLIADTA--GRLQNKSHLMEE  112 (211)
T ss_dssp             HH-TTCSEEEECCC--CCGGGHHHHHHH
T ss_pred             HH-cCCCEEEeccC--CCccccHHHHHH
Confidence            32 67899999955  555666544443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.55  E-value=2.2e-05  Score=55.68  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=21.8

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++-.++|+||.||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4677899999999999999999943

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.51  E-value=2.5e-05  Score=54.90  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+++|+||.||||||+.+.|..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998843

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00016  Score=55.57  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..-+.|.||.|+|||++.+.|..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            35588999999999999999964

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=2.7e-05  Score=56.20  Aligned_cols=21  Identities=19%  Similarity=0.238  Sum_probs=19.0

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++||.||.|||||||.+.|-.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999943

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.46  E-value=2.8e-05  Score=58.17  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=18.8

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|+||.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999998843

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=2.9e-05  Score=53.91  Aligned_cols=20  Identities=35%  Similarity=0.408  Sum_probs=18.1

Q ss_pred             eEEEEccCCCcHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .+.|+||.||||||+-|.|+
T Consensus         4 ~I~l~G~~GsGKSTvak~La   23 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            57889999999999999994

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00041  Score=53.48  Aligned_cols=87  Identities=11%  Similarity=0.081  Sum_probs=48.6

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETAT  108 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~  108 (185)
                      -++.|.++-|.||+|+|||||+-.+..-... .....|+..+...   -...++.+|++-  ..-..+  -+.++  .+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~---~~~~a~~~Gvd~d~v~~~~~--~~~E~--~~~  122 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL---DPIYARKLGVDIDNLLCSQP--DTGEQ--ALE  122 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHTTCCGGGCEEECC--SSHHH--HHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccccc---CHHHHHHhCCCHHHEEEecC--CCHHH--HHH
Confidence            4578999999999999999996555322211 1112355554422   223466677652  122222  22332  223


Q ss_pred             HHHhC---CCCeEEEEeCCC
Q psy5297         109 VIKKC---TENSLVIIDELG  125 (185)
Q Consensus       109 ia~~l---~~p~llllDEP~  125 (185)
                      ++..+   .+++++++|=-+
T Consensus       123 ~i~~l~~~~~~~liViDSi~  142 (263)
T d1u94a1         123 ICDALARSGAVDVIVVDSVA  142 (263)
T ss_dssp             HHHHHHHHTCCSEEEEECGG
T ss_pred             HHHHHHhcCCCCEEEEECcc
Confidence            33333   668899999763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=4.3e-05  Score=57.87  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=21.0

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +|+..+++|++|+|||||++.|
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L  115 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAI  115 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHhh
Confidence            4899999999999999999999

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=3e-05  Score=55.98  Aligned_cols=24  Identities=21%  Similarity=0.127  Sum_probs=21.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +|-++.|+|+.||||||+-|.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999954

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.32  E-value=5e-05  Score=53.50  Aligned_cols=19  Identities=32%  Similarity=0.352  Sum_probs=17.5

Q ss_pred             EEEEccCCCcHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG   57 (185)
                      ++|+||.||||||+.+.|.
T Consensus         7 I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7799999999999999994

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=5.8e-05  Score=54.94  Aligned_cols=18  Identities=33%  Similarity=0.685  Sum_probs=17.1

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+||+|||||||++.+
T Consensus         4 Ivl~GpsG~GK~tl~~~L   21 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKL   21 (186)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999987

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.27  E-value=7.2e-05  Score=53.36  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++++|.|+.||||||+.+.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999954

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=7.1e-05  Score=55.26  Aligned_cols=22  Identities=27%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             eEEEEccCCCcHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ++||.|+.||||||+.+.|...
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998553

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=7.4e-05  Score=54.26  Aligned_cols=20  Identities=10%  Similarity=0.154  Sum_probs=18.3

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.++|+||+|+|||||++.|
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L   23 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTL   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHH
Confidence            57899999999999999976

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=7.4e-05  Score=54.63  Aligned_cols=19  Identities=32%  Similarity=0.574  Sum_probs=17.3

Q ss_pred             EEEEccCCCcHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG   57 (185)
                      ++|+||+||||||+++.|-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~   21 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLF   21 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999873

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.00096  Score=51.48  Aligned_cols=92  Identities=13%  Similarity=0.112  Sum_probs=52.1

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHH-HHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI  110 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia  110 (185)
                      -++.|.++-+.||+|+|||||+-.+ ....-......|+..+.. +  -.+.++.+|++...--....-+.++  .+.++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~-~--~~e~a~~~GvD~d~il~~~~~~~E~--~~~~~  130 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA-L--DPDYAKKLGVDTDSLLVSQPDTGEQ--ALEIA  130 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC-C--CHHHHHHHTCCGGGCEEECCSSHHH--HHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc-C--CHHHHHHhCCCHHHeEEecCCCHHH--HHHHH
Confidence            5789999999999999999996444 322211111125555442 2  2334666676532111122233333  23344


Q ss_pred             HhC---CCCeEEEEeCCCCCC
Q psy5297         111 KKC---TENSLVIIDELGRGT  128 (185)
Q Consensus       111 ~~l---~~p~llllDEP~~g~  128 (185)
                      ..+   ..++++++|=-.+-.
T Consensus       131 ~~l~~~~~~~liIiDSi~al~  151 (269)
T d1mo6a1         131 DMLIRSGALDIVVIDSVAALV  151 (269)
T ss_dssp             HHHHHTTCEEEEEEECSTTCC
T ss_pred             HHHHhcCCCCEEEEecccccc
Confidence            443   568999999885433

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.14  E-value=0.0001  Score=53.54  Aligned_cols=19  Identities=32%  Similarity=0.413  Sum_probs=18.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.|
T Consensus        25 ~I~lvG~~n~GKSTLin~L   43 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSL   43 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHh
Confidence            3999999999999999999

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00012  Score=53.21  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++-.+++|+||.||||||+.+.|
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~L   28 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKL   28 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHH
Confidence            45678999999999999999999

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00012  Score=52.72  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=22.0

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|+++.|.||.|+|||||.-.+
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~l   43 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTL   43 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHH
Confidence            578999999999999999998776

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.09  E-value=5.1e-05  Score=57.63  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +|+..+++|++|+|||||++.|
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L  117 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAI  117 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHH
T ss_pred             ccceEEEECCCCccHHHHHHhh
Confidence            5788999999999999999999

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.09  E-value=0.00013  Score=52.88  Aligned_cols=19  Identities=32%  Similarity=0.211  Sum_probs=17.9

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++||+|+.||||||+.+.+
T Consensus         5 IIgitG~~gSGKstva~~l   23 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALL   23 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999987

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.07  E-value=9.8e-05  Score=53.80  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=21.8

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.++.++.|+||.||||||+.+.|
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~L   28 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKI   28 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHH
Confidence            356789999999999999999999

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00016  Score=52.05  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.1

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++-+++.++|+.||||||+.+.+
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l   34 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEH   34 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH
Confidence            45579999999999999998866

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.03  E-value=0.00019  Score=52.05  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=20.0

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +-.+++|+||.||||||+.+.|
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~L   26 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANI   26 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHH
Confidence            4468999999999999999999

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00017  Score=53.17  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=21.9

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +|.++++-|+-||||||+.+.|..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999999854

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.01  E-value=0.0002  Score=50.71  Aligned_cols=20  Identities=20%  Similarity=0.303  Sum_probs=18.3

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+.|+|||||++.+
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l   33 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHML   33 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            45889999999999999998

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00017  Score=49.87  Aligned_cols=19  Identities=26%  Similarity=0.350  Sum_probs=17.2

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.++|||||++.+
T Consensus         2 KI~liG~~nvGKSSLln~l   20 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHML   20 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3679999999999999987

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.99  E-value=0.00016  Score=51.50  Aligned_cols=21  Identities=19%  Similarity=0.137  Sum_probs=18.3

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.|+|+.||||||+-+.++.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999954

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00052  Score=52.24  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=19.2

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      -+.+.||.|+|||++.|.|+.
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            378999999999999999975

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.97  E-value=0.00018  Score=50.94  Aligned_cols=20  Identities=30%  Similarity=0.287  Sum_probs=17.8

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++|+|+.||||||+.|.|..
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999943

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.96  E-value=0.00024  Score=52.81  Aligned_cols=26  Identities=23%  Similarity=0.134  Sum_probs=23.3

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      -++|.++.++|.+||||||+.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999999854

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.0011  Score=50.62  Aligned_cols=20  Identities=30%  Similarity=0.426  Sum_probs=18.2

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.|.||.|+|||++.+.+..
T Consensus        41 iLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             eEEecCCCCCchHHHHHHHH
Confidence            88999999999999998854

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00023  Score=52.85  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=22.5

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+|.+++|-|+-||||||+.+.|..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999999855

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00095  Score=51.17  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=20.9

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ....-+.|.||.|+|||+|.+.+..
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHH
Confidence            4445588999999999999999854

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.92  E-value=0.00037  Score=53.79  Aligned_cols=118  Identities=13%  Similarity=0.030  Sum_probs=59.4

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHH---HHHhh--CceecCCC--CCcc---hhhHHHhhcCcccccccCcCccHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSV---FLAQI--GCFVPCDS--ATIS---VVDQIFTRVGAADSQYRGISTFMMEMK  104 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~---~~~~~--g~~v~~~~--~~~~---~~~~~l~~~~l~~~~~~~~~~lS~g~~  104 (185)
                      ...+++|.|.-|.|||||.+.+-.-.   .....  ..++.-..  ....   ....++...+..+..+.+...-.....
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV  122 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHH
Confidence            35789999999999999998763210   00000  01232211  1111   223333333333322222222222223


Q ss_pred             HHH-HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297         105 ETA-TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus       105 q~~-~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      ++. .+-..+ ..+.+++||..      .+...+     +.+.. .+..||++|-+..+...
T Consensus       123 ~~~~~~~~~L~~kr~LlVLDDv------~~~~~~-----~~~~~-~~srilvTTR~~~v~~~  172 (277)
T d2a5yb3         123 LKRMICNALIDRPNTLFVFDDV------VQEETI-----RWAQE-LRLRCLVTTRDVEISNA  172 (277)
T ss_dssp             HHHHHHHHHTTSTTEEEEEEEE------CCHHHH-----HHHHH-TTCEEEEEESBGGGGGG
T ss_pred             HHHHHHHHHhccCCeeEecchh------hHHhhh-----hhhcc-cCceEEEEeehHHHHHh
Confidence            333 344556 77889999976      332222     23333 47788888887655443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.00023  Score=52.42  Aligned_cols=19  Identities=26%  Similarity=0.165  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++||+|+.||||||+.+.+
T Consensus         4 iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999998877

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.88  E-value=0.00024  Score=50.70  Aligned_cols=19  Identities=32%  Similarity=0.333  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      -++|+|+.++|||||++.|
T Consensus         2 ~I~lvG~~nvGKSsLin~l   20 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRL   20 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999998

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.86  E-value=0.00031  Score=50.73  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.3

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|-.++|+||.||||||..+.|
T Consensus         1 p~~~riil~G~pGSGKsT~a~~L   23 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKL   23 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHH
Confidence            35667889999999999999999

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.85  E-value=0.0003  Score=53.07  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.4

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ....+.|.||.|+|||||.+.|..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999954

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.85  E-value=0.00027  Score=48.84  Aligned_cols=18  Identities=28%  Similarity=0.484  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         3 ivlvG~~~vGKSsLi~~l   20 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKL   20 (160)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            689999999999999987

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.84  E-value=0.00027  Score=49.98  Aligned_cols=20  Identities=30%  Similarity=0.318  Sum_probs=17.7

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++|+|+.||||||+-|.++.
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999954

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.83  E-value=0.00027  Score=51.07  Aligned_cols=19  Identities=26%  Similarity=0.349  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|.||.||||||+.+.|
T Consensus         5 ~I~i~GppGsGKsT~a~~L   23 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELI   23 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999999

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.82  E-value=0.00029  Score=48.95  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus         7 kI~ivG~~~vGKSSLi~~~   25 (169)
T d1upta_           7 RILILGLDGAGKTTILYRL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3889999999999999987

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.81  E-value=0.00031  Score=50.96  Aligned_cols=21  Identities=14%  Similarity=0.219  Sum_probs=19.1

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++++|..||||||+.+.|..
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00032  Score=50.69  Aligned_cols=19  Identities=32%  Similarity=0.286  Sum_probs=18.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|+||.||||||..+.|
T Consensus         3 iI~i~GppGSGKsT~a~~L   21 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARI   21 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.81  E-value=0.0063  Score=47.90  Aligned_cols=70  Identities=17%  Similarity=0.302  Sum_probs=42.0

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhCCCC
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTEN  116 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p  116 (185)
                      .++.+.||.|+|||.+.+.|+.-.- ++.. |+.               +...+...++++++....|....-|+   +|
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~-~~~~-~~~---------------~~~~~~~~~~~G~~e~~~~~~f~~a~---~~  183 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG-GKDK-YAT---------------VRFGEPLSGYNTDFNVFVDDIARAML---QH  183 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH-TTSC-CEE---------------EEBSCSSTTCBCCHHHHHHHHHHHHH---HC
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc-CCCC-eEE---------------EEhhHhhhcccchHHHHHHHHHHHHh---hc
Confidence            4566689999999999999964221 1111 110               11233334566666555554444443   48


Q ss_pred             eEEEEeCCCC
Q psy5297         117 SLVIIDELGR  126 (185)
Q Consensus       117 ~llllDEP~~  126 (185)
                      .+|++||.=+
T Consensus       184 ~ilf~DEid~  193 (321)
T d1w44a_         184 RVIVIDSLKN  193 (321)
T ss_dssp             SEEEEECCTT
T ss_pred             cEEEeehhhh
Confidence            8999999744

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00033  Score=51.72  Aligned_cols=19  Identities=32%  Similarity=0.282  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++||+|+.||||||..+.+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            7899999999999999876

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.00024  Score=51.01  Aligned_cols=18  Identities=28%  Similarity=0.217  Sum_probs=17.4

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.++|||||++.|
T Consensus         4 VaiiG~~nvGKSSLin~L   21 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVV   21 (185)
T ss_dssp             EEEESSTTSSHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            799999999999999998

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.78  E-value=0.0003  Score=52.27  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             eEEEEccCCCcHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      .+.|.||+|+||||+.++++.-
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00038  Score=51.73  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=22.1

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +|.++++-|+-||||||+.+.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            699999999999999999999943

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.77  E-value=0.00023  Score=51.54  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.-+++|-|+-||||||+++.|
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L   29 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHF   29 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHH
Confidence            3458999999999999999999

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00038  Score=55.29  Aligned_cols=27  Identities=33%  Similarity=0.449  Sum_probs=23.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      .+.-+++|+||.|||||||+..++...
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            446789999999999999999996543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.75  E-value=0.00038  Score=49.55  Aligned_cols=18  Identities=28%  Similarity=0.281  Sum_probs=17.1

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+||.||||||+.+.|
T Consensus         3 I~i~G~pGSGKsT~a~~L   20 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKI   20 (182)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            679999999999999999

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.0004  Score=49.14  Aligned_cols=19  Identities=32%  Similarity=0.364  Sum_probs=17.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.|
T Consensus         2 ~V~liG~~n~GKSsLi~~L   20 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKL   20 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999988

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00041  Score=50.33  Aligned_cols=19  Identities=21%  Similarity=0.529  Sum_probs=18.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.++|||||++.|
T Consensus         5 ~V~lvG~~n~GKTSLln~l   23 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLL   23 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.70  E-value=0.00041  Score=48.69  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=17.2

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l   22 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKF   22 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999987

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00025  Score=52.68  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             CceeEEEEccCCCcHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      ++++++|-|+-||||||+++.|.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~   23 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILK   23 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999999994

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00044  Score=49.00  Aligned_cols=19  Identities=32%  Similarity=0.455  Sum_probs=18.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|+|..++|||||++.|
T Consensus         7 ~I~iiG~~nvGKSSLin~L   25 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKL   25 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00045  Score=49.23  Aligned_cols=19  Identities=32%  Similarity=0.485  Sum_probs=18.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|+|+.|+|||||++.+
T Consensus         7 ~I~lvG~~~~GKSSLin~l   25 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNL   25 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7999999999999999987

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.67  E-value=0.00074  Score=50.19  Aligned_cols=99  Identities=10%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHHHHHHhhC-ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCe
Q psy5297          39 NLVTGPNMGGKSTYIRSIGVSVFLAQIG-CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENS  117 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~i~~~~~~g-~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~  117 (185)
                      +.|.||.|+|||-|+++++.-....... .|++....    ...+...+             ..++  ...+...+...+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------------~~~~--~~~~~~~~~~~d   99 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF----AQAMVEHL-------------KKGT--INEFRNMYKSVD   99 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH----HHHHHHHH-------------HHTC--HHHHHHHHHTCS
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH----HHHHHHHH-------------Hccc--hhhHHHHHhhcc
Confidence            6799999999999999997644322111 12222111    11111111             1111  111112235789


Q ss_pred             EEEEeCCCCCCCcCChh-HHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         118 LVIIDELGRGTSTFDGF-GMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       118 llllDEP~~g~~~~d~~-~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      ++++|+.-.=....+.+ .+.. ++..+.+ .|..+|++|..
T Consensus       100 ll~iDDi~~i~~~~~~~~~lf~-lin~~~~-~~~~iiits~~  139 (213)
T d1l8qa2         100 LLLLDDVQFLSGKERTQIEFFH-IFNTLYL-LEKQIILASDR  139 (213)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHH-HHHHHHH-TTCEEEEEESS
T ss_pred             chhhhhhhhhcCchHHHHHHHH-HHHHHhh-ccceEEEecCC
Confidence            99999982211111111 1222 3466665 68889988874

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00043  Score=51.04  Aligned_cols=25  Identities=20%  Similarity=0.138  Sum_probs=22.4

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -+++|+++.|.||.|+|||||.-.+
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~   54 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTL   54 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHH
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHH
Confidence            3689999999999999999998766

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.65  E-value=0.00045  Score=48.77  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=18.0

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      =.++|+|+.|||||||++.+
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl   35 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQF   35 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            45889999999999999987

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00048  Score=50.32  Aligned_cols=19  Identities=26%  Similarity=0.511  Sum_probs=18.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|.||.||||||.-+.|
T Consensus         5 iI~I~GppGSGKgT~ak~L   23 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAM   23 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            8899999999999999999

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00044  Score=51.23  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=18.6

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.|.||+|+||||+.+++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            78999999999999999964

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00049  Score=49.18  Aligned_cols=19  Identities=32%  Similarity=0.293  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus        10 kV~iiG~~~~GKSTLin~l   28 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAI   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999887

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.62  E-value=0.00053  Score=49.08  Aligned_cols=19  Identities=26%  Similarity=0.198  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+||.||||||+.+.|
T Consensus         2 ~I~i~G~pGSGKsT~a~~L   20 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRI   20 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3679999999999999999

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.61  E-value=0.00046  Score=51.42  Aligned_cols=24  Identities=17%  Similarity=0.170  Sum_probs=21.8

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|+++.|.||.|+|||||.-.+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            688999999999999999997655

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00059  Score=51.08  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.8

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ..+.|.||.|+||||+.++++.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999965

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.57  E-value=0.00056  Score=48.09  Aligned_cols=18  Identities=28%  Similarity=0.519  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         5 i~i~G~~~~GKTsLl~~l   22 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVI   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678999999999999887

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00068  Score=47.14  Aligned_cols=19  Identities=21%  Similarity=0.415  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.++|||||++.|
T Consensus         3 kI~lvG~~nvGKSsLin~l   21 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNAL   21 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00062  Score=48.55  Aligned_cols=19  Identities=26%  Similarity=0.322  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+||.||||||..+.|
T Consensus         2 ~I~i~G~pGSGKsT~~~~L   20 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFI   20 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3678999999999999999

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.00042  Score=49.44  Aligned_cols=18  Identities=22%  Similarity=0.287  Sum_probs=17.4

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.++|||||++.|
T Consensus         4 VaivG~~nvGKSTLin~L   21 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAM   21 (180)
T ss_dssp             EEEECCGGGCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            799999999999999999

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.53  E-value=0.00083  Score=49.25  Aligned_cols=19  Identities=37%  Similarity=0.473  Sum_probs=17.5

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      +++|-||.||||||.-+.|
T Consensus         5 ~IaIdGp~GsGKgT~ak~L   23 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKII   23 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4678899999999999999

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00068  Score=49.43  Aligned_cols=19  Identities=21%  Similarity=0.197  Sum_probs=17.7

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      -++|+|+.|+|||||++.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l   20 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRL   20 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999988

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.011  Score=43.25  Aligned_cols=111  Identities=19%  Similarity=0.248  Sum_probs=57.8

Q ss_pred             eEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcch----hhHHHhhcCcccccccCcCccHHHHHHHHH-HHHh
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISV----VDQIFTRVGAADSQYRGISTFMMEMKETAT-VIKK  112 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~----~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~-ia~~  112 (185)
                      -..|+||.|.|||++..-+..-....++    |..-....+    ...+++  |         .++-|+..+|+. +...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~~~~v----p~~L~~~~i~~ld~~~LiA--g---------~~~rG~~E~rl~~il~e  109 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRIINGEV----PEGLKGRRVLALDMGALVA--G---------AKYRGEFEERLKGVLND  109 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTCS----CGGGTTCEEEEECHHHHHT--T---------TCSHHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHHhCCC----CHHHcCceEEEeeHHHHhc--c---------CCccHHHHHHHHHHHHH
Confidence            4689999999999999988765443222    222111111    112221  1         133445555543 4433


Q ss_pred             C--CC-CeEEEEeCCCCCCCcC--C-hhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297         113 C--TE-NSLVIIDELGRGTSTF--D-GFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus       113 l--~~-p~llllDEP~~g~~~~--d-~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                      +  .+ +-+|++||.-.=+..-  + ...+...+.-.+.+ ....+|.+|...+..++
T Consensus       110 ~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r-g~l~~IgatT~eey~~~  166 (195)
T d1jbka_         110 LAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEYRQY  166 (195)
T ss_dssp             HHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-TSCCEEEEECHHHHHHH
T ss_pred             HhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC-CCceEEecCCHHHHHHH
Confidence            3  33 4588999984422110  0 11133444344554 46788888876554443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00086  Score=49.72  Aligned_cols=25  Identities=12%  Similarity=0.141  Sum_probs=22.7

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -+++|+++.|.||.|+|||||.-.+
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~   57 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTL   57 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHH
Confidence            4789999999999999999997766

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.00096  Score=47.47  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=23.5

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++|.+++|.|+=|||||||.|.+..
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHh
Confidence            36899999999999999999998854

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.46  E-value=0.00079  Score=49.51  Aligned_cols=25  Identities=16%  Similarity=0.072  Sum_probs=22.8

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +++|+++.|.|+.|+|||||.-.+.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            6789999999999999999988774

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.45  E-value=0.00075  Score=50.43  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+.++.|.||.|+|||||++.+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~   49 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIG   49 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHH
Confidence            5678999999999999999876

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.44  E-value=0.00079  Score=48.91  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=18.9

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++|-|+-||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999954

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00074  Score=53.17  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=20.0

Q ss_pred             eEEEEccCCCcHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ++||.|+.||||||+.+.|-..
T Consensus        82 iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHH
Confidence            8999999999999999999543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00039  Score=49.23  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=18.5

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+.++|||||++.|
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L   36 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTL   36 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            45999999999999999999

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00083  Score=48.04  Aligned_cols=18  Identities=28%  Similarity=0.447  Sum_probs=17.0

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+||-||||||+.+.|
T Consensus         5 Ivl~G~pGSGKtT~a~~L   22 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNL   22 (180)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678899999999999999

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.41  E-value=0.00086  Score=47.83  Aligned_cols=18  Identities=33%  Similarity=0.440  Sum_probs=17.1

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+||.||||||+-+.|
T Consensus         3 I~i~G~pGsGKsT~a~~L   20 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKL   20 (181)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            688999999999999999

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.40  E-value=0.00037  Score=54.41  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=18.7

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVSVF   61 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i~~   61 (185)
                      -++||.|++||||||+.+.+..+.-
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4899999999999999999966543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.00086  Score=49.86  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=19.0

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.+.||.|+||||+.++++.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            488999999999999999865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.35  E-value=0.00089  Score=52.98  Aligned_cols=27  Identities=33%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      .+.-+++|+||-|||||||+..++...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999997643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.00094  Score=47.17  Aligned_cols=18  Identities=17%  Similarity=0.324  Sum_probs=16.8

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         5 i~~vG~~~vGKSsLi~~~   22 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRY   22 (175)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.31  E-value=0.00098  Score=47.03  Aligned_cols=18  Identities=22%  Similarity=0.412  Sum_probs=16.8

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         8 i~vvG~~~vGKTsLi~~l   25 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRY   25 (169)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.001  Score=46.76  Aligned_cols=18  Identities=28%  Similarity=0.285  Sum_probs=16.8

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         6 i~viG~~~vGKTsli~~l   23 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQL   23 (166)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999876

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.29  E-value=0.00094  Score=50.91  Aligned_cols=19  Identities=42%  Similarity=0.398  Sum_probs=17.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|..|+|||||++.|
T Consensus        34 ~I~LvG~tg~GKSSliN~i   52 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSI   52 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            4889999999999999998

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.29  E-value=0.0011  Score=48.07  Aligned_cols=19  Identities=26%  Similarity=0.249  Sum_probs=17.6

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+||.||||||+-+.|
T Consensus         8 rIiliG~PGSGKtT~a~~L   26 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRI   26 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            4778999999999999999

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.28  E-value=0.0057  Score=40.68  Aligned_cols=21  Identities=10%  Similarity=-0.072  Sum_probs=17.9

Q ss_pred             eCCceeEEEEccCCCcHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYI   53 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLl   53 (185)
                      +++|+.+.|.+|-|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            367999999999999999654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0011  Score=47.09  Aligned_cols=18  Identities=22%  Similarity=0.311  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         7 i~vvG~~~vGKTsLi~~~   24 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRF   24 (175)
T ss_dssp             EEEESSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.26  E-value=0.0011  Score=46.81  Aligned_cols=19  Identities=26%  Similarity=0.450  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l   36 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQL   36 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999877

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.23  E-value=0.00087  Score=47.80  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=17.3

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        19 KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          19 RILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999876

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0012  Score=46.37  Aligned_cols=18  Identities=28%  Similarity=0.289  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         5 i~vvG~~~vGKTSli~~l   22 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRF   22 (166)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999987

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0012  Score=48.77  Aligned_cols=20  Identities=20%  Similarity=0.293  Sum_probs=18.2

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.|.||.|+||||+.+++..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHH
Confidence            78999999999999999954

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0013  Score=46.14  Aligned_cols=18  Identities=33%  Similarity=0.427  Sum_probs=16.4

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         5 v~liG~~~vGKSsLi~rl   22 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRY   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0013  Score=51.20  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=19.3

Q ss_pred             eEEEEccCCCcHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ++||.|+.|||||||-+.|-..
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999999888443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.15  E-value=0.0013  Score=46.99  Aligned_cols=18  Identities=22%  Similarity=0.156  Sum_probs=17.4

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+-.||||||++.|
T Consensus         8 IaiiG~~naGKSTL~n~L   25 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVL   25 (179)
T ss_dssp             EEEEECTTSSHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHH
Confidence            899999999999999998

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.001  Score=49.58  Aligned_cols=21  Identities=33%  Similarity=0.313  Sum_probs=18.8

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.|.||.|+||||+.+.+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999964

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.01  Score=45.49  Aligned_cols=116  Identities=18%  Similarity=0.166  Sum_probs=57.1

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCccccc--ccCcCccHHHHHHHHHHHHhC-
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQ--YRGISTFMMEMKETATVIKKC-  113 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~lS~g~~q~~~ia~~l-  113 (185)
                      .-..|+||.|.|||++..-+..-....    -+|..-....++.     +.+....  .+..+++..-.+   .+...+ 
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~~~----~vp~~l~~~~i~~-----l~~~~liag~~~~g~~e~r~~---~i~~~~~  107 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIVQG----DVPEVMADCTIYS-----LDIGSLLAGTKYRGDFEKRFK---ALLKQLE  107 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT----CSCGGGTTCEEEE-----CCCC---CCCCCSSCHHHHHH---HHHHHHS
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHHhC----CcccccccceeEE-----eeechHhccCccchhHHHHHH---HHHHHhh
Confidence            346799999999999999887644332    2222211111111     1111111  122333322222   244444 


Q ss_pred             -CCCeEEEEeCCCCCCC----cCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297         114 -TENSLVIIDELGRGTS----TFDGFGMACSIARELASNRQPFTLFATHFHEIALLS  165 (185)
Q Consensus       114 -~~p~llllDEP~~g~~----~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~  165 (185)
                       ..+-++++||.-.=+.    .-....+...+.-.+.+ ....+|.+|...+..++.
T Consensus       108 ~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r-g~i~vIgatT~eey~~~~  163 (268)
T d1r6bx2         108 QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF  163 (268)
T ss_dssp             SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHHCCC
T ss_pred             ccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC-CCCeEEEeCCHHHHHHHH
Confidence             4456777999633221    11112334433223333 467888888876666643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0014  Score=46.14  Aligned_cols=19  Identities=26%  Similarity=0.149  Sum_probs=17.2

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|..|+|||||++.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~   25 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQF   25 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4889999999999999876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0015  Score=46.19  Aligned_cols=18  Identities=22%  Similarity=0.313  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         6 ivvvG~~~vGKTsli~r~   23 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQF   23 (173)
T ss_dssp             EEEESSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.07  E-value=0.0036  Score=49.12  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVSVF   61 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i~~   61 (185)
                      ...+.++||+|+|||.+.|.|+...+
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHhc
Confidence            34678899999999999999998764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.05  E-value=0.0042  Score=44.77  Aligned_cols=32  Identities=22%  Similarity=0.006  Sum_probs=24.5

Q ss_pred             eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ..++.--+.+. |.-+.+.|++|+||||+.-.+
T Consensus         3 ~~lH~~~v~~~-g~gvl~~G~sG~GKStlal~l   34 (176)
T d1kkma_           3 RSMHGVLVDIY-GLGVLITGDSGVGKSETALEL   34 (176)
T ss_dssp             EEEEEEEEEET-TEEEEEECCTTSCHHHHHHHH
T ss_pred             ceEEEEEEEEC-CEEEEEEeCCCCCHHHHHHHH
Confidence            34555566664 788999999999999987554

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.04  E-value=0.0018  Score=48.19  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=18.5

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++||+|+-||||||..+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l   21 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFI   21 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999888

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.04  E-value=0.0015  Score=48.51  Aligned_cols=21  Identities=33%  Similarity=0.335  Sum_probs=18.8

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      -+.+.||.|+||||+.++++.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999964

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0016  Score=46.45  Aligned_cols=18  Identities=28%  Similarity=0.349  Sum_probs=16.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         8 i~ivG~~~vGKTsLi~~l   25 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRY   25 (186)
T ss_dssp             EEEESCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0016  Score=48.01  Aligned_cols=20  Identities=30%  Similarity=0.388  Sum_probs=18.3

Q ss_pred             EEEEccCCCcHHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.|.||.|+||||+.+++..
T Consensus        38 lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHH
Confidence            78999999999999999954

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0017  Score=45.78  Aligned_cols=18  Identities=22%  Similarity=0.338  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         8 i~lvG~~~vGKTsLi~~l   25 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRF   25 (171)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999987

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.01  E-value=0.0013  Score=46.50  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=17.1

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus        14 kIvlvG~~~vGKTSli~rl   32 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKL   32 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.0017  Score=45.54  Aligned_cols=18  Identities=22%  Similarity=0.204  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|..|+|||||++.+
T Consensus         7 i~lvG~~~vGKTsli~rl   24 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRF   24 (167)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999976

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0018  Score=45.88  Aligned_cols=19  Identities=16%  Similarity=0.170  Sum_probs=16.8

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus         4 KivvvG~~~vGKTsLi~~~   22 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVN   22 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4788999999999999776

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0018  Score=45.71  Aligned_cols=18  Identities=22%  Similarity=0.298  Sum_probs=16.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         9 I~vvG~~~vGKSSli~~~   26 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRY   26 (174)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999776

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0019  Score=45.05  Aligned_cols=18  Identities=22%  Similarity=0.318  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|..|+|||||++.+
T Consensus         3 v~vvG~~~vGKTsLi~r~   20 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRF   20 (164)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999976

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.92  E-value=0.002  Score=45.96  Aligned_cols=18  Identities=17%  Similarity=0.325  Sum_probs=16.8

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|..|+|||||++.+
T Consensus         5 v~vvG~~~vGKSSLi~~l   22 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQY   22 (184)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0022  Score=44.87  Aligned_cols=20  Identities=20%  Similarity=0.087  Sum_probs=17.9

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -.++|+|+.|+|||||++.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~   24 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQF   24 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHH
Confidence            45889999999999999876

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0021  Score=45.08  Aligned_cols=18  Identities=22%  Similarity=0.314  Sum_probs=16.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         7 ivlvG~~~vGKTsli~~~   24 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQF   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.90  E-value=0.002  Score=47.76  Aligned_cols=19  Identities=32%  Similarity=0.462  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++-+
T Consensus         8 KilllG~~~vGKTsll~~~   26 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQM   26 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.00053  Score=47.70  Aligned_cols=18  Identities=28%  Similarity=0.418  Sum_probs=17.3

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.++|||||++.|
T Consensus         3 I~liG~~n~GKSSLin~l   20 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRL   20 (160)
T ss_dssp             EEEECCHHHHTCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999998

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.85  E-value=0.0026  Score=47.33  Aligned_cols=23  Identities=17%  Similarity=0.120  Sum_probs=20.4

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ..+.|.||.|+||||++|.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999998654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.0023  Score=44.63  Aligned_cols=18  Identities=22%  Similarity=0.248  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         5 v~liG~~~vGKTsLl~~~   22 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRF   22 (165)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0023  Score=44.96  Aligned_cols=18  Identities=28%  Similarity=0.252  Sum_probs=16.4

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         5 i~viG~~~vGKTsLi~r~   22 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRF   22 (171)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            689999999999999865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0023  Score=44.78  Aligned_cols=18  Identities=28%  Similarity=0.252  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         6 i~lvG~~~vGKTsLi~r~   23 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0023  Score=44.81  Aligned_cols=18  Identities=17%  Similarity=0.283  Sum_probs=16.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|..|+|||||++.+
T Consensus         6 ivlvG~~~vGKTsLi~r~   23 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRY   23 (167)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            689999999999999876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0024  Score=46.06  Aligned_cols=18  Identities=28%  Similarity=0.277  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         9 ivvvG~~~vGKTsli~~l   26 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRF   26 (194)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999977

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0024  Score=44.97  Aligned_cols=18  Identities=33%  Similarity=0.383  Sum_probs=16.8

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         8 I~lvG~~~vGKTsll~~~   25 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQF   25 (174)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0025  Score=45.56  Aligned_cols=19  Identities=32%  Similarity=0.560  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|..|+|||||++-+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999988

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=95.74  E-value=0.011  Score=44.79  Aligned_cols=19  Identities=11%  Similarity=0.079  Sum_probs=17.1

Q ss_pred             eCCceeEEEEccCCCcHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKST   51 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKST   51 (185)
                      +.+|+.+.|.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            3678999999999999997

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0026  Score=44.68  Aligned_cols=18  Identities=33%  Similarity=0.320  Sum_probs=16.8

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         4 i~lvG~~~vGKTsLi~~~   21 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIF   21 (168)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            689999999999999987

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0029  Score=46.84  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=20.0

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++++|=|+=||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            5899999999999999999954

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0027  Score=44.88  Aligned_cols=19  Identities=26%  Similarity=0.148  Sum_probs=17.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|..|+|||||++.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~   26 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQF   26 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.72  E-value=0.0028  Score=47.11  Aligned_cols=20  Identities=30%  Similarity=0.305  Sum_probs=18.6

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -+++|+|.-.||||||++.|
T Consensus         6 p~IaIiGh~d~GKSTL~~~L   25 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHI   25 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHH
Confidence            46999999999999999988

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0024  Score=47.50  Aligned_cols=20  Identities=40%  Similarity=0.532  Sum_probs=18.1

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      -++.|+|.=|||||||++-+
T Consensus         4 Pv~iitGFLGaGKTTll~~l   23 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHI   23 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHH
T ss_pred             CEEEEeeCCCCCHHHHHHHH
Confidence            47899999999999999877

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0028  Score=49.27  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             eEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      |.=+.+.+|+..+|+|+.|+|||||+..|..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            3345678999999999999999999988844

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.65  E-value=0.0028  Score=47.95  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .-+.|.||.|+|||++.+.|+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            4478999999999999999964

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.64  E-value=0.0029  Score=49.35  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=20.5

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ..-+.+.||.|+|||.|.|+|+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            355678999999999999999764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.003  Score=44.32  Aligned_cols=18  Identities=22%  Similarity=0.325  Sum_probs=16.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         9 i~vvG~~~vGKTsLi~~l   26 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRF   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            689999999999999876

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0031  Score=44.25  Aligned_cols=18  Identities=22%  Similarity=0.290  Sum_probs=16.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         6 i~vvG~~~vGKTsLi~~~   23 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRF   23 (170)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999876

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0031  Score=44.30  Aligned_cols=18  Identities=22%  Similarity=0.183  Sum_probs=16.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         5 i~lvG~~~vGKTsli~r~   22 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRF   22 (168)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999876

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0031  Score=44.66  Aligned_cols=18  Identities=28%  Similarity=0.349  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus        10 i~vvG~~~vGKTsli~~l   27 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRF   27 (177)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999976

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0031  Score=44.52  Aligned_cols=18  Identities=28%  Similarity=0.261  Sum_probs=16.5

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         6 v~lvG~~~vGKTsLi~~~   23 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIF   23 (172)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999865

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.61  E-value=0.0076  Score=43.39  Aligned_cols=31  Identities=23%  Similarity=0.060  Sum_probs=24.3

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++.-.+.+ .|.-+.+.|++|+||||+.-.+
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHH
Confidence            345556666 4788999999999999997555

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0028  Score=44.68  Aligned_cols=18  Identities=22%  Similarity=0.457  Sum_probs=16.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         6 i~vvG~~~vGKTsli~~~   23 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRH   23 (170)
T ss_dssp             EEEEECTTSSHHHHHHTT
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            788999999999999876

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.56  E-value=0.019  Score=39.50  Aligned_cols=111  Identities=18%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             ceeEEEEccCCCcHHH-HHHHHHHHHHHHh-hCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297          36 VSFNLVTGPNMGGKST-YIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC  113 (185)
Q Consensus        36 g~~~~l~G~NGsGKST-Llk~iG~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l  113 (185)
                      |.+..++||=.||||| |++.+-......+ +..+-|.......  +.+..+.|.... ...+...  .+.....-....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~--~~i~s~~g~~~~-~~~~~~~--~~~~~~~~~~~~   76 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI--RNIQSRTGTSLP-SVEVESA--PEILNYIMSNSF   76 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGC--SSCCCCCCCSSC-CEEESST--HHHHHHHHSTTS
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEccccccc--ceEEcccCceee-eEEeccc--hhhHHHHHhhcc
Confidence            6788999999999999 7776644332221 2223344332211  122222222110 0111111  111011111223


Q ss_pred             -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                       .+.++++.||-   --. + ..+.+ +++.+.+ .|..|+++.=+
T Consensus        77 ~~~~dvI~IDE~---QFf-~-d~i~~-~~~~~~~-~g~~Viv~GLd  115 (139)
T d2b8ta1          77 NDETKVIGIDEV---QFF-D-DRICE-VANILAE-NGFVVIISGLD  115 (139)
T ss_dssp             CTTCCEEEECSG---GGS-C-THHHH-HHHHHHH-TTCEEEEECCS
T ss_pred             ccCcCEEEechh---hhc-c-hhHHH-HHHHHHh-cCceEEEEEec
Confidence             68899999998   222 2 22333 3466665 68998887644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0036  Score=44.54  Aligned_cols=19  Identities=26%  Similarity=0.267  Sum_probs=17.3

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|..|+|||||++.+
T Consensus         7 KivviG~~~vGKTsli~~~   25 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISY   25 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999876

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0036  Score=43.91  Aligned_cols=18  Identities=17%  Similarity=0.276  Sum_probs=16.8

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         9 i~vvG~~~vGKTsli~~~   26 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRF   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            899999999999999876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0037  Score=43.73  Aligned_cols=18  Identities=28%  Similarity=0.237  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|..|+|||||++.+
T Consensus         6 ivvvG~~~vGKTsli~r~   23 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999876

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.45  E-value=0.0038  Score=44.44  Aligned_cols=19  Identities=21%  Similarity=0.321  Sum_probs=16.9

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         4 KivliG~~~vGKTsli~r~   22 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVF   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999866

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.0034  Score=50.80  Aligned_cols=18  Identities=39%  Similarity=0.615  Sum_probs=17.5

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|..|+|||||+|.|
T Consensus        59 Iai~G~~n~GKSSLiNaL   76 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTL   76 (400)
T ss_dssp             EEEEECTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            899999999999999998

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.35  E-value=0.0044  Score=43.53  Aligned_cols=19  Identities=21%  Similarity=0.186  Sum_probs=17.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++|+|+.|+|||||++.+
T Consensus         6 KivlvG~~~vGKTsli~~~   24 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQF   24 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0043  Score=44.28  Aligned_cols=18  Identities=28%  Similarity=0.355  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|..|+|||||++.+
T Consensus        12 i~lvG~~~vGKTsLi~r~   29 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSY   29 (185)
T ss_dssp             EEEEECTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            889999999999999876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0043  Score=44.12  Aligned_cols=19  Identities=32%  Similarity=0.260  Sum_probs=17.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++++|+.|+|||||++.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~   25 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRF   25 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999865

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.32  E-value=0.011  Score=42.20  Aligned_cols=31  Identities=23%  Similarity=0.034  Sum_probs=23.4

Q ss_pred             eeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .++..-+.+. |.=+.+.|++|+||||+.-.+
T Consensus         5 ~~H~~~v~~~-g~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2           5 SLHGVLVDVY-GVGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EEESEEEEET-TEEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEEEEC-CEEEEEEeCCCCCHHHHHHHH
Confidence            3455555654 788999999999999986443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0047  Score=43.42  Aligned_cols=18  Identities=28%  Similarity=0.233  Sum_probs=16.3

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|+.|+|||||++.+
T Consensus         7 i~lvG~~~vGKTsll~~~   24 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQF   24 (169)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            678999999999999876

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.26  E-value=0.0047  Score=43.64  Aligned_cols=18  Identities=33%  Similarity=0.547  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|..|+|||||++-+
T Consensus         5 ivllG~~~vGKTsl~~r~   22 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQM   22 (195)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.26  E-value=0.056  Score=43.31  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             EEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHH-HHHHhC--CC
Q psy5297          39 NLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETA-TVIKKC--TE  115 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~-~ia~~l--~~  115 (185)
                      ..|+||.|.|||++..-+..-...   | -+|..-....++.     +.+.... .. ..+-|+..+|+ .+...+  .+
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~~---~-~vp~~l~~~~i~~-----ld~~~l~-ag-~~~~g~~e~r~~~i~~~~~~~~  114 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIVK---G-DVPEGLKGKRIVS-----LQMGSLL-AG-AKYRGEFEERLKAVIQEVVQSQ  114 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHHH---T-CSCTTSTTCEEEE-----ECC-------------CHHHHHHHHHHHHHTTC
T ss_pred             CeEECCCCCCHHHHHHHHHHHHHh---C-CCCHHHcCceEEE-----eeHhhhh-cc-cCcchhHHHHHHHHHHHhccCC
Confidence            578999999999998877653332   2 3333221111111     1111110 00 01112233333 344333  33


Q ss_pred             -CeEEEEeCCCCCCCc--CC-hhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297         116 -NSLVIIDELGRGTST--FD-GFGMACSIARELASNRQPFTLFATHFHEIALL  164 (185)
Q Consensus       116 -p~llllDEP~~g~~~--~d-~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~  164 (185)
                       +-+|++||.-.=+..  .. .......+.-.|.+ ....+|-+|...+...+
T Consensus       115 ~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r-g~~~~I~~tT~~ey~~~  166 (387)
T d1qvra2         115 GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLDEYREI  166 (387)
T ss_dssp             SSEEEEECCC-------------------HHHHHT-TCCCEEEEECHHHHHHH
T ss_pred             CceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC-CCcceeeecCHHHHHHh
Confidence             457999998442221  11 11233434344554 56788887775444443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0051  Score=44.06  Aligned_cols=18  Identities=28%  Similarity=0.342  Sum_probs=16.4

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|+.|+|||||++.+
T Consensus         6 vvllG~~~vGKTSli~r~   23 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISY   23 (191)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999998765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.14  E-value=0.0031  Score=47.16  Aligned_cols=22  Identities=18%  Similarity=-0.055  Sum_probs=18.5

Q ss_pred             eEEEEccCCCcHHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ++.+.||.|+||||+++.+..-
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            4566799999999999999654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0062  Score=46.90  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=19.3

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      =.+++++||-++||||||+.+
T Consensus        32 v~vvsi~G~~~sGKS~llN~l   52 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKL   52 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHH
Confidence            368999999999999999988

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.0061  Score=43.20  Aligned_cols=18  Identities=39%  Similarity=0.667  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|..|+|||||++.+
T Consensus         5 iv~lG~~~vGKTsll~r~   22 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQM   22 (200)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999987

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.0039  Score=43.91  Aligned_cols=18  Identities=22%  Similarity=0.229  Sum_probs=8.5

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|..|+|||||++.+
T Consensus         9 i~vvG~~~vGKTsLi~~l   26 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRF   26 (173)
T ss_dssp             EEEECCCCC---------
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999866

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.61  E-value=0.066  Score=39.99  Aligned_cols=23  Identities=30%  Similarity=0.199  Sum_probs=19.6

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +.-+.|.|+.|+||+++.+.|-.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            44578999999999999999854

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.015  Score=45.34  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ..+.++||.|+|||.|.|.|+..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            46889999999999999999875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.43  E-value=0.011  Score=48.36  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             eeEEEEccCCCcHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +=+.++||.|+|||-|.|.|+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999954

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.011  Score=43.97  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=18.4

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.|.||+|+||||+.+.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999998854

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.23  E-value=0.014  Score=46.61  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=23.7

Q ss_pred             eeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          32 KSGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .++++..+++.||.|+||||+.+.|..
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            457888999999999999999999843

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.21  E-value=0.18  Score=35.12  Aligned_cols=56  Identities=14%  Similarity=0.141  Sum_probs=37.2

Q ss_pred             CCCeEEEEeCCCCCC--CcCChhHHHHHHHHHHHhc-CCCeEEEecCh--hHHHHhhccccceee
Q psy5297         114 TENSLVIIDELGRGT--STFDGFGMACSIARELASN-RQPFTLFATHF--HEIALLSRVIPTFRN  173 (185)
Q Consensus       114 ~~p~llllDEP~~g~--~~~d~~~~~~~il~~l~~~-~~~~vii~tH~--~~~~~~~d~~~~l~~  173 (185)
                      .+.++++|||.+..+  ..++...    +++.+.++ .+.-+|+|=++  .++.+.||.+.-|+.
T Consensus        93 ~~~dllILDEi~~Ai~~gli~~~~----v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          93 PLLDMVVLDELTYMVAYDYLPLEE----VISALNARPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             TTCSEEEEETHHHHHHTTSSCHHH----HHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             CccCEEeHHHHHHHHHcCCCCHHH----HHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            669999999994322  2223222    33444432 36788999997  788899998877654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.013  Score=42.67  Aligned_cols=23  Identities=13%  Similarity=0.041  Sum_probs=19.7

Q ss_pred             eeEEEEccCCCcHHHHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      ..+.+.||.|+||||+.+.+..-
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Confidence            34889999999999999998653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.98  E-value=0.014  Score=45.02  Aligned_cols=19  Identities=37%  Similarity=0.424  Sum_probs=18.2

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+||+|...+|||||++.+
T Consensus        12 kiGivG~Pn~GKSTlfnal   30 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAI   30 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4999999999999999999

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.015  Score=46.48  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=17.8

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +.+.|+|+.|||||++++.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~l   70 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLREL   70 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHH
Confidence            45899999999999999866

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.74  E-value=0.016  Score=44.78  Aligned_cols=18  Identities=33%  Similarity=0.307  Sum_probs=17.6

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      +||+|...+|||||++.+
T Consensus         3 v~lvG~pn~GKStlfn~l   20 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAA   20 (319)
T ss_dssp             EEEEECTTSSHHHHHHHH
T ss_pred             EeEECCCCCCHHHHHHHH
Confidence            799999999999999999

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.51  E-value=0.018  Score=44.13  Aligned_cols=18  Identities=33%  Similarity=0.549  Sum_probs=17.4

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.-.||||||++.|
T Consensus        27 ivVvG~~ssGKSSliNaL   44 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENI   44 (306)
T ss_dssp             EEEEECSSSSHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHH
Confidence            789999999999999999

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.49  E-value=0.019  Score=44.07  Aligned_cols=27  Identities=15%  Similarity=-0.082  Sum_probs=23.8

Q ss_pred             EeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          31 FKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        31 l~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      +.+.+|+..+|+|+.|+|||||+..+-
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            456889999999999999999987774

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.48  E-value=0.023  Score=43.40  Aligned_cols=19  Identities=21%  Similarity=0.279  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      -++|+|+-|+|||||...|
T Consensus         4 Nv~iiGh~~~GKTtL~e~l   22 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEAL   22 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHH
Confidence            4799999999999999877

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.26  E-value=0.023  Score=40.64  Aligned_cols=18  Identities=22%  Similarity=0.244  Sum_probs=17.0

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.=.+|||||++.|
T Consensus         8 IaiiGhvd~GKSTL~~~L   25 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKAL   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEEeccCCcHHHHHHHH
Confidence            689999999999999998

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.20  E-value=0.023  Score=43.33  Aligned_cols=18  Identities=28%  Similarity=0.403  Sum_probs=17.3

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.-.||||||++.|
T Consensus        29 ivvvG~~SsGKSsliNaL   46 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENF   46 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            789999999999999999

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.15  E-value=0.023  Score=43.16  Aligned_cols=19  Identities=26%  Similarity=0.198  Sum_probs=18.0

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+||+|-..+|||||++.|
T Consensus         4 ~~GivG~Pn~GKSTlf~~l   22 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNAL   22 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            4899999999999999999

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.09  E-value=0.016  Score=45.07  Aligned_cols=24  Identities=33%  Similarity=0.354  Sum_probs=20.8

Q ss_pred             ceeEEEEccCCCcHHHHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      |.-+.|.||-|+|||||+|.+..+
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CCeEEEECCCCccHHHHHHHHHHh
Confidence            345899999999999999999765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.05  E-value=0.026  Score=41.05  Aligned_cols=18  Identities=22%  Similarity=0.154  Sum_probs=17.0

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.-++|||||+..|
T Consensus         6 i~iiGhvd~GKSTL~~~L   23 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAAL   23 (204)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHH
Confidence            789999999999999888

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.37  E-value=0.036  Score=42.42  Aligned_cols=20  Identities=20%  Similarity=0.049  Sum_probs=18.2

Q ss_pred             eeEEEEccCCCcHHHHHHHH
Q psy5297          37 SFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        37 ~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +-++|+|.-|||||||...|
T Consensus         7 Rni~i~gh~~~GKTtL~e~l   26 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERI   26 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHH
Confidence            45899999999999999888

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.033  Score=43.43  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=17.8

Q ss_pred             CCceeEEEEccCCCcHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYI   53 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLl   53 (185)
                      +.|++.++.|.+|+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            56899999999999999963

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.27  E-value=0.023  Score=43.58  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=23.2

Q ss_pred             EEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297          30 YFKSGEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        30 sl~i~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      =+.+-+|+..+|+|+.|+|||+|+..+
T Consensus        61 l~pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          61 MIPVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             TSCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             cccccCCceEeeccCCCCChHHHHHHH
Confidence            345678999999999999999998764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.04  Score=43.65  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             CceeEEEEccCCCcHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+.+..|.||-|+||||++..+
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHH
Confidence            3679999999999999987654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.21  E-value=0.034  Score=43.45  Aligned_cols=19  Identities=26%  Similarity=0.240  Sum_probs=17.1

Q ss_pred             CCceeEEEEccCCCcHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTY   52 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTL   52 (185)
                      +.|++..+.|.+|+|||||
T Consensus        12 ~~~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHH
T ss_pred             CCCCEEEEEccCCCCcccc
Confidence            3589999999999999996

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.19  E-value=0.026  Score=37.73  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=16.7

Q ss_pred             CCceeEEEEccCCCcHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYI   53 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLl   53 (185)
                      ++.+...|.+|-|||||+.+
T Consensus         6 ~~~~~~ll~apTGsGKT~~~   25 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKV   25 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHH
T ss_pred             cCCCEEEEEeCCCCCHHHHH
Confidence            35678899999999999865

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.81  E-value=0.037  Score=42.17  Aligned_cols=16  Identities=19%  Similarity=0.169  Sum_probs=13.5

Q ss_pred             eEEEEccCCCcHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYI   53 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLl   53 (185)
                      -+.|.|+-||||||.|
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3678899999999865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.66  E-value=0.031  Score=42.15  Aligned_cols=36  Identities=11%  Similarity=0.103  Sum_probs=24.0

Q ss_pred             CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297         114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT  156 (185)
Q Consensus       114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t  156 (185)
                      .+.+++++||.      .|.......++..+.. .+..++++-
T Consensus       205 ~~~~~i~vDE~------QD~~~~~~~~l~~~~~-~~~~~~~~G  240 (306)
T d1uaaa1         205 NKIRYLLVDEY------QDTNTSQYELVKLLVG-SRARFTVVG  240 (306)
T ss_dssp             TTCSEEEESCG------GGCBHHHHHHHHHHHT-TTCCEEEEC
T ss_pred             HHhhHHHHHHH------HHhhHHHHhhhhhccc-CCCcceEee
Confidence            67899999999      6655565556666665 345555543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.43  E-value=0.044  Score=43.02  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=18.4

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.|=|+=||||||+++.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC
T ss_pred             EEEEECCcCCCHHHHHHHHHH
Confidence            478899999999999999943

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.39  E-value=0.064  Score=38.74  Aligned_cols=24  Identities=13%  Similarity=0.023  Sum_probs=20.8

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.-+.+.||+|+||||+.+.+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.36  E-value=0.041  Score=43.21  Aligned_cols=21  Identities=19%  Similarity=-0.009  Sum_probs=18.8

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.|=|+=||||||+++.|..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488899999999999999954

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.26  E-value=0.056  Score=39.61  Aligned_cols=18  Identities=33%  Similarity=0.385  Sum_probs=16.7

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.-++|||||+..|
T Consensus         6 i~viGHVd~GKTTL~~~L   23 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRL   23 (224)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHH
Confidence            789999999999999877

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.22  E-value=0.051  Score=42.48  Aligned_cols=20  Identities=20%  Similarity=0.180  Sum_probs=17.9

Q ss_pred             CCceeEEEEccCCCcHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYI   53 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLl   53 (185)
                      +.|++..+.|-+|+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46889999999999999984

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.22  E-value=0.058  Score=38.80  Aligned_cols=19  Identities=32%  Similarity=0.274  Sum_probs=17.4

Q ss_pred             eEEEEccCCCcHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~i   56 (185)
                      -++++|.=.+|||||++.|
T Consensus        10 ni~iiGhVd~GKSTL~~~L   28 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAI   28 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEEccCCcHHHHHHHH
Confidence            3899999999999999988

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.05  E-value=0.063  Score=42.13  Aligned_cols=21  Identities=29%  Similarity=0.082  Sum_probs=18.2

Q ss_pred             eEEEEccCCCcHHHHHHHHHH
Q psy5297          38 FNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        38 ~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      .+.|=|+=|+||||+++.|..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEECCccCCHHHHHHHHHH
Confidence            477889999999999999843

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.04  E-value=0.07  Score=42.30  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=18.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSIGVS   59 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~iG~i   59 (185)
                      +.++||.|+|||-+.|.|+..
T Consensus        71 iLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             eeeeCCCCccHHHHHHHHHhh
Confidence            677899999999999999754

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.99  E-value=0.047  Score=41.95  Aligned_cols=29  Identities=17%  Similarity=0.154  Sum_probs=24.6

Q ss_pred             EEEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297          29 VYFKSGEVSFNLVTGPNMGGKSTYIRSIG   57 (185)
Q Consensus        29 isl~i~~g~~~~l~G~NGsGKSTLlk~iG   57 (185)
                      .=+.+-+|+..+|+|+.|+|||+|+..+.
T Consensus        61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            34567899999999999999999987663

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.70  E-value=0.07  Score=38.47  Aligned_cols=18  Identities=28%  Similarity=0.176  Sum_probs=17.1

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.-.+|||||++.|
T Consensus         6 i~iiGHvd~GKSTL~~~l   23 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAI   23 (196)
T ss_dssp             EEEESSTTSSHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHH
Confidence            789999999999999988

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.093  Score=35.50  Aligned_cols=19  Identities=32%  Similarity=0.548  Sum_probs=17.1

Q ss_pred             CceeEEEEccCCCcHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYI   53 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLl   53 (185)
                      +|.+..++||=.|||||-|
T Consensus         1 ~G~L~li~GpMfsGKTt~L   19 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTEL   19 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHH
T ss_pred             CcEEEEEEecccCHHHHHH
Confidence            5899999999999999954

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.90  E-value=0.1  Score=39.50  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      ++-..+.+.||-++|||||+++|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            5556889999999999999999854

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.49  E-value=0.11  Score=34.73  Aligned_cols=23  Identities=0%  Similarity=-0.166  Sum_probs=20.4

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|=.+.++|-+||||||+.+.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al   26 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIAL   26 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHH
Confidence            45677899999999999999988

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.05  E-value=0.11  Score=38.11  Aligned_cols=18  Identities=39%  Similarity=0.392  Sum_probs=16.8

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.-.+|||||+..|
T Consensus        12 i~viGHVd~GKSTL~~~L   29 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRL   29 (222)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            688999999999999888

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.10  E-value=0.2  Score=34.15  Aligned_cols=109  Identities=18%  Similarity=0.200  Sum_probs=52.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH-HHHHHHHh-hCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK  111 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~  111 (185)
                      +.|.+..++||=.|||||-|=-. -.....++ +..+-|.....+. .+.+..+.|.... ...+.++..       +..
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~-~~~i~sh~g~~~~-a~~~~~~~~-------~~~   75 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQ-AVAIKNSRE-------ILK   75 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEE-CEEESSSTH-------HHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccc-cceeeecccceEE-EEEecchhh-------hhh
Confidence            47899999999999999964332 22211111 1112233221111 1122233332211 111112111       112


Q ss_pred             hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297         112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF  158 (185)
Q Consensus       112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~  158 (185)
                      .. .++++++.||-   =-..|  ...+ .+..+.. .|.+|+++.=+
T Consensus        76 ~~~~~~dvI~IDE~---QFf~d--~~~~-~~~~l~~-~g~~Viv~GLd  116 (141)
T d1xx6a1          76 YFEEDTEVIAIDEV---QFFDD--EIVE-IVNKIAE-SGRRVICAGLD  116 (141)
T ss_dssp             HCCTTCSEEEECSG---GGSCT--HHHH-HHHHHHH-TTCEEEEEECS
T ss_pred             hhcccccEEEEeeh---hhccc--cHHH-HHHhhee-CCcEEEEEEec
Confidence            34 78999999997   22212  2223 2466665 58998886543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.40  E-value=0.25  Score=37.08  Aligned_cols=21  Identities=33%  Similarity=0.324  Sum_probs=18.9

Q ss_pred             ceeEEEEccCCCcHHHHHHHH
Q psy5297          36 VSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        36 g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +-.++++|-..+|||||++.|
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L  132 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRL  132 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHH
T ss_pred             ceEEEEEecCccchhhhhhhh
Confidence            345899999999999999999

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=86.14  E-value=0.23  Score=42.45  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+.+.+.+.|.+|||||+-.|.|
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~i  106 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKI  106 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Confidence            46789999999999999999988

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.87  E-value=0.24  Score=42.54  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=21.2

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+.+.+.+.|.+|||||+-.|.|
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~i  145 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKV  145 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHH
Confidence            46789999999999999999998

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.59  E-value=0.2  Score=35.25  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=18.2

Q ss_pred             eeEEEEccC-CCcHHHHHHHHHHH
Q psy5297          37 SFNLVTGPN-MGGKSTYIRSIGVS   59 (185)
Q Consensus        37 ~~~~l~G~N-GsGKSTLlk~iG~i   59 (185)
                      +.+-|+|-+ |+||||+--.|+..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~a   25 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQA   25 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            467899998 99999987666543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.33  E-value=0.17  Score=39.69  Aligned_cols=18  Identities=33%  Similarity=0.185  Sum_probs=17.3

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++|+|.-++|||||+..|
T Consensus        20 I~iiGhvd~GKTTL~d~L   37 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSL   37 (341)
T ss_dssp             EEEECCGGGTHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHH
Confidence            899999999999999988

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.27  E-value=0.17  Score=37.54  Aligned_cols=18  Identities=33%  Similarity=0.246  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            789999999999998888

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=84.72  E-value=0.3  Score=41.93  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=21.1

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      +..+.+.+.|.+|||||+-.|.|
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~i  111 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKV  111 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHH
Confidence            45789999999999999999988

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.58  E-value=0.27  Score=36.31  Aligned_cols=18  Identities=33%  Similarity=0.311  Sum_probs=16.5

Q ss_pred             EEEEccCCCcHHHHHHHH
Q psy5297          39 NLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        39 ~~l~G~NGsGKSTLlk~i   56 (185)
                      ++++|.-++|||||...|
T Consensus         9 i~iiGHvD~GKsTl~~~l   26 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHL   26 (239)
T ss_dssp             EEEEECTTSCHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHH
Confidence            789999999999998777

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.17  E-value=0.26  Score=35.82  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=22.1

Q ss_pred             eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297          33 SGEVSFNLVTGPNMGGKSTYIRSIGV   58 (185)
Q Consensus        33 i~~g~~~~l~G~NGsGKSTLlk~iG~   58 (185)
                      +++-..+++.||-++|||++...|-.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHH
Confidence            46778999999999999999887744

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.73  E-value=0.34  Score=42.09  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.7

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+.+.+.+.|.+|||||+-.|.|
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~i  143 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRV  143 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHH
Confidence            45789999999999999998888

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.65  E-value=0.13  Score=36.54  Aligned_cols=19  Identities=21%  Similarity=0.193  Sum_probs=15.4

Q ss_pred             CceeEEEEccCCCcHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYI   53 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLl   53 (185)
                      .|+-+.+..|.|||||+..
T Consensus        39 ~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHH
Confidence            4666789999999998753

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.22  E-value=0.14  Score=37.34  Aligned_cols=19  Identities=21%  Similarity=0.170  Sum_probs=16.3

Q ss_pred             CceeEEEEccCCCcHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYI   53 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLl   53 (185)
                      +|+-+.+++|.|+|||+..
T Consensus        57 ~g~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHH
T ss_pred             CCCCEEEEecCCChHHHHH
Confidence            5777889999999999754

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=83.16  E-value=0.37  Score=41.80  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      .+.+.+.|.|.+|||||.-.|.|
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~i  141 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKV  141 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHH
Confidence            46799999999999999998887

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=82.50  E-value=0.41  Score=41.10  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             CCceeEEEEccCCCcHHHHHHHH
Q psy5297          34 GEVSFNLVTGPNMGGKSTYIRSI   56 (185)
Q Consensus        34 ~~g~~~~l~G~NGsGKSTLlk~i   56 (185)
                      ...+.+.+.|.+|||||+-.|.+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~i  114 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYA  114 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHH
Confidence            56789999999999999999988

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=81.99  E-value=0.62  Score=32.56  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=20.2

Q ss_pred             CceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297          35 EVSFNLVTGPNMGGKSTYIRSIGVSV   60 (185)
Q Consensus        35 ~g~~~~l~G~NGsGKSTLlk~iG~i~   60 (185)
                      |+++++|+|-||  |||.-.+|..+.
T Consensus         1 p~kvI~VTGTnG--KTTt~~mi~~iL   24 (214)
T d1gg4a4           1 PARVVALTGSSG--KTSVKEMTAAIL   24 (214)
T ss_dssp             CCEEEEEECSSC--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHH
Confidence            468999999985  999999997654