Psyllid ID: psy5309
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1618 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BMJ2 | 1178 | Leucine--tRNA ligase, cyt | yes | N/A | 0.280 | 0.385 | 0.514 | 1e-155 | |
| Q5R614 | 1176 | Leucine--tRNA ligase, cyt | yes | N/A | 0.283 | 0.390 | 0.510 | 1e-153 | |
| Q9P2J5 | 1176 | Leucine--tRNA ligase, cyt | yes | N/A | 0.283 | 0.390 | 0.510 | 1e-153 | |
| Q09996 | 1186 | Leucine--tRNA ligase OS=C | yes | N/A | 0.284 | 0.388 | 0.451 | 1e-126 | |
| Q10490 | 1111 | Putative leucine--tRNA li | yes | N/A | 0.275 | 0.400 | 0.403 | 1e-107 | |
| Q54N83 | 1058 | Leucine--tRNA ligase, cyt | yes | N/A | 0.280 | 0.429 | 0.410 | 1e-104 | |
| P26637 | 1090 | Leucine--tRNA ligase, cyt | yes | N/A | 0.279 | 0.415 | 0.393 | 1e-103 | |
| P10857 | 1123 | Leucine--tRNA ligase, cyt | N/A | N/A | 0.298 | 0.430 | 0.359 | 6e-87 | |
| C4V8L1 | 884 | Probable leucine--tRNA li | N/A | N/A | 0.278 | 0.510 | 0.351 | 7e-85 | |
| B7XHP6 | 860 | Probable leucine--tRNA li | N/A | N/A | 0.316 | 0.595 | 0.325 | 5e-78 |
| >sp|Q8BMJ2|SYLC_MOUSE Leucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 287/558 (51%), Positives = 361/558 (64%), Gaps = 104/558 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++PVP++++P GNL AVTV ++LKIQSQND++KL EAKE +YL+GFYDG+MLV F
Sbjct: 425 VLPFEPVPVLEIPGIGNLPAVTVCDELKIQSQNDREKLAEAKEKLYLRGFYDGVMLVDGF 484
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
KG+K+Q VKK +QK + G AL IY P V S S D+
Sbjct: 485 KGQKIQHVKKTIQKNMIDAGDAL---------IYMEPE------------KQVMSRSADE 523
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
CVVALCDQWYLDYG+ WK QCL NM T+ +E R
Sbjct: 524 -----------------------CVVALCDQWYLDYGDENWKKQTFQCLKNMETFCEESR 560
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
+NF ASL+WL E+ACSRTYGLGT+LPWDEQWLIESLSDSTIYMA+YTVAHLLQGG G+
Sbjct: 561 KNFEASLDWLQEHACSRTYGLGTRLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGDLNGQ 620
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
+ L I+ + +T +VWDYVFFK APF PK ++PK KLD +++EF++WYPVDLR SGKDL
Sbjct: 621 AESPLGIRPQQMTKDVWDYVFFKDAPF-PKTQIPKEKLDQLKQEFEFWYPVDLRASGKDL 679
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
I NHL+++IY H A+W ++ + WP +RANGHLLLNS K
Sbjct: 680 IPNHLSYYIYNHVAMWPEQSDKWPVSVRANGHLLLNSEK--------------------- 718
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
++ G+ L S + K + + L
Sbjct: 719 ----------------------MSKSTGNFLTLSQAVDKFSADGMRLA------------ 744
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
LAD+GD+VEDANFVE+MADAGILRLYT++EWVKE+LA+ S+LR+G DSFND+VF SE
Sbjct: 745 --LADAGDTVEDANFVEAMADAGILRLYTWVEWVKEMLASCSSLRSGPADSFNDRVFASE 802
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192
MN I +T+ +Y KM+FKEAL+TGFFE QAA+DKYREL A GMHR LV RF+EVQ +L
Sbjct: 803 MNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYREL--ATEGMHRELVFRFIEVQTIL 860
Query: 1193 LCPVCPHVAEHVYQLLGK 1210
L P CPH+ EH++ LLGK
Sbjct: 861 LTPFCPHLCEHIWTLLGK 878
|
Mus musculus (taxid: 10090) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 4 |
| >sp|Q5R614|SYLC_PONAB Leucine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=LARS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1399), Expect = e-153, Method: Compositional matrix adjust.
Identities = 288/564 (51%), Positives = 360/564 (63%), Gaps = 105/564 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++PVP+I++P +GNL AVT+ ++LKIQSQND++KL EAKE +YLKGFY+GIMLV F
Sbjct: 423 VLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGF 482
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
KG+KVQ+VKK +QKK+ G AL IY P V S S D+
Sbjct: 483 KGQKVQDVKKTIQKKMIDAGDAL---------IYMEPE------------KQVMSRSSDE 521
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
CVVALCDQWYLDYGE WK QCL N+ T+ +E R
Sbjct: 522 -----------------------CVVALCDQWYLDYGEENWKKQTSQCLKNLETFCEETR 558
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
RNF A+L WL E+ACSRTYGLGT LPWDEQWLIESLSDSTIYMA+YTVAHLLQGG G+
Sbjct: 559 RNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQ 618
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
+ L I+ + +T EVWDYVFFK APF PK ++ K KLD +++EF++WYPVDLR SGKDL
Sbjct: 619 AESPLGIRPQQMTKEVWDYVFFKEAPF-PKTQIAKEKLDQLKQEFEFWYPVDLRVSGKDL 677
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
+ NHL++++Y H A+W ++ + WP +RANGHLLLNS K S N
Sbjct: 678 VPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEK--------------MSKSTGN 723
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
LT L + ++G L L +A
Sbjct: 724 FLT---------------------------LTQAIDKFSADGMRLALADA---------- 746
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
GD+VEDANFVE+MADAGILRLYT++EWVKE++A +LR+G ++FND+VF SE
Sbjct: 747 ------GDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPANTFNDRVFASE 800
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192
+N I +T+ +Y KM+FKEAL+TGFFE QAA+DKYREL A GMHR LV RF+EVQ LL
Sbjct: 801 LNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYREL--AVEGMHRELVFRFIEVQTLL 858
Query: 1193 LCPVCPHVAEHVYQLLGK-DLIQN 1215
L P CPH+ EH++ LLGK D I N
Sbjct: 859 LAPFCPHLCEHIWTLLGKPDSIMN 882
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Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q9P2J5|SYLC_HUMAN Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 288/564 (51%), Positives = 359/564 (63%), Gaps = 105/564 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++PVP+I++P +GNL AVT+ ++LKIQSQND++KL EAKE +YLKGFY+GIMLV F
Sbjct: 423 VLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGF 482
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
KG+KVQ+VKK +QKK+ G AL IY P V S S D+
Sbjct: 483 KGQKVQDVKKTIQKKMIDAGDAL---------IYMEPE------------KQVMSRSSDE 521
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
CVVALCDQWYLDYGE WK QCL N+ T+ +E R
Sbjct: 522 -----------------------CVVALCDQWYLDYGEENWKKQTSQCLKNLETFCEETR 558
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
RNF A+L WL E+ACSRTYGLGT LPWDEQWLIESLSDSTIYMA+YTVAHLLQGG G+
Sbjct: 559 RNFEATLGWLQEHACSRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQ 618
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
+ L I+ + +T EVWDYVFFK APF PK ++ K KLD +++EF++WYPVDLR SGKDL
Sbjct: 619 AESPLGIRPQQMTKEVWDYVFFKEAPF-PKTQIAKEKLDQLKQEFEFWYPVDLRVSGKDL 677
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
+ NHL++++Y H A+W ++ + WP +RANGHLLLNS K S N
Sbjct: 678 VPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLLLNSEK--------------MSKSTGN 723
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
LT L + ++G L L +A
Sbjct: 724 FLT---------------------------LTQAIDKFSADGMRLALADA---------- 746
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
GD+VEDANFVE+MADAGILRLYT++EWVKE++A +LR+G +FND+VF SE
Sbjct: 747 ------GDTVEDANFVEAMADAGILRLYTWVEWVKEMVANWDSLRSGPASTFNDRVFASE 800
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192
+N I +T+ +Y KM+FKEAL+TGFFE QAA+DKYREL A GMHR LV RF+EVQ LL
Sbjct: 801 LNAGIIKTDQNYEKMMFKEALKTGFFEFQAAKDKYREL--AVEGMHRELVFRFIEVQTLL 858
Query: 1193 LCPVCPHVAEHVYQLLGK-DLIQN 1215
L P CPH+ EH++ LLGK D I N
Sbjct: 859 LAPFCPHLCEHIWTLLGKPDSIMN 882
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Catalyzes the specific attachment of an amino acid to its cognate tRNA in a two step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Exhibits a post-transfer editing activity to hydrolyze mischarged tRNAs. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q09996|SYLC_CAEEL Leucine--tRNA ligase OS=Caenorhabditis elegans GN=lrs-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust.
Identities = 256/567 (45%), Positives = 330/567 (58%), Gaps = 106/567 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++PVPII++ G+L AV + +LKI+SQN+KDKL+EAK+ VYLKGFYDG+MLVG++
Sbjct: 424 VLPFEPVPIIKIEGLGDLAAVEMCSRLKIESQNEKDKLEEAKKEVYLKGFYDGVMLVGKY 483
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
GKK +VKK++Q + G+A K Y P + G
Sbjct: 484 AGKKTADVKKVIQDDLTAEGLATK---------YVEPEKKVMSRSG-------------- 520
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
DE CVVALCDQWYL+YGE WKAAA++ L + T++DE R
Sbjct: 521 --------------------DE-CVVALCDQWYLNYGEAEWKAAAKKVLEPLRTFNDETR 559
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
R +++WLHEYACSR+YGLGTKLPWD Q+LIESLSDSTIY AYYTVAHLLQ G F G
Sbjct: 560 RGLETTVDWLHEYACSRSYGLGTKLPWDTQYLIESLSDSTIYNAYYTVAHLLQQGAFDGS 619
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
IKA+ +T W YVF V + KL +R+EF YWYP+D+R SGKDL
Sbjct: 620 VVGPAGIKADQMTDASWSYVFLGEIYDSKTMPVEEEKLKSLRKEFMYWYPIDMRASGKDL 679
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
I NHLT+ ++ H AIW + WP+GIRANGHLLLN+ K +
Sbjct: 680 IGNHLTYLLFNHAAIWPTDTSKWPKGIRANGHLLLNNEK------------------MSK 721
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
F+ + AI K S ++G L+L +A
Sbjct: 722 STGNFMTLEEAI----------------------EKFS-ADGMRLSLADA---------- 748
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQST--LRTGSQDSFNDKVFL 1130
GD +EDANFV +MADA ILRL+T IEW+KE++ + LR ++ F D+VF
Sbjct: 749 ------GDGLEDANFVYAMADAAILRLFTMIEWIKEMIEQRDAGLLRKDAK-KFADRVFA 801
Query: 1131 SEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAA-EGGMHRTLVLRFVEVQ 1189
+EMN I TE +Y FK+AL+TGFFE QA RD YREL A + M +LV RF+E Q
Sbjct: 802 NEMNSLIAATEQNYEATNFKDALKTGFFEYQAIRDTYRELCAGIDEPMSESLVFRFIETQ 861
Query: 1190 ALLLCPVCPHVAEHVYQLLGKD-LIQN 1215
L+L P+CPH+AE+++QLLGKD LI N
Sbjct: 862 MLILSPICPHIAEYIWQLLGKDGLIVN 888
|
Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q10490|SYLC_SCHPO Putative leucine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lrs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/552 (40%), Positives = 312/552 (56%), Gaps = 107/552 (19%)
Query: 654 LPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFK 713
+ Y+ VPII+ P YG++CA + +KLKIQS D +L +AKEL Y + FY G M++G++
Sbjct: 448 MKYEAVPIIRTPSYGDMCAEFLCKKLKIQSPKDVKQLAQAKELAYKECFYQGTMIIGKYS 507
Query: 714 GKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDY 773
G+KV+ K ++K++ G+A +Y P V S S DD
Sbjct: 508 GEKVETAKPKVRKELIDQGLAF---------VYNEPE------------GQVISRSGDD- 545
Query: 774 AALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRR 833
C+VALCDQW+LDYGE +WKA E+ L +NT+ EVR
Sbjct: 546 ----------------------CIVALCDQWFLDYGEASWKAVTEKALDRLNTFSPEVRN 583
Query: 834 NFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 893
F +L+WL ++AC+R+YGLGT+LPWD Q+L+ESL+DSTIYMAYYT+ HLL + G+
Sbjct: 584 GFLKTLDWLSQWACARSYGLGTRLPWDPQFLVESLTDSTIYMAYYTICHLLHSDVY-GKV 642
Query: 894 GNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLI 953
ALNIK E +TPEVWD+V F+ AP P + L + REFQY+YP D+R SGKDL+
Sbjct: 643 PGALNIKPEQMTPEVWDHV-FRQAPKPKNTSISDEALARLCREFQYFYPFDIRASGKDLV 701
Query: 954 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNH 1013
NHLTF +Y HTAI+ + + WP+GIRANGHLL+N K +
Sbjct: 702 PNHLTFCLYTHTAIFDE--KYWPKGIRANGHLLMNGEK------------------MSKS 741
Query: 1014 LTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
F+ +H A K ++ L L +A
Sbjct: 742 TGNFMTLHEA-----------------------TKKFGADATRLALADA----------- 767
Query: 1074 CLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEM 1133
GD+V+DANF E++A++ ILRLYT W KE++ LRTG + F+DKVF +E+
Sbjct: 768 -----GDTVDDANFEEALANSAILRLYTQEAWCKEMMENLDNLRTGPYN-FHDKVFENEI 821
Query: 1134 NLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLL 1193
N I+ + + ++ LFK AL++ F++LQ ARD YRE+T A+ MHR LV R++E Q LLL
Sbjct: 822 NQLIESSREAFSATLFKAALKSCFYDLQNARDWYREVT-ADRKMHRDLVCRWIETQVLLL 880
Query: 1194 CPVCPHVAEHVY 1205
PH +EH++
Sbjct: 881 ATFAPHWSEHIW 892
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q54N83|SYLC_DICDI Leucine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 231/563 (41%), Positives = 311/563 (55%), Gaps = 109/563 (19%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++ VPII +P Y N AV Y+ L I+SQND+ L +AK+L Y KGF DG+M VG +
Sbjct: 419 VLPFEVVPIIDIPGYSNESAVRAYKDLGIKSQNDRALLDQAKDLCYQKGFNDGVMSVGPY 478
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
G+KV EVKK+++ ++ G A V Y+ P + V S S D+
Sbjct: 479 AGRKVSEVKKIIKDEMVASGQA---------VDYSEP------------TSKVVSRSGDE 517
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEP--TWKAAAEQCLANMNTYHDE 830
CVVAL DQWY++YG+ WK + L +M Y E
Sbjct: 518 -----------------------CVVALSDQWYINYGDDDIEWKNQTIKQLESMEFYSAE 554
Query: 831 VRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 890
++ F +L W++++ACSR++GLGT LPWDE++LIESLSDSTIYMA+YTVAHLLQG
Sbjct: 555 TKKKFEIALGWMNQWACSRSFGLGTHLPWDEKFLIESLSDSTIYMAFYTVAHLLQGDVNG 614
Query: 891 GENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 950
+ G+A I + +T WDYV P+P C V + KL +++EF YWYPVD+R SG
Sbjct: 615 SKPGSA-GITPKQMTSACWDYVLM-GKPYPEGCEVSEEKLKELKKEFTYWYPVDIRVSGA 672
Query: 951 DLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLI 1010
DLIQNHLTFF+Y H AI+ E + P+ IRANG + LN K S
Sbjct: 673 DLIQNHLTFFLYTHAAIF--EKKFQPKSIRANGFVNLNGEK--------------MSKST 716
Query: 1011 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
N LT L+ + AK S ADG
Sbjct: 717 GNFLT--------------------------LVDSVAKFS-----------------ADG 733
Query: 1071 MRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFL 1130
R+ LAD+GDS+EDANFV+ A +L+L+T I+WV+E L + R+G D D +F
Sbjct: 734 TRVALADAGDSIEDANFVDQTAVTSLLKLHTQIQWVQETLDSIDKFRSGPLDRIQDTIFE 793
Query: 1131 SEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQA 1190
SE+N I E+E Y K F++AL FF+LQ ARD Y+ T + MH+ LVLRF+EVQA
Sbjct: 794 SEINNIIVESEKAYQKTNFRDALHLVFFDLQNARDHYKVTTLDQ--MHKDLVLRFIEVQA 851
Query: 1191 LLLCPVCPHVAEHVYQLLGKDLI 1213
LL+ P+ PH A+ ++ +LGK I
Sbjct: 852 LLIYPIAPHFAQKLFNMLGKGNI 874
|
Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
| >sp|P26637|SYLC_YEAST Leucine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC60 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 222/564 (39%), Positives = 307/564 (54%), Gaps = 111/564 (19%)
Query: 654 LPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFK 713
+ ++ VPI+ +YG+L A + E+ KIQS DK+ L EAK++ Y + +Y G M+ G +K
Sbjct: 440 IDHEIVPIMHTEKYGDLTAKAIVEEKKIQSPKDKNLLAEAKKIAYKEDYYTGTMIYGPYK 499
Query: 714 GKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDY 773
G+KV++ K + K D+I + +Y P + V S S DD
Sbjct: 500 GEKVEQAKNKV--KADMIAAG-------EAFVYNEPE------------SQVMSRSGDD- 537
Query: 774 AALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRR 833
C+V+L DQWY+DYGE +WK A +CL M + EV+
Sbjct: 538 ----------------------CIVSLEDQWYVDYGEESWKKQAIECLEGMQLFAPEVKN 575
Query: 834 NFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 893
F L+WL +A RTYGLGT+LPWDE++L+ESLSDSTIY ++YT+AHLL + E
Sbjct: 576 AFEGVLDWLKNWAVCRTYGLGTRLPWDEKYLVESLSDSTIYQSFYTIAHLLFKDYYGNEI 635
Query: 894 GNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLI 953
G L I A+ +T EV+DY+F + +P L +RREF+Y+
Sbjct: 636 G-PLGISADQMTDEVFDYIF-QHQDDVKNTNIPLPALQKLRREFEYF------------- 680
Query: 954 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNH 1013
+P + +G DLI NH
Sbjct: 681 ---------------------YPLDVSISG-----------------------KDLIPNH 696
Query: 1014 LTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
LTFFIY H A++ + WP+GIRANGHL+LN++KMSKS GNF+TL + V+KF AD R+
Sbjct: 697 LTFFIYTHVALFPKK--FWPKGIRANGHLMLNNSKMSKSTGNFMTLEQTVEKFGADAARI 754
Query: 1074 CLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEM 1133
AD+GD+VEDANF ES A+A ILRL+ EW +EI +S LRTG F D F EM
Sbjct: 755 AFADAGDTVEDANFDESNANAAILRLFNLKEWAEEI-TKESNLRTGEITDFFDIAFEHEM 813
Query: 1134 NLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLL 1193
N I++T + Y +K AL+ G F+ QAARD YRE A G MH+ L+ R++E QALLL
Sbjct: 814 NALIEKTYEQYALTNYKNALKYGLFDFQAARDYYRE---ASGVMHKDLIARYIETQALLL 870
Query: 1194 CPVCPHVAEHVY-QLLGKDL-IQN 1215
P+ PH AE++Y ++LG +QN
Sbjct: 871 APIAPHFAEYIYREVLGNQTSVQN 894
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
| >sp|P10857|SYLC_NEUCR Leucine--tRNA ligase, cytoplasmic OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=leu-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 323 bits (829), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 219/610 (35%), Positives = 309/610 (50%), Gaps = 127/610 (20%)
Query: 659 VPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQ 718
V +I+ P +L A + +KLKI S D +L EAKEL Y +GFY GIM G+FKG+KV+
Sbjct: 465 VSVIKTPT-SDLLAPYLVKKLKINSPKDAKQLLEAKELAYKEGFYQGIMNYGDFKGEKVE 523
Query: 719 EVK-KLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALV 777
K K+ Q+ ID + Y+ P E+K V S S D+
Sbjct: 524 TAKPKVRQQLID----------AGDAFAYSEP-----ENK-------VVSRSGDE----- 556
Query: 778 DLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLAN-----MNTYHDEVR 832
C VAL DQWY+DYGE +W+ + N +NTY+ + +
Sbjct: 557 ------------------CSVALMDQWYIDYGEDSWRTVLYDYVENKDGKGINTYYADTQ 598
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
F + WL ++AC+RTYGLG+KLPWD +L+ESLSDST+YMAYYTVAH L F E
Sbjct: 599 HAFKGVIGWLKQWACARTYGLGSKLPWDPNFLVESLSDSTVYMAYYTVAHWLHRDLFGRE 658
Query: 893 NGNALNIKAEDLTPEVWDYVFFK---AAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSG 949
G NI A+ + EVWDY+F + + K +PK LD MRREFQY+YP+D+R SG
Sbjct: 659 KGKG-NIGADQMIDEVWDYIFCRTELSDHLVTKSGIPKETLDSMRREFQYFYPLDIRVSG 717
Query: 950 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDL 1009
KDLI NHLTF++Y H A++ E WP+ +RANGHL LN K + ++ F D+
Sbjct: 718 KDLIPNHLTFWLYNHIALF--PREYWPKSVRANGHLQLNGEK-MSKSTGNFMT---LDDV 771
Query: 1010 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSAD 1069
++ + + A GD GI S+ NF+
Sbjct: 772 VKKYGADAARVALADAGD-------GI---------------SDSNFV------------ 797
Query: 1070 GMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129
E +AD ILR YT EW++E L +S LRTG +SF D +F
Sbjct: 798 -------------------EDVADNTILRFYTNKEWIEETLKDES-LRTGELNSFQDALF 837
Query: 1130 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG-GMHRTLVLRFVEV 1188
+EMN + E HY + +K AL+ ++ ARD YRE AA G +H+ LV +++ +
Sbjct: 838 DNEMNALVNEARKHYEETSYKLALKAAHYDFLNARDMYREACAAAGIPLHKDLVTKYIRL 897
Query: 1189 QALLLCPVCPHVAEHVYQ-LLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL 1247
QAL++ P+ PH A++V+Q LG+ I A W + P P A ++
Sbjct: 898 QALVITPIAPHWADYVWQECLGEPK---------SIQFARWPEVPAANPALTAARDYVRT 948
Query: 1248 NSAKMSKSEG 1257
S+ ++ +E
Sbjct: 949 TSSAINSAEA 958
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
| >sp|C4V8L1|SYLC_NOSCE Probable leucine--tRNA ligase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100842 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 195/555 (35%), Positives = 277/555 (49%), Gaps = 104/555 (18%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
K+F TFP+PYMNG+LHLGH +S+SK +F + L+G VLFP FHCTGMPI A A KL
Sbjct: 32 KYFITFPYPYMNGKLHLGHLYSISKADFMSYYKELQGFNVLFPLAFHCTGMPIAALAKKL 91
Query: 149 KREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLG 208
E+E GKK+ K +I+Q+LG
Sbjct: 92 GEELE-------------------------------GKKTDISTK--------EIIQNLG 112
Query: 209 LEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRL 268
D + F D HW+ FP L + L++ G ++DWRR+F+TTD N ++DSFVRWQF L
Sbjct: 113 FND--VMPFTDPVHWIKTFPKLCISSLKTFGANIDWRRSFVTTDINKYYDSFVRWQFFNL 170
Query: 269 RDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRL------------VK 316
++ + +GKR++++ P D Q C+DHDR GE + P + K L K
Sbjct: 171 KELGYLSFGKRHSIYCPLDKQMCLDHDRRKGENIKPVRQIMFKFHLHDKILLVRQNSIGK 230
Query: 317 PYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRP 376
PY KL C S L + + + ++ Y ++ + K +++ L+
Sbjct: 231 PY--KLVCGKS----LEVVSFKYNNTSFLAEKIIFDNLKY-QINNVKYKESLVLSMDLKD 283
Query: 377 ETMYGQTNAWVR---PDMAYIAFTTATGEVFVCTERSARN----------MAYQGFTEVE 423
Y TN V ++ + T + E A N + +G E
Sbjct: 284 GLTYDGTNIEVEVIEKNILVVKTDTKSDVELYEKEIKALNEIEETLFTLSTSSEGIVESV 343
Query: 424 GKINV-----LLRLTG----------QVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQC 468
K++V LL T +V RSG CVV+L DQWY+DY WK+ ++C
Sbjct: 344 AKLSVENTKDLLVQTKHFISVYIPEKEVISRSGGICVVSLLDQWYIDYSNEKWKSKVKKC 403
Query: 469 LANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTV 528
L N+ D R A ++W++++ SR++GLGTK+PWD Q+LI+SLSDSTIYMA+YTV
Sbjct: 404 LDNLECGPD-TRSMLYAGIDWVNKWGFSRSFGLGTKIPWDTQYLIDSLSDSTIYMAFYTV 462
Query: 529 AHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPK--AKLDIM---RR 583
HLL F G + L+ +VWDY+ F K VP+ LD++ R
Sbjct: 463 KHLL----FEDLEGKLEIFPSNKLSNDVWDYI------FAGKDLVPELYGYLDLLEKCRN 512
Query: 584 EFQYWYPVDLRCSGK 598
FQY+YPVDLR SGK
Sbjct: 513 NFQYFYPVDLRVSGK 527
|
Nosema ceranae (strain BRL01) (taxid: 578460) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
| >sp|B7XHP6|SYLC_ENTBH Probable leucine--tRNA ligase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_21702 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 190/584 (32%), Positives = 276/584 (47%), Gaps = 72/584 (12%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
KFF TFP+PYMNG+LHLGH FS+SK + + ++G VLFPFGFHCTGMPI A A KL
Sbjct: 33 KFFITFPYPYMNGKLHLGHLFSISKADIFSYYKEMQGFNVLFPFGFHCTGMPISASAKKL 92
Query: 149 KREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLG 208
K E+ + G + D V KS G K K +
Sbjct: 93 KMELANEG---------------EIDISVVNILKSLGFKLYCSGKCTNV----------- 126
Query: 209 LEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRL 268
+ I +F D HW FP L ++DWRR+FITTD NP++DSFV++QF +L
Sbjct: 127 ---ECICQFTDPFHWCRTFPKYCKASLVKYDANIDWRRSFITTDVNPYYDSFVKYQFTKL 183
Query: 269 RDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSK 328
++ + I +GKRY++F P DNQ C+DHDR GEGV KP P L L +
Sbjct: 184 KNCNYISFGKRYSIFCPVDNQICLDHDRRKGEGV-------------KPIPIVLAILGNN 230
Query: 329 PVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAW-- 386
+ V + + ++ +I S + V++ + Y N +
Sbjct: 231 ILVPVQEKDLNTIIDNNVEIVTQKEIQWIQFSI--NNDVYVAEEDIYNNIKYQVENVYKI 288
Query: 387 -------VRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCI- 438
+ P + Y+ ++ + N+ + + K+ ++ VC
Sbjct: 289 KTVTLDGLYPYIIYVNSNIRKSKINNKNKILTENIYNKLIADRHEKMELIKYDKFIVCYV 348
Query: 439 -------RSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLH 491
RSG +C VAL DQW+LDY P WK + CL + T + + +LNW++
Sbjct: 349 PEDTVISRSGGKCTVALMDQWFLDYSNPEWKEKTKICLNKL-TASKDTKEKLELALNWIN 407
Query: 492 EYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAED 551
++ SR +GLGTK P+D LI+SLSDSTIYMA+YTV HLL F+ G +
Sbjct: 408 KWGFSRNFGLGTKFPYDNSVLIDSLSDSTIYMAFYTVKHLL----FKDLEGKEPLFPIKY 463
Query: 552 LTPEVWDYVFFKSAP---FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK--VSTKLPWD 606
+ W+YVF S P K ++ R +F Y+YP+DLR SGK ++ L +
Sbjct: 464 MGYAFWEYVFGNSNEINFIDPNDLNAKKIVEDARSQFNYFYPIDLRVSGKDLINNHLIFF 523
Query: 607 EQWLIESLSDSTIYMAYYTVAHLLQGG-TFRGENGNALNINCVI 649
+ ++ YT HLL G GN L+++ +
Sbjct: 524 LMNHVAIFKENNWPKRIYTNGHLLLNGLKMSKSEGNFLSVDTAL 567
|
Enterocytozoon bieneusi (strain H348) (taxid: 481877) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1618 | ||||||
| 328714927 | 1194 | PREDICTED: leucyl-tRNA synthetase, cytop | 0.281 | 0.381 | 0.581 | 0.0 | |
| 380013183 | 1181 | PREDICTED: leucine--tRNA ligase, cytopla | 0.281 | 0.386 | 0.574 | 1e-178 | |
| 91081601 | 1179 | PREDICTED: similar to leucyl-tRNA synthe | 0.280 | 0.385 | 0.568 | 1e-174 | |
| 270006203 | 1177 | hypothetical protein TcasGA2_TC008372 [T | 0.280 | 0.385 | 0.568 | 1e-174 | |
| 194855572 | 1182 | GG24431 [Drosophila erecta] gi|190660441 | 0.281 | 0.384 | 0.558 | 1e-171 | |
| 195471089 | 1182 | GE14851 [Drosophila yakuba] gi|194173939 | 0.280 | 0.384 | 0.555 | 1e-170 | |
| 157113359 | 1182 | leucyl-tRNA synthetase [Aedes aegypti] g | 0.280 | 0.384 | 0.548 | 1e-167 | |
| 357614744 | 1144 | hypothetical protein KGM_08001 [Danaus p | 0.281 | 0.397 | 0.541 | 1e-166 | |
| 195434889 | 1204 | GK14672 [Drosophila willistoni] gi|19416 | 0.281 | 0.378 | 0.546 | 1e-166 | |
| 198474470 | 1180 | GA17300 [Drosophila pseudoobscura pseudo | 0.280 | 0.384 | 0.551 | 1e-166 |
| >gi|328714927|ref|XP_001944432.2| PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/561 (58%), Positives = 392/561 (69%), Gaps = 105/561 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++P+PII++P++GNLCAVTVY++LKIQSQNDK+KLQ AKE VYLK FY+GI++VGEF
Sbjct: 430 VLPFEPIPIIEIPDFGNLCAVTVYDELKIQSQNDKEKLQIAKEKVYLKAFYEGILIVGEF 489
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
KG+KVQ+VKK LQKK+ + +VIY P +I G
Sbjct: 490 KGQKVQDVKKALQKKLT---------DSKEAVIYYEPEKTIMSRSG-------------- 526
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
DE CV+ALCDQWYLDYGE WK+AAE L NMNTYH+EVR
Sbjct: 527 --------------------DE-CVIALCDQWYLDYGESEWKSAAELALKNMNTYHEEVR 565
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
+NF + LNWLHEYACSRTYGLGTKLPWDE WLIESLSDSTIYMAYYT+AH LQ GTF+GE
Sbjct: 566 KNFTSCLNWLHEYACSRTYGLGTKLPWDEYWLIESLSDSTIYMAYYTIAHFLQEGTFKGE 625
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
NGN+ NIK E+LTPEVWDY+F +P +C++ K LD+M+ EF+YWYPVD
Sbjct: 626 NGNSYNIKPEELTPEVWDYIFLDNKSYPKQCKIDKKYLDVMKNEFEYWYPVD-------- 677
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
+R +G DLIQN
Sbjct: 678 --------------------------LRCSG-----------------------KDLIQN 688
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
HLTFFIY H AIW P++WP+ IRANGHLLLNSAKMSKS+GNF+TL EAV KFSADGMR
Sbjct: 689 HLTFFIYNHCAIWAKRPDLWPKSIRANGHLLLNSAKMSKSDGNFMTLEEAVNKFSADGMR 748
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
CLAD+GD++EDANFVE+MADAGILRLYTFIEWVKE+LA+++TLR G DSF D VF+SE
Sbjct: 749 FCLADAGDAIEDANFVENMADAGILRLYTFIEWVKEVLASEATLRNGPTDSFTDTVFMSE 808
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAE--GG--MHRTLVLRFVEV 1188
+NLKI++T ++Y K+LFKEALRTGFFELQAARD+YREL GG MH+ L+L F++V
Sbjct: 809 INLKIQQTGEYYEKLLFKEALRTGFFELQAARDRYRELCGNPELGGECMHKDLILHFIKV 868
Query: 1189 QALLLCPVCPHVAEHVYQLLG 1209
Q +LL P+CPHV+EHVYQLLG
Sbjct: 869 QTILLAPICPHVSEHVYQLLG 889
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380013183|ref|XP_003690646.1| PREDICTED: leucine--tRNA ligase, cytoplasmic [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 321/559 (57%), Positives = 385/559 (68%), Gaps = 103/559 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
+ PYDP+PII+VPE GNLCAVT+Y+KLKIQSQNDK KL EAKE+ YLKGFYDG++LVG++
Sbjct: 421 IFPYDPIPIIEVPELGNLCAVTLYDKLKIQSQNDKVKLLEAKEIAYLKGFYDGVLLVGQY 480
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
KG KVQ+VKK +QK++ G A VIY P ++ S S D+
Sbjct: 481 KGNKVQDVKKHVQKELINEGKA---------VIYYEPE------------KTIISRSNDE 519
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
CVVALC+QWYLDYGE TWK A + L N+NT+HDEV+
Sbjct: 520 -----------------------CVVALCNQWYLDYGEETWKKEAIEALNNLNTFHDEVK 556
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
+NF A LNWLHEYACSRTYGLGTKLPWDE WLIESLSDSTIYMAYYTVAHLLQGGTF+G+
Sbjct: 557 KNFMACLNWLHEYACSRTYGLGTKLPWDENWLIESLSDSTIYMAYYTVAHLLQGGTFKGD 616
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
N NIK +++T EVWDY+FFK FP K ++ K LD MRREF YWYPVD
Sbjct: 617 KPNTYNIKPDEMTSEVWDYIFFKDTKFP-KTKIKKEALDHMRREFNYWYPVD-------- 667
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
+R +G DLIQN
Sbjct: 668 --------------------------LRVSG-----------------------KDLIQN 678
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
HLTFFIY H AIW +PE+WP+GIRANGHLLLNS+KMSKSEGNFLTL EAV+KFSADGMR
Sbjct: 679 HLTFFIYNHIAIWSKQPELWPKGIRANGHLLLNSSKMSKSEGNFLTLAEAVEKFSADGMR 738
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
LCLADSGDS+EDANFVES A+AGILRLYTFIEWVKE+LA++ R G +FNDKVF SE
Sbjct: 739 LCLADSGDSIEDANFVESTANAGILRLYTFIEWVKEVLASKDIFRQGKPYTFNDKVFESE 798
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192
MN KI+ETE++Y+KML+KEAL+TGFFE QA RDKY +L+A + G+ L+++++E Q +L
Sbjct: 799 MNQKIRETEENYSKMLYKEALKTGFFEFQAVRDKYLQLSALD-GISWILIMKYIEFQIIL 857
Query: 1193 LCPVCPHVAEHVYQLLGKD 1211
L P+CPHV EHV+ L+GK+
Sbjct: 858 LSPICPHVTEHVWTLIGKE 876
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91081601|ref|XP_975388.1| PREDICTED: similar to leucyl-tRNA synthetase [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 318/559 (56%), Positives = 378/559 (67%), Gaps = 105/559 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++PVPI++VP++G L AVTVYEKLKIQSQND++KL EAKE+VYLKGFYDG+M+VGEF
Sbjct: 424 VLPFEPVPIVEVPDFGKLSAVTVYEKLKIQSQNDREKLLEAKEMVYLKGFYDGVMIVGEF 483
Query: 713 KGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
KGKK+Q++KK LQK ID + +VIY P SI G
Sbjct: 484 KGKKIQDIKKSLQKVLID----------KNEAVIYYEPEKSIISRSG------------- 520
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEV 831
DE CVVALCDQW+LDYGE +WK A + L MNTYH+EV
Sbjct: 521 ---------------------DE-CVVALCDQWFLDYGEESWKKLAHKVLDQMNTYHEEV 558
Query: 832 RRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRG 891
RRNF L+WL E+ACSRTYGLG+KLPWDEQWLIESLSDSTIY AYY+VAHLLQG +FRG
Sbjct: 559 RRNFIGCLDWLREHACSRTYGLGSKLPWDEQWLIESLSDSTIYNAYYSVAHLLQGNSFRG 618
Query: 892 ENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKD 951
N+L IK E +TPEVWDY+FFK APFP K + K LD+M+ EF YWYPVD+R SGKD
Sbjct: 619 NKPNSLGIKPEQMTPEVWDYIFFKNAPFPAKSGIKKESLDLMKHEFNYWYPVDVRVSGKD 678
Query: 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQ 1011
L+QNHLT+FIY H AIW +E + WPRG+RANGHLLLNSAK
Sbjct: 679 LVQNHLTYFIYNHCAIWPEEEDKWPRGVRANGHLLLNSAK-------------------- 718
Query: 1012 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
+++G+ L S + K FSADG
Sbjct: 719 -----------------------MSKSDGNFLTLSEAVEK--------------FSADGT 741
Query: 1072 RLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLS 1131
RLCLAD+GDS+EDANFVESMADAGILRLYTFIEWVKEIL + LRTG +FND+VF S
Sbjct: 742 RLCLADAGDSIEDANFVESMADAGILRLYTFIEWVKEILENKGQLRTGPATTFNDEVFQS 801
Query: 1132 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1191
E+NLKIKET++ Y KMLFKEALR+GFFELQ+ RDKYREL GMH L++RF+EVQA+
Sbjct: 802 EINLKIKETDEFYGKMLFKEALRSGFFELQSVRDKYRELCLE--GMHAELIVRFIEVQAI 859
Query: 1192 LLCPVCPHVAEHVYQLLGK 1210
LL P+CPHV+E V++LLGK
Sbjct: 860 LLAPICPHVSEQVWKLLGK 878
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270006203|gb|EFA02651.1| hypothetical protein TcasGA2_TC008372 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 318/559 (56%), Positives = 378/559 (67%), Gaps = 105/559 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++PVPI++VP++G L AVTVYEKLKIQSQND++KL EAKE+VYLKGFYDG+M+VGEF
Sbjct: 422 VLPFEPVPIVEVPDFGKLSAVTVYEKLKIQSQNDREKLLEAKEMVYLKGFYDGVMIVGEF 481
Query: 713 KGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
KGKK+Q++KK LQK ID + +VIY P SI G
Sbjct: 482 KGKKIQDIKKSLQKVLID----------KNEAVIYYEPEKSIISRSG------------- 518
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEV 831
DE CVVALCDQW+LDYGE +WK A + L MNTYH+EV
Sbjct: 519 ---------------------DE-CVVALCDQWFLDYGEESWKKLAHKVLDQMNTYHEEV 556
Query: 832 RRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRG 891
RRNF L+WL E+ACSRTYGLG+KLPWDEQWLIESLSDSTIY AYY+VAHLLQG +FRG
Sbjct: 557 RRNFIGCLDWLREHACSRTYGLGSKLPWDEQWLIESLSDSTIYNAYYSVAHLLQGNSFRG 616
Query: 892 ENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKD 951
N+L IK E +TPEVWDY+FFK APFP K + K LD+M+ EF YWYPVD+R SGKD
Sbjct: 617 NKPNSLGIKPEQMTPEVWDYIFFKNAPFPAKSGIKKESLDLMKHEFNYWYPVDVRVSGKD 676
Query: 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQ 1011
L+QNHLT+FIY H AIW +E + WPRG+RANGHLLLNSAK
Sbjct: 677 LVQNHLTYFIYNHCAIWPEEEDKWPRGVRANGHLLLNSAK-------------------- 716
Query: 1012 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
+++G+ L S + K FSADG
Sbjct: 717 -----------------------MSKSDGNFLTLSEAVEK--------------FSADGT 739
Query: 1072 RLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLS 1131
RLCLAD+GDS+EDANFVESMADAGILRLYTFIEWVKEIL + LRTG +FND+VF S
Sbjct: 740 RLCLADAGDSIEDANFVESMADAGILRLYTFIEWVKEILENKGQLRTGPATTFNDEVFQS 799
Query: 1132 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1191
E+NLKIKET++ Y KMLFKEALR+GFFELQ+ RDKYREL GMH L++RF+EVQA+
Sbjct: 800 EINLKIKETDEFYGKMLFKEALRSGFFELQSVRDKYRELCLE--GMHAELIVRFIEVQAI 857
Query: 1192 LLCPVCPHVAEHVYQLLGK 1210
LL P+CPHV+E V++LLGK
Sbjct: 858 LLAPICPHVSEQVWKLLGK 876
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194855572|ref|XP_001968574.1| GG24431 [Drosophila erecta] gi|190660441|gb|EDV57633.1| GG24431 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 311/557 (55%), Positives = 370/557 (66%), Gaps = 102/557 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLPY+P+PII+VP G L AV YE LKIQSQNDKDKL EAKE+ YLK FYDG+MLVGEF
Sbjct: 423 VLPYEPIPIIEVPTLGKLSAVHAYETLKIQSQNDKDKLAEAKEMCYLKSFYDGVMLVGEF 482
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
G+K+Q+VKK LQK++ + + +Y P +I S S D+
Sbjct: 483 AGRKIQDVKKDLQKRL---------VDANEADVYYEPEKTIM------------SRSADE 521
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
CVVALC+QWYL+YGEP W+A A + L M T+H+E R
Sbjct: 522 -----------------------CVVALCNQWYLNYGEPVWQAQATKILQGMETFHEEAR 558
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
NF A LNWLHEYACSRTYGLGTKLPWD++WLIESLSDSTIYMA+YTV HLLQGGTFRGE
Sbjct: 559 NNFEACLNWLHEYACSRTYGLGTKLPWDDKWLIESLSDSTIYMAFYTVVHLLQGGTFRGE 618
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
IK D+T E+WDY+FFK P P K + + L ++RREF+YWYP+D
Sbjct: 619 KPGPFGIKPSDMTDEIWDYIFFKETPLPKKTAIKQEHLAVLRREFEYWYPMD-------- 670
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
+R +G DLIQN
Sbjct: 671 --------------------------LRVSG-----------------------KDLIQN 681
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
HLTF +Y H AIW ++ WP+G+R NGHLLLNSAKMSKS+GNFLTLTEAV KFSADGMR
Sbjct: 682 HLTFCLYNHAAIWPNDENKWPKGMRVNGHLLLNSAKMSKSDGNFLTLTEAVDKFSADGMR 741
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
LCLAD+GDSVEDANFVES ADAGILRLYTFIEWVKE+L T+S+LR G+ FND+VFLSE
Sbjct: 742 LCLADAGDSVEDANFVESTADAGILRLYTFIEWVKEMLDTRSSLRKGTDKIFNDQVFLSE 801
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192
+NLK ++T+D+Y KMLFKEALR+GF+ELQ ARDKYREL A GMH LVL F+ QALL
Sbjct: 802 LNLKTQQTDDNYRKMLFKEALRSGFYELQLARDKYRELCGAH-GMHEDLVLEFIRRQALL 860
Query: 1193 LCPVCPHVAEHVYQLLG 1209
+ P+CPH+AEHV+ LLG
Sbjct: 861 VSPICPHMAEHVWGLLG 877
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195471089|ref|XP_002087838.1| GE14851 [Drosophila yakuba] gi|194173939|gb|EDW87550.1| GE14851 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/558 (55%), Positives = 373/558 (66%), Gaps = 104/558 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLPY+P+PII+VP G L AV YE LKIQSQNDK+KL EAKE+ YLK FYDG+MLVGEF
Sbjct: 423 VLPYEPIPIIEVPTLGKLSAVHAYETLKIQSQNDKEKLAEAKEMCYLKSFYDGVMLVGEF 482
Query: 713 KGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
G+K+Q+VKK LQK+ +D + + +Y P +I S S D
Sbjct: 483 AGRKIQDVKKDLQKRLVD----------ANEADVYYEPEKTIM------------SRSAD 520
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEV 831
+ CVVALC+QWYL+YGEP W+A A + L M T+H+E
Sbjct: 521 E-----------------------CVVALCNQWYLNYGEPVWQAQAIKILQGMETFHEEA 557
Query: 832 RRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRG 891
R NF A LNWLHEYACSRTYGLGTKLPWD++WLIESLSDSTIYMA+YTV HLLQGGTFRG
Sbjct: 558 RNNFEACLNWLHEYACSRTYGLGTKLPWDDKWLIESLSDSTIYMAFYTVVHLLQGGTFRG 617
Query: 892 ENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKD 951
E IK D+T E+WDY+FFK P P K + + L ++RREF+YWYP+D
Sbjct: 618 EKPGPFGIKPTDMTDEIWDYIFFKETPLPKKTAIKQEHLAVLRREFEYWYPMD------- 670
Query: 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQ 1011
+R +G DLIQ
Sbjct: 671 ---------------------------LRVSG-----------------------KDLIQ 680
Query: 1012 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
NHLTF +Y H AIW ++ WP+G+R NGHLLLNSAKMSKS+GNFLTLTEAV KFSADGM
Sbjct: 681 NHLTFCLYNHAAIWPNDENKWPKGMRVNGHLLLNSAKMSKSDGNFLTLTEAVDKFSADGM 740
Query: 1072 RLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLS 1131
RLCLAD+GDSVEDANFVES ADAGILRLYTFIEWVKE+L T+S+LR G+ +FND+VFLS
Sbjct: 741 RLCLADAGDSVEDANFVESTADAGILRLYTFIEWVKEMLDTRSSLRKGTDKTFNDQVFLS 800
Query: 1132 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1191
E+NLK ++T+++Y KMLFKEALR+GF+ELQ ARDKYREL A+ GMH LVL F+ QAL
Sbjct: 801 ELNLKTQQTDENYRKMLFKEALRSGFYELQLARDKYRELCGAQ-GMHEDLVLEFISRQAL 859
Query: 1192 LLCPVCPHVAEHVYQLLG 1209
L+ P+CPH+AEHV+ LLG
Sbjct: 860 LVSPICPHMAEHVWGLLG 877
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157113359|ref|XP_001657794.1| leucyl-tRNA synthetase [Aedes aegypti] gi|108877784|gb|EAT42009.1| AAEL006415-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-167, Method: Compositional matrix adjust.
Identities = 306/558 (54%), Positives = 363/558 (65%), Gaps = 104/558 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++P+PII+VP G L AV Y+K K+QSQND+DKLQEAKELVYLKGFYDG++LVGE
Sbjct: 421 VLPFEPIPIIEVPGLGKLSAVYAYDKFKVQSQNDRDKLQEAKELVYLKGFYDGVLLVGEH 480
Query: 713 KGKKVQEVKK-LLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
GKKVQ+VKK L Q +D + + +Y P +I G
Sbjct: 481 AGKKVQDVKKDLKQYLVD----------RNEADVYYEPEKTIMSRSG------------- 517
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEV 831
++CVVALC+QWY++YGE W+ L M YHDEV
Sbjct: 518 ----------------------DVCVVALCNQWYINYGEEKWQKTTTDHLHTMQVYHDEV 555
Query: 832 RRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRG 891
RNF L+WLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA+YTV HLLQ G+FRG
Sbjct: 556 ARNFEHCLDWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAFYTVVHLLQDGSFRG 615
Query: 892 ENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKD 951
E + L I A D+T EVWDY+FFK A P ++ KA LD++++EF YWYPVD
Sbjct: 616 EKPSPLGITAADMTAEVWDYIFFKEAKAPGSTKIKKAHLDLLKKEFNYWYPVD------- 668
Query: 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQ 1011
+R +G DLIQ
Sbjct: 669 ---------------------------LRVSG-----------------------KDLIQ 678
Query: 1012 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
NHLTFF+Y H A+W ++ WPRGIR NGHLLLNSAKMSKSEGNFLTL EA+ KFSADG
Sbjct: 679 NHLTFFLYNHVAMWPNDSSKWPRGIRCNGHLLLNSAKMSKSEGNFLTLYEAIAKFSADGT 738
Query: 1072 RLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLS 1131
RLCLAD+GDS+EDANFVES ADAGILRLYTFIEWVKE LA ++ LR G D ND VF+S
Sbjct: 739 RLCLADAGDSIEDANFVESTADAGILRLYTFIEWVKETLAAKAMLRKGPLDDLNDAVFMS 798
Query: 1132 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1191
EMNLK+KET+++Y KML+KEALRTGFFE Q+ARDKYREL + GMH LV+ F+ QAL
Sbjct: 799 EMNLKVKETDEYYQKMLYKEALRTGFFEFQSARDKYRELCGS-NGMHVDLVMEFIRRQAL 857
Query: 1192 LLCPVCPHVAEHVYQLLG 1209
L+ P+CPHVAEHV+Q LG
Sbjct: 858 LIAPICPHVAEHVWQQLG 875
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357614744|gb|EHJ69245.1| hypothetical protein KGM_08001 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-166, Method: Compositional matrix adjust.
Identities = 303/560 (54%), Positives = 376/560 (67%), Gaps = 105/560 (18%)
Query: 651 FQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVG 710
+ V+P+ PV I+++PE+GNL AV +Y+KLKIQSQNDKDKL +AKE+ YLKGFYDG++LVG
Sbjct: 385 YMVMPFKPVSILEIPEFGNLTAVFLYDKLKIQSQNDKDKLTQAKEMAYLKGFYDGVLLVG 444
Query: 711 EFKGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDS 769
++KG+K+Q+VKK LQ++ ID + +VIY P +I G
Sbjct: 445 DYKGEKIQDVKKKLQQRLID----------DNSAVIYYEPEKTIISRSG----------- 483
Query: 770 PDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHD 829
DE CVVALC+QWYLDYG WK AE+ LA MNTYHD
Sbjct: 484 -----------------------DE-CVVALCNQWYLDYGNAEWKGQAEKALAAMNTYHD 519
Query: 830 EVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTF 889
EVR+NF A+L WLHEYACSRTYGLGTKLPWD QW+IESLSDSTIY AYYT++H LQG +F
Sbjct: 520 EVRKNFQATLKWLHEYACSRTYGLGTKLPWDTQWVIESLSDSTIYNAYYTISHYLQGDSF 579
Query: 890 RGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSG 949
RG N L IK E+++ EVWDY+FFK AP P ++ K KLD+M++ FQ+WYPVDLR SG
Sbjct: 580 RGNVENDLKIKPEEMSIEVWDYIFFKDAPIPKNTKISKNKLDLMKKSFQFWYPVDLRVSG 639
Query: 950 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDL 1009
KDLIQNHLTF+IY H A+W E + WP+GIRANGHL+LNSAK
Sbjct: 640 KDLIQNHLTFYIYNHCAMWEKEEDKWPKGIRANGHLMLNSAK------------------ 681
Query: 1010 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSAD 1069
+++G+ L S + K FSAD
Sbjct: 682 -------------------------MSKSDGNFLTLSESIDK--------------FSAD 702
Query: 1070 GMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129
GMRL LAD+GDSVEDANFVES ADA ILRLYTFIEWVKE++ T+S RTG + F+DKVF
Sbjct: 703 GMRLTLADAGDSVEDANFVESTADAAILRLYTFIEWVKEVMVTKSNFRTGEYN-FHDKVF 761
Query: 1130 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQ 1189
+SEMN KI +T+D+Y K+LFKEAL+TGFFELQAARDKYREL +EGGMH +L+ +++ Q
Sbjct: 762 VSEMNTKIIQTDDNYNKLLFKEALKTGFFELQAARDKYREL-CSEGGMHESLITQYISTQ 820
Query: 1190 ALLLCPVCPHVAEHVYQLLG 1209
A L+ P+CPHVAEHV++LLG
Sbjct: 821 AKLISPICPHVAEHVWELLG 840
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195434889|ref|XP_002065434.1| GK14672 [Drosophila willistoni] gi|194161519|gb|EDW76420.1| GK14672 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 305/558 (54%), Positives = 368/558 (65%), Gaps = 102/558 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLPY P+ II VP GNL AV Y+ LKIQSQNDKDKL EAKE+ YLK FYDG+MLVG +
Sbjct: 443 VLPYAPISIIDVPTLGNLSAVYAYDTLKIQSQNDKDKLAEAKEMCYLKSFYDGVMLVGPY 502
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
G+K+Q++KK LQK++ V K + IY P ++ S S D+
Sbjct: 503 TGRKIQDIKKDLQKQL----VDAK-----EADIYYEPE------------KTIISRSADE 541
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
CVVALC+QWYL+YGEP W+A A + L +M T+H+E R
Sbjct: 542 -----------------------CVVALCNQWYLNYGEPEWRAQATKILQDMETFHEEAR 578
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
NF A LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA+YTVAHLLQGGTFRGE
Sbjct: 579 NNFEACLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGTFRGE 638
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
IK D+TPEVWDY+FFK P P K + K L ++RREF+YWYP+DLR SGKDL
Sbjct: 639 KPGPFGIKPADMTPEVWDYIFFKETPLPKKTTIKKEHLAVLRREFEYWYPMDLRVSGKDL 698
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
IQNHLTF +Y H AIW ++ WP+G+R NGHLLLNS+K
Sbjct: 699 IQNHLTFCLYNHAAIWPNDDTKWPKGMRVNGHLLLNSSK--------------------- 737
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
+++G+ L S + K FSADGMR
Sbjct: 738 ----------------------MSKSDGNFLTLSEAVDK--------------FSADGMR 761
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
LCLAD+GDSVEDANFVES ADAGILRLYTFIEWVKE+LA QS+LR ++ +FNDKVFLSE
Sbjct: 762 LCLADAGDSVEDANFVESTADAGILRLYTFIEWVKEMLANQSSLRKSAEKTFNDKVFLSE 821
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192
+NLK K+T+++Y KMLFKEALR+GF+ELQ ARDKYREL A+ GMH LVL F+ QALL
Sbjct: 822 LNLKTKQTDENYKKMLFKEALRSGFYELQLARDKYRELCGAQ-GMHEDLVLEFIRRQALL 880
Query: 1193 LCPVCPHVAEHVYQLLGK 1210
+ P+CPH+A++V+ LLG+
Sbjct: 881 VAPICPHMADYVWSLLGQ 898
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198474470|ref|XP_001356702.2| GA17300 [Drosophila pseudoobscura pseudoobscura] gi|198138406|gb|EAL33767.2| GA17300 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 308/558 (55%), Positives = 363/558 (65%), Gaps = 104/558 (18%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VL Y+P PII+VP G LCAV Y LKIQSQNDKDKL EAKE+ YLK FYDGIMLVGEF
Sbjct: 421 VLNYEPFPIIEVPTLGKLCAVHAYNTLKIQSQNDKDKLAEAKEMCYLKSFYDGIMLVGEF 480
Query: 713 KGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
G KVQ+VKK LQKK +D + + +Y P +I S S D
Sbjct: 481 AGSKVQDVKKNLQKKMVD----------ANEAEVYYEPEKTIL------------SRSAD 518
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEV 831
+ CVVALC+QWY+ YGE WK A + L +M T+H+E
Sbjct: 519 E-----------------------CVVALCNQWYVTYGETVWKEQAFKILHDMETFHEEA 555
Query: 832 RRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRG 891
R NF A LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTV HL+QGG+ RG
Sbjct: 556 RNNFEACLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVVHLIQGGSLRG 615
Query: 892 ENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKD 951
EN I D+T EVWDY+FFK P P K + L ++RREF+YWYP+D
Sbjct: 616 ENPGPFGITPADMTSEVWDYIFFKETPPPKKSNIKLEHLAVLRREFEYWYPMD------- 668
Query: 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQ 1011
+R +G DLI
Sbjct: 669 ---------------------------LRVSG-----------------------KDLIN 678
Query: 1012 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
NHLTF +Y H AIW + WP+G+R NGHLLLNSAKMSKS+GNFLTLT+AV+KFSADGM
Sbjct: 679 NHLTFTLYNHAAIWPKDDTKWPKGMRVNGHLLLNSAKMSKSDGNFLTLTDAVEKFSADGM 738
Query: 1072 RLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLS 1131
RLCLAD+GDS+EDANFV S ADAGILRL+TFIEWVKE+L T+STLR G+ +FND+VFLS
Sbjct: 739 RLCLADAGDSIEDANFVVSTADAGILRLFTFIEWVKEMLETKSTLRKGAARTFNDQVFLS 798
Query: 1132 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1191
E+NLK ++T+D+Y KMLFKEALR+GF+ELQ ARDKYREL + GMH LVL F+ QAL
Sbjct: 799 ELNLKTQQTDDNYRKMLFKEALRSGFYELQLARDKYRELCGTQ-GMHVELVLEFIRRQAL 857
Query: 1192 LLCPVCPHVAEHVYQLLG 1209
L+ P+CPH+AEHV+ LLG
Sbjct: 858 LVAPICPHMAEHVWGLLG 875
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1618 | ||||||
| UNIPROTKB|B4DJ10 | 1122 | LARS "Leucine--tRNA ligase, cy | 0.166 | 0.240 | 0.621 | 2e-251 | |
| UNIPROTKB|F1RM15 | 1136 | LARS "Uncharacterized protein" | 0.173 | 0.247 | 0.593 | 6.3e-250 | |
| FB|FBgn0053123 | 1182 | CG33123 [Drosophila melanogast | 0.203 | 0.278 | 0.537 | 1.2e-248 | |
| UNIPROTKB|F1PZP6 | 1176 | LARS "Uncharacterized protein" | 0.184 | 0.253 | 0.58 | 3e-248 | |
| UNIPROTKB|E1C2I9 | 1177 | LARS "Uncharacterized protein" | 0.184 | 0.253 | 0.588 | 4.2e-247 | |
| UNIPROTKB|Q9P2J5 | 1176 | LARS "Leucine--tRNA ligase, cy | 0.184 | 0.253 | 0.576 | 6.5e-247 | |
| UNIPROTKB|A6QLR2 | 1176 | LARS "Uncharacterized protein" | 0.184 | 0.253 | 0.58 | 7.6e-244 | |
| MGI|MGI:1913808 | 1178 | Lars "leucyl-tRNA synthetase" | 0.177 | 0.243 | 0.603 | 2.1e-242 | |
| UNIPROTKB|F1LQC0 | 1179 | Lars "Protein Lars" [Rattus no | 0.177 | 0.243 | 0.6 | 2.1e-241 | |
| UNIPROTKB|B4DER1 | 1149 | LARS "cDNA FLJ58157, highly si | 0.122 | 0.172 | 0.65 | 1.7e-229 |
| UNIPROTKB|B4DJ10 LARS "Leucine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 951 (339.8 bits), Expect = 2.0e-251, Sum P(5) = 2.0e-251
Identities = 169/272 (62%), Positives = 208/272 (76%)
Query: 99 MNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFP 158
MNGRLHLGHTFSLSKCEF+V + RLKGK LFPFG HCTGMPIKACADKLKRE+E +G P
Sbjct: 1 MNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKACADKLKREIELYGCP 60
Query: 159 PQFPSEDTEPQ-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQWQIMQSLGLEDDEIRKF 217
P FP E+ E + T YQW IM+SLGL D+EI KF
Sbjct: 61 PDFPDEEEEEEETSVKTEDIIIKDKAKGKKSKAAAKAGSSKYQWGIMKSLGLSDEEIVKF 120
Query: 218 ADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277
++A HWLD+FPPLA+QDL+ +G+ VDWRR+FITTD NP++DSFVRWQF+ LR+R+KIK+G
Sbjct: 121 SEAEHWLDYFPPLAIQDLKRMGLKVDWRRSFITTDVNPYYDSFVRWQFLTLRERNKIKFG 180
Query: 278 KRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATL 337
KRYT++SP+D QPCMDHDR +GEGVGPQEYTL+K+++++PYP+KL L K +FLVAATL
Sbjct: 181 KRYTIYSPKDGQPCMDHDRQTGEGVGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATL 240
Query: 338 RPETMYGQTNAWVRPDMAYIALSCLDSKPVFL 369
RPETM+GQTN WVRPDM YI ++ +F+
Sbjct: 241 RPETMFGQTNCWVRPDMKYIGFETVNGD-IFI 271
|
|
| UNIPROTKB|F1RM15 LARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 6.3e-250, Sum P(5) = 6.3e-250
Identities = 168/283 (59%), Positives = 208/283 (73%)
Query: 88 DKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147
DK YMNGRLHLGHTFSLSKCEF+V + RLKGK L+PFG HCTGMPIKACADK
Sbjct: 3 DKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKTCLYPFGLHCTGMPIKACADK 62
Query: 148 LKREMESFGFPPQFPSEDTEPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXX-YQWQIMQS 206
LKRE+E +G PP FP E+ E + YQW IM+S
Sbjct: 63 LKREIELYGCPPDFPDEEEEEEEINAKTEDIILKDKAKGKKSKASAKTGSSKYQWDIMKS 122
Query: 207 LGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFM 266
LGL D+EI KF++A HWL++FPPLA+QDL+ +G+ VDWRR+FITTD NP++DSFVRWQF+
Sbjct: 123 LGLSDEEIVKFSEAEHWLEYFPPLAIQDLKRMGLKVDWRRSFITTDVNPYYDSFVRWQFL 182
Query: 267 RLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLD 326
LR+R+KIK+GKRYT++SP+D QPCMDHDR +GEGVGPQEYTLIK+++++PYP KL L
Sbjct: 183 TLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEYTLIKLKVLEPYPCKLSGLK 242
Query: 327 SKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFL 369
K VFLVAATLRPETM+GQTN WV P++ YI ++ +F+
Sbjct: 243 GKNVFLVAATLRPETMFGQTNCWVHPEIKYIGFETVNGD-IFI 284
|
|
| FB|FBgn0053123 CG33123 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 1.2e-248, Sum P(4) = 1.2e-248
Identities = 185/344 (53%), Positives = 233/344 (67%)
Query: 71 EKIYEETVGDAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
E+++E A + +K YMNGRLHLGHTFSLSK E+S+R++RLKG+RVL+
Sbjct: 29 ERVHESDAPTAPKKRQAEKFFVTFPFPYMNGRLHLGHTFSLSKAEYSMRYHRLKGRRVLW 88
Query: 131 PFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTXXXXXXXXXXXXXXXXXXXX 190
PFGFHCTGMPIKACADKL RE+E FGFPPQFP +
Sbjct: 89 PFGFHCTGMPIKACADKLTRELEQFGFPPQFPETEEVVPVAAEAASEVPKDKSKGKKSKA 148
Query: 191 XXXXXXXXYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFIT 250
YQWQIMQSLGL+D+EI+ FA+A HWL++FPPLAVQDL+ IG+HVDWRRTFIT
Sbjct: 149 VAKTGAAKYQWQIMQSLGLKDEEIKDFANAEHWLNYFPPLAVQDLKRIGVHVDWRRTFIT 208
Query: 251 TDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLI 310
TD+NP+FDSFVRWQF L++R KI YGKRYT++SP+D QPCMDHDR+SGEGVGPQEYTLI
Sbjct: 209 TDANPYFDSFVRWQFNHLKERGKIMYGKRYTIYSPKDGQPCMDHDRSSGEGVGPQEYTLI 268
Query: 311 KMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLV 370
KM++++ P L + +P+F+VAATLRPETMYGQTN W+ PD+ YIA + V++
Sbjct: 269 KMKVLE-VPKALSSI-KQPIFMVAATLRPETMYGQTNCWLHPDIKYIAWQTNKNNEVWV- 325
Query: 371 AATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNM 414
T R +M Y FT GE+ V E + +++
Sbjct: 326 -----------STRRAAR-NMTYQGFTAVEGEIKVLAEVTGQDL 357
|
|
| UNIPROTKB|F1PZP6 LARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 964 (344.4 bits), Expect = 3.0e-248, Sum P(4) = 3.0e-248
Identities = 174/300 (58%), Positives = 216/300 (72%)
Query: 71 EKIYEETVGDAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
EK++E + + K YMNGRLHLGHTFSLSKCEF+V + RLKGK LF
Sbjct: 27 EKVFEVDASNLENQTGKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKTCLF 86
Query: 131 PFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTX-XXXXXXXXXXXXXXXXXX 189
PFG HCTGMPIKACADKLKRE+E +G PP FP E+ E +
Sbjct: 87 PFGLHCTGMPIKACADKLKREIELYGCPPDFPDEEEEEEEIPVKTEEVIIKDKAKGKKSK 146
Query: 190 XXXXXXXXXYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249
YQW IM+SLGL D+EI KF++A HWLD+FPPLA+QDL+ +G+ VDWRR+FI
Sbjct: 147 AAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHWLDYFPPLAIQDLKRMGLKVDWRRSFI 206
Query: 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTL 309
TTD NP++DSFVRWQF+ LR+R+KIK+GKRYT++SP+D QPCMDHDR +GEGVGPQEYTL
Sbjct: 207 TTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEYTL 266
Query: 310 IKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFL 369
IK+++++PYP+KL L K +FLVAATLRPETM+GQTN WVRPDM YI ++ +F+
Sbjct: 267 IKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGD-IFI 325
|
|
| UNIPROTKB|E1C2I9 LARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 976 (348.6 bits), Expect = 4.2e-247, Sum P(4) = 4.2e-247
Identities = 177/301 (58%), Positives = 217/301 (72%)
Query: 71 EKIYEETVGDAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
E+++E GD K YMNGRLHLGHTFSLSKCEF+V + RLKGK LF
Sbjct: 27 ERVFEAGTGDGHNPRSKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKSCLF 86
Query: 131 PFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ--TXXXXXXXXXXXXXXXXXX 188
PFG HCTGMPIKACADKLKREME +G PP+FP E+ E + +
Sbjct: 87 PFGLHCTGMPIKACADKLKREMELYGCPPEFPDEEEEEEENSAKKDEEIIIKDKAKGKKS 146
Query: 189 XXXXXXXXXXYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTF 248
YQW IM+SLGL D+E+ F++A HWLD+FPPLAVQDL+S+G+ VDWRR+F
Sbjct: 147 KAAAKTGSSKYQWGIMKSLGLSDEEVVSFSEAEHWLDYFPPLAVQDLKSMGLKVDWRRSF 206
Query: 249 ITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYT 308
ITTD NP++DSFVRWQF+ L++R+KIK+GKRYT++SP+D QPCMDHDR +GEGVGPQEYT
Sbjct: 207 ITTDVNPYYDSFVRWQFLTLKERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEYT 266
Query: 309 LIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVF 368
LIKM+++ PYPAKL L K +FLVAATLRPETM+GQTN WVRPDM YI ++ +F
Sbjct: 267 LIKMKVLDPYPAKLSGLRGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGD-IF 325
Query: 369 L 369
+
Sbjct: 326 I 326
|
|
| UNIPROTKB|Q9P2J5 LARS "Leucine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 6.5e-247, Sum P(4) = 6.5e-247
Identities = 173/300 (57%), Positives = 218/300 (72%)
Query: 71 EKIYEETVGDAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
E+++E + + + K YMNGRLHLGHTFSLSKCEF+V + RLKGK LF
Sbjct: 27 ERVFEVNASNLEKQTSKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLF 86
Query: 131 PFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ-TXXXXXXXXXXXXXXXXXXX 189
PFG HCTGMPIKACADKLKRE+E +G PP FP E+ E + T
Sbjct: 87 PFGLHCTGMPIKACADKLKREIELYGCPPDFPDEEEEEEETSVKTEDIIIKDKAKGKKSK 146
Query: 190 XXXXXXXXXYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249
YQW IM+SLGL D+EI KF++A HWLD+FPPLA+QDL+ +G+ VDWRR+FI
Sbjct: 147 AAAKAGSSKYQWGIMKSLGLSDEEIVKFSEAEHWLDYFPPLAIQDLKRMGLKVDWRRSFI 206
Query: 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTL 309
TTD NP++DSFVRWQF+ LR+R+KIK+GKRYT++SP+D QPCMDHDR +GEGVGPQEYTL
Sbjct: 207 TTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEYTL 266
Query: 310 IKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFL 369
+K+++++PYP+KL L K +FLVAATLRPETM+GQTN WVRPDM YI ++ +F+
Sbjct: 267 LKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGD-IFI 325
|
|
| UNIPROTKB|A6QLR2 LARS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 7.6e-244, Sum P(4) = 7.6e-244
Identities = 174/300 (58%), Positives = 217/300 (72%)
Query: 71 EKIYEETVGDAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
+K++E + + + DK YMNGRLHLGHTFSLSKCEF+V + RLKGK LF
Sbjct: 27 KKVFEVNACNLEKQTSKDKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKTCLF 86
Query: 131 PFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTXXXXXXXXXXXXXXXXXXXX 190
PFG HCTGMPIKACADKLKRE+E +G PP FP E+ E +
Sbjct: 87 PFGLHCTGMPIKACADKLKREVELYGCPPDFPDEEEEEEEINDKTENIIIKDKAKGKKSK 146
Query: 191 XXXXXXXX-YQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249
YQW IM+SLGL DDEI KF++A HWL++FPPLAVQDL+ +G+ VDWRR+FI
Sbjct: 147 AAAKAGSSKYQWDIMKSLGLSDDEIVKFSEAEHWLEYFPPLAVQDLKRMGLKVDWRRSFI 206
Query: 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTL 309
TTD NP++DSFVRWQF+ LR+R +IK+GKRYT++SP+D QPCMDHDR +GEGVGPQEYTL
Sbjct: 207 TTDVNPYYDSFVRWQFLTLRERSRIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEYTL 266
Query: 310 IKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFL 369
IK+++++PYP+KL L K +FLVAATLRPETM+GQTN WVRPDM YI ++ +F+
Sbjct: 267 IKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETMNGD-IFI 325
|
|
| MGI|MGI:1913808 Lars "leucyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 2.1e-242, Sum P(4) = 2.1e-242
Identities = 175/290 (60%), Positives = 214/290 (73%)
Query: 71 EKIYEETVG--DAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRV 128
EK++E + + + S K YMNGRLHLGHTFSLSKCEF+V + RLKGK
Sbjct: 27 EKVFEVSASRLEKQKQSSKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKSC 86
Query: 129 LFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTXXXX-XXXXXXXXXXXXX 187
LFPFG HCTGMPIKACADKLKRE+E +G PP FP E+ E +
Sbjct: 87 LFPFGLHCTGMPIKACADKLKREIELYGCPPDFPEEEEEEEESSAKPGDIVVRDKAKGKK 146
Query: 188 XXXXXXXXXXXYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247
YQW IM+SLGL DD+I KF++A HWLD+FPPLAVQDL++IG+ VDWRR+
Sbjct: 147 SKAAAKAGSSKYQWDIMKSLGLSDDDIVKFSEAEHWLDYFPPLAVQDLKTIGLKVDWRRS 206
Query: 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEY 307
FITTD NP++DSFVRWQF+ LR+R+KIK+GKRYT++SP+D QPCMDHDR +GEGVGPQEY
Sbjct: 207 FITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEY 266
Query: 308 TLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 357
TL+K+++++PYP+KL L K +FLVAATLRPETM+GQTN WVRPDM YI
Sbjct: 267 TLVKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYI 316
|
|
| UNIPROTKB|F1LQC0 Lars "Protein Lars" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 2.1e-241, Sum P(4) = 2.1e-241
Identities = 174/290 (60%), Positives = 212/290 (73%)
Query: 71 EKIYEETVG--DAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRV 128
EK++E + + + S K YMNGRLHLGHTFSLSKCEF+V + RLKGK
Sbjct: 27 EKVFEVSASSLEKQKQSSKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKSC 86
Query: 129 LFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTXXXX-XXXXXXXXXXXXX 187
LFPFG HCTGMPIKACADKLKRE+E +G PP FP E+ E +
Sbjct: 87 LFPFGLHCTGMPIKACADKLKREIELYGCPPDFPEEEEEEEESSAKPGDIVMKDKAKGKK 146
Query: 188 XXXXXXXXXXXYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247
YQW IM+SLGL D++I KF++A HWLD+FPPLAVQDL+ IG+ VDWRR+
Sbjct: 147 SKAAAKAGSSKYQWNIMKSLGLSDEDIAKFSEAEHWLDYFPPLAVQDLKKIGLKVDWRRS 206
Query: 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEY 307
FITTD NP++DSFVRWQF+ LR+R+KIK+GKRYT++SP+D QPCMDHDR +GEGVGPQEY
Sbjct: 207 FITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCMDHDRQTGEGVGPQEY 266
Query: 308 TLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 357
TL+K++++ PYP+KL L K +FLVAATLRPETM+GQTN WVRPDM YI
Sbjct: 267 TLVKLKVLDPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYI 316
|
|
| UNIPROTKB|B4DER1 LARS "cDNA FLJ58157, highly similar to Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4)" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 1.7e-229, Sum P(5) = 1.7e-229
Identities = 130/200 (65%), Positives = 159/200 (79%)
Query: 792 TDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTY 851
+DE CVVALCDQWYLDYGE WK QCL N+ T+ +E RRNF A+L WL E+ACSRTY
Sbjct: 492 SDE-CVVALCDQWYLDYGEENWKKQTSQCLKNLETFCEETRRNFEATLGWLQEHACSRTY 550
Query: 852 GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDY 911
GLGT LPWDEQWLIESLSDSTIYMA+YTVAHLLQGG G+ + L I+ + +T EVWDY
Sbjct: 551 GLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLHGQAESPLGIRPQQMTKEVWDY 610
Query: 912 VFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDE 971
VFFK APFP K ++ K KLD +++EF++WYPVDLR SGKDL+ NHL++++Y H A+W ++
Sbjct: 611 VFFKEAPFP-KTQIAKEKLDQLKQEFEFWYPVDLRVSGKDLVPNHLSYYLYNHVAMWPEQ 669
Query: 972 PEMWPRGIRANGHLLLNSAK 991
+ WP +RANGHLLLNS K
Sbjct: 670 SDKWPTAVRANGHLLLNSEK 689
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.4 | 0.824 |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1618 | |||
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 0.0 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 1e-164 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 1e-120 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 1e-106 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 4e-92 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 3e-85 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 6e-78 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 4e-71 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 1e-70 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 5e-63 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 6e-61 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 2e-50 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 4e-48 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 2e-45 | |
| cd07959 | 117 | cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d | 2e-40 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 5e-40 | |
| cd07959 | 117 | cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d | 1e-39 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 1e-34 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 7e-34 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 4e-32 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 2e-29 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 1e-28 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 3e-27 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 9e-27 | |
| cd07959 | 117 | cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d | 2e-24 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 4e-23 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 1e-16 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 2e-15 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 2e-15 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 9e-14 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 3e-13 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 3e-13 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 1e-12 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 3e-12 | |
| pfam08264 | 148 | pfam08264, Anticodon_1, Anticodon-binding domain o | 6e-12 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 3e-11 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 3e-11 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 2e-10 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 5e-10 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 2e-09 | |
| pfam08264 | 148 | pfam08264, Anticodon_1, Anticodon-binding domain o | 3e-09 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 6e-09 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 1e-08 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 3e-08 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 3e-08 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 4e-08 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 4e-08 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 7e-08 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 9e-08 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 9e-08 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 1e-07 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 1e-07 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 3e-07 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 3e-07 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 3e-07 | |
| PRK00260 | 463 | PRK00260, cysS, cysteinyl-tRNA synthetase; Validat | 6e-07 | |
| PTZ00399 | 651 | PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro | 7e-07 | |
| pfam08264 | 148 | pfam08264, Anticodon_1, Anticodon-binding domain o | 8e-07 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 8e-07 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 1e-06 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 1e-06 | |
| PTZ00399 | 651 | PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro | 1e-06 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 1e-06 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 1e-06 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 1e-06 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 3e-06 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 3e-06 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 3e-06 | |
| PRK00260 | 463 | PRK00260, cysS, cysteinyl-tRNA synthetase; Validat | 4e-06 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 6e-06 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 7e-06 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 7e-06 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 1e-05 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 1e-05 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 1e-05 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 2e-05 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 2e-05 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 4e-05 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 9e-05 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 9e-05 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 1e-04 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 1e-04 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 1e-04 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 1e-04 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 3e-04 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 6e-04 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 6e-04 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 7e-04 | |
| PRK06039 | 975 | PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe | 8e-04 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 8e-04 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 0.001 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 0.001 | |
| PLN02843 | 974 | PLN02843, PLN02843, isoleucyl-tRNA synthetase | 0.001 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 0.001 | |
| pfam01406 | 301 | pfam01406, tRNA-synt_1e, tRNA synthetases class I | 0.001 | |
| pfam01406 | 301 | pfam01406, tRNA-synt_1e, tRNA synthetases class I | 0.001 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 0.002 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 0.003 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 0.003 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 0.004 | |
| PTZ00419 | 995 | PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro | 0.004 | |
| PLN02943 | 958 | PLN02943, PLN02943, aminoacyl-tRNA ligase | 0.004 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 648 bits (1674), Expect = 0.0
Identities = 271/560 (48%), Positives = 347/560 (61%), Gaps = 108/560 (19%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++ VPII +PE+G+ A V E LKI+SQNDK+KL EAK L YLKGF DG MLVGE+
Sbjct: 429 VLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEY 488
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
G+KVQE K L++KK+ G A ++Y+ P E K V S S D+
Sbjct: 489 AGRKVQEAKPLIKKKLIEAGQA---------ILYSEP-----EKK-------VMSRSGDE 527
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
CVVAL DQWYL YGE WK AE+CL+ MN Y DE R
Sbjct: 528 -----------------------CVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETR 564
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
F +L WL+++ACSR++GLGT++PWDEQ+LIESLSDSTIYMAYYTVAHLLQGG G+
Sbjct: 565 HGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGK 624
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
+ ++ IK E +T EVWD+VF P P +P L+ M++EF+YWYP DLR
Sbjct: 625 DKSS--IKPEQMTDEVWDFVFCGG-PLPKSSDIPAELLEKMKQEFEYWYPFDLRV----- 676
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
S KDLIQNHLTF IY
Sbjct: 677 ------------------------------------SGKDLIQNHLTFAIYN-------- 692
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
HTAIW +E WPRG R NGHL+LNS KMSKS GNFLTL +A+++FSAD R
Sbjct: 693 --------HTAIWAEEH--WPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATR 742
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
LAD+GD V+DANFV A+A ILRL I W++E+LA +S+LRTG ++ D+VF +E
Sbjct: 743 FALADAGDGVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENE 802
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192
+N+ I ETE +Y M+F+EAL++GF++LQAARD+YR L+ GGM+R LV RF++VQ L
Sbjct: 803 INIAIAETEKNYEAMMFREALKSGFYDLQAARDEYR-LSCGSGGMNRDLVWRFMDVQTRL 861
Query: 1193 LCPVCPHVAEHVY-QLLGKD 1211
+ P+CPH AEHV+ ++L K+
Sbjct: 862 ITPICPHYAEHVWREILKKE 881
|
Length = 1084 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 526 bits (1356), Expect = e-164
Identities = 201/438 (45%), Positives = 252/438 (57%), Gaps = 89/438 (20%)
Query: 4 KGTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHT 63
K T + + L +IE VQ+ W+ EK++E + D+
Sbjct: 7 KSTARRDRLLEIEVAVQKWWEEEKVFE--------AEAGDE------------------- 39
Query: 64 FSLSKFREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRL 123
P +KFF FP+PYMNG LHLGH FSLSK EF+ ++RL
Sbjct: 40 -------------------PPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRL 80
Query: 124 KGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE------PQTDKDDDDP 177
+G VL PF FHCTGMPIKA ADKL RE++ +G PP FP ED + + +
Sbjct: 81 RGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAA 140
Query: 178 VIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRS 237
DK KGKKSKAVAK+G+ KYQW+IM+S GL D EI KF D HWL +FPPLA +DL++
Sbjct: 141 APPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKA 200
Query: 238 IGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRA 297
G+ DWRR+FITTD NP++D+FVRWQF +L+ + KI KRYT++SP D QPC DHDRA
Sbjct: 201 FGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRA 260
Query: 298 SGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 357
SGEGVGPQEY LIKM ++ P+P KL + + G
Sbjct: 261 SGEGVGPQEYVLIKMEVLPPFPGKL-----------------KALEG------------- 290
Query: 358 ALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQ 417
K VFL AATLRPETMYGQTN WV PD Y A+ EVF+ T R+A N+AYQ
Sbjct: 291 -------KKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQ 343
Query: 418 GFTEVEGKINVLLRLTGQ 435
F++V GK L+ LTG
Sbjct: 344 NFSKVPGKPTCLVELTGY 361
|
Length = 1084 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 400 bits (1029), Expect = e-120
Identities = 192/562 (34%), Positives = 279/562 (49%), Gaps = 120/562 (21%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVG-- 710
V+ +PVP+I YG+L A + E+ I+SQ DK+ L+EA +++Y + ++ G+M+
Sbjct: 335 VIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIP 394
Query: 711 EFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSP 770
+KG KV E K+ ++ D+I D G V S+SP
Sbjct: 395 PYKGMKVSEAKEKVKA--DLI------------------------DAGLADVMYEFSESP 428
Query: 771 DDYAALVDLKKKPPFREKYHVTDEMCVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHD 829
V + C+V + DQW++ Y + +WK A +CL M +
Sbjct: 429 ------VICRCGTD-----------CIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPE 471
Query: 830 EVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTF 889
EV+ F ++WL ++AC R YGLGT+LPWDE+WLIESLSDSTIYMAYYT+AH L
Sbjct: 472 EVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYL----- 526
Query: 890 RGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSG 949
N E +T E +DY+F +P + +RREF+YWYP+D R
Sbjct: 527 -----NKDYYGNEQMTDEFFDYIFLGKGDVK-NTNIPLPAIQKLRREFEYWYPLDWRI-- 578
Query: 950 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDL 1009
S KDLI NHLTF+I+
Sbjct: 579 ---------------------------------------SGKDLIPNHLTFYIFH----- 594
Query: 1010 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSAD 1069
H AI+ + WPRGI NG+++L KMSKS+GN LTL +AV+KF AD
Sbjct: 595 -----------HVAIF--PEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGAD 641
Query: 1070 GMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129
RL +AD+ ++V+DA++ ES + ILRL E+ +EI +S L TG + SF D+
Sbjct: 642 VARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEI-TKESNLETGEETSFIDRWL 700
Query: 1130 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQ 1189
S MN IKET + ++A++ F+LQA D YR G H+ ++ R++E
Sbjct: 701 ESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRR---RGGVNHKDVLARYLETW 757
Query: 1190 ALLLCPVCPHVAEHVYQLLGKD 1211
LL P PH AE +++ +G +
Sbjct: 758 IKLLAPFAPHFAEEMWEEVGNE 779
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 360 bits (926), Expect = e-106
Identities = 150/420 (35%), Positives = 209/420 (49%), Gaps = 80/420 (19%)
Query: 796 CVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLG 854
CVV + DQW++DY +P WK A + L NM +E R+ F +++WL + AC+R GLG
Sbjct: 390 CVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRGLG 449
Query: 855 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVF- 913
T+LPWDE+W+IESLSDSTIYMAYYT+AH + IK E LTPE +DYVF
Sbjct: 450 TRLPWDEEWIIESLSDSTIYMAYYTIAHKI----------REYGIKPEQLTPEFFDYVFL 499
Query: 914 --FKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDE 971
K +PK L+ MR EF YWYPVD R
Sbjct: 500 GKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRH------------------------ 535
Query: 972 PEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEM 1031
S KDLI NHLTFFI+ + H AI+ E
Sbjct: 536 -----------------SGKDLIPNHLTFFIF---------N-------HVAIFP--EEK 560
Query: 1032 WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESM 1091
WPRGI NG +LL KMSKS+GN + L +A++++ AD +RL L S + ++DA++ E
Sbjct: 561 WPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKE 620
Query: 1092 ADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKE 1151
++ +L F E KE++ + F DK LS +N IKET + ++
Sbjct: 621 VESVRRQLERFYELAKELIEIGG----EEELRFIDKWLLSRLNRIIKETTEAMESFQTRD 676
Query: 1152 ALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
A++ F+EL Y G + ++ +E+ LL P PH+AE ++ LG +
Sbjct: 677 AVQEAFYELLNDLRWYLRRV---GEANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733
|
Length = 897 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 319 bits (821), Expect = 4e-92
Identities = 136/344 (39%), Positives = 178/344 (51%), Gaps = 70/344 (20%)
Query: 658 PVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGK 715
P+P+I+V YG A V EKL I+SQ D +L+EA + VY F+ G++ GE+ GK
Sbjct: 294 PIPLIEVEGYGEFPAKEVVEKLGIKSQEDP-ELEEATKEVYRAEFHKGVLKENTGEYAGK 352
Query: 716 KVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDK-----GTGIVTSVPSDSP 770
V+E ++ + K + G+A ++Y GT V V
Sbjct: 353 PVREAREKITKDLIEKGIAD--------IMYEFS-----NRPVYCRCGTECVVKV----- 394
Query: 771 DDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDE 830
+ DQW++DY +P WK A + L NM +E
Sbjct: 395 -----------------------------VKDQWFIDYSDPEWKELAHKALDNMEIIPEE 425
Query: 831 VRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 890
R+ F +++WL + AC+R GLGT+LPWDE+W+IESLSDSTIYMAYYT+AH +
Sbjct: 426 YRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKI------ 479
Query: 891 GENGNALNIKAEDLTPEVWDYVF---FKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRC 947
IK E LTPE +DYVF K +PK L+ MR EF YWYPVD R
Sbjct: 480 ----REYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRH 535
Query: 948 SGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAK 991
SGKDLI NHLTFFI+ H AI+ E WPRGI NG +LL K
Sbjct: 536 SGKDLIPNHLTFFIFNHVAIFP--EEKWPRGIVVNGFVLLEGKK 577
|
Length = 897 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 3e-85
Identities = 123/240 (51%), Positives = 158/240 (65%), Gaps = 36/240 (15%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLIQNHLTF IY HTAIW +E WPRG R NGHL+LNS KMSKS GNFLTL +A+++
Sbjct: 678 GKDLIQNHLTFAIYNHTAIWAEEH--WPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEE 735
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
FSAD R LAD+GD V+DANFV A+AA
Sbjct: 736 FSADATRFALADAGDGVDDANFVFETANAA------------------------------ 765
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
ILRL I W++E+LA +S+LRTG ++ D+VF +E+N+ I ETE +Y M+F+EA
Sbjct: 766 ---ILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREA 822
Query: 1389 LRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKE 1448
L++GF++LQAARD+YR L+ GGM+R LV RF++VQ L+ P+CPH AEHV + KE
Sbjct: 823 LKSGFYDLQAARDEYR-LSCGSGGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKE 881
|
Length = 1084 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 281 bits (721), Expect = 6e-78
Identities = 127/289 (43%), Positives = 161/289 (55%), Gaps = 54/289 (18%)
Query: 352 PDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRP-DMAYIAFTTATGE---VFVCT 407
PD Y+ALS L +KP YG + WV P ++ I G+ VC
Sbjct: 403 PD-DYMALSDLKAKPAL--------RAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCE 453
Query: 408 E------------RSARNMAY-QGFT---------------EVEGKINVLLRLTGQVCI- 438
+ A+ + Y +GFT E + I L GQ +
Sbjct: 454 DLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILY 513
Query: 439 ---------RSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNW 489
RSGDECVVAL DQWYL YGE WK AE+CL+ MN Y DE R F +L W
Sbjct: 514 SEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGW 573
Query: 490 LHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKA 549
L+++ACSR++GLGT++PWDEQ+LIESLSDSTIYMAYYTVAHLLQGG G++ ++ IK
Sbjct: 574 LNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSS--IKP 631
Query: 550 EDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
E +T EVWD+VF P P +P L+ M++EF+YWYP DLR SGK
Sbjct: 632 EQMTDEVWDFVFCGG-PLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGK 679
|
Length = 1084 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 256 bits (655), Expect = 4e-71
Identities = 103/427 (24%), Positives = 149/427 (34%), Gaps = 95/427 (22%)
Query: 794 EMCVVALCDQWYLDYGEPTW-KAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYG 852
V QW+++Y W K+ + H E +WL R G
Sbjct: 403 CGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRG 462
Query: 853 LGT--KLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWD 910
LGT LPWDE+W+IESL DST Y T+ + +D
Sbjct: 463 LGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSW---------------YYLRFFD 507
Query: 911 YVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGD 970
+F PF R EF YWYPVDL G + HL +F + H A++
Sbjct: 508 PIFLGELPF-------------DREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALF-- 552
Query: 971 EPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPE 1030
+ + P+ DEP
Sbjct: 553 DEGLVPK-------------------------------------------------DEP- 562
Query: 1031 MWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE 1089
+ + G +L KMSKS+GN + EAV+K+ AD +RL + + +D + E
Sbjct: 563 --FKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSE 620
Query: 1090 SMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLF 1149
S + L VKE L T Q D+ L IK+ + +
Sbjct: 621 SGVEGARRFLQRVWNLVKEHLEKLVEELTKEQ-GKEDRWLLHRT---IKKVTEDFEARQT 676
Query: 1150 KEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
EL A KY T + + R +E LL P PH+AE +++ LG
Sbjct: 677 FNTAIAALMELLNALRKYLRRTEGDRKVLR----EALETWVRLLAPFAPHIAEELWEELG 732
Query: 1210 -KDLIQN 1215
+ + N
Sbjct: 733 NEGFVSN 739
|
Length = 814 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 257 bits (657), Expect = 1e-70
Identities = 98/284 (34%), Positives = 131/284 (46%), Gaps = 59/284 (20%)
Query: 84 SSPDD--KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPI 141
+ PDD KFF T +PY+NG +H GH + + E S RF R+KGK VLFP GFH TG PI
Sbjct: 19 ADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPI 78
Query: 142 KACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQW 201
A+ +KR E
Sbjct: 79 LGLAELIKRRDELTI--------------------------------------------K 94
Query: 202 QIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFV 261
+ + +E+ KF D + +++F A +S+G +DWRR+F TTD P++D F+
Sbjct: 95 NYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTD--PYYDRFI 152
Query: 262 RWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAK 321
WQ +L++ I G+ + P+D P DHD SGEGV EY LIK L
Sbjct: 153 EWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFEL------- 205
Query: 322 LCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSK 365
D F VAATLRPET+YG TN WV P + Y+ K
Sbjct: 206 ---EDGAFYF-VAATLRPETVYGVTNCWVNPTITYVIAEVGGEK 245
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 5e-63
Identities = 80/291 (27%), Positives = 109/291 (37%), Gaps = 103/291 (35%)
Query: 799 ALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLP 858
L DQW+L Y E WK + L ++ + +EVR NW+ CSR GT +P
Sbjct: 127 KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQ---ENWI---GCSRQRYWGTPIP 180
Query: 859 WDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAP 918
W +ESLSDST Y A YT AH L+
Sbjct: 181 W--TDTMESLSDSTWYYARYTDAHNLEQPYEG---------------------------- 210
Query: 919 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRG 978
L+ R EF+YWYPVD+ GK+ NHL + + H A ++ G
Sbjct: 211 ----------DLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKA-------LFDEG 253
Query: 979 IRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRA 1038
+ DE P+G+
Sbjct: 254 L---------------------------------------------VTDE---PPKGLIV 265
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE 1089
G +LL KMSKS+GN +T EA+KK+ AD RL + + DA+F
Sbjct: 266 QGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP--PDADFDW 314
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 6e-61
Identities = 83/167 (49%), Positives = 103/167 (61%), Gaps = 15/167 (8%)
Query: 436 VCIRSGDECVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYA 494
C R G ECVV + DQW++DY +P WK A + L NM +E R+ F +++WL + A
Sbjct: 383 YC-RCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRA 441
Query: 495 CSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTP 554
C+R GLGT+LPWDE+W+IESLSDSTIYMAYYT+AH + IK E LTP
Sbjct: 442 CARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKI----------REYGIKPEQLTP 491
Query: 555 EVWDYVF---FKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
E +DYVF K +PK L+ MR EF YWYPVD R SGK
Sbjct: 492 EFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGK 538
|
Length = 897 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 2e-50
Identities = 74/165 (44%), Positives = 99/165 (60%), Gaps = 12/165 (7%)
Query: 435 QVCIRSGDECVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEY 493
V R G +C+V + DQW++ Y + +WK A +CL M +EV+ F ++WL ++
Sbjct: 428 PVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDW 487
Query: 494 ACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLT 553
AC R YGLGT+LPWDE+WLIESLSDSTIYMAYYT+AH L N E +T
Sbjct: 488 ACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYL----------NKDYYGNEQMT 537
Query: 554 PEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
E +DY+F +P + +RREF+YWYP+D R SGK
Sbjct: 538 DEFFDYIFLGKGDV-KNTNIPLPAIQKLRREFEYWYPLDWRISGK 581
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 4e-48
Identities = 87/232 (37%), Positives = 122/232 (52%), Gaps = 39/232 (16%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTF+I+ H AI+ + WPRGI NG+++L KMSKS+GN LTL +AV+K
Sbjct: 580 GKDLIPNHLTFYIFHHVAIF--PEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEK 637
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
F AD RL +AD+ ++V+DA++ ES +
Sbjct: 638 FGADVARLYIADAAETVQDADWKESEVEGT------------------------------ 667
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
ILRL E+ +EI +S L TG + SF D+ S MN IKET + ++A
Sbjct: 668 ---ILRLERLYEFAEEI-TKESNLETGEETSFIDRWLESRMNAAIKETYEAMENFQTRKA 723
Query: 1389 LRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
++ F+LQA D YR G H+ ++ R++E LL P PH AE +
Sbjct: 724 VKYALFDLQADVDWYRR---RGGVNHKDVLARYLETWIKLLAPFAPHFAEEM 772
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 2e-45
Identities = 79/255 (30%), Positives = 115/255 (45%), Gaps = 58/255 (22%)
Query: 103 LHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFP 162
LH+GH + + + R+ R++G VLFP FH TG PI A+++ R
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR------------ 48
Query: 163 SEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASH 222
G + G+ ++E+ KF D +
Sbjct: 49 --------------------------------GDPETIELYKSLYGIPEEELEKFKDPEY 76
Query: 223 WLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTV 282
+++F A +D++ IG +DWRR F TTD P + F+ WQF +L+++ I G
Sbjct: 77 IVEYFSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVKGSHPVR 134
Query: 283 FSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETM 342
+ P DN P DHD GE EYTLIK +S+ + L AATLRPET+
Sbjct: 135 YCPNDNNPVGDHDLLDGEEPEIVEYTLIKFE------------ESEDLILPAATLRPETI 182
Query: 343 YGQTNAWVRPDMAYI 357
+G TN WV PD Y+
Sbjct: 183 FGVTNLWVNPDATYV 197
|
Length = 897 |
| >gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-40
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 1087 FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTK 1146
F E A++ ILRL F E +E++ T+ L + +F D+ LS +N IKET + Y
Sbjct: 1 FREEEANSAILRLERFYELAEELIETEGEL---EELTFIDRWLLSRLNRLIKETTEAYEN 57
Query: 1147 MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQ 1206
M F+EAL+ G +ELQ D YRE A M++ L+ RF+EV LL P PH+AE ++
Sbjct: 58 MQFREALKEGLYELQNDLDWYRERGGAG--MNKDLLRRFIEVWTRLLAPFAPHLAEEIWH 115
Query: 1207 LL 1208
L
Sbjct: 116 EL 117
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Length = 117 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 5e-40
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 42/230 (18%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTFFI+ H AI+ E WPRGI NG +LL KMSKS+GN + L +A+++
Sbjct: 537 GKDLIPNHLTFFIFNHVAIFP--EEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEE 594
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
+ AD +RL L S + ++DA++ E ++ ++
Sbjct: 595 YGADVVRLYLTSSAELLQDADWREKEVESVRRQ--------------------------- 627
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
+ R Y + + EI + F DK LS +N IKET + ++A
Sbjct: 628 ---LERFYELAKELIEI-------GGEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDA 677
Query: 1389 LRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAE 1438
++ F+EL Y G + ++ +E+ LL P PH+AE
Sbjct: 678 VQEAFYELLNDLRWYLRRV---GEANNKVLREVLEIWIRLLAPFTPHLAE 724
|
Length = 897 |
| >gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-39
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 1323 FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTK 1382
F E A++ ILRL F E +E++ T+ L + +F D+ LS +N IKET + Y
Sbjct: 1 FREEEANSAILRLERFYELAEELIETEGEL---EELTFIDRWLLSRLNRLIKETTEAYEN 57
Query: 1383 MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
M F+EAL+ G +ELQ D YRE A M++ L+ RF+EV LL P PH+AE +
Sbjct: 58 MQFREALKEGLYELQNDLDWYRERGGAG--MNKDLLRRFIEVWTRLLAPFAPHLAEEI 113
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Length = 117 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 38/161 (23%), Positives = 59/161 (36%), Gaps = 37/161 (22%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
KF+ FPY +G LH+GH + + + R+ R++G VLFP GF G+P + A K+
Sbjct: 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI 60
Query: 149 KREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLG 208
R DP + KK K K Y W+ +
Sbjct: 61 GR-------------------------DPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTC 95
Query: 209 LEDDEIRKFADASHWLDHFPP---LAVQDLRSIGIHVDWRR 246
+ + + WL LA + V+W +
Sbjct: 96 DPE-----YYKFTQWLFLKLYEKGLAYKK----EAPVNWCK 127
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-34
Identities = 48/152 (31%), Positives = 61/152 (40%), Gaps = 46/152 (30%)
Query: 447 ALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLP 506
L DQW+L Y E WK + L ++ + +EVR NW+ CSR GT +P
Sbjct: 127 KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQ---ENWI---GCSRQRYWGTPIP 180
Query: 507 WDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAP 566
W +ESLSDST Y A YT AH L+
Sbjct: 181 W--TDTMESLSDSTWYYARYTDAHNLEQPYE----------------------------- 209
Query: 567 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
L+ R EF+YWYPVD+ GK
Sbjct: 210 ---------GDLEFDREEFEYWYPVDIYIGGK 232
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 4e-32
Identities = 49/169 (28%), Positives = 62/169 (36%), Gaps = 33/169 (19%)
Query: 433 TGQVCIRSGDECVVALCDQWYLDYGEPTW-KAAAEQCLANMNTYHDEVRRNFGASLNWLH 491
+V IR G V QW+++Y W K+ + H E +WL
Sbjct: 396 EAKVKIRCG--LVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLP 453
Query: 492 EYACSRTYGLGT--KLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKA 549
R GLGT LPWDE+W+IESL DST Y T+ +
Sbjct: 454 VKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSW------------- 500
Query: 550 EDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
+D +F PF R EF YWYPVDL G
Sbjct: 501 --YYLRFFDPIFLGELPF-------------DREEFNYWYPVDLYIGGI 534
|
Length = 814 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-29
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 16/171 (9%)
Query: 219 DASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGK 278
D + W + + L+S+G +DWRR F T D P + +++WQF++L ++ +
Sbjct: 97 DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCD--PEYYKWIQWQFLKLYEKGLAYRKE 154
Query: 279 RYTVFSPRDNQPCMDHDR------ASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFL 332
+ P D + GE V +E T ++ L LD
Sbjct: 155 APVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLD------ 208
Query: 333 VAATLRPETMYGQTNAWVRPD-MAYIALSCLDSKPVF-LVAATLRPETMYG 381
ATL PET+ G W+ P +A + + + T RP+T++G
Sbjct: 209 KLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFG 259
|
Length = 814 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-28
Identities = 53/238 (22%), Positives = 82/238 (34%), Gaps = 49/238 (20%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRG-----IRANGHLLL-NSAKMSKSEGNFLTL 1262
G + HL +F + H A++ + + P+ + G +L KMSKS+GN +
Sbjct: 533 GIEHAVLHLLYFRFFHKALF--DEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDP 590
Query: 1263 TEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDAN 1322
EAV+K+ A D +RL + + +D
Sbjct: 591 EEAVEKYGA---------------------------------DTVRLYIMFAAPPEQDLE 617
Query: 1323 FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTK 1382
+ ES + L VKE L T Q D+ L IK+ + +
Sbjct: 618 WSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQ-GKEDRWLLHRT---IKKVTEDFEA 673
Query: 1383 MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
EL A KY T + + R +E LL P PH+AE +
Sbjct: 674 RQTFNTAIAALMELLNALRKYLRRTEGDRKVLR----EALETWVRLLAPFAPHIAEEL 727
|
Length = 814 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-27
Identities = 44/67 (65%), Positives = 51/67 (76%)
Query: 729 DIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREK 788
D+IG+ LK+P+ + VIY LPML+I DKGTG+VTSVPSDSPDDY AL DLK KP R K
Sbjct: 362 DLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAK 421
Query: 789 YHVTDEM 795
Y V DE
Sbjct: 422 YGVKDEW 428
|
Length = 1084 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 9e-27
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 1209 GKDLIQNHLTFFIYIHTAIW--GDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1266
GK+ NHL + + H A++ G + P+G+ G +LL KMSKS+GN +T EA+
Sbjct: 231 GKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAI 290
Query: 1267 KKFSADGMRLCLADSGDSVEDANFVE 1292
KK+ AD RL + + DA+F
Sbjct: 291 KKYGADAARLYILFAAP--PDADFDW 314
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-24
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1500
+N IKET + Y M F+EAL+ G +ELQ D YRE A M++ L+ RF+EV
Sbjct: 43 RLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERGGAG--MNKDLLRRFIEVWTR 100
Query: 1501 LLCPVCPHVAEHVYQLL 1517
LL P PH+AE ++ L
Sbjct: 101 LLAPFAPHLAEEIWHEL 117
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Length = 117 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-23
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 64/160 (40%)
Query: 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREK 72
++IE++ Q+ W+ K++E D+
Sbjct: 8 REIEEKWQKRWEEAKVFE----------ADE----------------------------- 28
Query: 73 IYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132
S +KF+ FPY +G LH+GH + + + R+ R++G VL P
Sbjct: 29 ----------DSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPM 78
Query: 133 GFHCTGMPIKACADKL---------------KREMESFGF 157
G+ G+P + A K+ K++++S GF
Sbjct: 79 GWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGF 118
|
Length = 814 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-16
Identities = 31/39 (79%), Positives = 36/39 (92%)
Query: 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 639
T++PWDEQ+LIESLSDSTIYMAYYTVAHLLQGG G++
Sbjct: 587 TRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKD 625
|
Length = 1084 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-15
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1500
MN IKET + ++A++ F+LQA D YR G H+ ++ R++E
Sbjct: 703 RMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRR---RGGVNHKDVLARYLETWIK 759
Query: 1501 LLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
LL P PH AE +++ +G +G + A++PE
Sbjct: 760 LLAPFAPHFAEEMWEEVGNEGFVSLAKFPE 789
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-15
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Query: 582 RREFQY---WYPVDLRCSGKVS--TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 636
R+EF+ W D C+ + T+LPWDE+W+IESLSDSTIYMAYYT+AH ++ +
Sbjct: 427 RKEFENTIDWLK-DRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIREYGIK 485
Query: 637 GEN 639
E
Sbjct: 486 PEQ 488
|
Length = 897 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 9e-14
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 33/177 (18%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1500
+N IKET + ++A++ F+EL Y G + ++ +E+
Sbjct: 657 RLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRV---GEANNKVLREVLEIWIR 713
Query: 1501 LLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGP--IDDILVRSSSY---LMEAAHAFRLQ 1555
LL P PH+AE ++ LG +G + +WPE ID+ + Y L+E
Sbjct: 714 LLAPFTPHLAEELWHKLGGEGFVSLEKWPEPDESKIDEEAELAEEYVKRLIE-------D 766
Query: 1556 VKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQSIVLTTMKQMMEVRE 1612
++ IL +K K KKV ++VA P W+ VL + +V+E
Sbjct: 767 IRE-ILKVAKIKPKKV--------------YIYVA---PDWKYEVLEIAAENGDVKE 805
|
Length = 897 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-13
Identities = 61/288 (21%), Positives = 103/288 (35%), Gaps = 72/288 (25%)
Query: 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMES 154
P G LH+GH + + + +R+ R++G VL+ G+ G+P + +K
Sbjct: 30 GPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEK------- 82
Query: 155 FGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEI 214
K KGKK K G K++ ++
Sbjct: 83 -------------------------KLGIKGKKD--RHKLGREKFR-----------EKC 104
Query: 215 RKFAD--ASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRH 272
R++ A F + +G+ DW R + T D ++ V F+RL D+
Sbjct: 105 REWKMEYADEIRSQF--------KRLGVSGDWDREYFTLDPG--LEAAVWRVFVRLHDKG 154
Query: 273 KIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFL 332
I GK+ +SP N + + + GP I + +P D K L
Sbjct: 155 LIYRGKKPVNWSPALNTALSEAEVEYKDVKGP----SIHVA----FPLA----DGKGASL 202
Query: 333 VAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMY 380
V T P T+ G T V P+ Y+ + + A +++Y
Sbjct: 203 VIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEY---YILAEALLKSLY 247
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 57/191 (29%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
KF+ T P PY NG LHLGH + +F R+ R++G V F G+ G+PI+ A++
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 149 KREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLG 208
G+K K +
Sbjct: 61 -----------------------------------GGRKKKTIWIE-------------- 71
Query: 209 LEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRL 268
D +++ +D R +GI DW +ITT+ P + V F RL
Sbjct: 72 ------EFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTE--PEYSKAVELIFSRL 123
Query: 269 RDRHKIKYGKR 279
++ I G
Sbjct: 124 YEKGLIYRGTH 134
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 57/195 (29%)
Query: 797 VVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTK 856
V + +QW+ D + +K + L + V+ A L L ++A SR GT
Sbjct: 135 PVRITEQWFFDMPK--FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTP 192
Query: 857 LPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKA 916
LP + + + DS I Y K
Sbjct: 193 LP---EDVFDVWFDSGIGPLGSL------------------------------GYPEEKE 219
Query: 917 APFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWP 976
F+ YP D GKD+++ F+I + A++G E+ P
Sbjct: 220 -------------------WFKDSYPADWHLIGKDILRGWANFWITMLVALFG---EIPP 257
Query: 977 RGIRANGHLLLNSAK 991
+ + +G +L +
Sbjct: 258 KNLLVHGFVLDEGGQ 272
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-12
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 639
T+LPWDE+WLIESLSDSTIYMAYYT+AH L + E
Sbjct: 497 TRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQ 535
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-12
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAAR-DKYRELT--------AAEGGMHRTLV 1491
+N IKE + Y K F A + D Y EL+ +T++
Sbjct: 7 RLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDRSAQTVL 66
Query: 1492 LRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPI--DDILVRSSSYLMEAA 1549
+E LL P P + E ++Q LGKK SI A WPE + D+ L E
Sbjct: 67 YEVLETLLRLLAPFMPFITEELWQKLGKKESIHLAPWPEPDEVEEDEELEEEFELRQEIV 126
Query: 1550 HAFR 1553
A R
Sbjct: 127 QAIR 130
|
This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA. Length = 148 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-11
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 1437 AEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVE 1496
+ ++ IK+ + + EL A KY T + + R +E
Sbjct: 655 EDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEGDRKVLR----EALE 710
Query: 1497 VQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
LL P PH+AE +++ LG +G + A WPE
Sbjct: 711 TWVRLLAPFAPHIAEELWEELGNEGFVSNAPWPE 744
|
Length = 814 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-11
Identities = 60/227 (26%), Positives = 84/227 (37%), Gaps = 49/227 (21%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
I H W P M P I A+G L L KMSKS GN + E ++++ D
Sbjct: 299 IRFHAVYW---PAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDA 355
Query: 1071 MRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA---------TQSTLR---- 1117
+R LA D +F S D F+E V LA T +
Sbjct: 356 LRYYLARELPEGSDGDF--SWED--------FVERVNADLANKLGNLANRTLGFINKYFD 405
Query: 1118 -----TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT- 1171
G+ D D+ L+ ++ + K F++AL L + +KY +
Sbjct: 406 GVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEE-IMALASRANKYIDEQA 464
Query: 1172 ----AAEGGMHRT-----LVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
A E R L L V V A+LL P P AE ++ LG
Sbjct: 465 PWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLG 511
|
Length = 558 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 69/281 (24%), Positives = 105/281 (37%), Gaps = 56/281 (19%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+ +GKD+I H W P M P I A+G L L KMSKS
Sbjct: 290 LVHFIGKDII--------RFHAVYW---PAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSR 338
Query: 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-G 1315
GN + E ++++ D +R LA D +F + V++ +AD LA+ G
Sbjct: 339 GNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSW---EDFVERVNAD-----LANKLG 390
Query: 1316 DSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
N R FI K G+ D D+ L+ ++
Sbjct: 391 ------NLAN--------RTLGFIN--KYFDGVVPA--AGAPDLEEDEELLALAREALEA 432
Query: 1376 TEDHYTKMLFKEALRTGFFELQAARDKYRELT-----AAEGGMHRT-----LVLRFVEVQ 1425
+ K F++AL L + +KY + A E R L L V V
Sbjct: 433 VAEAMEKYEFRKALEE-IMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVL 491
Query: 1426 ALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGF 1466
A+LL P P AE + L ++E ++T + ++ L G
Sbjct: 492 AILLYPFMPETAEKIWDQLGLEEDARNFTWLGARQPLLPGH 532
|
Length = 558 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN-SAKMSKSEGNFLT 1261
+ L+GKD+++ F+I + A++G E+ P+ + +G +L KMSKS+GN +
Sbjct: 227 ADWHLIGKDILRGWANFWITMLVALFG---EIPPKNLLVHGFVLDEGGQKMSKSKGNVID 283
Query: 1262 LTEAVKKFSADGMRLCLA 1279
++ V+K+ AD +R L
Sbjct: 284 PSDVVEKYGADALRYYLT 301
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIW------GDEPEMWPRGIRANGHLLLNSAKMSKSEG 1257
+ +GKD+I H W P P + A+G L + KMSKS G
Sbjct: 281 IVHFIGKDII--------RFHAIYWPAMLMAAGLPL--PTQVFAHGWLTVEGGKMSKSRG 330
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
N + E + ++ D +R LA +D +F
Sbjct: 331 NVVDPDELLDRYGVDALRYYLAREAPEGKDGDF 363
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-09
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 1126 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAAR-DKYRELT--------AAEGG 1176
D+ LS +N IKE + Y K F A + D Y EL+
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDR 60
Query: 1177 MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIW 1228
+T++ +E LL P P + E ++Q LGK IH A W
Sbjct: 61 SAQTVLYEVLETLLRLLAPFMPFITEELWQKLGKK---------ESIHLAPW 103
|
This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA. Length = 148 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 6e-09
Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 63/269 (23%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIW-------GDEPEMWPRGIRANGHLLLNSAKMSKSEG 1257
Y +GKD N I H+ IW G+ ++ P I ++ +L L K SKS G
Sbjct: 290 YYFIGKD---N-----IPFHSIIWPAMLLGSGEPLKL-PDEIVSSEYLTLEGGKFSKSRG 340
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GD 1316
+ + +A++++ D +R LA + D +F + V++ +++ LAD G
Sbjct: 341 WGIWVDDALERYPPDYLRYYLAANAPENSDTDFTW---EEFVRRVNSE-----LADKYG- 391
Query: 1317 SVEDANFVESMADAGILRLYTFIE-WVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
N V R+ +FIE + I+ + D+ ++E KE
Sbjct: 392 -----NLVN--------RVLSFIEKYFGGIVP-------PGELGDEDRELIAEAEALFKE 431
Query: 1376 TEDHYTKMLFKEALRTGFFELQAARDKYRELTA-----------AEGGMHRTL-VLRFVE 1423
+ FK+AL EL +KY + A A ++ L ++R +
Sbjct: 432 VGELLEAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLL- 489
Query: 1424 VQALLLCPVCPHVAEHVEMNLKIKETEDH 1452
A+LL P P A+ + L + E
Sbjct: 490 --AVLLYPFLPFSAQKIWEMLGGENIEKL 516
|
Length = 556 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-08
Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 44/231 (19%)
Query: 1018 IYIHTAIW-------GDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
I H+ IW G+ ++ P I ++ +L L K SKS G + + +A++++ D
Sbjct: 298 IPFHSIIWPAMLLGSGEPLKL-PDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDY 356
Query: 1071 MRLCLADSGDSVEDANFVES---------MADA-GIL--RLYTFIE-WVKEILATQSTLR 1117
+R LA + D +F +AD G L R+ +FIE + I+
Sbjct: 357 LRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVP------ 410
Query: 1118 TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA----- 1172
+ D+ ++E KE + FK+AL EL +KY + A
Sbjct: 411 -PGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEE-IMELAREANKYLDEKAPWKLA 468
Query: 1173 ------AEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNH 1216
A ++ L ++R + A+LL P P A+ ++++LG + I+
Sbjct: 469 KTDRERAATVLYTALNLVRLL---AVLLYPFLPFSAQKIWEMLGGENIEKL 516
|
Length = 556 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1007 SDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN-SAKMSKSEGNFLTLTEAVKK 1065
D+++ F+I + A++G E+ P+ + +G +L KMSKS+GN + ++ V+K
Sbjct: 234 KDILRGWANFWITMLVALFG---EIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEK 290
Query: 1066 FSADGMRLCLA 1076
+ AD +R L
Sbjct: 291 YGADALRYYLT 301
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-08
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+ +GKD+I H W P M P I A+G+L + KMSKS
Sbjct: 237 LVHFIGKDII--------RFHAIYW---PAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSR 285
Query: 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
GN + + ++++ AD +R L +D++F
Sbjct: 286 GNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTF 635
T +PW +ESLSDST Y A YT AH L+
Sbjct: 177 TPIPW--TDTMESLSDSTWYYARYTDAHNLEQPYE 209
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-08
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPI 141
P P ++G LH+GH FS + +F R+ R++G V FP G+ G+P
Sbjct: 45 PPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPT 91
|
Length = 800 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 7e-08
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 1018 IYIHTAIW------GDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
I H W P P + A+G L + KMSKS GN + E + ++ D +
Sbjct: 290 IRFHAIYWPAMLMAAGLPL--PTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDRYGVDAL 347
Query: 1072 RLCLADSGDSVEDANF 1087
R LA +D +F
Sbjct: 348 RYYLAREAPEGKDGDF 363
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 9e-08
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 729 DIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREK 788
IG + PV V LP + KGTG+V SVP+ +PDDY AL DL P +
Sbjct: 273 QFIGKKVHNPVVGPEV-PILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGI 331
Query: 789 YHVTDEMCVVAL 800
V ++ V L
Sbjct: 332 KPVVIDIEPVPL 343
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 9e-08
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP 140
P P + G LH+GH + S + R+ R+KG VL+ G G+
Sbjct: 40 PPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIA 85
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-07
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 588 WYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQ 631
P +R G S LPWDE+W+IESL DST Y T+ +
Sbjct: 455 KLPERVRGLGTGS-PLPWDEEWVIESLPDSTAYRETDTMDTFID 497
|
Length = 814 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-07
Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 36/222 (16%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
+ HT W P M P + ++G+L + KMSKS GN + ++ + +F AD
Sbjct: 293 VRFHTIYW---PAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADI 349
Query: 1071 MRLCLADSGDSVEDANFVES----------MADAGIL--RLYTFIEWVKEILATQSTLRT 1118
+R L +D +F G L R FI K+ L +
Sbjct: 350 LRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFI---KKYFNGV--LPS 404
Query: 1119 GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKY--------REL 1170
DK L +N +++ ++ F++ALR +L +KY
Sbjct: 405 EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALRE-IMKLADRGNKYIDENKPWELFK 463
Query: 1171 TAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212
+ + + V ++LL P+ P ++E + + L +L
Sbjct: 464 QSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFEL 505
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 59/276 (21%), Positives = 105/276 (38%), Gaps = 55/276 (19%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+ +GKD++ HT W P M P + ++G+L + KMSKS
Sbjct: 284 LIHFIGKDIV--------RFHTIYW---PAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSL 332
Query: 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-G 1315
GN + ++ + +F AD +R L +D +F + V++ +AD LA+ G
Sbjct: 333 GNVVDPSDLLARFGADILRYYLLKERPLGKDGDF---SWEDFVERVNAD-----LANKLG 384
Query: 1316 DSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
N + R FI K+ L + DK L +N +++
Sbjct: 385 ------NLLN--------RTLGFI---KKYFNGV--LPSEDITDEEDKKLLKLINEALEQ 425
Query: 1376 TEDHYTKMLFKEALRTGFFELQAARDKY--------RELTAAEGGMHRTLVLRFVEVQAL 1427
++ F++ALR +L +KY + + + V ++
Sbjct: 426 IDEAIESFEFRKALRE-IMKLADRGNKYIDENKPWELFKQSPRLKELLAVCSMLIRVLSI 484
Query: 1428 LLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALR 1463
LL P+ P ++E + L + D K+L L
Sbjct: 485 LLYPIMPKLSEKILKFLNFELEWDFKLKLLEGHKLN 520
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP 140
P P + G LH+GH + + + R+ R+KG VL+P G G+
Sbjct: 8 PPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIA 53
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 3e-07
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-----W--PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD+I Y HT W P M + P + A+G L + AKMSKS
Sbjct: 286 LYHFIGKDII--------YFHTLFW---PAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSR 334
Query: 1257 GNFLTLTEAVKKFSADGMRLCLA-DSGDSVEDANF 1290
G F+ + D +R LA ++++D +F
Sbjct: 335 GTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDF 369
|
Length = 673 |
| >gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 6e-07
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA--------D-SGDSVEDANFVE 1089
NG + +N KMSKS GNF T+ + +KK+ + +R L + S +++E A
Sbjct: 257 NGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAK--- 313
Query: 1090 SMADAGILRLYTFIE 1104
+ RLY +
Sbjct: 314 ----KALERLYNALA 324
|
Length = 463 |
| >gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-07
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 1040 GHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR-LCLADSGDSVEDANFVESMADAGILR 1098
GHL + KMSKS NF+T+ +A+ K++A +R L L D N+ + D I +
Sbjct: 307 GHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKP--MNYSDESMDEAIEK 364
Query: 1099 LYTFIEW---VKEIL 1110
F + VK L
Sbjct: 365 DKVFFNFFANVKIKL 379
|
Length = 651 |
| >gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 1362 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAAR-DKYRELT--------AAEGG 1412
D+ LS +N IKE + Y K F A + D Y EL+
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDR 60
Query: 1413 MHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKET 1449
+T++ +E LL P P + E + L KE+
Sbjct: 61 SAQTVLYEVLETLLRLLAPFMPFITEELWQKLGKKES 97
|
This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA. Length = 148 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 8e-07
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP 140
F P P + G LH+GH + + + R+ R++G VL+P G G+
Sbjct: 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIA 85
|
Length = 877 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-06
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
I H W P M P I A+G+L + KMSKS GN + + ++++ AD
Sbjct: 246 IRFHAIYW---PAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADA 302
Query: 1071 MRLCLADSGDSVEDANF 1087
+R L +D++F
Sbjct: 303 LRYYLLRERPEGKDSDF 319
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-06
Identities = 52/227 (22%), Positives = 77/227 (33%), Gaps = 54/227 (23%)
Query: 1018 IYIHTAIWGDEPEM-----W--PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
IY HT W P M + P + A+G L + AKMSKS G F+ + D
Sbjct: 295 IYFHTLFW---PAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDY 351
Query: 1071 MRLCLA-DSGDSVEDANFVESMAD---------AGIL-----RLYTFIEWVKEILATQST 1115
+R LA ++++D +F + D G + R FI
Sbjct: 352 LRYYLAAKLPETIDDLDF--NWEDFQQRVNSELVGKVVNFASRTAGFI---------NKR 400
Query: 1116 LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA---- 1162
D+ D L E ++ + Y F++ALR + +
Sbjct: 401 FDGKLPDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKL 460
Query: 1163 ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
A+ L A L L A+ L PV P +AE L
Sbjct: 461 AKQDGERLQAV---CSVGLNL--FRALAIYLKPVLPELAERAEAFLN 502
|
Length = 673 |
| >gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 1243 GHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR-LCLADSGDSVEDANFVESMADAAVKK 1301
GHL + KMSKS NF+T+ +A+ K++A +R L L D N+ + D A++K
Sbjct: 307 GHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKP--MNYSDESMDEAIEK 364
|
Length = 651 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 1e-06
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 1478 ELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
L AE + ++ +E+ LL P PH+AE +++ LG +GSI A WP
Sbjct: 682 ALYKAEDEQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHEGSIANAPWPT 734
|
Length = 805 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-06
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 66/160 (41%)
Query: 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREK 72
++IEK+ Q+ W+ K ++ K++ FPY +G LH+GH +
Sbjct: 8 KEIEKKWQKYWEENKTFK------TTEDSSKKYYVLDMFPYPSGGLHMGHVRN------- 54
Query: 73 IYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132
Y T+GD + R+ R++G VL P
Sbjct: 55 -Y--TIGDVI-----------------------------------ARYKRMQGYNVLHPM 76
Query: 133 GFHCTGMP-----IK----------ACADKLKREMESFGF 157
G+ G+P IK +K++++S GF
Sbjct: 77 GWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGF 116
|
Length = 805 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-06
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 41/180 (22%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA---------DAGI-- 1096
KMSKS+GN + + ++K+ AD RL F D+G+
Sbjct: 570 KMSKSKGNVVDPDDIIEKYGADTARL-------------FEMFAGPPEKDLEWSDSGVEG 616
Query: 1097 ----L-RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKE 1151
L R++ + + L + DK +++ IK+ + ++ F
Sbjct: 617 AYRFLQRVWRLVV---DAKGEAGALDVAALSE--DKELRRKLHKTIKKVTEDIERLRFNT 671
Query: 1152 ALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
A+ EL L AE + ++ +E+ LL P PH+AE +++ LG +
Sbjct: 672 AIAA-LMEL------VNALYKAEDEQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE 724
|
Length = 805 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-06
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 704 DGIMLVGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVT 763
+ ++ E KG ++IG +K PVT V LP + D GTG+V
Sbjct: 221 RDVEIIEEIKGS-------------ELIGKKVKNPVTGKEVP-ILPADFVDPDNGTGVVM 266
Query: 764 SVPSDSPDDYAALVDLKKKP 783
SVP+ +P DY AL DLKK
Sbjct: 267 SVPAHAPYDYVALRDLKKNK 286
|
Length = 897 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-06
Identities = 43/175 (24%), Positives = 62/175 (35%), Gaps = 16/175 (9%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAG------ILRLYT 1101
KMSKS+GN + + + K+ AD +R LA D NF E + +
Sbjct: 525 KMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATR 584
Query: 1102 FIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT--GFFE 1159
F+ + L + D+ LS +N +KE + F EA R F
Sbjct: 585 FVLMNLDDLGPDDLDLLALSLA--DRWILSRLNETVKEVTEALDNYRFDEAARALYEFIW 642
Query: 1160 LQAARD-----KYRELTAAEGGMHRTLVLRFVEVQAL-LLCPVCPHVAEHVYQLL 1208
K R E L +V L LL P P + E ++Q L
Sbjct: 643 NDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKL 697
|
Length = 877 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF-VESMADA--G 1095
NG L ++ KMSKS GNF+T+ + +KK+ + +RL L S +F E + +A
Sbjct: 259 NGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLL-SSHYRSPLDFSEELLEEAKKA 317
Query: 1096 ILRLYTFIE 1104
+ RLY +
Sbjct: 318 LERLYNALR 326
|
Length = 464 |
| >gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1278
NG + +N KMSKS GNF T+ + +KK+ + +R L
Sbjct: 257 NGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFL 293
|
Length = 463 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-06
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 15/77 (19%)
Query: 96 FPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACA---------- 145
FPY +G LH+GH + + + R+ R+KG VL P G+ G+P + A
Sbjct: 37 FPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPIGWDAFGLPAENAAIKRGIHPAKW 96
Query: 146 -----DKLKREMESFGF 157
+K+++++ GF
Sbjct: 97 TYENIANMKKQLQALGF 113
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
GHL ++ KMSKS GNF+T+ +A+KK+ + +RL
Sbjct: 165 TGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRL 199
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1276
GHL ++ KMSKS GNF+T+ +A+KK+ + +RL
Sbjct: 165 TGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRL 199
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 442 DECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGL 501
V + +QW+ D + +K + L + V+ A L L ++A SR
Sbjct: 132 GTHPVRITEQWFFDMPK--FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYW 189
Query: 502 GTKLPWDEQWLIESLSDSTIYMAYYT 527
GT LP + + + DS I
Sbjct: 190 GTPLP---EDVFDVWFDSGIGPLGSL 212
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-05
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 89 KFFTTFPFPYMNGRLHLGH--TFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACAD 146
+ T +PY NG LHLGH L F R+ RLKG VLF G G PI+ A
Sbjct: 4 RILITSAWPYANGPLHLGHLAGSGLPADVF-ARYQRLKGNEVLFVSGSDEHGTPIELAAK 62
Query: 147 KLK 149
K
Sbjct: 63 KEG 65
|
Length = 556 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-05
Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 55/151 (36%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTF--PFPYMNGRLHLGHTFSLSKF 69
L K E ++ + W+ IYE+ + F P PY NG +H+GH +
Sbjct: 20 LPKKEPKILKFWEENDIYEKIRE---ERNKGKPKFVLHDGP-PYANGNIHIGHALN---- 71
Query: 70 REKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129
KI ++ + VR+ ++G V
Sbjct: 72 --KILKDII---------------------------------------VRYKTMQGYDVP 90
Query: 130 FPFGFHCTGMPIKACADKL----KREMESFG 156
+ G+ C G+PI+ +K K+++ESFG
Sbjct: 91 YVPGWDCHGLPIELKVEKKLGIGKKDIESFG 121
|
Length = 933 |
| >gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-05
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 39/206 (18%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADS--GDSVEDANFVESMADAGILRLYTFIEW 1105
KMSKS+GN +T E ++K+ AD +R A + G D F E G RL T + W
Sbjct: 533 KMSKSKGNVVTPEELLEKYGADAVRYWAASARLGS---DTPFDEKQVKIG-RRLLTKL-W 587
Query: 1106 --VKEILATQSTLRTGSQDSFN--DKVFLSEMNLKIKETEDHYTKMLFKEALRT--GFF- 1158
+ +L + + D+ L+++ +++ + F +AL FF
Sbjct: 588 NASRFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFW 647
Query: 1159 --------ELQAARDKYRELTAAEGGMHRT--LVLRFV-EVQALLLCPVCPHVAEHVYQL 1207
EL K R E ++ L V + LL P P + E V+
Sbjct: 648 HVFCDDYLELV----KSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSW 703
Query: 1208 LGKDLIQNHLTFFIYIHTAIWGDEPE 1233
L +H A W + E
Sbjct: 704 LYGG----------SVHRASWPEPDE 719
|
Length = 800 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF-VESMADA--A 1298
NG L ++ KMSKS GNF+T+ + +KK+ + +RL L S +F E + +A A
Sbjct: 259 NGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLL-SSHYRSPLDFSEELLEEAKKA 317
Query: 1299 VKKFSADGMRLCLADSGDSVE------DANFVESMAD-----AGILRLYTFIEWVKEI 1345
+++ + +R +GD+ +A F E++ D + L+ E KEI
Sbjct: 318 LERL-YNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLF---ELAKEI 371
|
Length = 464 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-05
Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEW-V 1106
KMSKS GN + + + K+ AD +RL +A S D ED F + + ++ Y I W
Sbjct: 611 KMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQ-VVEKYRKIRWNT 668
Query: 1107 KEILATQSTLRTGSQDSFN----------DKVFLSEMNLKIKETEDHYTKMLFKEALRT- 1155
L T + L FN D+ LS +N ++E + K F + LR
Sbjct: 669 YRFLLTYANLD-KFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRAL 727
Query: 1156 -GFFELQAAR---DKYRELTAAEGGMHRTLVLRFVEVQAL-----LLCPVCPHVAEHVYQ 1206
F + + R+ E + + AL LL P PH AE +YQ
Sbjct: 728 QDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQ 787
Query: 1207 LL 1208
L
Sbjct: 788 NL 789
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 9e-05
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 84 SSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKA 143
K T PY NG HLGH ++ + R+ RL+G V F G G I+
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 144 CADKLKREMESFGFPPQ 160
A+K G PQ
Sbjct: 61 KAEKE-------GITPQ 70
|
Length = 558 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 9e-05
Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 66/254 (25%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVK 1107
KMSKS GN + + + K+ AD +RL +A S D ED F + ++ V+
Sbjct: 602 KMSKSLGNVVDPQDVIDKYGADILRLWVA-SSDYWEDLRFSD-----------EILKQVR 649
Query: 1108 EILAT-QSTLR--TGSQDSFN--------------DKVFLSEMNLKIKETEDHYTKMLFK 1150
E+ ++T R G+ D F+ D+ LS +N +KE + Y F
Sbjct: 650 EVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFH 709
Query: 1151 EALRT--GF-------FELQAARDK-YREL------TAAEGGMHRTLVLRFVEVQALLLC 1194
+ +R F + L +D+ Y E AA+ ++ L + LL
Sbjct: 710 KVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHIL-----KALVRLLA 764
Query: 1195 PVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSK 1254
P+ P AE ++Q L + + +H W PE+ L+ A ++
Sbjct: 765 PILPFTAEEIWQNLPGERKEE------SVHLEDW---PEVDE-------ELIDVEAALAA 808
Query: 1255 SEGNFLTLTEAVKK 1268
L L + V K
Sbjct: 809 RWEALLKLRDPVNK 822
|
Length = 933 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-04
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 13/177 (7%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAG---ILRLYTFIE 1104
KMSKS GN + + ++K+ AD +R LA +D NF ++ + +L+
Sbjct: 525 KMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASR 584
Query: 1105 WVKEILATQSTLRTGSQD-SFNDKVFLSEMNLKIKETEDHYTKMLFKEA---LRTGFFE- 1159
+V L+ L G + S D+ LS++N IKE K F EA L +
Sbjct: 585 FVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWND 644
Query: 1160 -----LQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
++ + + AE R + ++ LL P P + E ++Q +
Sbjct: 645 FCDWYIELVKYRLYNGNEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG 701
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 1034 RGIRANGHLLLNS-AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA 1092
+A G L+ KMSKS+GN + E V+ + AD +RL + G + ES
Sbjct: 590 GKDKAGGELVYVGYEKMSKSKGNGIDPQEIVESYGADALRLFIMFMGPIAASLEWNESGL 649
Query: 1093 DAG---ILRLYTFIEWVKEILATQSTLRTGSQD-SFNDKVFLSEMNLKIKETEDHYTKML 1148
+ + R++ V EI K +++ +K+ + K
Sbjct: 650 EGARRFLDRVWNL---VYEITGELDAASLTVTALEEAQKELRRDVHKFLKKVTEDLEK-- 704
Query: 1149 FKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL 1208
+E+ T + + +L A+ L+L +++ +L P PH+AE +++ L
Sbjct: 705 -RESFNTAISAMMELLN---KLYKAK---KEALMLEYLKGFVTVLSPFAPHLAEELWEKL 757
Query: 1209 G 1209
G
Sbjct: 758 G 758
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 71 EKIYEETVGDAVRSSPDDKFFTTFPF----PYMNGRLHLGHTFSLSKCEFSVRFNRLKGK 126
I+E+ V+ K F F PY NG +HLGH + + +R+ ++G
Sbjct: 22 NDIFEK-----VKKLNKGK--PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGF 74
Query: 127 RVLFPFGFHCTGMPI 141
V G+ G+PI
Sbjct: 75 NVTRKPGWDTHGLPI 89
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 97 PYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPI-----KACADKLKRE 151
PY NG H GH + + R+ ++G V G+ C G+PI K K++
Sbjct: 10 PYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKD 69
Query: 152 MESFG 156
+E G
Sbjct: 70 IEKMG 74
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESM---ADAG 1095
NG L++++ KMSKS GNF T+ + +K + + +R L S +F E + A
Sbjct: 256 NGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLL-SVHYRSPLDFSEELLEAAKNA 314
Query: 1096 ILRLYTFIEWVKEILA--TQSTLRTGS-------------QDSFNDKVFLSEMNLKIKET 1140
+ RLY + + LA +L D N L+ + K
Sbjct: 315 LERLYKALRVLDTSLAYSGNQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSI 374
Query: 1141 EDHYTKMLFKEALRTGFFELQAA 1163
+ L L++
Sbjct: 375 NLTFVSKADAALLIEHLIFLESR 397
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
K T PY+NG HLGH + + R+ RL+G VLF G G I+ A++
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60
Query: 149 KREMESFGFPPQ 160
G PQ
Sbjct: 61 -------GVTPQ 65
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-04
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
T PY NG+ HLGH ++ + R+ RL+G VLF G G I+ A++
Sbjct: 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE 59
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-04
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEP-EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVK 1267
G DLI H I A +G + + W NG L++++ KMSKS GNF T+ + +K
Sbjct: 226 GVDLIFPHHENEIAQSEAAFGKQLAKYWMH----NGFLMIDNEKMSKSLGNFFTVRDVLK 281
Query: 1268 KFSADGMRLCLA 1279
+ + +R L
Sbjct: 282 NYDPEILRYFLL 293
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 8e-04
Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 61/154 (39%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPF----PYMNGRLHLGHTFSLS 67
+E+EV + W I+E++ + + F F P NG H GH L+
Sbjct: 13 FPALEEEVLKFWKENDIFEKS----IENREGGPEFV---FYDGPPTANGLPHYGHL--LT 63
Query: 68 KFREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKR 127
+ T+ D V R+ +KG +
Sbjct: 64 R--------TIKDVV-----------------------------------PRYKTMKGYK 80
Query: 128 VLFPFGFHCTGMPIKACADKL-----KREMESFG 156
V G+ G+P++ +K K+++E +G
Sbjct: 81 VERRAGWDTHGLPVELEVEKELGISGKKDIEEYG 114
|
Length = 975 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 8e-04
Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 47/208 (22%)
Query: 1033 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVE--DANFVES 1090
P+ + A+G L L+ KMSKS GN + + V ++ D +R L + D +F
Sbjct: 284 PKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLR--EIPFGQDGDFSR- 340
Query: 1091 MADAGILRLYTFIEWVKEILA---------TQSTLR--------TGSQDSFNDKVFLSEM 1133
+A FI + LA T S + + D+ L
Sbjct: 341 --EA-------FINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAA 391
Query: 1134 NLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAA-----------EGGMHRTL- 1181
++ + F +AL L A +KY + A ++ L
Sbjct: 392 AALLERVRAAMDNLAFDKALE-AILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLE 450
Query: 1182 VLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
VLR + A+LL PV P +A + LG
Sbjct: 451 VLRGI---AVLLQPVMPELAAKILDQLG 475
|
Length = 511 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 51/208 (24%), Positives = 69/208 (33%), Gaps = 39/208 (18%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLC 1310
KMSKS+GN + + + K+ AD +R LA D NF E + + F +L
Sbjct: 525 KMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGY-RNF---LNKLW 580
Query: 1311 LADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMN 1370
A FV D + L S D+ LS +N
Sbjct: 581 NA--------TRFVLMNLDD-----LGPDDLDLLAL------------SLADRWILSRLN 615
Query: 1371 LKIKETEDHYTKMLFKEALRT--GFFELQAARD-----KYRELTAAEGGMHRTLVLRFVE 1423
+KE + F EA R F K R E L +V
Sbjct: 616 ETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVL 675
Query: 1424 VQAL-LLCPVCPHVAEHVEMNLKIKETE 1450
L LL P P + E E+ K+ TE
Sbjct: 676 DTLLRLLHPFMPFITE--EIWQKLPGTE 701
|
Length = 877 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 0.001
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
KF+ T P Y NG+ H+GH ++ + RF RL+G V F
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFF 43
|
Length = 511 |
| >gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 97 PYMNGRLHLGHTFSLSKC--EFSVRFNRLKGKRVLFPFGFHCTGMPI 141
PY NG LH+GH +L+K +F R+ L+GK+V + G+ C G+PI
Sbjct: 41 PYANGDLHIGH--ALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPI 85
|
Length = 974 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 0.001
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
F+ T P Y NG+ H+GH ++ + R+ RL+G V F
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFF 46
|
Length = 648 |
| >gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA 1076
NGHL++ KMSKS GNFLT+ + +K++ +R L
Sbjct: 244 NGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLL 281
|
This family includes only cysteinyl tRNA synthetases. Length = 301 |
| >gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA 1279
NGHL++ KMSKS GNFLT+ + +K++ +R L
Sbjct: 244 NGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLL 281
|
This family includes only cysteinyl tRNA synthetases. Length = 301 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM-----PIKAC 144
F T PY+NG H+GH ++ + R+ RL+G VLF TG I+
Sbjct: 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLF-----VTGTDEHGTKIELA 55
Query: 145 ADKLKREMESFGFPPQ 160
A+K G PQ
Sbjct: 56 AEKE-------GVTPQ 64
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 45/106 (42%)
Query: 44 KFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRL 103
KF+ T P PY NG LHLGH + D
Sbjct: 1 KFYVTTPPPYANGSLHLGHA----------LTHIIAD----------------------- 27
Query: 104 HLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLK 149
F R+ R++G V F G+ G+PI+ A++
Sbjct: 28 ------------FIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG 61
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.003
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 232 VQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPC 291
++ +G +DW R T D V+ F+RL ++ I G+ + P+ N
Sbjct: 125 KNQIKRLGASLDWSRERFTMD--EGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAI 182
Query: 292 MDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVR 351
D + E G K+ ++ YP + +LV AT RPETM+G T V
Sbjct: 183 SDIEVEYKEVKG-------KLYYIR-YPLA----NGSKDYLVVATTRPETMFGDTAVAVH 230
Query: 352 PD 353
P+
Sbjct: 231 PE 232
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.004
Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 1446 IKETEDHYTKMLFKEALRT--GFFELQAARD-----KYRELTAAEGGMHRTLVLRFVEVQ 1498
+KE + F EA R F K R E L +V
Sbjct: 618 VKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDT 677
Query: 1499 AL-LLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
L LL P P + E ++Q L SI A WPE
Sbjct: 678 LLRLLHPFMPFITEEIWQKLPGTESIHLASWPE 710
|
Length = 877 |
| >gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.004
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 80 DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
DA + KF P P + G LH+GH + + + +R++R+KG L+
Sbjct: 52 DAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLW 102
|
Length = 995 |
| >gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.004
Identities = 67/324 (20%), Positives = 107/324 (33%), Gaps = 85/324 (26%)
Query: 60 LGHTFSLSKFREKIYE--ETVG----DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSK 113
+F + E+IY E+ G + R D F P P + G LH+GH ++
Sbjct: 57 TAKSFDFTS-EERIYNWWESQGYFKPNFDRGG--DPFVIPMPPPNVTGSLHMGHAMFVTL 113
Query: 114 CEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKD 173
+ VR+NR+KG+ L+ G G+ + +K+
Sbjct: 114 EDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKML------------------------ 149
Query: 174 DDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQ 233
S+G K + + K W+ W + +
Sbjct: 150 --------ASEGIKRTDLGRDEFTKRVWE--------------------WKEKYGGTITN 181
Query: 234 DLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMD 293
++ +G DW R T D V F+RL ++ I G +SP D
Sbjct: 182 QIKRLGASCDWSRERFTLDEQ--LSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSD 239
Query: 294 HDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPD 353
+ E G Y IK R+ FL AT RPET++G V P+
Sbjct: 240 LEVEYSEEPGTLYY--IKYRVA----------GGSEDFLTIATTRPETLFGDVAIAVNPE 287
Query: 354 ----------MAYIALSCLDSKPV 367
MA + ++ P+
Sbjct: 288 DDRYSKYIGKMAIVPMTYGRHVPI 311
|
Length = 958 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1618 | |||
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| KOG0437|consensus | 1080 | 100.0 | ||
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0433|consensus | 937 | 100.0 | ||
| KOG0432|consensus | 995 | 100.0 | ||
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| KOG0434|consensus | 1070 | 100.0 | ||
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| KOG0435|consensus | 876 | 100.0 | ||
| KOG0437|consensus | 1080 | 100.0 | ||
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| KOG0432|consensus | 995 | 100.0 | ||
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| KOG0436|consensus | 578 | 100.0 | ||
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| KOG0433|consensus | 937 | 100.0 | ||
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| KOG1247|consensus | 567 | 100.0 | ||
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 99.97 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 99.97 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 99.97 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 99.97 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 99.97 | |
| KOG0436|consensus | 578 | 99.97 | ||
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 99.97 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 99.97 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 99.96 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 99.96 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 99.95 | |
| PLN02224 | 616 | methionine-tRNA ligase | 99.95 | |
| KOG0434|consensus | 1070 | 99.95 | ||
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 99.94 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 99.94 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 99.94 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 99.94 | |
| KOG2007|consensus | 586 | 99.93 | ||
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 99.93 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 99.93 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 99.92 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 99.92 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 99.88 | |
| KOG0435|consensus | 876 | 99.86 | ||
| KOG1247|consensus | 567 | 99.82 | ||
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.8 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 99.78 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 99.73 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 99.67 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.66 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 99.59 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 99.59 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 99.56 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 99.56 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 99.55 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.54 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.54 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 99.51 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.44 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 99.36 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 99.35 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 99.33 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 99.33 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 99.32 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 99.31 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 99.31 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 99.31 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 99.3 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.29 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 99.29 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 99.27 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.25 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 99.21 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 99.2 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.19 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 99.15 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 99.11 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 99.11 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 99.1 | |
| KOG2007|consensus | 586 | 99.09 | ||
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 99.09 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 99.09 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 99.09 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 99.07 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 99.05 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 99.04 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 99.0 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 98.97 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 98.96 | |
| PF13603 | 185 | tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P | 98.9 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 98.79 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 98.7 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 98.64 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 98.53 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 98.43 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 98.3 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 98.28 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 98.09 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 97.88 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 97.46 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 97.36 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 97.01 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 97.0 | |
| KOG1195|consensus | 567 | 96.98 | ||
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 96.91 | |
| PLN02286 | 576 | arginine-tRNA ligase | 96.88 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 96.8 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 96.77 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 96.66 | |
| KOG4426|consensus | 656 | 96.64 | ||
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 96.53 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 96.47 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 96.43 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 96.36 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 96.32 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 96.31 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 96.28 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 96.27 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 96.25 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 96.21 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 96.14 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 96.03 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 95.9 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 95.8 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 95.7 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 95.67 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 95.4 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 95.36 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 94.72 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 94.42 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 93.97 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 91.61 | |
| PF13603 | 185 | tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P | 91.53 | |
| KOG1147|consensus | 712 | 91.3 | ||
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 87.45 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 86.39 | |
| KOG1148|consensus | 764 | 85.68 | ||
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 80.94 |
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-157 Score=1559.31 Aligned_cols=959 Identities=52% Similarity=0.898 Sum_probs=797.9
Q ss_pred CCCccccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccc
Q psy5309 1 VERKGTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGD 80 (1618)
Q Consensus 1 ~~~~~~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1618)
.+++||.|++.|.++|++||++|+++++|+++++.+.
T Consensus 4 ~~~~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~------------------------------------------- 40 (1084)
T PLN02959 4 EGGKSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEP------------------------------------------- 40 (1084)
T ss_pred ccccCCchhcCHHHHHHHHHHHHHhcCCcccCccccc-------------------------------------------
Confidence 3789999999999999999999999999999876421
Q ss_pred cccCCCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCC
Q psy5309 81 AVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQ 160 (1618)
Q Consensus 81 ~~~~~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~ 160 (1618)
+.++++|++++||||+||.||||||+|++++|+++||+||+||+|+|+|||||||+||+.+|+|++++++.+|+++.
T Consensus 41 ---~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~ 117 (1084)
T PLN02959 41 ---PKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPV 117 (1084)
T ss_pred ---CCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcc
Confidence 12358899999999999999999999999999999999999999999999999999999999999988988998887
Q ss_pred CCCCCCCCCCCCC------CCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHH
Q psy5309 161 FPSEDTEPQTDKD------DDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQD 234 (1618)
Q Consensus 161 ~~e~~~~~~~~~~------~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~ 234 (1618)
||+........+. .......++++++.++..++.+..++|+++|+++|++++++.+|.+|..|+++|...|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~ 197 (1084)
T PLN02959 118 FPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKED 197 (1084)
T ss_pred cccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHH
Confidence 8743111110000 0011112356677777777778878999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEee
Q psy5309 235 LRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRL 314 (1618)
Q Consensus 235 l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~ 314 (1618)
|++||+++||+|+|.|+|.||+|+++|+|+|.+|+++|+||+|.|||+|||+|+|+|||||++++++++|++|+.++|++
T Consensus 198 ~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v 277 (1084)
T PLN02959 198 LKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEV 277 (1084)
T ss_pred HHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCee
Q psy5309 315 VKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 394 (1618)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~ 394 (1618)
.++.+..+..+.+++.+|+|||||||||||||||||||++.|+.++. .
T Consensus 278 ~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~-~------------------------------- 325 (1084)
T PLN02959 278 LPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEI-N------------------------------- 325 (1084)
T ss_pred cCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEe-c-------------------------------
Confidence 65433333233445679999999999999999999999999998743 1
Q ss_pred EEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccc
Q psy5309 395 AFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNT 474 (1618)
Q Consensus 395 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~ 474 (1618)
+++++|++++++.++.||+.....+..+++.+++|.++. |.++..+++
T Consensus 326 -----~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~--G~~~~~Pl~------------------------- 373 (1084)
T PLN02959 326 -----DTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLI--GLPLKSPLA------------------------- 373 (1084)
T ss_pred -----CCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhC--CCEEECCCC-------------------------
Confidence 234566667777777777654444456788888888888 777775554
Q ss_pred cchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCc
Q psy5309 475 YHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTP 554 (1618)
Q Consensus 475 ~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg 554 (1618)
|+. .++++|. .+|+++.|||
T Consensus 374 ---------------------------~~~-------------------~i~ilp~--------------~~V~~~~GTG 393 (1084)
T PLN02959 374 ---------------------------FNE-------------------VIYALPM--------------LTILTDKGTG 393 (1084)
T ss_pred ---------------------------CCc-------------------ceeEece--------------EEEeCCCCee
Confidence 111 1226665 6899999999
Q ss_pred ceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCc
Q psy5309 555 EVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGT 634 (1618)
Q Consensus 555 ~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1618)
+| |+ +|+|+ |+||.++.+|++|.+++++|
T Consensus 394 vV------~~--------vPah~------------pdDy~~~~dl~~k~~~~~ky------------------------- 422 (1084)
T PLN02959 394 VV------TS--------VPSDS------------PDDYMALSDLKAKPALRAKY------------------------- 422 (1084)
T ss_pred eE------Ee--------CCCCC------------HHHHHHHHhhccchhHHHHc-------------------------
Confidence 99 99 99999 99999999999999999999
Q ss_pred cccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCC
Q psy5309 635 FRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKG 714 (1618)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G 714 (1618)
||+. +++++++++|+|++||+|+++|+.+|+++||.||+|+++|+|||+.+|++||++|+|++|+|+|
T Consensus 423 -----gi~~-------~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G 490 (1084)
T PLN02959 423 -----GVKD-------EWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAG 490 (1084)
T ss_pred -----CCCc-------ccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCC
Confidence 6543 3667889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCC
Q psy5309 715 KKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDE 794 (1618)
Q Consensus 715 ~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~ 794 (1618)
++|++||++|+++|++.|++ +.+++|..+ |++||| .
T Consensus 491 ~~v~eAr~~Ii~~L~~~G~l---------~~~~ep~~p------------v~~R~g-----------------------~ 526 (1084)
T PLN02959 491 RKVQEAKPLIKKKLIEAGQA---------ILYSEPEKK------------VMSRSG-----------------------D 526 (1084)
T ss_pred cCHHHHHHHHHHHHHhCCCc---------eeeeEcCCC------------eEECCC-----------------------C
Confidence 99999999999999999954 345556544 889999 9
Q ss_pred eEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceE
Q psy5309 795 MCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 795 ~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
.|++.+++||||+|++++||+++++++++|+|+|++++++|.+||+|++||||||||+||||||+|+.|++++++|+++|
T Consensus 527 ~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy 606 (1084)
T PLN02959 527 ECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIY 606 (1084)
T ss_pred EEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCcee
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccc
Q psy5309 875 MAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQ 954 (1618)
Q Consensus 875 ~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~ 954 (1618)
|++++++|+++.+...|.... .++++++.+++|||||+|+....+ .+++.+.++.++++|++|||+|++++|+||++
T Consensus 607 ~a~yti~~~~~~~~~~g~~~~--~i~~~~~~~dV~D~wF~Sg~~p~~-t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~ 683 (1084)
T PLN02959 607 MAYYTVAHLLQGGDMYGKDKS--SIKPEQMTDEVWDFVFCGGPLPKS-SDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQ 683 (1084)
T ss_pred echhhHHHHHhhhhccCCccc--cCChhhcCccceeEeecCCCcccc-cCCCHHHHhhhhHHHHhhCCCeEEEecccHHH
Confidence 999999999986544454422 467788899999999999863322 36677778888899999999999999999999
Q ss_pred cchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCc
Q psy5309 955 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPR 1034 (1618)
Q Consensus 955 ~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk 1034 (1618)
+|+.|++++|.++| +.
T Consensus 684 ~wl~~~l~~~~al~---------------------------------------------------------~~------- 699 (1084)
T PLN02959 684 NHLTFAIYNHTAIW---------------------------------------------------------AE------- 699 (1084)
T ss_pred HHHHHHHHHHHHhc---------------------------------------------------------CC-------
Confidence 99887776665553 10
Q ss_pred EEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcc
Q psy5309 1035 GIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQS 1114 (1618)
Q Consensus 1035 ~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~ 1114 (1618)
T Consensus 700 -------------------------------------------------------------------------------- 699 (1084)
T PLN02959 700 -------------------------------------------------------------------------------- 699 (1084)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcC
Q psy5309 1115 TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLC 1194 (1618)
Q Consensus 1115 ~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLa 1194 (1618)
T Consensus 700 -------------------------------------------------------------------------------- 699 (1084)
T PLN02959 700 -------------------------------------------------------------------------------- 699 (1084)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCccee
Q psy5309 1195 PVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1274 (1618)
Q Consensus 1195 P~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~l 1274 (1618)
.++|+.+.+||||+.+|+|||||+||||+|.++|++||||++
T Consensus 700 --------------------------------------~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADal 741 (1084)
T PLN02959 700 --------------------------------------EHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADAT 741 (1084)
T ss_pred --------------------------------------CCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHH
Confidence 023567778888888899999999999999999999999999
Q ss_pred eeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCC
Q psy5309 1275 RLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRT 1354 (1618)
Q Consensus 1275 Rl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1354 (1618)
||||+++++..+|++|+++.+..+..++++. ++|+..........+.
T Consensus 742 Rl~la~~~~~~~D~nF~~k~~n~~~~~l~n~---------------------------------~~~~~~~~~~~~~~~~ 788 (1084)
T PLN02959 742 RFALADAGDGVDDANFVFETANAAILRLTKE---------------------------------IAWMEEVLAAESSLRT 788 (1084)
T ss_pred HHHHhhcCCccCCCCccHHHHHHHHHHHHHH---------------------------------HHHHHHhhhhhcccCC
Confidence 9999999899999999998765544333322 2222222111000111
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcch
Q psy5309 1355 GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCP 1434 (1618)
Q Consensus 1355 ~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P 1434 (1618)
...+..+|+|++++++.++++++++|++|+|++|++..+|+ ++..+
T Consensus 789 ~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~~Ye--------l~~~k-------------------------- 834 (1084)
T PLN02959 789 GPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSGFYD--------LQAAR-------------------------- 834 (1084)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH--------HHHhH--------------------------
Confidence 22245789999999999999999999999999999986422 22221
Q ss_pred hhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHH
Q psy5309 1435 HVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVY 1514 (1618)
Q Consensus 1435 ~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw 1514 (1618)
+ +|+.|+.+ .++++++|.++|+.+++|||||+||+|||||
T Consensus 835 -----------------------------~----------~yr~~~~~-~~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW 874 (1084)
T PLN02959 835 -----------------------------D----------EYRLSCGS-GGMNRDLVWRFMDVQTRLITPICPHYAEHVW 874 (1084)
T ss_pred -----------------------------H----------HHhhcccc-chHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 1 11222211 1257889999999999999999999999999
Q ss_pred HHc-CCCCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCCCcccccCCceEEEEEcccC
Q psy5309 1515 QLL-GKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTF 1593 (1618)
Q Consensus 1515 ~~l-~~~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~~~~~~~~~~~~~v~~~~~~ 1593 (1618)
+.| ++++||+.+.||.++.+|+.++++++.+++++.++|+.++++++.+|++|+.+..+ ..-.++.+++|||+.+|
T Consensus 875 ~~l~~~~~sI~~~~wP~~~~~d~~~e~~~~~l~~~i~~iR~~~~~~~~~~~~~k~~~~~~---~~~~~~~~v~IyVA~~y 951 (1084)
T PLN02959 875 REILKKEGFAVTAGWPVAGEPDLTLKRANKYLQDSIVSFRKLLQKQLAGSKKAKKGGAPV---TLPEKKLAGLIYVAEKY 951 (1084)
T ss_pred HhccCCCCeEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHhHHHhchhhhhcCCCCCCc---ccccCcceEEEEECCCC
Confidence 988 56789999999998877888999999999999999999999988888776543321 22344667999999999
Q ss_pred ChhHHHHHHHHHHHHhcc
Q psy5309 1594 PPWQSIVLTTMKQMMEVR 1611 (1618)
Q Consensus 1594 ~~~~~~~~~~~~~~~~~~ 1611 (1618)
|+||.+++++++++++++
T Consensus 952 p~Wq~~~l~~l~e~~~~~ 969 (1084)
T PLN02959 952 DGWKEECLRILQSKFDSQ 969 (1084)
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 999999999999988543
|
|
| >KOG0437|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-155 Score=1360.01 Aligned_cols=949 Identities=54% Similarity=0.947 Sum_probs=846.0
Q ss_pred CCccccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhcccc
Q psy5309 2 ERKGTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDA 81 (1618)
Q Consensus 2 ~~~~~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1618)
|+++|.|++.|.+||+++|++|+++++||.+... +.
T Consensus 4 e~k~~ar~d~L~eiEk~~q~~W~~e~~fevda~~-el------------------------------------------- 39 (1080)
T KOG0437|consen 4 ELKSTARRDSLLEIEKKYQKKWDTEKVFEVDAPN-EL------------------------------------------- 39 (1080)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhheeccCch-hc-------------------------------------------
Confidence 6899999999999999999999999999988754 11
Q ss_pred ccCCCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCC
Q psy5309 82 VRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQF 161 (1618)
Q Consensus 82 ~~~~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~ 161 (1618)
++.++||++++|+||+||.||+||+++.+..|+.+-|+||+|++|+|||||||+|+||...|+|++|+++.+|.++.|
T Consensus 40 --~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf 117 (1080)
T KOG0437|consen 40 --QKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDF 117 (1080)
T ss_pred --ccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCC
Confidence 134678888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC--CCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcC
Q psy5309 162 PSEDTEPQTDKD--DDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIG 239 (1618)
Q Consensus 162 ~e~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lG 239 (1618)
|++..+. ...+ .++.....+++|++++..||.+..+|||++|+++|++++||.+|.++.+|..+|.....++|+++|
T Consensus 118 ~~e~eeE-v~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~g 196 (1080)
T KOG0437|consen 118 PEEEEEE-VEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFG 196 (1080)
T ss_pred chhhhhh-hhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhC
Confidence 9863221 1111 122333458999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCc
Q psy5309 240 IHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYP 319 (1618)
Q Consensus 240 i~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~ 319 (1618)
+.+||+|+|+|+|.||+|++||+|+|.+|.+.|.|..|+|.++|||+++++|+|||+..||+|+|++|+++|+++.++++
T Consensus 197 l~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p 276 (1080)
T KOG0437|consen 197 LGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFP 276 (1080)
T ss_pred CCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcC
Q psy5309 320 AKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTA 399 (1618)
Q Consensus 320 ~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~ 399 (1618)
.++..+.+.+.++++||.|||||+|.|+.+|+|+..|..++ ..
T Consensus 277 ~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe-------------------------------------~~ 319 (1080)
T KOG0437|consen 277 KALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFE-------------------------------------AC 319 (1080)
T ss_pred hhccccccceeeeeehhcCCccccCccceEEcCCccEEeEE-------------------------------------ec
Confidence 88776665567888888888888888888888887666652 22
Q ss_pred -CCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchh
Q psy5309 400 -TGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDE 478 (1618)
Q Consensus 400 -~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~ 478 (1618)
..+++|++++++.||.|||++.+.+....+.++.|..++ |..+.
T Consensus 320 ~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~i--Ga~l~--------------------------------- 364 (1080)
T KOG0437|consen 320 NETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLI--GAPLS--------------------------------- 364 (1080)
T ss_pred CCceEEEeehHHHhhcchhhccccCCcccceeeecchhhc--CCccc---------------------------------
Confidence 246789999999999999999888777777777777766 22211
Q ss_pred hhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceee
Q psy5309 479 VRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWD 558 (1618)
Q Consensus 479 ~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~ 558 (1618)
-| .++|.-+|+||. .+|..++|||+|
T Consensus 365 --------------------------aP------------lsv~~~vy~LPM--------------lTi~~~KGTGvV-- 390 (1080)
T KOG0437|consen 365 --------------------------AP------------LSVYERVYALPM--------------LTILATKGTGVV-- 390 (1080)
T ss_pred --------------------------Cc------------chhhheeeeccc--------------eeeeccCCceeE--
Confidence 35 567888899998 789999999999
Q ss_pred eeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccC
Q psy5309 559 YVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 638 (1618)
Q Consensus 559 ~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1618)
.| ||+++ |+||..+.+|++++++ |
T Consensus 391 ----ts--------Vpsds------------PDDf~al~dL~kK~~l---Y----------------------------- 414 (1080)
T KOG0437|consen 391 ----TS--------VPSDS------------PDDFAALQDLKKKPEL---Y----------------------------- 414 (1080)
T ss_pred ----Ee--------CCCCC------------chhhhHHHhhhhcccc---c-----------------------------
Confidence 88 99999 9999999999999877 7
Q ss_pred CCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchH
Q psy5309 639 NGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQ 718 (1618)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~ 718 (1618)
|+..+ ++. +++||||.+|+||+++|+.+|++++|.||+|+++|+|||+.+|.+||++|+|.+|+|.|.+|.
T Consensus 415 -g~~~e-------w~~-~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe 485 (1080)
T KOG0437|consen 415 -GLKPE-------WVL-FEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVE 485 (1080)
T ss_pred -CCChh-------hcc-ccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHH
Confidence 77653 554 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEE
Q psy5309 719 EVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVV 798 (1618)
Q Consensus 719 ~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~ 798 (1618)
+|+++|..+|++.| .+..|.+|+.+ |.|||| +.|++
T Consensus 486 ~~K~~i~~~li~~g---------~a~~y~EPEkq------------VmSRSG-----------------------deCiV 521 (1080)
T KOG0437|consen 486 DAKPKIKTDLIETG---------DALKYNEPEKQ------------VMSRSG-----------------------DECIV 521 (1080)
T ss_pred hhhhHHHHHHHhcc---------cceeecCcchh------------hhccCC-----------------------CceEE
Confidence 99999999999999 78999999998 999999 99999
Q ss_pred eccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehh
Q psy5309 799 ALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYY 878 (1618)
Q Consensus 799 ~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ 878 (1618)
+|||||||+|++.+||+.+.+++++++..-+.+|+-|...|+|+..|+|||+.+.||+||||++|++||||||||||++|
T Consensus 522 AL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyY 601 (1080)
T KOG0437|consen 522 ALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYY 601 (1080)
T ss_pred EeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchh
Q psy5309 879 TVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLT 958 (1618)
Q Consensus 879 ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~ 958 (1618)
|++|++.+ ++.|....+++++++++.+++|||+|...+..+ ...++.+.+..++++|+||||.|++++|||.+.|||+
T Consensus 602 TvaHll~~-d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLt 679 (1080)
T KOG0437|consen 602 TVAHLLHR-DLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPK-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLT 679 (1080)
T ss_pred HHHHHHHH-hhccCCcccCCCChhhcCHHHHHHhhccCCCCc-CCCccHHHHHHHHHhhhcccceeeeecccccccccee
Confidence 99999986 899999999999999999999999999887665 6778889999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEE
Q psy5309 959 FFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRA 1038 (1618)
Q Consensus 959 f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~ 1038 (1618)
|++|+|++|| | .
T Consensus 680 fflynHvAl~---------------------------------------------------------~--~--------- 691 (1080)
T KOG0437|consen 680 FFLYNHVALF---------------------------------------------------------P--E--------- 691 (1080)
T ss_pred Eeeeehhhhc---------------------------------------------------------c--c---------
Confidence 9999998886 1 0
Q ss_pred ccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCC
Q psy5309 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRT 1118 (1618)
Q Consensus 1039 hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~ 1118 (1618)
T Consensus 692 -------------------------------------------------------------------------------- 691 (1080)
T KOG0437|consen 692 -------------------------------------------------------------------------------- 691 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCC
Q psy5309 1119 GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCP 1198 (1618)
Q Consensus 1119 ~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P 1198 (1618)
T Consensus 692 -------------------------------------------------------------------------------- 691 (1080)
T KOG0437|consen 692 -------------------------------------------------------------------------------- 691 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeeh
Q psy5309 1199 HVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1278 (1618)
Q Consensus 1199 ~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l 1278 (1618)
..||+.+.+|||++.|++|||||.||+.+..+.|++||||+.|+.|
T Consensus 692 ----------------------------------k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlal 737 (1080)
T KOG0437|consen 692 ----------------------------------KKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLAL 737 (1080)
T ss_pred ----------------------------------ccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeee
Confidence 1245666677777778889999999999999999999999999999
Q ss_pred hccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCC
Q psy5309 1279 ADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQD 1358 (1618)
Q Consensus 1279 ~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1358 (1618)
|..++...|. ||+.++++.+|+||++..+|+++...+...++.+...
T Consensus 738 AdaGD~veDA---------------------------------NF~ea~AnAaILRLyt~~ew~eEm~~~~s~LrtGp~~ 784 (1080)
T KOG0437|consen 738 ADAGDGVEDA---------------------------------NFVEANANAAILRLYTYVEWIEEMCENRSSLRTGPAS 784 (1080)
T ss_pred ecccCCcccc---------------------------------hhHHhcccHHHHHHHHHHHHHHHHHhhHHhhccCchh
Confidence 9998875554 5566678889999999999999998876667766555
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHH
Q psy5309 1359 SFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAE 1438 (1618)
Q Consensus 1359 ~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~ 1438 (1618)
.+.|+.|.+++|.++....++|+...|+.|++..+|+|..+.+.|.++|.
T Consensus 785 ~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaArD~Yrel~g------------------------------ 834 (1080)
T KOG0437|consen 785 TFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARDMYRELCG------------------------------ 834 (1080)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhc------------------------------
Confidence 68999999999999999999999999999999999999988888887662
Q ss_pred HHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcC
Q psy5309 1439 HVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1518 (1618)
Q Consensus 1439 ~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~ 1518 (1618)
.+|+..++.+.++++++||+||+||+||.||+.+.
T Consensus 835 ---------------------------------------------~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~ 869 (1080)
T KOG0437|consen 835 ---------------------------------------------EGMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVL 869 (1080)
T ss_pred ---------------------------------------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 34899999999999999999999999999999777
Q ss_pred CCCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCCCcccccCCceEEEEEcccCChhHH
Q psy5309 1519 KKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQS 1598 (1618)
Q Consensus 1519 ~~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1598 (1618)
++++.....||..++.++.+..+..++++.+..+|....+++-..+++| + ++.+ .++|.+++|||+.+||+||.
T Consensus 870 ~~~~~v~~~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~~~~~kkkk~-K----~~~~-~~~p~~~ti~Vae~fp~Wq~ 943 (1080)
T KOG0437|consen 870 KKNFSVNVGWPFVSPPDEKLGSSALYLKRTLKRLRAELEKQMLKKKKKK-K----GAEV-PSKPLKLTIYVAEEFPEWQA 943 (1080)
T ss_pred cCCceeecCCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhhchhhccc-C----CCCC-CCCcceEEEEEeccCCHHHH
Confidence 6666666699999988888888888999999999999888765543222 1 2233 67889999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy5309 1599 IVLTTMKQMMEV 1610 (1618)
Q Consensus 1599 ~~~~~~~~~~~~ 1610 (1618)
..+++|+..+..
T Consensus 944 ~cl~il~k~~~e 955 (1080)
T KOG0437|consen 944 QCLSILQKIFCE 955 (1080)
T ss_pred HHHHHHHHHHHH
Confidence 999999998854
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-136 Score=1353.74 Aligned_cols=841 Identities=37% Similarity=0.664 Sum_probs=699.0
Q ss_pred HHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCeEEe
Q psy5309 14 KIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKFFTT 93 (1618)
Q Consensus 14 ~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~ 93 (1618)
++|++||++|+++++|+.+++. +++|+|+
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~~---------------------------------------------------~~kf~i~ 30 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPDD---------------------------------------------------REKFFLT 30 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCCC---------------------------------------------------CCceEEe
Confidence 6899999999999999986532 5789999
Q ss_pred CCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q psy5309 94 FPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKD 173 (1618)
Q Consensus 94 ~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~ 173 (1618)
+|||||||.|||||++|++++|+++||+||+||+|+|++||||||+||+..|++++++.+..+ + .|+
T Consensus 31 ~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~-~-~~~----------- 97 (938)
T TIGR00395 31 MAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTI-K-NYT----------- 97 (938)
T ss_pred cCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhcc-c-cch-----------
Confidence 999999999999999999999999999999999999999999999999999998754322111 0 000
Q ss_pred CCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceeecCC
Q psy5309 174 DDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDS 253 (1618)
Q Consensus 174 ~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~ 253 (1618)
...+++.+++.+|++|.+|+++|...++++|++||+++||+|+|+|+|
T Consensus 98 -------------------------------~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~d- 145 (938)
T TIGR00395 98 -------------------------------EVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTD- 145 (938)
T ss_pred -------------------------------hhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCC-
Confidence 123678899999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCCcEEE
Q psy5309 254 NPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLV 333 (1618)
Q Consensus 254 ~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (1618)
|.|.++|+|+|.+|+++|+||+|.+||+|||.|+|+|||||+++++++++++|+.++|++. +.+.+|+
T Consensus 146 -p~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~-----------~~~~~l~ 213 (938)
T TIGR00395 146 -PYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELE-----------DGAFYFV 213 (938)
T ss_pred -hhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcC-----------CCceEEE
Confidence 8899999999999999999999999999999999999999999999999999999999853 1235899
Q ss_pred EeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccc
Q psy5309 334 AATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARN 413 (1618)
Q Consensus 334 i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~ 413 (1618)
|||||||||+|+|||||||+++|+.+.. + ++.+|++++++.+
T Consensus 214 ~aTtRPETl~g~tav~V~P~~~Y~~~~~--~------------------------------------~e~~i~s~~~~~~ 255 (938)
T TIGR00395 214 AATLRPETVYGVTNCWVNPTITYVIAEV--G------------------------------------GEKWITSKEAFEN 255 (938)
T ss_pred EeeCCcchhhcceeEEECCCCcEEEEEe--C------------------------------------CcEEEEeHHHHHh
Confidence 9999999999999999999999998743 1 2345666666667
Q ss_pred cccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccc
Q psy5309 414 MAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEY 493 (1618)
Q Consensus 414 ~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dW 493 (1618)
+.|++.. .+++.+++|..+. |..+..+++
T Consensus 256 ~~~q~~~-----~~~~~~~~g~~l~--G~~~~~P~~-------------------------------------------- 284 (938)
T TIGR00395 256 LSYQKLK-----YKPIEEVPGKQFI--GKKVHNPVV-------------------------------------------- 284 (938)
T ss_pred hhhcccc-----eeEEEEEchHhcc--CCEEECCCC--------------------------------------------
Confidence 7777642 4566777777777 666665443
Q ss_pred eeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCC
Q psy5309 494 ACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRV 573 (1618)
Q Consensus 494 ciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~ 573 (1618)
|..+| ++++ ++|+++.|||+| |+ +
T Consensus 285 --------~~~ip--------------------il~~--------------~~V~~~~GTGvV------~~--------~ 308 (938)
T TIGR00395 285 --------GPEVP--------------------ILPA--------------EFVDTTKGTGVV------MS--------V 308 (938)
T ss_pred --------CCeeE--------------------Eeec--------------ceeecCCCcceE------Ee--------C
Confidence 12244 7765 899999999999 99 9
Q ss_pred ChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeec
Q psy5309 574 PKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQV 653 (1618)
Q Consensus 574 p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1618)
|+|+ |+||.++.+|.++.+. | |++. .+
T Consensus 309 Pah~------------p~Dy~~~~~l~~~~~~---~------------------------------gi~~--------~~ 335 (938)
T TIGR00395 309 PAHA------------PDDYIALEDLLHDPEY---L------------------------------GIKP--------VV 335 (938)
T ss_pred CCCC------------HHHHHHHHHhhhcchh---c------------------------------CCcc--------hh
Confidence 9999 9999999886554222 4 5432 23
Q ss_pred cCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHHHHHHHHHh
Q psy5309 654 LPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKLLQKKIDII 731 (1618)
Q Consensus 654 ~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~i~~~L~~~ 731 (1618)
.+++++++|++|++|+++|+.+|+++||+||+|+.+|+|||+.+|++||++|+|+ +|+|+|++|++||++|+++|++.
T Consensus 336 ~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~ 415 (938)
T TIGR00395 336 IDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDA 415 (938)
T ss_pred cccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHC
Confidence 4677899999999999999999999999999999999999999999999999998 46999999999999999999999
Q ss_pred CCcccCCCcccceeeecc-cccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-ccCcceeecC
Q psy5309 732 GVALKAPVTSHSVIYTLP-MLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-LCDQWYLDYG 809 (1618)
Q Consensus 732 g~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-~~~QWfi~~~ 809 (1618)
|+ +..++++ +.+ |+|||| ..|++. +++||||+++
T Consensus 416 g~---------~~~~~~~~~~~------------v~~R~g-----------------------~~~vv~~~~~QWFi~~~ 451 (938)
T TIGR00395 416 GL---------ADVMYEFSESP------------VICRCG-----------------------TDCIVKVVEDQWFVKYS 451 (938)
T ss_pred CC---------ceEeeecCCCC------------cEecCC-----------------------CeEEEeccCCCCeEEcC
Confidence 95 4445555 434 889999 888887 9999999998
Q ss_pred CchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCcc
Q psy5309 810 EPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTF 889 (1618)
Q Consensus 810 ~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~ 889 (1618)
+++||+++++++++++|+|+.+++++.+||+|++||||||||+||||||+|+.|+|++++|+++|||+++++++++..
T Consensus 452 ~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~-- 529 (938)
T TIGR00395 452 DESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKD-- 529 (938)
T ss_pred cHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhcc--
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred CCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccC
Q psy5309 890 RGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWG 969 (1618)
Q Consensus 890 ~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~ 969 (1618)
++.++++.++++||||.+..... ..+++...+..++++|++|||+|++++|+|++++|+.|.++.|+++|
T Consensus 530 --------~~~~~~l~~ev~D~~~~~~~~~~-~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~- 599 (938)
T TIGR00395 530 --------YYGNEQMTDEFFDYIFLGKGDVK-NTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIF- 599 (938)
T ss_pred --------CCChHHCCcccCceEEECCCChh-hcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcC-
Confidence 23455778999999998765443 44667666767788999999999999999999999877554433332
Q ss_pred CCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccc
Q psy5309 970 DEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKM 1049 (1618)
Q Consensus 970 ~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KM 1049 (1618)
|
T Consensus 600 --------------------------------------------------------~----------------------- 600 (938)
T TIGR00395 600 --------------------------------------------------------P----------------------- 600 (938)
T ss_pred --------------------------------------------------------C-----------------------
Confidence 1
Q ss_pred eeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHH
Q psy5309 1050 SKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129 (1618)
Q Consensus 1050 SKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~ 1129 (1618)
T Consensus 601 -------------------------------------------------------------------------------- 600 (938)
T TIGR00395 601 -------------------------------------------------------------------------------- 600 (938)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhC
Q psy5309 1130 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209 (1618)
Q Consensus 1130 l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lg 1209 (1618)
T Consensus 601 -------------------------------------------------------------------------------- 600 (938)
T TIGR00395 601 -------------------------------------------------------------------------------- 600 (938)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcc
Q psy5309 1210 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDAN 1289 (1618)
Q Consensus 1210 kd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~ 1289 (1618)
...+|+.+++|||++++|+|||||+||+|+|.+++++||||++||||++++++++|++
T Consensus 601 ----------------------~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~ 658 (938)
T TIGR00395 601 ----------------------EKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDAD 658 (938)
T ss_pred ----------------------ccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCC
Confidence 0123688889999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHH
Q psy5309 1290 FVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEM 1369 (1618)
Q Consensus 1290 fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l 1369 (1618)
||++.+.+..+.+++. +|+ +++ +....++. ........|+|+++++
T Consensus 659 fs~~~~~~~~~~l~~l---------~n~---~~~------------------~~~~~~~~----~~~~~~~~D~wlls~l 704 (938)
T TIGR00395 659 WKESEVEGTILRLERL---------YEF---AEE------------------ITKESNLE----TGEETSFIDRWLESRM 704 (938)
T ss_pred cCHHHHHHHHHHHHHH---------HHH---HHH------------------HHhhcccC----CCccCChHHHHHHHHH
Confidence 9999887765544321 111 111 11111111 0112456799999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhccccc
Q psy5309 1370 NLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKET 1449 (1618)
Q Consensus 1370 ~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~ 1449 (1618)
+.+++++.++|++|+|++|++..+++|...+|+|+...+
T Consensus 705 ~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~----------------------------------------- 743 (938)
T TIGR00395 705 NAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGG----------------------------------------- 743 (938)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCc-----------------------------------------
Confidence 999999999999999999995544688877777764321
Q ss_pred chhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCCceEeccCC
Q psy5309 1450 EDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWP 1529 (1618)
Q Consensus 1450 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~sv~~~~~p 1529 (1618)
. ..+.++.++++.+++|||||+||+|||+|+.|++++||+.+.||
T Consensus 744 --------------~---------------------~~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~~sv~~~~wP 788 (938)
T TIGR00395 744 --------------V---------------------NHKDVLARYLETWIKLLAPFAPHFAEEMWEEVGNEGFVSLAKFP 788 (938)
T ss_pred --------------c---------------------hHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCCeEEecCCC
Confidence 1 12346789999999999999999999999999888899999999
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCCCcccccCCceEEEEEcccCChhHHHHHHHHHHH
Q psy5309 1530 EGGP--IDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQSIVLTTMKQM 1607 (1618)
Q Consensus 1530 ~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 1607 (1618)
+++. +|+.++++++.+++++.++|+..+ +....|.++.|+++ ++||.+++.++++.
T Consensus 789 ~~~~~~~d~~~~~~~~~~~~~i~~iR~~~~-------------------~~~~~p~~~~i~~~---~~w~~~~~~~~~~~ 846 (938)
T TIGR00395 789 EASEPAVDKEVEAAEEYLRNLVRDIQEIAK-------------------IDASKPKRVYLYTS---EDWKSQCLKIVAEL 846 (938)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHHhhc-------------------cCCCCCcEEEEEEC---cHHHHHHHHHHHHH
Confidence 9874 389999999999999999998421 12234567888888 58999999999886
Q ss_pred Hh
Q psy5309 1608 ME 1609 (1618)
Q Consensus 1608 ~~ 1609 (1618)
.+
T Consensus 847 ~~ 848 (938)
T TIGR00395 847 FG 848 (938)
T ss_pred hc
Confidence 54
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-136 Score=1296.67 Aligned_cols=788 Identities=20% Similarity=0.291 Sum_probs=615.8
Q ss_pred ccccchhhhHHHHHHHHHHhHhCCCccccCC-CcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccc
Q psy5309 4 KGTFKVEYLQKIEKEVQEEWDREKIYEETVG-DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV 82 (1618)
Q Consensus 4 ~~~~~~~~~~~~E~~~~~~W~~~~if~~~~~-~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1618)
.+|-|+.+|+++|++|+++|+++++|++..+ .
T Consensus 12 T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~----------------------------------------------- 44 (933)
T COG0060 12 TDFPMRANLPKKEPKILKFWEENDIYEKIREER----------------------------------------------- 44 (933)
T ss_pred CCCCccCChhhcCHHHHHHHHHhhHHHHHHHHH-----------------------------------------------
Confidence 3578999999999999999999999999884 3
Q ss_pred cCCCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCC
Q psy5309 83 RSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFP 162 (1618)
Q Consensus 83 ~~~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~ 162 (1618)
++++++|+++++|||+||.+|||||+|++++|++.||+.|+||+|.+.|||||||+|||..+++. +|+..
T Consensus 45 -~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~------lg~~k--- 114 (933)
T COG0060 45 -NKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKK------LGIGK--- 114 (933)
T ss_pred -hCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHH------hCCCc---
Confidence 23589999999999999999999999999999999999999999999999999999999999872 34321
Q ss_pred CCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcc
Q psy5309 163 SEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHV 242 (1618)
Q Consensus 163 e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~ 242 (1618)
++ ....+.+++++.| ++++..+++.|+++++|||++.
T Consensus 115 --------------------------~~---------------i~~~~~~efr~~C--r~~a~~~v~~q~~~f~RLGv~~ 151 (933)
T COG0060 115 --------------------------KD---------------IESFGVEEFREKC--REFALEQVDEQKEQFKRLGVWG 151 (933)
T ss_pred --------------------------ch---------------hhhcCHHHHHHHH--HHHHHHHHHHHHHHHHhheEee
Confidence 00 0123456677766 6889999999999999999999
Q ss_pred cccCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCcccc
Q psy5309 243 DWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKL 322 (1618)
Q Consensus 243 Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~ 322 (1618)
||+++|.||| |.|++.++|+|++|+++|+||+|.|||+|||+|+||||++|++|++..+|++|+.|++. +.
T Consensus 152 Dw~npY~Tmd--~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~--~~----- 222 (933)
T COG0060 152 DWENPYKTMD--PSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVK--DE----- 222 (933)
T ss_pred ccCCCeecCC--HHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEec--cC-----
Confidence 9999999999 78999999999999999999999999999999999999999999999999998766643 21
Q ss_pred ccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCc
Q psy5309 323 CCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGE 402 (1618)
Q Consensus 323 ~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~ 402 (1618)
. ...+.+|+||||||||||||.|||||||..|+.++. +++.+|+|+.+... ++.
T Consensus 223 ~--~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~--~~~~~IlA~~lve~-~~~--------------------- 276 (933)
T COG0060 223 G--LDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEV--NGEKLILAKALVES-VAK--------------------- 276 (933)
T ss_pred C--CCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEE--CCEEEEEhHHHHHH-HHH---------------------
Confidence 0 235789999999999999999999999999999875 44677777764322 110
Q ss_pred EEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhh
Q psy5309 403 VFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRN 482 (1618)
Q Consensus 403 ~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~ 482 (1618)
-.|.. ..+|+++++|.+|. |.++++++.+- ..+
T Consensus 277 -------------~~~~~----~~~vl~~~kG~~Le--g~~y~hPf~~~---~~~------------------------- 309 (933)
T COG0060 277 -------------KAGVE----DYEVLETFKGSELE--GLRYEHPFYDF---VYD------------------------- 309 (933)
T ss_pred -------------HcCCc----ceEEeEEeehhhhC--CCEeeCCcccc---ccc-------------------------
Confidence 01110 14678888888888 77776655411 000
Q ss_pred HhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeec
Q psy5309 483 FGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFF 562 (1618)
Q Consensus 483 ~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~ 562 (1618)
.++.++.. +||+.+.|||+|
T Consensus 310 ----------------------------------------~~~~v~~g--------------d~VT~d~GTG~V------ 329 (933)
T COG0060 310 ----------------------------------------RAFPVILG--------------DHVTLDDGTGLV------ 329 (933)
T ss_pred ----------------------------------------ceeeEEec--------------CeEecCCCccce------
Confidence 01224432 899999999999
Q ss_pred cCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCC-C
Q psy5309 563 KSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENG-N 641 (1618)
Q Consensus 563 ~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 641 (1618)
|+ +|+|| ++||.++.+ + | +
T Consensus 330 Ht--------APghG------------eeDy~vg~~----------~------------------------------g~l 349 (933)
T COG0060 330 HT--------APGHG------------EEDYEVGKK----------Y------------------------------GLL 349 (933)
T ss_pred ec--------CCCCC------------HHHHHHHHH----------c------------------------------CCc
Confidence 99 99999 999998876 4 3 2
Q ss_pred cccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHH
Q psy5309 642 ALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQE 719 (1618)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~ 719 (1618)
++ +..|+ .+|+++ ++.|+|+.|+|
T Consensus 350 ~v-----------------~~pVD-------------------------------------~~G~yt~~~~~~~G~~v~d 375 (933)
T COG0060 350 EV-----------------LNPVD-------------------------------------DNGRYTEEAPKYEGLFVKD 375 (933)
T ss_pred CC-----------------ccccC-------------------------------------CCccccccchhhCCceecc
Confidence 11 11122 256665 57999999999
Q ss_pred HHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe
Q psy5309 720 VKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA 799 (1618)
Q Consensus 720 a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~ 799 (1618)
|++.|++.|+++|+| ++.++|+||||||||+
T Consensus 376 An~~Ii~~Lk~~g~L-------------------------------------------------l~~e~i~HsYPhcWR~ 406 (933)
T COG0060 376 ANKKIIEDLKEKGNL-------------------------------------------------LKSEKIEHSYPHCWRT 406 (933)
T ss_pred CCHHHHHHHHhCCce-------------------------------------------------eeeeeEEeCCCcccCC
Confidence 999999999999865 6788999999999998
Q ss_pred -------ccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcc
Q psy5309 800 -------LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDST 872 (1618)
Q Consensus 800 -------~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~ 872 (1618)
+|+||||.+ +++|+++++++++++|+|+++++||.+||++++||||||||+||||||+ |+|++++ .
T Consensus 407 ktPlIyRAt~QWFi~v--~~~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi---~~~~~~g--~ 479 (933)
T COG0060 407 KTPLIYRATPQWFVSV--DKLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPV---WYCKETG--E 479 (933)
T ss_pred CCeeEEeecchheeEH--HHHHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeE---EEECCCC--C
Confidence 799999999 6999999999999999999999999999999999999999999999999 9998653 3
Q ss_pred eEe-ehhHHHHHhhcCccCCCC------CccC------CCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhcc
Q psy5309 873 IYM-AYYTVAHLLQGGTFRGEN------GNAL------NIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQY 939 (1618)
Q Consensus 873 iy~-~~~ti~~~l~~~~~~g~~------~~~l------~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1618)
+.+ .....++..+.....|.+ ...+ .......++|++|+||+||+.+....+ +.++ .
T Consensus 480 ~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~---------~ 549 (933)
T COG0060 480 ILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN---------L 549 (933)
T ss_pred eeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc---------c
Confidence 333 233333333211111211 1111 112345567788888887774432222 1111 1
Q ss_pred cccc---ceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchh
Q psy5309 940 WYPV---DLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTF 1016 (1618)
Q Consensus 940 w~p~---Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~ 1016 (1618)
++|. |+|++|.||+||
T Consensus 550 ~~~~~~aD~~lEGsDQ~RG------------------------------------------------------------- 568 (933)
T COG0060 550 KFPALFADFYLEGSDQTRG------------------------------------------------------------- 568 (933)
T ss_pred cCccccCcEEEEeccccch-------------------------------------------------------------
Confidence 2232 555555555555
Q ss_pred hhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHH
Q psy5309 1017 FIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGI 1096 (1618)
Q Consensus 1017 ~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~ 1096 (1618)
T Consensus 569 -------------------------------------------------------------------------------- 568 (933)
T COG0060 569 -------------------------------------------------------------------------------- 568 (933)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q psy5309 1097 LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGG 1176 (1618)
Q Consensus 1097 ~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~ 1176 (1618)
T Consensus 569 -------------------------------------------------------------------------------- 568 (933)
T COG0060 569 -------------------------------------------------------------------------------- 568 (933)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccc
Q psy5309 1177 MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKS 1255 (1618)
Q Consensus 1177 ~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKS 1255 (1618)
||.|+|..+....+.+||++|++|||++| +|+|||||
T Consensus 569 ------------------------------------------WF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKS 606 (933)
T COG0060 569 ------------------------------------------WFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKS 606 (933)
T ss_pred ------------------------------------------hHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCcccc
Confidence 44444444444456788999999999999 99999999
Q ss_pred cCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhh--hhhhcccCCCCcchhhHHHHHhhhhhh
Q psy5309 1256 EGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADG--MRLCLADSGDSVEDANFVESMADAGIL 1333 (1618)
Q Consensus 1256 lGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~--~~~~l~n~gnl~~~~~r~~~~~~~~~~ 1333 (1618)
+||+|+|++++++||||+||||++++ +++.|+.||++++++..+.||..| +||+++|+.+
T Consensus 607 lGN~v~P~~V~~~yGADiLRLwv~ss-d~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~----------------- 668 (933)
T COG0060 607 LGNVVDPQDVIDKYGADILRLWVASS-DYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDD----------------- 668 (933)
T ss_pred CCCcCCHHHHHHhhCchheeeeeeec-CchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------
Confidence 99999999999999999999999998 699999999999999888888543 3444444322
Q ss_pred hhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcc
Q psy5309 1334 RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEG 1411 (1618)
Q Consensus 1334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~ 1411 (1618)
|++.........+..+|+|+|++++.++++++++|++|+|+++++++. +|+. +||+|++
T Consensus 669 ------------fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~-~F~~~dLS~~Yld------ 729 (933)
T COG0060 669 ------------FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALM-NFVSEDLSNWYLD------ 729 (933)
T ss_pred ------------CCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHhhhhHHHHH------
Confidence 232221122345678899999999999999999999999999999985 9994 9999995
Q ss_pred cchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhh-hhhhhhHHHhhhhhhchHHHH
Q psy5309 1412 GMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFEL-QAARDKYRELTAAEGGMHRTL 1490 (1618)
Q Consensus 1412 ~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1490 (1618)
.+|+|+|++ .++.+|++ +|++
T Consensus 730 -------------------------------------------------~~kdr~y~~~~~s~~rra---------a~~~ 751 (933)
T COG0060 730 -------------------------------------------------IIKDRLYTEAADSPDRRA---------AQTT 751 (933)
T ss_pred -------------------------------------------------HHHHHhhhcCCCCHHHHH---------HHHH
Confidence 456777776 66667776 5556
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHcCC---CCceEeccCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5309 1491 VLRFVEVQALLLCPVCPHVAEHVYQLLGK---KGSIVKARWPEGGPI----DDILVRSSSYLMEAAHAFRLQVKNHILTA 1563 (1618)
Q Consensus 1491 l~~~l~~~~~llaPi~P~~aEeiw~~l~~---~~sv~~~~~p~~~~~----~~~l~~~~~~~~~~i~~~R~~~~~~~e~~ 1563 (1618)
|+++|..++++||||+||+|||+||+|+. .+|||++.||+.... +..+...++.+++ +|..++++++.+
T Consensus 752 Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k----~R~~v~~~l~~~ 827 (933)
T COG0060 752 LYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEVDEELIDVEAALAARWEALLK----LRDPVNKALEAA 827 (933)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHhCccCCCCceeEeccCCcccccccchhHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 88999999999999999999999999974 499999999997643 2344444444554 999999999999
Q ss_pred hcccCCccCCCC
Q psy5309 1564 SKKKGKKVGGGG 1575 (1618)
Q Consensus 1564 r~~k~~~~~~~~ 1575 (1618)
|.++.++.++++
T Consensus 828 r~~~~I~~~lna 839 (933)
T COG0060 828 RLEKVIGSSLNA 839 (933)
T ss_pred HhhhHhhhccee
Confidence 998866665543
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-128 Score=1273.48 Aligned_cols=792 Identities=37% Similarity=0.662 Sum_probs=658.5
Q ss_pred chhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhccc
Q psy5309 103 LHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDK 182 (1618)
Q Consensus 103 LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~ 182 (1618)
|||||+++++++|+++||+||+||+|+|++||||||+|||.+|++++++ .
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~-----~------------------------- 50 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARG-----D------------------------- 50 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhcc-----c-------------------------
Confidence 7999999999999999999999999999999999999999999875321 0
Q ss_pred ccCcchHHHHHhhhhHHHHHHHHhc-CCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceeecCCChhhhHHH
Q psy5309 183 SKGKKSKAVAKAGSAKYQWQIMQSL-GLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFV 261 (1618)
Q Consensus 183 ~~g~~~~~~ak~~~~~~~~~~~~~~-g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v 261 (1618)
+.+.+.++++ |++.+++++|++|++|+++|.+.++++|++||+++||+|+|.|+| |.|+++|
T Consensus 51 ---------------~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~d--p~y~~~v 113 (897)
T PRK12300 51 ---------------PETIELYKSLYGIPEEELEKFKDPEYIVEYFSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFI 113 (897)
T ss_pred ---------------hhHHHHHHHHcCCCHHHHHHhcCHHHHHHHhHHHHHHHHHHhCcEEeCCCCeECCC--hhHHHHH
Confidence 0112344444 999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCCcEEEEeecCccc
Q psy5309 262 RWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPET 341 (1618)
Q Consensus 262 ~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeT 341 (1618)
+|+|.+|+++|+||+|.+||+|||.|+|+|||||+++++.++|++|+.++|+ . +++.+|+||||||||
T Consensus 114 ~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~~ikf~-~-----------~~~~~l~~~TtrPeT 181 (897)
T PRK12300 114 EWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYTLIKFE-E-----------SEDLILPAATLRPET 181 (897)
T ss_pred HHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEEEEEEe-C-----------CCceEEEEEECCcch
Confidence 9999999999999999999999999999999999999988899999999985 1 235689999999999
Q ss_pred cccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCch
Q psy5309 342 MYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTE 421 (1618)
Q Consensus 342 l~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~ 421 (1618)
||||+||||||++.|+.+.. + ++.+| ++++++.++.|++
T Consensus 182 l~g~tai~V~P~~~Y~~~~~-~-~e~~i------------------------------------~a~~~~~~~~~~~--- 220 (897)
T PRK12300 182 IFGVTNLWVNPDATYVKAEV-D-GEKWI------------------------------------VSKEAAEKLSFQD--- 220 (897)
T ss_pred hccceEEEECCCCcEEEEEE-C-CEEEE------------------------------------EeHHHHHHHhcCc---
Confidence 99999999999999999853 2 23334 4444444444542
Q ss_pred hhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccC
Q psy5309 422 VEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGL 501 (1618)
Q Consensus 422 ~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~W 501 (1618)
...+++.+++|..+. |..+.++++
T Consensus 221 --~~~~~~~~~~G~~l~--G~~~~~Pl~---------------------------------------------------- 244 (897)
T PRK12300 221 --RDVEIIEEIKGSELI--GKKVKNPVT---------------------------------------------------- 244 (897)
T ss_pred --CCceEEEEeehHHhc--CCEEECCCC----------------------------------------------------
Confidence 134556777777777 777766554
Q ss_pred CccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHH
Q psy5309 502 GTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIM 581 (1618)
Q Consensus 502 G~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~ 581 (1618)
|..+| ++++ ++|+++.|||+| |+ +|+|+
T Consensus 245 ~~~ip--------------------il~~--------------~~V~~~~GTGvV------~~--------~Pah~---- 272 (897)
T PRK12300 245 GKEVP--------------------ILPA--------------DFVDPDNGTGVV------MS--------VPAHA---- 272 (897)
T ss_pred CCeEE--------------------Eecc--------------CeeecCCCeeeE------Ee--------CCCCC----
Confidence 11134 6665 899999999999 99 99999
Q ss_pred HhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccc
Q psy5309 582 RREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPI 661 (1618)
Q Consensus 582 ~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1618)
|+||.++.++..+... + |+ ++++|+
T Consensus 273 --------~~Dy~~~~~~~~~~~~---~------------------------------~~--------------l~~i~i 297 (897)
T PRK12300 273 --------PYDYVALRDLKKNKEL---L------------------------------DV--------------IEPIPL 297 (897)
T ss_pred --------HHHHHHHHHhcccccc---c------------------------------cc--------------cCCcce
Confidence 9999998874321100 0 11 357789
Q ss_pred cccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHHHHHHHHHhCCcccCCC
Q psy5309 662 IQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKLLQKKIDIIGVALKAPV 739 (1618)
Q Consensus 662 i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~ 739 (1618)
|++|+||+++|+.+|++++|.||+|++ |++||+.+|++||++|+|+ +|+|+|++|+|||++|+++|++.|++
T Consensus 298 i~v~~~g~~~a~~~~~~~~~~~~~d~~-l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~----- 371 (897)
T PRK12300 298 IEVEGYGEFPAKEVVEKLGIKSQEDPE-LEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIA----- 371 (897)
T ss_pred EecCCcCcccHHHHHHHhCCCCccchh-HHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCe-----
Confidence 999999999999999999999999988 9999999999999999998 59999999999999999999999964
Q ss_pred cccceeeec-ccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-ccCcceeecCCchHHHHH
Q psy5309 740 TSHSVIYTL-PMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-LCDQWYLDYGEPTWKAAA 817 (1618)
Q Consensus 740 ~~~~~~~~~-~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-~~~QWfi~~~~~~~k~~~ 817 (1618)
..+++ ++.. +||||| ..|..+ +++||||++++++||+++
T Consensus 372 ----~~~~~~~~~~------------~~~R~~-----------------------~~~i~~~~~~QWFi~~~~~~~k~~~ 412 (897)
T PRK12300 372 ----DIMYEFSNRP------------VYCRCG-----------------------TECVVKVVKDQWFIDYSDPEWKELA 412 (897)
T ss_pred ----EEEEecCCCC------------cCcCCC-----------------------CEEEEEecCCceEEEcCcHHHHHHH
Confidence 22222 3333 788999 667665 589999999888999999
Q ss_pred HHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccC
Q psy5309 818 EQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNAL 897 (1618)
Q Consensus 818 ~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l 897 (1618)
++++++|+|+|++++++|.+||+|++||||||||+||||||+|+.|+|++|+|+++|||++++++++++ .
T Consensus 413 ~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~----------~ 482 (897)
T PRK12300 413 HKALDNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIRE----------Y 482 (897)
T ss_pred HHHHccCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHHHHHH----------c
Confidence 999999999999999999999999999999999999999999999999999999999999999999973 2
Q ss_pred CCCcCCCCCcceeEEecccCC---CCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCC
Q psy5309 898 NIKAEDLTPEVWDYVFFKAAP---FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEM 974 (1618)
Q Consensus 898 ~~~~~~l~~~~~d~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~ 974 (1618)
+++++++.++++||||.+... .+...+.|...+.+++++|++|||+|++++|+||+++|+.|++|.|+++|
T Consensus 483 g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~------ 556 (897)
T PRK12300 483 GIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIF------ 556 (897)
T ss_pred CCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhc------
Confidence 356778899999999987642 22234467777777788999999999999999999999988766555543
Q ss_pred CCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccC
Q psy5309 975 WPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEG 1054 (1618)
Q Consensus 975 wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~G 1054 (1618)
|.
T Consensus 557 ---------------------------------------------------~~--------------------------- 558 (897)
T PRK12300 557 ---------------------------------------------------PE--------------------------- 558 (897)
T ss_pred ---------------------------------------------------CC---------------------------
Confidence 10
Q ss_pred cccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHH
Q psy5309 1055 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMN 1134 (1618)
Q Consensus 1055 NvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~ 1134 (1618)
T Consensus 559 -------------------------------------------------------------------------------- 558 (897)
T PRK12300 559 -------------------------------------------------------------------------------- 558 (897)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccc
Q psy5309 1135 LKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQ 1214 (1618)
Q Consensus 1135 ~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~s 1214 (1618)
T Consensus 559 -------------------------------------------------------------------------------- 558 (897)
T PRK12300 559 -------------------------------------------------------------------------------- 558 (897)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHH
Q psy5309 1215 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESM 1294 (1618)
Q Consensus 1215 vh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~ 1294 (1618)
.++|+.+++|||++++|+|||||+||+|+|.+++++||||++||||+++++.++|++||++.
T Consensus 559 ------------------~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~ 620 (897)
T PRK12300 559 ------------------EKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKE 620 (897)
T ss_pred ------------------CccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHH
Confidence 02357888899999999999999999999999999999999999999998999999999998
Q ss_pred HHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHH
Q psy5309 1295 ADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIK 1374 (1618)
Q Consensus 1295 l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~ 1374 (1618)
+.+..+.++. ++++.+++ .+.. . ...+...|+|++++++++++
T Consensus 621 v~~~~~~l~r------------------------------~~~~~~~~---~~~~-~---~~~~~~~D~wils~l~~~i~ 663 (897)
T PRK12300 621 VESVRRQLER------------------------------FYELAKEL---IEIG-G---EEELRFIDKWLLSRLNRIIK 663 (897)
T ss_pred HHHHHHHHHH------------------------------HHHHHHHH---hcCC-C---ccccCHhHHHHHHHHHHHHH
Confidence 8776555542 22222221 1111 0 11345679999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhh
Q psy5309 1375 ETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYT 1454 (1618)
Q Consensus 1375 ~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~ 1454 (1618)
+++++|++|+|+.|++++++.+.+..|+|++.+++
T Consensus 664 ~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k~--------------------------------------------- 698 (897)
T PRK12300 664 ETTEAMESFQTRDAVQEAFYELLNDLRWYLRRVGE--------------------------------------------- 698 (897)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcch---------------------------------------------
Confidence 99999999999999999865666778899876541
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCCceEeccCCCCCC-
Q psy5309 1455 KMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGP- 1533 (1618)
Q Consensus 1455 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~sv~~~~~p~~~~- 1533 (1618)
.+++++.+++..+++|||||+||+|||+|+.|+.++||+.+.||++++
T Consensus 699 -------------------------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~~sv~~~~wP~~~~~ 747 (897)
T PRK12300 699 -------------------------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGEGFVSLEKWPEPDES 747 (897)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCCeEEeCCCCCCCcc
Confidence 245678899999999999999999999999998888999999999874
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCCCcccccCCceEEEEEcccCChhHHHHHHHHHHHHh
Q psy5309 1534 -IDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQSIVLTTMKQMME 1609 (1618)
Q Consensus 1534 -~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 1609 (1618)
+|+.++++++.+++++..+|+.+++. | + ++.+++|+++ ++|+.++++++.+.+.
T Consensus 748 ~~d~~~~~~~~~~~~~i~~ir~~~~~~-------~-~-----------~~~~~~i~~~---~~~~~~~~~~~~~~~n 802 (897)
T PRK12300 748 KIDEEAELAEEYVKRLIEDIREILKVA-------K-I-----------KPKKVYIYVA---PDWKYEVLEIAAENGD 802 (897)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHc-------C-C-----------CCceEEEEEC---CHHHHHHHHHHHHhhc
Confidence 58999999999999999999988531 1 0 2357888888 7899998888877553
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-123 Score=1224.95 Aligned_cols=803 Identities=17% Similarity=0.204 Sum_probs=596.3
Q ss_pred ccccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhcccccc
Q psy5309 4 KGTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVR 83 (1618)
Q Consensus 4 ~~~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1618)
..|.|+.++.++|++||++|+++++|++..+.+
T Consensus 18 t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~----------------------------------------------- 50 (961)
T PRK13804 18 TAFPMRAGLPQKEPEIQARWEEIDLYKKLREQA----------------------------------------------- 50 (961)
T ss_pred CCCCCCCChHHhHHHHHHHHHHCCCcccccccc-----------------------------------------------
Confidence 457788899999999999999999999876431
Q ss_pred CCCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCC
Q psy5309 84 SSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPS 163 (1618)
Q Consensus 84 ~~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e 163 (1618)
.++++|++++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||..+++..+ ..|.
T Consensus 51 -~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~---~~~~------ 120 (961)
T PRK13804 51 -KGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYR---AKGK------ 120 (961)
T ss_pred -CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhh---hcCC------
Confidence 246889999999999999999999999999999999999999999999999999999998876311 1111
Q ss_pred CCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc
Q psy5309 164 EDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD 243 (1618)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D 243 (1618)
+++ ..+.+++++.| ++|+.++++.|+++|++||+++|
T Consensus 121 -----------------------~~~------------------~~~~~~f~~~c--~~~a~~~i~~~~~~~~rlG~~~D 157 (961)
T PRK13804 121 -----------------------NKD------------------EVPVAEFRKEC--REYALSWIDVQREEFKRLGVLGD 157 (961)
T ss_pred -----------------------ChH------------------hCCHHHHHHHH--HHHHHHHHHHHHHHHHHhCceec
Confidence 111 12345555554 78999999999999999999999
Q ss_pred ccCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccc
Q psy5309 244 WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLC 323 (1618)
Q Consensus 244 w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~ 323 (1618)
|+++|.|+| |.|+++++|+|.+|+++|+||+|.+||+|||.|+|+|||+||+|.+..+++.|+.|+ +.++ ...
T Consensus 158 w~~~y~T~d--~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~--~~~~-~~~-- 230 (961)
T PRK13804 158 WDNPYTTMD--FHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFP--VKDG-KGI-- 230 (961)
T ss_pred CCCCcCcCC--HHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEE--ecCc-ccc--
Confidence 999999999 889999999999999999999999999999999999999999999999998876544 4221 000
Q ss_pred cCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCC---------ccEEEEecccccCccCCCeeEEecCCCCee
Q psy5309 324 CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDS---------KPVFLVAATLRPETMYGQTNAWVRPDMAYI 394 (1618)
Q Consensus 324 ~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~---------~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~ 394 (1618)
+ .++.+++||||||||||||+||||||++.|+.++. .+ ++.+||+..
T Consensus 231 -~-~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~-~~~~~~~~~~~~e~~iva~~--------------------- 286 (961)
T PRK13804 231 -L-DSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEV-TGAENDFWAKPGERLVVADA--------------------- 286 (961)
T ss_pred -c-CCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEe-ccccccccccCCcEEEeHHH---------------------
Confidence 1 12468999999999999999999999999999864 22 123344332
Q ss_pred EEEcCCCcEEEeccccccccccC-CCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhcccc
Q psy5309 395 AFTTATGEVFVCTERSARNMAYQ-GFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMN 473 (1618)
Q Consensus 395 ~~~~~~~~~~i~~~~~~~~~~~~-g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~ 473 (1618)
.+.++..+ |+ ...+++.+++|..+. |..+.+++..+=
T Consensus 287 ---------------~~~~~~~~~~~----~~~~~~~~~~g~~L~--g~~~~~P~~~~~--------------------- 324 (961)
T PRK13804 287 ---------------LAESVAKKAGV----ESFERLADVKGEDLE--KIVCAHPLDGLD--------------------- 324 (961)
T ss_pred ---------------HHHHHHHHhCC----CCcEEEEEEEhhhcc--CCEEECCCCCcc---------------------
Confidence 22111100 11 023455667777776 666665554100
Q ss_pred ccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCC
Q psy5309 474 TYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLT 553 (1618)
Q Consensus 474 ~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gt 553 (1618)
+. ...+| ++++ ++|+++.||
T Consensus 325 --~~------------------------~~~~p--------------------vi~~--------------~~V~~~~GT 344 (961)
T PRK13804 325 --GY------------------------EFEVP--------------------VLDG--------------DHVTDDAGT 344 (961)
T ss_pred --cc------------------------cceeE--------------------EEec--------------CccCCCCCC
Confidence 00 00144 5554 799999999
Q ss_pred cceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCC
Q psy5309 554 PEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGG 633 (1618)
Q Consensus 554 g~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1618)
|+| |+ +|+|+ ++||.++.+ |
T Consensus 345 G~V------h~--------aPahg------------~~Dy~~~~~----------~------------------------ 364 (961)
T PRK13804 345 GFV------HT--------APGHG------------REDFNVWMK----------Y------------------------ 364 (961)
T ss_pred ceE------Ee--------CCCCC------------HHHHHHHHH----------c------------------------
Confidence 999 99 99999 999998876 4
Q ss_pred ccccCCCC-cccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeeccc
Q psy5309 634 TFRGENGN-ALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712 (1618)
Q Consensus 634 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~ 712 (1618)
|+ +. +..+++.|.+... . +-+.| ++++.|
T Consensus 365 ------~l~~~-----------------~~~vd~~G~~~~~------------~--------------~~~~g-~~v~~~ 394 (961)
T PRK13804 365 ------GRTEI-----------------PVTVDEDGFYTEN------------A--------------PGFGG-ARVIDD 394 (961)
T ss_pred ------CCCcc-----------------cccCCCCeEEccC------------C--------------Ccccc-cccccc
Confidence 33 21 0112333332110 0 00011 123349
Q ss_pred CCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCccccccc
Q psy5309 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVT 792 (1618)
Q Consensus 713 ~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~ 792 (1618)
+|+.+++||++|+++|++.|+| ++.++|+|+
T Consensus 395 ~G~~~~ea~~~Ii~~L~~~g~l-------------------------------------------------~~~~~~~h~ 425 (961)
T PRK13804 395 EGKKYGDANKAVIEKLIEAGLL-------------------------------------------------LARGRLKHS 425 (961)
T ss_pred CCcchhhhhHHHHHHHHhCCCc-------------------------------------------------ccccceecC
Confidence 9999999999999999999975 567899999
Q ss_pred CCeEEEe-------ccCcceeecCCc-----hHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCC
Q psy5309 793 DEMCVVA-------LCDQWYLDYGEP-----TWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWD 860 (1618)
Q Consensus 793 y~~c~~~-------~~~QWfi~~~~~-----~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d 860 (1618)
||||||+ +++||||++.+. +||+++++++++|+|+|+++++++.+||++++||||||||+||||||+
T Consensus 426 yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~- 504 (961)
T PRK13804 426 YPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPI- 504 (961)
T ss_pred CCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeE-
Confidence 9999997 799999999531 399999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcceEeehhHHHHHhhcCccCCCCCc-------cCC-----CCcCCCCCcceeEEecccCCCCCCCCCChh
Q psy5309 861 EQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGN-------ALN-----IKAEDLTPEVWDYVFFKAAPFPPKCRVPKA 928 (1618)
Q Consensus 861 ~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~-------~l~-----~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~ 928 (1618)
|||++ +..++...++.++.+.....|.+.. .+. ...-...+|++|+||+||..+.. ..
T Consensus 505 --~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~--~~--- 574 (961)
T PRK13804 505 --FVAED---GEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAF--VL--- 574 (961)
T ss_pred --EEcCC---CCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccc--cc---
Confidence 99963 3444544555554321111232210 010 01123456888888888865431 00
Q ss_pred hHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccc
Q psy5309 929 KLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSD 1008 (1618)
Q Consensus 929 ~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~ 1008 (1618)
..++.+ +||+|+|++|+||+|+ |||+++
T Consensus 575 ---~~~~~~--~~PaD~~~eG~Di~rg------WF~s~l----------------------------------------- 602 (961)
T PRK13804 575 ---EDRPDL--KWPADLYLEGSDQHRG------WFNSSL----------------------------------------- 602 (961)
T ss_pred ---cCCccc--CCCceEEEEEcccccH------HHHHHH-----------------------------------------
Confidence 011222 4788888888888777 222211
Q ss_pred cccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCccccccccc
Q psy5309 1009 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFV 1088 (1618)
Q Consensus 1009 ~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs 1088 (1618)
T Consensus 603 -------------------------------------------------------------------------------- 602 (961)
T PRK13804 603 -------------------------------------------------------------------------------- 602 (961)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy5309 1089 ESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYR 1168 (1618)
Q Consensus 1089 ~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi 1168 (1618)
T Consensus 603 -------------------------------------------------------------------------------- 602 (961)
T PRK13804 603 -------------------------------------------------------------------------------- 602 (961)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-
Q psy5309 1169 ELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL- 1247 (1618)
Q Consensus 1169 ~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld- 1247 (1618)
+.+....+.+||+.|++|||++|
T Consensus 603 --------------------------------------------------------l~s~~~~~~~P~k~V~~HG~vld~ 626 (961)
T PRK13804 603 --------------------------------------------------------LESCGTRGRAPYKAVLTHGFTLDE 626 (961)
T ss_pred --------------------------------------------------------HHHHHhcCCCChhhEEEeccEECC
Confidence 00000012357899999999999
Q ss_pred cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccC-CCCcchhhHHHH
Q psy5309 1248 NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVEDANFVES 1326 (1618)
Q Consensus 1248 ~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~-gnl~~~~~r~~~ 1326 (1618)
+|+|||||+||||+|.++|++||||+||||++++ ++++|++||++.+++..+.+|+ ++|++..+ ||+
T Consensus 627 ~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~-~~~~D~~fs~~~l~~~~~~~~k--L~N~~rf~l~nl--------- 694 (961)
T PRK13804 627 KGEKMSKSLGNTVSPQDVIKQSGADILRLWVASV-DYSDDQRIGKEILKQVSETYRK--LRNTLRWLLGNL--------- 694 (961)
T ss_pred CCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhC-CCCCCcccCHHHHHHHHHHHHH--HHHHHHHHHhcc---------
Confidence 9999999999999999999999999999999975 8899999999999887777774 33332221 222
Q ss_pred HhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHH
Q psy5309 1327 MADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYR 1404 (1618)
Q Consensus 1327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~ 1404 (1618)
..|++....++...+..+|+|++++++++++++.++|++|+|++|+++++ +|+ .++|+|+
T Consensus 695 -----------------~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~-~f~~~~lsn~Yl 756 (961)
T PRK13804 695 -----------------AHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALV-NFVNVDLSAFYF 756 (961)
T ss_pred -----------------ccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHH
Confidence 11111111111234566899999999999999999999999999999985 998 4899999
Q ss_pred HhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhh
Q psy5309 1405 ELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG 1484 (1618)
Q Consensus 1405 ~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 1484 (1618)
+..+ +|+|++..+...++
T Consensus 757 e~~K-------------------------------------------------------~rl~~~~~~~~~r~------- 774 (961)
T PRK13804 757 DIRK-------------------------------------------------------DALYCDAPSSLRRR------- 774 (961)
T ss_pred HHhh-------------------------------------------------------HhhhcCCCCcHHHH-------
Confidence 7766 33333221111111
Q ss_pred chHHHHHHHHHHHHHHHhccchhhHHHHHHHHcC--CCCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1485 GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG--KKGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKNHI 1560 (1618)
Q Consensus 1485 ~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~--~~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~~~ 1560 (1618)
..+++|+.+|+.+++|||||+||+|||+|+.|+ +.+||+.+.||+.++ .|+.+++.++.+++ +|+.+++++
T Consensus 775 -~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~----~r~~v~~~l 849 (961)
T PRK13804 775 -AAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETPAFWRDDALAEKWRKFRA----VRDVVTGAL 849 (961)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccCCCCceEecCCCCCcchhCCHHHHHHHHHHHH----HHHHHHHHH
Confidence 467889999999999999999999999999998 357999999999763 37778777666666 999999999
Q ss_pred HHhhcccCCccCCC
Q psy5309 1561 LTASKKKGKKVGGG 1574 (1618)
Q Consensus 1561 e~~r~~k~~~~~~~ 1574 (1618)
+.+|+++.++.+++
T Consensus 850 e~~R~~~~i~~~~e 863 (961)
T PRK13804 850 EEERAAKRIGSSLE 863 (961)
T ss_pred HHHHHhCCCCCCcc
Confidence 99999996665544
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-123 Score=1225.44 Aligned_cols=811 Identities=18% Similarity=0.255 Sum_probs=616.4
Q ss_pred ccccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhcccccc
Q psy5309 4 KGTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVR 83 (1618)
Q Consensus 4 ~~~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1618)
..|.|+.+++++|++||++|+++++|++..+.+
T Consensus 13 t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~----------------------------------------------- 45 (912)
T PRK05743 13 TDFPMRANLPKREPEILKRWEENDLYQKIREAN----------------------------------------------- 45 (912)
T ss_pred CCCCCCCChHHhhHHHHHHHHHCCCccccchhc-----------------------------------------------
Confidence 456788999999999999999999998765431
Q ss_pred CCCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCC
Q psy5309 84 SSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPS 163 (1618)
Q Consensus 84 ~~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e 163 (1618)
.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||..|++. +|+.
T Consensus 46 -~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~------l~~~----- 113 (912)
T PRK05743 46 -KGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKK------LGKK----- 113 (912)
T ss_pred -CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHH------cCCc-----
Confidence 2468899999999999999999999999999999999999999999999999999999999872 1211
Q ss_pred CCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc
Q psy5309 164 EDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD 243 (1618)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D 243 (1618)
..+++.+++++.| ++|++++++.|+++|++||+++|
T Consensus 114 ------------------------------------------~~~~~~~~f~~~c--~~~~~~~~~~~~~~~~~lG~~~d 149 (912)
T PRK05743 114 ------------------------------------------GKKLSAAEFRKKC--REYALEQVDIQREDFKRLGVLGD 149 (912)
T ss_pred ------------------------------------------cccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhCCccc
Confidence 0144567777776 79999999999999999999999
Q ss_pred ccCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccc
Q psy5309 244 WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLC 323 (1618)
Q Consensus 244 w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~ 323 (1618)
|+++|.|+| |.|+++++|+|.+|+++|+||+|.+||+|||.|+|+|||+||+|+++.+++.|+.|+ +.++ ... .
T Consensus 150 w~~~~~T~~--~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~--l~~~-~~~-~ 223 (912)
T PRK05743 150 WDNPYLTMD--FKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFP--VVDG-KLA-A 223 (912)
T ss_pred CCCCcCCCC--HHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEE--ecCc-chh-c
Confidence 999999999 889999999999999999999999999999999999999999999999999885554 4321 100 0
Q ss_pred cCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcE
Q psy5309 324 CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEV 403 (1618)
Q Consensus 324 ~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~ 403 (1618)
.+ ++.+|+||||||||||||+||||||++.|+.++. .+ +.+|++..+......
T Consensus 224 ~~--~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~-~~-~~~i~a~~~~~~~~~----------------------- 276 (912)
T PRK05743 224 AF--KDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEV-EG-EKLIVAKDLVESVLE----------------------- 276 (912)
T ss_pred cc--CCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEc-CC-CEEEEeHHhHHHHHH-----------------------
Confidence 01 2469999999999999999999999999999865 22 356666543221000
Q ss_pred EEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhH
Q psy5309 404 FVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNF 483 (1618)
Q Consensus 404 ~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~ 483 (1618)
-.|+ .+.+++.+++|..+. |..+.+++.
T Consensus 277 ------------~~~~----~~~~~~~~~~G~~l~--g~~~~~Pl~---------------------------------- 304 (912)
T PRK05743 277 ------------RFGW----EDYEVLATFKGKELE--GLVAQHPFY---------------------------------- 304 (912)
T ss_pred ------------hhCC----cceEEEEEechHhhc--CCEEECCCC----------------------------------
Confidence 0011 123344556666665 666555443
Q ss_pred hhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeecc
Q psy5309 484 GASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFK 563 (1618)
Q Consensus 484 ~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~ 563 (1618)
|..+| ++++ ++|+++.|||+| |
T Consensus 305 ------------------~~~~p--------------------vi~~--------------~~V~~~~GTG~V------h 326 (912)
T PRK05743 305 ------------------DRDSP--------------------VILG--------------DHVTLDAGTGLV------H 326 (912)
T ss_pred ------------------CCeee--------------------EeCC--------------CccCCCCCcCeE------E
Confidence 11245 5543 789999999999 9
Q ss_pred CCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcc
Q psy5309 564 SAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNAL 643 (1618)
Q Consensus 564 ~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1618)
+ +|+|+ ++||.++.+ | |++.
T Consensus 327 ~--------aPahg------------~~Dy~~~~~----------~------------------------------~L~~ 346 (912)
T PRK05743 327 T--------APGHG------------EDDYVVGQK----------Y------------------------------GLEV 346 (912)
T ss_pred e--------CCCCC------------HHHHHHHHH----------c------------------------------CCCc
Confidence 9 99999 999988765 4 4321
Q ss_pred cccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHH
Q psy5309 644 NINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVK 721 (1618)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~ 721 (1618)
+.+| | .+|+|+ +|+|+|+++++||
T Consensus 347 ---------------~~~v-----------------------d----------------~~G~~~~~~~~~~Gl~v~ea~ 372 (912)
T PRK05743 347 ---------------LNPV-----------------------D----------------DDGRYTEEAPLFAGLFVFKAN 372 (912)
T ss_pred ---------------cccc-----------------------C----------------CCceEecCCcccCCcCHHHhH
Confidence 1111 1 157776 5899999999999
Q ss_pred HHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe--
Q psy5309 722 KLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-- 799 (1618)
Q Consensus 722 ~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-- 799 (1618)
++|++.|++.|++ ++.++|.|+||||||+
T Consensus 373 ~~Ii~~L~~~g~l-------------------------------------------------~~~~~~~h~yp~~wR~~~ 403 (912)
T PRK05743 373 PKIIEKLEEKGAL-------------------------------------------------LKEEKITHSYPHCWRTKK 403 (912)
T ss_pred HHHHHHHHhCCCe-------------------------------------------------eeeeeeeccCCeecCCCC
Confidence 9999999999965 5678899999999997
Q ss_pred -----ccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceE
Q psy5309 800 -----LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 800 -----~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
+++||||+++++.||+++++++++|+|+|+++++++.+||++++||||||||+||||||+ |+|++|+ .+.
T Consensus 404 pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~---~~~~~~g--~~~ 478 (912)
T PRK05743 404 PVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPI---FYHKETG--ELH 478 (912)
T ss_pred EEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEE---EEECCCC--cEe
Confidence 799999999655699999999999999999999999999999999999999999999999 9998653 333
Q ss_pred eeh---hHHHHHhhcCccCCCCCc------c-CC--CCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccc
Q psy5309 875 MAY---YTVAHLLQGGTFRGENGN------A-LN--IKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYP 942 (1618)
Q Consensus 875 ~~~---~ti~~~l~~~~~~g~~~~------~-l~--~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p 942 (1618)
+.- +++++++++ .|.+.. . ++ .......+|++|.||+||..+..... .+. +.|||
T Consensus 479 ~~~~~~~~i~~~~~~---~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~--------~~~--~~~~P 545 (912)
T PRK05743 479 PTPELIEHVAKLFEK---EGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLE--------QRP--ELGYP 545 (912)
T ss_pred ecHHHHHHHHHHHHh---hCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhc--------Ccc--ccCCC
Confidence 332 334444532 122211 0 01 01123357889999998864431110 111 36899
Q ss_pred cceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhh
Q psy5309 943 VDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHT 1022 (1618)
Q Consensus 943 ~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~ 1022 (1618)
+|+|++|+||+|| |||+.+|
T Consensus 546 ~Dl~~~G~Di~r~------Wf~~~l~------------------------------------------------------ 565 (912)
T PRK05743 546 ADLYLEGSDQHRG------WFQSSLL------------------------------------------------------ 565 (912)
T ss_pred ceEEEecccccch------HHHHHHH------------------------------------------------------
Confidence 9999999999988 3343332
Q ss_pred hccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHH
Q psy5309 1023 AIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTF 1102 (1618)
Q Consensus 1023 ~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~ 1102 (1618)
+ +
T Consensus 566 ---~---------------------------------------------------~------------------------ 567 (912)
T PRK05743 566 ---T---------------------------------------------------S------------------------ 567 (912)
T ss_pred ---H---------------------------------------------------H------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHH
Q psy5309 1103 IEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLV 1182 (1618)
Q Consensus 1103 ~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l 1182 (1618)
T Consensus 568 -------------------------------------------------------------------------------- 567 (912)
T PRK05743 568 -------------------------------------------------------------------------------- 567 (912)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCC
Q psy5309 1183 LRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLT 1261 (1618)
Q Consensus 1183 ~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~ 1261 (1618)
.++ .+..||+.|++||||+| +|+|||||+||||+
T Consensus 568 ----------------------------------------~~~-----~g~~P~k~vl~HG~vld~~G~KMSKSlGNvId 602 (912)
T PRK05743 568 ----------------------------------------VAT-----RGKAPYKQVLTHGFTVDGKGRKMSKSLGNVID 602 (912)
T ss_pred ----------------------------------------HHh-----cCCCccceeEEeeeEECCCCCCCCCCCCCcCC
Confidence 000 02356899999999999 99999999999999
Q ss_pred HHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhh--hhhhcccCCCCcchhhHHHHHhhhhhhhhhhHH
Q psy5309 1262 LTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADG--MRLCLADSGDSVEDANFVESMADAGILRLYTFI 1339 (1618)
Q Consensus 1262 P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~--~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~ 1339 (1618)
|.++|++||||+||||+++ +++++|++||++.+++..+.+|+.+ +|+.++|+.++
T Consensus 603 P~~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~---------------------- 659 (912)
T PRK05743 603 PQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDF---------------------- 659 (912)
T ss_pred HHHHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCC----------------------
Confidence 9999999999999999998 5889999999999988767776432 22223222111
Q ss_pred HHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHH
Q psy5309 1340 EWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTL 1417 (1618)
Q Consensus 1340 ~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~ 1417 (1618)
++.....+...+..+|+|+++++++++++++++|++|+|++|+++++ +|+ .++|+|++.++
T Consensus 660 -------~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~-~f~~~~ls~~Yie~~K--------- 722 (912)
T PRK05743 660 -------DPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLH-NFCSVDLSAFYLDIIK--------- 722 (912)
T ss_pred -------CcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHhhhhhceeeheecc---------
Confidence 11000111234567899999999999999999999999999999985 998 48888886655
Q ss_pred HHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHH
Q psy5309 1418 VLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEV 1497 (1618)
Q Consensus 1418 ~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 1497 (1618)
+|+|+...+...++ ..+++|+.+|+.
T Consensus 723 ----------------------------------------------~rly~~~~~~~~r~--------~~~~vL~~~l~~ 748 (912)
T PRK05743 723 ----------------------------------------------DRLYTDAADSLARR--------SAQTALYHILEA 748 (912)
T ss_pred ----------------------------------------------HhhhcCCCCcHHHH--------HHHHHHHHHHHH
Confidence 44444321111111 467789999999
Q ss_pred HHHHhccchhhHHHHHHHHcC--CCCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCC
Q psy5309 1498 QALLLCPVCPHVAEHVYQLLG--KKGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGG 1573 (1618)
Q Consensus 1498 ~~~llaPi~P~~aEeiw~~l~--~~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~ 1573 (1618)
+++|||||+||+|||+|+.|+ +++||+.+.||+.+. .|+.+++.++.+++ +|+.++++++.+|++|.++.++
T Consensus 749 l~~lLaPi~P~~aEelw~~l~~~~~~sv~~~~wP~~~~~~~~~~~~~~~~~~~~----~r~~v~~~i~~~r~~~~i~~~~ 824 (912)
T PRK05743 749 LVRWLAPILSFTAEEIWQYLPGEREESVFLEEWPEVPELADDEELLAKWEELLE----VRDEVNKALEEARKEKVIGSSL 824 (912)
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCCCceEEecCCCCccccCCHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCCccc
Confidence 999999999999999999994 567999999998764 47777777666655 9999999999999998665543
Q ss_pred CCcccccCCceEEEEEcccCChhHHHHHHHHHHHHhccCC
Q psy5309 1574 GGVGLVEKPTHATVWVAKTFPPWQSIVLTTMKQMMEVREP 1613 (1618)
Q Consensus 1574 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 1613 (1618)
++ .+.|++.. +......+.|..++.+|+-
T Consensus 825 ~~--------~~~~~~~~---~~l~~~~~~l~~~~~vs~v 853 (912)
T PRK05743 825 EA--------EVTLYADA---ALLESLGDELRFLLIVSQV 853 (912)
T ss_pred ce--------EEEEEcCH---HHHHHHHHHHHHHhhhCce
Confidence 32 33333321 4555555667777766543
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-123 Score=1224.55 Aligned_cols=806 Identities=19% Similarity=0.213 Sum_probs=595.7
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|+++|+++|++||++|+++++|++..+.+ .+
T Consensus 1 m~~~~~~~E~~~~~~W~~~~~y~~~~~~~-------------------------------------------------~~ 31 (974)
T PLN02843 1 MRANSVTREPEIQKLWEENQVYKRVSDRN-------------------------------------------------NG 31 (974)
T ss_pred CCCChHHhhHHHHHHHHHCCCcccccccc-------------------------------------------------CC
Confidence 57899999999999999999999866431 24
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|++++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||..+++.. +..
T Consensus 32 ~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l------~~~--------- 96 (974)
T PLN02843 32 ESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSL------DQE--------- 96 (974)
T ss_pred CCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHh------chh---------
Confidence 66999999999999999999999999999999999999999999999999999999877521 100
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+..+.+.+++++.| ++|++++++.|+++|++||+++||+++
T Consensus 97 -------------------------------------~~~~~~~~~f~~~c--~~~~~~~~~~~~~~~~~lG~~~Dw~~~ 137 (974)
T PLN02843 97 -------------------------------------ARKELTPIKLRAKA--AKFAKKTVDTQRESFKRYGVWGDWENP 137 (974)
T ss_pred -------------------------------------hhccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhCCceecCCC
Confidence 01134556666665 699999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCC-CCCCeeEEEEEEeeccCCccccccCC
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGE-GVGPQEYTLIKMRLVKPYPAKLCCLD 326 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~ 326 (1618)
|.|+| |.|+++++|+|.+|+++|+||+|.+||+|||+|+|+|||+|++|++ .++++.|+.|++.. +.+.......
T Consensus 138 y~T~d--~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~--~~~~~~~~~~ 213 (974)
T PLN02843 138 YLTLD--PEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVS--PSETSPEELE 213 (974)
T ss_pred CccCC--HHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecC--Cccccccccc
Confidence 99999 8899999999999999999999999999999999999999999997 57999987777642 1110000011
Q ss_pred C--CCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEc-CCCcE
Q psy5309 327 S--KPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTT-ATGEV 403 (1618)
Q Consensus 327 ~--~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~-~~~~~ 403 (1618)
. .+.+|+||||||||||||+||||||++.|+.++. ++..... +.+. ++. ++.+.+... ..++.
T Consensus 214 ~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~-~~~~~d~-----r~~~----~~~----~~~~~~~~~~~~~~~ 279 (974)
T PLN02843 214 EFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEV-QSFSEDE-----STSG----GNK----KKRPGNVLKEQQKLF 279 (974)
T ss_pred cccccceEEEEeCcchhhccCcEEEECCCCceEEEEe-ccccccc-----cccc----ccc----ccccccccccccCce
Confidence 1 1369999999999999999999999999999864 2211100 0000 000 000000000 01233
Q ss_pred EEecccccccc--ccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhh
Q psy5309 404 FVCTERSARNM--AYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRR 481 (1618)
Q Consensus 404 ~i~~~~~~~~~--~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~ 481 (1618)
+|+.+..+..+ .+ |. ..+++.+++|..+. |.++.+++.+
T Consensus 280 ~iva~~l~~~~~~~~-~~-----~~~~~~~~~g~~L~--g~~~~~P~~~------------------------------- 320 (974)
T PLN02843 280 LIVATDLVPALEAKW-GV-----KLVVLKTFPGSDLE--GCRYIHPLYN------------------------------- 320 (974)
T ss_pred EEeHHHHHHHHHHhh-CC-----ceEEEeeechHHcC--CCEEECCCCC-------------------------------
Confidence 44443322211 11 11 24556667777776 6555544431
Q ss_pred hHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeee
Q psy5309 482 NFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVF 561 (1618)
Q Consensus 482 ~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~ 561 (1618)
..+| +++++ +||+++.|||+|
T Consensus 321 ---------------------~~~p-------------------ii~~~--------------~~V~~~~GTG~V----- 341 (974)
T PLN02843 321 ---------------------RESP-------------------VVIGG--------------DYITTESGTGLV----- 341 (974)
T ss_pred ---------------------Ccee-------------------EEecC--------------CccCCCCCCCeE-----
Confidence 1133 12222 789999999999
Q ss_pred ccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCC
Q psy5309 562 FKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGN 641 (1618)
Q Consensus 562 ~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1618)
|+ +|+|| |+||.++.+ | |+
T Consensus 342 -h~--------aPaHg------------~~Dy~~~~~----------~------------------------------~l 360 (974)
T PLN02843 342 -HT--------APGHG------------QEDYITGLK----------Y------------------------------GL 360 (974)
T ss_pred -Ee--------CCCCC------------HHHHHHHHH----------c------------------------------CC
Confidence 99 99999 999998765 4 43
Q ss_pred cccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchH-
Q psy5309 642 ALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQ- 718 (1618)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~- 718 (1618)
+. +.+ ++ .+|+|+ +|+|+|+.|+
T Consensus 361 ~~---------------~~~--vd-------------------------------------~~G~~~~~~~~~~G~~v~~ 386 (974)
T PLN02843 361 PL---------------LSP--VD-------------------------------------DAGKFTEEAGQFSGLSVLG 386 (974)
T ss_pred Cc---------------ccc--cC-------------------------------------CCceEccCCcccCCcEehh
Confidence 21 111 12 257776 5889999998
Q ss_pred HHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEE
Q psy5309 719 EVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVV 798 (1618)
Q Consensus 719 ~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~ 798 (1618)
+||++|+++|++.|+| ++.+++.|+||||||
T Consensus 387 ~a~~~Ii~~L~~~g~l-------------------------------------------------~~~e~~~H~yp~cwR 417 (974)
T PLN02843 387 EGNAAVVEALDEAGSL-------------------------------------------------LMEEAYGHKYPYDWR 417 (974)
T ss_pred cchHHHHHHHHHCCCe-------------------------------------------------eeeeeecCCCCccCC
Confidence 8999999999999965 567889999999999
Q ss_pred e-------ccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCc
Q psy5309 799 A-------LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDS 871 (1618)
Q Consensus 799 ~-------~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~ 871 (1618)
+ +++||||++ ++||+++++++++|+|+|+++++++.+||++++||||||||+||||||+ |+|+.+ +
T Consensus 418 ~~~pvi~r~t~QWFi~~--~~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~---~~~~~~--~ 490 (974)
T PLN02843 418 TKKPTIFRATEQWFASV--EGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPV---FYHVET--K 490 (974)
T ss_pred CCCeEEEEecCceeEeC--HHHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEE---EEEcCC--C
Confidence 7 799999999 7999999999999999999999999999999999999999999999999 999765 4
Q ss_pred ceEeehhHHHHHhhcCccCCCCCc------c-CC------CCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhc
Q psy5309 872 TIYMAYYTVAHLLQGGTFRGENGN------A-LN------IKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQ 938 (1618)
Q Consensus 872 ~iy~~~~ti~~~l~~~~~~g~~~~------~-l~------~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1618)
++++..++++++.+.....|.+.. . +. ...-...+|++|+||+|+..+.. +.+.+ .+
T Consensus 491 ~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~--------~~~~~--~~ 560 (974)
T PLN02843 491 EPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAG--------VLGSR--EG 560 (974)
T ss_pred CEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHH--------Hhccc--cc
Confidence 688999988888642222333211 0 00 00112345778888888764431 11111 13
Q ss_pred cccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhh
Q psy5309 939 YWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFI 1018 (1618)
Q Consensus 939 ~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i 1018 (1618)
.+||+|++++|+||+||| ||..+|
T Consensus 561 ~~~PaDl~~eG~Di~rgW------f~s~l~-------------------------------------------------- 584 (974)
T PLN02843 561 LSYPADLYLEGSDQHRGW------FQSSLL-------------------------------------------------- 584 (974)
T ss_pred cCCCceeeeeeccccchH------HHHHHH--------------------------------------------------
Confidence 467888888888887772 222221
Q ss_pred hhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhh
Q psy5309 1019 YIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILR 1098 (1618)
Q Consensus 1019 ~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~k 1098 (1618)
T Consensus 585 -------------------------------------------------------------------------------- 584 (974)
T PLN02843 585 -------------------------------------------------------------------------------- 584 (974)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Q psy5309 1099 LYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMH 1178 (1618)
Q Consensus 1099 l~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~ 1178 (1618)
T Consensus 585 -------------------------------------------------------------------------------- 584 (974)
T PLN02843 585 -------------------------------------------------------------------------------- 584 (974)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccC
Q psy5309 1179 RTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEG 1257 (1618)
Q Consensus 1179 ~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlG 1257 (1618)
.+....+..||+.+++|||++| +|+|||||+|
T Consensus 585 -----------------------------------------------~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlG 617 (974)
T PLN02843 585 -----------------------------------------------TSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLG 617 (974)
T ss_pred -----------------------------------------------HHHHhcCCCccceEEEeccEECCCCCCcCCCCC
Confidence 0000013356899999999999 9999999999
Q ss_pred CcCCHHHHHH---------hcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccC-CCCcchhhHHHHH
Q psy5309 1258 NFLTLTEAVK---------KFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVEDANFVESM 1327 (1618)
Q Consensus 1258 NvI~P~~ii~---------~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~-gnl~~~~~r~~~~ 1327 (1618)
|||+|.++|+ +||||+||||++++ ++++|++||++.+++..+.+|+. ++.+..+ ||+.
T Consensus 618 NvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~-~~~~d~~~s~~~l~~~~~~~~kl--~n~~rf~lgnl~--------- 685 (974)
T PLN02843 618 NVVDPRLVIEGGKNQKQEPAYGADVLRLWVASV-DYTGDVLIGPQILKQMSDIYRKL--RGTLRYLLGNLH--------- 685 (974)
T ss_pred CcCCHHHHHhhccccccccccChHHHHHHHHhc-ccCCCceeCHHHHHHHHHHHHHH--HHHHHHHHhCcc---------
Confidence 9999999999 79999999999975 78899999999999888888743 3333222 3330
Q ss_pred hhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHH
Q psy5309 1328 ADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRE 1405 (1618)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~ 1405 (1618)
.+++.... +...+..+|+|++++++++++++.++|++|+|++|+++++ +|+ .++|+|++
T Consensus 686 -----------------~~~~~~~~-~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~-~f~~~dlsn~Yie 746 (974)
T PLN02843 686 -----------------DWKPDNAV-PYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQ-RFTIVDLSNFYLD 746 (974)
T ss_pred -----------------CCCccccc-CccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHhHHHHH
Confidence 01110001 1233456799999999999999999999999999999985 885 49999997
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhc
Q psy5309 1406 LTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGG 1485 (1618)
Q Consensus 1406 ~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 1485 (1618)
..| +|+|++..+...++
T Consensus 747 ~~K-------------------------------------------------------prly~~~~~~~~r~-------- 763 (974)
T PLN02843 747 VAK-------------------------------------------------------DRLYVGGTTSFTRR-------- 763 (974)
T ss_pred hcc-------------------------------------------------------hhhhccCCCHHHHH--------
Confidence 776 33333221111111
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCC------CCceEeccCCCCCCC--C--HHHHHHHHHHHHHHHHHHHH
Q psy5309 1486 MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK------KGSIVKARWPEGGPI--D--DILVRSSSYLMEAAHAFRLQ 1555 (1618)
Q Consensus 1486 ~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~------~~sv~~~~~p~~~~~--~--~~l~~~~~~~~~~i~~~R~~ 1555 (1618)
..|++|+.+++.+++||||||||+|||+|+.|+. .+||+++.||+.++. + ..+.+.++.+ .++|..
T Consensus 764 ~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~----~~~r~~ 839 (974)
T PLN02843 764 SCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLL----LEVRDE 839 (974)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchhhcCchHHHHHHHHHH----HHHHHH
Confidence 4778899999999999999999999999999863 469999999997632 3 3344444444 459999
Q ss_pred HHHHHHHhhcccCCccCCC
Q psy5309 1556 VKNHILTASKKKGKKVGGG 1574 (1618)
Q Consensus 1556 ~~~~~e~~r~~k~~~~~~~ 1574 (1618)
++++++.+|++|.++.+++
T Consensus 840 v~~~l~~~r~~~~i~~~~~ 858 (974)
T PLN02843 840 VNKVLESARNGKLIGASLE 858 (974)
T ss_pred HHHHHHHHHhcCCCCcccc
Confidence 9999999999996665544
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-121 Score=1212.66 Aligned_cols=810 Identities=17% Similarity=0.205 Sum_probs=603.2
Q ss_pred ccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCC
Q psy5309 6 TFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSS 85 (1618)
Q Consensus 6 ~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1618)
+-++..++++|++|+++|+++++|++..+.+ .
T Consensus 68 ~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~------------------------------------------------~ 99 (1205)
T PTZ00427 68 VSENPNIVEEEEKVLKYWKSIDAFNTSNKLA------------------------------------------------K 99 (1205)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccCcccc------------------------------------------------C
Confidence 3455678999999999999999999876531 2
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
+++.|++++||||+||.||||||++++++|+++||+||+||+|+|++||||||+|||..++|. +|+...
T Consensus 100 ~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~------lg~~~k----- 168 (1205)
T PTZ00427 100 NKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKE------NNINKK----- 168 (1205)
T ss_pred CCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHH------hCCCcc-----
Confidence 367799999999999999999999999999999999999999999999999999999998862 343310
Q ss_pred CCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccccc
Q psy5309 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWR 245 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~ 245 (1618)
++ ..++| .+++++. |++|+.++.+.+++++++||+++||+
T Consensus 169 -----------------------~~-------------i~~~g--~~~f~e~--c~~~~~~~~~~~~~~~~rlG~~iDw~ 208 (1205)
T PTZ00427 169 -----------------------ED-------------ILKMG--IDVYNEK--CRGIVLKYSNEWVKTVERIGRWIDFK 208 (1205)
T ss_pred -----------------------cc-------------hhhcC--HHHHHHH--HHHHHHHHHHHHHHHHHHhCcEEecC
Confidence 00 01122 3444443 57999999999999999999999999
Q ss_pred CceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhh--ccCCCCCCeeEEEEEEeeccCCcc---
Q psy5309 246 RTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDR--ASGEGVGPQEYTLIKMRLVKPYPA--- 320 (1618)
Q Consensus 246 ~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~y~~~~~~~~~~~~~--- 320 (1618)
++|.|++ |.|.+.|+|+|.+|+++|+||+|.+||+|||+|+|+|||+|| +|++..+|+.|+.|++ .+..+.
T Consensus 209 ~~y~T~d--~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l--~~~~~~~~~ 284 (1205)
T PTZ00427 209 NDYKTMD--KTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVL--CSDFPKVEE 284 (1205)
T ss_pred CCcCcCC--HHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeec--ccccccccc
Confidence 9999999 889999999999999999999999999999999999999999 7889999999866544 221000
Q ss_pred -----------------ccc----------------cCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccE
Q psy5309 321 -----------------KLC----------------CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPV 367 (1618)
Q Consensus 321 -----------------~~~----------------~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~ 367 (1618)
.+. ....++.+++||||||||||||+||||||++.|+.+..+.+++.
T Consensus 285 ~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~ 364 (1205)
T PTZ00427 285 ECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRV 364 (1205)
T ss_pred cccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeE
Confidence 000 00012469999999999999999999999999999865456677
Q ss_pred EEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEec
Q psy5309 368 FLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVA 447 (1618)
Q Consensus 368 ~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~ 447 (1618)
+|++..+... +++ .+.++ ....+|+++++|..+. |.+++|+
T Consensus 365 ~i~a~~~~~~-~~~-------------------------------~~~~~-----~~~~~v~~~~~G~~L~--g~~Y~pl 405 (1205)
T PTZ00427 365 VIVGECRLEW-IMK-------------------------------ELKWN-----VEDLKIVNRFKGKELK--GLRYKPL 405 (1205)
T ss_pred EEEehHHHHH-HHH-------------------------------hhccc-----ccccEEEEEeechhhC--CCeeeCC
Confidence 7777663322 110 00111 0135667778888887 7777755
Q ss_pred cccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEE
Q psy5309 448 LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYT 527 (1618)
Q Consensus 448 l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~ 527 (1618)
+. +|... |+ ..|. ++.+
T Consensus 406 ~~--~~~~~-------------------~~----------------------~~~~--------------------~~pV 422 (1205)
T PTZ00427 406 FT--NFYEK-------------------YN----------------------FKER--------------------AYKI 422 (1205)
T ss_pred cc--ccccc-------------------cc----------------------cCCc--------------------eeEE
Confidence 42 01000 00 0011 2236
Q ss_pred eeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchh
Q psy5309 528 VAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDE 607 (1618)
Q Consensus 528 ~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~ 607 (1618)
+++ ++|+++.|||+| |+ +|+|| ++||+++.+
T Consensus 423 i~~--------------d~V~~~~GTGiV------h~--------aPahg------------~~Dy~v~~k--------- 453 (1205)
T PTZ00427 423 LAD--------------DFVTDDAGTGIV------HC--------APTYG------------EDDFRVCKK--------- 453 (1205)
T ss_pred Ecc--------------CccCCCCCceee------Ee--------cCCCC------------hhHHHHHHH---------
Confidence 654 899999999999 99 99999 999998876
Q ss_pred hhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccH
Q psy5309 608 QWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDK 687 (1618)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~ 687 (1618)
| |+... ...+++ ++-|
T Consensus 454 -~------------------------------gL~~~------------~~~~~~--------------------~~vd- 469 (1205)
T PTZ00427 454 -N------------------------------GVIDP------------EKNIFI--------------------DPLD- 469 (1205)
T ss_pred -c------------------------------CCCCc------------cccccc--------------------cccC-
Confidence 4 33100 000011 0011
Q ss_pred HHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEee
Q psy5309 688 DKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSV 765 (1618)
Q Consensus 688 ~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v 765 (1618)
.+|+|+ +|+|+|+.|+|||+.|+++|++.|+|
T Consensus 470 ---------------~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L------------------------------- 503 (1205)
T PTZ00427 470 ---------------ANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRL------------------------------- 503 (1205)
T ss_pred ---------------CCceecCCCcccCCCCHHHhHHHHHHHHHhCCCe-------------------------------
Confidence 367776 68999999999999999999999976
Q ss_pred eCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-------ccCcceeecCCchHHHHHHHHHhcccccChHH-HHHHHH
Q psy5309 766 PSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-------LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEV-RRNFGA 837 (1618)
Q Consensus 766 ~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-------~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~-k~~~~~ 837 (1618)
++.++|.|+||||||+ +++||||++ +++++++++++++|+|+|+++ +++|.+
T Consensus 504 ------------------~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~--~~~k~~~l~~~~~i~w~P~~~~~~r~~~ 563 (1205)
T PTZ00427 504 ------------------LSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRV--SNSTNELVKNNETTYWIPAHIKEKKFHN 563 (1205)
T ss_pred ------------------eeeeeeeccCCEeCCCCCEEEEEecceeEEeC--cHHHHHHHHcCCccEEeCchhhHhHHHH
Confidence 5678999999999998 799999999 689999999999999999999 589999
Q ss_pred hhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCC------CccCCC--------CcCC
Q psy5309 838 SLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN------GNALNI--------KAED 903 (1618)
Q Consensus 838 ~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~------~~~l~~--------~~~~ 903 (1618)
||++++||||||||+||||||+ |+|+.| ..+++.++++++.+.....|.. .....+ ....
T Consensus 564 wl~n~~DWcISRqR~WGtPIPv---W~~~~~---~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~ 637 (1205)
T PTZ00427 564 WIKDAKDWCISRNRYWGTPIPI---WADEKM---ETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLK 637 (1205)
T ss_pred HHhcCccceeeeccccCcccee---EEcCCC---CeEeccCCHHHHHHHhccccchhhcccccChhhccCCcccccccee
Confidence 9999999999999999999999 999743 3566777887765421000000 010000 1246
Q ss_pred CCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCC
Q psy5309 904 LTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANG 983 (1618)
Q Consensus 904 l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g 983 (1618)
..+|++|+||+|+..+-...+.|.+. .++.|++|||+|++++|.||+|| |
T Consensus 638 r~~DVlD~WFdSg~~p~a~~~~P~~~---~~~~f~~~fPaD~i~eG~Dq~rg------------W--------------- 687 (1205)
T PTZ00427 638 RIPEVFDCWFESGSMPYAKVHYPFST---EKEDFHKIFPADFIAEGLDQTRG------------W--------------- 687 (1205)
T ss_pred ecCceEEEEEeCCCChHHHhCCCccc---chhhHhccCCceEEEEecchhcc------------H---------------
Confidence 78999999999998543344444321 24678899999999999999998 3
Q ss_pred ccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHH
Q psy5309 984 HLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1063 (1618)
Q Consensus 984 ~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii 1063 (1618)
|+++++. |++
T Consensus 688 --------------f~s~l~~----------------s~~---------------------------------------- 697 (1205)
T PTZ00427 688 --------------FYTLLVI----------------STL---------------------------------------- 697 (1205)
T ss_pred --------------HHHHHHH----------------HHH----------------------------------------
Confidence 1100000 000
Q ss_pred hhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy5309 1064 KKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDH 1143 (1618)
Q Consensus 1064 ~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~ 1143 (1618)
T Consensus 698 -------------------------------------------------------------------------------- 697 (1205)
T PTZ00427 698 -------------------------------------------------------------------------------- 697 (1205)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhh
Q psy5309 1144 YTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYI 1223 (1618)
Q Consensus 1144 ~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~ 1223 (1618)
T Consensus 698 -------------------------------------------------------------------------------- 697 (1205)
T PTZ00427 698 -------------------------------------------------------------------------------- 697 (1205)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCC-CcCcccCHHHHHHHHHH
Q psy5309 1224 HTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS-VEDANFVESMADAAVKK 1301 (1618)
Q Consensus 1224 ~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~-~~D~~fs~~~l~~~~~~ 1301 (1618)
. .+.+||++|++||||+| +|+|||||+||||||.++|++||||+|||||++++.. ++|++|+++.+.+..+.
T Consensus 698 -l-----~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~ 771 (1205)
T PTZ00427 698 -L-----FDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKS 771 (1205)
T ss_pred -h-----cCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHH
Confidence 0 12357899999999999 9999999999999999999999999999999987554 79999999987653333
Q ss_pred h-hhhh--hhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHH-HHhhcccccCCCCCCCcchHHHHHHHHHHHHHHH
Q psy5309 1302 F-SADG--MRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVK-EILATQSTLRTGSQDSFNDKVFLSEMNLKIKETE 1377 (1618)
Q Consensus 1302 ~-n~~~--~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~ 1377 (1618)
+ ++.+ .||.+.++... .. .. ..|+.. +.........+|+||+++++++++.++
T Consensus 772 ~l~klwN~~rF~~~~i~~~----------~~------------~~~~~f~~~-~~~~~~~~~~~DrWILs~l~~li~~v~ 828 (1205)
T PTZ00427 772 FILPFYHSFRFFSQEVTRY----------EC------------LNKKQFLFN-TDYIYKNDNIMDQWIFSSVQSLTKSVH 828 (1205)
T ss_pred HHHHHHHHHHHHHhccccc----------cc------------cccccCCcC-cccccccCCHHHHHHHHHHHHHHHHHH
Confidence 2 2111 12222111000 00 00 001000 000012345689999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHH-HHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhh
Q psy5309 1378 DHYTKMLFKEALRTGFFELQA-ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKM 1456 (1618)
Q Consensus 1378 ~~~e~~~f~~a~~~i~~~f~~-~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~ 1456 (1618)
++|++|+|++|+++++ +|+. ++|+|+
T Consensus 829 ~~me~Y~f~~A~~~i~-~Fi~~lsnwYI---------------------------------------------------- 855 (1205)
T PTZ00427 829 TEMKAYKLYNVLPKLL-QFIENLTNWYI---------------------------------------------------- 855 (1205)
T ss_pred HHHHccCHHHHHHHHH-HHHHHhccHHH----------------------------------------------------
Confidence 9999999999999986 8875 777777
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCC-----------------
Q psy5309 1457 LFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK----------------- 1519 (1618)
Q Consensus 1457 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~----------------- 1519 (1618)
+.+|+|||...++.++. .++++|+++|..+++|||||+||+|||+|+.|+.
T Consensus 856 ---e~~K~rl~~~~~~~~~~---------~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~ 923 (1205)
T PTZ00427 856 ---RLNRDRMRGSLGEENCL---------QSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTK 923 (1205)
T ss_pred ---HHcchhhccCCCcHHHH---------HHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccccccccccccc
Confidence 44556776543222332 3556788999999999999999999999998852
Q ss_pred ---------CCceEeccCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1520 ---------KGSIVKARWPEGGP---IDDILVRSSSYLMEAAHAFRLQVKNH 1559 (1618)
Q Consensus 1520 ---------~~sv~~~~~p~~~~---~~~~l~~~~~~~~~~i~~~R~~~~~~ 1559 (1618)
.+|||++.||++++ +|..+++.++.+++++.++|+.+.+.
T Consensus 924 ~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~~~R~~R~~~ 975 (1205)
T PTZ00427 924 EGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDVILLGRVLRERR 975 (1205)
T ss_pred cccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 25999999999773 58899999999999999999988763
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-121 Score=1213.82 Aligned_cols=773 Identities=22% Similarity=0.286 Sum_probs=597.7
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
++-.+.++|++||++|+++++|++..+.+ .++
T Consensus 9 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~------------------------------------------------~~~ 40 (975)
T PRK06039 9 SQPDFPALEEEVLKFWKENDIFEKSIENR------------------------------------------------EGG 40 (975)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCcccc------------------------------------------------CCC
Confidence 45678999999999999999999876531 246
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|++++|||||||.||||||+|++++|+++||+||+||+|++++||||||+|||..|+|. +|+..
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~------l~~~~-------- 106 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKE------LGISG-------- 106 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHH------hCccc--------
Confidence 8899999999999999999999999999999999999999999999999999999999872 24321
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+ + .+.++| .+++++. |++|+.++++.+++++++||+++||+++
T Consensus 107 ------------------~--~-------------~i~~~g--~~~f~~~--c~~~~~~~~~~~~~~~~rlG~~~Dw~~~ 149 (975)
T PRK06039 107 ------------------K--K-------------DIEEYG--IEKFNEK--CRESVLRYTDEWEEYTERLGRWVDFDNP 149 (975)
T ss_pred ------------------c--c-------------chhhcC--HHHHHHH--HHHHHHHHHHHHHHHHHHhCceeecCCC
Confidence 0 0 011233 3444444 5799999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhc--cCCCCCCeeEEEEEEeeccCCccccccC
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRA--SGEGVGPQEYTLIKMRLVKPYPAKLCCL 325 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 325 (1618)
|.|+| |.|.++|+|+|.+|+++|+||+|.+||+|||.|+|+|||+||+ |.+..+|+.|+.|++ .
T Consensus 150 y~T~d--~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l--~---------- 215 (975)
T PRK06039 150 YKTLD--NEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKL--K---------- 215 (975)
T ss_pred cCcCC--HHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEe--c----------
Confidence 99999 8899999999999999999999999999999999999999999 778888988765543 1
Q ss_pred CCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 326 DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 326 ~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
++++.+|+||||||||||||+||||||++.|+.+.. +.+.+|++...... +.
T Consensus 216 ~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~--~~~~yi~a~~~~~~-~~------------------------- 267 (975)
T PRK06039 216 GEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEG--GGEVYILAEALLEK-VL------------------------- 267 (975)
T ss_pred CCCCCEEEEEECCccccccceEEEECCCCceEEEec--CCeEEEEhHHHHHH-Hh-------------------------
Confidence 123569999999999999999999999999999863 33556666542211 00
Q ss_pred eccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhh
Q psy5309 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGA 485 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~ 485 (1618)
+ .+.+++.+++|..+. |..++++++.+ ...
T Consensus 268 ---------~--------~~~~~~~~~~G~~L~--G~~~~~P~~~~--~~~----------------------------- 297 (975)
T PRK06039 268 ---------K--------EDYEVVETFKGSELE--GLEYEPPFPYF--ADE----------------------------- 297 (975)
T ss_pred ---------h--------cccEEEeeecCcccc--CCEEECCcccc--cCC-----------------------------
Confidence 0 123455667777777 77777666410 000
Q ss_pred hhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCC
Q psy5309 486 SLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSA 565 (1618)
Q Consensus 486 ~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~ 565 (1618)
...+| ++++ ++|+++.|||+| |+
T Consensus 298 ----------------~~~~p--------------------ii~~--------------~~V~~~~GTG~V------~~- 320 (975)
T PRK06039 298 ----------------KNAFR--------------------VVLA--------------DFVTTEDGTGIV------HI- 320 (975)
T ss_pred ----------------cceeE--------------------EEec--------------CccCCCCCccce------ee-
Confidence 01134 6665 789999999999 99
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 645 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1618)
+|+|+ |+||.++.+ | |++
T Consensus 321 -------aPahg------------~~D~~~~~~----------~------------------------------~l~--- 338 (975)
T PRK06039 321 -------APAFG------------EDDFEVGKK----------Y------------------------------GLP--- 338 (975)
T ss_pred -------CCCCC------------hHHHHHHHH----------c------------------------------CCC---
Confidence 99999 999998866 4 432
Q ss_pred cceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHH
Q psy5309 646 NCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKL 723 (1618)
Q Consensus 646 ~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~ 723 (1618)
++++|+ .+|+|+ +|+|+|+.+++||++
T Consensus 339 ------------~~~~id---------------------------------------~~G~~~~~~~~~~G~~v~eA~~~ 367 (975)
T PRK06039 339 ------------VVCPVD---------------------------------------DDGRFTEEVPDYAGKFVKDADKE 367 (975)
T ss_pred ------------ccceeC---------------------------------------CCceEcCCCccccCCCHHHhhHH
Confidence 112221 267776 689999999999999
Q ss_pred HHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe----
Q psy5309 724 LQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA---- 799 (1618)
Q Consensus 724 i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~---- 799 (1618)
|+++|++.|++ ++.++|.|+||||||+
T Consensus 368 Ii~~L~~~g~l-------------------------------------------------~~~~~~~h~~p~c~R~g~pv 398 (975)
T PRK06039 368 IIRDLKERGLL-------------------------------------------------FKAETYEHSYPHCWRCDTPL 398 (975)
T ss_pred HHHHHHhCCCE-------------------------------------------------eeeeeecCCCCEeCCCCCEE
Confidence 99999999975 5678899999999998
Q ss_pred ---ccCcceeecCCchHHHHHHHHHhcccccChHHHH-HHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEe
Q psy5309 800 ---LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRR-NFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYM 875 (1618)
Q Consensus 800 ---~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~-~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~ 875 (1618)
+++||||++ ++||+++++.+++++|+|+++++ ++.+||++++||||||||+||||||+ |+|++| +.++
T Consensus 399 ~~~~~~qWFi~~--~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPi---w~~~~~---g~~~ 470 (975)
T PRK06039 399 IYYATESWFIRV--TKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPI---WRCEDC---GRID 470 (975)
T ss_pred EEEecCeeeEec--HHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceE---EEecCC---CeEE
Confidence 799999999 69999999999999999999999 99999999999999999999999999 999854 4678
Q ss_pred ehhHHHHHhhcCccCCCCCcc--C----------C---CCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccc
Q psy5309 876 AYYTVAHLLQGGTFRGENGNA--L----------N---IKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYW 940 (1618)
Q Consensus 876 ~~~ti~~~l~~~~~~g~~~~~--l----------~---~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w 940 (1618)
++++++++.+. .|..... + . .......++++|+||+|+..+-...+.+.++ ++.|++|
T Consensus 471 v~~~~~el~~~---~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~----~~~f~~~ 543 (975)
T PRK06039 471 VIGSIEELEEL---FGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFEN----KEWFEKH 543 (975)
T ss_pred EeccHHHHHHH---hCCCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccC----hhhhhcc
Confidence 88888888642 2321000 0 0 1123456799999999886332233333322 3457889
Q ss_pred cccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhh
Q psy5309 941 YPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYI 1020 (1618)
Q Consensus 941 ~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~ 1020 (1618)
||+|++++|+||+|| ||+..+ +.
T Consensus 544 ~Pad~~~~G~Di~r~------Wf~~l~-----------------------------------~~---------------- 566 (975)
T PRK06039 544 FPADFIVEGIDQTRG------WFYTLL-----------------------------------AL---------------- 566 (975)
T ss_pred CCceEEEechhhHhh------HHHHHH-----------------------------------HH----------------
Confidence 999999999998877 111000 00
Q ss_pred hhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHH
Q psy5309 1021 HTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLY 1100 (1618)
Q Consensus 1021 ~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~ 1100 (1618)
+
T Consensus 567 ---------------------------------------------------------~---------------------- 567 (975)
T PRK06039 567 ---------------------------------------------------------S---------------------- 567 (975)
T ss_pred ---------------------------------------------------------H----------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHH
Q psy5309 1101 TFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRT 1180 (1618)
Q Consensus 1101 N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~ 1180 (1618)
.
T Consensus 568 ------------------------------------------------------~------------------------- 568 (975)
T PRK06039 568 ------------------------------------------------------T------------------------- 568 (975)
T ss_pred ------------------------------------------------------H-------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCc
Q psy5309 1181 LVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNF 1259 (1618)
Q Consensus 1181 ~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNv 1259 (1618)
+. .+..||+.+++|||+++ +|+|||||+||+
T Consensus 569 ---------------------------------------------~~---~~~~pfk~v~~hG~Vld~~G~KMSKSlGNv 600 (975)
T PRK06039 569 ---------------------------------------------AL---FDRPPYKNVLVHGHVLDEDGQKMSKSLGNY 600 (975)
T ss_pred ---------------------------------------------Hh---cCCCcccEEEEeeeEECCCCCCcCCCCCCc
Confidence 00 02346899999999999 999999999999
Q ss_pred CCHHHHHHhcCcceeeeehhccCCCCcCcccCHHH-HHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhH
Q psy5309 1260 LTLTEAVKKFSADGMRLCLADSGDSVEDANFVESM-ADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTF 1338 (1618)
Q Consensus 1260 I~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~-l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~ 1338 (1618)
|+|.++|++||||++||||+++++.++|++||++. ++...+.+|.. ||.++|.....+
T Consensus 601 IdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl------------~N~~~f~~~y~~--------- 659 (975)
T PRK06039 601 VDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTL------------WNVYSFFVLYAN--------- 659 (975)
T ss_pred CCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHH------------HHHHHHHHHHhh---------
Confidence 99999999999999999999998889999999998 43333333322 122333221111
Q ss_pred HHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHHhhhhcccchhHH
Q psy5309 1339 IEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA-ARDKYRELTAAEGGMHRTL 1417 (1618)
Q Consensus 1339 ~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~-~~n~Y~~~~~~~~~~~~~~ 1417 (1618)
+ ..++.....+....+..+|+|++++++.+++++.++|++|+|+.|++.++ +|+. ++|+|++.+
T Consensus 660 ---~-~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~-~f~~~lsn~Yi~~~---------- 724 (975)
T PRK06039 660 ---L-DGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIR-DFVDDLSNWYIRRS---------- 724 (975)
T ss_pred ---h-ccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHh----------
Confidence 0 01111101111233567899999999999999999999999999999985 9985 788888554
Q ss_pred HHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHH
Q psy5309 1418 VLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEV 1497 (1618)
Q Consensus 1418 ~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 1497 (1618)
|+|+|...++.+++ .++++|+++|..
T Consensus 725 ---------------------------------------------k~r~w~~~~~~~~~---------~a~~~L~~~L~~ 750 (975)
T PRK06039 725 ---------------------------------------------RRRFWKEEDDPDKL---------AAYATLYTVLET 750 (975)
T ss_pred ---------------------------------------------hhhhccCCCcHHHH---------HHHHHHHHHHHH
Confidence 45555543332333 245678899999
Q ss_pred HHHHhccchhhHHHHHHHHcC---CCCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1498 QALLLCPVCPHVAEHVYQLLG---KKGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1498 ~~~llaPi~P~~aEeiw~~l~---~~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
+++|||||+||+|||+|+.|+ ..+|||.+.||++++ +|+.++++++.+++++.++|+.+++
T Consensus 751 l~~lLaPf~Pf~aEei~~~L~~~~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~ 816 (975)
T PRK06039 751 LSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDESLIDEELEEAMDLVREIVSLGRSARKK 816 (975)
T ss_pred HHHHHHhhhHHHHHHHHHhccccCCCCeeEecCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 457999999999874 4889999999999999999998875
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-120 Score=1135.37 Aligned_cols=714 Identities=24% Similarity=0.373 Sum_probs=553.0
Q ss_pred hhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCe
Q psy5309 11 YLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKF 90 (1618)
Q Consensus 11 ~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 90 (1618)
+..++|++|++.|++++.|+..++. ..++|
T Consensus 6 dp~~iE~k~~~~W~~~~~f~~~~~~--------------------------------------------------~~~~f 35 (877)
T COG0525 6 DPKEIEEKWYKKWEESGYFKPDPNE--------------------------------------------------DKPPF 35 (877)
T ss_pred ChhhhhHHHHHHHHhcCCccCCCCC--------------------------------------------------CCCCc
Confidence 4578899999999999988776543 11559
Q ss_pred EEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy5309 91 FTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQT 170 (1618)
Q Consensus 91 ~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~ 170 (1618)
+|..||||+||.||||||++.+++|+++||+||+||+|+|++|+||||+|+|..+|+... ..|+..
T Consensus 36 ~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~---~~g~~r----------- 101 (877)
T COG0525 36 SIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLA---AEGITR----------- 101 (877)
T ss_pred EEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHH---HcCCCc-----------
Confidence 999999999999999999999999999999999999999999999999999999987422 124331
Q ss_pred CCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceee
Q psy5309 171 DKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFIT 250 (1618)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T 250 (1618)
. ..+.+++.+. +++|.++....|++||++||+++||+++|+|
T Consensus 102 ------------------~------------------d~gRe~Fl~~--~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fT 143 (877)
T COG0525 102 ------------------H------------------DLGREEFLKK--CWEWKEESGGTIREQLRRLGVSVDWSRERFT 143 (877)
T ss_pred ------------------c------------------ccCHHHHHHH--HHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 1 2234444444 4899999999999999999999999999999
Q ss_pred cCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCCc
Q psy5309 251 TDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPV 330 (1618)
Q Consensus 251 ~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 330 (1618)
|| |.+.++|+++|.+||++|+||+|+++|||||+|+|||||.||++.+..+. ...+++++ .+++.
T Consensus 144 mD--~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~--L~~i~y~l-----------~~~~~ 208 (877)
T COG0525 144 MD--PGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGK--LYYIKYPL-----------ADGDG 208 (877)
T ss_pred CC--HHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhccceeeee--EEEEEEec-----------CCCCc
Confidence 99 78999999999999999999999999999999999999999999987642 33344433 23456
Q ss_pred EEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccc
Q psy5309 331 FLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTER 409 (1618)
Q Consensus 331 ~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~ 409 (1618)
+|+|||||||||+|+|||||||+| ||..+ .|+.+.+
T Consensus 209 ~i~VATTRPEtmlgdtAVaVhP~DeRYk~L---vGk~v~l---------------------------------------- 245 (877)
T COG0525 209 YLVVATTRPETLLGDTAVAVHPDDERYKHL---VGKEVIL---------------------------------------- 245 (877)
T ss_pred eEEEEecCccccccceEEEECCCChhhHhh---cCCEEec----------------------------------------
Confidence 999999999999999999999999 89887 5654422
Q ss_pred cccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhc
Q psy5309 410 SARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNW 489 (1618)
Q Consensus 410 ~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~ 489 (1618)
++.
T Consensus 246 -------------------------------------Pl~---------------------------------------- 248 (877)
T COG0525 246 -------------------------------------PLV---------------------------------------- 248 (877)
T ss_pred -------------------------------------CCC----------------------------------------
Confidence 111
Q ss_pred cccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCC
Q psy5309 490 LHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPP 569 (1618)
Q Consensus 490 l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~ 569 (1618)
|..|| ++++ .+|+++.|||.| +.
T Consensus 249 ------------~r~Ip--------------------IiaD--------------~~VD~eFGTG~V------kI----- 271 (877)
T COG0525 249 ------------GREIP--------------------IIAD--------------EYVDPEFGTGAV------KI----- 271 (877)
T ss_pred ------------CCeee--------------------eecC--------------cccCCcCCCceE------Ee-----
Confidence 22377 6655 789999999999 88
Q ss_pred CCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCccccccee
Q psy5309 570 KCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVI 649 (1618)
Q Consensus 570 ~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (1618)
.|+|+ +.||.+..+ | ++
T Consensus 272 ---tpahD------------~nD~e~~kr----------h------------------------------~L-------- 288 (877)
T COG0525 272 ---TPAHD------------FNDYEVGKR----------H------------------------------NL-------- 288 (877)
T ss_pred ---cCCCC------------chhhhhhhc----------C------------------------------CC--------
Confidence 89999 999988877 3 22
Q ss_pred eeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--e-cccCCcchHHHHHHHHH
Q psy5309 650 VFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--V-GEFKGKKVQEVKKLLQK 726 (1618)
Q Consensus 650 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~-~~~~G~~v~~a~~~i~~ 726 (1618)
..+.||+ .+|+|+ + |+|+||.+++||++|++
T Consensus 289 -------p~i~i~d---------------------------------------~dG~in~~~~~~~~Gl~r~eAR~kIv~ 322 (877)
T COG0525 289 -------PLINIID---------------------------------------EDGRINEEAAGEFAGLDRFEARKKIVE 322 (877)
T ss_pred -------CceEEEC---------------------------------------CCCeeccCCccccCCCcHHHHHHHHHH
Confidence 1223332 267776 4 59999999999999999
Q ss_pred HHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-------
Q psy5309 727 KIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA------- 799 (1618)
Q Consensus 727 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~------- 799 (1618)
+|++.|+| ++.+.+.|+-|||||+
T Consensus 323 ~L~~~GlL-------------------------------------------------vk~e~~~h~V~~~~R~g~~IEp~ 353 (877)
T COG0525 323 DLEEQGLL-------------------------------------------------VKIEPHKHSVGHCERCGTPIEPL 353 (877)
T ss_pred HHHhCCCe-------------------------------------------------EeeeeccccCccccCCCceeeee
Confidence 99999986 5678899999999998
Q ss_pred ccCcceeecCCchHHHHHHHHHh--cccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeeh
Q psy5309 800 LCDQWYLDYGEPTWKAAAEQCLA--NMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAY 877 (1618)
Q Consensus 800 ~~~QWfi~~~~~~~k~~~~~~i~--~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~ 877 (1618)
+++|||+++ .++++.++++.+ +++|+|+.+++++.+|+++++||||||||+||+|||+ |||..| +.+|++-
T Consensus 354 ls~QWfVk~--~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPv---Wy~~~~--g~v~v~~ 426 (877)
T COG0525 354 LSKQWFVKV--LELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPV---WYCKEC--GNVVVAE 426 (877)
T ss_pred ecceeeEEh--HhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccce---EEecCC--CcEEeCC
Confidence 799999999 799999999999 9999999999999999999999999999999999999 999733 4455532
Q ss_pred hHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccch
Q psy5309 878 YTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHL 957 (1618)
Q Consensus 878 ~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl 957 (1618)
. . ...+.. ...|+. ..++++.|++|+||.+.+
T Consensus 427 ~-----~-------------~~~~~~----------------~~~~~~--~~~~qd~DVLDTWFSS~L------------ 458 (877)
T COG0525 427 E-----E-------------PEDPAA----------------AEKCPK--EELEQDEDVLDTWFSSSL------------ 458 (877)
T ss_pred c-----c-------------ccchhh----------------hccCch--hcccCCcchhhhhhhccc------------
Confidence 1 0 000000 001111 345566788888877765
Q ss_pred hHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCC----CCCcC
Q psy5309 958 TFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDE----PEMWP 1033 (1618)
Q Consensus 958 ~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~----~~~~p 1033 (1618)
| | +++..||.. ..-.|
T Consensus 459 ----------w-------P-------------------------------------------fstlgWp~~t~~l~~fyP 478 (877)
T COG0525 459 ----------W-------P-------------------------------------------FSTLGWPEETPDLKKFYP 478 (877)
T ss_pred ----------c-------c-------------------------------------------ccccCCCCcchHHHhcCC
Confidence 4 1 223334321 00013
Q ss_pred cEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhc
Q psy5309 1034 RGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQ 1113 (1618)
Q Consensus 1034 k~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~ 1113 (1618)
..+++.|| |++|+|+++. +
T Consensus 479 t~llvtG~---------------------------DIIffWvarm-------------------------------i--- 497 (877)
T COG0525 479 TDLLVTGH---------------------------DIIFFWVARM-------------------------------I--- 497 (877)
T ss_pred Cccccccc---------------------------hhhHHHHHHH-------------------------------H---
Confidence 44444444 6666554432 0
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhc
Q psy5309 1114 STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLL 1193 (1618)
Q Consensus 1114 ~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lL 1193 (1618)
++.
T Consensus 498 -------------------------------------------~~~---------------------------------- 500 (877)
T COG0525 498 -------------------------------------------MRG---------------------------------- 500 (877)
T ss_pred -------------------------------------------HHH----------------------------------
Confidence 000
Q ss_pred CcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcc
Q psy5309 1194 CPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSAD 1272 (1618)
Q Consensus 1194 aP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD 1272 (1618)
.+. .++.|++.|++||.|+| +|+|||||+||||||.++|++||||
T Consensus 501 -----------------------------~~~-----~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaD 546 (877)
T COG0525 501 -----------------------------LHL-----TGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGAD 546 (877)
T ss_pred -----------------------------HHh-----cCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChH
Confidence 000 13467999999999999 9999999999999999999999999
Q ss_pred eeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhccccc
Q psy5309 1273 GMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTL 1352 (1618)
Q Consensus 1273 ~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1352 (1618)
||||||++.+..++|++|+++.+++..++.|+.| |..+|+...++.....
T Consensus 547 AlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlW------------------------------Na~Rfv~~~~~~~~~~ 596 (877)
T COG0525 547 ALRFTLASLASPGRDINFDEKRVEGYRNFLNKLW------------------------------NATRFVLMNLDDLGPD 596 (877)
T ss_pred HHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHH------------------------------hHHHHHHhcccccCcc
Confidence 9999999998899999999999988555555432 2223332222111111
Q ss_pred CCC-CCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcC
Q psy5309 1353 RTG-SQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCP 1431 (1618)
Q Consensus 1353 ~~~-~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P 1431 (1618)
... ...+..|+||++++++++++++++|++|+|..|.++++ +|+ |-++|+
T Consensus 597 ~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly-~F~-----W~~fcD----------------------- 647 (877)
T COG0525 597 DLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALY-EFI-----WNDFCD----------------------- 647 (877)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHh-----HHHHHH-----------------------
Confidence 100 22357899999999999999999999999999999985 887 344443
Q ss_pred cchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHH
Q psy5309 1432 VCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAE 1511 (1618)
Q Consensus 1432 ~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aE 1511 (1618)
||. |++|.+++.+ ...++ .++.+|.++|+.+++||||||||+||
T Consensus 648 --------------------~Yl-----El~K~~l~~~--~~~~~---------~a~~tL~~vl~~~lrLLhPfmPfiTE 691 (877)
T COG0525 648 --------------------WYL-----ELAKPRLYGG--EEEKR---------AARATLYYVLDTLLRLLHPFMPFITE 691 (877)
T ss_pred --------------------HHH-----HHhhhhhcCc--HHHHH---------HHHHHHHHHHHHHHHHhCCCCccchH
Confidence 222 6666676654 11122 46678889999999999999999999
Q ss_pred HHHHHcCCCCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1512 HVYQLLGKKGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1512 eiw~~l~~~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
|+||.+...+||+.+.||.+.+ .|+.++..++.+.+++.++|+....
T Consensus 692 ei~q~l~~~~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~~r~e 740 (877)
T COG0525 692 EIWQKLPGTESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRNLRAE 740 (877)
T ss_pred HHHHhcCCCCeEEeccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998778999999999863 4888999999999999999998764
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-120 Score=1211.13 Aligned_cols=800 Identities=19% Similarity=0.227 Sum_probs=595.0
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
+.-.++++|++|+++|+++++|++..+.+ .++
T Consensus 6 ~~~~~~~~E~~~~~~W~e~~~f~~~~~~~------------------------------------------------~~~ 37 (1159)
T PLN02882 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRT------------------------------------------------EGL 37 (1159)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccccccc------------------------------------------------CCC
Confidence 34478899999999999999999876532 246
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|++++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+|||..+++. +|+...
T Consensus 38 ~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~------lgi~~~------- 104 (1159)
T PLN02882 38 PEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKK------LGIKRR------- 104 (1159)
T ss_pred CCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHH------cCCCCc-------
Confidence 7899999999999999999999999999999999999999999999999999999998762 344310
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+++ .++ +.+++++. |++|+.++.+.+++++++||+++||++.
T Consensus 105 ---------------------~~i-------------~~~--g~~~f~~~--c~~~~~~~~~~~~~~~~rlG~~~D~~~~ 146 (1159)
T PLN02882 105 ---------------------DDV-------------LKM--GIDKYNEE--CRSIVTRYSKEWEKTVTRTGRWIDFEND 146 (1159)
T ss_pred ---------------------cch-------------hhc--CHHHHHHH--HHHHHHHHHHHHHHHHHHcCcEEECCCC
Confidence 000 112 23444444 5799999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhh--ccCCCCCCeeEEEEEEeeccCCccccccC
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDR--ASGEGVGPQEYTLIKMRLVKPYPAKLCCL 325 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 325 (1618)
|.|++ |.|.+.|+|+|.+|+++|+||+|.+||+|||.|+|+||++|+ +|.+..+|+.|+.|+ +.+
T Consensus 147 y~T~d--~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~--l~~--------- 213 (1159)
T PLN02882 147 YKTMD--PKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFP--IVG--------- 213 (1159)
T ss_pred cCcCC--HHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEE--ecC---------
Confidence 99999 889999999999999999999999999999999999999988 688889999876544 321
Q ss_pred CCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 326 DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 326 ~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
+..+.+++||||||||||||+||||||+++|+.+....+++.+|++...... +.+.. .. ..++.
T Consensus 214 ~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~-~~~~~--------~~----~~~~~--- 277 (1159)
T PLN02882 214 DPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSA-LPTAK--------PK----SKKGS--- 277 (1159)
T ss_pred CCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHH-HHhhh--------hc----ccccc---
Confidence 0123699999999999999999999999999998642134567777653211 11000 00 00000
Q ss_pred eccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhh
Q psy5309 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGA 485 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~ 485 (1618)
...++ ....+|+++++|.++. |.+++|++. +|-..
T Consensus 278 -------~~~~~-----~~~~~v~~~~~G~~L~--g~~y~p~~~--~~~~~----------------------------- 312 (1159)
T PLN02882 278 -------KPENA-----AEGYEVLAKVPGSSLV--GKKYEPLFD--YFSEF----------------------------- 312 (1159)
T ss_pred -------ccccc-----ccccEEEEEecchhhc--CCEEECCcc--ccccc-----------------------------
Confidence 00000 1135678888888888 777765442 00000
Q ss_pred hhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCC
Q psy5309 486 SLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSA 565 (1618)
Q Consensus 486 ~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~ 565 (1618)
.|..+| ++++ ++|+++.|||+| |+
T Consensus 313 ---------------~~~~~~--------------------Vi~~--------------~~V~~~~GTGiV------h~- 336 (1159)
T PLN02882 313 ---------------SDTAFR--------------------VVAD--------------DYVTDDSGTGVV------HC- 336 (1159)
T ss_pred ---------------cCceEE--------------------EEcc--------------CccCCCCCccee------Ee-
Confidence 011133 6654 899999999999 99
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 645 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1618)
+|+|| ++||+++.+ + |+...
T Consensus 337 -------aPahG------------~~Dy~v~~~----------~------------------------------gl~~~- 356 (1159)
T PLN02882 337 -------APAFG------------EDDYRVCLA----------N------------------------------GIIEK- 356 (1159)
T ss_pred -------cCCCC------------hhHHHHHHH----------c------------------------------CCCcc-
Confidence 99999 999999877 3 33100
Q ss_pred cceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHH
Q psy5309 646 NCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKL 723 (1618)
Q Consensus 646 ~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~ 723 (1618)
.. | +.++.| .+|+|+ +|+|+|+.|++||+.
T Consensus 357 ----------~~--~--------------------~~~~vd----------------~~G~~~~~~~~~~G~~v~eA~~~ 388 (1159)
T PLN02882 357 ----------GG--N--------------------LPVPVD----------------DDGCFTEKVTDFSGRYVKDADKD 388 (1159)
T ss_pred ----------cc--C--------------------ccceEC----------------CCceEccCCcccCCCCHHHhhHH
Confidence 00 0 011112 268886 689999999999999
Q ss_pred HHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe----
Q psy5309 724 LQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA---- 799 (1618)
Q Consensus 724 i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~---- 799 (1618)
|++.|++.|+| ++.+++.|+|||||||
T Consensus 389 Ii~~Lk~~g~L-------------------------------------------------~~~~~~~Hsyp~cwR~~tpl 419 (1159)
T PLN02882 389 IIAAIKAKGRL-------------------------------------------------VKSGSITHSYPFCWRSDTPL 419 (1159)
T ss_pred HHHHHHHCCCc-------------------------------------------------cceeeeecCCCEeeCCCCEE
Confidence 99999999976 6778999999999998
Q ss_pred ---ccCcceeecCCchHHHHHHHHHhcccccChHHH-HHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEe
Q psy5309 800 ---LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR-RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYM 875 (1618)
Q Consensus 800 ---~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k-~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~ 875 (1618)
+++||||++ +++|+++++.+++|+|+|+++| +||.+||++++||||||||+||||||+ |+|++++ ..+
T Consensus 420 i~~a~~qWFi~~--~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPv---w~~~~~~---~~~ 491 (1159)
T PLN02882 420 IYRAVPSWFVKV--EEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPI---WISDDGE---EVV 491 (1159)
T ss_pred EEEecceeEEEc--HHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccce---EEeCCCC---eEE
Confidence 799999999 7999999999999999999995 799999999999999999999999999 9998643 345
Q ss_pred ehhHHHHHhhcCccCCCCC-----ccCCC--------CcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccc
Q psy5309 876 AYYTVAHLLQGGTFRGENG-----NALNI--------KAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYP 942 (1618)
Q Consensus 876 ~~~ti~~~l~~~~~~g~~~-----~~l~~--------~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p 942 (1618)
+..+++++.+.....+.+. ..+.+ ......++++|+||+||..+-...+.|.++ ++.|+.+||
T Consensus 492 ~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~----~~~f~~~~P 567 (1159)
T PLN02882 492 VIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFEN----KELFEKNFP 567 (1159)
T ss_pred ecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccC----hhHhhccCC
Confidence 5568888765211111110 00101 123456788888888887443345555433 345666788
Q ss_pred cceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhh
Q psy5309 943 VDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHT 1022 (1618)
Q Consensus 943 ~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~ 1022 (1618)
+|++++|+||+|+ |
T Consensus 568 aD~i~eG~Dq~Rg------------W------------------------------------------------------ 581 (1159)
T PLN02882 568 ADFVAEGLDQTRG------------W------------------------------------------------------ 581 (1159)
T ss_pred ceEEEEecchhhh------------H------------------------------------------------------
Confidence 8888888887777 2
Q ss_pred hccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHH
Q psy5309 1023 AIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTF 1102 (1618)
Q Consensus 1023 ~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~ 1102 (1618)
T Consensus 582 -------------------------------------------------------------------------------- 581 (1159)
T PLN02882 582 -------------------------------------------------------------------------------- 581 (1159)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHH
Q psy5309 1103 IEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLV 1182 (1618)
Q Consensus 1103 ~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l 1182 (1618)
T Consensus 582 -------------------------------------------------------------------------------- 581 (1159)
T PLN02882 582 -------------------------------------------------------------------------------- 581 (1159)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCC
Q psy5309 1183 LRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLT 1261 (1618)
Q Consensus 1183 ~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~ 1261 (1618)
|.+++..+....+.+||++|++|||+++ +|+|||||+||+|+
T Consensus 582 -------------------------------------f~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvId 624 (1159)
T PLN02882 582 -------------------------------------FYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPD 624 (1159)
T ss_pred -------------------------------------HHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCC
Confidence 1100011111113467899999999999 99999999999999
Q ss_pred HHHHHHhcCcceeeeehhccCCC-CcCcccCHHHHHHHHH-Hhhhhh--hhhhcccCCCCcchhhHHHHHhhhhhhhhhh
Q psy5309 1262 LTEAVKKFSADGMRLCLADSGDS-VEDANFVESMADAAVK-KFSADG--MRLCLADSGDSVEDANFVESMADAGILRLYT 1337 (1618)
Q Consensus 1262 P~~ii~~yGaD~lRl~l~~~~~~-~~D~~fs~~~l~~~~~-~~n~~~--~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~ 1337 (1618)
|.+++++||||+|||||+++... ++|++|+++.+.+.++ .++..+ +||++.+++++
T Consensus 625 P~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~-------------------- 684 (1159)
T PLN02882 625 PNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRL-------------------- 684 (1159)
T ss_pred HHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------------
Confidence 99999999999999999976332 6889999998776433 333221 23333222111
Q ss_pred HHHHHHHHhhcccccCC--C-CCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHHhhhhcccc
Q psy5309 1338 FIEWVKEILATQSTLRT--G-SQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA-ARDKYRELTAAEGGM 1413 (1618)
Q Consensus 1338 ~~~~~~~~~~~~~~~~~--~-~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~-~~n~Y~~~~~~~~~~ 1413 (1618)
..+.+++..+... . .....+|+|++++++++++.+.++|++|+|++|++.++ +|+. ++|+|++..+
T Consensus 685 ----~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~-~Fv~~lsN~YIe~~K----- 754 (1159)
T PLN02882 685 ----EVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLV-KFIDNLTNIYVRFNR----- 754 (1159)
T ss_pred ----hhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHhHHHHHhCC-----
Confidence 1111222111100 0 12356899999999999999999999999999999985 9886 8999997665
Q ss_pred hhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHH
Q psy5309 1414 HRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLR 1493 (1618)
Q Consensus 1414 ~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1493 (1618)
+|++...++.+++ .++++|++
T Consensus 755 --------------------------------------------------prl~~~~~~~~~~---------~al~tL~~ 775 (1159)
T PLN02882 755 --------------------------------------------------KRLKGRTGEEDCR---------TALSTLYN 775 (1159)
T ss_pred --------------------------------------------------HhhhCCCChHHHH---------HHHHHHHH
Confidence 3444332222222 35667889
Q ss_pred HHHHHHHHhccchhhHHHHHHHHcCC-----CCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1494 FVEVQALLLCPVCPHVAEHVYQLLGK-----KGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVK 1557 (1618)
Q Consensus 1494 ~l~~~~~llaPi~P~~aEeiw~~l~~-----~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~ 1557 (1618)
+|..+++|||||+||+||++|+.|+. .+|||++.||+++. +|+.+++.++.+++++..+|+.+.
T Consensus 776 vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~ 846 (1159)
T PLN02882 776 VLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRE 846 (1159)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999963 57999999999763 488899999999998888888776
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-117 Score=1176.75 Aligned_cols=809 Identities=21% Similarity=0.275 Sum_probs=592.8
Q ss_pred ccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCC
Q psy5309 6 TFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSS 85 (1618)
Q Consensus 6 ~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1618)
+-|+.++.++|++||++|+++++|++..+.+ .
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~------------------------------------------------~ 33 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLN------------------------------------------------K 33 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhcc------------------------------------------------C
Confidence 3466788999999999999999999866421 2
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
++++|++++|||||||.||||||+|++++|+++||+||+||+|++++||||||+|||..|+|. +|+...
T Consensus 34 ~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~------l~~~~~----- 102 (861)
T TIGR00392 34 GKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKK------LGISGK----- 102 (861)
T ss_pred CCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHH------hCcccc-----
Confidence 368899999999999999999999999999999999999999999999999999999999862 233210
Q ss_pred CCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccccc
Q psy5309 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWR 245 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~ 245 (1618)
.++ ...| .+++++. |++|+.++++.|+++|++||+++||+
T Consensus 103 -----------------------~~~-------------~~~~--~~~f~~~--c~~~~~~~~~~~~~~~~~lG~~~dw~ 142 (861)
T TIGR00392 103 -----------------------KEI-------------SSLE--IEEFREK--CREFALKQIEEQREQFQRLGVWGDWE 142 (861)
T ss_pred -----------------------ccc-------------chhh--HHHHHHH--HHHHHHHHHHHHHHHHHHhCceecCC
Confidence 000 0001 2233333 57999999999999999999999999
Q ss_pred CceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCC----CCCCeeEEEEEEeeccCCccc
Q psy5309 246 RTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGE----GVGPQEYTLIKMRLVKPYPAK 321 (1618)
Q Consensus 246 ~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~----~~~~~~y~~~~~~~~~~~~~~ 321 (1618)
++|.|+| |.|.++++|+|.+|+++|+||+|.+||+|||.|+|+|||+||++++ +.+++.|+.|++ .++-...
T Consensus 143 ~~y~T~~--p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~--~~~~~~~ 218 (861)
T TIGR00392 143 NPYKTMD--PSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPV--KKDKKTY 218 (861)
T ss_pred CCcCcCC--HHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEe--cCCcccc
Confidence 9999999 8999999999999999999999999999999999999999999987 788888766554 2110000
Q ss_pred cccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCC
Q psy5309 322 LCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATG 401 (1618)
Q Consensus 322 ~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~ 401 (1618)
......+|+|||||||||+||+||||||+++|+.+..-...+.+|++...... +.+.
T Consensus 219 ---~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~-~~~~------------------- 275 (861)
T TIGR00392 219 ---LKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEK-LYNK------------------- 275 (861)
T ss_pred ---cccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHH-HHHh-------------------
Confidence 00111289999999999999999999999999998541112355555442111 0000
Q ss_pred cEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhh
Q psy5309 402 EVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRR 481 (1618)
Q Consensus 402 ~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~ 481 (1618)
.+. ..+++.+++|..+. |..+.++++.. .. ..
T Consensus 276 ---------------~~~-----~~~~~~~~~G~~l~--g~~~~~P~~~~---~~------------------~~----- 307 (861)
T TIGR00392 276 ---------------AGS-----DYEIIKTFKGSDLE--GLEYEHPLYDF---VS------------------QL----- 307 (861)
T ss_pred ---------------cCC-----ceEEEeeecchhhC--CCEEECCCCcc---cc------------------cc-----
Confidence 000 02345566666666 77776665410 00 00
Q ss_pred hHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeee
Q psy5309 482 NFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVF 561 (1618)
Q Consensus 482 ~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~ 561 (1618)
....| +++++ ++|+++.|||+|
T Consensus 308 --------------------~~~~p-------------------~v~~~--------------~~V~~~~GTG~V----- 329 (861)
T TIGR00392 308 --------------------KEGAP-------------------VVIGG--------------DHVTTEDGTGIV----- 329 (861)
T ss_pred --------------------ccCCc-------------------EEeCC--------------CCCCCCCCCcee-----
Confidence 00013 23443 789999999999
Q ss_pred ccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCC
Q psy5309 562 FKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGN 641 (1618)
Q Consensus 562 ~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1618)
|+ +|+|+ |+||.++.+ | |+
T Consensus 330 -~~--------~Pah~------------~~D~~~~~~----------~------------------------------~l 348 (861)
T TIGR00392 330 -HT--------APGHG------------EEDYEIGKK----------Y------------------------------GL 348 (861)
T ss_pred -Ec--------CCCCC------------HHHHHHHHH----------c------------------------------CC
Confidence 99 99999 999998766 4 33
Q ss_pred cccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHH
Q psy5309 642 ALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVK 721 (1618)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~ 721 (1618)
+. +..+++.|.+... .+++.|.+ .+|+|+.+++||
T Consensus 349 ~~-----------------~~~vd~~g~~~~~--------------------------~~~~~g~~--~~~~g~~~~~a~ 383 (861)
T TIGR00392 349 EV-----------------LSPVDEKGVYTEG--------------------------VNDFQGRF--VKDADKDIIKAN 383 (861)
T ss_pred Cc-----------------ccccCCCceECCc--------------------------Cccccccc--cccCCccHHHhH
Confidence 21 1112333433110 01233432 268999999999
Q ss_pred HHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe--
Q psy5309 722 KLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-- 799 (1618)
Q Consensus 722 ~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-- 799 (1618)
++|+++|++.|++ ++.+++.|+||||||+
T Consensus 384 ~~ii~~L~~~g~l-------------------------------------------------~~~~~~~h~~p~~~R~~~ 414 (861)
T TIGR00392 384 KIIIEQLKDKGLL-------------------------------------------------LKAEKITHSYPHCWRTKT 414 (861)
T ss_pred HHHHHHHHhCCCe-------------------------------------------------eeeeeEecCCCccCCCCC
Confidence 9999999999965 5678899999999998
Q ss_pred -----ccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceE
Q psy5309 800 -----LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 800 -----~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
+++||||++ ++||+++++++++|+|+|+++++++.+||++++||||||||+||||||+ |+|++|++.
T Consensus 415 ~v~~~~~~QWFi~~--~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~---~~~~~~~~~--- 486 (861)
T TIGR00392 415 PVIYRATEQWFIKT--KDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPI---WYCEDTGEP--- 486 (861)
T ss_pred EEEEecCccccEEc--HHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeE---EEECCCCCC---
Confidence 799999999 7999999999999999999999999999999999999999999999999 999998765
Q ss_pred eehhHHHHHhhcCccCCCCC----------ccCCC-----CcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhcc
Q psy5309 875 MAYYTVAHLLQGGTFRGENG----------NALNI-----KAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQY 939 (1618)
Q Consensus 875 ~~~~ti~~~l~~~~~~g~~~----------~~l~~-----~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1618)
+++++++++++...-.|.+. ..... ......++++|+||+++..+....+.+.+ .+.|++
T Consensus 487 ~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~-----~~~f~~ 561 (861)
T TIGR00392 487 IVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFE-----NEKFKE 561 (861)
T ss_pred cCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCC-----cchhhc
Confidence 78888888874110112110 00000 12334688999999998644322222222 135889
Q ss_pred ccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhh
Q psy5309 940 WYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIY 1019 (1618)
Q Consensus 940 w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~ 1019 (1618)
|||+|++++|+||+||| ||..+|
T Consensus 562 ~~P~d~~i~G~Di~r~W------f~~~~~--------------------------------------------------- 584 (861)
T TIGR00392 562 VFPADFILEGSDQTRGW------FYSSLA--------------------------------------------------- 584 (861)
T ss_pred cCCceEEEEecchhccH------HHHHHH---------------------------------------------------
Confidence 99999999999999983 222221
Q ss_pred hhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhH
Q psy5309 1020 IHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRL 1099 (1618)
Q Consensus 1020 ~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl 1099 (1618)
+ +
T Consensus 585 ------~---------------------------------------------------~--------------------- 586 (861)
T TIGR00392 585 ------I---------------------------------------------------G--------------------- 586 (861)
T ss_pred ------H---------------------------------------------------H---------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchH
Q psy5309 1100 YTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHR 1179 (1618)
Q Consensus 1100 ~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~ 1179 (1618)
++
T Consensus 587 ---------~~--------------------------------------------------------------------- 588 (861)
T TIGR00392 587 ---------TA--------------------------------------------------------------------- 588 (861)
T ss_pred ---------HH---------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCC
Q psy5309 1180 TLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGN 1258 (1618)
Q Consensus 1180 ~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGN 1258 (1618)
. .+..||+.+++||||++ +|+|||||+||
T Consensus 589 ---------------------------------------------~-----~~~~P~k~v~~hG~vl~~~G~KMSKSkGN 618 (861)
T TIGR00392 589 ---------------------------------------------L-----FGQAPYKNVITHGFTLDEKGRKMSKSLGN 618 (861)
T ss_pred ---------------------------------------------H-----cCCCChHhhEecceEECCCCCCcCCCCCC
Confidence 0 01246899999999999 99999999999
Q ss_pred cCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhH
Q psy5309 1259 FLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTF 1338 (1618)
Q Consensus 1259 vI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~ 1338 (1618)
||+|.++|++||||++|||++++ +.++|++||++.++...+.+.+. + +|.++|+....+
T Consensus 619 vI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~-----l------~N~~~~~~~~~~--------- 677 (861)
T TIGR00392 619 VVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKI-----R------WNTYRFLLTYAN--------- 677 (861)
T ss_pred CCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHH-----H------HHHHHHHHHHhc---------
Confidence 99999999999999999999999 99999999999887654433221 1 011222210000
Q ss_pred HHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcccchhH
Q psy5309 1339 IEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGGMHRT 1416 (1618)
Q Consensus 1339 ~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~~~~~ 1416 (1618)
+ ..+++....++...+...|+|++++++.+++++.++|++|+|++|++.++ +|+. ++|+|++.++
T Consensus 678 ---l-~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~-~f~~~~l~n~Yi~~~k-------- 744 (861)
T TIGR00392 678 ---L-DKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQ-DFIVEELSNWYIRIIR-------- 744 (861)
T ss_pred ---c-ccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHHHHHHHhh--------
Confidence 0 01111101111223456899999999999999999999999999999985 8875 6999996664
Q ss_pred HHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHH
Q psy5309 1417 LVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVE 1496 (1618)
Q Consensus 1417 ~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 1496 (1618)
+|+|....+.+++ .++++|+.+++
T Consensus 745 -----------------------------------------------~~lw~~~~~~~~~---------~~~~~l~~~l~ 768 (861)
T TIGR00392 745 -----------------------------------------------DRLYCEAKDNDKR---------AAQTTLYYALL 768 (861)
T ss_pred -----------------------------------------------HHhccCCCCHHHH---------HHHHHHHHHHH
Confidence 4445433222111 35677889999
Q ss_pred HHHHHhccchhhHHHHHHHHcCC---CCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccc
Q psy5309 1497 VQALLLCPVCPHVAEHVYQLLGK---KGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKNH---ILTASKKK 1567 (1618)
Q Consensus 1497 ~~~~llaPi~P~~aEeiw~~l~~---~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~~---~e~~r~~k 1567 (1618)
.+++||+||+||+|||+|+.|+. ++||+.+.||+.+. +|+.++++++.+++++.++|+.+.+. ++..++++
T Consensus 769 ~l~~lL~P~~P~~aeeiw~~L~~~~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~~~~~ 847 (861)
T TIGR00392 769 TLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQPLKEL 847 (861)
T ss_pred HHHHHHHHhhhhhHHHHHHhccccCCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHhChhhhhHhhcC
Confidence 99999999999999999999964 47999999999874 48888888888777666666655544 44444444
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-113 Score=1136.03 Aligned_cols=703 Identities=19% Similarity=0.259 Sum_probs=532.3
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+|+|..+++... ...|..
T Consensus 126 ~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~--~~~~~~------- 196 (1066)
T PLN02381 126 SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLM--RERHLT------- 196 (1066)
T ss_pred CCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhH--hhcCCC-------
Confidence 36789999999999999999999999999999999999999999999999999999999876210 011211
Q ss_pred CCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccccc
Q psy5309 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWR 245 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~ 245 (1618)
+. .++.+++.+. |++|++++.+.|+++|++||+++||+
T Consensus 197 ----------------------~~------------------~~~re~f~~~--~~~~~~~~~~~~~~q~~~lG~s~Dw~ 234 (1066)
T PLN02381 197 ----------------------RH------------------DIGREEFVSE--VWKWKDEYGGTILNQLRRLGASLDWS 234 (1066)
T ss_pred ----------------------hh------------------hCCHHHHHHH--HHHHHHHHHHHHHHHHHHhCchhccC
Confidence 10 1233333333 68999999999999999999999999
Q ss_pred CceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeE------------EEEEEe
Q psy5309 246 RTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEY------------TLIKMR 313 (1618)
Q Consensus 246 ~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y------------~~~~~~ 313 (1618)
++|+|+| |.|.++|+|+|.+|+++|+||+|.+||+|||.|+|+|||+||+|.+..+++.| ..+.|+
T Consensus 235 ~~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~ 312 (1066)
T PLN02381 235 RECFTMD--EQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFA 312 (1066)
T ss_pred CccccCC--HHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEE
Confidence 9999999 78999999999999999999999999999999999999999999887766643 122221
Q ss_pred eccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCCC
Q psy5309 314 LVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMA 392 (1618)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~ 392 (1618)
|+.. +++.+|+|||||||||+|++||||||++ +|..+ .|
T Consensus 313 ----Y~l~-----~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L---~G---------------------------- 352 (1066)
T PLN02381 313 ----YPLE-----GGLGEIVVATTRIETMLGDTAIAIHPDDERYKHL---HG---------------------------- 352 (1066)
T ss_pred ----EEec-----CCCCEEEEecCCHHHHhcccceeeCCCCcchhhh---CC----------------------------
Confidence 2221 2235899999999999999999999997 44433 12
Q ss_pred eeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccc
Q psy5309 393 YIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANM 472 (1618)
Q Consensus 393 y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~ 472 (1618)
..+.++++
T Consensus 353 -------------------------------------------------~~~~~Pl~----------------------- 360 (1066)
T PLN02381 353 -------------------------------------------------KFAVHPFN----------------------- 360 (1066)
T ss_pred -------------------------------------------------CEEECCCC-----------------------
Confidence 11222211
Q ss_pred cccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCC
Q psy5309 473 NTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDL 552 (1618)
Q Consensus 473 ~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~g 552 (1618)
|..+| ++++ ..+|+++.|
T Consensus 361 -----------------------------~~~ip--------------------Ii~d-------------~~~Vd~e~G 378 (1066)
T PLN02381 361 -----------------------------GRKLP--------------------IICD-------------AILVDPNFG 378 (1066)
T ss_pred -----------------------------CCEEE--------------------EEEC-------------CccccccCC
Confidence 11255 4432 147999999
Q ss_pred CcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccC
Q psy5309 553 TPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQG 632 (1618)
Q Consensus 553 tg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1618)
||+| |+ +|+|+ |.||.++.+ |
T Consensus 379 TG~V------~i--------~PaHd------------~~Dy~~~~~----------~----------------------- 399 (1066)
T PLN02381 379 TGAV------KI--------TPAHD------------PNDFEVGKR----------H----------------------- 399 (1066)
T ss_pred CCcE------Ee--------cCCCC------------hHHHHHHHH----------c-----------------------
Confidence 9999 99 99999 999998765 3
Q ss_pred CccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ec
Q psy5309 633 GTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VG 710 (1618)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~ 710 (1618)
|++ .+.+|+ .+|+|+ +|
T Consensus 400 -------~L~---------------~i~~id---------------------------------------~~G~~~~~~~ 418 (1066)
T PLN02381 400 -------NLE---------------FINIFT---------------------------------------DDGKINSNGG 418 (1066)
T ss_pred -------CCC---------------eeeeeC---------------------------------------CCceeCCCCc
Confidence 331 222332 257776 24
Q ss_pred -ccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccc
Q psy5309 711 -EFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKY 789 (1618)
Q Consensus 711 -~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~ 789 (1618)
+|+|+.+++||++|+++|++.|++ ++.++|
T Consensus 419 ~~~~Gl~~~eAr~~Ii~~L~~~g~l-------------------------------------------------~~~~~~ 449 (1066)
T PLN02381 419 SEFAGMPRFAAREAVIEALQKKGLY-------------------------------------------------RGAKNN 449 (1066)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCE-------------------------------------------------ecceee
Confidence 799999999999999999999975 566889
Q ss_pred cccCCeEEEe-------ccCcceeecCCchHHHHHHHHH-----hcccccChHHHHHHHHhhcCcCceeecccCCCCccc
Q psy5309 790 HVTDEMCVVA-------LCDQWYLDYGEPTWKAAAEQCL-----ANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKL 857 (1618)
Q Consensus 790 ~H~y~~c~~~-------~~~QWfi~~~~~~~k~~~~~~i-----~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PI 857 (1618)
.|+||||||+ +++||||++ +.+++++++++ ++|+|+|+++++++.+||++++||||||||+|||||
T Consensus 450 ~h~~p~c~R~~~~ie~~~~~QWFi~~--~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pI 527 (1066)
T PLN02381 450 EMRLGLCSRTNDVVEPMIKPQWFVNC--SSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRI 527 (1066)
T ss_pred ecCCCeeCCCCceEEEeecccceEEc--hHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCcc
Confidence 9999999998 799999999 68999999999 789999999999999999999999999999999999
Q ss_pred CCCccccccccCCc-----c----eEeehhHHHHHhhcCccCCCCCccCCCC--cCCCCCcceeEEecccCCCCCCCCCC
Q psy5309 858 PWDEQWLIESLSDS-----T----IYMAYYTVAHLLQGGTFRGENGNALNIK--AEDLTPEVWDYVFFKAAPFPPKCRVP 926 (1618)
Q Consensus 858 P~d~~w~~e~~~D~-----~----iy~~~~ti~~~l~~~~~~g~~~~~l~~~--~~~l~~~~~d~~f~~~~~~~~~~~~~ 926 (1618)
|+ |+|+ ++|+ + .++.-......+.. ... ..... .....+|++|+||+|+..+....+.|
T Consensus 528 Pi---w~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P 597 (1066)
T PLN02381 528 PA---WYVT-LEDDQLKELGSYNDHWVVARNESDALLE---ASQ---KFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWP 597 (1066)
T ss_pred ce---EEec-cChhhcccCCcccceEEEccchHhhcch---hhc---ccCCCccceeecCceeeEEEeCCchHHHHhcCC
Confidence 99 9995 2221 1 11111111111110 000 00001 13467899999999987443233334
Q ss_pred hhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcc
Q psy5309 927 KAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLF 1006 (1618)
Q Consensus 927 ~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~ 1006 (1618)
.+ .+.|++|||+|++++|.||+++ |
T Consensus 598 ~~-----~~~~~~~~P~d~~~~G~Dii~~------------W-------------------------------------- 622 (1066)
T PLN02381 598 DD-----TDDLKAFYPTSVLETGHDILFF------------W-------------------------------------- 622 (1066)
T ss_pred CC-----HHHHhccCCCeeeeecchhhhh------------H--------------------------------------
Confidence 32 3468899999999998887766 3
Q ss_pred cccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCccccccc
Q psy5309 1007 SDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDAN 1086 (1618)
Q Consensus 1007 ~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~ 1086 (1618)
+++..
T Consensus 623 --------------------------------------------------------------------~~rmi------- 627 (1066)
T PLN02381 623 --------------------------------------------------------------------VARMV------- 627 (1066)
T ss_pred --------------------------------------------------------------------HHHHH-------
Confidence 00000
Q ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q psy5309 1087 FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDK 1166 (1618)
Q Consensus 1087 fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~ 1166 (1618)
+.++
T Consensus 628 -------------------~~~~--------------------------------------------------------- 631 (1066)
T PLN02381 628 -------------------MMGM--------------------------------------------------------- 631 (1066)
T ss_pred -------------------HHHH---------------------------------------------------------
Confidence 0000
Q ss_pred HHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceecccccc
Q psy5309 1167 YRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL 1246 (1618)
Q Consensus 1167 Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvl 1246 (1618)
+ ..+..|++.|++||||+
T Consensus 632 ---------------------------------------------------------~-----~~~~~PFk~v~~hG~V~ 649 (1066)
T PLN02381 632 ---------------------------------------------------------Q-----LGGDVPFRKVYLHPMIR 649 (1066)
T ss_pred ---------------------------------------------------------H-----hCCCCchHHheecceEE
Confidence 0 01346789999999999
Q ss_pred c-cccccccccCCcCCHHHHHH-------------------------------------hcCcceeeeehhccCCCCcCc
Q psy5309 1247 L-NSAKMSKSEGNFLTLTEAVK-------------------------------------KFSADGMRLCLADSGDSVEDA 1288 (1618)
Q Consensus 1247 d-~G~KMSKSlGNvI~P~~ii~-------------------------------------~yGaD~lRl~l~~~~~~~~D~ 1288 (1618)
| +|+|||||+||||||.++|+ +||||+|||||+++++.++|+
T Consensus 650 D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di 729 (1066)
T PLN02381 650 DAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKI 729 (1066)
T ss_pred CCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCcccccc
Confidence 9 99999999999999999999 799999999999998899999
Q ss_pred ccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcc-cc--cCCCCCCCcchHHH
Q psy5309 1289 NFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQ-ST--LRTGSQDSFNDKVF 1365 (1618)
Q Consensus 1289 ~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~D~~i 1365 (1618)
+|+.+.+....+..|+. +|+.+|+...+++. .+ ......+..+|+||
T Consensus 730 ~~~~~~v~~~r~f~nKl------------------------------wNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWI 779 (1066)
T PLN02381 730 NLDILRVVGYRQWCNKL------------------------------WNAVRFAMSKLGDDYTPPATLSVETMPFSCKWI 779 (1066)
T ss_pred CccHHHHHHHHHHHHHH------------------------------HHHHHHHHhhcccccCcccccCccccCHHHHHH
Confidence 99999887655444433 22222222111110 00 01122345689999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHH
Q psy5309 1366 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMN 1443 (1618)
Q Consensus 1366 l~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~ 1443 (1618)
+++++.++++++++|++|+|+.|+++++ +|+ .++|+|++.++
T Consensus 780 LskL~~~i~~v~~~~e~y~F~~A~~~l~-~F~~~dl~d~Yie~~K----------------------------------- 823 (1066)
T PLN02381 780 LSVLNKAISKTVSSLDAYEFSDAASTVY-SWWQYQFCDVFIEAIK----------------------------------- 823 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhHHHHHHHhH-----------------------------------
Confidence 9999999999999999999999999985 885 48888887666
Q ss_pred hcccccchhhhhhhhhhhhhhhhhhhhh--hhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCC--
Q psy5309 1444 LKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK-- 1519 (1618)
Q Consensus 1444 L~~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~-- 1519 (1618)
++++.... +.+++ .++++|.++|+.+++||||||||+|||+|+.|+.
T Consensus 824 --------------------~~l~~~~~~~~~~r~---------~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~ 874 (1066)
T PLN02381 824 --------------------PYFAGDNPEFASERA---------AAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPK 874 (1066)
T ss_pred --------------------HHHccCCccccHHHH---------HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhc
Confidence 33332110 11111 4677899999999999999999999999998852
Q ss_pred ----CCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1520 ----KGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKNH 1559 (1618)
Q Consensus 1520 ----~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~~ 1559 (1618)
.+||+.+.||++++ +|+.+++.++.+++++.++|+.+.+.
T Consensus 875 ~~~~~~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~ 920 (1066)
T PLN02381 875 DHTRKDSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEV 920 (1066)
T ss_pred cCCCCCeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46999999999873 48899999999999999999998875
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-112 Score=1127.65 Aligned_cols=709 Identities=23% Similarity=0.321 Sum_probs=556.2
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|.-.+.++|++||++|+++++|+.+++. +
T Consensus 7 ~~y~~~~~E~~~~~~W~~~~~f~~~~~~---------------------------------------------------~ 35 (874)
T PRK05729 7 KTYDPKEVEAKWYQKWEEKGYFKPDDNS---------------------------------------------------K 35 (874)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCcCC---------------------------------------------------C
Confidence 4445688999999999999999885532 3
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+|+|..+++. +...|++
T Consensus 36 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~---l~~~g~~--------- 103 (874)
T PRK05729 36 KPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQ---LAAEGKS--------- 103 (874)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHH---HHhcCCC---------
Confidence 4599999999999999999999999999999999999999999999999999999988753 2222332
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+. ++ +.+++.+- |++|++++.+.|+++|++||+++||+++
T Consensus 104 --------------------~~----------------~~--~re~f~~~--~~~w~~~~~~~~~~~~~~lG~s~Dw~r~ 143 (874)
T PRK05729 104 --------------------RH----------------DL--GREKFLEK--VWEWKEESGGTITNQLRRLGASCDWSRE 143 (874)
T ss_pred --------------------hH----------------HC--CHHHHHHH--HHHHHHHHHHHHHHHHHHhCcceecCCC
Confidence 11 12 23333333 5899999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCC
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDS 327 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 327 (1618)
|+|+| |.|.++|+|+|.+|+++|+||+|.++|+|||.|+|+|||+||++.+..++..| ++|++. +
T Consensus 144 ~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~--i~f~~~-----------~ 208 (874)
T PRK05729 144 RFTMD--EGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWH--IRYPLA-----------D 208 (874)
T ss_pred cccCC--HHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccccccceEEE--EEEEec-----------C
Confidence 99999 77999999999999999999999999999999999999999999887665544 555442 2
Q ss_pred CCcEEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEe
Q psy5309 328 KPVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVC 406 (1618)
Q Consensus 328 ~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~ 406 (1618)
++.+|+|||||||||+||+||||||++ +|..+ .|+
T Consensus 209 ~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l---~g~----------------------------------------- 244 (874)
T PRK05729 209 GSDYLVVATTRPETMLGDTAVAVNPEDERYKHL---IGK----------------------------------------- 244 (874)
T ss_pred CCcEEEEEeCCcchhhcCeeEeECCCccHHHHh---cCC-----------------------------------------
Confidence 356999999999999999999999997 44332 121
Q ss_pred ccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhh
Q psy5309 407 TERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGAS 486 (1618)
Q Consensus 407 ~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~ 486 (1618)
.+..+++
T Consensus 245 ------------------------------------~~~~P~~------------------------------------- 251 (874)
T PRK05729 245 ------------------------------------TVILPLV------------------------------------- 251 (874)
T ss_pred ------------------------------------EEECCCC-------------------------------------
Confidence 1111111
Q ss_pred hhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCC
Q psy5309 487 LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAP 566 (1618)
Q Consensus 487 ~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~ 566 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 252 ---------------~~~ip--------------------ii~~--------------~~V~~~~GTG~V------~~-- 274 (874)
T PRK05729 252 ---------------GREIP--------------------IIAD--------------EYVDPEFGTGAV------KI-- 274 (874)
T ss_pred ---------------CCeee--------------------EecC--------------ccCCCCCCCcce------Ee--
Confidence 12255 5554 789999999999 99
Q ss_pred CCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCccccc
Q psy5309 567 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIN 646 (1618)
Q Consensus 567 ~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1618)
+|+|+ |.||.++.+ + |+
T Consensus 275 ------~Pah~------------~~D~~~~~~----------~------------------------------~l----- 291 (874)
T PRK05729 275 ------TPAHD------------PNDFEVGKR----------H------------------------------NL----- 291 (874)
T ss_pred ------cCCCC------------HHHHHHHHH----------c------------------------------CC-----
Confidence 99999 999998766 3 32
Q ss_pred ceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHHH
Q psy5309 647 CVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKLL 724 (1618)
Q Consensus 647 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~i 724 (1618)
+++++|+ .+|+|+ +|+|+|+.+++||++|
T Consensus 292 ----------~~~~~i~---------------------------------------~~G~~~~~~~~~~G~~~~~ar~~i 322 (874)
T PRK05729 292 ----------PMINIMD---------------------------------------EDGTINENPGEYQGLDRFEARKAI 322 (874)
T ss_pred ----------CcccccC---------------------------------------CCCeEcCCCcccCCCCHHHHHHHH
Confidence 2233442 157776 6899999999999999
Q ss_pred HHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-----
Q psy5309 725 QKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA----- 799 (1618)
Q Consensus 725 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~----- 799 (1618)
++.|++.|++ ++.+++.|+||+|||+
T Consensus 323 ~~~L~~~g~l-------------------------------------------------~~~~~~~~~~p~~~R~~~~i~ 353 (874)
T PRK05729 323 VADLEELGLL-------------------------------------------------VKIEPHTHSVGHSDRSGVVIE 353 (874)
T ss_pred HHHHHhCCCe-------------------------------------------------eeeEEeeccCCeeCCCCceEE
Confidence 9999999965 4567889999999997
Q ss_pred --ccCcceeecCCchHHHHHHHHHh--cccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEe
Q psy5309 800 --LCDQWYLDYGEPTWKAAAEQCLA--NMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYM 875 (1618)
Q Consensus 800 --~~~QWfi~~~~~~~k~~~~~~i~--~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~ 875 (1618)
+++|||+++ ++|+++++++++ +++|+|+.+++++.+||++++||||||||+||||||+ |+|++ +++||
T Consensus 354 ~~~~~QWFi~~--~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~---~~~~~---~~~~v 425 (874)
T PRK05729 354 PYLSDQWFVKM--KPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPA---WYDED---GEVYV 425 (874)
T ss_pred EEecCcceEeh--HHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccE---EEeCC---CcEEe
Confidence 799999999 699999999996 6999999999999999999999999999999999999 99974 57999
Q ss_pred ehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeeccccccc
Q psy5309 876 AYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQN 955 (1618)
Q Consensus 876 ~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~ 955 (1618)
+.++..... . ..-...+|++|+||+|+..+-...+.+.+ ++.|++|||+|++++|+|++++
T Consensus 426 ~~~~~~~~~--------~------~~~~~~~DvlDtWfsS~l~~~~~lgwp~~-----~~~~~~~~P~d~~~~G~Dii~~ 486 (874)
T PRK05729 426 GREEPEARE--------K------ALLTQDEDVLDTWFSSALWPFSTLGWPEK-----TEDLKRFYPTSVLVTGFDIIFF 486 (874)
T ss_pred CCccccccc--------c------cCeEeCCceecceecCCccHHHHhCCCCC-----cHHHHhcCCcccccccccccch
Confidence 887521100 0 01233578999999987532112222221 3568899999999999998776
Q ss_pred chhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcE
Q psy5309 956 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRG 1035 (1618)
Q Consensus 956 Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~ 1035 (1618)
|..+. ++
T Consensus 487 W~a~~-----------------------------------------~~-------------------------------- 493 (874)
T PRK05729 487 WVARM-----------------------------------------IM-------------------------------- 493 (874)
T ss_pred HHHHH-----------------------------------------HH--------------------------------
Confidence 21000 00
Q ss_pred EEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhccc
Q psy5309 1036 IRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQST 1115 (1618)
Q Consensus 1036 v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~ 1115 (1618)
+ + .
T Consensus 494 ----------------------------------------~-~------------------------------~------ 496 (874)
T PRK05729 494 ----------------------------------------M-G------------------------------L------ 496 (874)
T ss_pred ----------------------------------------H-H------------------------------H------
Confidence 0 0 0
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCc
Q psy5309 1116 LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCP 1195 (1618)
Q Consensus 1116 ~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP 1195 (1618)
.
T Consensus 497 --------------------------------------~----------------------------------------- 497 (874)
T PRK05729 497 --------------------------------------H----------------------------------------- 497 (874)
T ss_pred --------------------------------------H-----------------------------------------
Confidence 0
Q ss_pred CCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCccee
Q psy5309 1196 VCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGM 1274 (1618)
Q Consensus 1196 ~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~l 1274 (1618)
. .+..|++.|.+||+|+| +|+|||||+||||+|.++|++||||+|
T Consensus 498 -----------------------------~-----~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDal 543 (874)
T PRK05729 498 -----------------------------F-----TGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADAL 543 (874)
T ss_pred -----------------------------h-----cCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHH
Confidence 0 02245799999999999 999999999999999999999999999
Q ss_pred eeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcc--ccc
Q psy5309 1275 RLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQ--STL 1352 (1618)
Q Consensus 1275 Rl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 1352 (1618)
||||++.++.++|++||++.+++..+.+|+. +|..+|+....+.. ...
T Consensus 544 R~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl------------------------------~N~~Rf~~~~~~~~~~~~~ 593 (874)
T PRK05729 544 RFTLAALASPGRDIRFDEERVEGYRNFANKL------------------------------WNASRFVLMNLEGADVGEL 593 (874)
T ss_pred HHHHHhCCCCCCCceeCHHHHHHHHHHHHHH------------------------------HHHHHHHHHhcccCCcccc
Confidence 9999999899999999999887755544432 12222221111100 011
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhc
Q psy5309 1353 RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLC 1430 (1618)
Q Consensus 1353 ~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~ 1430 (1618)
+....+...|+|++++++.+++++.++|++|+|+.|+++++ +|+ .++|+|++.+++
T Consensus 594 ~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~-~f~~~~~~~~Yle~~k~--------------------- 651 (874)
T PRK05729 594 PDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALY-EFIWNEFCDWYLELAKP--------------------- 651 (874)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHHHHH---------------------
Confidence 11233567899999999999999999999999999999985 997 499999987763
Q ss_pred CcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHH
Q psy5309 1431 PVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVA 1510 (1618)
Q Consensus 1431 P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~a 1510 (1618)
+++ .. .+ ..++.+|.++|+.+++|||||+||+|
T Consensus 652 ----------------------------------~l~-~~---~~---------~~~~~~l~~~l~~~~~lL~Pf~Pfit 684 (874)
T PRK05729 652 ----------------------------------VLQ-EA---AK---------RATRATLAYVLEQILRLLHPFMPFIT 684 (874)
T ss_pred ----------------------------------Hhh-hh---HH---------HHHHHHHHHHHHHHHHHHcccchhhH
Confidence 222 00 01 14667889999999999999999999
Q ss_pred HHHHHHcCCC---CceEeccCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1511 EHVYQLLGKK---GSIVKARWPEGGPI-DDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1511 Eeiw~~l~~~---~sv~~~~~p~~~~~-~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
||+|+.|+.. +||+.+.||+.+.. |+.+++.++.+++++.++|+.+.+
T Consensus 685 Eelw~~l~~~~~~~si~~~~~P~~~~~~~~~~~~~~~~~~~ii~~ir~~r~~ 736 (874)
T PRK05729 685 EELWQKLAPLGIEESIMLAPWPEADEAIDEAAEAEFEWLKELITAIRNIRAE 736 (874)
T ss_pred HHHHHhcccCCCCCceeecCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999743 48999999997744 788899999999999999988764
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-112 Score=1126.01 Aligned_cols=720 Identities=23% Similarity=0.316 Sum_probs=564.5
Q ss_pred hhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCC
Q psy5309 9 VEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDD 88 (1618)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1618)
.-.+.++|++||++|+++++|+++++. +++
T Consensus 4 ~y~~~~iE~~~~~~W~~~~~f~~~~~~--------------------------------------------------~~~ 33 (861)
T TIGR00422 4 DYDPHEVEKKWYKKWEKSGFFKPDGNS--------------------------------------------------NKP 33 (861)
T ss_pred CCCHHHHHHHHHHHHHHCCCcccCccc--------------------------------------------------CCC
Confidence 345689999999999999999887642 257
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+|+|+.||||+||.||||||++++++|+++||+||+|++|+|++||||||+|||..+++... ..|.
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~---~~g~----------- 99 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLG---AEGK----------- 99 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhc---ccCC-----------
Confidence 89999999999999999999999999999999999999999999999999999999987421 1111
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCce
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTF 248 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~ 248 (1618)
+.. .++.+++.+. |++|++++...++++|++||+++||+++|
T Consensus 100 ------------------~~~------------------~~~~e~f~~~--~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~ 141 (861)
T TIGR00422 100 ------------------TKH------------------DLGREEFREK--IWEWKEESGGTIKNQIKRLGASLDWSRER 141 (861)
T ss_pred ------------------chh------------------hCCHHHHHHH--HHHHHHHHHHHHHHHHHHhCeeeecCCCc
Confidence 110 1233444433 58999999999999999999999999999
Q ss_pred eecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCC
Q psy5309 249 ITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSK 328 (1618)
Q Consensus 249 ~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 328 (1618)
+|+| |.|.++|+|+|.+|+++|+||+|.++|+|||+|+|+|||+||++++..++..|..++ +. +++
T Consensus 142 ~T~d--~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~--~~----------~~~ 207 (861)
T TIGR00422 142 FTMD--EGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYP--LA----------NGS 207 (861)
T ss_pred CcCC--HHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEE--ec----------CCC
Confidence 9999 779999999999999999999999999999999999999999999888877765444 32 122
Q ss_pred CcEEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEec
Q psy5309 329 PVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCT 407 (1618)
Q Consensus 329 ~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~ 407 (1618)
+.+|+|||||||||+||+||||||++ +|..+ .|
T Consensus 208 ~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l---~g------------------------------------------- 241 (861)
T TIGR00422 208 KDYLVVATTRPETMFGDTAVAVHPEDERYKHL---IG------------------------------------------- 241 (861)
T ss_pred CCEEEEEeCCcchhhhCeEEEECCCchHHHHh---cC-------------------------------------------
Confidence 36999999999999999999999997 34322 12
Q ss_pred cccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhh
Q psy5309 408 ERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASL 487 (1618)
Q Consensus 408 ~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~ 487 (1618)
..+..+++
T Consensus 242 ----------------------------------~~~~~P~~-------------------------------------- 249 (861)
T TIGR00422 242 ----------------------------------KKVILPLT-------------------------------------- 249 (861)
T ss_pred ----------------------------------CEEEcCCC--------------------------------------
Confidence 22222222
Q ss_pred hccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCC
Q psy5309 488 NWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPF 567 (1618)
Q Consensus 488 ~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~ 567 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 250 --------------~~~ip--------------------ii~~--------------~~V~~~~GTG~V------~~--- 272 (861)
T TIGR00422 250 --------------GRKIP--------------------IIAD--------------EYVDMEFGTGAV------KV--- 272 (861)
T ss_pred --------------CCcce--------------------eeec--------------CCCCcccCCCce------Ee---
Confidence 22256 6654 789999999999 99
Q ss_pred CCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccc
Q psy5309 568 PPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINC 647 (1618)
Q Consensus 568 ~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1618)
+|+|+ |+||.++.+ | |+
T Consensus 273 -----~Pah~------------~~D~~~~~~----------~------------------------------~l------ 289 (861)
T TIGR00422 273 -----TPAHD------------FNDYEWGKR----------H------------------------------NL------ 289 (861)
T ss_pred -----cCCCC------------hHHHHHHHH----------c------------------------------CC------
Confidence 99999 999988765 3 33
Q ss_pred eeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHHHH
Q psy5309 648 VIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKLLQ 725 (1618)
Q Consensus 648 ~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~i~ 725 (1618)
+.+++|+ .+|+|+ +|+|+|+++++||++|+
T Consensus 290 ---------~~~~~id---------------------------------------~~G~~~~~~~~~~G~~~~~ar~~i~ 321 (861)
T TIGR00422 290 ---------EFINILD---------------------------------------EDGLLNENAGKYQGLTRFEARKKIV 321 (861)
T ss_pred ---------CccceeC---------------------------------------CCCeEcCCCcccCCcCHHHhHHHHH
Confidence 1233342 256665 78999999999999999
Q ss_pred HHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe------
Q psy5309 726 KKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA------ 799 (1618)
Q Consensus 726 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~------ 799 (1618)
++|++.|++ ++.+++.|+||+|||+
T Consensus 322 ~~L~~~g~l-------------------------------------------------~~~~~~~~~~p~~~R~g~~ve~ 352 (861)
T TIGR00422 322 EDLKEEGLL-------------------------------------------------VKIEPHTHNVGTCWRSGTVVEP 352 (861)
T ss_pred HHHHhCCCe-------------------------------------------------eeeeeeeccCCEeCCCCCEEEE
Confidence 999999975 4567788899999987
Q ss_pred -ccCcceeecCCchHHHHHHHHHh--cccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEee
Q psy5309 800 -LCDQWYLDYGEPTWKAAAEQCLA--NMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA 876 (1618)
Q Consensus 800 -~~~QWfi~~~~~~~k~~~~~~i~--~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~ 876 (1618)
+++|||+++ ++|++++++.++ +++|+|++.++++.+||++++||||||||+||||||+ |+|++| +++|+.
T Consensus 353 ~~~~qWFi~~--~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~---w~~~~~--~~~~v~ 425 (861)
T TIGR00422 353 LLSKQWFVKV--EKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPV---WYCKEC--GEVYVA 425 (861)
T ss_pred EecCcceEec--HHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceE---EEECCC--CcEEec
Confidence 799999999 799999999998 6999999999999999999999999999999999999 999864 578886
Q ss_pred hhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccc
Q psy5309 877 YYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNH 956 (1618)
Q Consensus 877 ~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~H 956 (1618)
.......... ..|.. ......++++|+||+++..+-...+.+.+ .+.|++|||+|++++|+|++++|
T Consensus 426 ~~~~~~~~~~--~~~~~------~~~~~~~dVlDtWFdS~l~~~s~~g~p~~-----~~~~~~~~P~d~~~~G~Dii~fw 492 (861)
T TIGR00422 426 KEEPLPDDKT--NTGPS------VELEQDTDVLDTWFSSSLWPFSTLGWPDE-----TKDLKKFYPTDLLVTGYDIIFFW 492 (861)
T ss_pred cchHHhhhhh--ccCCc------ccEEECCCcccceeccchHHHHHhCCCCC-----hHHHhhcCCcceeecchhhhhHH
Confidence 5543333221 01110 12234689999999987632212233322 24688999999999999998885
Q ss_pred hhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEE
Q psy5309 957 LTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGI 1036 (1618)
Q Consensus 957 l~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v 1036 (1618)
..+.+..+.+
T Consensus 493 ~~~~~~~~~~---------------------------------------------------------------------- 502 (861)
T TIGR00422 493 VARMIFRSLA---------------------------------------------------------------------- 502 (861)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 3221000000
Q ss_pred EEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccC
Q psy5309 1037 RANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTL 1116 (1618)
Q Consensus 1037 ~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~ 1116 (1618)
T Consensus 503 -------------------------------------------------------------------------------- 502 (861)
T TIGR00422 503 -------------------------------------------------------------------------------- 502 (861)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcC
Q psy5309 1117 RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPV 1196 (1618)
Q Consensus 1117 ~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~ 1196 (1618)
T Consensus 503 -------------------------------------------------------------------------------- 502 (861)
T TIGR00422 503 -------------------------------------------------------------------------------- 502 (861)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceee
Q psy5309 1197 CPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMR 1275 (1618)
Q Consensus 1197 ~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lR 1275 (1618)
+ .+..|++.+++|||++| +|+|||||+||+|+|.+++++||||++|
T Consensus 503 -----------~----------------------~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR 549 (861)
T TIGR00422 503 -----------L----------------------TGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALR 549 (861)
T ss_pred -----------h----------------------cCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHH
Confidence 0 01235699999999999 9999999999999999999999999999
Q ss_pred eehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCC-
Q psy5309 1276 LCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRT- 1354 (1618)
Q Consensus 1276 l~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1354 (1618)
|||++.++.++|++||++.+.+..+..|+. || ++|+..+ ..+.....+.
T Consensus 550 ~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl------------~N-~~rf~~~-----------------~~~~~~~~~~~ 599 (861)
T TIGR00422 550 FTLASLVTPGDDINFDWKRVESARNFLNKL------------WN-ASRFVLM-----------------NLSDDLELSGG 599 (861)
T ss_pred HHHHhCCCCCCCceecHHHHHHHHHHHHHH------------HH-HHHHHHh-----------------ccccccccccc
Confidence 999999888999999999877754444422 22 2222222 1111100111
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCc
Q psy5309 1355 GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPV 1432 (1618)
Q Consensus 1355 ~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~ 1432 (1618)
......+|+|++++++.+++++.++|++|+|+.|+++++ +|+ .++|+|++.+++
T Consensus 600 ~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~-~f~~~~~~n~Yie~~k~----------------------- 655 (861)
T TIGR00422 600 EEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALY-EFIWNDFCDWYIELVKY----------------------- 655 (861)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHHhHH-----------------------
Confidence 123456899999999999999999999999999999985 996 599999987764
Q ss_pred chhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHH
Q psy5309 1433 CPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEH 1512 (1618)
Q Consensus 1433 ~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEe 1512 (1618)
|++... +.++ ..++.+|.++|+.+++|||||+||+|||
T Consensus 656 --------------------------------~~~~~~-~~~~---------~~~~~~l~~~l~~~~~lL~Pf~P~itEe 693 (861)
T TIGR00422 656 --------------------------------RLYNGN-EAEK---------KAARDTLYYVLDKALRLLHPFMPFITEE 693 (861)
T ss_pred --------------------------------HHcCCC-cHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 222111 0111 1466788999999999999999999999
Q ss_pred HHHHcCC-CCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1513 VYQLLGK-KGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1513 iw~~l~~-~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
||+.|+. .+||+.+.||+.++ +|+.++++++.+++++.++|+.+.+
T Consensus 694 lw~~L~~~~~si~~~~~P~~~~~~~d~~~e~~~~~l~~ii~~iR~~r~~ 742 (861)
T TIGR00422 694 IWQHFKEGADSIMLQSYPVVDAEFVDEEAEKAFELLKEIIVSIRNLKAE 742 (861)
T ss_pred HHHhCcccCCceeecCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 47999999999874 4889999999999999999998765
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-112 Score=1133.55 Aligned_cols=739 Identities=20% Similarity=0.273 Sum_probs=557.2
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|.-.+.++|++||++|+++++|++...... +.++
T Consensus 26 ~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~----------------------------------------------~~~~ 59 (995)
T PTZ00419 26 ASYDPKEVESGWYEWWEKSGFFKPAEDAKS----------------------------------------------LNSG 59 (995)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccccc----------------------------------------------cCCC
Confidence 445668899999999999999987532100 1246
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+|++|||||||.||||||+|++++|+++||+||+|++|+|++||||||+|+|..+|+... ...|+.
T Consensus 60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~--~~~~~~--------- 128 (995)
T PTZ00419 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLM--KEENKT--------- 128 (995)
T ss_pred CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHH--HhcCCC---------
Confidence 789999999999999999999999999999999999999999999999999999998887311 111211
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+. + ++.+++.+- |++|++++.+.|+++|++||+++||+++
T Consensus 129 --------------------~~----------------~--~~~e~f~~~--~~~w~~~~~~~~~~~~~~lG~~~DW~~~ 168 (995)
T PTZ00419 129 --------------------RH----------------D--LGREEFLKK--VWEWKDKHGNNICNQLRRLGSSLDWSRE 168 (995)
T ss_pred --------------------hH----------------H--cCHHHHHHH--HHHHHHHHHHHHHHHHHHhCceeeCCCC
Confidence 11 1 223433333 5899999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEE--------------EEEEe
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYT--------------LIKMR 313 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~--------------~~~~~ 313 (1618)
|+|+| |.|.++|+|+|.+|+++|+||+|.+||+|||.|+|+|||+||++.+..+|+.+. .++|+
T Consensus 169 ~~T~d--~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~ 246 (995)
T PTZ00419 169 VFTMD--EQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYP 246 (995)
T ss_pred cCcCC--HHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEe
Confidence 99999 779999999999999999999999999999999999999999999887776421 12222
Q ss_pred eccCCccccccCCCCCc-EEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCC
Q psy5309 314 LVKPYPAKLCCLDSKPV-FLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDM 391 (1618)
Q Consensus 314 ~~~~~~~~~~~~~~~~~-~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~ 391 (1618)
+ .+++. +|+|||||||||+||+||||||++ +|..+ .
T Consensus 247 l-----------~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l---~---------------------------- 284 (995)
T PTZ00419 247 L-----------EDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKL---H---------------------------- 284 (995)
T ss_pred e-----------cCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHh---c----------------------------
Confidence 1 12233 999999999999999999999997 34332 1
Q ss_pred CeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEecc-ccceeeccCCchHHHHHHHHhc
Q psy5309 392 AYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVAL-CDQWYLDYGEPTWKAAAEQCLA 470 (1618)
Q Consensus 392 ~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l-~~QWfl~~~~~~~k~~~~~~~~ 470 (1618)
|..+.+++ +
T Consensus 285 -------------------------------------------------G~~~~~Pl~~--------------------- 294 (995)
T PTZ00419 285 -------------------------------------------------GKELIHPFIP--------------------- 294 (995)
T ss_pred -------------------------------------------------CCEEECCccC---------------------
Confidence 12222221 1
Q ss_pred cccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcc-cccc
Q psy5309 471 NMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNAL-NIKA 549 (1618)
Q Consensus 471 ~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~-~v~~ 549 (1618)
|..+| ++++ + +|++
T Consensus 295 -------------------------------~~~ip--------------------ii~~--------------~~~V~~ 309 (995)
T PTZ00419 295 -------------------------------DRKIP--------------------IIAD--------------DELVDM 309 (995)
T ss_pred -------------------------------CCEEE--------------------EEeC--------------CcccCC
Confidence 11255 5554 7 8999
Q ss_pred cCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhh
Q psy5309 550 EDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHL 629 (1618)
Q Consensus 550 ~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1618)
+.|||+| |+ +|+|+ |+||.++.+ |
T Consensus 310 ~~GTG~V------~~--------~Pahd------------~~D~~~~~~----------~-------------------- 333 (995)
T PTZ00419 310 EFGTGAV------KI--------TPAHD------------PNDYEIAKR----------H-------------------- 333 (995)
T ss_pred CcCCCCe------Ee--------CCCCC------------hHHHHHHHH----------c--------------------
Confidence 9999999 99 99999 999998876 3
Q ss_pred ccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee-
Q psy5309 630 LQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML- 708 (1618)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~- 708 (1618)
|++ .+.+|+ .+|+|+
T Consensus 334 ----------~L~---------------~~~~i~---------------------------------------~~G~~~~ 349 (995)
T PTZ00419 334 ----------NLP---------------FINIFT---------------------------------------LDGKINE 349 (995)
T ss_pred ----------CCC---------------eeeeeC---------------------------------------CCceEcC
Confidence 331 122221 267775
Q ss_pred -ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcc
Q psy5309 709 -VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFRE 787 (1618)
Q Consensus 709 -~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~ 787 (1618)
.|+|+|+.+++||++|++.|++.|++ ++.+
T Consensus 350 ~~~~~~Gl~~~~ar~~ii~~L~~~g~l-------------------------------------------------~~~~ 380 (995)
T PTZ00419 350 NGGEFAGMHRFDCRRKIEEELKEMGLL-------------------------------------------------RDKV 380 (995)
T ss_pred CCcccCCCCHHHHHHHHHHHHHhcCCE-------------------------------------------------EeeE
Confidence 68999999999999999999999975 4567
Q ss_pred cccccCCeEEEe-------ccCcceeecCCchHHHHHHHHHh--cccccChHHHHHHHHhhcCcCceeecccCCCCcccC
Q psy5309 788 KYHVTDEMCVVA-------LCDQWYLDYGEPTWKAAAEQCLA--NMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLP 858 (1618)
Q Consensus 788 ~~~H~y~~c~~~-------~~~QWfi~~~~~~~k~~~~~~i~--~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP 858 (1618)
+|.|+||||||+ +++||||++ ++|+++++++++ +++|+|+.+++++.+||++++||||||||+||||||
T Consensus 381 ~~~~~~p~~~R~~~~ie~~~~~QWFi~~--~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP 458 (995)
T PTZ00419 381 PNPMRLPRCSRSGDIVEPMLIPQWYVNC--KDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIP 458 (995)
T ss_pred EeecCCCEeCCCCCEEEEEecCeeeEec--HHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceee
Confidence 889999999998 799999999 689999999997 799999999999999999999999999999999999
Q ss_pred CCccccccccCCc------ceEeehhHHHHHhhcC-ccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHH
Q psy5309 859 WDEQWLIESLSDS------TIYMAYYTVAHLLQGG-TFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLD 931 (1618)
Q Consensus 859 ~d~~w~~e~~~D~------~iy~~~~ti~~~l~~~-~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~ 931 (1618)
+ |+|++|++. ..++.-......+... ...|... ....-...+|++|+||+|+..+....+.|.+
T Consensus 459 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~--- 529 (995)
T PTZ00419 459 A---YRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSE---EDFELEQDEDVLDTWFSSGLFPFSTLGWPDQ--- 529 (995)
T ss_pred E---EEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCcc---ccCCeEECCceEEEEEeCCHHHHHHhCCCCC---
Confidence 9 999987642 1122111222222100 0000000 0011234679999999987632222333322
Q ss_pred HHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhccccccc
Q psy5309 932 IMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQ 1011 (1618)
Q Consensus 932 ~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~ 1011 (1618)
.+.|++|||+|++++|+|++++ | +..+++.
T Consensus 530 --~~~~~~~~P~d~~~~G~Dii~~------------W-----------------------------~arm~~~------- 559 (995)
T PTZ00419 530 --TDDLQRFFPTSLLETGSDILFF------------W-----------------------------VARMVMM------- 559 (995)
T ss_pred --hHHHhhcCCCcEEEechhHHhH------------H-----------------------------HHHHHHH-------
Confidence 2458899999999999997766 4 0000000
Q ss_pred ccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHH
Q psy5309 1012 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESM 1091 (1618)
Q Consensus 1012 ~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~ 1091 (1618)
+
T Consensus 560 ------------------------------------------------------------------~------------- 560 (995)
T PTZ00419 560 ------------------------------------------------------------------S------------- 560 (995)
T ss_pred ------------------------------------------------------------------H-------------
Confidence 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHh
Q psy5309 1092 ADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT 1171 (1618)
Q Consensus 1092 ~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~ 1171 (1618)
+
T Consensus 561 -----------------~-------------------------------------------------------------- 561 (995)
T PTZ00419 561 -----------------L-------------------------------------------------------------- 561 (995)
T ss_pred -----------------H--------------------------------------------------------------
Confidence 0
Q ss_pred cccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-ccc
Q psy5309 1172 AAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSA 1250 (1618)
Q Consensus 1172 k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~ 1250 (1618)
+. .+..|++.|++||+|+| +|+
T Consensus 562 ----------------------------------------------------~~-----~~~~Pfk~v~~HG~v~d~~G~ 584 (995)
T PTZ00419 562 ----------------------------------------------------HL-----TDKLPFKTVFLHAMVRDSQGE 584 (995)
T ss_pred ----------------------------------------------------Hh-----cCCCChHHHhccceEECCCCC
Confidence 00 02346799999999999 999
Q ss_pred ccccccCCcCCHHHHHH-------------------------------------hcCcceeeeehhccCCCCcCcccCHH
Q psy5309 1251 KMSKSEGNFLTLTEAVK-------------------------------------KFSADGMRLCLADSGDSVEDANFVES 1293 (1618)
Q Consensus 1251 KMSKSlGNvI~P~~ii~-------------------------------------~yGaD~lRl~l~~~~~~~~D~~fs~~ 1293 (1618)
|||||+||||||.++|+ +||||+|||||++.++.++|++|+.+
T Consensus 585 KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~ 664 (995)
T PTZ00419 585 KMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDIN 664 (995)
T ss_pred CcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHH
Confidence 99999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhccc-cc---CCCCCCCcchHHHHHHH
Q psy5309 1294 MADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQS-TL---RTGSQDSFNDKVFLSEM 1369 (1618)
Q Consensus 1294 ~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~D~~il~~l 1369 (1618)
.+....+..|+.| |.++|+..... ....... .. .+...+..+|+|+++++
T Consensus 665 ~v~~~~~f~nklw------------N~~rf~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~D~wIls~L 718 (995)
T PTZ00419 665 RVVGYRHFCNKLW------------NAVKFALMKLL--------------KDFNLPNSTLFKPNNVESLPWEDKWILHRL 718 (995)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHhccc--------------ccccccccccccccccccCCHHHHHHHHHH
Confidence 8876554444321 11222221110 0000000 00 00123456799999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhccc
Q psy5309 1370 NLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIK 1447 (1618)
Q Consensus 1370 ~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~ 1447 (1618)
+.++++++++|++|+|+.|+++++ +|+ .++|+|++.+++
T Consensus 719 ~~~i~~v~~~~e~y~f~~A~~~i~-~F~~~~~~n~Yie~~K~-------------------------------------- 759 (995)
T PTZ00419 719 NVAIKEVTEGFKEYDFSEATQATY-NFWLYELCDVYLELIKP-------------------------------------- 759 (995)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH-HHHHHhhHHHHHHHhhh--------------------------------------
Confidence 999999999999999999999985 875 489999987763
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCC----CCce
Q psy5309 1448 ETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK----KGSI 1523 (1618)
Q Consensus 1448 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~----~~sv 1523 (1618)
|++...++.++ ..++++|.++|+.+++||||||||+|||+|+.|+. .+||
T Consensus 760 -----------------~l~~~~~~~~~---------~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~~~~~si 813 (995)
T PTZ00419 760 -----------------RLSKQSDGERK---------QHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYLRKSESI 813 (995)
T ss_pred -----------------hhhcCCCcHHH---------HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccCCCCCee
Confidence 22111111111 14677899999999999999999999999999863 4799
Q ss_pred EeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1524 VKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1524 ~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
+.+.||.++. .|+.+++.++.+++++.++|+.+..
T Consensus 814 ~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~ 850 (995)
T PTZ00419 814 SIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIAT 850 (995)
T ss_pred eccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999763 4889999999999999999998875
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-111 Score=1114.16 Aligned_cols=708 Identities=21% Similarity=0.309 Sum_probs=533.3
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
+++|+|+.||||+||.||||||+|++++|+++||+||+||+|+|++||||||+|+|..+++. +...|+.+
T Consensus 87 ~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~---l~~~~~~~------- 156 (958)
T PLN02943 87 GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKM---LASEGIKR------- 156 (958)
T ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHH---HHHcCCCh-------
Confidence 56799999999999999999999999999999999999999999999999999999999863 22223321
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccC
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRR 246 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~ 246 (1618)
. .++.+++.+. |++|++++.+.|+++|++||+++||++
T Consensus 157 ----------------------~------------------~~~re~f~~~--~~~~~~~~~~~~~~~~~~lG~s~Dw~~ 194 (958)
T PLN02943 157 ----------------------T------------------DLGRDEFTKR--VWEWKEKYGGTITNQIKRLGASCDWSR 194 (958)
T ss_pred ----------------------h------------------hCCHHHHHHH--HHHHHHHHHHHHHHHHHHhCcceecCC
Confidence 0 1223333333 589999999999999999999999999
Q ss_pred ceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCC
Q psy5309 247 TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLD 326 (1618)
Q Consensus 247 ~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 326 (1618)
+|+|+| |.|.++|+|+|.+|+++|+||+|.+||+|||.|+|+|||+||+|.+..++..| ++|++. +
T Consensus 195 ~~~T~d--~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~--i~f~l~----------~ 260 (958)
T PLN02943 195 ERFTLD--EQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYY--IKYRVA----------G 260 (958)
T ss_pred CcccCC--HHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccccEEE--EEEEEc----------C
Confidence 999999 88999999999999999999999999999999999999999999988776554 455542 1
Q ss_pred CCCcEEEEeecCccccccCceEEeCCCCC-ceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 327 SKPVFLVAATLRPETMYGQTNAWVRPDMA-YIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 327 ~~~~~l~i~TTrPeTl~g~~avaV~P~~~-Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
+++.+|+|||||||||+||+||||||++. |+.+ .|+.+
T Consensus 261 ~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l---~g~~~-------------------------------------- 299 (958)
T PLN02943 261 GSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKY---IGKMA-------------------------------------- 299 (958)
T ss_pred CCCCEEEEEeCChhhhhcceEEEECCCCHHHHHH---cCCEE--------------------------------------
Confidence 22368999999999999999999999984 8664 23211
Q ss_pred eccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhh
Q psy5309 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGA 485 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~ 485 (1618)
+.+++
T Consensus 300 ---------------------------------------~~Pl~------------------------------------ 304 (958)
T PLN02943 300 ---------------------------------------IVPMT------------------------------------ 304 (958)
T ss_pred ---------------------------------------ECCCc------------------------------------
Confidence 10110
Q ss_pred hhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCC
Q psy5309 486 SLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSA 565 (1618)
Q Consensus 486 ~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~ 565 (1618)
.|..+| ++++ ++|+++.|||+| |+
T Consensus 305 ---------------~~~~ip--------------------ii~~--------------~~V~~~~GTG~V------~~- 328 (958)
T PLN02943 305 ---------------YGRHVP--------------------IIAD--------------RYVDKDFGTGVL------KI- 328 (958)
T ss_pred ---------------CCCeee--------------------EEec--------------CcccCCCCCceE------Ee-
Confidence 022256 5554 789999999999 99
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 645 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1618)
+|+|+ |.||.++.+ + |++.
T Consensus 329 -------~Pahd------------~~D~~~~~~----------~------------------------------~L~~-- 347 (958)
T PLN02943 329 -------SPGHD------------HNDYLLARK----------L------------------------------GLPI-- 347 (958)
T ss_pred -------CCCCC------------hHHHHHHHH----------c------------------------------CCCc--
Confidence 99999 999998876 3 3311
Q ss_pred cceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHH
Q psy5309 646 NCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQ 725 (1618)
Q Consensus 646 ~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~ 725 (1618)
+.+|+ .+|+|+ ++.|+.|++||++|+
T Consensus 348 -------------~~~id---------------------------------------~~G~~~--~~~g~~~~ear~~iv 373 (958)
T PLN02943 348 -------------LNVMN---------------------------------------KDGTLN--EVAGLYWFEAREKLW 373 (958)
T ss_pred -------------eeeeC---------------------------------------CCceee--ccCCccHHHHHHHHH
Confidence 11221 156665 245777999999999
Q ss_pred HHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe------
Q psy5309 726 KKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA------ 799 (1618)
Q Consensus 726 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~------ 799 (1618)
++|++.|++ ++.+++.|+||+|||+
T Consensus 374 ~~L~~~g~l-------------------------------------------------~~~e~~~~~~p~c~R~~~~Ie~ 404 (958)
T PLN02943 374 SDLEETGLA-------------------------------------------------VKKEPHTLRVPRSQRGGEVIEP 404 (958)
T ss_pred HHHHHCCCe-------------------------------------------------eeeeeeecCCCeeCCCCcEeEE
Confidence 999999975 5678899999999997
Q ss_pred -ccCcceeecCCchHHHHHHHHHh--cccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEee
Q psy5309 800 -LCDQWYLDYGEPTWKAAAEQCLA--NMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA 876 (1618)
Q Consensus 800 -~~~QWfi~~~~~~~k~~~~~~i~--~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~ 876 (1618)
+++|||+++ ..|+++++++++ +|+|+|+.+++++.+||+|++||||||||+||||||+ |+|++.+++..|+.
T Consensus 405 ~~~~QWFi~~--~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~---w~~~~~~~~~~~~v 479 (958)
T PLN02943 405 LVSKQWFVTM--EPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKDCEEDYIV 479 (958)
T ss_pred EeccceeEEH--HHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCc---eeccccCCCceEEe
Confidence 799999999 689999999996 5999999999999999999999999999999999999 99864333333443
Q ss_pred hhHHHHHhhc-CccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeeccccccc
Q psy5309 877 YYTVAHLLQG-GTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQN 955 (1618)
Q Consensus 877 ~~ti~~~l~~-~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~ 955 (1618)
.......+.. ...+|... .....++++|+||+|+..+-...+.+.. .++.|++|||+|++++|+|++++
T Consensus 480 ~~~~~~~~~~~~~~~g~~~------~~~~~~DVlDtWFdS~l~p~s~lgwp~~----~~~~~~~~yP~dl~~~G~Dii~f 549 (958)
T PLN02943 480 ARSAEEALEKAREKYGKDV------EIYQDPDVLDTWFSSALWPFSTLGWPDV----SAEDFKKFYPTTVLETGHDILFF 549 (958)
T ss_pred cCcHHHHHHHhhhhcCCch------heeecCceEEEEEcCccchHHhcCCCcc----ChHHHhccCCCeEEEEeehHHHH
Confidence 3333333221 00112110 1234689999999998532112222221 13568899999999999998755
Q ss_pred chhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcE
Q psy5309 956 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRG 1035 (1618)
Q Consensus 956 Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~ 1035 (1618)
| +...++.
T Consensus 550 ------------W-----------------------------~a~m~~~------------------------------- 557 (958)
T PLN02943 550 ------------W-----------------------------VARMVMM------------------------------- 557 (958)
T ss_pred ------------H-----------------------------HHHHHHh-------------------------------
Confidence 3 0000000
Q ss_pred EEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhccc
Q psy5309 1036 IRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQST 1115 (1618)
Q Consensus 1036 v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~ 1115 (1618)
+
T Consensus 558 ------------------------------------------~------------------------------------- 558 (958)
T PLN02943 558 ------------------------------------------G------------------------------------- 558 (958)
T ss_pred ------------------------------------------h-------------------------------------
Confidence 0
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCc
Q psy5309 1116 LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCP 1195 (1618)
Q Consensus 1116 ~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP 1195 (1618)
T Consensus 559 -------------------------------------------------------------------------------- 558 (958)
T PLN02943 559 -------------------------------------------------------------------------------- 558 (958)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCccee
Q psy5309 1196 VCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGM 1274 (1618)
Q Consensus 1196 ~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~l 1274 (1618)
.. . .+..|++.+.+||+++| +|+|||||+||||+|.+++++||+|++
T Consensus 559 --------------~~-------------~-----~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDal 606 (958)
T PLN02943 559 --------------IE-------------F-----TGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDAL 606 (958)
T ss_pred --------------hh-------------h-----cCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHH
Confidence 00 0 02245789999999998 999999999999999999999999999
Q ss_pred eeehhccCCCCcCcccCHHHHHHHHHHhhhhhh--hhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhccccc
Q psy5309 1275 RLCLADSGDSVEDANFVESMADAAVKKFSADGM--RLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTL 1352 (1618)
Q Consensus 1275 Rl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~--~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1352 (1618)
|||+++. .+++|++|+++.+++..+.+|+.++ ||.+.++.+. .. . ... ..+..+.|++.
T Consensus 607 R~~l~~~-~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~------~~---~----~~~--~~~~~~~~~~~--- 667 (958)
T PLN02943 607 RFTLALG-TAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQ------SD---T----SAW--EHILACKFDKE--- 667 (958)
T ss_pred HHHHHhC-CCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccc------cc---c----ccc--cccccccCCcc---
Confidence 9999987 4589999999998886665653321 1111111000 00 0 000 00000112211
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhc
Q psy5309 1353 RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLC 1430 (1618)
Q Consensus 1353 ~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~ 1430 (1618)
.....+...|+|++++++.+++++.++|++|+|+.|+++++ +|+ .++|+|++.+|
T Consensus 668 ~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~-~f~~~~~~d~YiE~~K---------------------- 724 (958)
T PLN02943 668 ESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIY-DFFWSDFADWYIEASK---------------------- 724 (958)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHH-HHHHHHHHHHHHHhcc----------------------
Confidence 00123467899999999999999999999999999999985 985 59999997776
Q ss_pred CcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHH
Q psy5309 1431 PVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVA 1510 (1618)
Q Consensus 1431 P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~a 1510 (1618)
+|++..++...+ ..++++|.++++.+++||||||||+|
T Consensus 725 ---------------------------------prl~~~~~~~~~---------~~a~~vL~~vl~~ll~LL~PfmPfit 762 (958)
T PLN02943 725 ---------------------------------TRLYHSGDNSAL---------SRAQAVLLYVFENILKLLHPFMPFVT 762 (958)
T ss_pred ---------------------------------HhhccCCchHHH---------HHHHHHHHHHHHHHHHHHhCcchhHH
Confidence 233332211111 14677899999999999999999999
Q ss_pred HHHHHHcC-CCCceEeccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1511 EHVYQLLG-KKGSIVKARWPEGGP-IDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1511 Eeiw~~l~-~~~sv~~~~~p~~~~-~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
||||+.|+ +++||+.+.||+.+. .|..++++++.+++++.++|+...+
T Consensus 763 EELwq~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~v~~ii~~iR~~r~~ 812 (958)
T PLN02943 763 EELWQALPYRKEALIVSPWPQTSLPKDLKSIKRFENLQSLTRAIRNARAE 812 (958)
T ss_pred HHHHHHcCCCCCceeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 456999999999763 3778899999999999999998865
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-111 Score=1122.31 Aligned_cols=724 Identities=19% Similarity=0.254 Sum_probs=553.6
Q ss_pred cchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCC
Q psy5309 7 FKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSP 86 (1618)
Q Consensus 7 ~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1618)
-+.-.+.++|++||++|+++++|+.+... .+
T Consensus 16 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~-------------------------------------------------~~ 46 (1052)
T PRK14900 16 AKGYEHREVEARWYPFWQERGYFHGDEHD-------------------------------------------------RT 46 (1052)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCccCCccc-------------------------------------------------CC
Confidence 34446788999999999999999875321 13
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
+++|+|+.||||+||.|||||++|++++|+++||+||+||+|+|++||||||+|+|..+++..+. ..|..
T Consensus 47 ~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~--~~~~~-------- 116 (1052)
T PRK14900 47 RPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKK--TEKKS-------- 116 (1052)
T ss_pred CCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhh--ccCCC--------
Confidence 67899999999999999999999999999999999999999999999999999999988762110 00111
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccC
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRR 246 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~ 246 (1618)
+ ..++.+++.+. |++|++++.+.|+++|++||+++||++
T Consensus 117 ---------------------~------------------~~~~~e~f~~~--~~~~~~~~~~~~~~~~~~lG~s~Dw~~ 155 (1052)
T PRK14900 117 ---------------------R------------------HDLGREAFLER--VWAWKEQYGSRIGEQHKALGASLDWQR 155 (1052)
T ss_pred ---------------------h------------------hhCCHHHHHHH--HHHHHHHHHHHHHHHHHHhchheecCC
Confidence 1 12233444333 589999999999999999999999999
Q ss_pred ceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCC
Q psy5309 247 TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLD 326 (1618)
Q Consensus 247 ~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 326 (1618)
+|+|+| |.|.++|+|+|.+|+++|+||+|.++|+|||.|+|+|||+||++++.... .+..++|++.
T Consensus 156 ~~~T~d--~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~-~~~~i~f~l~----------- 221 (1052)
T PRK14900 156 ERFTMD--EGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQG-ELWSFAYPLA----------- 221 (1052)
T ss_pred CcCcCC--HHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCC-eEEEEEEEec-----------
Confidence 999999 88999999999999999999999999999999999999999998863322 2334666542
Q ss_pred CCCcEEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 327 SKPVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 327 ~~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
+++.+|+|||||||||+||+||||||++ +|..+ .|
T Consensus 222 ~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L---~G----------------------------------------- 257 (1052)
T PRK14900 222 DGSGEIVVATTRPETMLGDTAVAVHPLDPRYMAL---HG----------------------------------------- 257 (1052)
T ss_pred CCCcEEEEEECchhhhhcceeEEECCCcHHHHHh---cC-----------------------------------------
Confidence 2346899999999999999999999997 34322 12
Q ss_pred eccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhh
Q psy5309 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGA 485 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~ 485 (1618)
..+.++++
T Consensus 258 ------------------------------------~~~~~Pl~------------------------------------ 265 (1052)
T PRK14900 258 ------------------------------------KKVRHPIT------------------------------------ 265 (1052)
T ss_pred ------------------------------------CEEECCCC------------------------------------
Confidence 22222221
Q ss_pred hhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCC
Q psy5309 486 SLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSA 565 (1618)
Q Consensus 486 ~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~ 565 (1618)
|..+| ++++ ..+|+++.|||+| |+
T Consensus 266 ----------------~~~ip--------------------Ii~d-------------~~~vd~~~GTG~V------~~- 289 (1052)
T PRK14900 266 ----------------GRTFP--------------------IVAD-------------AILVDPKFGTGAV------KV- 289 (1052)
T ss_pred ----------------CCeeE--------------------EEec-------------ccccCcCCCCCeE------Ee-
Confidence 12255 4432 0468999999999 99
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 645 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1618)
+|+|+ |.||.++.+ + |++
T Consensus 290 -------~Pahd------------~~D~~~~~~----------~------------------------------~L~--- 307 (1052)
T PRK14900 290 -------TPAHD------------FNDFEVGKR----------H------------------------------GLE--- 307 (1052)
T ss_pred -------cCCCC------------hhHHHHHHH----------c------------------------------CCC---
Confidence 99999 999988766 3 331
Q ss_pred cceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHH
Q psy5309 646 NCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKL 723 (1618)
Q Consensus 646 ~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~ 723 (1618)
.+.+|+ .+|+|+ .|+|+|+.+++||++
T Consensus 308 ------------~~~~id---------------------------------------~~G~~~~~~~~~~Gl~~~ear~~ 336 (1052)
T PRK14900 308 ------------MITVIG---------------------------------------PDGRMTAEAGPLAGLDRFEARKE 336 (1052)
T ss_pred ------------ccceEC---------------------------------------CCcEEecCCcccCCcCHHHHHHH
Confidence 122331 267776 589999999999999
Q ss_pred HHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe----
Q psy5309 724 LQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA---- 799 (1618)
Q Consensus 724 i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~---- 799 (1618)
|+++|++.|++ ++.++|.|+||||||+
T Consensus 337 Ii~~L~~~g~l-------------------------------------------------~~~~~~~h~~~~c~R~~~~i 367 (1052)
T PRK14900 337 VKRLLAEQGLD-------------------------------------------------RGAKPHVLPLGRCQRSATIL 367 (1052)
T ss_pred HHHHHHhCCCe-------------------------------------------------ecceeeeccCceeCCCCceE
Confidence 99999999975 5667899999999998
Q ss_pred ---ccCcceeecCCchHHHHHHHHHhc--ccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceE
Q psy5309 800 ---LCDQWYLDYGEPTWKAAAEQCLAN--MNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 800 ---~~~QWfi~~~~~~~k~~~~~~i~~--v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
+++|||+++ ..|++++++.+++ ++|+|++.++++.+||++++||||||||+||||||+ |+|++ +.++
T Consensus 368 e~~~s~qWFi~l--~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~---w~~~~---~~~~ 439 (1052)
T PRK14900 368 EPLLSDQWYVRI--EPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPA---WYCPD---GHVT 439 (1052)
T ss_pred EEEeccceeeeh--HHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCe---EEcCC---CcEE
Confidence 799999999 6899999999975 999999999999999999999999999999999999 99963 3332
Q ss_pred eehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccc
Q psy5309 875 MAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQ 954 (1618)
Q Consensus 875 ~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~ 954 (1618)
+.-. .. ..+..+ +.......++++|+||+++..+-...+.+.. .+.|++|||+|++++|+|+++
T Consensus 440 v~~~-----~~--~~~~~~----~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~-----~~~~~~~~P~d~~~~G~Dii~ 503 (1052)
T PRK14900 440 VARE-----TP--EACSTC----GKAELRQDEDVLDTWFSSGLWPFSTMGWPEQ-----TDTLRTFYPTSVMETGHDIIF 503 (1052)
T ss_pred eccc-----cc--cccccc----CccceecCCceEEEEEcCChHHHHHHcCCCc-----hHHHHhhCCchhhcccccHHh
Confidence 2111 00 000000 1112345789999999988532212223321 235788999999999998776
Q ss_pred cchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCc
Q psy5309 955 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPR 1034 (1618)
Q Consensus 955 ~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk 1034 (1618)
+ | ++ +.++
T Consensus 504 ~------------W-------~a----------------------~~l~------------------------------- 511 (1052)
T PRK14900 504 F------------W-------VA----------------------RMMM------------------------------- 511 (1052)
T ss_pred H------------H-------HH----------------------HHHH-------------------------------
Confidence 6 3 00 0000
Q ss_pred EEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcc
Q psy5309 1035 GIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQS 1114 (1618)
Q Consensus 1035 ~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~ 1114 (1618)
+ +
T Consensus 512 -----------------------------------------~-~------------------------------------ 513 (1052)
T PRK14900 512 -----------------------------------------M-G------------------------------------ 513 (1052)
T ss_pred -----------------------------------------H-H------------------------------------
Confidence 0 0
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcC
Q psy5309 1115 TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLC 1194 (1618)
Q Consensus 1115 ~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLa 1194 (1618)
+
T Consensus 514 ---------------------------------------------~---------------------------------- 514 (1052)
T PRK14900 514 ---------------------------------------------L---------------------------------- 514 (1052)
T ss_pred ---------------------------------------------H----------------------------------
Confidence 0
Q ss_pred cCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcce
Q psy5309 1195 PVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADG 1273 (1618)
Q Consensus 1195 P~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~ 1273 (1618)
...+..||+.|++||||+| +|+|||||+||||||.++|++||+|+
T Consensus 515 ----------------------------------~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDa 560 (1052)
T PRK14900 515 ----------------------------------HFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADA 560 (1052)
T ss_pred ----------------------------------HhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHH
Confidence 0001245799999999999 99999999999999999999999999
Q ss_pred eeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccC
Q psy5309 1274 MRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLR 1353 (1618)
Q Consensus 1274 lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1353 (1618)
|||||++.++.++|++||++.++...+.+|+. || ++|+..++. ..|......+
T Consensus 561 lR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl------------~N-~~R~~~~~~--------------~~~~~~~~~~ 613 (1052)
T PRK14900 561 LRFTLAALTAQGRDIKLAKERIEGYRAFANKL------------WN-ASRFALMNL--------------SGYQERGEDP 613 (1052)
T ss_pred HHHHHHhcCCCCCCCcccHHHHHHHHHHHHHH------------HH-HHHHHHHhh--------------hccCcccccc
Confidence 99999999899999999999886655444432 22 344433211 1121111111
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcC
Q psy5309 1354 TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLCP 1431 (1618)
Q Consensus 1354 ~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P 1431 (1618)
........|+||+++++.+++++.++|++|+|+.|++.++ +|+ .++|+|++.+++
T Consensus 614 ~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~-~f~~~~~~n~Yie~~k~---------------------- 670 (1052)
T PRK14900 614 ARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVY-AFVWHELCDWYIELAKE---------------------- 670 (1052)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHhhhHHHHHhccH----------------------
Confidence 1223456899999999999999999999999999999985 887 499999987662
Q ss_pred cchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHH
Q psy5309 1432 VCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAE 1511 (1618)
Q Consensus 1432 ~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aE 1511 (1618)
+++.... .++ ...+++|.++|..+++||+||+||+||
T Consensus 671 ---------------------------------~l~~~~~-~~~---------~~~~~~L~~~L~~l~~LLaPfmP~~aE 707 (1052)
T PRK14900 671 ---------------------------------ALASEDP-EAR---------RSVQAVLVHCLQTSYRLLHPFMPFITE 707 (1052)
T ss_pred ---------------------------------hhccCCH-HHH---------HHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 2222110 011 135667889999999999999999999
Q ss_pred HHHHHcCC-------CCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1512 HVYQLLGK-------KGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1512 eiw~~l~~-------~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
|||+.|+. .+||+.+.||+.+.+|..+++.++.+++++.++|+.+.+
T Consensus 708 eiw~~L~~~~~~~~~~~SV~~~~wP~~~~~d~~~e~~~~~v~~ii~~iR~~R~~ 761 (1052)
T PRK14900 708 ELWHVLRAQVGASAWADSVLAAEYPRKGEADEAAEAAFRPVLGIIDAVRNIRGE 761 (1052)
T ss_pred HHHHHhccccccCCCCCceeecCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999863 269999999998878888999999999999999998875
|
|
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-108 Score=1081.29 Aligned_cols=714 Identities=21% Similarity=0.298 Sum_probs=551.8
Q ss_pred cchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCC
Q psy5309 7 FKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSP 86 (1618)
Q Consensus 7 ~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1618)
-++-.+.++|++||++|+++++|+.+++. +
T Consensus 7 ~~~~~~~~~E~~~~~~W~~~~~f~~~~~~--------------------------------------------------~ 36 (800)
T PRK13208 7 PKKYDPEELEEKWQKIWEEEGTYKFDPDE--------------------------------------------------R 36 (800)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCccccccc--------------------------------------------------C
Confidence 35667899999999999999999876532 2
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
+++|+|++|||||||.|||||+++++++|+++||+||+||+|++++||||||+|||..|++. +|+.+
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~------~g~~~------- 103 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKY------YGIRK------- 103 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHH------hCCCc-------
Confidence 57899999999999999999999999999999999999999999999999999999988762 24431
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccC
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRR 246 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~ 246 (1618)
+ + ++.+++++- |++|++++.+.++++|++||+++||++
T Consensus 104 ----------------------~----------------~--~~~~~f~~~--~~~~~~~~~~~~~~~~~~lg~s~Dw~~ 141 (800)
T PRK13208 104 ----------------------D----------------D--ISREEFIEL--CRELTDEDEKKFRELWRRLGLSVDWSL 141 (800)
T ss_pred ----------------------c----------------c--CCHHHHHHH--HHHHHHHHHHHHHHHHHHhCeeeccCC
Confidence 0 0 122333333 579999999999999999999999999
Q ss_pred ceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCC
Q psy5309 247 TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLD 326 (1618)
Q Consensus 247 ~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 326 (1618)
+|.|+| |.|.++|+|+|.+|+++|+||+|.++|+|||.|+|+|||+||++++..++..| ++|++.
T Consensus 142 ~~~T~d--~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~--ikf~~~----------- 206 (800)
T PRK13208 142 EYQTIS--PEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNY--IKFPVE----------- 206 (800)
T ss_pred CcccCC--HHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhccccccceEEE--EEEEec-----------
Confidence 999999 88999999999999999999999999999999999999999999988777655 555542
Q ss_pred CCCcEEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 327 SKPVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 327 ~~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
++.+|+|||||||||+||+||||||++ +|..+ .|
T Consensus 207 -~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l---~g----------------------------------------- 241 (800)
T PRK13208 207 -DGEEIEIATTRPELLPACVAVVVHPDDERYKHL---VG----------------------------------------- 241 (800)
T ss_pred -CCCEEEEEeCCcchhhhCeEEEECCCchHHHHh---cC-----------------------------------------
Confidence 135899999999999999999999996 34322 11
Q ss_pred eccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhh
Q psy5309 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGA 485 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~ 485 (1618)
..+..+++
T Consensus 242 ------------------------------------~~~~~P~~------------------------------------ 249 (800)
T PRK13208 242 ------------------------------------KTAIVPLF------------------------------------ 249 (800)
T ss_pred ------------------------------------CEEEcCCC------------------------------------
Confidence 11111111
Q ss_pred hhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCC
Q psy5309 486 SLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSA 565 (1618)
Q Consensus 486 ~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~ 565 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 250 ----------------~~~ip--------------------ii~~--------------~~V~~~~GTG~V------~~- 272 (800)
T PRK13208 250 ----------------GVEVP--------------------ILAD--------------PLVDPDFGTGAV------MI- 272 (800)
T ss_pred ----------------CCcce--------------------EECC--------------CccCCCCCcceE------Ee-
Confidence 11255 5543 789999999999 98
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 645 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1618)
+|+|+ +.||.++.+ | |++
T Consensus 273 -------~p~hd------------~~D~~~~~~----------~------------------------------~l~--- 290 (800)
T PRK13208 273 -------CTFGD------------KTDVTWWRE----------L------------------------------NLP--- 290 (800)
T ss_pred -------CCCCC------------HHHHHHHHH----------c------------------------------CCC---
Confidence 89999 999987765 3 332
Q ss_pred cceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHH
Q psy5309 646 NCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKL 723 (1618)
Q Consensus 646 ~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~ 723 (1618)
++++|+ .+|+|+ +|+|+|++|++||++
T Consensus 291 ------------~~~~i~---------------------------------------~~G~~~~~~g~~~G~~~~~a~~~ 319 (800)
T PRK13208 291 ------------TRIIID---------------------------------------EDGRMTEAAGKLAGLTIEEARKK 319 (800)
T ss_pred ------------cccccC---------------------------------------CCceEecCCcccCCCCHHHHHHH
Confidence 233332 267776 789999999999999
Q ss_pred HHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe----
Q psy5309 724 LQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA---- 799 (1618)
Q Consensus 724 i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~---- 799 (1618)
|++.|++.|++ ++.+++.|+||+|||+
T Consensus 320 i~~~L~~~g~~-------------------------------------------------~~~~~~~~~~p~~~r~~~~v 350 (800)
T PRK13208 320 IVEDLKSGGLL-------------------------------------------------GKQEPIKHNVKFCERCDTPL 350 (800)
T ss_pred HHHHHHhCCCe-------------------------------------------------eceeeeeccCCccCCCCCEE
Confidence 99999999964 4567788999999987
Q ss_pred ---ccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcC-ceeecccCCCCcccCCCccccccccCCcceEe
Q psy5309 800 ---LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLH-EYACSRTYGLGTKLPWDEQWLIESLSDSTIYM 875 (1618)
Q Consensus 800 ---~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~-DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~ 875 (1618)
+++|||+++ ++|++++++.+++++|+|++.++++.+||++++ ||||||||+||||||+ |+|++|+. +++
T Consensus 351 ~~~~~~qwfl~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~---~~~~~~g~--~~~ 423 (800)
T PRK13208 351 EILVTRQWFIKV--LDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPV---WYCKDCGH--PIL 423 (800)
T ss_pred EEeccceeeEeC--HHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceE---EEeCCCCC--eec
Confidence 799999998 799999999999999999999999999999988 9999999999999999 99987642 222
Q ss_pred ----------ehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccce
Q psy5309 876 ----------AYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDL 945 (1618)
Q Consensus 876 ----------~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl 945 (1618)
+.+....+. +..+ +.......++++|+||+|+..+....+++.+ ++.|++|||+|+
T Consensus 424 ~~~~~l~~~~~~d~~~~~~-----~~~~----g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~-----~~~~~~~~P~d~ 489 (800)
T PRK13208 424 PDEEDLPVDPTKDEPPGYK-----CPQC----GSPGFEGETDVMDTWATSSITPLIVTGWERD-----EDLFEKVFPMDL 489 (800)
T ss_pred CchhhhccCchhhcccccc-----cccc----CCcCEEecCCEEEEEEeCCchHHHHhCCCCC-----hhhhhhcCCceE
Confidence 111111000 0000 0011223478999999987532112222221 356889999999
Q ss_pred EeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhcc
Q psy5309 946 RCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIW 1025 (1618)
Q Consensus 946 ~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~ 1025 (1618)
+++|+|++++|+.+.++.+.++
T Consensus 490 ~~~G~Di~~~w~~~~l~~~~~~---------------------------------------------------------- 511 (800)
T PRK13208 490 RPQGHDIIRTWLFYTILRAYLL---------------------------------------------------------- 511 (800)
T ss_pred EEeecchhhhHHHHHHHHHHHh----------------------------------------------------------
Confidence 9999999888532211000000
Q ss_pred CCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHH
Q psy5309 1026 GDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEW 1105 (1618)
Q Consensus 1026 p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~ 1105 (1618)
T Consensus 512 -------------------------------------------------------------------------------- 511 (800)
T PRK13208 512 -------------------------------------------------------------------------------- 511 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHH
Q psy5309 1106 VKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRF 1185 (1618)
Q Consensus 1106 l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~ 1185 (1618)
T Consensus 512 -------------------------------------------------------------------------------- 511 (800)
T PRK13208 512 -------------------------------------------------------------------------------- 511 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHH
Q psy5309 1186 VEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1186 l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ 1264 (1618)
.+..|++.+.+|||+++ +|+|||||+||+|+|.+
T Consensus 512 ---------------------------------------------~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~ 546 (800)
T PRK13208 512 ---------------------------------------------TGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEE 546 (800)
T ss_pred ---------------------------------------------cCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHH
Confidence 01134688999999998 99999999999999999
Q ss_pred HHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHH
Q psy5309 1265 AVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKE 1344 (1618)
Q Consensus 1265 ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~ 1344 (1618)
++++||+|++|||++ .+++.+|++||++.+.+..+.+++. +|+.+++..
T Consensus 547 ~i~~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~~~~~l~kl------------------------------~N~~r~~~~ 595 (800)
T PRK13208 547 LLEKYGADAVRYWAA-SARLGSDTPFDEKQVKIGRRLLTKL------------------------------WNASRFVLH 595 (800)
T ss_pred HHHHcCccHHHHHHh-cCCCCCCceecHHHHHHHHHHHHHH------------------------------HHHHHHHHh
Confidence 999999999999999 6789999999999887655555422 222222221
Q ss_pred HhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcccchhHHHHHHH
Q psy5309 1345 ILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGGMHRTLVLRFV 1422 (1618)
Q Consensus 1345 ~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~~~~~~~l~~~ 1422 (1618)
+...............|+|++++++.+++++.++|++|+|+.|++.++ +|+. ++|+|++.+++
T Consensus 596 -~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~-~f~~~~~~n~Yie~~k~------------- 660 (800)
T PRK13208 596 -FSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIE-SFFWHVFCDDYLELVKS------------- 660 (800)
T ss_pred -cccccccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHhhHHHHHHhhH-------------
Confidence 111001111223456899999999999999999999999999999985 8874 79999987763
Q ss_pred HHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHh
Q psy5309 1423 EVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLL 1502 (1618)
Q Consensus 1423 ~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ll 1502 (1618)
|++....+.++ ..+++++.++|+.+++||
T Consensus 661 ------------------------------------------~~~~~~~~~~~---------~~~~~~l~~~l~~l~~LL 689 (800)
T PRK13208 661 ------------------------------------------RAYGEDEEEEQ---------KSARYTLYTVLDTLLRLL 689 (800)
T ss_pred ------------------------------------------HhcCCCCcHHH---------HHHHHHHHHHHHHHHHHh
Confidence 22221100001 146678899999999999
Q ss_pred ccchhhHHHHHHHHcCCCCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1503 CPVCPHVAEHVYQLLGKKGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1503 aPi~P~~aEeiw~~l~~~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
|||+||+|||+|+.|+ .+||+.+.||+.+. .+..+++.++.+++++..+|+...+
T Consensus 690 aPf~P~iaEelw~~L~-~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~r~~ 746 (800)
T PRK13208 690 APFLPFITEEVWSWLY-GGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRKYKSE 746 (800)
T ss_pred cccchhhHHHHHHhCC-CCceEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 67999999999763 3777888899999999999987654
|
|
| >KOG0433|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-108 Score=969.64 Aligned_cols=769 Identities=19% Similarity=0.240 Sum_probs=560.9
Q ss_pred CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHH-HHHHHHHHHHhcCCCCCCCC
Q psy5309 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKA-CADKLKREMESFGFPPQFPS 163 (1618)
Q Consensus 85 ~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~-~a~k~~~~~~~~gi~~~~~e 163 (1618)
+.+..|.+++ +||.||||||+|++++||+.||+-++|++|++++||||||+|||. .|.+- +..
T Consensus 56 ~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalss---l~~--------- 119 (937)
T KOG0433|consen 56 QQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSS---LTE--------- 119 (937)
T ss_pred ccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhh---hhh---------
Confidence 4567799998 999999999999999999999999999999999999999999994 54431 100
Q ss_pred CCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc
Q psy5309 164 EDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD 243 (1618)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D 243 (1618)
. .-.+++-++|+.+ +.+++..++.|++.|+|+|+..|
T Consensus 120 ~-----------------------------------------~~~~s~leiR~~A--r~fA~~AIk~Q~e~F~r~gv~aD 156 (937)
T KOG0433|consen 120 S-----------------------------------------EGSRTPLEIRAKA--RIFADEAIKKQMEAFRRWGVTAD 156 (937)
T ss_pred c-----------------------------------------cccCCcHHHHHHH--HHHHHHHHHHHHHHHHHheeecc
Confidence 0 0123456677766 57788899999999999999999
Q ss_pred ccCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCC-CCCCeeEEEEEEeeccCCccc-
Q psy5309 244 WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGE-GVGPQEYTLIKMRLVKPYPAK- 321 (1618)
Q Consensus 244 w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~y~~~~~~~~~~~~~~- 321 (1618)
|.+.|.|++ |.|+....++|.+|+++|+|||+.+||+|+|...||||++|+||.+ .++++.|+.|+ +.+.....
T Consensus 157 W~n~Y~T~~--~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~--L~~~S~~~~ 232 (937)
T KOG0433|consen 157 WENPYVTKS--PSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFK--LINFSSSAH 232 (937)
T ss_pred CCCceeecC--hHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEe--ccCCccccc
Confidence 999999999 8899999999999999999999999999999999999999999987 58999986555 43322211
Q ss_pred cccCCCCCcEEEEeecCccccccCceEEeCCCCCceeeccc--CCccEEEEecccccCccCCCeeEEecCCCCeeEEEcC
Q psy5309 322 LCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCL--DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTA 399 (1618)
Q Consensus 322 ~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~--~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~ 399 (1618)
..+......|+.||||||||||+|.||++||+..|..++.- ...++++++..+.++ |+..
T Consensus 233 ~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~--fe~~---------------- 294 (937)
T KOG0433|consen 233 SEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEE--FEKS---------------- 294 (937)
T ss_pred cCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhh--hhhh----------------
Confidence 11112234799999999999999999999999999998651 125677777776554 2110
Q ss_pred CCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhh
Q psy5309 400 TGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEV 479 (1618)
Q Consensus 400 ~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~ 479 (1618)
.| ..-+|+..++|..+. |.++..++.++
T Consensus 295 -----------------~~-----~k~~i~~t~~g~~L~--~~~Y~~pl~~~---------------------------- 322 (937)
T KOG0433|consen 295 -----------------SD-----RKCKIVGTVKGANLI--GRRYKHPLHNE---------------------------- 322 (937)
T ss_pred -----------------cC-----cceeeeeecchhhcc--CceecCcCccc----------------------------
Confidence 01 112345556665555 33333332211
Q ss_pred hhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeee
Q psy5309 480 RRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDY 559 (1618)
Q Consensus 480 ~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~ 559 (1618)
. | .| ++. | .||+++.|||.|
T Consensus 323 -------~--------------~--~P--------------------~l~----g----------~hVT~~~GTGLV--- 342 (937)
T KOG0433|consen 323 -------L--------------G--LP--------------------ILE----G----------PHVTDTVGTGLV--- 342 (937)
T ss_pred -------c--------------C--Cc--------------------ccc----c----------cceecCccccee---
Confidence 0 0 34 222 1 799999999999
Q ss_pred eeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCC
Q psy5309 560 VFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 639 (1618)
Q Consensus 560 ~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1618)
|+ +|+|| ++||.++.+ +
T Consensus 343 ---HT--------AP~HG------------~eDYlv~l~----------------------------------------~ 359 (937)
T KOG0433|consen 343 ---HT--------APAHG------------FEDYLVAIS----------------------------------------K 359 (937)
T ss_pred ---ec--------CCCCC------------hHHHHHHhh----------------------------------------c
Confidence 99 99999 999887765 2
Q ss_pred CCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ec-ccCCcc
Q psy5309 640 GNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VG-EFKGKK 716 (1618)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~-~~~G~~ 716 (1618)
|+++. |+ |++ +|+++ .| .+.|+.
T Consensus 360 ~l~~~--s~---------------VD~-------------------------------------~G~yT~ea~~~l~Gk~ 385 (937)
T KOG0433|consen 360 GLRVE--SF---------------VDS-------------------------------------RGCYTREAGHDLDGKE 385 (937)
T ss_pred CCCcc--cc---------------cCC-------------------------------------CCceecccccccccch
Confidence 54321 11 222 45554 34 677776
Q ss_pred hHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeE
Q psy5309 717 VQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMC 796 (1618)
Q Consensus 717 v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c 796 (1618)
|. ++|+ .+||.+|++.=++.++|+|+||++
T Consensus 386 VL-------------------------------------~eG~-------------k~vl~~l~~~iv~~sky~HsYPYD 415 (937)
T KOG0433|consen 386 VL-------------------------------------GEGQ-------------KIVLRLLNHDIVHVSKYVHSYPYD 415 (937)
T ss_pred hh-------------------------------------cccc-------------HhHHHHHhhhhhhhhcccccCCcc
Confidence 51 1122 356777774449999999999999
Q ss_pred EEe-------ccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccC
Q psy5309 797 VVA-------LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLS 869 (1618)
Q Consensus 797 ~~~-------~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~ 869 (1618)
||+ +++||||++ ++.|..|.+++++|+|+|....+++..+++.+++|||||||.||+|||+ +|.++
T Consensus 416 WRTKKPvIiRAseQWFi~~--e~~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~---ly~k~-- 488 (937)
T KOG0433|consen 416 WRTKKPVIIRASEQWFIDV--EEIKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPA---LYDKN-- 488 (937)
T ss_pred cccCCceEEecchhheeeH--HhhhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCccee---EEecC--
Confidence 996 799999999 8999999999999999999999999999999999999999999999999 88874
Q ss_pred CcceEeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeec
Q psy5309 870 DSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSG 949 (1618)
Q Consensus 870 D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G 949 (1618)
.+...+...++.|.+......| .|.||..... ..++.+.. .++.-..
T Consensus 489 ~~~~l~ns~~~~h~~~~~eqeG-----------------sD~Ww~~~~e----ellpe~~~------------~e~~~~a 535 (937)
T KOG0433|consen 489 GGSYLSNSLIEWHAKLTREQEG-----------------SDVWWEIDVE----ELLPEEEV------------REIPDIA 535 (937)
T ss_pred CCceeehHHHHHHHHHHHHHhC-----------------CcceEeCChh----HhCcHhhh------------cccchhH
Confidence 2445566777777764211222 2444433221 01111111 0111112
Q ss_pred ccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCC
Q psy5309 950 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEP 1029 (1618)
Q Consensus 950 ~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~ 1029 (1618)
+|..++..++- +|-+.++.|-+ ..|
T Consensus 536 ~ey~kgtDimD------VWFDSGssWs~----------------------------------------------v~~--- 560 (937)
T KOG0433|consen 536 SEYKKGTDIMD------VWFDSGSSWSA----------------------------------------------VLD--- 560 (937)
T ss_pred HHhccCCceee------eEecCCCccee----------------------------------------------ecC---
Confidence 22222211110 12000000000 000
Q ss_pred CCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHH
Q psy5309 1030 EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEI 1109 (1618)
Q Consensus 1030 ~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~ 1109 (1618)
| |. .+.-|
T Consensus 561 -------------------------~-----------~~-----------~~~aD------------------------- 568 (937)
T KOG0433|consen 561 -------------------------N-----------ER-----------EHVAD------------------------- 568 (937)
T ss_pred -------------------------C-----------CC-----------Cccee-------------------------
Confidence 0 00 00000
Q ss_pred HHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Q psy5309 1110 LATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQ 1189 (1618)
Q Consensus 1110 l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l 1189 (1618)
-|++
T Consensus 569 --------------------------------------------------------v~LE-------------------- 572 (937)
T KOG0433|consen 569 --------------------------------------------------------VYLE-------------------- 572 (937)
T ss_pred --------------------------------------------------------eEEe--------------------
Confidence 0000
Q ss_pred HHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHh
Q psy5309 1190 ALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKK 1268 (1618)
Q Consensus 1190 ~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~ 1268 (1618)
|.| -|||||+|+++++.+....+||+.|++|||++| +|.|||||+||||||..+++.
T Consensus 573 -------------------G~D---Q~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G 630 (937)
T KOG0433|consen 573 -------------------GVD---QFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDG 630 (937)
T ss_pred -------------------cch---hcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCC
Confidence 444 399999999999999999999999999999999 999999999999999999998
Q ss_pred ------cCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhh--hhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHH
Q psy5309 1269 ------FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADG--MRLCLADSGDSVEDANFVESMADAGILRLYTFIE 1340 (1618)
Q Consensus 1269 ------yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~--~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~ 1340 (1618)
||||+||||+|++ +.+.|+.+++++++++.+.+.+.| +|++|+|++++
T Consensus 631 ~~k~payGaD~LR~WVA~~-~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~----------------------- 686 (937)
T KOG0433|consen 631 SLKQPAYGADGLRFWVAGS-ENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDF----------------------- 686 (937)
T ss_pred cccCCCccccceeeeeecc-cccCceecCHHHHHHHHHHHHHHHhHHHHHhhccccc-----------------------
Confidence 9999999999965 889999999999999877777443 56666655433
Q ss_pred HHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcccchhHHH
Q psy5309 1341 WVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGGMHRTLV 1418 (1618)
Q Consensus 1341 ~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~~~~~~~ 1418 (1618)
++.....+..++.-+|+++|.+|+++.+++++.|++|+|+++++.+. .|.+ ++|+|+++.|
T Consensus 687 ------~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq-~F~~~~lSa~YfdivK---------- 749 (937)
T KOG0433|consen 687 ------DGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQ-QFLQRNLSAFYFDIVK---------- 749 (937)
T ss_pred ------CCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHhhHHHHHHHh----------
Confidence 33322334556778899999999999999999999999999999985 7775 8999998877
Q ss_pred HHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHH
Q psy5309 1419 LRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQ 1498 (1618)
Q Consensus 1419 l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 1498 (1618)
|+|||+.. .+..|| ++|++|.+++..+
T Consensus 750 -----------------------DRLY~~~~----------~s~~rr--------------------s~QttL~h~l~~l 776 (937)
T KOG0433|consen 750 -----------------------DRLYCDKV----------GSESRR--------------------SAQTTLHHLLHNL 776 (937)
T ss_pred -----------------------hhhhcCCC----------CcHHHH--------------------HHHHHHHHHHHHH
Confidence 77777766 444455 7999999999999
Q ss_pred HHHhccchhhHHHHHHHHcC-CCCceEeccCCCCCCC--CHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCC
Q psy5309 1499 ALLLCPVCPHVAEHVYQLLG-KKGSIVKARWPEGGPI--DDI--LVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGG 1573 (1618)
Q Consensus 1499 ~~llaPi~P~~aEeiw~~l~-~~~sv~~~~~p~~~~~--~~~--l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~ 1573 (1618)
++.||||+||+|||+||+++ ..+-+|...||..... ... +...+..+.+ .|....+.++.+...+++++.+
T Consensus 777 ~~~iaPIlP~LaeEvwq~lP~~~~~~f~~k~~~l~s~~~~~~~~~~~~~~~vl~----~~~~~~~~l~la~~~~~~~s~L 852 (937)
T KOG0433|consen 777 AHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLHSGLLTPHDQLSKHMKFVLE----VRNELESTLGLAIDTSKKGSVL 852 (937)
T ss_pred HHHHccccHHHHHHHHHhCCCCCCcccccCccccchhhcCchhHHHHHHHHHHH----HHHhHHHHHHhhhhhhhccceE
Confidence 99999999999999999998 4445999999987632 222 2223444444 8888888888888877666554
Q ss_pred CCc
Q psy5309 1574 GGV 1576 (1618)
Q Consensus 1574 ~~~ 1576 (1618)
+..
T Consensus 853 ~~~ 855 (937)
T KOG0433|consen 853 QVT 855 (937)
T ss_pred EEE
Confidence 433
|
|
| >KOG0432|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-102 Score=942.06 Aligned_cols=767 Identities=21% Similarity=0.292 Sum_probs=567.3
Q ss_pred CcccCcccchhHHhHHHhhhh--ccccccCCC---CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccccc
Q psy5309 57 RLHLGHTFSLSKFREKIYEET--VGDAVRSSP---DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131 (1618)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~ 131 (1618)
..++...|+|..+|..||.+| .+.+.|... ...|.+..||||+||.||||||++.++.|+++||+||.||.|+|.
T Consensus 39 ~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~ 118 (995)
T KOG0432|consen 39 SGPLPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWV 118 (995)
T ss_pred CCcccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeec
Confidence 456777899999999999998 456666644 678999999999999999999999999999999999999999999
Q ss_pred ccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCH
Q psy5309 132 FGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLED 211 (1618)
Q Consensus 132 ~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~ 211 (1618)
+|+||+|+++|..++|... ..| |+++. ++| .
T Consensus 119 PG~DHAGIATQ~VVEK~l~---~~~----------------------------~~~Rh----------------~lg--R 149 (995)
T KOG0432|consen 119 PGTDHAGIATQVVVEKQLA---REG----------------------------GKTRH----------------DLG--R 149 (995)
T ss_pred CCccccchhHHHHHHHHHH---Hhc----------------------------Ccchh----------------hcC--H
Confidence 9999999999999998522 111 12222 122 2
Q ss_pred HHHHHHhh-hhhHHhhchhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCc
Q psy5309 212 DEIRKFAD-ASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQP 290 (1618)
Q Consensus 212 ~e~~~f~~-~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~ 290 (1618)
+ +|.. .++|.+++...|.+||++||.++||+|+++||| |...++|.++|.+|+++|+||++.+.|||||..+|+
T Consensus 150 e---~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD--~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~sa 224 (995)
T KOG0432|consen 150 E---EFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMD--PKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSA 224 (995)
T ss_pred H---HHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccC--HHHHHHHHHHHHHHHhcCceEecCceeeechhHHhh
Confidence 3 4442 589999999999999999999999999999999 669999999999999999999999999999999999
Q ss_pred ccchhhccCCCCCCeeE------EEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCC-CceeecccC
Q psy5309 291 CMDHDRASGEGVGPQEY------TLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLD 363 (1618)
Q Consensus 291 lsd~Ev~~~~~~~~~~y------~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~ 363 (1618)
+||.||++.+..++... ..+.|.+. |...+ .+.+++..|+|+|||||||+||+||||||+| ||.++ .
T Consensus 225 iSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L--~~faY-~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~l---h 298 (995)
T KOG0432|consen 225 ISDIEVESVEIPGRTLLSVPGYDTKVEFGVL--YSFAY-PVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHL---H 298 (995)
T ss_pred hhhheecceecCCCceEecCCCCcceeeeee--eEEEE-eccCCCCeEEEecCCccccccceeEEeCCCCcccccc---c
Confidence 99999999876544321 11222211 00001 1235567999999999999999999999998 78655 3
Q ss_pred CccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCE
Q psy5309 364 SKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDE 443 (1618)
Q Consensus 364 ~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~ 443 (1618)
|+.+
T Consensus 299 Gk~~---------------------------------------------------------------------------- 302 (995)
T KOG0432|consen 299 GKFV---------------------------------------------------------------------------- 302 (995)
T ss_pred Ccee----------------------------------------------------------------------------
Confidence 4321
Q ss_pred EEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccc
Q psy5309 444 CVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYM 523 (1618)
Q Consensus 444 i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~ 523 (1618)
..+++ |.+||
T Consensus 303 -~hP~~----------------------------------------------------~r~lP----------------- 312 (995)
T KOG0432|consen 303 -KHPFT----------------------------------------------------GRKLP----------------- 312 (995)
T ss_pred -ecCCC----------------------------------------------------CCccc-----------------
Confidence 00010 22377
Q ss_pred eEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCC
Q psy5309 524 AYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKL 603 (1618)
Q Consensus 524 a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~ 603 (1618)
++.+ .+|+++.|||.| .. .|+|+ |.||.++.+
T Consensus 313 ---iI~D--------------~~Vd~~fGTGaV------KI--------TPaHd------------~nDyEvgkR----- 344 (995)
T KOG0432|consen 313 ---IICD--------------IAVDMEFGTGAV------KI--------TPAHD------------PNDYEVGKR----- 344 (995)
T ss_pred ---eeec--------------ccccccccccce------Ee--------cCCCC------------hhHHHHHHh-----
Confidence 4443 679999999999 77 89999 999998887
Q ss_pred CchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCC
Q psy5309 604 PWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQS 683 (1618)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~ 683 (1618)
+ |+ +++.||+
T Consensus 345 -----h------------------------------~L---------------~~~ni~~-------------------- 354 (995)
T KOG0432|consen 345 -----H------------------------------NL---------------EFINIFT-------------------- 354 (995)
T ss_pred -----c------------------------------CC---------------CceeEEc--------------------
Confidence 3 32 2334442
Q ss_pred cccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCc
Q psy5309 684 QNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGI 761 (1618)
Q Consensus 684 ~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 761 (1618)
.+|.|+ +|+|+||++|+||++|++.|++.|+. ++.+++.+
T Consensus 355 -------------------~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~-------------------~g~~~h~m 396 (995)
T KOG0432|consen 355 -------------------DDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLY-------------------VGKENHPM 396 (995)
T ss_pred -------------------CCCceeccchhccCcHHHHHHHHHHHHHHHhhhh-------------------hccCCCce
Confidence 268887 79999999999999999999999974 67788899
Q ss_pred eEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHh--cccccChHHHHHHHHhh
Q psy5309 762 VTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLA--NMNTYHDEVRRNFGASL 839 (1618)
Q Consensus 762 v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~--~v~~~P~~~k~~~~~~l 839 (1618)
|.++||||| +.+...+.+|||+++ .++.++++++++ +++++|+..+.++.+|+
T Consensus 397 vlpiCSRsg-----------------------DVIEpllkpQW~v~c--~ema~~A~~av~sG~L~i~P~~~~k~w~~W~ 451 (995)
T KOG0432|consen 397 VLPICSRSG-----------------------DVIEPLLKPQWFVSC--KEMAKKALKAVESGKLEILPEFHEKEWYRWL 451 (995)
T ss_pred eccccCCCC-----------------------Ccccccccchheeeh--HHHHHHHHHHHhcCCeEECchHHHHHHHHHH
Confidence 999999999 788888999999999 799999999998 79999999999999999
Q ss_pred cCcCceeecccCCCCcccCCCccccccc---cCCcceEeehhHHHHHhhc-CccCCCCCccCCCCcCCCCCcceeEEecc
Q psy5309 840 NWLHEYACSRTYGLGTKLPWDEQWLIES---LSDSTIYMAYYTVAHLLQG-GTFRGENGNALNIKAEDLTPEVWDYVFFK 915 (1618)
Q Consensus 840 ~~l~DW~ISRqr~WG~PIP~d~~w~~e~---~~D~~iy~~~~ti~~~l~~-~~~~g~~~~~l~~~~~~l~~~~~d~~f~~ 915 (1618)
++.+|||||||.|||++||+ |++.- ..++.-+|+.-+.+.-.+. ...+| .+
T Consensus 452 ~~i~DWCiSRQLWWGHrIPA---y~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g-~~--------------------- 506 (995)
T KOG0432|consen 452 ENIRDWCISRQLWWGHRIPA---YFVNLSDGRAEEDYWVVARSEEEAREKAAEKFG-PG--------------------- 506 (995)
T ss_pred hhccccchhhhhhhccccce---eeeecccCCCccceeEEeCCHHHHHHHHHHHhC-Cc---------------------
Confidence 99999999999999999999 87721 1112222222222222210 00111 00
Q ss_pred cCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHh
Q psy5309 916 AAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQ 995 (1618)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~ 995 (1618)
..-.++++.|++|+||.+.+ |
T Consensus 507 ----------~~~~L~qDpDVLDTWFSS~L----------------------~--------------------------- 527 (995)
T KOG0432|consen 507 ----------KEFTLEQDPDVLDTWFSSGL----------------------W--------------------------- 527 (995)
T ss_pred ----------ccceeecCccHHHhhhhccc----------------------c---------------------------
Confidence 00113444566666655443 4
Q ss_pred hhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEee
Q psy5309 996 NHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1075 (1618)
Q Consensus 996 ~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l 1075 (1618)
||++..||+.. .|..++|-
T Consensus 528 -----------------------PfS~lGWP~~t--------------------------------------~d~~~fyP 546 (995)
T KOG0432|consen 528 -----------------------PFSTLGWPEET--------------------------------------KDFKNFYP 546 (995)
T ss_pred -----------------------cchhcCCcccc--------------------------------------ccHHhcCC
Confidence 34556676421 14445554
Q ss_pred cccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy5309 1076 ADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT 1155 (1618)
Q Consensus 1076 ~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~ 1155 (1618)
++....+.|+-|-| +.+++
T Consensus 547 ~sllETG~DILfFW----------------VaRMv--------------------------------------------- 565 (995)
T KOG0432|consen 547 LSLLETGHDILFFW----------------VARMV--------------------------------------------- 565 (995)
T ss_pred chhhhcCchHHHHH----------------HHHHH---------------------------------------------
Confidence 44444455555421 11110
Q ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCc
Q psy5309 1156 GFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW 1235 (1618)
Q Consensus 1156 ~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~ 1235 (1618)
+||..+ .++.|
T Consensus 566 ---------------------------------------------------mLg~kL------------------tG~lP 576 (995)
T KOG0432|consen 566 ---------------------------------------------------MLGLKL------------------TGELP 576 (995)
T ss_pred ---------------------------------------------------Hhhhhh------------------cCCCC
Confidence 123221 25678
Q ss_pred ccceeccccccc-cccccccccCCcCCHHHHHH-------------------------------------hcCcceeeee
Q psy5309 1236 PRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVK-------------------------------------KFSADGMRLC 1277 (1618)
Q Consensus 1236 p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~-------------------------------------~yGaD~lRl~ 1277 (1618)
++.|+.||+|.| +|||||||+||||||.|+|+ ++|+|||||.
T Consensus 577 F~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFa 656 (995)
T KOG0432|consen 577 FKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFA 656 (995)
T ss_pred chheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHH
Confidence 999999999999 99999999999999999997 2599999999
Q ss_pred hhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcc-cccCCCC
Q psy5309 1278 LADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQ-STLRTGS 1356 (1618)
Q Consensus 1278 l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 1356 (1618)
|++.+..++|++++...+.+..++.|+.| |...|++.... +.|.+. ...+...
T Consensus 657 L~s~~~~~~dInLDv~rv~g~r~FcNKlW------------Na~rF~l~~lg--------------~~~~p~~~~~~~~~ 710 (995)
T KOG0432|consen 657 LCSYTTQGRDINLDVLRVEGYRHFCNKLW------------NATRFALQRLG--------------ENFVPSPTEDLSGN 710 (995)
T ss_pred HHHccccCccccccHHHHhhHHHHHHHHH------------HHHHHHHHhcc--------------cCCCCCcccccCCC
Confidence 99999999999999999998777777653 11122211100 111111 1111111
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcch
Q psy5309 1357 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCP 1434 (1618)
Q Consensus 1357 ~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P 1434 (1618)
. ...|+||+++|+..++.+.++|+.|+|+.|..++. +|+- +++.|++..|
T Consensus 711 ~-~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~-~Fwl~~lCDVYlE~~K-------------------------- 762 (995)
T KOG0432|consen 711 E-SLVDEWILSRLAEAVEEVNESLEARNFHLATSALY-AFWLYDLCDVYLEATK-------------------------- 762 (995)
T ss_pred c-chhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhh--------------------------
Confidence 1 12899999999999999999999999999999985 8873 7777776655
Q ss_pred hhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHH
Q psy5309 1435 HVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVY 1514 (1618)
Q Consensus 1435 ~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw 1514 (1618)
.-++.... +....++.+|+.+|+..++||||||||+|||+|
T Consensus 763 -----------------------------p~l~~~~~----------~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~ 803 (995)
T KOG0432|consen 763 -----------------------------PLLWGDSE----------ALAYEARRVLYRCLDNGLRLLHPFMPFITEELW 803 (995)
T ss_pred -----------------------------HHhcCCcH----------HHHHHHHHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 33332210 011146788999999999999999999999999
Q ss_pred HHcCC-----CCceEeccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCCCcccccCCceEEE
Q psy5309 1515 QLLGK-----KGSIVKARWPEGG--PIDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGGGVGLVEKPTHATV 1587 (1618)
Q Consensus 1515 ~~l~~-----~~sv~~~~~p~~~--~~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~~~~~~~~~~~~~v 1587 (1618)
|.|+. ..||..++||... ..|++++++++.++++++.+|+...... ++...+..|
T Consensus 804 qrlP~r~~~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y~------------------l~~~~~~~v 865 (995)
T KOG0432|consen 804 QRLPRRKGSKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEYN------------------LSPKPRGSV 865 (995)
T ss_pred HhcccCCCCCCCceEecCCCchhcccCCHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCCceEE
Confidence 99973 2489999999432 4599999999999999999999887642 111235678
Q ss_pred EEcccCChh
Q psy5309 1588 WVAKTFPPW 1596 (1618)
Q Consensus 1588 ~~~~~~~~~ 1596 (1618)
+++.+.++-
T Consensus 866 ~~~~s~~~~ 874 (995)
T KOG0432|consen 866 FIASSDEED 874 (995)
T ss_pred EEecCCCcc
Confidence 887766554
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-104 Score=1009.84 Aligned_cols=581 Identities=30% Similarity=0.519 Sum_probs=426.0
Q ss_pred HHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCeEEeCCCC
Q psy5309 18 EVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKFFTTFPFP 97 (1618)
Q Consensus 18 ~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~ppP 97 (1618)
|||++|+++++|+...+.+ +++++|++++|||
T Consensus 1 k~~~~W~~~~~~~~~~~~~------------------------------------------------~~~~~f~i~~~PP 32 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKN------------------------------------------------KNKPKFFIHDPPP 32 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCT------------------------------------------------TTSGEEEEEE---
T ss_pred CHhHHHhhCCCcccccccC------------------------------------------------CCCCcEEEEeCCC
Confidence 7999999999999885432 2478899999999
Q ss_pred CCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q psy5309 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDP 177 (1618)
Q Consensus 98 ~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~ 177 (1618)
|+||.||||||+|++++|+++||+||+||+|++++||||||+|||..+++. +|...
T Consensus 33 y~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~------l~~~~------------------ 88 (601)
T PF00133_consen 33 YANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKK------LGIKE------------------ 88 (601)
T ss_dssp BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHH------TTTTS------------------
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHh------hcccc------------------
Confidence 999999999999999999999999999999999999999999999998863 22210
Q ss_pred hhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceeecCCChhh
Q psy5309 178 VIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFF 257 (1618)
Q Consensus 178 ~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y 257 (1618)
.+ .....+.+++++.| ++|++++++.|+++|++||+++||+++|.|+| |.|
T Consensus 89 ----------~~---------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d--~~y 139 (601)
T PF00133_consen 89 ----------KK---------------DRKDLGREEFREEC--REWAEEFIEEQKEQFKRLGVSIDWDREYFTMD--PEY 139 (601)
T ss_dssp ----------HH---------------HCSCSTHHHHHHHH--HHHHHHHHHHHHHHHHHTT--SECTCEEETTS--HHH
T ss_pred ----------cc---------------cccccccccchhhh--cchhhhhhhhhhhhhhheeeecccCCceEECC--ccH
Confidence 00 01234456666655 79999999999999999999999999999999 889
Q ss_pred hHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCCcEEEEeec
Q psy5309 258 DSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATL 337 (1618)
Q Consensus 258 ~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TT 337 (1618)
+++++|+|.+|+++|+||+|.+||+|||.|+|+|||+|+++++..+++.| ++|++. ++.+.+|+||||
T Consensus 140 ~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~--v~f~~~----------~~~~~~l~i~Tt 207 (601)
T PF00133_consen 140 EKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEVEYKEVKSPSIY--VKFPLK----------DGEEVYLVIWTT 207 (601)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGEEEEEEEEEEEE--EEEEES----------SSSEEEEEEEES
T ss_pred hHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhcccccccCceEE--EEEEec----------CccceEEEEEec
Confidence 99999999999999999999999999999999999999999988776665 455442 223359999999
Q ss_pred CccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccC
Q psy5309 338 RPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQ 417 (1618)
Q Consensus 338 rPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~ 417 (1618)
||||||||+||||||+..|+ . +++.+|++..... ++..+
T Consensus 208 rPeTl~~~~ai~vnP~~~Y~-~----~~~~~i~~~~~~~------------------------------------~~~~~ 246 (601)
T PF00133_consen 208 RPETLPGNTAIAVNPDFDYV-I----NGERYIVAKDLVE------------------------------------KLSKQ 246 (601)
T ss_dssp -GGGGGG-BEEEE-TTSEEE-E----TTEEEEEEHHHHH------------------------------------HHHTT
T ss_pred hhhHHhCCeeEEECCCccce-e----CCeeehHHHHHHH------------------------------------HHHhh
Confidence 99999999999999999999 2 3455566544211 11111
Q ss_pred CCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeec
Q psy5309 418 GFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSR 497 (1618)
Q Consensus 418 g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSR 497 (1618)
... .+.++++..+. |.++..+++
T Consensus 247 ~~~-------~~~~~~g~~L~--g~~~~~P~~------------------------------------------------ 269 (601)
T PF00133_consen 247 EKT-------KLEDFRGKELV--GLKYIHPLT------------------------------------------------ 269 (601)
T ss_dssp TSS-------SEEEEECHHHT--TSEEE-TTS------------------------------------------------
T ss_pred hhh-------cccccCcceec--CcEeccccc------------------------------------------------
Confidence 110 04455666665 666655443
Q ss_pred cccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhh
Q psy5309 498 TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAK 577 (1618)
Q Consensus 498 q~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~ 577 (1618)
|..+| ++++ ++|+++.|||+| |+ +|+|+
T Consensus 270 ----~~~~~--------------------vi~~--------------~~V~~~~GTGiV------~~--------~Pah~ 297 (601)
T PF00133_consen 270 ----GREVP--------------------VIPD--------------DFVDMDKGTGIV------HS--------APAHG 297 (601)
T ss_dssp ----SSSEE--------------------EEEE--------------TTS-SSSTTSEE------EE---------TTT-
T ss_pred ----cceeE--------------------EEcc--------------cccccccchhhh------hh--------cccCC
Confidence 11234 6665 789999999999 99 99999
Q ss_pred HHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCC
Q psy5309 578 LDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYD 657 (1618)
Q Consensus 578 ~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1618)
|+||.++.+ ++++
T Consensus 298 ------------~~Dy~~~~~----------~~l~--------------------------------------------- 310 (601)
T PF00133_consen 298 ------------PDDYEIGKK----------HNLP--------------------------------------------- 310 (601)
T ss_dssp ------------HHHHHHHHH----------HHHC---------------------------------------------
T ss_pred ------------HHHHHHHhh----------cCce---------------------------------------------
Confidence 999998876 4221
Q ss_pred CccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHHHHHHHHHhCCcc
Q psy5309 658 PVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKLLQKKIDIIGVAL 735 (1618)
Q Consensus 658 ~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~i~~~L~~~g~~~ 735 (1618)
.+.+|+ .+|.++ +|+|+|++|++||++|+++|+++|++
T Consensus 311 ~~~~id---------------------------------------~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l- 350 (601)
T PF00133_consen 311 IINPID---------------------------------------EDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLL- 350 (601)
T ss_dssp CGCCCC---------------------------------------CTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSE-
T ss_pred eeEecC---------------------------------------CCceEeecccccCCceeeeccHHHHHHHHHhhhh-
Confidence 122332 145555 68999999999999999999999975
Q ss_pred cCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-------ccCcceeec
Q psy5309 736 KAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-------LCDQWYLDY 808 (1618)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-------~~~QWfi~~ 808 (1618)
++.+++.|+||+|||+ +++||||++
T Consensus 351 ------------------------------------------------~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~ 382 (601)
T PF00133_consen 351 ------------------------------------------------LKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKY 382 (601)
T ss_dssp ------------------------------------------------EEEEEEEEEEEEETTTSCBEEEEEEEEEEEEH
T ss_pred ------------------------------------------------ccccccccccceecCCCCEEEecccceeEEec
Confidence 2345566677777665 899999999
Q ss_pred CCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEe-ehhHHHHHhhcC
Q psy5309 809 GEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYM-AYYTVAHLLQGG 887 (1618)
Q Consensus 809 ~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~-~~~ti~~~l~~~ 887 (1618)
.+||+++++++++|+|+|+.++++|.+||+|++||||||||+||||||+ |+|++|++..++. ..+.++.....
T Consensus 383 --~~~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPi---w~~~~~~~~~~~~~~~~~~~~~~~~- 456 (601)
T PF00133_consen 383 --DDWKKKALEALEKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPI---WYCEDCGEVLVIESTIELIADRVEK- 456 (601)
T ss_dssp --HHHHHHHHHHHHTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETE---EEETTSEEEECCGGHHHHHHHHSTH-
T ss_pred --HHhHHHHHhhcccceEEcccchhhhhhhccccccchhhccCCCCcccee---eecccCccccccccccccccccccc-
Confidence 6799999999999999999999999999999999999999999999999 9999876543322 11222222211
Q ss_pred ccCCCCCc-------cC--CCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchh
Q psy5309 888 TFRGENGN-------AL--NIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLT 958 (1618)
Q Consensus 888 ~~~g~~~~-------~l--~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~ 958 (1618)
.|.... .+ ........++++|+||+|+..+......+.. ++.+|++|+|+|++++|+||+++|+.
T Consensus 457 --~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~----~~~~~~~~~P~D~~~~G~D~~~~W~~ 530 (601)
T PF00133_consen 457 --EGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPEN----DREEFEYWYPVDLYIEGKDQIRGWFQ 530 (601)
T ss_dssp --HHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTC----SCHHHHHHSSBSEEEEEGGGTTTHHH
T ss_pred --ccccccccccccccccccccceEEeeeeccccccccCCcccccccccc----cchhccccCCcccccCCccchhhHHH
Confidence 011000 01 1112234579999999988632212222222 35778999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEE
Q psy5309 959 FFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRA 1038 (1618)
Q Consensus 959 f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~ 1038 (1618)
++++.|.+++ ++.| ++++++
T Consensus 531 ~~l~~~~~l~---------------------------------------------------------~~~p---fk~v~~ 550 (601)
T PF00133_consen 531 SSLFLSVALF---------------------------------------------------------GKEP---FKKVIT 550 (601)
T ss_dssp HHHHHHHHHS---------------------------------------------------------SSTS---BSEEEE
T ss_pred HhHhhccccc---------------------------------------------------------cCCc---hheeee
Confidence 9888777775 2223 589999
Q ss_pred cccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCccccccccc
Q psy5309 1039 NGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFV 1088 (1618)
Q Consensus 1039 hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs 1088 (1618)
||+++ .+|+|||||+||+|+|.+++++||||++|+|+++++++++|++||
T Consensus 551 hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 551 HGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp E--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred cccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 99999 789999999999999999999999999999999888999999986
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >KOG0434|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-99 Score=880.91 Aligned_cols=729 Identities=20% Similarity=0.300 Sum_probs=583.7
Q ss_pred hhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCC
Q psy5309 10 EYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDK 89 (1618)
Q Consensus 10 ~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1618)
.++++-|.|+.++|++.+.|+...+.. +++++
T Consensus 8 ~nfp~eEEkvle~W~e~~aF~~slk~s------------------------------------------------k~rp~ 39 (1070)
T KOG0434|consen 8 FNFPKEEEKVLEFWREIDAFHTSLKLS------------------------------------------------KGRPK 39 (1070)
T ss_pred CCCchhHHHHHHHHHHhhHHHHHHHhh------------------------------------------------CCCCc
Confidence 467788999999999999999887652 35899
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ 169 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~ 169 (1618)
|.+.++||++||.+|.||.+..||+|++.||..|+||.|.+.|||||||+|+|...+| ++||..
T Consensus 40 ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDK------kLgI~g---------- 103 (1070)
T KOG0434|consen 40 FTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDK------KLGITG---------- 103 (1070)
T ss_pred eeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeech------hcCCCC----------
Confidence 9999999999999999999999999999999999999999999999999999988776 356652
Q ss_pred CCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCcee
Q psy5309 170 TDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249 (1618)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~ 249 (1618)
++++.+-++.+| -.||| ..+-.+....+.++.|+|-|+|+++.|.
T Consensus 104 ------------------~~dV~kmGI~kY-----------N~ECR------~IVmrYssEWe~tv~RlGRWidF~ndYk 148 (1070)
T KOG0434|consen 104 ------------------RDDVMKMGIDKY-----------NNECR------KIVMRYSSEWEKTVERLGRWIDFDNDYK 148 (1070)
T ss_pred ------------------HHHHHHHhHHhH-----------hHHHH------HHHHHHHHHHHHHHHhhccceeccCCcc
Confidence 234444444443 13444 4455666777899999999999999999
Q ss_pred ecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhh--ccCCCCCCeeEEEEEEeeccCCccccccCCC
Q psy5309 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDR--ASGEGVGPQEYTLIKMRLVKPYPAKLCCLDS 327 (1618)
Q Consensus 250 T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 327 (1618)
||+ |.|.+.|+|+|++|+++|++|+|.+.++||..|.|+||+.|. .|++..+|+.++. |++. ++
T Consensus 149 Tmy--p~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~--F~li----------~~ 214 (1070)
T KOG0434|consen 149 TLY--PSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVA--FPLI----------GD 214 (1070)
T ss_pred eec--HHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEE--eecc----------CC
Confidence 999 889999999999999999999999999999999999999887 4667889988654 4443 23
Q ss_pred CCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEec
Q psy5309 328 KPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCT 407 (1618)
Q Consensus 328 ~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~ 407 (1618)
.+..+++|||||||+|+|.|+||||+..|+.+.-....+.+|+......+ ++ -.
T Consensus 215 ~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~-l~------k~------------------- 268 (1070)
T KOG0434|consen 215 PNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGE-LY------KN------------------- 268 (1070)
T ss_pred cceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHH-Hh------cC-------------------
Confidence 46789999999999999999999999999998543334556655442211 11 00
Q ss_pred cccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhh
Q psy5309 408 ERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASL 487 (1618)
Q Consensus 408 ~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~ 487 (1618)
...++++|++.+.|..+. |.+++|+.. +|..+.
T Consensus 269 -------------~~~~~~eiler~~G~~L~--g~kYeplF~--YF~~~~------------------------------ 301 (1070)
T KOG0434|consen 269 -------------PKNDNYEILERFQGAALV--GLKYEPLFP--YFAETF------------------------------ 301 (1070)
T ss_pred -------------cccccHHHHHhccccccc--CcccCccch--HHHHHh------------------------------
Confidence 012468999999999998 777776553 111110
Q ss_pred hccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCC
Q psy5309 488 NWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPF 567 (1618)
Q Consensus 488 ~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~ 567 (1618)
-..|+.++++ ++|+.+.|||+| |+
T Consensus 302 ---------------------------------~~~aFrvl~d--------------~yVt~~sGTGiV------H~--- 325 (1070)
T KOG0434|consen 302 ---------------------------------EEGAFRVLSD--------------DYVTEDSGTGIV------HQ--- 325 (1070)
T ss_pred ---------------------------------ccCceEEecc--------------CcEecCCCceee------ec---
Confidence 1126778765 899999999999 99
Q ss_pred CCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccc
Q psy5309 568 PPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINC 647 (1618)
Q Consensus 568 ~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1618)
+|+.| ..||++|.. |||
T Consensus 326 -----AP~FG------------e~Dy~~c~~----------------------------------------~gi------ 342 (1070)
T KOG0434|consen 326 -----APAFG------------EEDYRACVA----------------------------------------NGI------ 342 (1070)
T ss_pred -----CCccC------------hhhHHHHHH----------------------------------------cCc------
Confidence 99999 999999976 243
Q ss_pred eeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHHHHHHH
Q psy5309 648 VIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEVKKLLQ 725 (1618)
Q Consensus 648 ~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a~~~i~ 725 (1618)
+.-+..++..|++ +|.++ +..|+|..|+||.+.||
T Consensus 343 ------I~~d~~~~cpVDe-------------------------------------~G~~Tsev~dfaG~YVKDaDK~Ii 379 (1070)
T KOG0434|consen 343 ------IRKDSLPPCPVDE-------------------------------------SGLFTSEVTDFAGQYVKDADKLII 379 (1070)
T ss_pred ------ccCCCCCCCcccc-------------------------------------CCccccccccccceeeccchHHHH
Confidence 1112233444443 45555 67899999999999999
Q ss_pred HHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe------
Q psy5309 726 KKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA------ 799 (1618)
Q Consensus 726 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~------ 799 (1618)
+.|++.|.| +....++||||.|||+
T Consensus 380 ~~lk~~g~l-------------------------------------------------v~~~~i~HsYPFCWRSDTPLiY 410 (1070)
T KOG0434|consen 380 RSLKASGRL-------------------------------------------------VKASQITHSYPFCWRSDTPLIY 410 (1070)
T ss_pred HHHHhcCce-------------------------------------------------eeeeeeeeccCceecCCChHHH
Confidence 999999854 4556899999999996
Q ss_pred -ccCcceeecCCchHHHHHHHHHhcccccChHHHH-HHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeeh
Q psy5309 800 -LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRR-NFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAY 877 (1618)
Q Consensus 800 -~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~-~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~ 877 (1618)
+.+.||++. +++.+++++..++..|+|+.+|. ||.+||++.+||.|||+|+||||||. |+.+ |.+..++.
T Consensus 411 raVPsWFVrV--k~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpL---WVSd---D~eevVci 482 (1070)
T KOG0434|consen 411 RAVPSWFVRV--KNIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPL---WVSD---DYEEVVCI 482 (1070)
T ss_pred hhccHhhhhH--HHHHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcce---EEcc---CCceEEEe
Confidence 678888888 78888888888899999999998 99999999999999999999999999 9997 67788999
Q ss_pred hHHHHHhhcCccCCCCCccCC--------CC------cCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhcccccc
Q psy5309 878 YTVAHLLQGGTFRGENGNALN--------IK------AEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPV 943 (1618)
Q Consensus 878 ~ti~~~l~~~~~~g~~~~~l~--------~~------~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~ 943 (1618)
++++++.+ ++|.+..++. |+ .-.++.+++|.||-||+.+-++.+.|.++ ++.|+.-||+
T Consensus 483 gSi~eLEe---LSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFen----k~~fe~~fPa 555 (1070)
T KOG0434|consen 483 GSIKELEE---LSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFEN----KEEFEENFPA 555 (1070)
T ss_pred ccHHHHHH---hcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccc----hHHHhhcCch
Confidence 99999985 6777655542 11 12456789999999999554488888886 5778888999
Q ss_pred ceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhh
Q psy5309 944 DLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTA 1023 (1618)
Q Consensus 944 Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~ 1023 (1618)
|+.-+|.||+|| | +++++ ..+++
T Consensus 556 dFIaEGlDQTRG------------W------------------------------FYTL~---------------VlsT~ 578 (1070)
T KOG0434|consen 556 DFIAEGLDQTRG------------W------------------------------FYTLL---------------VLSTA 578 (1070)
T ss_pred Hhhhhccccccc------------h------------------------------hhHHH---------------HHHHH
Confidence 999999999999 4 12221 24566
Q ss_pred ccCCCCCCcCcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCc-ccccccccHHHHHH----HHh
Q psy5309 1024 IWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGD-SVEDANFVESMADA----GIL 1097 (1618)
Q Consensus 1024 ~~p~~~~~~pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~-~~~D~~fs~~~~~~----~~~ 1097 (1618)
+|++.| +++++++|.|+ .+|+|||||+.|+-+|..++++||||++|+||.++.. ..+.+.|.++.+.. .+.
T Consensus 579 LF~kpp---fkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~l 655 (1070)
T KOG0434|consen 579 LFGKPP---FKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLL 655 (1070)
T ss_pred HcCCCc---chheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhhh
Confidence 676544 79999999999 8999999999999999999999999999999997732 35789999887654 556
Q ss_pred hHHHHHHHHHHHHHhcccC--------CCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1098 RLYTFIEWVKEILATQSTL--------RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRE 1169 (1618)
Q Consensus 1098 kl~N~~~~l~~~l~~~~~~--------~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~ 1169 (1618)
..+|.++|+.++....... ......+..|+|+++.++.++..+.+.|+.|++..++-.++-++....|||+.
T Consensus 656 PW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR 735 (1070)
T KOG0434|consen 656 PWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIR 735 (1070)
T ss_pred hhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhhee
Confidence 7899999998876543211 11223466899999999999999999999999999999977777789999998
Q ss_pred Hhcc----cCc-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCC
Q psy5309 1170 LTAA----EGG-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK 1210 (1618)
Q Consensus 1170 ~~k~----~~~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgk 1210 (1618)
..+. .++ .+..+|.++|..++++|+||.||++|.+|+.|.+
T Consensus 736 ~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 736 FNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred hhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 7643 222 2345688999999999999999999999999854
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-97 Score=928.40 Aligned_cols=726 Identities=28% Similarity=0.437 Sum_probs=564.6
Q ss_pred HHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCeEE
Q psy5309 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKFFT 92 (1618)
Q Consensus 13 ~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v 92 (1618)
.+||+|||++|+++++|+.+.+.. + .+||+|
T Consensus 8 ~~IE~KWQ~~W~e~~~Fe~~~d~~-----~--------------------------------------------~~Kfyv 38 (814)
T COG0495 8 REIEEKWQKRWEEAKVFEADEDSD-----K--------------------------------------------PEKFYV 38 (814)
T ss_pred HHHHHHHHHHHHhcCCcccCCCCC-----C--------------------------------------------CCceEE
Confidence 589999999999999999887652 1 145666
Q ss_pred eCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy5309 93 TFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDK 172 (1618)
Q Consensus 93 ~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~ 172 (1618)
+.++|||||.|||||+||+|++|++|||+||+||||++|||||+.|+|++..|.+. |
T Consensus 39 l~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~-------~---------------- 95 (814)
T COG0495 39 LVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI-------G---------------- 95 (814)
T ss_pred EeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh-------C----------------
Confidence 66667788889999999999999999999999999999999999999999999862 1
Q ss_pred CCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceeecC
Q psy5309 173 DDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTD 252 (1618)
Q Consensus 173 ~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~d 252 (1618)
. +|..|++++++.+++||++||+++||+|+|.|+|
T Consensus 96 ------------------------------------~---------~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~D 130 (814)
T COG0495 96 ------------------------------------T---------DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCD 130 (814)
T ss_pred ------------------------------------C---------ChHHHHHHHHHHHHHHHHHhCCccccccceecCC
Confidence 1 3678999999999999999999999999999999
Q ss_pred CChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccC------CCCCCeeEEEEEEeeccCCccccccCC
Q psy5309 253 SNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASG------EGVGPQEYTLIKMRLVKPYPAKLCCLD 326 (1618)
Q Consensus 253 ~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~------~~~~~~~y~~~~~~~~~~~~~~~~~~~ 326 (1618)
|.|.++++|+|.+|+++|++|++.++|+|||.|+|+|+||||..+ ..+.+.++++++|++++.....+++
T Consensus 131 --p~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~-- 206 (814)
T COG0495 131 --PEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDD-- 206 (814)
T ss_pred --ccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhh--
Confidence 779999999999999999999999999999999999999999988 7899999999999987632222211
Q ss_pred CCCcEEEEeecCccccccCceEEeCCCCCceeecccCCc--cEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEE
Q psy5309 327 SKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSK--PVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVF 404 (1618)
Q Consensus 327 ~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~--~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~ 404 (1618)
....+|.+|||+.|.|..||+|+..|.+..+..+. ..-+-+-+.+++|++|...+.+.|+|..+.-...
T Consensus 207 ----l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~----- 277 (814)
T COG0495 207 ----LDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVT----- 277 (814)
T ss_pred ----hhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhc-----
Confidence 34566779999999999999999998887654342 2344556789999999999888888774311000
Q ss_pred EeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHh
Q psy5309 405 VCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFG 484 (1618)
Q Consensus 405 i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~ 484 (1618)
T Consensus 278 -------------------------------------------------------------------------------- 277 (814)
T COG0495 278 -------------------------------------------------------------------------------- 277 (814)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccC
Q psy5309 485 ASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKS 564 (1618)
Q Consensus 485 ~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~ 564 (1618)
-| .+ .++ +.||++..+||+| ++
T Consensus 278 --------------------~~------------~~------~~~--------------a~fv~~~~~~~~~------~~ 299 (814)
T COG0495 278 --------------------NP------------QT------PLV--------------AEFVDECKGTGVV------ES 299 (814)
T ss_pred --------------------Cc------------cc------hhH--------------HHHHHHhcCCCce------ee
Confidence 01 00 000 1578888999999 88
Q ss_pred CCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCccc
Q psy5309 565 APFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALN 644 (1618)
Q Consensus 565 ~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (1618)
+|+|. |.|+..++- | +..
T Consensus 300 --------~~~~~------------~k~gv~~g~----------~--------------------------------a~~ 317 (814)
T COG0495 300 --------VPAHA------------EKDGVFLGG----------Y--------------------------------AIN 317 (814)
T ss_pred --------eeccC------------CCcceeccc----------c--------------------------------ccC
Confidence 88888 777665553 1 000
Q ss_pred ccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHH
Q psy5309 645 INCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLL 724 (1618)
Q Consensus 645 ~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i 724 (1618)
. ..-+.+||+..+.++..++.. ..|+|.++++ ..++.|+ .|.-.++.|++..+. .|+.+.+ ++.+
T Consensus 318 -------p-~~~e~iPi~~a~~vl~~ygtg--avm~vpahd~-rd~efA~--~y~l~i~~vi~~~~~-~~~~~~~-~~g~ 382 (814)
T COG0495 318 -------P-VNGEKIPVWIANYVLMEYGTG--AVMGVPAHDE-RDLEFAT--KYKLPIKKVIMPEGT-VGKKVYE-GEGV 382 (814)
T ss_pred -------C-CCCCcCCEEEeCccccccccc--ceecCCCCCc-hhhHHHH--hcCCCeEEEEecCCC-cccceec-cCce
Confidence 0 112578999999888888877 6799999984 5689999 899999999887543 5555555 4444
Q ss_pred HHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcc
Q psy5309 725 QKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQW 804 (1618)
Q Consensus 725 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QW 804 (1618)
|+..|- .....++ +.. +.|||| +.....+||
T Consensus 383 ---linS~~--------~~gl~~e-~a~------------~~~~~~-------------------------l~~~~~~q~ 413 (814)
T COG0495 383 ---LINSGG--------LDGLDYE-EAK------------VKIRCG-------------------------LVKRGLGQW 413 (814)
T ss_pred ---Eecccc--------ccCcchh-HHH------------HHHHHh-------------------------HHHhcCCce
Confidence 333321 1111111 111 334443 222247899
Q ss_pred eeecCCchH-HHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCc--ccCCCccccccccCCcceEeehhHHH
Q psy5309 805 YLDYGEPTW-KAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGT--KLPWDEQWLIESLSDSTIYMAYYTVA 881 (1618)
Q Consensus 805 fi~~~~~~~-k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~--PIP~d~~w~~e~~~D~~iy~~~~ti~ 881 (1618)
|++|...+| +.+...+...|.++|...+..+..-+++|+.|.+.|.++-|+ |||+|+.|++++|+|+++|+..+|++
T Consensus 414 ~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~ 493 (814)
T COG0495 414 FVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMD 493 (814)
T ss_pred EEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhh
Confidence 999999999 999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHH
Q psy5309 882 HLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFI 961 (1618)
Q Consensus 882 ~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~l 961 (1618)
+.+.+ ..+..+++|++|.. ++..+++.|+||+|+|+|++|+||+.+||+|+|
T Consensus 494 ~~~~s---------------swy~~r~~d~~~~~-------------~~~~~~e~~~yW~PVD~yigG~ehavlHLly~r 545 (814)
T COG0495 494 TFIDS---------------SWYYLRFFDPIFLG-------------ELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFR 545 (814)
T ss_pred Hhccc---------------ccccHhhcChhcCc-------------cchhcHHHHhcccChheeecchhHHHHHHHHHH
Confidence 99853 13445555555542 133457899999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccc
Q psy5309 962 YIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGH 1041 (1618)
Q Consensus 962 f~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~ 1041 (1618)
|+|++|++ ...||.+ +| +++++++||
T Consensus 546 F~Hkal~d--~g~~p~~-------------------------------------------------ep---f~~L~~qGm 571 (814)
T COG0495 546 FFHKALFD--EGLVPKD-------------------------------------------------EP---FKKLITQGM 571 (814)
T ss_pred HHHHHhcc--cCcCCCc-------------------------------------------------cc---hhhhhccce
Confidence 99999962 1222211 12 588999999
Q ss_pred eee-CCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCC
Q psy5309 1042 LLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGS 1120 (1618)
Q Consensus 1042 vl~-~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~ 1120 (1618)
|+. +|+|||||+||+|+|++++++||||++|+|+|+++|+.+|.+|+++.++...+.|.++.+++.+....... ...
T Consensus 572 Vl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~--~~~ 649 (814)
T COG0495 572 VLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVE--ELT 649 (814)
T ss_pred EEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcccc--ccc
Confidence 997 89999999999999999999999999999999999999999999988776665555555555444321100 001
Q ss_pred CCC-cchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCC
Q psy5309 1121 QDS-FNDKVFLSEMNLKIKETEDHYTK-MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCP 1198 (1618)
Q Consensus 1121 ~~~-~~D~~~l~~l~~~i~~v~~~~e~-~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P 1198 (1618)
... ..++|+++ ++++.+++.++. +.|+.|++. +|++.+.+.+|....... ..++.+++..+++||+||+|
T Consensus 650 ~~~~~~~~~~~h---~~~~~v~~~~e~~~~~nt~i~~-~m~l~N~l~~~~~~~~~~----~~~l~~~l~~~v~lLaP~aP 721 (814)
T COG0495 650 KEQGKEDRWLLH---RTIKKVTEDFEARQTFNTAIAA-LMELLNALRKYLRRTEGD----RKVLREALETWVRLLAPFAP 721 (814)
T ss_pred chhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccch----HHHHHHHHHHHHHHhccccc
Confidence 111 34555555 555666666666 778888887 899999999998764322 27888999999999999999
Q ss_pred CchhHHHHHhCCCccccccchhhhhhhcccCCCCC
Q psy5309 1199 HVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPE 1233 (1618)
Q Consensus 1199 ~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~ 1233 (1618)
|+|||+|+.+|... ++..+.||..++
T Consensus 722 H~aEElW~~lg~~~---------~v~~~~wP~~de 747 (814)
T COG0495 722 HIAEELWEELGNEG---------FVSNAPWPEPDE 747 (814)
T ss_pred HHHHHHHHHhcCCC---------ceeeCCCCCCCh
Confidence 99999999999532 245667776543
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-94 Score=938.20 Aligned_cols=671 Identities=22% Similarity=0.345 Sum_probs=482.5
Q ss_pred hHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCeE
Q psy5309 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKFF 91 (1618)
Q Consensus 12 ~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 91 (1618)
+.++|++||++|+++++|++..+. ++++|+
T Consensus 3 ~~~iE~kwq~~W~~~~~f~~~~~~--------------------------------------------------~k~k~~ 32 (842)
T TIGR00396 3 HIEIEEKWQQKWKENKVFKFTDDS--------------------------------------------------NKPKYY 32 (842)
T ss_pred HHHHHHHHHHHHHhcCCcccCCCC--------------------------------------------------CCCCEE
Confidence 578999999999999999876532 367899
Q ss_pred EeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy5309 92 TTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTD 171 (1618)
Q Consensus 92 v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~ 171 (1618)
++.+||||||.|||||+++++++|+++||+||+||+|++++||||||+|||..|++ .|+.
T Consensus 33 v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~-------~g~~------------- 92 (842)
T TIGR00396 33 ILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIK-------RGIH------------- 92 (842)
T ss_pred EEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHH-------cCCC-------------
Confidence 99999999999999999999999999999999999999999999999999988764 1221
Q ss_pred CCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceeec
Q psy5309 172 KDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITT 251 (1618)
Q Consensus 172 ~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~ 251 (1618)
+.+|++++++.++++|++||+++||+++|.|+
T Consensus 93 ------------------------------------------------p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~ 124 (842)
T TIGR00396 93 ------------------------------------------------PAKWTYENIANMKKQLQALGFSYDWDREIATC 124 (842)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHhCCcccCCCCcccC
Confidence 23567788889999999999999999999999
Q ss_pred CCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCC---CCCCee----EEEEEEeeccCCcc----
Q psy5309 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGE---GVGPQE----YTLIKMRLVKPYPA---- 320 (1618)
Q Consensus 252 d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~---~~~~~~----y~~~~~~~~~~~~~---- 320 (1618)
+ |.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+||.... .-+++. ...+.|++.. |..
T Consensus 125 d--~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~-~~~~l~~ 201 (842)
T TIGR00396 125 D--PEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITA-YAEELLN 201 (842)
T ss_pred C--HHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhh-hHHHHHH
Confidence 9 8899999999999999999999999999999999999999995421 111111 1122233211 110
Q ss_pred ----------------------------ccccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEec
Q psy5309 321 ----------------------------KLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAA 372 (1618)
Q Consensus 321 ----------------------------~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~ 372 (1618)
.+ .+.+.+.+|+|||||||||||++||||||++.|+......+..+ +
T Consensus 202 ~l~~~~~wp~~v~~~q~~wig~s~g~~i~f-~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v----~ 276 (842)
T TIGR00396 202 DLEELDHWPESVKEMQRNWIGKSEGVEITF-KIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKV----A 276 (842)
T ss_pred HHhhhccccHHHHHHHHhcccccceEEEEE-EcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHH----H
Confidence 00 01223468999999999999999999999998876521000000 0
Q ss_pred ccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccce
Q psy5309 373 TLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQW 452 (1618)
Q Consensus 373 ~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QW 452 (1618)
.+... . ..-.+. ...++.+.++..+ .|..+.++++
T Consensus 277 ~~~~~--------------------------------~---~~~~~~-----~~~~~~~~~~g~~--~g~~~~~P~~--- 311 (842)
T TIGR00396 277 AFIKK--------------------------------I---LQKTTT-----ERTKETKLKKGVF--TGIKAIHPLT--- 311 (842)
T ss_pred HHHHH--------------------------------H---hccCch-----hhhhhhcccccEe--cCCEEECCCC---
Confidence 00000 0 000000 0011122233333 2555555554
Q ss_pred eeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccc
Q psy5309 453 YLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLL 532 (1618)
Q Consensus 453 fl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~ 532 (1618)
|..+| ++++
T Consensus 312 -------------------------------------------------~~~ip--------------------i~~~-- 320 (842)
T TIGR00396 312 -------------------------------------------------GEKIP--------------------IWVA-- 320 (842)
T ss_pred -------------------------------------------------CCEeE--------------------EEEe--
Confidence 23356 4443
Q ss_pred cCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhh
Q psy5309 533 QGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIE 612 (1618)
Q Consensus 533 ~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~ 612 (1618)
++|+++.|||.| |+ +|+|+ +.||.++.+ |
T Consensus 321 ------------~~V~~~~GTG~V------~~--------~Pahd------------~~D~~~~~k----------~--- 349 (842)
T TIGR00396 321 ------------NYVLASYGTGAV------MG--------VPAHD------------ERDFEFAQK----------Y--- 349 (842)
T ss_pred ------------CcccCCCCCCeE------EE--------cCCCC------------HHHHHHHHH----------h---
Confidence 789999999999 99 99999 999987765 5
Q ss_pred hccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHH
Q psy5309 613 SLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQE 692 (1618)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~ 692 (1618)
|++ .+++|+.++ . +.+
T Consensus 350 ---------------------------~L~---------------i~~vi~~~~--~----------------~~~---- 365 (842)
T TIGR00396 350 ---------------------------KLP---------------IKVVIDPAG--K----------------NLK---- 365 (842)
T ss_pred ---------------------------CCC---------------cceeeCCcc--c----------------ccc----
Confidence 332 123333221 0 000
Q ss_pred HHHHHHhhcccceeee-ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCch
Q psy5309 693 AKELVYLKGFYDGIML-VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771 (1618)
Q Consensus 693 ~~~~~~~~~~~~G~~~-~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~ 771 (1618)
+..|. .+|+|+ .|+|+|+++++||++|++.|+++|+..+
T Consensus 366 --~~~~~---~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~----------------------------------- 405 (842)
T TIGR00396 366 --TQAFT---EDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKR----------------------------------- 405 (842)
T ss_pred --ccccc---CCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCc-----------------------------------
Confidence 01132 378887 6899999999999999999999994200
Q ss_pred hhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccC
Q psy5309 772 DYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTY 851 (1618)
Q Consensus 772 d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr 851 (1618)
+ +.+ +++||||||||
T Consensus 406 ----------------------~-----------v~y--------------------------------rlrDW~ISRQR 420 (842)
T TIGR00396 406 ----------------------K-----------VNY--------------------------------RLRDWLFSRQR 420 (842)
T ss_pred ----------------------e-----------EEe--------------------------------ecccceeeccc
Confidence 0 011 47899999999
Q ss_pred CCCcccCCCccccccccCCcceEeehh-----HHHHHhhcCccCCCCCccC-------C------CCcCCCCCcceeEEe
Q psy5309 852 GLGTKLPWDEQWLIESLSDSTIYMAYY-----TVAHLLQGGTFRGENGNAL-------N------IKAEDLTPEVWDYVF 913 (1618)
Q Consensus 852 ~WG~PIP~d~~w~~e~~~D~~iy~~~~-----ti~~~l~~~~~~g~~~~~l-------~------~~~~~l~~~~~d~~f 913 (1618)
+||+|||+ |+|++|+ .+.... .+...+. ..|....++ + ..+....+|++|.||
T Consensus 421 yWG~PIPi---~~~~~~g---~~~v~~~~lp~~l~~~~~---~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~ 491 (842)
T TIGR00396 421 YWGEPIPI---IHCEDGG---AVPVPEEDLPVILPELVN---YDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFA 491 (842)
T ss_pred ccCCceEE---EEECCCC---eEeCcchhcchhhhhhhh---ccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcc
Confidence 99999999 9998653 222111 1111111 112111110 0 123457789999999
Q ss_pred cccCCC-----CCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchh
Q psy5309 914 FKAAPF-----PPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN 988 (1618)
Q Consensus 914 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~ 988 (1618)
+|+=.+ +.....+ ..++.+++|||+|+|++|.||+.+||.|+||||++|. +.|.+
T Consensus 492 dSswy~~r~~~p~~~~~~-----~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~------------~~~~~--- 551 (842)
T TIGR00396 492 GSSWYYLRYLDPKNTDQP-----FDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLY------------DIGYV--- 551 (842)
T ss_pred cCCHHHHHhhCCCCcCCC-----cChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHH------------hcccc---
Confidence 976100 1000111 1245689999999999999999999999999998884 11110
Q ss_pred hhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceee-----CCc----------------
Q psy5309 989 SAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-----NSA---------------- 1047 (1618)
Q Consensus 989 e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~-----~G~---------------- 1047 (1618)
.+++| ++++++||||+. +|+
T Consensus 552 ------------------------------------~~~~P---fk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~ 592 (842)
T TIGR00396 552 ------------------------------------STKEP---FKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDK 592 (842)
T ss_pred ------------------------------------CCCcc---HHHHhccceEEeeeecCCCCccChhhhccccccccc
Confidence 12223 689999999985 788
Q ss_pred -----------cceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHHHHHhc
Q psy5309 1048 -----------KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKEILATQ 1113 (1618)
Q Consensus 1048 -----------KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~~l~~~ 1113 (1618)
|||||+||+|+|.+++++||||++|||+++++++.+|++|+++.++ ..+++++|+++++...+...
T Consensus 593 ~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~ 672 (842)
T TIGR00396 593 SGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGK 672 (842)
T ss_pred cCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999988899999999998875 45789999998876655321
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHh
Q psy5309 1114 STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKML-FKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192 (1618)
Q Consensus 1114 ~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~-f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~l 1192 (1618)
... ........|+|++++++.++++++++|++|. |+.|++. ++++.+.++.|.. ..++.+++..+++|
T Consensus 673 ~~~-~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~-l~~f~n~L~~~~~---------~~~l~~~l~~ll~l 741 (842)
T TIGR00396 673 TYL-TPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISA-MMILLNALYKAKK---------DALYLEYLKGFLTV 741 (842)
T ss_pred ccC-CcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhhh---------HHHHHHHHHHHHHH
Confidence 111 1123456899999999999999999999988 9999988 6788776666532 14688999999999
Q ss_pred cCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1193 LCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1193 LaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
|+||+||+|||||+.||.+.. |+|.+.||..
T Consensus 742 LaPf~PhiaEElW~~l~~~~~--------sv~~~~wP~~ 772 (842)
T TIGR00396 742 LSPFAPHLAEELWEKLGSEPF--------IIKQAKWPKV 772 (842)
T ss_pred HhhhhhHHHHHHHHHhCCCCC--------eeecCCCCCC
Confidence 999999999999999985422 3556667653
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-94 Score=940.02 Aligned_cols=683 Identities=20% Similarity=0.302 Sum_probs=463.3
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
+.-.+.+||++||++|+++++|++..+.. .++
T Consensus 78 ~~y~~~~iE~kwq~~W~e~~~f~~~~~~~------------------------------------------------~~k 109 (963)
T PLN02563 78 RAYPFHEIEPKWQRYWEENRTFRTPDDVD------------------------------------------------TSK 109 (963)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccccccc------------------------------------------------CCC
Confidence 34456899999999999999998764321 246
Q ss_pred CCeEEeCCCCCCCCc-chhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGR-LHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~-LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
++|+|+.+||||||. |||||+++++++|+++||+||+||+|++++||||||+|||..|.+ .|+.
T Consensus 110 ~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~-------~g~~-------- 174 (963)
T PLN02563 110 PKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIE-------TGTH-------- 174 (963)
T ss_pred CCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHH-------cCCC--------
Confidence 789999999999996 999999999999999999999999999999999999999987653 1211
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccC
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRR 246 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~ 246 (1618)
|..|+.+.++.++++|++||+++||++
T Consensus 175 -----------------------------------------------------p~~~~~~~i~~~~~q~~~lG~s~DW~r 201 (963)
T PLN02563 175 -----------------------------------------------------PKITTLKNIARFRSQLKSLGFSYDWDR 201 (963)
T ss_pred -----------------------------------------------------hHHhHHHHHHHHHHHHHHhCcEeeCCC
Confidence 234566777888999999999999999
Q ss_pred ceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCC-CCCCee-------------------
Q psy5309 247 TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGE-GVGPQE------------------- 306 (1618)
Q Consensus 247 ~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~------------------- 306 (1618)
+|.|++ |.|.+.++|+|.+|+++|+||++.++|+|||.|+|+||++||+++. ..+.+.
T Consensus 202 ~~~T~d--p~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~ 279 (963)
T PLN02563 202 EISTTE--PEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADR 279 (963)
T ss_pred CeecCC--HHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHH
Confidence 999999 8899999999999999999999999999999999999999998752 122111
Q ss_pred --------------------------EEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCCCceeec
Q psy5309 307 --------------------------YTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALS 360 (1618)
Q Consensus 307 --------------------------y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~ 360 (1618)
...++|++.+. .....+.+|+|||||||||||+++|||||++.|+...
T Consensus 280 L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~------~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~ 353 (963)
T PLN02563 280 LLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDG------EGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSL 353 (963)
T ss_pred HHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCc------cccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhh
Confidence 22233332100 0000246899999999999999999999999988642
Q ss_pred ccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceec
Q psy5309 361 CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRS 440 (1618)
Q Consensus 361 ~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~ 440 (1618)
. ..+.-..+.. |... .... +..+ +. .....++..+ +
T Consensus 354 ~-~~~~~~~v~~--------------------y~~~------------------~~~~-~~~~-~~-~~~~~k~g~~--~ 389 (963)
T PLN02563 354 T-TAEQKEAVEE--------------------YVDA------------------ASRK-SDLE-RT-ELQKEKTGVF--T 389 (963)
T ss_pred h-cccchHHHHH--------------------HHHH------------------Hhch-hHHh-hh-hccceecccc--c
Confidence 1 0000000000 0000 0000 0000 00 0000011111 1
Q ss_pred CCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCc
Q psy5309 441 GDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDST 520 (1618)
Q Consensus 441 g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~ 520 (1618)
|..++.+++ |..+|
T Consensus 390 g~~~~~P~~----------------------------------------------------~~~iP-------------- 403 (963)
T PLN02563 390 GSYAINPAT----------------------------------------------------GEAIP-------------- 403 (963)
T ss_pred CcEEeccCC----------------------------------------------------CCeeE--------------
Confidence 222222221 33356
Q ss_pred ccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceecccccc
Q psy5309 521 IYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVS 600 (1618)
Q Consensus 521 i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~ 600 (1618)
++.+ ++|+++.|||.| |+ +|+|+ +.||.++.+
T Consensus 404 ------I~~a--------------d~V~~~~GTGaV------m~--------~PaHd------------~~D~~~a~k-- 435 (963)
T PLN02563 404 ------IWVA--------------DYVLGSYGTGAI------MA--------VPAHD------------TRDFEFAQK-- 435 (963)
T ss_pred ------EEEe--------------cccCCCCCCCeE------EE--------cCCCC------------HHHHHHHHH--
Confidence 4433 789999999999 99 99999 999987765
Q ss_pred CCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhc
Q psy5309 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLK 680 (1618)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~ 680 (1618)
| ||+. +++|+.++ ++
T Consensus 436 --------~------------------------------~Lpi---------------~~vI~~~d-~~----------- 450 (963)
T PLN02563 436 --------F------------------------------DLPI---------------KWVVKPAD-GN----------- 450 (963)
T ss_pred --------c------------------------------CCCc---------------eeeeccCc-cc-----------
Confidence 5 3321 12221100 00
Q ss_pred cCCcccHHHHHHHHHHHHhhcccceeee-ecc----cCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccc
Q psy5309 681 IQSQNDKDKLQEAKELVYLKGFYDGIML-VGE----FKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIRE 755 (1618)
Q Consensus 681 ~~~~~d~~~~~~~~~~~~~~~~~~G~~~-~~~----~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 755 (1618)
..+ .+..|.+ +|+|. .|+ |.|+.+++|+++|+++|++.|++.
T Consensus 451 ---~~~-------~~~~y~~---~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~-------------------- 497 (963)
T PLN02563 451 ---EDD-------AEKAYTG---EGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGK-------------------- 497 (963)
T ss_pred ---ccc-------ccccccC---ceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCC--------------------
Confidence 000 0112321 58775 454 999999999999999999999420
Q ss_pred cCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHH
Q psy5309 756 DKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNF 835 (1618)
Q Consensus 756 ~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~ 835 (1618)
+.++|
T Consensus 498 ------------------------------------------------------------------~~v~y--------- 502 (963)
T PLN02563 498 ------------------------------------------------------------------KKVNY--------- 502 (963)
T ss_pred ------------------------------------------------------------------CeeEe---------
Confidence 00111
Q ss_pred HHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhh---cCccCCCCCccC-------------CC
Q psy5309 836 GASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQ---GGTFRGENGNAL-------------NI 899 (1618)
Q Consensus 836 ~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~---~~~~~g~~~~~l-------------~~ 899 (1618)
+++||||||||+||+|||+ |+|+.|+ +++++.-.-+...+. .-...|....++ ..
T Consensus 503 -----~lrDW~ISRQRyWG~PIPi---~~c~~cg-~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg 573 (963)
T PLN02563 503 -----KLRDWLFARQRYWGEPIPV---VFLEDSG-EPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSG 573 (963)
T ss_pred -----cCCCceEeeecccCCceEE---EEEcCCC-cEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCC
Confidence 5899999999999999999 9998774 344432211111111 000112111111 02
Q ss_pred CcCCCCCcceeEEecccCCCCCCCCCCh---hhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCC
Q psy5309 900 KAEDLTPEVWDYVFFKAAPFPPKCRVPK---AKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWP 976 (1618)
Q Consensus 900 ~~~~l~~~~~d~~f~~~~~~~~~~~~~~---~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp 976 (1618)
.+..+.+|++|.||.|.--+..++ .+. ..++ ++.+++|+|+|+|++|.||+.+||+|+||+|++|.
T Consensus 574 ~~~~RetDtmDtw~~Sswy~~r~~-~p~~~~~~~~--~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~-------- 642 (963)
T PLN02563 574 KPARRETNTMPQWAGSCWYYLRFM-DPKNSNALVD--KEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLY-------- 642 (963)
T ss_pred CCcEECCCcCCchhhccHHHHHHh-CCCccccccC--HHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHH--------
Confidence 345667889999986532111010 111 1111 23357899999999999999999999999999983
Q ss_pred ccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEcccee----------eCC
Q psy5309 977 RGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL----------LNS 1046 (1618)
Q Consensus 977 ~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl----------~~G 1046 (1618)
+.|.+...+ | ++++++||||+ .+|
T Consensus 643 ----~~g~~~~~e---------------------------------------P---fk~ll~qGmVl~~~~~~~~~d~~G 676 (963)
T PLN02563 643 ----DIGVVSTKE---------------------------------------P---FQCLVNQGMILGEVEYTAFKDSDG 676 (963)
T ss_pred ----HhhccCCcc---------------------------------------c---HHHHhccceeecCccccceecCCC
Confidence 333332222 2 34555555554 223
Q ss_pred ---------------------------------------------ccceeccCcccChHHHHhhcCccceEEeecccCcc
Q psy5309 1047 ---------------------------------------------AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1081 (1618)
Q Consensus 1047 ---------------------------------------------~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~ 1081 (1618)
+|||||+||+|+|.++|++||||++|||+|+++++
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~ 756 (963)
T PLN02563 677 EYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPL 756 (963)
T ss_pred cCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCc
Confidence 39999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCC--CCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy5309 1082 VEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTG--SQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFE 1159 (1618)
Q Consensus 1082 ~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~--~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~ 1159 (1618)
.+|..|+.+.++...+.+.++.+++..+.......... ......|+|++++++.++++++++|++|+|++|++. +|+
T Consensus 757 ~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~-lme 835 (963)
T PLN02563 757 RDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISA-MME 835 (963)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHH
Confidence 99999998877665544444444444331111111111 112356899999999999999999999999999998 577
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1160 LQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1160 l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
+.+.++.+ . ....++++.+++||+|||||+|||||+.||.+ .|+|.+.||..+
T Consensus 836 f~n~l~~~-------~----~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~---------~sv~~~~WP~~d 888 (963)
T PLN02563 836 FTNAAYKW-------D----KVPREAIEPFVLLLSPYAPHLAEELWFRLGHS---------NSLAYEPWPEAN 888 (963)
T ss_pred HHHHHhCc-------h----HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC---------CeeeeCCCCCCC
Confidence 77654421 1 14578999999999999999999999999853 245677777644
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-94 Score=936.25 Aligned_cols=677 Identities=22% Similarity=0.348 Sum_probs=484.2
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
++-.+.++|++||++|+++++|++..+. .
T Consensus 3 ~~y~~~~iE~~w~~~W~~~~~f~~~~~~---------------------------------------------------~ 31 (805)
T PRK00390 3 ERYNPKEIEKKWQKYWEENKTFKTTEDS---------------------------------------------------S 31 (805)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccC---------------------------------------------------C
Confidence 4567899999999999999999875532 2
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+++.+||||||.|||||+++++++|+++||+||+|++|++++||||||+|||..|++ .|+.
T Consensus 32 ~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~-------~g~~--------- 95 (805)
T PRK00390 32 KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIK-------TGTH--------- 95 (805)
T ss_pred CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHH-------cCCC---------
Confidence 369999999999999999999999999999999999999999999999999999988764 1211
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
|.+|++++++.|+++|++||+++||++.
T Consensus 96 ----------------------------------------------------~~~~~~~~~~~~~~~~~~lGi~~Dw~~~ 123 (805)
T PRK00390 96 ----------------------------------------------------PAEWTYENIANMKKQLKSLGFSYDWSRE 123 (805)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence 3467788889999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCC-CCCCeeEE-----EEEEeeccCCc--
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGE-GVGPQEYT-----LIKMRLVKPYP-- 319 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~y~-----~~~~~~~~~~~-- 319 (1618)
|.|++ |.|.+.++|+|.+|+++|+||++.++|+|||.|+|+||++|++.+. ..+.+.+. .+.|++.+ |.
T Consensus 124 ~~T~~--~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~-~~~~ 200 (805)
T PRK00390 124 IATCD--PEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITD-YADE 200 (805)
T ss_pred eecCC--HHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecch-hHHH
Confidence 99999 8899999999999999999999999999999999999999998542 11211111 12222211 00
Q ss_pred ------------------------------cccccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEE
Q psy5309 320 ------------------------------AKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFL 369 (1618)
Q Consensus 320 ------------------------------~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~i 369 (1618)
..+ .+.+++.+|+|||||||||+||+||||||++.|+...+ .++. .
T Consensus 201 L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f-~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~-~~~~--~ 276 (805)
T PRK00390 201 LLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTF-KVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLA-EQNP--A 276 (805)
T ss_pred HHHHHHhhccCcHHHHHHHHhhccccceEEEEE-EccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhh-cchH--H
Confidence 000 01223468999999999999999999999998877632 1110 0
Q ss_pred EecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccc
Q psy5309 370 VAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALC 449 (1618)
Q Consensus 370 v~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~ 449 (1618)
++.+..+ .. .-.++ .+..++.+++|. + .|..+.++++
T Consensus 277 -~~~~~~~--------------------------------~~---~~~~~----~~~~~~~~~~g~-l--~g~~~~~P~~ 313 (805)
T PRK00390 277 -VAAFIEE--------------------------------CK---KKSDL----ERQTETKEKTGV-F--TGLYAIHPLT 313 (805)
T ss_pred -HHHHHHH--------------------------------Hh---hhcch----hhhhcccceeee-e--cCcEEECCCC
Confidence 0000000 00 00000 011122233332 2 3555554443
Q ss_pred cceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEee
Q psy5309 450 DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVA 529 (1618)
Q Consensus 450 ~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~ 529 (1618)
|..+| +++
T Consensus 314 ----------------------------------------------------~~~ip--------------------i~~ 321 (805)
T PRK00390 314 ----------------------------------------------------GEKIP--------------------VWI 321 (805)
T ss_pred ----------------------------------------------------CCeee--------------------EEE
Confidence 22356 444
Q ss_pred ccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhh
Q psy5309 530 HLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQW 609 (1618)
Q Consensus 530 ~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~ 609 (1618)
+ ++|+++.|||+| |+ +|+|+ +.||.++.+ |
T Consensus 322 ~--------------~~V~~~~GTG~V------~~--------~Pah~------------~~D~~~~~~----------~ 351 (805)
T PRK00390 322 A--------------DYVLMDYGTGAV------MA--------VPAHD------------QRDFEFAKK----------Y 351 (805)
T ss_pred e--------------ccccCCCCCCeE------EE--------cCCCC------------HHHHHHHHH----------c
Confidence 3 789999999999 99 99999 999987765 4
Q ss_pred HhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHH
Q psy5309 610 LIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDK 689 (1618)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~ 689 (1618)
|++ .+++|+.+|.+.
T Consensus 352 ------------------------------~L~---------------~~~~i~~~g~~~-------------------- 366 (805)
T PRK00390 352 ------------------------------GLP---------------IKPVIEPGDGDE-------------------- 366 (805)
T ss_pred ------------------------------CCC---------------ceeeeCCCCccc--------------------
Confidence 332 234444332110
Q ss_pred HHHHHHHHHhhcccceeee-ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCC
Q psy5309 690 LQEAKELVYLKGFYDGIML-VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSD 768 (1618)
Q Consensus 690 ~~~~~~~~~~~~~~~G~~~-~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r 768 (1618)
++.+.+|.+ +|+|+ .|.|+|+.+++||++|++.|++.|+..
T Consensus 367 --~~~~~~~~~---~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~--------------------------------- 408 (805)
T PRK00390 367 --DISEEAYTG---DGVLINSGELDGLDSEEAKEAIIAWLEEKGLGK--------------------------------- 408 (805)
T ss_pred --ccccccccC---CeEEEeccccCCCCHHHHHHHHHHHHHHcCCCC---------------------------------
Confidence 112233432 68876 589999999999999999999999420
Q ss_pred CchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeec
Q psy5309 769 SPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACS 848 (1618)
Q Consensus 769 ~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~IS 848 (1618)
+ + +.+ +++|||||
T Consensus 409 -~-----------------------~-----------------------------v~~--------------~l~DW~IS 421 (805)
T PRK00390 409 -R-----------------------K-----------------------------VNY--------------RLRDWGIS 421 (805)
T ss_pred -C-----------------------c-----------------------------eEE--------------ECCCcccc
Confidence 0 1 011 36899999
Q ss_pred ccCCCCcccCCCccccccccCCcceEeehhHHH-HHhhcCccCCCCC------ccCC------CCcCCCCCcceeEEecc
Q psy5309 849 RTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVA-HLLQGGTFRGENG------NALN------IKAEDLTPEVWDYVFFK 915 (1618)
Q Consensus 849 Rqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~-~~l~~~~~~g~~~------~~l~------~~~~~l~~~~~d~~f~~ 915 (1618)
|||+||+|||+ |+|++|+ .+.+....+. ++.......|... ..++ .......+|++|.||+|
T Consensus 422 RQR~WG~PIPi---~~~~~~g--~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdS 496 (805)
T PRK00390 422 RQRYWGEPIPI---IHCEDCG--IVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGS 496 (805)
T ss_pred ccccCCCceeE---EEECCCC--ceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCccccccccc
Confidence 99999999999 9998764 3333222211 1111001112110 0000 12345578999999999
Q ss_pred cCCCCCCCCCChh-hHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHH
Q psy5309 916 AAPFPPKCRVPKA-KLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLI 994 (1618)
Q Consensus 916 ~~~~~~~~~~~~~-~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i 994 (1618)
+-.+..+ ..+.. ...-.++.|++|||+|+|++|.||+++|+.|+||+|++|++ .|+
T Consensus 497 sw~~~~~-~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~------------~~~---------- 553 (805)
T PRK00390 497 SWYYLRY-TDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRD------------LGL---------- 553 (805)
T ss_pred ccHHHHh-cCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHH------------hhc----------
Confidence 5211101 01110 00002577899999999999999999999999999988841 111
Q ss_pred hhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEe
Q psy5309 995 QNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLC 1074 (1618)
Q Consensus 995 ~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~ 1074 (1618)
..++.| ++++++|||+ |||||+||+|+|.+++++||||++|||
T Consensus 554 -----------------------------~~~~~P---fk~v~~~G~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~ 596 (805)
T PRK00390 554 -----------------------------VSSDEP---FKKLLTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLF 596 (805)
T ss_pred -----------------------------ccCCcc---hhhheecCcE-----EeCCCCCCCCCHHHHHHHcChHHHHHH
Confidence 002223 6999999999 999999999999999999999999999
Q ss_pred ecccCcccccccccHHHHHH---HHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHH
Q psy5309 1075 LADSGDSVEDANFVESMADA---GILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKE 1151 (1618)
Q Consensus 1075 l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~ 1151 (1618)
+++++++++|++|+++.++. .+++++|++++...... .. .......|+|++++++.++++++++|++|+|+.
T Consensus 597 l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~---~~--~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ 671 (805)
T PRK00390 597 EMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAG---AL--DVAALSEDKELRRKLHKTIKKVTEDIERLRFNT 671 (805)
T ss_pred HHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhccc---cc--CcccChhhHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99988999999999987654 46778887777332221 11 112346899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1152 ALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1152 al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
|++. ++.+.+.++.|.. ...+.++.++++.+++||+||+||+|||+|+.||.+ . ++|.+.||..
T Consensus 672 ai~~-l~~f~n~lsk~~~------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~-~--------sv~~~~wP~~ 735 (805)
T PRK00390 672 AIAA-LMELVNALYKAED------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE-G--------SIANAPWPTA 735 (805)
T ss_pred HHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-C--------eeEecCCCCC
Confidence 9998 6788887777752 345678899999999999999999999999999753 2 4556677653
|
|
| >KOG0435|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-73 Score=667.19 Aligned_cols=679 Identities=20% Similarity=0.262 Sum_probs=446.1
Q ss_pred cchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCC
Q psy5309 7 FKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSP 86 (1618)
Q Consensus 7 ~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1618)
.|......||+.|++.|.+...|.++.++ +
T Consensus 27 ~~~~~~~~iEk~W~~~~~~~~~~~~~~d~--------------------------------------------------s 56 (876)
T KOG0435|consen 27 KKEIAIAMIEKHWKQYLKDGFPFSKDSDK--------------------------------------------------S 56 (876)
T ss_pred chhhhHHHHHHHHHHHHhcCCcccccccc--------------------------------------------------C
Confidence 45555567999999999998888664333 2
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
++| +|+..+|||+|.|||||.|.+|+.|++|||+||+||+|+.|+|||..|+|.|.+|.. .|+.
T Consensus 57 k~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAie-------rgv~-------- 120 (876)
T KOG0435|consen 57 KKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIE-------RGVH-------- 120 (876)
T ss_pred CCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHh-------cCCC--------
Confidence 344 556666778888999999999999999999999999999999999999999988752 2322
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccC
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRR 246 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~ 246 (1618)
|..|....++.+++||+++|+++||++
T Consensus 121 -----------------------------------------------------P~sWT~~NI~~Mk~Ql~~lg~~FDWdr 147 (876)
T KOG0435|consen 121 -----------------------------------------------------PASWTINNIAKMKQQLKSLGISFDWDR 147 (876)
T ss_pred -----------------------------------------------------chhhhHHHHHHHHHHHHHcCccccccc
Confidence 457777788899999999999999999
Q ss_pred ceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccC-------CCCCCeeEEEEEEeecc---
Q psy5309 247 TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASG-------EGVGPQEYTLIKMRLVK--- 316 (1618)
Q Consensus 247 ~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~-------~~~~~~~y~~~~~~~~~--- 316 (1618)
+..|++ |+|.++.||+|.+|+++||.|+.+.+|||||.++|+||+.+|... ..+......++.++...
T Consensus 148 EiSTC~--PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk 225 (876)
T KOG0435|consen 148 EISTCE--PDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAK 225 (876)
T ss_pred ccccCC--cchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHH
Confidence 999999 889999999999999999999999999999999999999999432 11111111222222110
Q ss_pred ---------------------------CCccccccCCC--CCcEEEEeecCccccccCceEEeCCCCCceeecccCCccE
Q psy5309 317 ---------------------------PYPAKLCCLDS--KPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPV 367 (1618)
Q Consensus 317 ---------------------------~~~~~~~~~~~--~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~ 367 (1618)
+++..+..+++ .++.|.|+|||||||+|...+++.|++.-+..+. .
T Consensus 226 ~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~----~- 300 (876)
T KOG0435|consen 226 RLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS----S- 300 (876)
T ss_pred HHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhc----h-
Confidence 11111111122 2478999999999999999999988874333210 0
Q ss_pred EEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEec
Q psy5309 368 FLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVA 447 (1618)
Q Consensus 368 ~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~ 447 (1618)
+.+.++ ...|.+++|. .+-...
T Consensus 301 --lkefl~-----------------------------------------------------~~~l~~Kg~~-lp~~A~-- 322 (876)
T KOG0435|consen 301 --LKEFLS-----------------------------------------------------KSDLPQKGVQ-LPCQAK-- 322 (876)
T ss_pred --HHHhhh-----------------------------------------------------hhhccccCcc-cceeec--
Confidence 000000 0112222222 000011
Q ss_pred cccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEE
Q psy5309 448 LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYT 527 (1618)
Q Consensus 448 l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~ 527 (1618)
+.+. |..|| +
T Consensus 323 -------------------------------------Np~t-------------g~~iP--------------------v 332 (876)
T KOG0435|consen 323 -------------------------------------NPVT-------------GRAIP--------------------V 332 (876)
T ss_pred -------------------------------------cCCC-------------Cceee--------------------E
Confidence 1111 56678 2
Q ss_pred eeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchh
Q psy5309 528 VAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDE 607 (1618)
Q Consensus 528 ~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~ 607 (1618)
+.. +.|....|||.+ |. +|+|+ .|+|+.| .+
T Consensus 333 ~~a--------------~~v~~~~gt~a~------m~--------~P~hd----~rD~ela--------~~--------- 363 (876)
T KOG0435|consen 333 VVA--------------DYVLDPYGTGAV------MG--------APGHD----QRDKELA--------QK--------- 363 (876)
T ss_pred EEe--------------chhccCCCccee------ee--------ccCcc----cchhHHH--------hc---------
Confidence 211 345567899998 87 99999 4555544 11
Q ss_pred hhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccH
Q psy5309 608 QWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDK 687 (1618)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~ 687 (1618)
- |+.- +.+|.+ ...+
T Consensus 364 -~------------------------------~~~~---------------~~~~~~-----------------~f~~-- 378 (876)
T KOG0435|consen 364 -I------------------------------GIKW---------------IICIEV-----------------IFTN-- 378 (876)
T ss_pred -c------------------------------ccee---------------EEEEee-----------------eecc--
Confidence 1 2211 011110 0001
Q ss_pred HHHHHHHHHHHhhcccceeee-ecccCC-cchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEee
Q psy5309 688 DKLQEAKELVYLKGFYDGIML-VGEFKG-KKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSV 765 (1618)
Q Consensus 688 ~~~~~~~~~~~~~~~~~G~~~-~~~~~G-~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v 765 (1618)
.|+.+ -+.++| +..++|+.+|++.+.+.|+-
T Consensus 379 ----------------~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g------------------------------- 411 (876)
T KOG0435|consen 379 ----------------FGKKNEQKAFTNLDIRQNAALKLFQFAERKGVG------------------------------- 411 (876)
T ss_pred ----------------hhhhhccccccchhHHHHHHHHHHHHHHhcCCC-------------------------------
Confidence 12222 244577 56677899999999888730
Q ss_pred eCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCce
Q psy5309 766 PSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEY 845 (1618)
Q Consensus 766 ~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW 845 (1618)
| +.. + ..++||
T Consensus 412 ----~------------------~~v---------------s--------------------------------~kLkDW 422 (876)
T KOG0435|consen 412 ----G------------------YVV---------------S--------------------------------YKLKDW 422 (876)
T ss_pred ----c------------------cee---------------c--------------------------------chhhhh
Confidence 0 111 1 147899
Q ss_pred eecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcC-ccCC-----------------CCCcc---CCCCcCCC
Q psy5309 846 ACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGG-TFRG-----------------ENGNA---LNIKAEDL 904 (1618)
Q Consensus 846 ~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~-~~~g-----------------~~~~~---l~~~~~~l 904 (1618)
.||||||||||||+ .+|+.|+ .+-|--.-+-..+.+- ++.+ +++++ -.-+.+++
T Consensus 423 LiSRQRyWGTPIPi---vhc~~cG--~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTF 497 (876)
T KOG0435|consen 423 LISRQRYWGTPIPI---VHCDDCG--AVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTF 497 (876)
T ss_pred hhhhhhccCCCcce---EEcCCCC--cccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchh
Confidence 99999999999999 9999875 2222211111111100 0111 11111 11345678
Q ss_pred CCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCc
Q psy5309 905 TPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGH 984 (1618)
Q Consensus 905 ~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~ 984 (1618)
+++.|+|.+|-++.+++ .+++ ++..++|+|+|+|++|++|+..|+.|+||+++.|- +.|.
T Consensus 498 vDSsWYYlRylDpkN~e-~~~d-------~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~------------di~~ 557 (876)
T KOG0435|consen 498 VDSSWYYLRYLDPKNPE-EPFD-------KAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLK------------DIGV 557 (876)
T ss_pred hccceeeEeecCCCCcc-cccc-------hhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHh------------hcCC
Confidence 89999999999988873 3333 23457999999999999999999999999999983 4444
Q ss_pred cchhh-hHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCC----cCcEEE-E-cccee-eCCccceeccCcc
Q psy5309 985 LLLNS-AKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEM----WPRGIR-A-NGHLL-LNSAKMSKSEGNF 1056 (1618)
Q Consensus 985 ~~~~e-~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~----~pk~v~-~-hG~vl-~~G~KMSKS~GNv 1056 (1618)
+...| +.++| .+||+.+.++..+-+..|.+..... -+..++ . .+-+. +--+|||||++|+
T Consensus 558 ~~t~EPF~~Li------------~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NG 625 (876)
T KOG0435|consen 558 VSTAEPFTKLI------------TQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNG 625 (876)
T ss_pred CcCCCcHHHHH------------hhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCC
Confidence 44556 56665 2334444444333333333211000 011111 1 11111 3358999999999
Q ss_pred cChHHHHhhcCccceEEeecccCcccccccccHHHH---HHHHhhHHHHHHHHHHHHHhcccCCCC----CCCCcchHHH
Q psy5309 1057 LTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA---DAGILRLYTFIEWVKEILATQSTLRTG----SQDSFNDKVF 1129 (1618)
Q Consensus 1057 V~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~---~~~~~kl~N~~~~l~~~l~~~~~~~~~----~~~~~~D~~~ 1129 (1618)
|+|.+++++||+|++|++++.++|+.++++|++..+ ...+.++|++...+.+.- +.+..... ......++.+
T Consensus 626 VdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar-~~g~~~d~~~~td~~dae~~kl 704 (876)
T KOG0435|consen 626 VDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQAR-DDGKAKDLKKLTDGFDAETRKL 704 (876)
T ss_pred CCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHH-hcCCcccccccccccchhHHHH
Confidence 999999999999999999999999999999997654 344556666555444432 11111111 1123345689
Q ss_pred HHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHh
Q psy5309 1130 LSEMNLKIKETEDHYT-KMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL 1208 (1618)
Q Consensus 1130 l~~l~~~i~~v~~~~e-~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~L 1208 (1618)
.+..+.++++|+++|+ .+.++.|++. +|.+.+.+..-.... ..+......+|..+++||+|++||+|+|+|..|
T Consensus 705 ~~~~n~fi~~vt~~~e~~~slNtaIS~-~m~ltN~l~~a~k~~----~~h~~~~~~al~~lv~mlaP~aPh~asE~Ws~l 779 (876)
T KOG0435|consen 705 KETYNFFIKQVTEHYEVLFSLNTAISD-MMGLTNALKKALKIV----LVHSPEFERALEALVIMLAPFAPHVASELWSAL 779 (876)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhh----hhcChHHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 9999999999999997 6679999998 788888665433221 122234566889999999999999999999999
Q ss_pred CCCc
Q psy5309 1209 GKDL 1212 (1618)
Q Consensus 1209 gkd~ 1212 (1618)
+.+.
T Consensus 780 ~~~~ 783 (876)
T KOG0435|consen 780 ANDL 783 (876)
T ss_pred hccc
Confidence 9553
|
|
| >KOG0437|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=647.76 Aligned_cols=728 Identities=40% Similarity=0.662 Sum_probs=518.4
Q ss_pred hHHHHHHHHH--HhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHH-hhhhccccccCCCCC
Q psy5309 12 LQKIEKEVQE--EWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKI-YEETVGDAVRSSPDD 88 (1618)
Q Consensus 12 ~~~~E~~~~~--~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 88 (1618)
-.++.++|+. -.+-+---|... . ++|||+|+|||||||++|+||.|+.+++|... |++. +
T Consensus 18 Ek~~q~~W~~e~~fevda~~el~~--~-----~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL----------~ 80 (1080)
T KOG0437|consen 18 EKKYQKKWDTEKVFEVDAPNELQK--S-----KPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERL----------Q 80 (1080)
T ss_pred HHHHHHhhhhhhheeccCchhccc--c-----cCceeEeccccccCceeeccceeehhhhHHHHHHHHh----------c
Confidence 3456777776 333222222322 2 58999999999999999999999999999987 8874 5
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+..|++|+.+ |-...--.+-+|=+.|=..+-|+.-.++.- ..+.++.+. + -+.+....
T Consensus 81 Gk~vLfPfgF-----HCTGMPI~A~AdKLkrEie~fG~ppdf~~e----------~eeEv~eev-----~--~~~~~~~~ 138 (1080)
T KOG0437|consen 81 GKNVLFPFGF-----HCTGMPIKASADKLKREIELFGCPPDFPEE----------EEEEVEEEV-----K--TEDAIEDV 138 (1080)
T ss_pred CceEEeeccc-----ccCCCccHHhHHHHHHHHHHhCCCCCCchh----------hhhhhhhcc-----c--cccccccc
Confidence 5679998866 555555678899999999999988766432 111111110 0 00000000
Q ss_pred CCCCCCCCch-h---ccccc-------CcchHHHHHhhhhHHHH--------HHHHhcCCCHHHHHHHhh--hhhHHhhc
Q psy5309 169 QTDKDDDDPV-I---KDKSK-------GKKSKAVAKAGSAKYQW--------QIMQSLGLEDDEIRKFAD--ASHWLDHF 227 (1618)
Q Consensus 169 ~~~~~~~~~~-~---~~~~~-------g~~~~~~ak~~~~~~~~--------~~~~~~g~~~~e~~~f~~--~~~~~~~~ 227 (1618)
...-++.+. . ..+|+ |....+|.++...+++- ..++++|...||+|.|++ ..++++.|
T Consensus 139 -k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsF 217 (1080)
T KOG0437|consen 139 -KFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSF 217 (1080)
T ss_pred -ccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHH
Confidence 000001111 1 11222 77777888888777633 447899999999999996 68999999
Q ss_pred hhHHHHHHHHcC-CcccccC-ceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEE----------ecCCCCcccch-
Q psy5309 228 PPLAVQDLRSIG-IHVDWRR-TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVF----------SPRDNQPCMDH- 294 (1618)
Q Consensus 228 ~~~~~~~l~~lG-i~~Dw~~-~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w----------~p~~~t~lsd~- 294 (1618)
+.||++.|+.+| +.++-+. -|+..|.+|..+- =+..| +|..|+-| -|.--+.+.+.
T Consensus 218 VRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDH--------DR~sG---EgV~PqeytliKle~le~~p~~l~~~~~~~ 286 (1080)
T KOG0437|consen 218 VRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDH--------DRASG---EGVGPQEYTLIKLEVLEPFPKALSSLKDLR 286 (1080)
T ss_pred HHHHHHHHHhcCCcccCcceeeecCCCCCccccc--------ccccC---CCCCcceEEEEEEEecccchhhccccccce
Confidence 999999999999 6666433 3566677765541 12223 22222221 12211222221
Q ss_pred ----------hhccCCC---CCCee-EEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCC-Cceee
Q psy5309 295 ----------DRASGEG---VGPQE-YTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDM-AYIAL 359 (1618)
Q Consensus 295 ----------Ev~~~~~---~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~ 359 (1618)
|.-+|.- ++|.. |-.+.. ..+..+-|+|-|.-...+-++..-++-- .++.-
T Consensus 287 v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~--------------~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~ 352 (1080)
T KOG0437|consen 287 VYLVAATLRPETMYGQTNCYVGPDIKYGGFEA--------------CNETEVFIATERAARNMSYQKLTKERGVVSCLVT 352 (1080)
T ss_pred eeeeehhcCCccccCccceEEcCCccEEeEEe--------------cCCceEEEeehHHHhhcchhhccccCCcccceee
Confidence 1111110 11111 111100 1123566666665444443333222221 11110
Q ss_pred c------------cc-CCccEEEEe-cccccCccCCCeeEEecCCCCeeEEEcC-----C-------------CcEEEe-
Q psy5309 360 S------------CL-DSKPVFLVA-ATLRPETMYGQTNAWVRPDMAYIAFTTA-----T-------------GEVFVC- 406 (1618)
Q Consensus 360 ~------------~~-~~~~~~iv~-~~~~~~t~~Gt~~v~v~P~~~y~~~~~~-----~-------------~~~~i~- 406 (1618)
. |+ .-+.++++. .|+... -|||+|--.|+....||... + ..+.|+
T Consensus 353 i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~--KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~ 430 (1080)
T KOG0437|consen 353 ITGYDLIGAPLSAPLSVYERVYALPMLTILAT--KGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIR 430 (1080)
T ss_pred ecchhhcCCcccCcchhhheeeeccceeeecc--CCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceee
Confidence 0 11 112233322 233333 79999888887544443221 0 011111
Q ss_pred -------------cc------cc------cc--------------ccccCCCchhhhHHHHhhhhcc------------C
Q psy5309 407 -------------TE------RS------AR--------------NMAYQGFTEVEGKINVLLRLTG------------Q 435 (1618)
Q Consensus 407 -------------~~------~~------~~--------------~~~~~g~~~~~a~~~ii~~l~~------------~ 435 (1618)
.+ +. +. -.+|.|-.+++++..|-.+|.. +
T Consensus 431 ~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkq 510 (1080)
T KOG0437|consen 431 IPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQ 510 (1080)
T ss_pred ccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchh
Confidence 11 00 00 0367777777776666666643 3
Q ss_pred cceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhc
Q psy5309 436 VCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIES 515 (1618)
Q Consensus 436 ~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~ 515 (1618)
.++|||++|++.|+|||||+|++..||+.+.+++++++.+.++.++.|...++||+.|.|||..+.||+||||++|+|||
T Consensus 511 VmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvES 590 (1080)
T KOG0437|consen 511 VMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVES 590 (1080)
T ss_pred hhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceec
Q psy5309 516 LSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRC 595 (1618)
Q Consensus 516 ~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~ 595 (1618)
|||||||||+|+++|+|.+ ++-|...++..+.+++.|.+||||||++. +.++++.+|.+.|++||+||+||||.|+|+
T Consensus 591 LSDSTIYmAyYTvaHll~~-d~~g~~~~plgi~~~QMtdeVwdYvF~~~-~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrv 668 (1080)
T KOG0437|consen 591 LSDSTIYMAYYTVAHLLHR-DLYGKVEGPLGIKPDQMTDEVWDYVFLNE-PYPKNTAIPEEALSNLRREFEYFYPIDLRV 668 (1080)
T ss_pred cchhHHHHHHHHHHHHHHH-hhccCCcccCCCChhhcCHHHHHHhhccC-CCCcCCCccHHHHHHHHHhhhcccceeeee
Confidence 9999999999999999987 88888888999999999999999999987 667788899999999999999999999999
Q ss_pred cccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHH
Q psy5309 596 SGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTV 675 (1618)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~ 675 (1618)
+|+ .+ |
T Consensus 669 sGK-----------------------------------------DL--------------------i------------- 674 (1080)
T KOG0437|consen 669 SGK-----------------------------------------DL--------------------I------------- 674 (1080)
T ss_pred ccc-----------------------------------------cc--------------------c-------------
Confidence 987 10 0
Q ss_pred HHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccc
Q psy5309 676 YEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIRE 755 (1618)
Q Consensus 676 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 755 (1618)
.+.+ .
T Consensus 675 ------------------------------------------------------~NHL-----------t---------- 679 (1080)
T KOG0437|consen 675 ------------------------------------------------------PNHL-----------T---------- 679 (1080)
T ss_pred ------------------------------------------------------ccce-----------e----------
Confidence 0000 0
Q ss_pred cCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHH
Q psy5309 756 DKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNF 835 (1618)
Q Consensus 756 ~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~ 835 (1618)
.||..
T Consensus 680 ------------------------------------------------fflyn--------------------------- 684 (1080)
T KOG0437|consen 680 ------------------------------------------------FFLYN--------------------------- 684 (1080)
T ss_pred ------------------------------------------------Eeeee---------------------------
Confidence 01100
Q ss_pred HHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecc
Q psy5309 836 GASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFK 915 (1618)
Q Consensus 836 ~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~ 915 (1618)
|.
T Consensus 685 ----------------------------------------------Hv-------------------------------- 686 (1080)
T KOG0437|consen 685 ----------------------------------------------HV-------------------------------- 686 (1080)
T ss_pred ----------------------------------------------hh--------------------------------
Confidence 00
Q ss_pred cCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHh
Q psy5309 916 AAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQ 995 (1618)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~ 995 (1618)
. -||.+ -|
T Consensus 687 -A----------------------l~~~k----------------------~W--------------------------- 694 (1080)
T KOG0437|consen 687 -A----------------------LFPEK----------------------KW--------------------------- 694 (1080)
T ss_pred -h----------------------hcccc----------------------cC---------------------------
Confidence 0 00100 15
Q ss_pred hhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEee
Q psy5309 996 NHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1075 (1618)
Q Consensus 996 ~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l 1075 (1618)
|+.|.+|||++++++|||||.||+.+.++.+++||||+.|+.|
T Consensus 695 -------------------------------------PkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlal 737 (1080)
T KOG0437|consen 695 -------------------------------------PKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLAL 737 (1080)
T ss_pred -------------------------------------ccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeee
Confidence 5788899999999999999999999999999999999999999
Q ss_pred cccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy5309 1076 ADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT 1155 (1618)
Q Consensus 1076 ~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~ 1155 (1618)
+.+|+..+|.||.+..++.++.+|.+...++.+++.....+..++...+.|+.|.+.+|.+++...++|+...|+.|++.
T Consensus 738 AdaGD~veDANF~ea~AnAaILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~ 817 (1080)
T KOG0437|consen 738 ADAGDGVEDANFVEANANAAILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKY 817 (1080)
T ss_pred ecccCCcccchhHHhcccHHHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 99999999999999999999999999999999998765555556556689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhh
Q psy5309 1156 GFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFI 1221 (1618)
Q Consensus 1156 ~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~ 1221 (1618)
.++++..+.+.|.+.+. ...+..++...+++.+.||+||+||+||.||+.++++..++|.+|..
T Consensus 818 Gfyd~qaArD~Yrel~g--~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~v~~~wP~ 881 (1080)
T KOG0437|consen 818 GFYDLQAARDMYRELCG--EGMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKNFSVNVGWPF 881 (1080)
T ss_pred hhHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCCceeecCCCC
Confidence 99999999999999876 56888999999999999999999999999999999988777665543
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-70 Score=724.44 Aligned_cols=727 Identities=38% Similarity=0.605 Sum_probs=483.5
Q ss_pred hHHHHHHHHH--HhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHH-hhhhccccccCCCCC
Q psy5309 12 LQKIEKEVQE--EWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKI-YEETVGDAVRSSPDD 88 (1618)
Q Consensus 12 ~~~~E~~~~~--~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 88 (1618)
-.++.++|.+ .++...- ...... ++|||+|+||||+||++|+||.+|++..+.-. |+ +++
T Consensus 19 E~k~q~~W~~~~~fe~~~~-~~~~~~------~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Ryk----------rm~ 81 (1084)
T PLN02959 19 EVAVQKWWEEEKVFEAEAG-DEPPKP------GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYH----------RLR 81 (1084)
T ss_pred HHHHHHHHHhcCCcccCcc-cccCCC------CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHH----------HcC
Confidence 3567777854 2333221 122222 47999999999999999999999995555433 44 489
Q ss_pred CeEEeCCCCC-CCCcchhhhhchhhhhHHHHHHHHHcCCcccccc---cccC-----------CChhhHHHHHHHHH---
Q psy5309 89 KFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF---GFHC-----------TGMPIKACADKLKR--- 150 (1618)
Q Consensus 89 ~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~---G~d~-----------~G~pIe~~a~k~~~--- 150 (1618)
+|.|++||.+ .||.+-.+-| |=+.|=...-|..-.|+- +-+. ..++.+....+-.+
T Consensus 82 G~~vlfp~G~d~tGlPIe~~a------ek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~ 155 (1084)
T PLN02959 82 GANVLLPFAFHCTGMPIKASA------DKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVA 155 (1084)
T ss_pred CCccCCCCCcCCCCccHHHHH------HHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 9999999998 6776643332 212111112232111110 0000 00111111111000
Q ss_pred ----------HHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhh
Q psy5309 151 ----------EMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADA 220 (1618)
Q Consensus 151 ----------~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~ 220 (1618)
.+...|++ ++....+.+| ...++++... +.+.|+++|.+.||.|.|.+.
T Consensus 156 k~~~~~~~~~~~~~~~~~----~~~i~~f~dp----------------~~~~~yF~~~-~~~~~k~lG~~iDW~r~f~T~ 214 (1084)
T PLN02959 156 KSGTQKYQWEIMRSFGLP----DSEIAKFQDP----------------YHWLSYFPPL-AKEDLKAFGLGCDWRRSFITT 214 (1084)
T ss_pred HhCCchHHHHHHhhcCCc----hhhhhhccCH----------------HHHHHhccHH-HHHHHHHhCceEeCCCCcCCC
Confidence 01122332 2222222211 1122222222 356789999999999999986
Q ss_pred h--hHHhhchhHHHHHHHHcCCccc--ccCceeecCCChhhhHHHHH-------H-----H-------HHHHhcCccccC
Q psy5309 221 S--HWLDHFPPLAVQDLRSIGIHVD--WRRTFITTDSNPFFDSFVRW-------Q-----F-------MRLRDRHKIKYG 277 (1618)
Q Consensus 221 ~--~~~~~~~~~~~~~l~~lGi~~D--w~~~~~T~d~~p~y~~~v~~-------~-----f-------~~L~~kG~iy~g 277 (1618)
. +.++.|+.+|+..|.+.|..+- .-..|++.+.+|.-+.-+.. . | ..+. .+--.+
T Consensus 215 d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~--~~~~~~ 292 (1084)
T PLN02959 215 DVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLK--ALEGKK 292 (1084)
T ss_pred CCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhh--hcCCCC
Confidence 6 8999999999999999997655 22335666555544421110 0 0 0000 000011
Q ss_pred ceeEEEecCCCCcccchhhccCCCCCCe-eEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCCCc
Q psy5309 278 KRYTVFSPRDNQPCMDHDRASGEGVGPQ-EYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAY 356 (1618)
Q Consensus 278 ~~~v~w~p~~~t~lsd~Ev~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y 356 (1618)
...+.|..+-.|..++-=+- +.|. .|..++.. .+..++++.-.-+.|. .+.....+ ..|
T Consensus 293 ~~l~~aTtrPeTl~g~ta~~----VnP~~~Y~~~~~~--------------~~e~~i~s~~~~~~~~-~q~~~~~~-~~~ 352 (1084)
T PLN02959 293 VFLAAATLRPETMYGQTNCW----VLPDGKYGAYEIN--------------DTEVFILTARAALNLA-YQNFSKVP-GKP 352 (1084)
T ss_pred eEEEEEeCccchhhhheeEE----ECCCCeEEEEEec--------------CCeEEEEehhhhhhhH-HhhhcccC-CCc
Confidence 23556777766666553222 2222 34444321 0122222222222110 00000000 011
Q ss_pred e--------------eecccCCcc-EEEEe-cccccCccCCCeeEEecCCCCeeEEEcC------------CC-------
Q psy5309 357 I--------------ALSCLDSKP-VFLVA-ATLRPETMYGQTNAWVRPDMAYIAFTTA------------TG------- 401 (1618)
Q Consensus 357 ~--------------~~~~~~~~~-~~iv~-~~~~~~t~~Gt~~v~v~P~~~y~~~~~~------------~~------- 401 (1618)
. ..+|+.+.+ ++++. .+++++ +|||+|++.|+|+..||... .|
T Consensus 353 ~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~--~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~ 430 (1084)
T PLN02959 353 TCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTD--KGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVL 430 (1084)
T ss_pred EEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCC--CCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCccccc
Confidence 1 123555555 65554 457776 99999999999977666541 01
Q ss_pred ---cEEEecccc-----------------------------------cc-----ccccCCCchhhhHHHHhhhhccCc--
Q psy5309 402 ---EVFVCTERS-----------------------------------AR-----NMAYQGFTEVEGKINVLLRLTGQV-- 436 (1618)
Q Consensus 402 ---~~~i~~~~~-----------------------------------~~-----~~~~~g~~~~~a~~~ii~~l~~~~-- 436 (1618)
.+.+++.++ .. ...|+|+.+++|+..|++.|+..+
T Consensus 431 ~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l 510 (1084)
T PLN02959 431 PFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQA 510 (1084)
T ss_pred ccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCc
Confidence 012212111 00 246899999999999999997654
Q ss_pred ----------ceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCC
Q psy5309 437 ----------CIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLP 506 (1618)
Q Consensus 437 ----------l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP 506 (1618)
|+|||++|++.+++||||+|++..||..+.+++++++++|+.+++.|.+|++|++|||||||||||||||
T Consensus 511 ~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP 590 (1084)
T PLN02959 511 ILYSEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP 590 (1084)
T ss_pred eeeeEcCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhc
Q psy5309 507 WDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQ 586 (1618)
Q Consensus 507 ~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~ 586 (1618)
|++.|+|+|+||+|+|||+|+++++++++...|... ..+++++.+..||||+|... ..|..+|+|.+.|++||+||+
T Consensus 591 Wd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~--~~i~~~~~~~dV~D~wF~Sg-~~p~~t~~p~~~l~~~r~ef~ 667 (1084)
T PLN02959 591 WDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDK--SSIKPEQMTDEVWDFVFCGG-PLPKSSDIPAELLEKMKQEFE 667 (1084)
T ss_pred cccceeeccCCCCceeechhhHHHHHhhhhccCCcc--ccCChhhcCccceeEeecCC-CcccccCCCHHHHhhhhHHHH
Confidence 999999999999999999999998877543333322 24778888999999998864 556667899999999999999
Q ss_pred cccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCC
Q psy5309 587 YWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPE 666 (1618)
Q Consensus 587 ~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 666 (1618)
||||.|++++|. +.++
T Consensus 668 ~~yP~Dl~~sG~-------------Dii~--------------------------------------------------- 683 (1084)
T PLN02959 668 YWYPFDLRVSGK-------------DLIQ--------------------------------------------------- 683 (1084)
T ss_pred hhCCCeEEEecc-------------cHHH---------------------------------------------------
Confidence 999999998876 0000
Q ss_pred CCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceee
Q psy5309 667 YGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIY 746 (1618)
Q Consensus 667 ~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~ 746 (1618)
T Consensus 684 -------------------------------------------------------------------------------- 683 (1084)
T PLN02959 684 -------------------------------------------------------------------------------- 683 (1084)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccc
Q psy5309 747 TLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNT 826 (1618)
Q Consensus 747 ~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~ 826 (1618)
-||..+
T Consensus 684 --------------------------------------------------------~wl~~~------------------ 689 (1084)
T PLN02959 684 --------------------------------------------------------NHLTFA------------------ 689 (1084)
T ss_pred --------------------------------------------------------HHHHHH------------------
Confidence 011000
Q ss_pred cChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCCCC
Q psy5309 827 YHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTP 906 (1618)
Q Consensus 827 ~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~ 906 (1618)
+ ..|..-
T Consensus 690 ----------------------------------------------l------~~~~al--------------------- 696 (1084)
T PLN02959 690 ----------------------------------------------I------YNHTAI--------------------- 696 (1084)
T ss_pred ----------------------------------------------H------HHHHHh---------------------
Confidence 0 000000
Q ss_pred cceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccc
Q psy5309 907 EVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL 986 (1618)
Q Consensus 907 ~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~ 986 (1618)
.|. .-|
T Consensus 697 -----------------------------------------~~~---------------~P~------------------ 702 (1084)
T PLN02959 697 -----------------------------------------WAE---------------EHW------------------ 702 (1084)
T ss_pred -----------------------------------------cCC---------------CCC------------------
Confidence 000 003
Q ss_pred hhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhc
Q psy5309 987 LNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKF 1066 (1618)
Q Consensus 987 ~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~y 1066 (1618)
|+.+++||||+.+|+|||||+||+|+|.++|++|
T Consensus 703 ----------------------------------------------p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~ky 736 (1084)
T PLN02959 703 ----------------------------------------------PRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEF 736 (1084)
T ss_pred ----------------------------------------------CceEEEccEEecCCcCccccCCCcCCHHHHHHHh
Confidence 4789999999999999999999999999999999
Q ss_pred CccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q psy5309 1067 SADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTK 1146 (1618)
Q Consensus 1067 GaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~ 1146 (1618)
|||++|||++++++..+|.+|+++.++.++.++.|+++++.+++...............|+|++++++.++++++++|++
T Consensus 737 GADalRl~la~~~~~~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~e~ 816 (1084)
T PLN02959 737 SADATRFALADAGDGVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNYEA 816 (1084)
T ss_pred CchHHHHHHhhcCCccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999889999999999998888899999888877665421122122234678999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHh-CCCccccccchhhhhhh
Q psy5309 1147 MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL-GKDLIQNHLTFFIYIHT 1225 (1618)
Q Consensus 1147 ~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~L-gkd~~svh~~~f~s~~~ 1225 (1618)
|+|++|++..++++....++|...+.. ....+.++..+++.+++||+|||||+|||||+.| |++ . |+|.
T Consensus 817 y~f~~A~~~~~Yel~~~k~~yr~~~~~-~~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~-~--------sI~~ 886 (1084)
T PLN02959 817 MMFREALKSGFYDLQAARDEYRLSCGS-GGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKE-G--------FAVT 886 (1084)
T ss_pred ccHHHHHHHHHHHHHHhHHHHhhcccc-chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCC-C--------eEEe
Confidence 999999998666677777777654321 2245778999999999999999999999999998 543 2 4566
Q ss_pred cccCC
Q psy5309 1226 AIWGD 1230 (1618)
Q Consensus 1226 ~~~p~ 1230 (1618)
+.||.
T Consensus 887 ~~wP~ 891 (1084)
T PLN02959 887 AGWPV 891 (1084)
T ss_pred cCCCC
Confidence 67764
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=696.86 Aligned_cols=667 Identities=30% Similarity=0.515 Sum_probs=463.5
Q ss_pred ceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHHHH
Q psy5309 45 FFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRFNR 122 (1618)
Q Consensus 45 ~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~~r 122 (1618)
||+|.|+||+||.+||||.+++ ++.|+.+| +++++|.|++||.+ .+|.++.+-|-.....| .
T Consensus 27 f~i~~ppPy~nG~lH~GH~~~~----------~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~------~ 90 (938)
T TIGR00395 27 FFLTMAYPYLNGVMHAGHCRTF----------TIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRD------E 90 (938)
T ss_pred eEEecCCCCCCCCcccchhhhh----------hHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhh------h
Confidence 8999999999999999999999 44444444 35889999999999 99999877443322111 1
Q ss_pred HcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHH
Q psy5309 123 LKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQ 202 (1618)
Q Consensus 123 m~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~ 202 (1618)
..|.. +-+-+|++-+...+. . +....+.+.... +.+
T Consensus 91 ~~~~~-----~~~~~~i~~~~i~~~--------~------------------------------~~~~~~~~~~~~-~~~ 126 (938)
T TIGR00395 91 LTIKN-----YTEVHAIPREELLKF--------T------------------------------DPEYIVEYFSRE-AES 126 (938)
T ss_pred hcccc-----chhhccCCHHHHHhh--------c------------------------------CHHHHHHHHHHH-HHH
Confidence 11100 001223333221110 0 012233333333 246
Q ss_pred HHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc--ccCceeecCCChhhhHHHHHHHHHHHhcC-----ccc
Q psy5309 203 IMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD--WRRTFITTDSNPFFDSFVRWQFMRLRDRH-----KIK 275 (1618)
Q Consensus 203 ~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D--w~~~~~T~d~~p~y~~~v~~~f~~L~~kG-----~iy 275 (1618)
.|+++|.+.||.|+|.+..+.+.+++.+++..|.+.|+.+- --..|++.+.+|.-+.-+ ....+ +++
T Consensus 127 ~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~------~~~e~~~~~~~~~ 200 (938)
T TIGR00395 127 ACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDL------LSGEGVTIVEYIL 200 (938)
T ss_pred HHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCCchhHh------ccCCccccceEEE
Confidence 78899999999999999899999999999999999997665 223456655555444311 11111 011
Q ss_pred c-----C--ceeEEEecCCCCcccchhhccCCCCCCe-eEEEEEEeeccCC----ccccccCC-CCCcEEEEeecCcccc
Q psy5309 276 Y-----G--KRYTVFSPRDNQPCMDHDRASGEGVGPQ-EYTLIKMRLVKPY----PAKLCCLD-SKPVFLVAATLRPETM 342 (1618)
Q Consensus 276 ~-----g--~~~v~w~p~~~t~lsd~Ev~~~~~~~~~-~y~~~~~~~~~~~----~~~~~~~~-~~~~~l~i~TTrPeTl 342 (1618)
. + ...+.|..+-.|..++-=+- +.|. .|..++.. ... ......+. ....+-++.+-+..-+
T Consensus 201 ikf~~~~~~~~l~~aTtRPETl~g~tav~----V~P~~~Y~~~~~~--~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l 274 (938)
T TIGR00395 201 IKFELEDGAFYFVAATLRPETVYGVTNCW----VNPTITYVIAEVG--GEKWITSKEAFENLSYQKLKYKPIEEVPGKQF 274 (938)
T ss_pred EEEEcCCCceEEEEeeCCcchhhcceeEE----ECCCCcEEEEEeC--CcEEEEeHHHHHhhhhcccceeEEEEEchHhc
Confidence 0 1 12445555555544432211 1221 23322210 000 00000000 0000111111111222
Q ss_pred ccCceEEeCCCCCceeecccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCC------------------cE
Q psy5309 343 YGQTNAWVRPDMAYIALSCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATG------------------EV 403 (1618)
Q Consensus 343 ~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~------------------~~ 403 (1618)
.|-+ ..+|+.+++++|+++. +.++ +|||+|+++|+|+..||..... -+
T Consensus 275 ~G~~-----------~~~P~~~~~ipil~~~~V~~~--~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i 341 (938)
T TIGR00395 275 IGKK-----------VHNPVVGPEVPILPAEFVDTT--KGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPV 341 (938)
T ss_pred cCCE-----------EECCCCCCeeEEeecceeecC--CCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCc
Confidence 2211 2245678889988764 7776 9999999999998777765210 01
Q ss_pred EEeccc---------------------------------------ccc---ccccCCCchhhhHHHHhhhhccCc-----
Q psy5309 404 FVCTER---------------------------------------SAR---NMAYQGFTEVEGKINVLLRLTGQV----- 436 (1618)
Q Consensus 404 ~i~~~~---------------------------------------~~~---~~~~~g~~~~~a~~~ii~~l~~~~----- 436 (1618)
.++..+ +.. ...|+|+.+++|+.+|++.|+..+
T Consensus 342 ~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g~~~~~ 421 (938)
T TIGR00395 342 PLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVM 421 (938)
T ss_pred cceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHCCCceEe
Confidence 122110 000 126999999999999999987643
Q ss_pred --------ceecCCEEEec-cccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCC
Q psy5309 437 --------CIRSGDECVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPW 507 (1618)
Q Consensus 437 --------l~r~g~~i~~~-l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~ 507 (1618)
|+|||++|+++ +++||||+|++..++..+.+++++++++|+.+++.+.+|++||+|||||||+||||||||
T Consensus 422 ~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~ 501 (938)
T TIGR00395 422 YEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPW 501 (938)
T ss_pred eecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccce
Confidence 56999999998 999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhcc
Q psy5309 508 DEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQY 587 (1618)
Q Consensus 508 ~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~ 587 (1618)
|+.|+++|+||+|+||++|++++++++ ..+++++.+++||||+|..+. .+..+|+|...++++|++|+|
T Consensus 502 d~~~~ieslsdstiY~~~~~i~~~l~~----------~~~~~~~l~~ev~D~~~~~~~-~~~~t~~~~~~~~~~~~ef~~ 570 (938)
T TIGR00395 502 DEKWLIESLSDSTIYMAYYTIAHYLNK----------DYYGNEQMTDEFFDYIFLGKG-DVKNTNIPLPAIQKLRREFEY 570 (938)
T ss_pred eecEEeeecchhhhhhhhccHHHHhhc----------cCCChHHCCcccCceEEECCC-ChhhcCCCHHHHHHHHHHHhh
Confidence 999999999999999999999987754 224556778999999987652 346778999989999999999
Q ss_pred ccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCC
Q psy5309 588 WYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEY 667 (1618)
Q Consensus 588 wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 667 (1618)
|||.|++++|+ .+ | .
T Consensus 571 ~yP~D~~~~Gk-----------------------------------------Di--------------------i--~-- 585 (938)
T TIGR00395 571 WYPLDWRISGK-----------------------------------------DL--------------------I--P-- 585 (938)
T ss_pred cCCceEEEEee-----------------------------------------cc--------------------c--c--
Confidence 99999988876 00 0 0
Q ss_pred CCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeee
Q psy5309 668 GNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYT 747 (1618)
Q Consensus 668 g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~ 747 (1618)
T Consensus 586 -------------------------------------------------------------------------------- 585 (938)
T TIGR00395 586 -------------------------------------------------------------------------------- 585 (938)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhccccc
Q psy5309 748 LPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTY 827 (1618)
Q Consensus 748 ~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~ 827 (1618)
+|++.
T Consensus 586 ----------------------------------------------~H~~~----------------------------- 590 (938)
T TIGR00395 586 ----------------------------------------------NHLTF----------------------------- 590 (938)
T ss_pred ----------------------------------------------chHHH-----------------------------
Confidence 11100
Q ss_pred ChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCCCCc
Q psy5309 828 HDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPE 907 (1618)
Q Consensus 828 P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~ 907 (1618)
|.- -+..
T Consensus 591 -----------------------------------~i~---------------~~~a----------------------- 597 (938)
T TIGR00395 591 -----------------------------------YIF---------------HHVA----------------------- 597 (938)
T ss_pred -----------------------------------HHH---------------HHHH-----------------------
Confidence 000 0000
Q ss_pred ceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccch
Q psy5309 908 VWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL 987 (1618)
Q Consensus 908 ~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~ 987 (1618)
-+|. ..|
T Consensus 598 --------------------------------~~~~----------------------~~~------------------- 604 (938)
T TIGR00395 598 --------------------------------IFPE----------------------KFW------------------- 604 (938)
T ss_pred --------------------------------cCCc----------------------ccc-------------------
Confidence 0000 002
Q ss_pred hhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcC
Q psy5309 988 NSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFS 1067 (1618)
Q Consensus 988 ~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yG 1067 (1618)
|+++++|||++.+|+|||||+||+|+|.+++++||
T Consensus 605 ---------------------------------------------Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yG 639 (938)
T TIGR00395 605 ---------------------------------------------PRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFG 639 (938)
T ss_pred ---------------------------------------------CcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcC
Confidence 68999999999999999999999999999999999
Q ss_pred ccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhc
Q psy5309 1068 ADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKM 1147 (1618)
Q Consensus 1068 aDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~ 1147 (1618)
+|++||||++++++++|++|+++.+....+.+.|+.+++...+..... .........|+|++++++.+++++.++|++|
T Consensus 640 aDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~-~~~~~~~~~D~wlls~l~~~i~~v~~a~e~~ 718 (938)
T TIGR00395 640 ADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESNL-ETGEETSFIDRWLESRMNAAIKETYEAMENF 718 (938)
T ss_pred hHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCccCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999887777676666666655432211 0111345689999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcc
Q psy5309 1148 LFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAI 1227 (1618)
Q Consensus 1148 ~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~ 1227 (1618)
+|++|++.+++.+.+.+|+|++..+ .....++.++++.+++||+|||||+||+||+.||++. +++.+.
T Consensus 719 ~~~~Al~~~l~~~~~~~n~Yl~~~~---~~~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~~---------sv~~~~ 786 (938)
T TIGR00395 719 QTRKAVKYALFDLQADVDWYRRRGG---VNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVGNEG---------FVSLAK 786 (938)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCc---chHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCC---------eEEecC
Confidence 9999996667889999999988632 2234578999999999999999999999999998542 456777
Q ss_pred cCCC
Q psy5309 1228 WGDE 1231 (1618)
Q Consensus 1228 ~p~~ 1231 (1618)
||..
T Consensus 787 wP~~ 790 (938)
T TIGR00395 787 FPEA 790 (938)
T ss_pred CCCC
Confidence 7753
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=653.82 Aligned_cols=307 Identities=20% Similarity=0.281 Sum_probs=246.1
Q ss_pred eccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhc-CcCceeecccCCCCcccCCCccccccccCCcceEeeh
Q psy5309 799 ALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLN-WLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAY 877 (1618)
Q Consensus 799 ~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~-~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~ 877 (1618)
+.++|||+++ +++++++++.++++.++|+..++++.+||+ +++||||||||+||||||+ .++ +++++|||+
T Consensus 184 ~~~~qwF~~l--~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~----~~~--~~~~iyvW~ 255 (556)
T PRK12268 184 RETEHFFLDL--PAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPW----PGF--EGKVFYVWF 255 (556)
T ss_pred EecceEEEEh--HHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCC----CCC--CCcEEEEee
Confidence 3589999999 799999999999999999999999999998 9999999999999999994 433 478999999
Q ss_pred hHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhcccc----ccceEeeccccc
Q psy5309 878 YTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWY----PVDLRCSGKDLI 953 (1618)
Q Consensus 878 ~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~----p~Dl~v~G~D~~ 953 (1618)
+++.+++... + . +.. .+ + ..++|+.|| |.++++.|+|++
T Consensus 256 da~~~y~~~~---~-----------~--------~~~-------~~---g-----~~~~~~~~w~ds~~~~~~~~G~D~~ 298 (556)
T PRK12268 256 DAVIGYISAS---K-----------E--------WAE-------RT---G-----DPEAWKEFWLDPETKSYYFIGKDNI 298 (556)
T ss_pred hHhhHHHHHH---H-----------H--------HHH-------hc---C-----CchHHHHHhCCCCCeEEEEEeeccC
Confidence 9998887420 0 0 000 00 0 023455566 456999999999
Q ss_pred ccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcC
Q psy5309 954 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWP 1033 (1618)
Q Consensus 954 ~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~p 1033 (1618)
++|..+ | |+.++..|. +.++|
T Consensus 299 ~Fh~~~--------~-------p~~l~~~~~--------------------------------------------~~~~P 319 (556)
T PRK12268 299 PFHSII--------W-------PAMLLGSGE--------------------------------------------PLKLP 319 (556)
T ss_pred cchHHH--------H-------HHHHHhcCC--------------------------------------------CCCCC
Confidence 988644 2 221111110 24468
Q ss_pred cEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHHHHHHHH
Q psy5309 1034 RGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTFIEWVKE 1108 (1618)
Q Consensus 1034 k~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~~~~l~~ 1108 (1618)
+.+++|||++.+|+|||||+||+|+|.+++++||+|++|||+++.++.++|.+|+++.+.. .+++++|+++|+.+
T Consensus 320 ~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~ 399 (556)
T PRK12268 320 DEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLS 399 (556)
T ss_pred CEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998999999999987542 45689999999888
Q ss_pred HHHhcc--cCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC------cchH-
Q psy5309 1109 ILATQS--TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG------GMHR- 1179 (1618)
Q Consensus 1109 ~l~~~~--~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~------~~~~- 1179 (1618)
++.... ..+ .......|+|++++++.+++.+.++|++|+|+.|++. ++++.+.+|+|++..+++. ....
T Consensus 400 ~~~~~~~~~~~-~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~-l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~ 477 (556)
T PRK12268 400 FIEKYFGGIVP-PGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAAT 477 (556)
T ss_pred HHHHhcCCcCC-CCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHcCCChhhhcCCHHHHHH
Confidence 776531 111 2234678999999999999999999999999999999 5788899999999988742 1112
Q ss_pred --HHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1180 --TLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1180 --~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
.++.++++.++++|+|||||+|||||+.||.+
T Consensus 478 ~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~ 511 (556)
T PRK12268 478 VLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGE 511 (556)
T ss_pred HHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCC
Confidence 34457889999999999999999999999863
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-66 Score=644.69 Aligned_cols=626 Identities=21% Similarity=0.269 Sum_probs=431.7
Q ss_pred ceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHH
Q psy5309 45 FFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRL 123 (1618)
Q Consensus 45 ~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm 123 (1618)
|.|..|=|+..|.+||||.++. ++.|...| ++|++|.++++| |.=|-|-|-.. ++-|-+..
T Consensus 35 f~I~~PPPNVTG~LHmGHAl~~----------tl~D~l~RykRM~G~~vl~~p----G~DhAGIaTq~----~VEk~l~~ 96 (877)
T COG0525 35 FSIDTPPPNVTGSLHMGHALNY----------TLQDILARYKRMRGYNVLWPP----GTDHAGIATQV----VVEKQLAA 96 (877)
T ss_pred cEEeCCCCCCCCcccchhhhhH----------HHHHHHHHHHHcCCCeeecCC----CCCCCCchHHH----HHHHHHHH
Confidence 8899999999999999999988 55566666 569999999998 44455543332 23333333
Q ss_pred cCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHH
Q psy5309 124 KGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQI 203 (1618)
Q Consensus 124 ~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~ 203 (1618)
.|. .-+-++-|...++...-.+++ .....+.
T Consensus 97 ~g~--------~r~d~gRe~Fl~~~weWk~e~-----------------------------------------~~~I~~Q 127 (877)
T COG0525 97 EGI--------TRHDLGREEFLKKCWEWKEES-----------------------------------------GGTIREQ 127 (877)
T ss_pred cCC--------CccccCHHHHHHHHHHHHHHH-----------------------------------------HHHHHHH
Confidence 343 334445555555542221111 0112356
Q ss_pred HHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc------ccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 204 MQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD------WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 204 ~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D------w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
|+++|.+.||-+++.+..+-..+.++..+-+|..-|+.+- |+..-.|-=++-+.+ .-..+|.+|.=
T Consensus 128 ~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe--------~~e~~g~L~~i 199 (877)
T COG0525 128 LRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVE--------YKEVEGKLYYI 199 (877)
T ss_pred HHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhc--------cceeeeeEEEE
Confidence 7899999999999888888889999999999999997654 665544432221111 11122333221
Q ss_pred c--------eeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEE
Q psy5309 278 K--------RYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAW 349 (1618)
Q Consensus 278 ~--------~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~ava 349 (1618)
+ ..+.=..+-+|-++|- .+.++ +--..+..+-+ -
T Consensus 200 ~y~l~~~~~~i~VATTRPEtmlgdt--------------AVaVh---P~DeRYk~LvG-----------------k---- 241 (877)
T COG0525 200 KYPLADGDGYLVVATTRPETLLGDT--------------AVAVH---PDDERYKHLVG-----------------K---- 241 (877)
T ss_pred EEecCCCCceEEEEecCccccccce--------------EEEEC---CCChhhHhhcC-----------------C----
Confidence 1 1111122222222221 11110 00001111111 1
Q ss_pred eCCCCCceeecccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCC----cEEEeccccccc----cccCCCc
Q psy5309 350 VRPDMAYIALSCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERSARN----MAYQGFT 420 (1618)
Q Consensus 350 V~P~~~Y~~~~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~~~~----~~~~g~~ 420 (1618)
.+..|+.|++++||++. ++++ ||||+|+|+|+||.+||+.+++ .+.++++++..+ ++|+||+
T Consensus 242 -------~v~lPl~~r~IpIiaD~~VD~e--FGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~ 312 (877)
T COG0525 242 -------EVILPLVGREIPIIADEYVDPE--FGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLD 312 (877)
T ss_pred -------EEecCCCCCeeeeecCcccCCc--CCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCc
Confidence 12336688999999986 7777 9999999999999999999864 367888877654 5899999
Q ss_pred hhhhHHHHhhhhccCc--------------ceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhh
Q psy5309 421 EVEGKINVLLRLTGQV--------------CIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGAS 486 (1618)
Q Consensus 421 ~~~a~~~ii~~l~~~~--------------l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~ 486 (1618)
+++||.+|++.|+..+ |.|||++|+|++++|||++++.++.+++.....++++++|+.+.+.+.+|
T Consensus 313 r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W 392 (877)
T COG0525 313 RFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDW 392 (877)
T ss_pred HHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHH
Confidence 9999999999999876 44999999999999999999999888777766679999999999999999
Q ss_pred hhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCC
Q psy5309 487 LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAP 566 (1618)
Q Consensus 487 ~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~ 566 (1618)
+++++|||||||+||||||| +.|.- ++|.+ .-
T Consensus 393 ~~~i~DWcISRQlwwGh~IP-----------------vWy~~-----------------------~~g~v------~v-- 424 (877)
T COG0525 393 MENIRDWCISRQLWWGHRIP-----------------VWYCK-----------------------ECGNV------VV-- 424 (877)
T ss_pred HhhCcCceeeeeeecCcccc-----------------eEEec-----------------------CCCcE------Ee--
Confidence 99999999999999999999 33331 23333 10
Q ss_pred CCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCccccc
Q psy5309 567 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIN 646 (1618)
Q Consensus 567 ~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1618)
++. . |.|...
T Consensus 425 ------~~~-~------------~~~~~~--------------------------------------------------- 434 (877)
T COG0525 425 ------AEE-E------------PEDPAA--------------------------------------------------- 434 (877)
T ss_pred ------CCc-c------------ccchhh---------------------------------------------------
Confidence 000 0 110000
Q ss_pred ceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHH
Q psy5309 647 CVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQK 726 (1618)
Q Consensus 647 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~ 726 (1618)
T Consensus 435 -------------------------------------------------------------------------------- 434 (877)
T COG0525 435 -------------------------------------------------------------------------------- 434 (877)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCccee
Q psy5309 727 KIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYL 806 (1618)
Q Consensus 727 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi 806 (1618)
.+ . | | .
T Consensus 435 ----~~--------------------------------~---~------------------------~--------~--- 440 (877)
T COG0525 435 ----AE--------------------------------K---C------------------------P--------K--- 440 (877)
T ss_pred ----hc--------------------------------c---C------------------------c--------h---
Confidence 00 0 0 0 0
Q ss_pred ecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhc
Q psy5309 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQG 886 (1618)
Q Consensus 807 ~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~ 886 (1618)
. .|
T Consensus 441 ----------------------------------------------------~--~~----------------------- 443 (877)
T COG0525 441 ----------------------------------------------------E--EL----------------------- 443 (877)
T ss_pred ----------------------------------------------------h--cc-----------------------
Confidence 0 00
Q ss_pred CccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhh
Q psy5309 887 GTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTA 966 (1618)
Q Consensus 887 ~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~ 966 (1618)
.-.+||+|.||.|+-.+-...+.+.+ ...++.+||.|+.+.|-|+
T Consensus 444 ----------------~qd~DVLDTWFSS~LwPfstlgWp~~-----t~~l~~fyPt~llvtG~DI-------------- 488 (877)
T COG0525 444 ----------------EQDEDVLDTWFSSSLWPFSTLGWPEE-----TPDLKKFYPTDLLVTGHDI-------------- 488 (877)
T ss_pred ----------------cCCcchhhhhhhcccccccccCCCCc-----chHHHhcCCCccccccchh--------------
Confidence 01246667777665422112222221 2344555566665555554
Q ss_pred ccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEcccee-eC
Q psy5309 967 IWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LN 1045 (1618)
Q Consensus 967 lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl-~~ 1045 (1618)
|.+|+..+++.+.. + .++.| ++.|+.||+|. .+
T Consensus 489 ---------------------------IffWvarmi~~~~~------~----------~~~~P---Fk~V~ihGLVrDe~ 522 (877)
T COG0525 489 ---------------------------IFFWVARMIMRGLH------L----------TGEVP---FKDVYIHGLVRDEQ 522 (877)
T ss_pred ---------------------------hHHHHHHHHHHHHH------h----------cCCCC---ccEEEEeeeEEcCC
Confidence 44555555554331 1 13333 68999999999 99
Q ss_pred CccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHHHHHhcccCCCC-CC
Q psy5309 1046 SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKEILATQSTLRTG-SQ 1121 (1618)
Q Consensus 1046 G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~~l~~~~~~~~~-~~ 1121 (1618)
|+|||||+||||||.++|++||+||+|||+++.+..++|++|+++.++ ++.+||||..+|++.+..+....+.. ..
T Consensus 523 G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~ 602 (877)
T COG0525 523 GRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLA 602 (877)
T ss_pred CCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccc
Confidence 999999999999999999999999999999999999999999999875 47789999999999877443221111 22
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHHHHHHHHhccc--C-----cchHHHHHHHHHHHHHhc
Q psy5309 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGF-FELQAARDKYRELTAAE--G-----GMHRTLVLRFVEVQALLL 1193 (1618)
Q Consensus 1122 ~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~-~~l~~~~n~Yi~~~k~~--~-----~~~~~~l~~~l~~l~~lL 1193 (1618)
....|+|+++++++++++++++|++|+|..|.+.+. |.+..+|++|++.+|+. + .....+|..+|..+++||
T Consensus 603 ~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~lrLL 682 (877)
T COG0525 603 LSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLL 682 (877)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999999999854 55678999999999963 1 245678899999999999
Q ss_pred CcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1194 CPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1194 aP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
+|||||+|||||+.+... .|+|.+.||..
T Consensus 683 hPfmPfiTEei~q~l~~~---------~si~~~~~P~~ 711 (877)
T COG0525 683 HPFMPFITEEIWQKLPGT---------ESIHLASWPEV 711 (877)
T ss_pred CCCCccchHHHHHhcCCC---------CeEEeccCCCc
Confidence 999999999999999654 35677777753
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=656.50 Aligned_cols=651 Identities=30% Similarity=0.503 Sum_probs=451.2
Q ss_pred cccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHHHHHcCCccccccccc
Q psy5309 58 LHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFH 135 (1618)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d 135 (1618)
+|+||.+++ ++.|+.+| +++++|.|++||.+ .+|.++.+-+-....+|-
T Consensus 1 lHiGH~~~~----------t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~------------------- 51 (897)
T PRK12300 1 LHVGHGRTY----------TIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDP------------------- 51 (897)
T ss_pred CccchhHHH----------HHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccch-------------------
Confidence 699999988 44555555 45899999999999 899998765422111110
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHH
Q psy5309 136 CTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIR 215 (1618)
Q Consensus 136 ~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~ 215 (1618)
+.. +.. .+.+|++.. .+. ++ ....+.+.+..... .+.++++|.+.||.|
T Consensus 52 ----~~~---~~~---~~~~gi~~~----------------~i~--~f--~~~~~~~~~~~~~~-~~~~~~lG~~~DW~r 100 (897)
T PRK12300 52 ----ETI---ELY---KSLYGIPEE----------------ELE--KF--KDPEYIVEYFSEEA-KEDMKRIGYSIDWRR 100 (897)
T ss_pred ----hHH---HHH---HHHcCCCHH----------------HHH--Hh--cCHHHHHHHhHHHH-HHHHHHhCcEEeCCC
Confidence 000 000 011233210 000 00 01223444444433 467899999999999
Q ss_pred HHhhhhhHHhhchhHHHHHHHHcCCccc--ccCceeecCCChhhhHHHHHHHHHHHhcC-------cccc----CceeEE
Q psy5309 216 KFADASHWLDHFPPLAVQDLRSIGIHVD--WRRTFITTDSNPFFDSFVRWQFMRLRDRH-------KIKY----GKRYTV 282 (1618)
Q Consensus 216 ~f~~~~~~~~~~~~~~~~~l~~lGi~~D--w~~~~~T~d~~p~y~~~v~~~f~~L~~kG-------~iy~----g~~~v~ 282 (1618)
+|.+..+.+.++..+++.+|.+.|+.+- --..|++.+.+|.-+.-+ ....+ +|.. +...+.
T Consensus 101 ~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~------~~~e~~~~~~~~~ikf~~~~~~~l~~ 174 (897)
T PRK12300 101 EFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDL------LDGEEPEIVEYTLIKFEESEDLILPA 174 (897)
T ss_pred CeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHH------hcCCCCCcceEEEEEEeCCCceEEEE
Confidence 9999999999999999999999997766 223356665555444322 11111 1111 122445
Q ss_pred EecCCCCcccchhhccCCCCCCe-eEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccC---ceE--EeCCC-C-
Q psy5309 283 FSPRDNQPCMDHDRASGEGVGPQ-EYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQ---TNA--WVRPD-M- 354 (1618)
Q Consensus 283 w~p~~~t~lsd~Ev~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~---~av--aV~P~-~- 354 (1618)
|..+-.|..++.=+. +.|. .|..++.. +..++++.-+.+.+.-. .-+ -+... .
T Consensus 175 ~TtrPeTl~g~tai~----V~P~~~Y~~~~~~---------------~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~ 235 (897)
T PRK12300 175 ATLRPETIFGVTNLW----VNPDATYVKAEVD---------------GEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELI 235 (897)
T ss_pred EECCcchhccceEEE----ECCCCcEEEEEEC---------------CEEEEEeHHHHHHHhcCcCCceEEEEeehHHhc
Confidence 666655555443221 1121 23333210 11222222222211110 000 00000 0
Q ss_pred CceeecccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCC--C---------c-EEEec--------------
Q psy5309 355 AYIALSCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTAT--G---------E-VFVCT-------------- 407 (1618)
Q Consensus 355 ~Y~~~~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~--~---------~-~~i~~-------------- 407 (1618)
.-...+|+.++.++|+.+. +.++ +|||+|++.|+|+..||.... + + +.++.
T Consensus 236 G~~~~~Pl~~~~ipil~~~~V~~~--~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~ 313 (897)
T PRK12300 236 GKKVKNPVTGKEVPILPADFVDPD--NGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVE 313 (897)
T ss_pred CCEEECCCCCCeEEEeccCeeecC--CCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHH
Confidence 1112346778888888764 7776 999999999999877776421 1 0 01221
Q ss_pred ------------------------ccccc---ccccCCCchhhhHHHHhhhhccCc-------------ceecCCEEEec
Q psy5309 408 ------------------------ERSAR---NMAYQGFTEVEGKINVLLRLTGQV-------------CIRSGDECVVA 447 (1618)
Q Consensus 408 ------------------------~~~~~---~~~~~g~~~~~a~~~ii~~l~~~~-------------l~r~g~~i~~~ 447 (1618)
.++.. ...|+|+.+++|+..|++.|+..+ |+|||++|+++
T Consensus 314 ~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~ 393 (897)
T PRK12300 314 KLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVK 393 (897)
T ss_pred HhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEE
Confidence 01111 156899999999999999997653 56999999997
Q ss_pred c-ccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEE
Q psy5309 448 L-CDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYY 526 (1618)
Q Consensus 448 l-~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~ 526 (1618)
+ ++||||+|++..||..+.+++++++++|+.++++|.+|++|++||||||||+|||||||++.|++|+++|+++||++|
T Consensus 394 ~~~~QWFi~~~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~ 473 (897)
T PRK12300 394 VVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYY 473 (897)
T ss_pred ecCCceEEEcCcHHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhHH
Confidence 5 799999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCcccccCCCCcccccccCCCcceeeeeeccCC---CCCCCCCCChhhHHHHHhhhccccccceeccccccCCC
Q psy5309 527 TVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSA---PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKL 603 (1618)
Q Consensus 527 ~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~---~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~ 603 (1618)
++++.+++ ..+++++.+..+|||+|+... ..++.+|+|...+.+||++|+||||.|+++.|+
T Consensus 474 ~i~~~l~~----------~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D~~~~Gk----- 538 (897)
T PRK12300 474 TIAHKIRE----------YGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGK----- 538 (897)
T ss_pred HHHHHHHH----------cCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCceEEEeee-----
Confidence 99876653 236778889999999998752 245678899999999999999999999987775
Q ss_pred CchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCC
Q psy5309 604 PWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQS 683 (1618)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~ 683 (1618)
.+ +
T Consensus 539 ------------------------------------Di--------------------i--------------------- 541 (897)
T PRK12300 539 ------------------------------------DL--------------------I--------------------- 541 (897)
T ss_pred ------------------------------------cc--------------------C---------------------
Confidence 00 0
Q ss_pred cccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceE
Q psy5309 684 QNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVT 763 (1618)
Q Consensus 684 ~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~ 763 (1618)
T Consensus 542 -------------------------------------------------------------------------------- 541 (897)
T PRK12300 542 -------------------------------------------------------------------------------- 541 (897)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcC
Q psy5309 764 SVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLH 843 (1618)
Q Consensus 764 ~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~ 843 (1618)
| .|+| |
T Consensus 542 ----~-------------------------~Hl~-------~-------------------------------------- 547 (897)
T PRK12300 542 ----P-------------------------NHLT-------F-------------------------------------- 547 (897)
T ss_pred ----c-------------------------cHHH-------H--------------------------------------
Confidence 0 0100 0
Q ss_pred ceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCC
Q psy5309 844 EYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKC 923 (1618)
Q Consensus 844 DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~ 923 (1618)
| ..-|..
T Consensus 548 -------------------~---------------~~~~~a--------------------------------------- 554 (897)
T PRK12300 548 -------------------F---------------IFNHVA--------------------------------------- 554 (897)
T ss_pred -------------------H---------------HHHHHH---------------------------------------
Confidence 0 000000
Q ss_pred CCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhh
Q psy5309 924 RVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIY 1003 (1618)
Q Consensus 924 ~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~ 1003 (1618)
.+|. ..|
T Consensus 555 ----------------~~~~----------------------~~~----------------------------------- 561 (897)
T PRK12300 555 ----------------IFPE----------------------EKW----------------------------------- 561 (897)
T ss_pred ----------------hcCC----------------------Ccc-----------------------------------
Confidence 0000 013
Q ss_pred hcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccc
Q psy5309 1004 KLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVE 1083 (1618)
Q Consensus 1004 ~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~ 1083 (1618)
|+++++|||++.+|+|||||+||+|+|.+++++||||++||||++++++++
T Consensus 562 -----------------------------Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~ 612 (897)
T PRK12300 562 -----------------------------PRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQ 612 (897)
T ss_pred -----------------------------CcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCC
Confidence 578999999999999999999999999999999999999999999889999
Q ss_pred cccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy5309 1084 DANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAA 1163 (1618)
Q Consensus 1084 D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~ 1163 (1618)
|.+|+++.++...+.+.++.+.+....... ........|+|++++++.+++++.++|++|+|++|++.+++++.+.
T Consensus 613 D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~----~~~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~ 688 (897)
T PRK12300 613 DADWREKEVESVRRQLERFYELAKELIEIG----GEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLND 688 (897)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHhcCC----CccccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999999887665444433333333222111 1123456899999999999999999999999999999877788899
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1164 RDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1164 ~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
+|+|++..++ ....++.++++.+++||+|||||+||++|+.||.+ . |+|.+.||..+
T Consensus 689 ~n~Yi~~~k~---~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~-~--------sv~~~~wP~~~ 745 (897)
T PRK12300 689 LRWYLRRVGE---ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE-G--------FVSLEKWPEPD 745 (897)
T ss_pred HHHHHHhcch---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-C--------eEEeCCCCCCC
Confidence 9999998765 56778999999999999999999999999999864 2 45566676533
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=633.36 Aligned_cols=300 Identities=18% Similarity=0.229 Sum_probs=236.2
Q ss_pred cCcceeecCCchHHHHHHHHHhcccccC---hHHHHHHHHhhc-CcCceeecccCCCCcccCCCccccccccCCcceEee
Q psy5309 801 CDQWYLDYGEPTWKAAAEQCLANMNTYH---DEVRRNFGASLN-WLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA 876 (1618)
Q Consensus 801 ~~QWfi~~~~~~~k~~~~~~i~~v~~~P---~~~k~~~~~~l~-~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~ 876 (1618)
+.+||+++ ..+++++++.+++-...| .+.+..+.+||+ +++||||||+..||+|+|.|. ..++++|||
T Consensus 202 ~~~~ff~L--s~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~------~~~~v~YVW 273 (801)
T PLN02610 202 TDHLFLEL--PLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEK------YKDKVFYVW 273 (801)
T ss_pred cceEEEEh--HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCC------CCCcEEEEe
Confidence 56777777 577777777776433333 344445668894 799999999999999999852 246899999
Q ss_pred hhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhcccccc--c---eEeeccc
Q psy5309 877 YYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPV--D---LRCSGKD 951 (1618)
Q Consensus 877 ~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~--D---l~v~G~D 951 (1618)
++++.+|+... ..+ .+.++.||+. | +++.|+|
T Consensus 274 fDAl~~Yis~~-----------------------------~~~--------------~~~~~~~W~~~~~~~~~hfiGKD 310 (801)
T PLN02610 274 FDAPIGYVSIT-----------------------------ACY--------------TPEWEKWWKNPENVELYQFMGKD 310 (801)
T ss_pred hhhHHHHHHHH-----------------------------hhh--------------hhHHHHhcCCcccceEEEEEeee
Confidence 99999999620 000 0125668865 6 7999999
Q ss_pred ccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCC
Q psy5309 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEM 1031 (1618)
Q Consensus 952 ~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~ 1031 (1618)
++++|.+| ||+.|...|. +.+
T Consensus 311 i~~fH~i~---------------wPa~L~a~g~--------------------------------------------~~~ 331 (801)
T PLN02610 311 NVPFHTVM---------------FPSTLLGTGE--------------------------------------------NWT 331 (801)
T ss_pred cchhHHHH---------------HHHHHHhCCC--------------------------------------------CcC
Confidence 99998666 4543321111 344
Q ss_pred cCcEEEEccceeeCCccceeccCcccChHHHHhh-cCccceEEeecccCcccccccccHHHHHH-----HHhhHHHHHHH
Q psy5309 1032 WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTFIEW 1105 (1618)
Q Consensus 1032 ~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~~~~ 1105 (1618)
+|++|++|||++.+|+|||||+||+|+|.+++++ ||+|++||||++.++.++|.+|+++.+.. ..++++|+++|
T Consensus 332 ~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R 411 (801)
T PLN02610 332 MMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINR 411 (801)
T ss_pred CCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999996 99999999999999999999999987543 56789999999
Q ss_pred HHHHHHh-----c-ccCCCCC--CCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC--
Q psy5309 1106 VKEILAT-----Q-STLRTGS--QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG-- 1175 (1618)
Q Consensus 1106 l~~~l~~-----~-~~~~~~~--~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~-- 1175 (1618)
++.++.. + +.++... .....|++++++++++++++.++|++|+|++|++. ++.+.+.+|+|++..+||.
T Consensus 412 ~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~-I~~l~~~~NkYIe~~kPW~L~ 490 (801)
T PLN02610 412 VLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKT-AMSISSEGNAYLQESQFWKLY 490 (801)
T ss_pred HHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhh
Confidence 9998873 2 2232211 13456899999999999999999999999999999 6789999999999999852
Q ss_pred --c--c---hHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1176 --G--M---HRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1176 --~--~---~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
. . ...++.++++.+++||+||||++|++||+.||.+
T Consensus 491 k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~ 533 (801)
T PLN02610 491 KEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLP 533 (801)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 1 1 1234567999999999999999999999999954
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=623.58 Aligned_cols=275 Identities=20% Similarity=0.312 Sum_probs=223.8
Q ss_pred cChHHHHHHH-HhhcC-cCceeecccC-CCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCC
Q psy5309 827 YHDEVRRNFG-ASLNW-LHEYACSRTY-GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAED 903 (1618)
Q Consensus 827 ~P~~~k~~~~-~~l~~-l~DW~ISRqr-~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~ 903 (1618)
.|+..++++. +||++ ++|||||||| .||+|||.|+ ++++|||+++...|+...
T Consensus 184 ~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~--------~~v~yVWfDA~~~y~s~~---------------- 239 (648)
T PRK12267 184 QPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDP--------KHVVYVWIDALLNYITAL---------------- 239 (648)
T ss_pred CCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCC--------CCEEEEcccchHHHHHHc----------------
Confidence 4778888888 99975 9999999997 6999999843 479999999999999620
Q ss_pred CCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCC
Q psy5309 904 LTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANG 983 (1618)
Q Consensus 904 l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g 983 (1618)
.++ ..+ .+.++.|||.|++++|+|++++|..| | |+.|.
T Consensus 240 --------------~~~------~~~----~~~~~~~wp~~~~~~GkDii~fH~i~--------w-------pa~l~--- 277 (648)
T PRK12267 240 --------------GYG------SDD----DELFKKFWPADVHLVGKDILRFHAIY--------W-------PIMLM--- 277 (648)
T ss_pred --------------CCC------CCC----chHHHhhcccceEEEeeeecchhHHH--------H-------HHHHH---
Confidence 000 000 12467788999999999999999766 3 32110
Q ss_pred ccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHH
Q psy5309 984 HLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1063 (1618)
Q Consensus 984 ~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii 1063 (1618)
.+ ..++|++|++|||++.+|+|||||+||+|+|.+++
T Consensus 278 --------------------------------------~~-----~~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l 314 (648)
T PRK12267 278 --------------------------------------AL-----GLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELV 314 (648)
T ss_pred --------------------------------------hC-----CCCCCcEEEecceEEECCceecccCCcccCHHHHH
Confidence 00 13359999999999999999999999999999999
Q ss_pred hhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHH
Q psy5309 1064 KKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLK 1136 (1618)
Q Consensus 1064 ~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~ 1136 (1618)
++||+|++||||+++++.++|.+|+++.+.. ..++++|+++|+..++... +..+........|+|++++++.+
T Consensus 315 ~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~ 394 (648)
T PRK12267 315 DRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEET 394 (648)
T ss_pred HHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHH
Confidence 9999999999999988999999999988643 4578999999998887653 22222223456799999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC---c--------chHHHHHHHHHHHHHhcCcCCCCchhHHH
Q psy5309 1137 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG---G--------MHRTLVLRFVEVQALLLCPVCPHVAEHVY 1205 (1618)
Q Consensus 1137 i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~---~--------~~~~~l~~~l~~l~~lLaP~~P~~aEei~ 1205 (1618)
++++.++|++|+|++|++. ++++++.+|+|++..+|+. . ....+++++++.++++|+|||||+||++|
T Consensus 395 ~~~v~~~~e~~~~~~al~~-i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~ 473 (648)
T PRK12267 395 LKNYEELMEELQFSRALEE-VWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIF 473 (648)
T ss_pred HHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 9999999999999999999 5788999999999998842 1 12235678899999999999999999999
Q ss_pred HHhCCC
Q psy5309 1206 QLLGKD 1211 (1618)
Q Consensus 1206 ~~Lgkd 1211 (1618)
+.||.+
T Consensus 474 ~~Lg~~ 479 (648)
T PRK12267 474 EQLGLE 479 (648)
T ss_pred HHcCCC
Confidence 999964
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=605.55 Aligned_cols=278 Identities=20% Similarity=0.307 Sum_probs=222.1
Q ss_pred cChHHHHHHHHhhc-CcCceeecccC-CCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCC
Q psy5309 827 YHDEVRRNFGASLN-WLHEYACSRTY-GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDL 904 (1618)
Q Consensus 827 ~P~~~k~~~~~~l~-~l~DW~ISRqr-~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l 904 (1618)
.|+..++.+.+||+ +++||||||++ .||+|+|.|+ ++++|||++++.+|+..- |.
T Consensus 249 ~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~--------~~viYVWfDAl~~Yls~~---~~------------ 305 (616)
T PLN02224 249 QPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDD--------KQTIYVWFDALLGYISAL---TE------------ 305 (616)
T ss_pred CCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCC--------CcEEEEehhhHHHHHHHh---cc------------
Confidence 47777788888995 69999999986 7999999853 489999999999999631 00
Q ss_pred CCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCc
Q psy5309 905 TPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGH 984 (1618)
Q Consensus 905 ~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~ 984 (1618)
+. . . .. ....+..|||.|++++|+|++++|.+| | |+.|..
T Consensus 306 -------~~------~-~-----~~---~~~~~~~~w~~~v~~iGKDii~fH~i~--------w-------pa~l~~--- 345 (616)
T PLN02224 306 -------DN------K-Q-----QN---LETAVSFGWPASLHLIGKDILRFHAVY--------W-------PAMLMS--- 345 (616)
T ss_pred -------cc------c-c-----cc---cchhhccCCCcceEEEeecccccHHHH--------H-------HHHHHH---
Confidence 00 0 0 00 011245688999999999999998666 3 332100
Q ss_pred cchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHh
Q psy5309 985 LLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVK 1064 (1618)
Q Consensus 985 ~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~ 1064 (1618)
...+||+.+++|||++.+|+|||||+||+|+|.++++
T Consensus 346 -------------------------------------------~g~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~ 382 (616)
T PLN02224 346 -------------------------------------------AGLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQ 382 (616)
T ss_pred -------------------------------------------CCCCCCcEEEecccEecCCccccccCCccCCHHHHHH
Confidence 0234799999999999999999999999999999999
Q ss_pred hcCccceEEeecccCcccccccccHHHHH-----HHHhhHHHHHHHHHHHHHhcc--cCCCCCCCCcchHHHHHHHHHHH
Q psy5309 1065 KFSADGMRLCLADSGDSVEDANFVESMAD-----AGILRLYTFIEWVKEILATQS--TLRTGSQDSFNDKVFLSEMNLKI 1137 (1618)
Q Consensus 1065 ~yGaDalRl~l~~~~~~~~D~~fs~~~~~-----~~~~kl~N~~~~l~~~l~~~~--~~~~~~~~~~~D~~~l~~l~~~i 1137 (1618)
+||+|++||||++.++..+|.+|+++.+. ...+.++|+++|++.++.... ..+........|.++++++++++
T Consensus 383 ~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li 462 (616)
T PLN02224 383 KFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLV 462 (616)
T ss_pred HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHH
Confidence 99999999999999999999999998653 356789999999988877532 11211122456889999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c--------chHHHHHHHHHHHHHhcCcCCCCchhHHH
Q psy5309 1138 KETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G--------MHRTLVLRFVEVQALLLCPVCPHVAEHVY 1205 (1618)
Q Consensus 1138 ~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~--------~~~~~l~~~l~~l~~lLaP~~P~~aEei~ 1205 (1618)
+++.++|++++|++|++. ++++.+.+|+|++..+|+. . ....+++++++.+++||+|||||+||+||
T Consensus 463 ~~v~~~me~~~~~~Al~~-i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~ 541 (616)
T PLN02224 463 EKAQTNYENLSLSSACEA-VLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIY 541 (616)
T ss_pred HHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999999999999 6999999999999988752 1 11235788999999999999999999999
Q ss_pred HHhCCC
Q psy5309 1206 QLLGKD 1211 (1618)
Q Consensus 1206 ~~Lgkd 1211 (1618)
+.||.+
T Consensus 542 ~~Lg~~ 547 (616)
T PLN02224 542 SQLGYS 547 (616)
T ss_pred HHhCCC
Confidence 999964
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-61 Score=609.60 Aligned_cols=302 Identities=18% Similarity=0.312 Sum_probs=248.1
Q ss_pred EeccCcceeecCCchHHHHHHHHHhc---ccccChHHHHHHHHhhcC-cCceeecccCC-CCcccCCCccccccccCCcc
Q psy5309 798 VALCDQWYLDYGEPTWKAAAEQCLAN---MNTYHDEVRRNFGASLNW-LHEYACSRTYG-LGTKLPWDEQWLIESLSDST 872 (1618)
Q Consensus 798 ~~~~~QWfi~~~~~~~k~~~~~~i~~---v~~~P~~~k~~~~~~l~~-l~DW~ISRqr~-WG~PIP~d~~w~~e~~~D~~ 872 (1618)
.+.++|||+++ .++++++++.+++ ..+.|+.+++.+.+||++ ++|||||||+. ||+|||. | .+++
T Consensus 178 ~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~---~-----~~~~ 247 (530)
T TIGR00398 178 LRDSEHYFFRL--SAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPN---D-----PNKV 247 (530)
T ss_pred EEecceEEEEh--HHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCC---C-----CCcE
Confidence 34589999999 7999999999984 667799999999999986 99999999999 9999999 4 2478
Q ss_pred eEeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccc-----eEe
Q psy5309 873 IYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVD-----LRC 947 (1618)
Q Consensus 873 iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~D-----l~v 947 (1618)
+|+|+++...++... | .. .+ ....++.|||+| +++
T Consensus 248 ~yvW~da~~~y~~~~---~---------------------------~~-----~~-----~~~~~~~~w~~~~~~~~v~~ 287 (530)
T TIGR00398 248 VYVWFDALIGYISSL---G---------------------------IL-----SG-----DTEDWKKWWNNDEDAELIHF 287 (530)
T ss_pred EEEeecchHHhHhhh---c---------------------------cc-----cC-----ChhhHHHhCCCCCCceEEEE
Confidence 999999988887520 0 00 00 013467799999 999
Q ss_pred ecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCC
Q psy5309 948 SGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGD 1027 (1618)
Q Consensus 948 ~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~ 1027 (1618)
.|+|++++|..| | |+.++. +
T Consensus 288 ~G~Di~~~h~~~--------~-------~a~l~~-----------------------------------------~---- 307 (530)
T TIGR00398 288 IGKDIVRFHTIY--------W-------PAMLMG-----------------------------------------L---- 307 (530)
T ss_pred EecccchhHHHH--------H-------HHHHHh-----------------------------------------C----
Confidence 999999998666 3 221100 0
Q ss_pred CCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHH
Q psy5309 1028 EPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTF 1102 (1618)
Q Consensus 1028 ~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~ 1102 (1618)
..++|+++++|||++.+|+|||||+||+|+|.+++++||+|++|||+++.++..+|.+|+++.+.. .+++++|+
T Consensus 308 -~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~ 386 (530)
T TIGR00398 308 -GLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNL 386 (530)
T ss_pred -CCCCCCEEEeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 123589999999999889999999999999999999999999999999988899999999987643 35789999
Q ss_pred HHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC-----
Q psy5309 1103 IEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----- 1175 (1618)
Q Consensus 1103 ~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----- 1175 (1618)
++|+.+++.+. +..+........|++++++++++++.+.++|++|+|+.|++. ++++.+.+|+|++.++|+.
T Consensus 387 ~~r~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 387 LNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALRE-IMKLADRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHHHHHHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHhcCCChhhcCCh
Confidence 99988877653 122222223567999999999999999999999999999999 7888899999999998742
Q ss_pred ---cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1176 ---GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1176 ---~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
.....++.++++.++++|+|||||+||+||+.||.+
T Consensus 466 ~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 504 (530)
T TIGR00398 466 PRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE 504 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 123467889999999999999999999999999865
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=622.91 Aligned_cols=299 Identities=20% Similarity=0.300 Sum_probs=241.7
Q ss_pred ccCcceeecCCchHHHHHHHHHhc-ccccChHHHHHHHHhhc-CcCceeecccCCC-CcccCCCccccccccCCcceEee
Q psy5309 800 LCDQWYLDYGEPTWKAAAEQCLAN-MNTYHDEVRRNFGASLN-WLHEYACSRTYGL-GTKLPWDEQWLIESLSDSTIYMA 876 (1618)
Q Consensus 800 ~~~QWfi~~~~~~~k~~~~~~i~~-v~~~P~~~k~~~~~~l~-~l~DW~ISRqr~W-G~PIP~d~~w~~e~~~D~~iy~~ 876 (1618)
.++|||+++ .++++++++.+++ ..| |+..++.+.+||+ +++|||||||+.| |+|+|.++ ++++|||
T Consensus 183 ~~~~~f~~l--~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~--------~~~iyVW 251 (673)
T PRK00133 183 ESEHFFFKL--PRFEEFLKEWITRSGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAP--------GKVFYVW 251 (673)
T ss_pred ecceEEEEH--HHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCCCC--------CeEEEEc
Confidence 478999999 7999999999865 565 9999999999995 7999999999999 99999732 4789999
Q ss_pred hhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccc-----eEeeccc
Q psy5309 877 YYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVD-----LRCSGKD 951 (1618)
Q Consensus 877 ~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~D-----l~v~G~D 951 (1618)
++++.+|+... + .+++. . ..+.++.||+.+ +++.|+|
T Consensus 252 ~dal~~Yl~~~---~--------------------------~~~~~----~-----~~~~~~~~w~~~~~~~~v~~iGkD 293 (673)
T PRK00133 252 LDAPIGYISST---K--------------------------NLCDK----R-----GGLDWDEYWKKDSDTELYHFIGKD 293 (673)
T ss_pred ccchhhhhHHH---h--------------------------hhccc----c-----cchhHHHhcCCCCCceEEEEEeec
Confidence 99999998520 0 00000 0 013467888433 7999999
Q ss_pred ccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCC
Q psy5309 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEM 1031 (1618)
Q Consensus 952 ~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~ 1031 (1618)
++++|.+| ||+.|++. ..+
T Consensus 294 i~~fH~i~---------------wpa~l~a~----------------------------------------------g~~ 312 (673)
T PRK00133 294 IIYFHTLF---------------WPAMLEGA----------------------------------------------GYR 312 (673)
T ss_pred chhHHHHH---------------HHHHHHhC----------------------------------------------CCC
Confidence 99998665 34432211 234
Q ss_pred cCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCccc-ccccccHHHHH-----HHHhhHHHHHHH
Q psy5309 1032 WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV-EDANFVESMAD-----AGILRLYTFIEW 1105 (1618)
Q Consensus 1032 ~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~-~D~~fs~~~~~-----~~~~kl~N~~~~ 1105 (1618)
+|++|++||||+.+|+|||||+||+|+|.+++++||+|++|||+++.++.+ +|.+|+++.+. ..+++++|+++|
T Consensus 313 lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R 392 (673)
T PRK00133 313 LPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASR 392 (673)
T ss_pred CCCEEeeeccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998998 99999998743 356789999999
Q ss_pred HHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----
Q psy5309 1106 VKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G----- 1176 (1618)
Q Consensus 1106 l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~----- 1176 (1618)
+.+++.+... ........|++++++++.++.++.++|++|+|+.|++. ++++.+.+|+|++..+|+. .
T Consensus 393 ~~~~~~k~~~--~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~-l~~l~~~~N~yi~~~kpw~~~~~~~~~~~ 469 (673)
T PRK00133 393 TAGFINKRFD--GKLPDALADPELLEEFEAAAEKIAEAYEAREFRKALRE-IMALADFANKYVDDNEPWKLAKQDGERLQ 469 (673)
T ss_pred HHHHHHHhcC--CCCCCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHH
Confidence 9888764211 11113456999999999999999999999999999999 6788999999999999852 1
Q ss_pred chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1177 MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1177 ~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
....+++++++.++++|+|||||+||+||+.||.+
T Consensus 470 ~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~ 504 (673)
T PRK00133 470 AVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLE 504 (673)
T ss_pred HHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCC
Confidence 12234567889999999999999999999999964
|
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=585.31 Aligned_cols=302 Identities=23% Similarity=0.327 Sum_probs=248.2
Q ss_pred cCcceeecCCchHHHHHHHHHhc--ccccChHHHHHHHHhhc-CcCceeecc-cCCCCcccCCCccccccccCCcceEee
Q psy5309 801 CDQWYLDYGEPTWKAAAEQCLAN--MNTYHDEVRRNFGASLN-WLHEYACSR-TYGLGTKLPWDEQWLIESLSDSTIYMA 876 (1618)
Q Consensus 801 ~~QWfi~~~~~~~k~~~~~~i~~--v~~~P~~~k~~~~~~l~-~l~DW~ISR-qr~WG~PIP~d~~w~~e~~~D~~iy~~ 876 (1618)
+..+|+++ +.+.+++++.+++ -...|++.++.+.+||+ +++|||||| ...||+|+|.++ ++++|||
T Consensus 187 ~~hyFf~L--~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p--------~kv~YVW 256 (558)
T COG0143 187 EEHYFFRL--SKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDP--------GKVIYVW 256 (558)
T ss_pred ceeEEEEH--HHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCC--------CCEEEEe
Confidence 44577777 5777777787764 34579999999999995 699999999 999999999754 4899999
Q ss_pred hhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccc----eEeecccc
Q psy5309 877 YYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVD----LRCSGKDL 952 (1618)
Q Consensus 877 ~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~D----l~v~G~D~ 952 (1618)
++++.+|+..- |. .+. ......|+.||+.| +++.|||+
T Consensus 257 fDAligYisa~---~~--------------------------------~~~---~~~~~~~~~~W~~~~~e~vhfIGKDi 298 (558)
T COG0143 257 FDALIGYISAL---GE--------------------------------LAE---IGDDEDFKKFWPADDTELVHFIGKDI 298 (558)
T ss_pred eccHHHHHHHh---cc--------------------------------hhc---cCChHHHHhhCCCCCceEEEEecccc
Confidence 99999999630 00 000 01235688999998 89999999
Q ss_pred cccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCc
Q psy5309 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMW 1032 (1618)
Q Consensus 953 ~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~ 1032 (1618)
+++|.+| ||+.|...| .++
T Consensus 299 i~FHav~---------------wPamL~~~~----------------------------------------------~~l 317 (558)
T COG0143 299 IRFHAVY---------------WPAMLMAAG----------------------------------------------LPL 317 (558)
T ss_pred CcchhhH---------------HHHHHHhCC----------------------------------------------CCC
Confidence 9999776 565432222 336
Q ss_pred CcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHHHHHHH
Q psy5309 1033 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTFIEWVK 1107 (1618)
Q Consensus 1033 pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~~~~l~ 1107 (1618)
|+++++|||++.+|+|||||+||+|+|.+++++||+|++||||++..|.++|.+|+++.+.+ ..++++|+++|++
T Consensus 318 P~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~ 397 (558)
T COG0143 318 PTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTL 397 (558)
T ss_pred CCEEEeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988644 5579999999999
Q ss_pred HHHHhcc--cCCCCC-CCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcc-------
Q psy5309 1108 EILATQS--TLRTGS-QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM------- 1177 (1618)
Q Consensus 1108 ~~l~~~~--~~~~~~-~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~------- 1177 (1618)
+++++.. .++... .....|+.+++.+..+..++.++|+.++|++|++. ++.+...+|.|++..+||...
T Consensus 398 ~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~-i~~l~~~~N~Yi~~~~PW~l~k~~~~~~ 476 (558)
T COG0143 398 GFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEE-IMALASRANKYIDEQAPWKLAKEDKRER 476 (558)
T ss_pred HHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHhhcCCCchhhccCcHHH
Confidence 9998752 333221 11267899999999999999999999999999999 799999999999999985311
Q ss_pred ---hHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCc
Q psy5309 1178 ---HRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212 (1618)
Q Consensus 1178 ---~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~ 1212 (1618)
....+.++++.++.+|+||||.+|+++|++||.+.
T Consensus 477 ~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~ 514 (558)
T COG0143 477 LATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEE 514 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCcc
Confidence 12345778899999999999999999999999753
|
|
| >KOG0432|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=565.00 Aligned_cols=677 Identities=18% Similarity=0.255 Sum_probs=450.6
Q ss_pred hHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCe
Q psy5309 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKF 90 (1618)
Q Consensus 12 ~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f 90 (1618)
...+|..|-.+|++.+.|...... .+.+.|-++.|=|=--|.+|+||.-+. ++.|...| .+|.++
T Consensus 48 p~~vE~~wy~ww~k~g~fkp~~~~----~~~~~f~i~~PPPNVTG~LHiGHALt~----------aiqD~i~R~~rm~G~ 113 (995)
T KOG0432|consen 48 PAYVESAWYKWWEKQGFFKPEYGP----NPGGVFVIPLPPPNVTGSLHIGHALTV----------AIQDALARYNRMHGY 113 (995)
T ss_pred ccchHHHHHHHHHHcCCCCcccCC----CCCCcceeecCCCCcccccchhHHHHH----------HHHHHHHHHHHhcCC
Confidence 356999999999999999776652 246788888888777799999997766 33444444 347888
Q ss_pred EEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy5309 91 FTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQT 170 (1618)
Q Consensus 91 ~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~ 170 (1618)
.+++.| |.=|-|-|-..+.--.++|= .|. --|-+..+..+.++..-.+++|-.
T Consensus 114 ~vlw~P----G~DHAGIATQ~VVEK~l~~~---~~~--------~Rh~lgRe~F~~~vw~Wk~e~g~~------------ 166 (995)
T KOG0432|consen 114 QVLWVP----GTDHAGIATQVVVEKQLARE---GGK--------TRHDLGREEFLKEVWEWKEEYGGR------------ 166 (995)
T ss_pred eeeecC----CccccchhHHHHHHHHHHHh---cCc--------chhhcCHHHHHHHHHHHHHHhCcc------------
Confidence 888887 55666665554444333332 221 123344555555553333334322
Q ss_pred CCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc------c
Q psy5309 171 DKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD------W 244 (1618)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D------w 244 (1618)
..+.++++|.+-||-|++.+..+-..+.....+-.|..-|+.+- |
T Consensus 167 -----------------------------I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW 217 (995)
T KOG0432|consen 167 -----------------------------IYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNW 217 (995)
T ss_pred -----------------------------HHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeee
Confidence 12457889999999999887555555555555566666665432 3
Q ss_pred cCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCcccccc
Q psy5309 245 RRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCC 324 (1618)
Q Consensus 245 ~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 324 (1618)
.-.- ...+.+-+.-++......|--.. -.|..|+.| ..+-|..++..+.+...-.
T Consensus 218 ~~~L----------------~saiSdiEVe~~ei~~~t~l~vp---Gyd~~VeFG------~L~~faY~v~gs~~~i~Va 272 (995)
T KOG0432|consen 218 CPAL----------------RSAISDIEVESVEIPGRTLLSVP---GYDTKVEFG------VLYSFAYPVEGSDEEIVVA 272 (995)
T ss_pred chhH----------------HhhhhhheecceecCCCceEecC---CCCcceeee------eeeEEEEeccCCCCeEEEe
Confidence 3221 12222223323221111111111 123333333 2223333433222111000
Q ss_pred CC-CCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCC-
Q psy5309 325 LD-SKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATG- 401 (1618)
Q Consensus 325 ~~-~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~- 401 (1618)
.. .+...-.+|++.+.+-.....+ | --...+|+.|+.+|||++. ++++ ||||+|+|||+||-+||+++++
T Consensus 273 TTRpET~lGDvAvAVhP~D~RYk~l--h---Gk~~~hP~~~r~lPiI~D~~Vd~~--fGTGaVKITPaHd~nDyEvgkRh 345 (995)
T KOG0432|consen 273 TTRPETILGDVAVAVHPDDDRYKHL--H---GKFVKHPFTGRKLPIICDIAVDME--FGTGAVKITPAHDPNDYEVGKRH 345 (995)
T ss_pred cCCccccccceeEEeCCCCcccccc--c---CceeecCCCCCccceeeccccccc--ccccceEecCCCChhHHHHHHhc
Confidence 11 1112334555555554444211 1 1255678899999999985 6666 9999999999999999999864
Q ss_pred ---cEEEeccccccc---cccCCCchhhhHHHHhhhhccCc--------------ceecCCEEEeccccceeeccCCchH
Q psy5309 402 ---EVFVCTERSARN---MAYQGFTEVEGKINVLLRLTGQV--------------CIRSGDECVVALCDQWYLDYGEPTW 461 (1618)
Q Consensus 402 ---~~~i~~~~~~~~---~~~~g~~~~~a~~~ii~~l~~~~--------------l~r~g~~i~~~l~~QWfl~~~~~~~ 461 (1618)
-+.|+++++..+ ..|+||.||+||.+|++.|+..+ |.|||+.|+|++++||||+|+.|+.
T Consensus 346 ~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~ 425 (995)
T KOG0432|consen 346 NLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAK 425 (995)
T ss_pred CCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHH
Confidence 367777776543 58999999999999999998654 7799999999999999999999999
Q ss_pred HHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCC
Q psy5309 462 KAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 541 (1618)
Q Consensus 462 k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~ 541 (1618)
+++.....++++++|+...+++..|+++++|||||||+||||||| ||++.-.
T Consensus 426 ~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIP-----------------Ay~v~~~----------- 477 (995)
T KOG0432|consen 426 KALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIP-----------------AYFVNLS----------- 477 (995)
T ss_pred HHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccc-----------------eeeeecc-----------
Confidence 999888889999999999999999999999999999999999999 5555311
Q ss_pred CCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhh
Q psy5309 542 GNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYM 621 (1618)
Q Consensus 542 ~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1618)
++.+ +.|+=+.+
T Consensus 478 ---------~~~~-----------------------------------ee~~Wvva------------------------ 489 (995)
T KOG0432|consen 478 ---------DGRA-----------------------------------EEDYWVVA------------------------ 489 (995)
T ss_pred ---------cCCC-----------------------------------ccceeEEe------------------------
Confidence 0000 11111111
Q ss_pred hhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhc
Q psy5309 622 AYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKG 701 (1618)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 701 (1618)
T Consensus 490 -------------------------------------------------------------------------------- 489 (995)
T KOG0432|consen 490 -------------------------------------------------------------------------------- 489 (995)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeeecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcC
Q psy5309 702 FYDGIMLVGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKK 781 (1618)
Q Consensus 702 ~~~G~~~~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~ 781 (1618)
.+-.||+++-.+.. |
T Consensus 490 -------------rseeeA~ekaa~k~---g------------------------------------------------- 504 (995)
T KOG0432|consen 490 -------------RSEEEAREKAAEKF---G------------------------------------------------- 504 (995)
T ss_pred -------------CCHHHHHHHHHHHh---C-------------------------------------------------
Confidence 11222333222110 0
Q ss_pred CCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCc
Q psy5309 782 KPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDE 861 (1618)
Q Consensus 782 ~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~ 861 (1618)
|.+
T Consensus 505 ----------------------------------------------------------------------------~~~- 507 (995)
T KOG0432|consen 505 ----------------------------------------------------------------------------PGK- 507 (995)
T ss_pred ----------------------------------------------------------------------------Ccc-
Confidence 000
Q ss_pred cccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccC-CCCCCCCCChhhHHHHHHhhccc
Q psy5309 862 QWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAA-PFPPKCRVPKAKLDIMRREFQYW 940 (1618)
Q Consensus 862 ~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~w 940 (1618)
+-++ ...|||.|.||.|+- |++ ..+.|.+ ..++...
T Consensus 508 --------~~~L-----------------------------~qDpDVLDTWFSS~L~PfS-~lGWP~~-----t~d~~~f 544 (995)
T KOG0432|consen 508 --------EFTL-----------------------------EQDPDVLDTWFSSGLWPFS-TLGWPEE-----TKDFKNF 544 (995)
T ss_pred --------ccee-----------------------------ecCccHHHhhhhcccccch-hcCCccc-----cccHHhc
Confidence 0000 123566777776654 333 2223322 2456677
Q ss_pred cccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhh
Q psy5309 941 YPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYI 1020 (1618)
Q Consensus 941 ~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~ 1020 (1618)
||.++.-.|.|+..| | +.-.++.|.
T Consensus 545 yP~sllETG~DILfF------------W-----------------------------VaRMvmLg~-------------- 569 (995)
T KOG0432|consen 545 YPLSLLETGHDILFF------------W-----------------------------VARMVMLGL-------------- 569 (995)
T ss_pred CCchhhhcCchHHHH------------H-----------------------------HHHHHHhhh--------------
Confidence 888888888775444 3 211122111
Q ss_pred hhhccCCCCCCcCcEEEEcccee-eCCccceeccCcccChHHHHh------------------------------hc---
Q psy5309 1021 HTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVK------------------------------KF--- 1066 (1618)
Q Consensus 1021 ~~~~~p~~~~~~pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~------------------------------~y--- 1066 (1618)
.+.++.| ++.|+.||+|. .+|+|||||+||||||.|+|+ .|
T Consensus 570 --kLtG~lP---F~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnG 644 (995)
T KOG0432|consen 570 --KLTGELP---FKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNG 644 (995)
T ss_pred --hhcCCCC---chheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCC
Confidence 1124334 68999999999 899999999999999999998 34
Q ss_pred ----CccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHHHHHhcccCCC-----CCCCCcchHHHHHHHH
Q psy5309 1067 ----SADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKEILATQSTLRT-----GSQDSFNDKVFLSEMN 1134 (1618)
Q Consensus 1067 ----GaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~~l~~~~~~~~-----~~~~~~~D~~~l~~l~ 1134 (1618)
|.|||||.|++.+..+.|++++-..+. .+.|||||..+|++..+.+. ..+. .......|+|++++++
T Consensus 645 IpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~-~~p~~~~~~~~~~~~~d~WIlsrL~ 723 (995)
T KOG0432|consen 645 IPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGEN-FVPSPTEDLSGNESLVDEWILSRLA 723 (995)
T ss_pred CcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccC-CCCCcccccCCCcchhHHHHHHHHH
Confidence 999999999999889999999987664 47799999999999875442 1111 1111228999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHH-HHHHHHHHHHHHHhcc--cC------cchHHHHHHHHHHHHHhcCcCCCCchhHHH
Q psy5309 1135 LKIKETEDHYTKMLFKEALRTGF-FELQAARDKYRELTAA--EG------GMHRTLVLRFVEVQALLLCPVCPHVAEHVY 1205 (1618)
Q Consensus 1135 ~~i~~v~~~~e~~~f~~al~~~~-~~l~~~~n~Yi~~~k~--~~------~~~~~~l~~~l~~l~~lLaP~~P~~aEei~ 1205 (1618)
..++++.+.|+.|+|..|.+++. |-+.++|+-|++.+|+ ++ ..+..+|+.++...++||+|||||+|||+|
T Consensus 724 ~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~ 803 (995)
T KOG0432|consen 724 EAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELW 803 (995)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999999854 3446899999999998 21 234568899999999999999999999999
Q ss_pred HHhCCCc
Q psy5309 1206 QLLGKDL 1212 (1618)
Q Consensus 1206 ~~Lgkd~ 1212 (1618)
|.|....
T Consensus 804 qrlP~r~ 810 (995)
T KOG0432|consen 804 QRLPRRK 810 (995)
T ss_pred HhcccCC
Confidence 9996543
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-58 Score=580.28 Aligned_cols=278 Identities=22% Similarity=0.344 Sum_probs=221.4
Q ss_pred cChHHHHHHHHhhc-CcCceeecc-cCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCC
Q psy5309 827 YHDEVRRNFGASLN-WLHEYACSR-TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDL 904 (1618)
Q Consensus 827 ~P~~~k~~~~~~l~-~l~DW~ISR-qr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l 904 (1618)
.|+..++++.+||+ +++|||||| |+.||+|||.++ ++++|+|+++...++... |
T Consensus 182 ~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~--------~~~~~vWfda~~~y~s~~---~------------- 237 (511)
T PRK11893 182 QPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDP--------KHVIYVWFDALTNYLTAL---G------------- 237 (511)
T ss_pred CCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCC--------CceEEEEecCcHHHHhHh---c-------------
Confidence 48888999999997 699999999 999999999942 478999999888877410 0
Q ss_pred CCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCc
Q psy5309 905 TPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGH 984 (1618)
Q Consensus 905 ~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~ 984 (1618)
.+..+ ..+++.+.+|||.|++++|+|++++|..+ | |+
T Consensus 238 --------------~p~~~-------~~~~~~~~~~~~~D~~~~G~D~~~~h~~~--------~-------~a------- 274 (511)
T PRK11893 238 --------------YPDDE-------ELLAELFNKYWPADVHLIGKDILRFHAVY--------W-------PA------- 274 (511)
T ss_pred --------------ccccc-------ccchhHHHhcCCCcceEecccccccchhH--------H-------HH-------
Confidence 00000 01234577899999999999999998665 2 11
Q ss_pred cchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHh
Q psy5309 985 LLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVK 1064 (1618)
Q Consensus 985 ~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~ 1064 (1618)
++.+. ..++|+.+++|||++.+|+|||||+||+|+|.++++
T Consensus 275 -----------------------------------~~~a~----~~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~ 315 (511)
T PRK11893 275 -----------------------------------FLMAA----GLPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVD 315 (511)
T ss_pred -----------------------------------HHHhC----CCCCCCEEEeeccEEECCeeecccCCcEEcHHHHHH
Confidence 11111 124689999999999999999999999999999999
Q ss_pred hcCccceEEeecccCcccccccccHHHHHHH-----HhhHHHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHHH
Q psy5309 1065 KFSADGMRLCLADSGDSVEDANFVESMADAG-----ILRLYTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLKI 1137 (1618)
Q Consensus 1065 ~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~-----~~kl~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~i 1137 (1618)
+||+|++|||+++.+++.+|++|+++.+... .+.++|+.+++...+... +..+........|++++++++.++
T Consensus 316 ~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~ 395 (511)
T PRK11893 316 EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALL 395 (511)
T ss_pred HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHH
Confidence 9999999999999989999999999887543 357888888887776543 122222234567899999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCc---------chHHHHHHHHHHHHHhcCcCCCCchhHHHHHh
Q psy5309 1138 KETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGG---------MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL 1208 (1618)
Q Consensus 1138 ~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~---------~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~L 1208 (1618)
+.+.++|++|+++.|++. ++++++.+|+|++..+|+.. ....++.++++.++++|+|||||+||+||+.|
T Consensus 396 ~~v~~~~~~~~~~~a~~~-l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L 474 (511)
T PRK11893 396 ERVRAAMDNLAFDKALEA-ILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQL 474 (511)
T ss_pred HHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHh
Confidence 999999999999999999 67888999999998887421 12245778899999999999999999999999
Q ss_pred CCC
Q psy5309 1209 GKD 1211 (1618)
Q Consensus 1209 gkd 1211 (1618)
|.+
T Consensus 475 ~~~ 477 (511)
T PRK11893 475 GVE 477 (511)
T ss_pred CCC
Confidence 864
|
|
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=559.94 Aligned_cols=154 Identities=27% Similarity=0.484 Sum_probs=133.9
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+|+.|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|||..|++.. +..
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~------~~~--------- 65 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKL------GIE--------- 65 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHh------ccc---------
Confidence 57999999999999999999999999999999999999999999999999999999988631 111
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
++. ..+++++++.+ +|.++++++.+.+++++++||+++||++.
T Consensus 66 -----------------~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~ 108 (382)
T cd00817 66 -----------------GKT------------------RHDLGREEFLE--KCWEWKEESGGKIREQLKRLGASVDWSRE 108 (382)
T ss_pred -----------------ccc------------------hhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHhCceeecCCC
Confidence 000 01233444433 25789999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchh
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHD 295 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~E 295 (1618)
+.|++ |.|.+.|+++|.+|+++|+||++.++++|||.|+|+|||+|
T Consensus 109 ~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~e 154 (382)
T cd00817 109 YFTMD--PGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIE 154 (382)
T ss_pred cCCCC--HHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcch
Confidence 99998 88999999999999999999999999999999999998865
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=601.40 Aligned_cols=193 Identities=22% Similarity=0.265 Sum_probs=158.4
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHh-------------------------------------hcCccceEEe
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVK-------------------------------------KFSADGMRLC 1074 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~-------------------------------------~yGaDalRl~ 1074 (1618)
++.|++||+|+ .+|+|||||+||||+|.++++ +||||++|||
T Consensus 569 fk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~ 648 (995)
T PTZ00419 569 FKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFG 648 (995)
T ss_pred hHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHH
Confidence 48899999999 699999999999999999999 8999999999
Q ss_pred ecccCcccccccccHHHHH---HHHhhHHHHHHHHHHHHHhcccCCC--------CCCCCcchHHHHHHHHHHHHHHHHH
Q psy5309 1075 LADSGDSVEDANFVESMAD---AGILRLYTFIEWVKEILATQSTLRT--------GSQDSFNDKVFLSEMNLKIKETEDH 1143 (1618)
Q Consensus 1075 l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~~l~~~~~~~~--------~~~~~~~D~~~l~~l~~~i~~v~~~ 1143 (1618)
+++.++.++|++|+.+.+. .+++++||+.+|++.++........ .......|+|++++++.++++++++
T Consensus 649 l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~ 728 (995)
T PTZ00419 649 LLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEG 728 (995)
T ss_pred HHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999899999999998764 4667999999999877654211000 1224467999999999999999999
Q ss_pred HhhccHHHHHHHHH-HHHHHHHHHHHHHhcccC---------cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCcc
Q psy5309 1144 YTKMLFKEALRTGF-FELQAARDKYRELTAAEG---------GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLI 1213 (1618)
Q Consensus 1144 ~e~~~f~~al~~~~-~~l~~~~n~Yi~~~k~~~---------~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~ 1213 (1618)
|++|+|+.|++.++ |.+.++||+|++.+|++. ...+.++.++++.+++||+|||||+|||||+.|+....
T Consensus 729 ~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~~ 808 (995)
T PTZ00419 729 FKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYLR 808 (995)
T ss_pred HHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccCC
Confidence 99999999999954 336789999999998742 12456789999999999999999999999999974210
Q ss_pred ccccchhhhhhhcccCC
Q psy5309 1214 QNHLTFFIYIHTAIWGD 1230 (1618)
Q Consensus 1214 svh~~~f~s~~~~~~p~ 1230 (1618)
+ -.|+|.+.||.
T Consensus 809 --~---~~si~~~~~P~ 820 (995)
T PTZ00419 809 --K---SESISIAKYPQ 820 (995)
T ss_pred --C---CCeeeccCCCC
Confidence 0 02566677765
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=593.16 Aligned_cols=624 Identities=21% Similarity=0.251 Sum_probs=414.7
Q ss_pred ceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHH
Q psy5309 45 FFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRL 123 (1618)
Q Consensus 45 ~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm 123 (1618)
|+++.|.||+||.+||||.+++ ++.|+.+| +++++|.|+++| |.-|-|-+-...+. +-...
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~----------~~~D~~~Ry~rm~G~~vl~~~----G~D~~Gi~~e~~ve----~~l~~ 99 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNN----------TLQDILIRYKRMQGYNTLWLP----GTDHAGIATQMVVE----RQLAA 99 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHH----------HHHHHHHHHHHhCCCcccCCC----CCCccchhhHHHHH----HHHHh
Confidence 7999999999999999999888 44444445 458889998886 77777765443332 22222
Q ss_pred cCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHH
Q psy5309 124 KGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQI 203 (1618)
Q Consensus 124 ~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~ 203 (1618)
.|.. -+-+..+...++.. +.+.+.... +.+.
T Consensus 100 ~g~~--------~~~~~re~f~~~~~----------------------------------------~w~~~~~~~-~~~~ 130 (874)
T PRK05729 100 EGKS--------RHDLGREKFLEKVW----------------------------------------EWKEESGGT-ITNQ 130 (874)
T ss_pred cCCC--------hHHCCHHHHHHHHH----------------------------------------HHHHHHHHH-HHHH
Confidence 2321 11122222222211 111111111 3466
Q ss_pred HHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc--ccCceeecCCChhhhHHHHHHHHHHHhcC-cccc----
Q psy5309 204 MQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD--WRRTFITTDSNPFFDSFVRWQFMRLRDRH-KIKY---- 276 (1618)
Q Consensus 204 ~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D--w~~~~~T~d~~p~y~~~v~~~f~~L~~kG-~iy~---- 276 (1618)
++++|++.||.|++.+..+-+.++..+++..|.+-|+.+- .-..|++.+..+.-+.-|. .+. ..| +.|.
T Consensus 131 ~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~--~~~--~~~~~~~i~f~~ 206 (874)
T PRK05729 131 LRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVE--YKE--VKGKLWHIRYPL 206 (874)
T ss_pred HHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcc--ccc--ccceEEEEEEEe
Confidence 7899999999999988888899999999999999998765 2222333332211111111 000 111 1111
Q ss_pred ---CceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCC
Q psy5309 277 ---GKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPD 353 (1618)
Q Consensus 277 ---g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~ 353 (1618)
+...+.|..+-.|-++|.=+.-. | .+... .-+.|-
T Consensus 207 ~~~~~~l~vaTtrPeTl~~~~avaV~----P-----------------------~d~ry-------~~l~g~-------- 244 (874)
T PRK05729 207 ADGSDYLVVATTRPETMLGDTAVAVN----P-----------------------EDERY-------KHLIGK-------- 244 (874)
T ss_pred cCCCcEEEEEeCCcchhhcCeeEeEC----C-----------------------CccHH-------HHhcCC--------
Confidence 12344555555555544211100 0 00000 011111
Q ss_pred CCceeecccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCC----cEEEeccccccc---cccCCCchhhhH
Q psy5309 354 MAYIALSCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERSARN---MAYQGFTEVEGK 425 (1618)
Q Consensus 354 ~~Y~~~~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~~~~---~~~~g~~~~~a~ 425 (1618)
...+|+.|+.++|+++. ++++ ||||+|+++|+|+..||..+.. .+.++++++..+ ..|+|+++++|+
T Consensus 245 ---~~~~P~~~~~ipii~~~~V~~~--~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar 319 (874)
T PRK05729 245 ---TVILPLVGREIPIIADEYVDPE--FGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEAR 319 (874)
T ss_pred ---EEECCCCCCeeeEecCccCCCC--CCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHH
Confidence 12345678899999876 6666 9999999999999999887532 234444444322 579999999999
Q ss_pred HHHhhhhccCc--------------ceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccc
Q psy5309 426 INVLLRLTGQV--------------CIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLH 491 (1618)
Q Consensus 426 ~~ii~~l~~~~--------------l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 491 (1618)
..|++.|+..+ |.|||+++++++++|||++|++++.+++.....++++++|+.+++.+.+|++|++
T Consensus 320 ~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~ 399 (874)
T PRK05729 320 KAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQ 399 (874)
T ss_pred HHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCc
Confidence 99999998765 5599999999999999999997655554433335799999999999999999999
Q ss_pred cceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCC
Q psy5309 492 EYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKC 571 (1618)
Q Consensus 492 dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~ 571 (1618)
|||||||+||||||| .|..++ .++|++...... +. + ..++. ...|+|.+ |.|+..|..+
T Consensus 400 DWcISRq~~WG~pIP---~~~~~~---~~~~v~~~~~~~--------~~--~-~~~~~---~~DvlDtW-fsS~l~~~~~ 458 (874)
T PRK05729 400 DWCISRQLWWGHRIP---AWYDED---GEVYVGREEPEA--------RE--K-ALLTQ---DEDVLDTW-FSSALWPFST 458 (874)
T ss_pred cceeeeecccCCccc---EEEeCC---CcEEeCCccccc--------cc--c-cCeEe---CCceecce-ecCCccHHHH
Confidence 999999999999999 444332 234432221100 00 0 01111 34577864 4443333222
Q ss_pred -CCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccceee
Q psy5309 572 -RVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIV 650 (1618)
Q Consensus 572 -~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (1618)
|.|.. +.+|++|||.|+++.|. .|
T Consensus 459 lgwp~~-----~~~~~~~~P~d~~~~G~-----------------------------------------Di--------- 483 (874)
T PRK05729 459 LGWPEK-----TEDLKRFYPTSVLVTGF-----------------------------------------DI--------- 483 (874)
T ss_pred hCCCCC-----cHHHHhcCCcccccccc-----------------------------------------cc---------
Confidence 45532 46789999988765554 00
Q ss_pred eeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHHHHH
Q psy5309 651 FQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKKIDI 730 (1618)
Q Consensus 651 ~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~L~~ 730 (1618)
|
T Consensus 484 -----------i-------------------------------------------------------------------- 484 (874)
T PRK05729 484 -----------I-------------------------------------------------------------------- 484 (874)
T ss_pred -----------c--------------------------------------------------------------------
Confidence 0
Q ss_pred hCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCC
Q psy5309 731 IGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGE 810 (1618)
Q Consensus 731 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~ 810 (1618)
.-|+..+
T Consensus 485 -----------------------------------------------------------------------~~W~a~~-- 491 (874)
T PRK05729 485 -----------------------------------------------------------------------FFWVARM-- 491 (874)
T ss_pred -----------------------------------------------------------------------chHHHHH--
Confidence 0011111
Q ss_pred chHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccC
Q psy5309 811 PTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 890 (1618)
Q Consensus 811 ~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~ 890 (1618)
+-
T Consensus 492 -------------------------------------------------------------------------~~----- 493 (874)
T PRK05729 492 -------------------------------------------------------------------------IM----- 493 (874)
T ss_pred -------------------------------------------------------------------------HH-----
Confidence 00
Q ss_pred CCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCC
Q psy5309 891 GENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGD 970 (1618)
Q Consensus 891 g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~ 970 (1618)
.. +. +
T Consensus 494 --------------------------------------------~~--------~~---------------------~-- 498 (874)
T PRK05729 494 --------------------------------------------MG--------LH---------------------F-- 498 (874)
T ss_pred --------------------------------------------HH--------HH---------------------h--
Confidence 00 00 0
Q ss_pred CCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEcccee-eCCccc
Q psy5309 971 EPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKM 1049 (1618)
Q Consensus 971 ~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl-~~G~KM 1049 (1618)
.+..| ++++++||+|+ .+|+||
T Consensus 499 ------------------------------------------------------~~~~P---fk~v~~hG~v~d~~G~KM 521 (874)
T PRK05729 499 ------------------------------------------------------TGQVP---FKDVYIHGLVRDEQGRKM 521 (874)
T ss_pred ------------------------------------------------------cCCCc---hhheEEeeeEECCCCCCc
Confidence 00001 48999999999 799999
Q ss_pred eeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHHHHHhcc--cCCCCCCCCc
Q psy5309 1050 SKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKEILATQS--TLRTGSQDSF 1124 (1618)
Q Consensus 1050 SKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~~l~~~~--~~~~~~~~~~ 1124 (1618)
|||+||+|+|.+++++||+|++|||+++.++.++|++|+++.+. +..+++||+.+|+...+.... ..+.......
T Consensus 522 SKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~ 601 (874)
T PRK05729 522 SKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSL 601 (874)
T ss_pred ccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCH
Confidence 99999999999999999999999999999899999999998764 467899999888876543321 1111223467
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHhccc-----CcchHHHHHHHHHHHHHhcCcCC
Q psy5309 1125 NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAE-----GGMHRTLVLRFVEVQALLLCPVC 1197 (1618)
Q Consensus 1125 ~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~k~~-----~~~~~~~l~~~l~~l~~lLaP~~ 1197 (1618)
.|+|++++++.+++++.++|++|+|+.|++.+ +.+. ++||+|++.+|++ ....+.++.++++.+++||+|||
T Consensus 602 ~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l-~~f~~~~~~~~Yle~~k~~l~~~~~~~~~~~l~~~l~~~~~lL~Pf~ 680 (874)
T PRK05729 602 ADRWILSRLNRTVAEVTEALDKYRFDEAARAL-YEFIWNEFCDWYLELAKPVLQEAAKRATRATLAYVLEQILRLLHPFM 680 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcccc
Confidence 89999999999999999999999999999994 5554 7999999999986 23456788999999999999999
Q ss_pred CCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1198 PHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1198 P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
||+|||||+.|+.... -.|++.+.||..
T Consensus 681 PfitEelw~~l~~~~~------~~si~~~~~P~~ 708 (874)
T PRK05729 681 PFITEELWQKLAPLGI------EESIMLAPWPEA 708 (874)
T ss_pred hhhHHHHHHhcccCCC------CCceeecCCCCC
Confidence 9999999999975310 124667777753
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-56 Score=588.54 Aligned_cols=653 Identities=19% Similarity=0.249 Sum_probs=434.3
Q ss_pred hhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCC
Q psy5309 11 YLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDK 89 (1618)
Q Consensus 11 ~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (1618)
.+.+ |++||++|+++++|++.++. ++++|+++.|.||+||.+||||.+++ ++.|+.+| +++++
T Consensus 62 ~~~~-E~~~~~~W~~~~~f~~~~~~-----~~~~f~i~~pPP~~tG~lHiGHa~~~----------~~~D~~~Ry~rm~G 125 (958)
T PLN02943 62 DFTS-EERIYNWWESQGYFKPNFDR-----GGDPFVIPMPPPNVTGSLHMGHAMFV----------TLEDIMVRYNRMKG 125 (958)
T ss_pred Chhh-hHHHHHHHHHCCCcccCccc-----CCCCEEEecCCCCCCCchhHHHHHHH----------HHHHHHHHHHHhcC
Confidence 4456 99999999999999987642 36789999999999999999998888 55566666 46899
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ 169 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~ 169 (1618)
|.|+++| |--|.|-+-...... ..+-.|.. .+-+..+...++...
T Consensus 126 ~~vl~~~----G~D~~Gl~~e~~vek----~l~~~~~~--------~~~~~re~f~~~~~~------------------- 170 (958)
T PLN02943 126 RPTLWIP----GTDHAGIATQLVVEK----MLASEGIK--------RTDLGRDEFTKRVWE------------------- 170 (958)
T ss_pred CeeecCC----CCCcccchhHHHHHH----HHHHcCCC--------hhhCCHHHHHHHHHH-------------------
Confidence 9999965 777888765544432 22223432 222233333322211
Q ss_pred CCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc------
Q psy5309 170 TDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD------ 243 (1618)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D------ 243 (1618)
.+...... +.+.++++|++.||-+++.+..+-+.++..+++..|.+-|+.+-
T Consensus 171 ---------------------~~~~~~~~-~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~ 228 (958)
T PLN02943 171 ---------------------WKEKYGGT-ITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVN 228 (958)
T ss_pred ---------------------HHHHHHHH-HHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceec
Confidence 11111111 24567899999999999998888899999999999999998665
Q ss_pred ccCceeecCCChhhhHHHHHHHHHHHhcCcc-ccC--------ceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEee
Q psy5309 244 WRRTFITTDSNPFFDSFVRWQFMRLRDRHKI-KYG--------KRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRL 314 (1618)
Q Consensus 244 w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~i-y~g--------~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~ 314 (1618)
|...-.|.=++ .-|. +. ...|.. |.. ...+.|..+-.|-++|.=+ .++
T Consensus 229 wcp~~~Tals~----~Eve--y~--e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~av--------------avn- 285 (958)
T PLN02943 229 WSPNLQTAVSD----LEVE--YS--EEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAI--------------AVN- 285 (958)
T ss_pred cCCCCCCCcCH----HHhh--cc--cccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEE--------------EEC-
Confidence 55444343322 1121 11 111211 111 1123344444333333111 110
Q ss_pred ccCCccccccCCCCCc-EEEEeecCccccccCceEEeCCCCCceeecccC-CccEEEEecc-cccCccCCCeeEEecCCC
Q psy5309 315 VKPYPAKLCCLDSKPV-FLVAATLRPETMYGQTNAWVRPDMAYIALSCLD-SKPVFLVAAT-LRPETMYGQTNAWVRPDM 391 (1618)
Q Consensus 315 ~~~~~~~~~~~~~~~~-~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~-~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~ 391 (1618)
..+. |- -+.| -..++|+. |++++|+++. ++++ ||||+||++|+|
T Consensus 286 ------------P~d~ry~--------~l~g-----------~~~~~Pl~~~~~ipii~~~~V~~~--~GTG~V~~~Pah 332 (958)
T PLN02943 286 ------------PEDDRYS--------KYIG-----------KMAIVPMTYGRHVPIIADRYVDKD--FGTGVLKISPGH 332 (958)
T ss_pred ------------CCCHHHH--------HHcC-----------CEEECCCcCCCeeeEEecCcccCC--CCCceEEeCCCC
Confidence 0011 10 0111 12334664 8889998875 6666 999999999999
Q ss_pred CeeEEEcCC----CcEEEeccccccccccCCCchhhhHHHHhhhhccCc--------------ceecCCEEEecccccee
Q psy5309 392 AYIAFTTAT----GEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQV--------------CIRSGDECVVALCDQWY 453 (1618)
Q Consensus 392 ~y~~~~~~~----~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~--------------l~r~g~~i~~~l~~QWf 453 (1618)
|..||+.+. ..+.++++++..+ .+.|..+++|+..|++.|+..+ |.|||+++++++++|||
T Consensus 333 d~~D~~~~~~~~L~~~~~id~~G~~~-~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWF 411 (958)
T PLN02943 333 DHNDYLLARKLGLPILNVMNKDGTLN-EVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 411 (958)
T ss_pred ChHHHHHHHHcCCCceeeeCCCceee-ccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEecccee
Confidence 999998753 2234445544332 2467779999999999998765 45999999999999999
Q ss_pred eccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeecccc
Q psy5309 454 LDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQ 533 (1618)
Q Consensus 454 l~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~ 533 (1618)
++|++++.+++.....++++++|+.+++.+.+|++|++|||||||+||||||| -|.+++.+++. +++++..+.
T Consensus 412 i~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP---~w~~~~~~~~~----~~~v~~~~~ 484 (958)
T PLN02943 412 VTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIP---VWYIVGKDCEE----DYIVARSAE 484 (958)
T ss_pred EEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccC---ceeccccCCCc----eEEecCcHH
Confidence 99997644444333234699999999999999999999999999999999999 47776655542 345543221
Q ss_pred Ccc-cccCCCCcccccc-cCCCcceeeeeeccCCCCCCCC-CCChhhHHHHHhhhccccccceeccccccCCCCchhhhH
Q psy5309 534 GGT-FRGENGNALNIKA-EDLTPEVWDYVFFKSAPFPPKC-RVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWL 610 (1618)
Q Consensus 534 ~~~-~~g~~~~~~~v~~-~~gtg~v~~~~~~~~~~~~~~~-~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~ 610 (1618)
... -.+.. ..... -.....|+|.+ |.+...|..+ |.|.. .+++|++|||.|+++.|.
T Consensus 485 ~~~~~~~~~---~g~~~~~~~~~DVlDtW-FdS~l~p~s~lgwp~~----~~~~~~~~yP~dl~~~G~------------ 544 (958)
T PLN02943 485 EALEKAREK---YGKDVEIYQDPDVLDTW-FSSALWPFSTLGWPDV----SAEDFKKFYPTTVLETGH------------ 544 (958)
T ss_pred HHHHHhhhh---cCCchheeecCceEEEE-EcCccchHHhcCCCcc----ChHHHhccCCCeEEEEee------------
Confidence 000 00000 00000 01245666664 4443333222 44431 246778888877665543
Q ss_pred hhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHH
Q psy5309 611 IESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKL 690 (1618)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~ 690 (1618)
.| |
T Consensus 545 -----------------------------Di--------------------i---------------------------- 547 (958)
T PLN02943 545 -----------------------------DI--------------------L---------------------------- 547 (958)
T ss_pred -----------------------------hH--------------------H----------------------------
Confidence 00 0
Q ss_pred HHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCc
Q psy5309 691 QEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSP 770 (1618)
Q Consensus 691 ~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g 770 (1618)
. +
T Consensus 548 ----------------------------------------~--------------------------------------f 549 (958)
T PLN02943 548 ----------------------------------------F--------------------------------------F 549 (958)
T ss_pred ----------------------------------------H--------------------------------------H
Confidence 0 0
Q ss_pred hhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeeccc
Q psy5309 771 DDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRT 850 (1618)
Q Consensus 771 ~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRq 850 (1618)
|+..+
T Consensus 550 ---------------------------------W~a~m------------------------------------------ 554 (958)
T PLN02943 550 ---------------------------------WVARM------------------------------------------ 554 (958)
T ss_pred ---------------------------------HHHHH------------------------------------------
Confidence 11110
Q ss_pred CCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhH
Q psy5309 851 YGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKL 930 (1618)
Q Consensus 851 r~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~ 930 (1618)
++.
T Consensus 555 --------------------------------~~~--------------------------------------------- 557 (958)
T PLN02943 555 --------------------------------VMM--------------------------------------------- 557 (958)
T ss_pred --------------------------------HHh---------------------------------------------
Confidence 000
Q ss_pred HHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccc
Q psy5309 931 DIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLI 1010 (1618)
Q Consensus 931 ~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~ 1010 (1618)
|.. . .
T Consensus 558 ------------------~~~----------------~-------------~---------------------------- 562 (958)
T PLN02943 558 ------------------GIE----------------F-------------T---------------------------- 562 (958)
T ss_pred ------------------hhh----------------h-------------c----------------------------
Confidence 000 0 0
Q ss_pred cccchhhhhhhhhccCCCCCCcCcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccH
Q psy5309 1011 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE 1089 (1618)
Q Consensus 1011 ~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~ 1089 (1618)
+..| ++++++||+++ .+|+|||||+||+|+|.+++++||+|++|||+++. ++++|++|++
T Consensus 563 ---------------~~~P---f~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~-~~~~d~~fs~ 623 (958)
T PLN02943 563 ---------------GTVP---FSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALG-TAGQDLNLST 623 (958)
T ss_pred ---------------CCCC---hheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhC-CCCCCccccH
Confidence 0001 47899999998 79999999999999999999999999999999986 5699999999
Q ss_pred HHHH---HHHhhHHHHHHHHHHHHHhcc-----------cCCC---CCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHH
Q psy5309 1090 SMAD---AGILRLYTFIEWVKEILATQS-----------TLRT---GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1152 (1618)
Q Consensus 1090 ~~~~---~~~~kl~N~~~~l~~~l~~~~-----------~~~~---~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~a 1152 (1618)
+.+. ..+++|+|+.+|+++.+.... .+.. .......|+|++++++.+++++.++|++|+|+.|
T Consensus 624 ~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A 703 (958)
T PLN02943 624 ERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDV 703 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHH
Confidence 8764 467899999999987653210 0110 1134578999999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHHHHhccc----Cc-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhh
Q psy5309 1153 LRTGFFEL--QAARDKYRELTAAE----GG-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFI 1221 (1618)
Q Consensus 1153 l~~~~~~l--~~~~n~Yi~~~k~~----~~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~ 1221 (1618)
++.+ +.+ .++||+|++.+|+. .. ..+.++..+++.+++||+|||||+|||||+.|+.+..
T Consensus 704 ~~~i-~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~~~-------- 774 (958)
T PLN02943 704 GREI-YDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYRKE-------- 774 (958)
T ss_pred HHHH-HHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCCCC--------
Confidence 9985 454 58999999999873 11 3456788999999999999999999999999975432
Q ss_pred hhhhcccCC
Q psy5309 1222 YIHTAIWGD 1230 (1618)
Q Consensus 1222 s~~~~~~p~ 1230 (1618)
+++.+.||.
T Consensus 775 si~~~~wP~ 783 (958)
T PLN02943 775 ALIVSPWPQ 783 (958)
T ss_pred ceeecCCCC
Confidence 455666664
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-56 Score=588.42 Aligned_cols=178 Identities=20% Similarity=0.266 Sum_probs=148.6
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcc-cccccccHHHHH----HHHhhHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS-VEDANFVESMAD----AGILRLYTFIEWV 1106 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~-~~D~~fs~~~~~----~~~~kl~N~~~~l 1106 (1618)
+++|++||||+ .+|+|||||+||+|+|.+++++||||++||||++++.. ++|++|+++.+. ..++++||..+|+
T Consensus 704 fK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~ 783 (1205)
T PTZ00427 704 FKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFF 783 (1205)
T ss_pred cceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999 69999999999999999999999999999999987664 799999988764 3567889999998
Q ss_pred HHHHHhcc-----cCC-C----CCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhccc--
Q psy5309 1107 KEILATQS-----TLR-T----GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAE-- 1174 (1618)
Q Consensus 1107 ~~~l~~~~-----~~~-~----~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~-- 1174 (1618)
...+.... .+. . .......|+|++++++.+++++.++|++|+|+.|++.++.++.+++|+|++.+|+.
T Consensus 784 ~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~ 863 (1205)
T PTZ00427 784 SQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMR 863 (1205)
T ss_pred HhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhc
Confidence 87554211 110 0 12345679999999999999999999999999999996555556999999988751
Q ss_pred -C------cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCC
Q psy5309 1175 -G------GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK 1210 (1618)
Q Consensus 1175 -~------~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgk 1210 (1618)
. .....+|+++|+.+++||+|||||+||+||+.|+.
T Consensus 864 ~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 864 GSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 1 13456789999999999999999999999999963
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=593.15 Aligned_cols=191 Identities=23% Similarity=0.266 Sum_probs=154.9
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHH-H---HHHHhhHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESM-A---DAGILRLYTFIEWVK 1107 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~-~---~~~~~kl~N~~~~l~ 1107 (1618)
|+++++||+++ .+|+|||||+||+|+|.+++++||+|++|||++++++.++|++|+++. + ++.+++++|+++|+.
T Consensus 576 fk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~ 655 (975)
T PRK06039 576 YKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFV 655 (975)
T ss_pred ccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999 699999999999999999999999999999999998889999999988 3 346789999999986
Q ss_pred HHHHhcc--cC---CCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHhcc--cC----
Q psy5309 1108 EILATQS--TL---RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ-AARDKYRELTAA--EG---- 1175 (1618)
Q Consensus 1108 ~~l~~~~--~~---~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~-~~~n~Yi~~~k~--~~---- 1175 (1618)
.+.+..+ .. .........|+|++++++.+++++.++|++|+|+.|++.+ +.+. .++|+|++.+++ +.
T Consensus 656 ~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l-~~f~~~lsn~Yi~~~k~r~w~~~~~ 734 (975)
T PRK06039 656 LYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAI-RDFVDDLSNWYIRRSRRRFWKEEDD 734 (975)
T ss_pred HHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHHHHHHHHHHhhhhhccCCCc
Confidence 5443111 00 1112345789999999999999999999999999999995 4554 567999998865 21
Q ss_pred ---cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCC
Q psy5309 1176 ---GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGD 1230 (1618)
Q Consensus 1176 ---~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~ 1230 (1618)
.....+|.++++.+++||+|||||+||+||+.|+.... -.|+|.+.||.
T Consensus 735 ~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~~------~~sv~~~~~P~ 786 (975)
T PRK06039 735 PDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDA------PESVHLADWPE 786 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCC------CCeeEecCCCC
Confidence 12346788999999999999999999999999984100 12566777765
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=585.48 Aligned_cols=190 Identities=24% Similarity=0.282 Sum_probs=158.1
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~ 1108 (1618)
++++++||+++ .+|+|||||+||+|+|.+++++||+|++|||+++.++.++|++|+++.+.. .+++|||..+|+..
T Consensus 509 fk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~ 588 (861)
T TIGR00422 509 FKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLM 588 (861)
T ss_pred hheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999 699999999999999999999999999999999998889999999988654 57899998888876
Q ss_pred HHHhcccCCC-CCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHHHHHHHHhcccC--------cc
Q psy5309 1109 ILATQSTLRT-GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFEL--QAARDKYRELTAAEG--------GM 1177 (1618)
Q Consensus 1109 ~l~~~~~~~~-~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l--~~~~n~Yi~~~k~~~--------~~ 1177 (1618)
........+. .......|+|++++++.+++++.++|++|+|+.|++.+ +++ .++||+|++.++++. ..
T Consensus 589 ~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l-~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~ 667 (861)
T TIGR00422 589 NLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKAL-YEFIWNDFCDWYIELVKYRLYNGNEAEKKA 667 (861)
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHHHHHHHHHHHhHHHHcCCCcHHHHH
Confidence 5543221211 12346789999999999999999999999999999984 555 489999999998741 13
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1178 HRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1178 ~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
...++.++++.+++||+|||||+||+||+.|+.+.. |+|.+.||..
T Consensus 668 ~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~~~--------si~~~~~P~~ 713 (861)
T TIGR00422 668 ARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEGAD--------SIMLQSYPVV 713 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcccCC--------ceeecCCCCc
Confidence 456789999999999999999999999999985432 4566777653
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-56 Score=589.59 Aligned_cols=393 Identities=14% Similarity=0.201 Sum_probs=250.3
Q ss_pred hhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCC
Q psy5309 9 VEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPD 87 (1618)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 87 (1618)
.-.+.++|++||++|+++++|++..+ .++++|+++.|+||+||.+||||.+++ ++.|+.+| .++
T Consensus 99 ~yd~~~iE~~w~~~W~~~~~f~~~~~-----~~~~~f~i~~ppPy~nG~lHiGHa~~~----------ti~Dii~Ry~rm 163 (1066)
T PLN02381 99 QYSPSAVEKSWYAWWEKSGYFGADAK-----SSKPPFVIVLPPPNVTGALHIGHALTA----------AIEDTIIRWKRM 163 (1066)
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCcc-----CCCCcEEEEeCCCCCCCCccHHHHHHH----------HHHHHHHHHHHh
Confidence 34567899999999999999988653 247899999999999999999999888 55555555 458
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
.+|.|.+||.+ =|-|-+-.... .+..|.. -|.+-+-++.+...++...
T Consensus 164 ~G~~vl~~~G~----D~~Glp~e~~v-------ek~l~~~----~~~~~~~~~re~f~~~~~~----------------- 211 (1066)
T PLN02381 164 SGYNALWVPGV----DHAGIATQVVV-------EKKLMRE----RHLTRHDIGREEFVSEVWK----------------- 211 (1066)
T ss_pred CCCcccccCCC----CCCcChHHHHH-------HHHhHhh----cCCChhhCCHHHHHHHHHH-----------------
Confidence 89999999855 23333322221 1111110 1222233344433332211
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc----
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD---- 243 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D---- 243 (1618)
.+...... +.+.++++|.+.||-+++.+..+-+.++..+++.+|.+-|+.+-
T Consensus 212 -----------------------~~~~~~~~-~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~ 267 (1066)
T PLN02381 212 -----------------------WKDEYGGT-ILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRL 267 (1066)
T ss_pred -----------------------HHHHHHHH-HHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEecccc
Confidence 11111111 34567899999999999998888899999999999999998665
Q ss_pred --ccCceeecCCChhhhHHHHHHHHHHHhcCcccc------CceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeec
Q psy5309 244 --WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY------GKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLV 315 (1618)
Q Consensus 244 --w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~------g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~ 315 (1618)
|...-.|.-++ .-|. .... ....+|. ......|-| +.|.-..+ ..+ +.+.
T Consensus 268 VnWcP~~~TaLSd----~EVe--y~d~-~~~s~~~~~~~~~~~~~g~~~~----------~~Y~l~~~-~~~----i~vA 325 (1066)
T PLN02381 268 VNWDCTLRTAISD----VEVD--YIDI-KERTLLKVPGYDKPVEFGVLTS----------FAYPLEGG-LGE----IVVA 325 (1066)
T ss_pred ccCCCCCCCCccH----HHhh--hhcc-ccchhhcccCCCcceeeEEEEE----------EEEEecCC-CCE----EEEe
Confidence 65544444322 1121 1110 0011110 000011211 00000000 001 1110
Q ss_pred cCCccccccCCCCCcEEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEec--ccccCccCCCeeEEecCCCC
Q psy5309 316 KPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAA--TLRPETMYGQTNAWVRPDMA 392 (1618)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~--~~~~~t~~Gt~~v~v~P~~~ 392 (1618)
..-|.- .+ +++.+. -.|+.--. -+. .-...+|+.++.++||++ .++++ ||||+|+++|+|+
T Consensus 326 TtRpEt--i~--g~~ava---V~P~d~ry-------~~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e--~GTG~V~i~PaHd 389 (1066)
T PLN02381 326 TTRIET--ML--GDTAIA---IHPDDERY-------KHLHGKFAVHPFNGRKLPIICDAILVDPN--FGTGAVKITPAHD 389 (1066)
T ss_pred cCCHHH--Hh--ccccee---eCCCCcch-------hhhCCCEEECCCCCCEEEEEECCcccccc--CCCCcEEecCCCC
Confidence 000100 00 111121 22221110 011 122345778889999985 47766 9999999999999
Q ss_pred eeEEEcCC----CcEEEeccccccc---c-ccCCCchhhhHHHHhhhhccCc--------------ceecCCEEEecccc
Q psy5309 393 YIAFTTAT----GEVFVCTERSARN---M-AYQGFTEVEGKINVLLRLTGQV--------------CIRSGDECVVALCD 450 (1618)
Q Consensus 393 y~~~~~~~----~~~~i~~~~~~~~---~-~~~g~~~~~a~~~ii~~l~~~~--------------l~r~g~~i~~~l~~ 450 (1618)
..||+.+. ..+.++++++..+ . .|.|+.+++|+..|++.|+..+ |.|||+++++++++
T Consensus 390 ~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~ 469 (1066)
T PLN02381 390 PNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKP 469 (1066)
T ss_pred hHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecc
Confidence 99998763 2344555555432 2 6999999999999999998764 55999999999999
Q ss_pred ceeeccCCchHHHHHHH---HhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchh
Q psy5309 451 QWYLDYGEPTWKAAAEQ---CLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLI 513 (1618)
Q Consensus 451 QWfl~~~~~~~k~~~~~---~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i 513 (1618)
||||+|++++.+++... ..++++++|+.+++++.+|++|++||||||||||||||| .|..
T Consensus 470 QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIP---iw~~ 532 (1066)
T PLN02381 470 QWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIP---AWYV 532 (1066)
T ss_pred cceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccc---eEEe
Confidence 99999998875555433 338999999999999999999999999999999999999 5554
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-56 Score=586.01 Aligned_cols=188 Identities=18% Similarity=0.231 Sum_probs=156.3
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~ 1108 (1618)
|++|++|||++ .+|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+.. .+++|+|+.+|+++
T Consensus 576 ~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~ 654 (912)
T PRK05743 576 YKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQVAEAYRRIRNTLRFLLG 654 (912)
T ss_pred cceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999 6999999999999999999999999999999997 6899999999988654 57899999999987
Q ss_pred HHHhcccCC---CCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHhccc------C--
Q psy5309 1109 ILATQSTLR---TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAE------G-- 1175 (1618)
Q Consensus 1109 ~l~~~~~~~---~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~k~~------~-- 1175 (1618)
++....... +.......|+|++++++.+++++.++|++|+|++|++.+ +.+. +++|+|++..|++ .
T Consensus 655 nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l-~~f~~~~ls~~Yie~~K~rly~~~~~~~ 733 (912)
T PRK05743 655 NLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKL-HNFCSVDLSAFYLDIIKDRLYTDAADSL 733 (912)
T ss_pred CccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHhhhhhceeeheeccHhhhcCCCCcH
Confidence 765422100 112346689999999999999999999999999999995 4554 6889999998872 1
Q ss_pred --cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCC-CccccccchhhhhhhcccCC
Q psy5309 1176 --GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK-DLIQNHLTFFIYIHTAIWGD 1230 (1618)
Q Consensus 1176 --~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgk-d~~svh~~~f~s~~~~~~p~ 1230 (1618)
...++++..+++.++++|+|||||+|||+|+.|+. ... |+|.+.||.
T Consensus 734 ~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~~~~--------sv~~~~wP~ 783 (912)
T PRK05743 734 ARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGEREE--------SVFLEEWPE 783 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccCCCC--------ceEEecCCC
Confidence 12456789999999999999999999999999962 222 456666664
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-55 Score=582.02 Aligned_cols=405 Identities=14% Similarity=0.163 Sum_probs=254.1
Q ss_pred hHHHHHHHHHH--hHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCC
Q psy5309 12 LQKIEKEVQEE--WDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDD 88 (1618)
Q Consensus 12 ~~~~E~~~~~~--W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 88 (1618)
-.++-+.|++. .+. ..+....+ ++|++..|.||+||.+|+||.+++ ++.|+.+| ++++
T Consensus 14 E~~~~~~W~e~~~f~~--~~~~~~~~-------~~f~~~dgPPyanG~~HiGH~~~~----------~ikDii~Ry~rm~ 74 (1159)
T PLN02882 14 EEKILSLWSEIDAFKT--QLKRTEGL-------PEYIFYDGPPFATGLPHYGHILAG----------TIKDIVTRYQSMT 74 (1159)
T ss_pred HHHHHHHHHhCCCccc--cccccCCC-------CCEEEeCCCCCCCCcchhhHHHHH----------HHHHHHHHHHHcC
Confidence 35667778653 322 22333344 469999999999999999998887 56666666 5689
Q ss_pred CeEEeCCCCC-CCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 89 ~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
+|.|.++|.+ -.|.+ +=+. ..+..|.+. .. .|+ + +|+.
T Consensus 75 G~~V~~~~GwD~hGlP-iE~~-----------vek~lgi~~--------~~-~i~----~-------~g~~--------- 113 (1159)
T PLN02882 75 GHHVTRRFGWDCHGLP-VEYE-----------IDKKLGIKR--------RD-DVL----K-------MGID--------- 113 (1159)
T ss_pred CCcccccCccCCCCcH-HHHH-----------HHHHcCCCC--------cc-chh----h-------cCHH---------
Confidence 9999999977 55544 1111 112222211 00 111 0 1110
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHH---HHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc-
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKY---QWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD- 243 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~---~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D- 243 (1618)
...+.|+..+.++ +.+.++++|...|+-+.+.+..+-+.++..+++.+|.+-|+.+-
T Consensus 114 -------------------~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~ 174 (1159)
T PLN02882 114 -------------------KYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKG 174 (1159)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 1123355555544 34667889999999888888888889999999999999998665
Q ss_pred -----ccCceeecCCChhhhHHHHHHHHHHHhcCccccC---------ceeEEEecCCCCcccchhhccCCCCCCeeEEE
Q psy5309 244 -----WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG---------KRYTVFSPRDNQPCMDHDRASGEGVGPQEYTL 309 (1618)
Q Consensus 244 -----w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g---------~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~ 309 (1618)
|...-.|--+| ++..+ -++. ...-.+|.. ...+.|..+-.|-.|+.=+.-+... .|+.
T Consensus 175 ~~~v~wcp~~~TaLs~--~E~~~--~Yk~-~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~---~Y~~ 246 (1159)
T PLN02882 175 FKVMPYSTACKTPLSN--FEAGL--NYKD-VSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNF---TYVK 246 (1159)
T ss_pred ceeEeecCCCCCCcch--hhhhh--hccc-CCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCC---cEEE
Confidence 44333333222 22100 0110 001112211 3466788888888877555433221 3444
Q ss_pred EEEe-------ec-cCCccccccC----------CCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEe
Q psy5309 310 IKMR-------LV-KPYPAKLCCL----------DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVA 371 (1618)
Q Consensus 310 ~~~~-------~~-~~~~~~~~~~----------~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~ 371 (1618)
+... +. ..+....... .....+-++.|-...-|.|-.+ .+|-..+... .++.++|++
T Consensus 247 v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y--~p~~~~~~~~---~~~~~~Vi~ 321 (1159)
T PLN02882 247 VRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKY--EPLFDYFSEF---SDTAFRVVA 321 (1159)
T ss_pred EEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEE--ECCccccccc---cCceEEEEc
Confidence 4321 00 0000000000 0001234445555555555554 3432111110 245677777
Q ss_pred cc-cccCccCCCeeEEecCCCCeeEEEcCC--Cc-------EEEecccccc---ccccCCCchhhhHHHHhhhhccCc--
Q psy5309 372 AT-LRPETMYGQTNAWVRPDMAYIAFTTAT--GE-------VFVCTERSAR---NMAYQGFTEVEGKINVLLRLTGQV-- 436 (1618)
Q Consensus 372 ~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~--~~-------~~i~~~~~~~---~~~~~g~~~~~a~~~ii~~l~~~~-- 436 (1618)
++ |+++ +|||+||++|+|+..||..+. |- +...++++.. ...|+|+.+++|+..|++.|+..+
T Consensus 322 ~~~V~~~--~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L 399 (1159)
T PLN02882 322 DDYVTDD--SGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRL 399 (1159)
T ss_pred cCccCCC--CCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCc
Confidence 65 7776 999999999999988887642 11 2222333321 246899999999999999998764
Q ss_pred ------------ceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhh-hhhHhhhhhccccceeeccccCCc
Q psy5309 437 ------------CIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEV-RRNFGASLNWLHEYACSRTYGLGT 503 (1618)
Q Consensus 437 ------------l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~-~~~~~~~~~~l~dWciSRq~~WG~ 503 (1618)
|.|||+++++++++|||++++++ |..+.+.+++++++|+.. .++|.+|++|++||||||||||||
T Consensus 400 ~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~--k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGt 477 (1159)
T PLN02882 400 VKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEI--KDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGT 477 (1159)
T ss_pred cceeeeecCCCEeeCCCCEEEEEecceeEEEcHHH--HHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCC
Confidence 66999999999999999999854 666667889999999999 479999999999999999999999
Q ss_pred cCCCCCcchhhc
Q psy5309 504 KLPWDEQWLIES 515 (1618)
Q Consensus 504 ~iP~~~~w~i~~ 515 (1618)
||| .|..++
T Consensus 478 PIP---vw~~~~ 486 (1159)
T PLN02882 478 PLP---IWISDD 486 (1159)
T ss_pred ccc---eEEeCC
Confidence 999 666544
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-55 Score=579.61 Aligned_cols=177 Identities=20% Similarity=0.213 Sum_probs=151.3
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHh---------hcCccceEEeecccCcccccccccHHHHH---HHHhhH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVK---------KFSADGMRLCLADSGDSVEDANFVESMAD---AGILRL 1099 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~---------~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl 1099 (1618)
|+++++|||++ .+|+|||||+||+|+|.++++ +||+|++|||+++. ++++|++|+++.++ ..+++|
T Consensus 595 fk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~-~~~~d~~~s~~~l~~~~~~~~kl 673 (974)
T PLN02843 595 YKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASV-DYTGDVLIGPQILKQMSDIYRKL 673 (974)
T ss_pred cceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHhc-ccCCCceeCHHHHHHHHHHHHHH
Confidence 79999999999 689999999999999999999 79999999999965 78999999998765 577899
Q ss_pred HHHHHHHHHHHHhcccCC--CCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHHHHHHHHhcccC-
Q psy5309 1100 YTFIEWVKEILATQSTLR--TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGF-FELQAARDKYRELTAAEG- 1175 (1618)
Q Consensus 1100 ~N~~~~l~~~l~~~~~~~--~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~-~~l~~~~n~Yi~~~k~~~- 1175 (1618)
+|.++|+++++....... +.......|+|++++++.+++++.++|++|+|++|++.++ |.+.+++|+|++..||+.
T Consensus 674 ~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly 753 (974)
T PLN02843 674 RGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLY 753 (974)
T ss_pred HHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhh
Confidence 999999988776532100 1123456799999999999999999999999999999954 344789999999999831
Q ss_pred ---------cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCC
Q psy5309 1176 ---------GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK 1210 (1618)
Q Consensus 1176 ---------~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgk 1210 (1618)
...+++|..+++.++++|+|||||+|||||+.|+.
T Consensus 754 ~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~ 797 (974)
T PLN02843 754 VGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPF 797 (974)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccc
Confidence 12456789999999999999999999999999974
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-55 Score=576.44 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=156.9
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~ 1108 (1618)
|++|++|||++ .+|+|||||+||+|+|.+++++||+|++|||++++ ++++|++|+++.+. ..+++|+|+++|+++
T Consensus 614 ~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~-~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~ 692 (961)
T PRK13804 614 YKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASV-DYSDDQRIGKEILKQVSETYRKLRNTLRWLLG 692 (961)
T ss_pred hhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhC-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999 69999999999999999999999999999999974 89999999998754 467899999999988
Q ss_pred HHHhcccC---CCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHhccc------C--
Q psy5309 1109 ILATQSTL---RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAE------G-- 1175 (1618)
Q Consensus 1109 ~l~~~~~~---~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~k~~------~-- 1175 (1618)
++.++... .........|+|++++++.+++++.++|++|+|++|++.+ +.+. +++|+|++..|++ .
T Consensus 693 nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l-~~f~~~~lsn~Yle~~K~rl~~~~~~~~ 771 (961)
T PRK13804 693 NLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKAL-VNFVNVDLSAFYFDIRKDALYCDAPSSL 771 (961)
T ss_pred ccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHHHHhhHhhhcCCCCcH
Confidence 77653211 0122345679999999999999999999999999999995 5554 5799999998872 1
Q ss_pred --cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCC-CccccccchhhhhhhcccCC
Q psy5309 1176 --GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK-DLIQNHLTFFIYIHTAIWGD 1230 (1618)
Q Consensus 1176 --~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgk-d~~svh~~~f~s~~~~~~p~ 1230 (1618)
...++++..+++.+++||+|||||+|||+|+.||. ... |+|.+.||.
T Consensus 772 ~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~~~~--------sv~l~~wP~ 821 (961)
T PRK13804 772 RRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPEEEV--------SVHLEQFPE 821 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccCCCC--------ceEecCCCC
Confidence 23567889999999999999999999999999984 112 456666664
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-54 Score=572.42 Aligned_cols=190 Identities=23% Similarity=0.274 Sum_probs=152.5
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH----HHhhHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA----GILRLYTFIEWVK 1107 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~----~~~kl~N~~~~l~ 1107 (1618)
|+++++|||++ .+|+|||||+||+|+|.+++++||+|++|||++++ ++++|++|+++.++. ..++++|+++|+.
T Consensus 595 ~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~ 673 (861)
T TIGR00392 595 YKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKIRWNTYRFLL 673 (861)
T ss_pred hHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999 69999999999999999999999999999999999 999999999998754 3456777788876
Q ss_pred --HHHHhccc---CCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHhcc--cC---
Q psy5309 1108 --EILATQST---LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAA--EG--- 1175 (1618)
Q Consensus 1108 --~~l~~~~~---~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~k~--~~--- 1175 (1618)
+.+.+... ..........|+|++++++.+++++.++|++|+|+.|++.+ +.+. +++|+|++.+++ +.
T Consensus 674 ~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l-~~f~~~~l~n~Yi~~~k~~lw~~~~ 752 (861)
T TIGR00392 674 TYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRAL-QDFIVEELSNWYIRIIRDRLYCEAK 752 (861)
T ss_pred HHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHHhhHHhccCCC
Confidence 44433210 00112345679999999999999999999999999999994 5443 379999999876 21
Q ss_pred ----cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCC
Q psy5309 1176 ----GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGD 1230 (1618)
Q Consensus 1176 ----~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~ 1230 (1618)
+..+.++..+++.+++||+|||||+||+||+.|+.... -.|+|.+.||.
T Consensus 753 ~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~~------~~si~~~~wP~ 805 (861)
T TIGR00392 753 DNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEE------EESVHLNLWPE 805 (861)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccCC------CCceeccCCCC
Confidence 12456788999999999999999999999999975310 02456677764
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=561.12 Aligned_cols=185 Identities=24% Similarity=0.300 Sum_probs=151.8
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~ 1108 (1618)
++++++||+++ .+|+|||||+||+|+|.+++++||+|++|||++ .+++++|++|+++.+. ..+++++|+.+++..
T Consensus 517 f~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~ 595 (800)
T PRK13208 517 WKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH 595 (800)
T ss_pred cceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHh-cCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999 699999999999999999999999999999999 7799999999998764 466799999888763
Q ss_pred HHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHhccc---C------cc
Q psy5309 1109 ILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAE---G------GM 1177 (1618)
Q Consensus 1109 ~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~k~~---~------~~ 1177 (1618)
... .............|+|++++++.+++++.++|++|+|+.|++.+ +.+. +.+|+|++..|++ . ..
T Consensus 596 ~~~-~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i-~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~ 673 (800)
T PRK13208 596 FSA-DPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEI-ESFFWHVFCDDYLELVKSRAYGEDEEEEQKS 673 (800)
T ss_pred ccc-ccccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHhhHHHHHHhhHHhcCCCCcHHHHH
Confidence 321 11111122345689999999999999999999999999999995 5554 3899999998873 1 12
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCC
Q psy5309 1178 HRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGD 1230 (1618)
Q Consensus 1178 ~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~ 1230 (1618)
...++.++++.+++||+|||||+|||||+.|| + . +++.+.||.
T Consensus 674 ~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~-~--------si~~~~wP~ 716 (800)
T PRK13208 674 ARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-G-G--------SVHRASWPE 716 (800)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-C-C--------ceEeccCCC
Confidence 44678999999999999999999999999998 2 1 456667765
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=565.07 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=158.0
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~ 1108 (1618)
|++|++||||+ .+|+|||||+||+|+|.+++++||+|++||||++.++.++|++|+++.++ ++++++||+.++++.
T Consensus 522 fk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~ 601 (1052)
T PRK14900 522 FRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALM 601 (1052)
T ss_pred cceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999 59999999999999999999999999999999999899999999998764 467899998777765
Q ss_pred HHHhcc--c-CCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHHHHHHHHhccc--C-c----
Q psy5309 1109 ILATQS--T-LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFEL--QAARDKYRELTAAE--G-G---- 1176 (1618)
Q Consensus 1109 ~l~~~~--~-~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l--~~~~n~Yi~~~k~~--~-~---- 1176 (1618)
.+..+. . .+........|+|++++++.++.++.++|++|+|+.|++.+ +.+ .++||+|++..++. . .
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i-~~f~~~~~~n~Yie~~k~~l~~~~~~~~ 680 (1052)
T PRK14900 602 NLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAV-YAFVWHELCDWYIELAKEALASEDPEAR 680 (1052)
T ss_pred hhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHhhhHHHHHhccHhhccCCHHHH
Confidence 554321 1 11112345689999999999999999999999999999994 544 47999999998873 1 1
Q ss_pred -chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1177 -MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1177 -~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
....++.++|+.+++||+|||||+||+||+.|+..... .++-.|+|.+.||..
T Consensus 681 ~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~--~~~~~SV~~~~wP~~ 734 (1052)
T PRK14900 681 RSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGA--SAWADSVLAAEYPRK 734 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcccccc--CCCCCceeecCCCCC
Confidence 24567889999999999999999999999999752100 011235777888753
|
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=529.41 Aligned_cols=192 Identities=23% Similarity=0.334 Sum_probs=164.5
Q ss_pred hccCCCCCCcCcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhh
Q psy5309 1023 AIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILR 1098 (1618)
Q Consensus 1023 ~~~p~~~~~~pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~k 1098 (1618)
+.++.+| ++++++|||++ .+|+|||||+||+|+|.+++++||||+||||++++ +++.|+.||++.++ ..+++
T Consensus 579 a~~~~aP---Yk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ss-d~~~dl~~s~~il~~~~~~~r~ 654 (933)
T COG0060 579 ALFGRAP---YKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASS-DYWEDLRFSDEILKQVREVYRK 654 (933)
T ss_pred HHcCCch---HHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeec-CchhccccCHHHHHHHHHHHHH
Confidence 3345445 89999999999 89999999999999999999999999999999988 59999999998754 57899
Q ss_pred HHHHHHHHHHHHHhcccCC---CCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHHHHHHHHHhccc
Q psy5309 1099 LYTFIEWVKEILATQSTLR---TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFEL-QAARDKYRELTAAE 1174 (1618)
Q Consensus 1099 l~N~~~~l~~~l~~~~~~~---~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l-~~~~n~Yi~~~k~~ 1174 (1618)
|||+++|++.++++++... ....+..+|+|++++++.+++++.++|++|+|+++++.+..++ .+++|+|++..|+.
T Consensus 655 irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr 734 (933)
T COG0060 655 IRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDR 734 (933)
T ss_pred HHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999988764322 1224677899999999999999999999999999999966555 57889999999861
Q ss_pred ----------CcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC--ccccccc
Q psy5309 1175 ----------GGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD--LIQNHLT 1218 (1618)
Q Consensus 1175 ----------~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd--~~svh~~ 1218 (1618)
.++++++|++++..++++||||+||+||++|+.+..+ ..|+|+.
T Consensus 735 ~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~ 790 (933)
T COG0060 735 LYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLE 790 (933)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCCCCceeEec
Confidence 2467889999999999999999999999999999665 4454433
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=500.43 Aligned_cols=143 Identities=22% Similarity=0.410 Sum_probs=121.2
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+|+.|||||||+|||||+++.+++|+++||+||+|++|.+++|+||||+|||..|++. +|+++.
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~------lg~~~~------- 67 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKE------LGISGK------- 67 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHH------hCCCCC-------
Confidence 4699999999999999999999999999999999999999999999999999999988762 233210
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
..+ .+.+.+++.+- |.++++++.+.++++|++||++.||++.
T Consensus 68 ------------------~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lgi~~~~~~~ 109 (338)
T cd00818 68 ------------------KDI------------------EKMGIAEFNAK--CREFALRYVDEQEEQFQRLGVWVDWENP 109 (338)
T ss_pred ------------------cch------------------hhcCHHHHHHH--HHHHHHHHHHHHHHHHHHhCceecCCCC
Confidence 000 01223333333 5789999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEE
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVF 283 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w 283 (1618)
+.|++ |.|.+.++++|.+|+++|+||++.++|+|
T Consensus 110 ~~T~~--~~~~~~v~~~f~~L~~~G~iY~~~~~v~~ 143 (338)
T cd00818 110 YKTMD--PEYMESVWWVFKQLHEKGLLYRGYKVVPW 143 (338)
T ss_pred eECCC--HHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence 99999 78999999999999999999998877777
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0436|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=445.63 Aligned_cols=279 Identities=22% Similarity=0.300 Sum_probs=222.4
Q ss_pred cChHHHHHHHHhhc-CcCceeecc---cCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcC
Q psy5309 827 YHDEVRRNFGASLN-WLHEYACSR---TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAE 902 (1618)
Q Consensus 827 ~P~~~k~~~~~~l~-~l~DW~ISR---qr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~ 902 (1618)
.|+..+++..+||+ +++|.+||| ...||+|+|.|++ +|||||++++.+|++. -|.
T Consensus 225 qPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~dds--------QtIYVWfDAL~nYiSv---ig~---------- 283 (578)
T KOG0436|consen 225 QPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDS--------QTIYVWFDALLNYISV---IGY---------- 283 (578)
T ss_pred CchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCc--------ceEEEeHHHHhhHHHh---hcC----------
Confidence 35666678888884 899999999 4699999999765 7999999999999962 010
Q ss_pred CCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCC
Q psy5309 903 DLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN 982 (1618)
Q Consensus 903 ~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~ 982 (1618)
++. + .+ .+..+..|||+.++++|||++++|..| ||+.|.+.
T Consensus 284 ---------------~~~-~-----~N---~k~~ls~~wPat~HvIGKDIlrFHavY---------------WPafLmaA 324 (578)
T KOG0436|consen 284 ---------------PNK-Q-----QN---LKTALSFGWPATLHVIGKDILRFHAVY---------------WPAFLMAA 324 (578)
T ss_pred ---------------Cch-h-----cc---ccceeecCCCceeeehhhhhhhhhhhh---------------hHHHHHhc
Confidence 010 0 01 134567899999999999999999877 56654222
Q ss_pred CccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHH
Q psy5309 983 GHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEA 1062 (1618)
Q Consensus 983 g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~ei 1062 (1618)
+.++|+.|++|||++.+|.|||||+||+|+|.++
T Consensus 325 ----------------------------------------------GlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l 358 (578)
T KOG0436|consen 325 ----------------------------------------------GLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFEL 358 (578)
T ss_pred ----------------------------------------------CCCCccEEEEeeeeeecceecchhhccccCHHHH
Confidence 2446999999999999999999999999999999
Q ss_pred HhhcCccceEEeecccCcccccccccHHHHH-----HHHhhHHHHHHHHHH--HHHhc--ccC-CCCCCCCcchHHHHHH
Q psy5309 1063 VKKFSADGMRLCLADSGDSVEDANFVESMAD-----AGILRLYTFIEWVKE--ILATQ--STL-RTGSQDSFNDKVFLSE 1132 (1618)
Q Consensus 1063 i~~yGaDalRl~l~~~~~~~~D~~fs~~~~~-----~~~~kl~N~~~~l~~--~l~~~--~~~-~~~~~~~~~D~~~l~~ 1132 (1618)
+++||+|++||||++.+.++.|.+|+++.+. ...++++|+++|+.+ +...+ ... -..+.....+.-+.+.
T Consensus 359 ~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~ 438 (578)
T KOG0436|consen 359 VQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDT 438 (578)
T ss_pred HHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHH
Confidence 9999999999999999999999999998753 345789999999987 21111 000 0111223345568889
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCc------------chHHHHHHHHHHHHHhcCcCCCCc
Q psy5309 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGG------------MHRTLVLRFVEVQALLLCPVCPHV 1200 (1618)
Q Consensus 1133 l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~------------~~~~~l~~~l~~l~~lLaP~~P~~ 1200 (1618)
++++.+.+.+.|+++.+.+|+++ +..+.+..|.|++..+|+.. ....+++++++++.++|+|++|.+
T Consensus 439 v~kl~ev~a~~~d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psl 517 (578)
T KOG0436|consen 439 VEKLPEVAATNYDNFSLYSALEA-VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSL 517 (578)
T ss_pred HHHhHHHHHhhcccccHHHHHHH-HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchh
Confidence 99999999999999999999998 68999999999999998531 123456889999999999999999
Q ss_pred hhHHHHHhCCCc
Q psy5309 1201 AEHVYQLLGKDL 1212 (1618)
Q Consensus 1201 aEei~~~Lgkd~ 1212 (1618)
+.+++..||-..
T Consensus 518 s~~llsqlgvsk 529 (578)
T KOG0436|consen 518 SLRLLSQLGVSK 529 (578)
T ss_pred HHHHHHHcCCCh
Confidence 999999998653
|
|
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=444.04 Aligned_cols=203 Identities=24% Similarity=0.343 Sum_probs=145.8
Q ss_pred EEeccCcceeecCCchHHHHHHHHHhccc-ccChHHHHHHHHhhc-CcCceeecccCCCCcccCCCccccccccCCcceE
Q psy5309 797 VVALCDQWYLDYGEPTWKAAAEQCLANMN-TYHDEVRRNFGASLN-WLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 797 ~~~~~~QWfi~~~~~~~k~~~~~~i~~v~-~~P~~~k~~~~~~l~-~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
|.+-+++||+++ +.+++.+.+.+++-. +.|+..++.+.+||+ +++||||||...||+|+|.|+ ++++|
T Consensus 177 ~~r~e~~~ff~L--~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~~--------~~~iy 246 (391)
T PF09334_consen 177 EVREEENYFFKL--SKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGDP--------GQVIY 246 (391)
T ss_dssp EEEEEEEEEE-G--GGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETTEE--------EEEE-
T ss_pred ccccceEEEEeh--HHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeeccC--------CceEE
Confidence 444578999999 789999999998653 478888888899996 599999999999999999743 48999
Q ss_pred eehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccc--c---ceEeec
Q psy5309 875 MAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYP--V---DLRCSG 949 (1618)
Q Consensus 875 ~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p--~---Dl~v~G 949 (1618)
||++++.+|+... |.. .+ .....+.++.||+ . -+++.|
T Consensus 247 VWfdal~~Ylt~~---~~~---------------------------------~~-~~~~~~~~~~~w~~~~~~~~v~~iG 289 (391)
T PF09334_consen 247 VWFDALIGYLTAT---GYL---------------------------------AE-KRGDPEEFKKWWANDSDVEIVHFIG 289 (391)
T ss_dssp HHHHHHTHHHHTT---TTT---------------------------------HH-HTTTSHHHHHHHCST--SEEEEEEE
T ss_pred EcchHHHHHHHHh---ccc---------------------------------cc-cccccchhhhhccccCCceEEEEEc
Confidence 9999999999631 000 00 0001234556662 1 179999
Q ss_pred ccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCC
Q psy5309 950 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEP 1029 (1618)
Q Consensus 950 ~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~ 1029 (1618)
+|++++|.+| | |+.|.+ ..
T Consensus 290 kDi~~fH~i~--------~-------pa~l~a----------------------------------------------~~ 308 (391)
T PF09334_consen 290 KDIIRFHAIY--------W-------PAMLLA----------------------------------------------AG 308 (391)
T ss_dssp GGGHHHHHTH--------H-------HHHHHH----------------------------------------------CT
T ss_pred cchhHHHHHH--------h-------HHHHhc----------------------------------------------cc
Confidence 9998887666 3 332100 13
Q ss_pred CCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHH-----hhHHHHHH
Q psy5309 1030 EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGI-----LRLYTFIE 1104 (1618)
Q Consensus 1030 ~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~-----~kl~N~~~ 1104 (1618)
.++|+++++|||++++|+|||||+||+|+|.+++++||+|++||||++.++..+|.+|+++.+.+.+ ++++|+++
T Consensus 309 ~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~ 388 (391)
T PF09334_consen 309 LPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVN 388 (391)
T ss_dssp B---SEEEEE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHH
T ss_pred CCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHh
Confidence 4579999999999999999999999999999999999999999999999999999999998876544 57888888
Q ss_pred HHH
Q psy5309 1105 WVK 1107 (1618)
Q Consensus 1105 ~l~ 1107 (1618)
|++
T Consensus 389 R~~ 391 (391)
T PF09334_consen 389 RVL 391 (391)
T ss_dssp HHH
T ss_pred ccC
Confidence 864
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=429.27 Aligned_cols=135 Identities=33% Similarity=0.605 Sum_probs=116.2
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++||||||+||+..|++. .+++.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~------~~~~~--------- 65 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK------GGRKK--------- 65 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh------cCccc---------
Confidence 589999999999999999999999999999999999999999999999999999998862 11110
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHh-hhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFA-DASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~-~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+ ..+ +.+|. +|.++++++.+.++++|++||+++||+..
T Consensus 66 -----------------~---------------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~ 104 (312)
T cd00668 66 -----------------K---------------------TIW---IEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDE 104 (312)
T ss_pred -----------------c---------------------ccc---HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCC
Confidence 0 001 11233 36899999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeE
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYT 281 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v 281 (1618)
|.|++ |.|.+.++++|.+|+++|+||++.++|
T Consensus 105 ~~T~~--~~~~~~v~~~f~~L~~~G~iY~~~~~v 136 (312)
T cd00668 105 YITTE--PEYSKAVELIFSRLYEKGLIYRGTHPV 136 (312)
T ss_pred eECCC--HHHHHHHHHHHHHHHHCCCEEeeccee
Confidence 99998 889999999999999999999876544
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=430.55 Aligned_cols=126 Identities=32% Similarity=0.665 Sum_probs=115.7
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
||+|+.|||||||++||||+++++.+|+++||+||+|++|.+++|+|+||+||+..|++. |
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-------g------------ 61 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-------G------------ 61 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc-------C------------
Confidence 689999999999999999999999999999999999999999999999999999887641 1
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCce
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTF 248 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~ 248 (1618)
. +|.++++++.+.++++|++||+++||++.+
T Consensus 62 ----------------------------------------~---------~~~e~~~~~~~~~~~~~~~lgi~~d~~~~~ 92 (314)
T cd00812 62 ----------------------------------------R---------DPEDWTEYNIKKMKEQLKRMGFSYDWRREF 92 (314)
T ss_pred ----------------------------------------C---------CHHHHHHHHHHHHHHHHHHhccceeccccc
Confidence 1 245778888999999999999999999989
Q ss_pred eecCCChhhhHHHHHHHHHHHhcCccccCceeEEEe
Q psy5309 249 ITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFS 284 (1618)
Q Consensus 249 ~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~ 284 (1618)
.|++ |.|.++++++|.+|+++|+||++..+++||
T Consensus 93 ~t~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (314)
T cd00812 93 TTCD--PEYYKFTQWLFLKLYEKGLAYKKEAPVNWC 126 (314)
T ss_pred ccCC--HHHHHHHHHHHHHHHHCCCEEecCceeeee
Confidence 8887 889999999999999999999998888888
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=419.59 Aligned_cols=132 Identities=25% Similarity=0.346 Sum_probs=116.2
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+|+|+.|||||||+|||||+++.+++|+++||+||+|++|.+..|+|+||+||+..|++ .|+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-------~g~----------- 62 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-------EGV----------- 62 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-------cCC-----------
Confidence 58999999999999999999999999999999999999999999999999999998864 121
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCce
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTF 248 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~ 248 (1618)
+ +.++++.+.+.+++++++||+.+| ..+
T Consensus 63 -----------------------------------------~---------~~e~~~~~~~~~~~~l~~LgI~~D--~~~ 90 (319)
T cd00814 63 -----------------------------------------T---------PQELCDKYHEIFKDLFKWLNISFD--YFI 90 (319)
T ss_pred -----------------------------------------C---------HHHHHHHHHHHHHHHHHHcCCcCC--CCe
Confidence 1 335677788899999999998877 334
Q ss_pred eecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCccc
Q psy5309 249 ITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCM 292 (1618)
Q Consensus 249 ~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~ls 292 (1618)
.|++ +.+.+.++++|.+|.++|++|++...+.|||.|++.|+
T Consensus 91 ~tt~--~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~ 132 (319)
T cd00814 91 RTTS--PRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP 132 (319)
T ss_pred eCCC--HHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee
Confidence 5666 77999999999999999999999999999999987765
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >KOG0433|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=406.89 Aligned_cols=241 Identities=19% Similarity=0.257 Sum_probs=193.4
Q ss_pred CcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCcc
Q psy5309 906 PEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHL 985 (1618)
Q Consensus 906 ~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~ 985 (1618)
.|.+|+|||||+.+....+. ..-.++|+|++|.||.|| |
T Consensus 542 tDimDVWFDSGssWs~v~~~------------~~~~~aDv~LEG~DQ~rG------W----------------------- 580 (937)
T KOG0433|consen 542 TDIMDVWFDSGSSWSAVLDN------------EREHVADVYLEGVDQFRG------W----------------------- 580 (937)
T ss_pred CceeeeEecCCCcceeecCC------------CCCcceeeEEecchhcch------H-----------------------
Confidence 47789999999987633221 122478999999999888 3
Q ss_pred chhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEcccee-eCCccceeccCcccChHHHHh
Q psy5309 986 LLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVK 1064 (1618)
Q Consensus 986 ~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~ 1064 (1618)
|+++++++. |.-.++| ++.|++|||++ .+|.|||||+||||+|+.+++
T Consensus 581 ------------FQSsLLTsv----------------A~q~kAP---Yk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~ 629 (937)
T KOG0433|consen 581 ------------FQSSLLTSV----------------AVQNKAP---YKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTD 629 (937)
T ss_pred ------------HHHHHHHHH----------------HHhccCC---chheeeeeeEecCCccchhhcccCcCCHHHHhC
Confidence 444444432 1123345 79999999999 899999999999999999999
Q ss_pred h------cCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHHHHHhcccC---CCCCCCCcchHHHHHH
Q psy5309 1065 K------FSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKEILATQSTL---RTGSQDSFNDKVFLSE 1132 (1618)
Q Consensus 1065 ~------yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~~l~~~~~~---~~~~~~~~~D~~~l~~ 1132 (1618)
. ||+|++|||++.+ +...|+..+++.++ ..+.+++|.++|+++++.+.... -+..++..+|++++.+
T Consensus 630 G~~k~payGaD~LR~WVA~~-~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~q 708 (937)
T KOG0433|consen 630 GSLKQPAYGADGLRFWVAGS-ENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQ 708 (937)
T ss_pred CcccCCCccccceeeeeecc-cccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHH
Confidence 8 9999999999955 78899999998765 46789999999999999876432 1234567789999999
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHhccc----------CcchHHHHHHHHHHHHHhcCcCCCCch
Q psy5309 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQ-AARDKYRELTAAE----------GGMHRTLVLRFVEVQALLLCPVCPHVA 1201 (1618)
Q Consensus 1133 l~~~i~~v~~~~e~~~f~~al~~~~~~l~-~~~n~Yi~~~k~~----------~~~~~~~l~~~l~~l~~lLaP~~P~~a 1201 (1618)
++++++++.+.|++|+|++++..+-.++. ++++.|++..|+. .++++++|..++..++..++||+||++
T Consensus 709 l~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~La 788 (937)
T KOG0433|consen 709 LDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLA 788 (937)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 99999999999999999999998545554 4778999999872 246789999999999999999999999
Q ss_pred hHHHHHhC-CCccccccch
Q psy5309 1202 EHVYQLLG-KDLIQNHLTF 1219 (1618)
Q Consensus 1202 Eei~~~Lg-kd~~svh~~~ 1219 (1618)
||+|+.+. ....-+|.+|
T Consensus 789 eEvwq~lP~~~~~~f~~k~ 807 (937)
T KOG0433|consen 789 EEVWQHLPGSHEKIFRLKW 807 (937)
T ss_pred HHHHHhCCCCCCcccccCc
Confidence 99999996 3223344444
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=356.44 Aligned_cols=176 Identities=27% Similarity=0.315 Sum_probs=149.9
Q ss_pred CCCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccc
Q psy5309 972 PEMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKM 1049 (1618)
Q Consensus 972 ~~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KM 1049 (1618)
.++|+.+ ||+||++|.. ++..+| .+|||.+|.|++||||+|++++|+++++ .+|++.++++|++..+|+||
T Consensus 195 ~s~~g~g-rpgWhiecsa---m~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g---~p~~~~w~H~g~v~~~G~KM 267 (463)
T PRK00260 195 ESPWGKG-RPGWHIECSA---MSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATG---KPFANYWMHNGFVTVNGEKM 267 (463)
T ss_pred CCCCCCC-CCChhHHHHH---HHHHhcCCCcceecCccccCCCchHhHHHHHHHhcC---CCcceEEEEccEEccCCCcc
Confidence 3678767 9999999943 334455 7999999999999999999999999987 35678888889999999999
Q ss_pred eeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHHHHHhcccCCCCCCCCcch
Q psy5309 1050 SKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKEILATQSTLRTGSQDSFND 1126 (1618)
Q Consensus 1050 SKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D 1126 (1618)
|||+||+|+|.+++++||+|++|||++++ ++.++++|+++.++. .+++++|+++++.. ...|
T Consensus 268 SKS~GN~i~~~dll~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~--------------~~~d 332 (463)
T PRK00260 268 SKSLGNFFTIRDLLKKYDPEVLRFFLLSA-HYRSPLNFSEEALEQAKKALERLYNALAETAL--------------GEDD 332 (463)
T ss_pred cCcCCCCCCHHHHHHHcCchHhHHHHHhC-CCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh--------------ccch
Confidence 99999999999999999999999999974 899999999987654 45566666666531 1356
Q ss_pred HHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1127 KVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDKYREL 1170 (1618)
Q Consensus 1127 ~~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~Yi~~ 1170 (1618)
.|+++.++.+++++.++| ++|+++.|+.. ++++++.+|.|++.
T Consensus 333 ~~~~~~l~~~~~~~~~al~ddln~~~Al~~-l~~lv~~~n~~~~~ 376 (463)
T PRK00260 333 EALLAELEEFKERFIEAMDDDFNTPEALAV-LFELAREINRALET 376 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhhc
Confidence 788899999999999999 59999999998 68999999999865
|
|
| >KOG1247|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=319.66 Aligned_cols=275 Identities=21% Similarity=0.268 Sum_probs=213.9
Q ss_pred ChHHHHHHHHhh-cCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCCCCC
Q psy5309 828 HDEVRRNFGASL-NWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTP 906 (1618)
Q Consensus 828 P~~~k~~~~~~l-~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~ 906 (1618)
..++++..++|| ++++..||||...||||+|. |...|+..||||++..+|++
T Consensus 225 S~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl------e~fk~KVfYVWFDA~IGYls--------------------- 277 (567)
T KOG1247|consen 225 SQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL------EKFKDKVFYVWFDAPIGYLS--------------------- 277 (567)
T ss_pred ccchHHHHHHHHHccccccccccccccCCCcCh------hhhcccEEEEEEcCcceEEE---------------------
Confidence 356678889999 69999999999999999999 33457788888887777764
Q ss_pred cceeEEecccCCCCCCCCCChhhHHHHHHhhccccc----cce-EeecccccccchhHHHHHHhhccCCCCCCCCccccC
Q psy5309 907 EVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYP----VDL-RCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRA 981 (1618)
Q Consensus 907 ~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p----~Dl-~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~ 981 (1618)
+.. ...++|..||- +++ .+.|||.+.+| +++| |.++
T Consensus 278 ------------------it~----~yt~ew~kWwknpE~v~LyqFmgKDNVpFH--------tviF-------P~s~-- 318 (567)
T KOG1247|consen 278 ------------------ITK----NYTDEWEKWWKNPENVELYQFMGKDNVPFH--------TVIF-------PCSQ-- 318 (567)
T ss_pred ------------------eeh----hhhHHHHHHhcCHhhhhHHHHhccCCCcce--------eeec-------chhh--
Confidence 111 11356777873 344 48899988887 4443 3221
Q ss_pred CCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHH
Q psy5309 982 NGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 982 ~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~e 1061 (1618)
++. .....+-+++.+..++..+.+|+|||+|-+|...+
T Consensus 319 ---------------------lgt---------------------~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~ 356 (567)
T KOG1247|consen 319 ---------------------LGT---------------------EENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGND 356 (567)
T ss_pred ---------------------hcC---------------------CCCchhheeechhhhhccccCcccccccccccccc
Confidence 100 01233457888889999999999999999999999
Q ss_pred HHhh-cCccceEEeecccCcccccccccHHHH-----HHHHhhHHHHHHHHHHHHHhc-ccCCCCCCCCcchHHHHHHHH
Q psy5309 1062 AVKK-FSADGMRLCLADSGDSVEDANFVESMA-----DAGILRLYTFIEWVKEILATQ-STLRTGSQDSFNDKVFLSEMN 1134 (1618)
Q Consensus 1062 ii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~-----~~~~~kl~N~~~~l~~~l~~~-~~~~~~~~~~~~D~~~l~~l~ 1134 (1618)
+.+. .+++.+||||+...|..+|..|||+.+ .+.++.|+||+||++.++... +...+.-.....|+.+++.++
T Consensus 357 aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~ 436 (567)
T KOG1247|consen 357 AQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVN 436 (567)
T ss_pred cccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccceeecCChHHHHHHHH
Confidence 8875 899999999999999999999999875 346789999999999988753 322222244556899999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhccc---------CcchHHHHHHHHHHHHHhcCcCCCCchhHHH
Q psy5309 1135 LKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAE---------GGMHRTLVLRFVEVQALLLCPVCPHVAEHVY 1205 (1618)
Q Consensus 1135 ~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~---------~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~ 1205 (1618)
++..+..++||..+.++|++. .|++.+..|.|++..+.. .+....+...++..++.||+|+||.++.+|.
T Consensus 437 ~~~~~y~~~me~vklr~~l~~-~m~is~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~ 515 (567)
T KOG1247|consen 437 ELLAKYVAAMEKVKLREALKT-AMEISRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEIL 515 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHH
Confidence 999999999999999999998 699999999999987541 1122234567888899999999999999999
Q ss_pred HHhCCC
Q psy5309 1206 QLLGKD 1211 (1618)
Q Consensus 1206 ~~Lgkd 1211 (1618)
.+++-.
T Consensus 516 kqlnlp 521 (567)
T KOG1247|consen 516 KQLNLP 521 (567)
T ss_pred HHhCCc
Confidence 999754
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=365.82 Aligned_cols=411 Identities=25% Similarity=0.357 Sum_probs=292.9
Q ss_pred ceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHHHH
Q psy5309 45 FFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRFNR 122 (1618)
Q Consensus 45 ~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~~r 122 (1618)
||+|+|||||||.||+||.|+| +++|+.+| +++++|+|++|+.+ ++|.|-.+ ++++=
T Consensus 36 fyvl~mfPYpSG~LHvGH~r~Y----------ti~Dv~aRykRm~GyNVL~PMGwdafGlPae~----~A~~~------- 94 (814)
T COG0495 36 FYVLVMFPYPSGALHVGHVRNY----------TIGDVIARYKRMQGYNVLHPMGWDAFGLPAEN----AAIKI------- 94 (814)
T ss_pred eEEEeCCCCCCCCcccCccccc----------cHHHHHHHHHHhcCCeecccCcccccCchHHH----HHHHh-------
Confidence 9999999999999999999999 77777777 67999999999999 88888443 33322
Q ss_pred HcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHH
Q psy5309 123 LKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQ 202 (1618)
Q Consensus 123 m~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~ 202 (1618)
| .| |-. .++. ++ +.+.+
T Consensus 95 --~--------~~----P~~-wt~~-----------------------------------------------ni-~~~k~ 111 (814)
T COG0495 95 --G--------TD----PAK-WTYY-----------------------------------------------NI-AYMKK 111 (814)
T ss_pred --C--------CC----hHH-HHHH-----------------------------------------------HH-HHHHH
Confidence 1 01 211 1111 00 12345
Q ss_pred HHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc--ccCceeecCCChhhhHHHHHHHHHHHhc-----Cccc
Q psy5309 203 IMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD--WRRTFITTDSNPFFDSFVRWQFMRLRDR-----HKIK 275 (1618)
Q Consensus 203 ~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D--w~~~~~T~d~~p~y~~~v~~~f~~L~~k-----G~iy 275 (1618)
.|++||.+.||.|+|++|++-+.+|.+||+.+|...|+.+- -..-|++.|.+|.-+ ++..+. |...
T Consensus 112 qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlan-------eqv~~g~~~r~~~~V 184 (814)
T COG0495 112 QLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLAN-------EQVIDGGCWRCGEPV 184 (814)
T ss_pred HHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCcccc-------ceeecCCcccCCCce
Confidence 67899999999999999998899999999999999997655 222344444443333 222222 2444
Q ss_pred cCceeEEEecCCCCcccc-----hhhccC-----------CCCCCeeEEEEEEeeccCCccccccCCCCCcEEEEeecCc
Q psy5309 276 YGKRYTVFSPRDNQPCMD-----HDRASG-----------EGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRP 339 (1618)
Q Consensus 276 ~g~~~v~w~p~~~t~lsd-----~Ev~~~-----------~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrP 339 (1618)
.....+.|..+. |..+| .+.... .-++|++...+.|.+... .....+.|+||||
T Consensus 185 ~~kel~qw~~ki-t~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~---------~~~~~~~vfttr~ 254 (814)
T COG0495 185 EIKELTQWFFKI-TDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGE---------EEIVSIEVFTTRP 254 (814)
T ss_pred eEeeeEEEEEEe-chhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCc---------ccceeeeeeeccC
Confidence 445566677664 33332 222221 126777766666653110 0035799999999
Q ss_pred cccccCceEEeCCCCC----------------cee--------------------------ecccCCccEEEEec-cccc
Q psy5309 340 ETMYGQTNAWVRPDMA----------------YIA--------------------------LSCLDSKPVFLVAA-TLRP 376 (1618)
Q Consensus 340 eTl~g~~avaV~P~~~----------------Y~~--------------------------~~~~~~~~~~iv~~-~~~~ 376 (1618)
.|++|.+.+++.|++. |+. .+|++++.++|+.. .+..
T Consensus 255 dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~ 334 (814)
T COG0495 255 DTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLM 334 (814)
T ss_pred ccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCcccc
Confidence 9999999999999862 111 03666777887655 4555
Q ss_pred CccCCCeeEEecCCCCeeEEEcCCC---cE--EEeccc-----------cccc-cccCCCchhhhHHHHhhhhccCccee
Q psy5309 377 ETMYGQTNAWVRPDMAYIAFTTATG---EV--FVCTER-----------SARN-MAYQGFTEVEGKINVLLRLTGQVCIR 439 (1618)
Q Consensus 377 ~t~~Gt~~v~v~P~~~y~~~~~~~~---~~--~i~~~~-----------~~~~-~~~~g~~~~~a~~~ii~~l~~~~l~r 439 (1618)
. +|||+++-.|+||-.+++.++. ++ .|.... ...+ ..+.|++.+++ ...+|
T Consensus 335 ~--ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a----------~~~~~ 402 (814)
T COG0495 335 E--YGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEA----------KVKIR 402 (814)
T ss_pred c--ccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHH----------HHHHH
Confidence 4 9999999999999777776541 11 111110 0111 25666664433 22345
Q ss_pred cCCEEEeccccceeeccCCchH-HHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCc--cCCCCCcchhhcc
Q psy5309 440 SGDECVVALCDQWYLDYGEPTW-KAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGT--KLPWDEQWLIESL 516 (1618)
Q Consensus 440 ~g~~i~~~l~~QWfl~~~~~~~-k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~--~iP~~~~w~i~~~ 516 (1618)
|| ++-...+|||++|+.-+| +.+++.+...|.++|.+.++.+....+||+.|.+.|..+-|+ |+||++.|+++++
T Consensus 403 ~~--l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~ 480 (814)
T COG0495 403 CG--LVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESL 480 (814)
T ss_pred Hh--HHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEec
Confidence 56 555678999999999999 999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceecc
Q psy5309 517 SDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCS 596 (1618)
Q Consensus 517 ~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~ 596 (1618)
+|+|+|++.||++..+. ....+-.+||++|.+ .+..+|++|+||||+|.+++
T Consensus 481 ~~s~~~ret~Tm~~~~~---------------sswy~~r~~d~~~~~-------------~~~~~~e~~~yW~PVD~yig 532 (814)
T COG0495 481 PDSTAYRETDTMDTFID---------------SSWYYLRFFDPIFLG-------------ELPFDREEFNYWYPVDLYIG 532 (814)
T ss_pred CCCceeeehhhhhHhcc---------------cccccHhhcChhcCc-------------cchhcHHHHhcccChheeec
Confidence 99999999999986443 334455555655543 14568999999999999999
Q ss_pred cc
Q psy5309 597 GK 598 (1618)
Q Consensus 597 ~~ 598 (1618)
|.
T Consensus 533 G~ 534 (814)
T COG0495 533 GI 534 (814)
T ss_pred ch
Confidence 97
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=346.79 Aligned_cols=189 Identities=22% Similarity=0.254 Sum_probs=155.9
Q ss_pred CCCCccccCCCccchhh-hHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCcccee
Q psy5309 973 EMWPRGIRANGHLLLNS-AKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSK 1051 (1618)
Q Consensus 973 ~~wp~~lr~~g~~~~~e-~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSK 1051 (1618)
++|+.+ ||+||++|.. +++++. +.++||.||.|++||||+|++++|+++++.. +|.+.++++|||+++|+||||
T Consensus 244 SpwG~G-rPGWHiECsam~~~~lg--~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~--~~v~y~~H~G~L~i~G~KMSK 318 (651)
T PTZ00399 244 SPWGKG-RPGWHIECSAMASNILG--DPIDIHSGGIDLKFPHHDNELAQSEAYFDKH--QWVNYFLHSGHLHIKGLKMSK 318 (651)
T ss_pred CCCCCC-CCCchHHHHHHHHHHcC--CcceeeccCCCCCCCcchhHHHHHHHhhCCC--CCCcEEEEEEEEEeccchhhh
Confidence 345555 9999999965 455442 2899999999999999999999999999853 577888888999999999999
Q ss_pred ccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHH---hhHHHHHHHHHHHHHhcccCCCCCCCCcchHH
Q psy5309 1052 SEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGI---LRLYTFIEWVKEILATQSTLRTGSQDSFNDKV 1128 (1618)
Q Consensus 1052 S~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~---~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~ 1128 (1618)
|+||||+|.+++++||+|++|||+++. ++.+|++|+++.+.... +++.|++.++...+.... .+........|++
T Consensus 319 SLGNfItp~dlLekygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~-~~~~~~~~~~d~~ 396 (651)
T PTZ00399 319 SLKNFITIRQALSKYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESE-LTSPQKWTQHDFE 396 (651)
T ss_pred cCCCcccHHHHHHHcChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccCCHHHHH
Confidence 999999999999999999999999976 99999999999876554 456677666655544321 1111123457889
Q ss_pred HHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1129 FLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDKYRE 1169 (1618)
Q Consensus 1129 ~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~Yi~ 1169 (1618)
++..+..+...+.++| ++|+++.|+.. ++++++.+|.|++
T Consensus 397 Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~-L~eLv~~~N~yi~ 437 (651)
T PTZ00399 397 LNELFEETKSAVHAALLDNFDTPEALQA-LQKLISATNTYLN 437 (651)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHh
Confidence 9999999999999999 78999999998 6999999999996
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=333.53 Aligned_cols=186 Identities=20% Similarity=0.162 Sum_probs=146.3
Q ss_pred CCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccce
Q psy5309 973 EMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMS 1050 (1618)
Q Consensus 973 ~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMS 1050 (1618)
+||+.+ ||+|||||.. |+..+| .+|||+||.|++||||+|+++++++..+ .++.+.+++||||+++|+|||
T Consensus 253 SPWG~G-RPGWHIECSa---Ms~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g---~~~a~yW~H~G~v~~~G~KMS 325 (557)
T PLN02946 253 SPWGPG-RPGWHIECSA---MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACC---DSNISYWIHNGFVTVDSEKMS 325 (557)
T ss_pred CCCCCC-CCcHHHHHHH---HHHHHcCCCeeEeccccccCCCcccchHHHHHHHhC---CCCCceeeEeeEEEeCCCCcC
Confidence 678777 9999999943 455666 7999999999999999999999998875 345788999999999999999
Q ss_pred eccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhh---HHHHHHHHHHHHHhcccCCCCCCCCcchH
Q psy5309 1051 KSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILR---LYTFIEWVKEILATQSTLRTGSQDSFNDK 1127 (1618)
Q Consensus 1051 KS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~k---l~N~~~~l~~~l~~~~~~~~~~~~~~~D~ 1127 (1618)
||+||++++.+++++||+|++|||+++. ++.++++|+++.++..... +.+++.++...+...... .. ....+.
T Consensus 326 KSlGN~itl~dll~~y~~dalR~~lLs~-hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~--~~-~~~~~~ 401 (557)
T PLN02946 326 KSLGNFFTIRQVIDLYHPLALRLFLLGT-HYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDST--FE-KDSVPP 401 (557)
T ss_pred CcCCCcCCHHHHHHhcCccceeeeeecc-CCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--cc-ccccch
Confidence 9999999999999999999999999986 7999999999988766554 555555554333221000 00 001122
Q ss_pred HHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1128 VFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDKYREL 1170 (1618)
Q Consensus 1128 ~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~Yi~~ 1170 (1618)
.+...+..+...+.++| +++++..|+.. ++++++..|.+++.
T Consensus 402 ~~~~~~~~~~~~f~~Al~DDlntp~Al~~-l~~~vk~~N~~~~~ 444 (557)
T PLN02946 402 DTLNCINKFHDEFVTSMSDDLHTPVALAA-LSEPLKTINDLLHT 444 (557)
T ss_pred hhHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhhh
Confidence 23345566778899999 69999999998 79999999998864
|
|
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=312.34 Aligned_cols=166 Identities=22% Similarity=0.199 Sum_probs=133.2
Q ss_pred CCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccce
Q psy5309 973 EMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMS 1050 (1618)
Q Consensus 973 ~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMS 1050 (1618)
++|+.+ ||+||+||.. |+...| .+|||.||.|++||||+|++++|.+.+++. +|++.++++|++..+|+|||
T Consensus 217 spwG~G-RPGWHiECsa---m~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~--~~~~~w~H~g~l~~~G~KMS 290 (411)
T TIGR03447 217 SPFGPG-RPGWHIECSA---IATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVR--RMARHYVHAGMIGLDGEKMS 290 (411)
T ss_pred CCCCCC-CChhHHHHHH---HHHHHcCCceecccCcccccccchHhHHHHHHHhcCCC--CcceEEEECCEECcCCCCcc
Confidence 677766 9999999943 355566 799999999999999999999999998743 57889999999999999999
Q ss_pred eccCcccChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHH
Q psy5309 1051 KSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129 (1618)
Q Consensus 1051 KS~GNvV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~ 1129 (1618)
||+||+|+|.++++. |++|++|||++++ ++.++++|+++.++++...+.++.+.+... . .
T Consensus 291 KSlGN~i~~~dl~~~g~dp~~lRl~lls~-~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~----~----~---------- 351 (411)
T TIGR03447 291 KSLGNLVFVSKLRAAGVDPAAIRLGLLAG-HYRQDRDWTDAVLAEAEARLARWRAALAAT----D----A---------- 351 (411)
T ss_pred CcCCCCCCHHHHHhcCCCcccEEEEEecC-CCCCCCccCHHHHHHHHHHHHHHHHHHhhc----c----c----------
Confidence 999999999999886 8999999999954 999999999999877666555544443311 0 0
Q ss_pred HHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHH
Q psy5309 1130 LSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARD 1165 (1618)
Q Consensus 1130 l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n 1165 (1618)
..+..+..++.++| +++++..|+.. ++++.+..|
T Consensus 352 -~~~~~~~~~~~~al~dDln~p~a~~~-l~~~~~~~n 386 (411)
T TIGR03447 352 -PDATDLIARLRQHLANDLDTPAALAA-VDNWAAAAL 386 (411)
T ss_pred -chHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHH
Confidence 01234556777888 69999999998 677776544
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=311.62 Aligned_cols=172 Identities=21% Similarity=0.184 Sum_probs=136.9
Q ss_pred CCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccce
Q psy5309 973 EMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMS 1050 (1618)
Q Consensus 973 ~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMS 1050 (1618)
+||+.+ ||+||+||.. ++...| ++|||.||.|++||||+|++++|.+++++. +|++.++++|++..+|+|||
T Consensus 190 spwG~G-RPGWHiECsa---m~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~--~~~~~w~H~g~l~~~G~KMS 263 (384)
T PRK12418 190 SPFGPG-RPGWHIECSA---IALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGER--RFARHYVHAGMIGLDGEKMS 263 (384)
T ss_pred CCCCCC-CChhHHHHHH---HHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCC--CcceEEEECCEECCCCCccc
Confidence 677766 9999999943 355566 799999999999999999999999988743 46777777788889999999
Q ss_pred eccCcccChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHH
Q psy5309 1051 KSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129 (1618)
Q Consensus 1051 KS~GNvV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~ 1129 (1618)
||+||+|+|.++++. ++++++|||++ +++++++++|+++.++++.+++.++.+.+... . .
T Consensus 264 KSlGN~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~-~-------~---------- 324 (384)
T PRK12418 264 KSRGNLVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAEAEARLARWRAAAALP-A-------G---------- 324 (384)
T ss_pred CcCCCcCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHHHHHHHHHHHHHHhcc-c-------c----------
Confidence 999999999998653 44448999999 55999999999999887766666555544321 0 0
Q ss_pred HHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHh
Q psy5309 1130 LSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDKYRELT 1171 (1618)
Q Consensus 1130 l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~Yi~~~ 1171 (1618)
..+..+.+++.++| +++++..|+.. ++++++.+|.|+...
T Consensus 325 -~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~ 365 (384)
T PRK12418 325 -PDAADVVARVRAALADDLDTPGALAA-VDGWATDALEGGGDD 365 (384)
T ss_pred -chHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhccCCC
Confidence 02334567888888 58999999998 799999999997653
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=324.66 Aligned_cols=177 Identities=22% Similarity=0.223 Sum_probs=140.7
Q ss_pred CCCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCC-------------CCCcCcEE
Q psy5309 972 PEMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDE-------------PEMWPRGI 1036 (1618)
Q Consensus 972 ~~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~-------------~~~~pk~v 1036 (1618)
++||+.+ ||+||+||.. |+..+| ++|||+||.|++||||+|+++|+.++.+.. +.+|.+.+
T Consensus 421 ~SPWG~G-RPGWHIECSA---Ms~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryW 496 (699)
T PRK14535 421 ESPWGNG-RPGWHIECSA---MSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYW 496 (699)
T ss_pred cCCCCCC-CCchHHHHHH---HHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEE
Confidence 3778777 9999999943 355566 799999999999999999999998877641 12477899
Q ss_pred EEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccC
Q psy5309 1037 RANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTL 1116 (1618)
Q Consensus 1037 ~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~ 1116 (1618)
+++|||+++|+|||||+||+++|.+++++||+|++|||++++ +++++++|+++.++++...+.++.+.+..... .
T Consensus 497 mHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLss-hYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~----~ 571 (699)
T PRK14535 497 LHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRA-HYRSPLNYSDAHLDDAKGALTRLYTTLKNTPA----A 571 (699)
T ss_pred EECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcC-CCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhh----c
Confidence 999999999999999999999999999999999999999985 89999999999887766555555444433210 0
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHH
Q psy5309 1117 RTGSQDSFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDKY 1167 (1618)
Q Consensus 1117 ~~~~~~~~~D~~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~Y 1167 (1618)
. . .....+..+.+.+.++| +++++..|+.. ++++++..|.+
T Consensus 572 ~--~-------~~~~~l~~~~~~f~~AL~DDlntp~Ala~-L~~lvk~iN~~ 613 (699)
T PRK14535 572 E--F-------MLSENVNDYTRRFYAAMNDDFGTVEAVAV-LFELAGEVNKT 613 (699)
T ss_pred c--c-------hhhhhHHHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHH
Confidence 0 0 01123456677888898 69999999998 78888877765
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=322.68 Aligned_cols=176 Identities=24% Similarity=0.296 Sum_probs=138.8
Q ss_pred CCCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccc
Q psy5309 972 PEMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKM 1049 (1618)
Q Consensus 972 ~~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KM 1049 (1618)
.++|+.+ ||+||++|.. ++..+| .+|||.+|.|++||||+|++++|+++++ .++++.++++|++..+|+||
T Consensus 194 ~spwG~g-rpgWhiecsa---m~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g---~~~~~~~~h~g~v~~~g~KM 266 (465)
T TIGR00435 194 DSPWGKG-RPGWHIECSA---MNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFG---KQLAKYWMHNGFLMIDNEKM 266 (465)
T ss_pred cCCCCCC-CCCcHhHHHH---HHHHhcCCCceeeccccccccchHHHHHHHHHHhcC---CCCCcEEEEeeEEEecCccc
Confidence 3678777 9999999943 344456 5899999999999999999999999887 35688999999999999999
Q ss_pred eeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHHHHHhcccCCCCCCCCcch
Q psy5309 1050 SKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKEILATQSTLRTGSQDSFND 1126 (1618)
Q Consensus 1050 SKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D 1126 (1618)
|||+||+|+|.+++++||+|++|||+++. ++.++++|+++.+++ .+.+++|+++++........ .. .
T Consensus 267 SKS~GN~i~~~dll~~~~~dalR~~ll~~-~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~~~-----~~----~ 336 (465)
T TIGR00435 267 SKSLGNFFTVRDVLKNYDPEILRYFLLSV-HYRSPLDFSEELLEAAKNALERLYKALRVLDTTLAYSG-----NQ----S 336 (465)
T ss_pred cccCCCcCCHHHHHHHCCHHHHHHHHHhC-CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----cc----c
Confidence 99999999999999999999999999976 799999999997655 45677777766643322100 00 0
Q ss_pred HHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHH
Q psy5309 1127 KVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARD 1165 (1618)
Q Consensus 1127 ~~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n 1165 (1618)
..+......+...+.++| +++++..|+.. ++++++..|
T Consensus 337 ~~~~~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n 375 (465)
T TIGR00435 337 LNKFPDEKEFEARFVEAMDDDLNTANALAV-LFELAKSIN 375 (465)
T ss_pred cccchhHHHHHHHHHHHHhhccCHHHHHHH-HHHHHHHhh
Confidence 001112334567788888 69999999998 788888888
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-33 Score=362.57 Aligned_cols=460 Identities=20% Similarity=0.289 Sum_probs=264.2
Q ss_pred CCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHH
Q psy5309 43 DKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRF 120 (1618)
Q Consensus 43 ~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~ 120 (1618)
++|+++.|+||+||.+|+||.+++ ++.|+.+| +++++|.|++||.+ .+|.+ + -+..
T Consensus 23 ~~f~i~~~PPy~nG~lH~GH~~~~----------~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp--------i----e~~v 80 (601)
T PF00133_consen 23 PKFFIHDPPPYANGDLHIGHALNK----------TIKDIIARYKRMQGYNVLFPPGWDCHGLP--------I----EAKV 80 (601)
T ss_dssp GEEEEEE---BTSSS-BHHHHHHH----------HHHHHHHHHHHCTTSEEEEEEEEB--SHH--------H----HHHH
T ss_pred CcEEEEeCCCCCCCcccHHHHHHH----------HHHHHHHHHHHhCCcEeCCCCCcCCCCcc--------h----hhhH
Confidence 579999999999999999998888 44444444 45899999999966 33322 1 1122
Q ss_pred HHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHH
Q psy5309 121 NRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQ 200 (1618)
Q Consensus 121 ~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~ 200 (1618)
.+..|.+- +-+-+-+..+...+. ..+.+.+... .+
T Consensus 81 ek~l~~~~----~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~-~~ 115 (601)
T PF00133_consen 81 EKKLGIKE----KKDRKDLGREEFREE----------------------------------------CREWAEEFIE-EQ 115 (601)
T ss_dssp HHHTTTTS----HHHCSCSTHHHHHHH----------------------------------------HHHHHHHHHH-HH
T ss_pred HHhhcccc----cccccccccccchhh----------------------------------------hcchhhhhhh-hh
Confidence 33333221 000011112211111 1112222222 23
Q ss_pred HHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc------ccCceeecCCChhhhHHHHHHHHHHHhc---
Q psy5309 201 WQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD------WRRTFITTDSNPFFDSFVRWQFMRLRDR--- 271 (1618)
Q Consensus 201 ~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D------w~~~~~T~d~~p~y~~~v~~~f~~L~~k--- 271 (1618)
.+.++++|++.||.+.|.+..+-+.++..+++.+|.+.|+.+- |...-.|.- -+. .+..+
T Consensus 116 ~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~l----sd~-------Ev~~~~~~ 184 (601)
T PF00133_consen 116 KEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTAL----SDH-------EVEYKEVK 184 (601)
T ss_dssp HHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-----GG-------GEEEEEEE
T ss_pred hhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccch----hhh-------hccccccc
Confidence 5678899999999999998888899999999999999998665 443322221 111 00000
Q ss_pred C-cccc------C--ceeEEEecCCCCcccchhhccCCCCCCe-eEEEEEEeeccCCccccccCCCCCcEEEEeecCccc
Q psy5309 272 H-KIKY------G--KRYTVFSPRDNQPCMDHDRASGEGVGPQ-EYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPET 341 (1618)
Q Consensus 272 G-~iy~------g--~~~v~w~p~~~t~lsd~Ev~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeT 341 (1618)
+ .+|. + ...+.|..+-.|..++.=+.-. |. .|. ..+..++++..+-+.
T Consensus 185 ~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vn----P~~~Y~------------------~~~~~~i~~~~~~~~ 242 (601)
T PF00133_consen 185 SPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVN----PDFDYV------------------INGERYIVAKDLVEK 242 (601)
T ss_dssp EEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-----TTSEEE------------------ETTEEEEEEHHHHHH
T ss_pred CceEEEEEEecCccceEEEEEechhhHHhCCeeEEEC----CCccce------------------eCCeeehHHHHHHHH
Confidence 0 0111 0 2456777777776665333221 11 121 012233333333322
Q ss_pred cccCceEEeCCCCCc------eeecccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCC----cEEEecccc
Q psy5309 342 MYGQTNAWVRPDMAY------IALSCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERS 410 (1618)
Q Consensus 342 l~g~~avaV~P~~~Y------~~~~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~ 410 (1618)
+.......+ .+.+| ...+|+.++.++|+++. +.++ +|||+|+++|+|+..||..+.. .+.++++++
T Consensus 243 ~~~~~~~~~-~~~~g~~L~g~~~~~P~~~~~~~vi~~~~V~~~--~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G 319 (601)
T PF00133_consen 243 LSKQEKTKL-EDFRGKELVGLKYIHPLTGREVPVIPDDFVDMD--KGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDG 319 (601)
T ss_dssp HHTTTSSSE-EEEECHHHTTSEEE-TTSSSSEEEEEETTS-SS--STTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTS
T ss_pred HHhhhhhcc-cccCcceecCcEeccccccceeEEEcccccccc--cchhhhhhcccCCHHHHHHHhhcCceeeEecCCCc
Confidence 221111110 00011 12357778889988865 6666 9999999999999998887531 223334443
Q ss_pred ccc---cccCCCchhhhHHHHhhhhccCc--------------ceecCCEEEeccccceeeccCCchHHHHHHHHhcccc
Q psy5309 411 ARN---MAYQGFTEVEGKINVLLRLTGQV--------------CIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMN 473 (1618)
Q Consensus 411 ~~~---~~~~g~~~~~a~~~ii~~l~~~~--------------l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~ 473 (1618)
... ..|.|+.+++|+..|++.|.+.+ |.|||++|++++++||||+|++ ++..+.+++++++
T Consensus 320 ~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~--~k~~~l~~~~~i~ 397 (601)
T PF00133_consen 320 RFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDD--WKKKALEALEKIK 397 (601)
T ss_dssp TBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHH--HHHHHHHHHHTSE
T ss_pred eEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHH--hHHHHHhhcccce
Confidence 322 57999999999999999998765 4499999999999999999987 7888889999999
Q ss_pred ccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccc-eEEEeeccccCcccccCCCC---ccccc-
Q psy5309 474 TYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYM-AYYTVAHLLQGGTFRGENGN---ALNIK- 548 (1618)
Q Consensus 474 ~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~-a~~~~~~~~~~~~~~g~~~~---~~~v~- 548 (1618)
++|+..++.+.+|++|++||||||||+||||||| |..++.++..+.. ..+.++..+... -.+.... .+.+.
T Consensus 398 ~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPi---w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 473 (601)
T PF00133_consen 398 FYPESYRKRFENWIDNLRDWCISRQRYWGTPIPI---WYCEDCGEVLVIESTIELIADRVEKE-GIDAWLHKPAEDKLPC 473 (601)
T ss_dssp ESSSTCHHHHHHHHHT--EEE-EESSSSSEBETE---EEETTSEEEECCGGHHHHHHHHSTHH-HHSCTSSHHHHHHHTT
T ss_pred EEcccchhhhhhhccccccchhhccCCCCcccee---eecccCcccccccccccccccccccc-cccccccccccccccc
Confidence 9999999999999999999999999999999994 5555544332211 111111111100 0000000 00010
Q ss_pred ---ccCCCcceeeeeeccCCCCCCC-CCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhh
Q psy5309 549 ---AEDLTPEVWDYVFFKSAPFPPK-CRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYY 624 (1618)
Q Consensus 549 ---~~~gtg~v~~~~~~~~~~~~~~-~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1618)
.-.....|+|.+|-.+ ..|.. .+.|. .+|++|++|||.|++++|. +.++.+..+|.++
T Consensus 474 ~~~~~~~~~dvlD~WfdSg-~~~~~~~~~~~----~~~~~~~~~~P~D~~~~G~-------------D~~~~W~~~~l~~ 535 (601)
T PF00133_consen 474 CGGELRRDTDVLDTWFDSG-LWPFAVLGWPE----NDREEFEYWYPVDLYIEGK-------------DQIRGWFQSSLFL 535 (601)
T ss_dssp TSSEEEEHS-EE-HHHHHC-TCHHHHTTSTT----CSCHHHHHHSSBSEEEEEG-------------GGTTTHHHHHHHH
T ss_pred cccceEEeeeecccccccc-CCccccccccc----ccchhccccCCcccccCCc-------------cchhhHHHHhHhh
Confidence 0012346788755432 11111 12222 2689999999999999987 3457788899998
Q ss_pred hhhhh
Q psy5309 625 TVAHL 629 (1618)
Q Consensus 625 ~~~~~ 629 (1618)
+++-.
T Consensus 536 ~~~l~ 540 (601)
T PF00133_consen 536 SVALF 540 (601)
T ss_dssp HHHHS
T ss_pred ccccc
Confidence 88754
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >KOG0436|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=297.34 Aligned_cols=361 Identities=17% Similarity=0.201 Sum_probs=249.4
Q ss_pred EEEEccceee--CCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHh
Q psy5309 1035 GIRANGHLLL--NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILAT 1112 (1618)
Q Consensus 1035 ~v~~hG~vl~--~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~ 1112 (1618)
.++.+|+++. ..+.+|-|...+.+-.++++.-++++-+.-+ ..++...|+.| ++.+.+|..|.+.+...+++
T Consensus 146 ~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsm----Esg~~vv~~kE--~NY~FrLSkfqk~l~d~lrk 219 (578)
T KOG0436|consen 146 RVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSM----ESGNPVVWRKE--DNYFFRLSKFQKPLEDHLRK 219 (578)
T ss_pred HHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeee----ccCCceeEecc--cceeeeHHhhhhHHHHHHhc
Confidence 4556788883 4689999999999999999999999855432 22344445433 23467788888888888887
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-------------HHHHHHHHHHHHHHhcc-cCcch
Q psy5309 1113 QSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTG-------------FFELQAARDKYRELTAA-EGGMH 1178 (1618)
Q Consensus 1113 ~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~-------------~~~l~~~~n~Yi~~~k~-~~~~~ 1178 (1618)
++.+..+. . ..+...+.+.+.+.++.+++--..+ ++.|.+++-.|+..... +....
T Consensus 220 NP~fvqPs-------~---~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N 289 (578)
T KOG0436|consen 220 NPRFVQPS-------Y---FHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQN 289 (578)
T ss_pred CCCccCch-------H---HHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhcc
Confidence 75432111 1 1223333444445555444322110 12233333333333211 00000
Q ss_pred HHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCC
Q psy5309 1179 RTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGN 1258 (1618)
Q Consensus 1179 ~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGN 1258 (1618)
. + .-+.--+|.+ .+.+|||+..+|..+||+.+++. +.++|+.|.+|||++.+|.|||||+||
T Consensus 290 ~-------k---~~ls~~wPat----~HvIGKDIlrFHavYWPafLmaA----GlplP~~I~vHghwt~ngmKMsKSLGN 351 (578)
T KOG0436|consen 290 L-------K---TALSFGWPAT----LHVIGKDILRFHAVYWPAFLMAA----GLPLPKMIFVHGHWTKNGMKMSKSLGN 351 (578)
T ss_pred c-------c---ceeecCCCce----eeehhhhhhhhhhhhhHHHHHhc----CCCCccEEEEeeeeeecceecchhhcc
Confidence 0 0 0011124432 36789999999999999988874 678899999999999999999999999
Q ss_pred cCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccC-CCCcchhhHHHHHhhhhhhhhhh
Q psy5309 1259 FLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVEDANFVESMADAGILRLYT 1337 (1618)
Q Consensus 1259 vI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~-gnl~~~~~r~~~~~~~~~~~~~~ 1337 (1618)
||||.+++++||+|++||||+..+..+.|.+|+++.+... .|.+ |++. ||| +||....-- +
T Consensus 352 vvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~---~n~~-----La~~lG~L---lnRc~gkkl-------n 413 (578)
T KOG0436|consen 352 VVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKI---VNAH-----LANTLGNL---LNRCLGKKL-------N 413 (578)
T ss_pred ccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHH---HHHH-----HHHHHHHH---HHHHhhccc-------C
Confidence 9999999999999999999999999999999999976554 4443 3333 444 555543100 0
Q ss_pred HHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc----
Q psy5309 1338 FIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---- 1413 (1618)
Q Consensus 1338 ~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---- 1413 (1618)
+.+.+.+. ..+ .......+.-+.+.++++.+.+.+.||++...+|++++. +..+..|.|++..+||...
T Consensus 414 ----~sn~e~~l-~~~-s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~-si~n~~ntlvq~~aPWkl~~dsq 486 (578)
T KOG0436|consen 414 ----ISNCESTL-VVD-SPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVL-SIGNAGNTLVQQRAPWKLFKDSQ 486 (578)
T ss_pred ----hhcccccc-ccC-CcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHH-HHHHhhhhhhhhcCCceeccccC
Confidence 00101100 000 111223466688899999999999999999999999985 9999999999999999872
Q ss_pred --------hhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhh
Q psy5309 1414 --------HRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYT 1454 (1618)
Q Consensus 1414 --------~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~ 1454 (1618)
...++|+++|++++||+|+||..|.+++++||+...+|...
T Consensus 487 ~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qrsl~ 535 (578)
T KOG0436|consen 487 VSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQRSLI 535 (578)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhcccc
Confidence 12568999999999999999999999999999998876543
|
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=322.23 Aligned_cols=217 Identities=26% Similarity=0.332 Sum_probs=191.1
Q ss_pred hHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhcc
Q psy5309 1202 EHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADS 1281 (1618)
Q Consensus 1202 Eei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~ 1281 (1618)
-++.+++|||+..+|...||..++.. +...|+.+.+|||++.+|+|||||+||||+|.++++.||+|+|||||++.
T Consensus 288 ~e~vhfIGKDii~FHav~wPamL~~~----~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~ 363 (558)
T COG0143 288 TELVHFIGKDIIRFHAVYWPAMLMAA----GLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARE 363 (558)
T ss_pred ceEEEEeccccCcchhhHHHHHHHhC----CCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHh
Confidence 36788999999999999999987775 45589999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcccCHHHHHHHHHHhhhhhhhhhcccC-CCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCc
Q psy5309 1282 GDSVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSF 1360 (1618)
Q Consensus 1282 ~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~-gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1618)
.|.++|.+||++. +++++|++ |+|. ||| +||+.+|++ +.|++..+....... .
T Consensus 364 ~p~~~D~dFs~~~---f~~rvN~d-----L~n~lgNl---~~R~~~fi~--------------k~~~g~vp~~~~~~~-~ 417 (558)
T COG0143 364 LPEGSDGDFSWED---FVERVNAD-----LANKLGNL---ANRTLGFIN--------------KYFDGVVPAAGAPDL-E 417 (558)
T ss_pred CCCCCCCCCCHHH---HHHHHHHH-----HHHHHHHH---HHHHHHHHH--------------hccCCcCCccccccc-h
Confidence 9999999999985 56688887 5555 766 899988855 888876543321123 6
Q ss_pred chHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc----------hhHHHHHHHHHHHHhhc
Q psy5309 1361 NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM----------HRTLVLRFVEVQALLLC 1430 (1618)
Q Consensus 1361 ~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~----------~~~~~l~~~~~~a~ll~ 1430 (1618)
.|+.++..+.++...+.++|++++|++|++.++ ++...+|.|++..+||... ..+++++++|++|++|+
T Consensus 418 ~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~-~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~ 496 (558)
T COG0143 418 EDEELLALAREALEAVAEAMEKYEFRKALEEIM-ALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLY 496 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999985 9999999999999999963 13778999999999999
Q ss_pred CcchhhHHHHHHHhccccc
Q psy5309 1431 PVCPHVAEHVEMNLKIKET 1449 (1618)
Q Consensus 1431 P~~P~~a~~i~~~L~~~~~ 1449 (1618)
||||++|++|+++||++..
T Consensus 497 P~mP~~a~ki~~~L~~~~~ 515 (558)
T COG0143 497 PFMPETAEKIWDQLGLEED 515 (558)
T ss_pred CcCcchHHHHHHHhCCccc
Confidence 9999999999999999765
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=309.03 Aligned_cols=186 Identities=22% Similarity=0.187 Sum_probs=145.6
Q ss_pred CCCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccc
Q psy5309 972 PEMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKM 1049 (1618)
Q Consensus 972 ~~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KM 1049 (1618)
.+||+.+ ||+||++|.. ++..+| ++|||+||.|++||||+|+++++.++.+ .+|++.++++|+++++|+||
T Consensus 208 ~SpWG~G-RPGWHIECsa---Ms~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g---~~~~~~w~h~g~l~~~g~KM 280 (490)
T PRK14536 208 DSPWGRG-YPGWHIECSA---MSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATG---KPWVRYWLHHEFLLMNKGKM 280 (490)
T ss_pred cCCCCCC-CCChHHHHHH---HHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcC---CCcceEEEEcCEEeecCccc
Confidence 3678777 9999999954 455667 7899999999999999999999998875 46789999999999999999
Q ss_pred eeccCcccChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCC--C---CC-
Q psy5309 1050 SKSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTG--S---QD- 1122 (1618)
Q Consensus 1050 SKS~GNvV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~--~---~~- 1122 (1618)
|||+||+|++.+++++ |+++++||++++. ++.++++|+++.+.++.+.+.++.+++..+.......+.. . ..
T Consensus 281 SKSlGN~itl~dll~~g~~~~alR~~lls~-~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (490)
T PRK14536 281 SKSAGQFLTLSSLQEKGFQPLDYRFFLLGG-HYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECA 359 (490)
T ss_pred cccCCCcccHHHHHhcCCCHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999999998 9999999999985 9999999999999888887777777776653221100000 0 00
Q ss_pred C-cchHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHH
Q psy5309 1123 S-FNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDK 1166 (1618)
Q Consensus 1123 ~-~~D~~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~ 1166 (1618)
. ..+......+..+...+.++| +++++..|+.. ++++++..|.
T Consensus 360 ~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~-l~~~~~~~n~ 404 (490)
T PRK14536 360 AERVAESRASESELLLTDFRAALEDDFSTPKALSE-LQKLVKDTSV 404 (490)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHhhh
Confidence 0 000111234556778889999 69999999998 6888876663
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-30 Score=331.09 Aligned_cols=223 Identities=19% Similarity=0.169 Sum_probs=184.0
Q ss_pred hHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHh-cCcceeeeehhc
Q psy5309 1202 EHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLAD 1280 (1618)
Q Consensus 1202 Eei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~-yGaD~lRl~l~~ 1280 (1618)
-+++|++|||+..+|...||+++++.- .+..+|+.+.+|||++.+|+|||||+||||+|.+++++ ||+|++||||++
T Consensus 301 ~~~~hfiGKDi~~fH~i~wPa~L~a~g--~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~ 378 (801)
T PLN02610 301 VELYQFMGKDNVPFHTVMFPSTLLGTG--ENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLT 378 (801)
T ss_pred ceEEEEEeeecchhHHHHHHHHHHhCC--CCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhh
Confidence 356899999999999999999877631 12347899999999999999999999999999999996 999999999999
Q ss_pred cCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccC-CCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCC
Q psy5309 1281 SGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDS 1359 (1618)
Q Consensus 1281 ~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~-gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1618)
.++.++|.+||++. +++++|++ |+|. ||| +||+.+|... +..+.+++..+........
T Consensus 379 ~~p~~~D~dFs~~~---f~~~~Nsd-----L~n~lGNl---v~R~~~~i~~----------~~~k~~~g~vp~~~~~~~~ 437 (801)
T PLN02610 379 NRPEVSDTLFTWAD---LQAKLNSE-----LLNNLGNF---INRVLSFIAK----------PPGAGYGSVIPDAPGAESH 437 (801)
T ss_pred cCCCCCCCcCCHHH---HHHHHHHH-----HHHHHHHH---HHHHHHHHHh----------hhhhccCCcCCCccccccc
Confidence 99999999999985 56677776 4444 666 8888776430 0003455543221111234
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhc
Q psy5309 1360 FNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLC 1430 (1618)
Q Consensus 1360 ~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~ 1430 (1618)
..|++++++++++++++.++|++|+|++|++.++ +|...+|+|++..+||... ..+++++++|++++||+
T Consensus 438 ~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~-~l~~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~la~LL~ 516 (801)
T PLN02610 438 PLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAM-SISSEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLE 516 (801)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999985 9999999999999999751 12567899999999999
Q ss_pred CcchhhHHHHHHHhcccc
Q psy5309 1431 PVCPHVAEHVEMNLKIKE 1448 (1618)
Q Consensus 1431 P~~P~~a~~i~~~L~~~~ 1448 (1618)
||||++|++|+++||+..
T Consensus 517 PfmP~~aeeI~~~Lg~~~ 534 (801)
T PLN02610 517 PFMPSFSKEVLKQLNLPP 534 (801)
T ss_pred CcccHHHHHHHHHhCCCc
Confidence 999999999999999864
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=297.19 Aligned_cols=225 Identities=24% Similarity=0.335 Sum_probs=178.2
Q ss_pred EecccCCCCCCCCCChh-hHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCC---CCCCccccCCCccch
Q psy5309 912 VFFKAAPFPPKCRVPKA-KLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEP---EMWPRGIRANGHLLL 987 (1618)
Q Consensus 912 ~f~~~~~~~~~~~~~~~-~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~---~~wp~~lr~~g~~~~ 987 (1618)
|+|+...+++|+.+++. .++++... .++++...++++++|+||+.+. +|+| |||+.+ ||+||+||
T Consensus 142 VYFdv~~f~~YG~LS~~~~le~l~~g--------ar~~~~~~Krnp~DFvLWK~sk--~gEp~W~SPWG~G-RPGWHIEC 210 (464)
T COG0215 142 VYFDVSKFKDYGKLSGRDSLEELQAG--------ARVEVDEEKRNPLDFVLWKAAK--PGEPSWDSPWGKG-RPGWHIEC 210 (464)
T ss_pred EEEecccchhhHhhcCCCChhHHhhc--------cccccccccCCchhheeeccCC--CCCCCCCCCCCCC-CCchhHHH
Confidence 78888889999998855 55444333 4667777799999999886532 3554 778777 99999999
Q ss_pred hhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhh
Q psy5309 988 NSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1065 (1618)
Q Consensus 988 ~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~ 1065 (1618)
. .|+..+| .+|||+||.|++||||+||+||+.+.++. .+|.+.++++|||+++|+|||||+|||++..+++++
T Consensus 211 S---aM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~--~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~ 285 (464)
T COG0215 211 S---AMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGV--KPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKK 285 (464)
T ss_pred H---HHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCC--CcceeEeEEcceeeecCcCcccccCCeeEHHHHHhh
Confidence 3 3456677 89999999999999999999999999873 456899999999999999999999999999999999
Q ss_pred cCccceEEeecccCcccccccccHHHHHHHH---hhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q psy5309 1066 FSADGMRLCLADSGDSVEDANFVESMADAGI---LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETED 1142 (1618)
Q Consensus 1066 yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~---~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~ 1142 (1618)
|++.++||+++++ ++.+.++||++.++++. .+|.|+++++....... ... .......++.+
T Consensus 286 ~~p~~lR~~lls~-HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~-------~~~--------~~~~~~~~f~~ 349 (464)
T COG0215 286 YDPEVLRLFLLSS-HYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGDA-------ELA--------DLKEFEARFRE 349 (464)
T ss_pred cCHHHHHHHHHHH-HhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccc--------hhHHHHHHHHH
Confidence 9999999999977 99999999999887655 55555555544222110 000 34556677888
Q ss_pred HH-hhccHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1143 HY-TKMLFKEALRTGFFELQAARDKYRE 1169 (1618)
Q Consensus 1143 ~~-e~~~f~~al~~~~~~l~~~~n~Yi~ 1169 (1618)
+| ++|++..|+.. ++++++..|..++
T Consensus 350 al~DDfnt~~al~~-l~~l~~~~~~~~~ 376 (464)
T COG0215 350 ALDDDFNTPKALAV-LFELAKEINRLLE 376 (464)
T ss_pred HHHhccCcHHHHHH-HHHHHHHHhhhhh
Confidence 88 69999999998 7888877655544
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-29 Score=321.09 Aligned_cols=212 Identities=23% Similarity=0.313 Sum_probs=178.6
Q ss_pred HHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCC
Q psy5309 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1205 ~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~ 1284 (1618)
++.+|+|+..+|..+||+.+++. +.++|+.|.+|||++++|+|||||+||+|+|.+++++||+|+|||||+++++.
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~~~----~~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~ 332 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLMAL----GLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPF 332 (648)
T ss_pred eEEEeeeecchhHHHHHHHHHhC----CCCCCcEEEecceEEECCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCC
Confidence 56789999999999999876653 45789999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCHHHHHHHHHHhhhhhhhhhcccC-CCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchH
Q psy5309 1285 VEDANFVESMADAAVKKFSADGMRLCLADS-GDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDK 1363 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~-gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 1363 (1618)
++|.+||++.+. +.+|++ |+|. ||+ +||+..+. .+.+++.. +........|+
T Consensus 333 ~~D~~fs~~~~~---~~~n~~-----l~~~lgNl---~~R~~~~~--------------~~~~~~~~--p~~~~~~~~D~ 385 (648)
T PRK12267 333 GSDGDFSPEALV---ERINSD-----LANDLGNL---LNRTVAMI--------------NKYFDGEI--PAPGNVTEFDE 385 (648)
T ss_pred CCCCCCCHHHHH---HHHHHH-----HHHHHhHH---HHHHHHHH--------------HHhcCCcC--CCCCCCchhhH
Confidence 999999998654 455554 3333 555 67765543 24455432 22234556799
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc-----------hhHHHHHHHHHHHHhhcCc
Q psy5309 1364 VFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM-----------HRTLVLRFVEVQALLLCPV 1432 (1618)
Q Consensus 1364 ~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~-----------~~~~~l~~~~~~a~ll~P~ 1432 (1618)
|++++++++++++.++|++|+|++|++.++ +|+..+|.|++..+||... ..++++++++.++++|+||
T Consensus 386 ~ll~~l~~~~~~v~~~~e~~~~~~al~~i~-~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~ 464 (648)
T PRK12267 386 ELIALAEETLKNYEELMEELQFSRALEEVW-KLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPF 464 (648)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999985 9999999999999999642 1257899999999999999
Q ss_pred chhhHHHHHHHhcccc
Q psy5309 1433 CPHVAEHVEMNLKIKE 1448 (1618)
Q Consensus 1433 ~P~~a~~i~~~L~~~~ 1448 (1618)
||++|++|+++||++.
T Consensus 465 ~P~~ae~i~~~Lg~~~ 480 (648)
T PRK12267 465 MPETSKKIFEQLGLEE 480 (648)
T ss_pred cchHHHHHHHHcCCCc
Confidence 9999999999999853
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=307.85 Aligned_cols=213 Identities=21% Similarity=0.290 Sum_probs=177.2
Q ss_pred HHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCC
Q psy5309 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGD 1283 (1618)
Q Consensus 1204 i~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~ 1283 (1618)
..+.+|||+..+|...||+.+... +..+|+.+++|||++.+|+|||||+||+|+|.+++++||+|++||||++.++
T Consensus 323 ~v~~iGKDii~fH~i~wpa~l~~~----g~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p 398 (616)
T PLN02224 323 SLHLIGKDILRFHAVYWPAMLMSA----GLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVE 398 (616)
T ss_pred ceEEEeecccccHHHHHHHHHHHC----CCCCCcEEEecccEecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCC
Confidence 367889999999999999876542 4678999999999888999999999999999999999999999999999999
Q ss_pred CCcCcccCHHHHHHHHHHhhhhhhhhhcccC-CCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcch
Q psy5309 1284 SVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFND 1362 (1618)
Q Consensus 1284 ~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~-gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 1362 (1618)
.++|.+||++.+ .+.+|++ |+|. ||+ +||+..++. +.+++. .+........|
T Consensus 399 ~~~d~~fs~~~~---~~~~Nse-----Lan~lgNl---l~R~l~~~~--------------k~~~~~--~~~~~~~~~~d 451 (616)
T PLN02224 399 FGNDGDYSEDRF---IKIVNAH-----LANTIGNL---LNRTLGLLK--------------KNCEST--LVEDSTVAAEG 451 (616)
T ss_pred CcCCCCCCHHHH---HHHHHHH-----HHHHHHHH---HHHHHHHHH--------------HhcCCc--CCCcccccccc
Confidence 999999999864 5566655 3333 555 777776643 445442 12111234568
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhccc--c----------hhHHHHHHHHHHHHhhc
Q psy5309 1363 KVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGG--M----------HRTLVLRFVEVQALLLC 1430 (1618)
Q Consensus 1363 ~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~--~----------~~~~~l~~~~~~a~ll~ 1430 (1618)
++++++++++++++.++|++|+|++|++.+ ++|...+|+|++.++||.. . ..++++++++++++||+
T Consensus 452 ~~l~~~l~~li~~v~~~me~~~~~~Al~~i-~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLa 530 (616)
T PLN02224 452 VPLKDTVEKLVEKAQTNYENLSLSSACEAV-LEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALS 530 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 5999999999999999942 1 12568999999999999
Q ss_pred CcchhhHHHHHHHhcccc
Q psy5309 1431 PVCPHVAEHVEMNLKIKE 1448 (1618)
Q Consensus 1431 P~~P~~a~~i~~~L~~~~ 1448 (1618)
||||++|++|+++||++.
T Consensus 531 Pf~P~~Ae~I~~~Lg~~~ 548 (616)
T PLN02224 531 PIAPCLSLRIYSQLGYSE 548 (616)
T ss_pred ccccHHHHHHHHHhCCCc
Confidence 999999999999999754
|
|
| >KOG0434|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=277.57 Aligned_cols=280 Identities=15% Similarity=0.152 Sum_probs=208.3
Q ss_pred cccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhcc-CCCCcCcccCH
Q psy5309 1215 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADS-GDSVEDANFVE 1292 (1618)
Q Consensus 1215 vh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~-~~~~~D~~fs~ 1292 (1618)
.-||||..++..+....+.+|+++++++|.|+. +|+|||||+.|+.+|..+|++||||+||+||..+ ......+.|++
T Consensus 564 QTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFke 643 (1070)
T KOG0434|consen 564 QTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKE 643 (1070)
T ss_pred cccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccch
Confidence 368999998888887788999999999999999 9999999999999999999999999999999887 23458899999
Q ss_pred HHHHHHHHHhhhhh---hhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHH
Q psy5309 1293 SMADAAVKKFSADG---MRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEM 1369 (1618)
Q Consensus 1293 ~~l~~~~~~~n~~~---~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l 1369 (1618)
+.+.++++.....| +||++.|.. +..... ...|..... ......+|+||++..
T Consensus 644 eGVrevvk~v~lPW~NsyrF~~qn~~-------~~~~~~--------------g~~f~~~~~---~~S~NvmDrWI~a~~ 699 (1070)
T KOG0434|consen 644 EGVREVVKDVLLPWYNSYRFLVQNAA-------LLKKET--------------GKDFVFDDS---VTSSNVMDRWILAST 699 (1070)
T ss_pred hhHHHHHHhhhhhhhHHHHHHHHHHH-------Hhcccc--------------CCccccccc---cccchhHHHHHHHHH
Confidence 99999777666443 233322210 000000 001111011 112345899999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccc
Q psy5309 1370 NLKIKETEDHYTKMLFKEALRTGFFELQA-ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKE 1448 (1618)
Q Consensus 1370 ~~l~~~v~~~~e~~~f~~a~~~i~~~f~~-~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~ 1448 (1618)
+.++.-+++.|++|++..++-.++ .|++ ++|+|+.+
T Consensus 700 qslv~fv~~eM~~YrLytVvp~ll-kfiD~LTNwYiR~------------------------------------------ 736 (1070)
T KOG0434|consen 700 QSLVGFVREEMDQYRLYTVVPRLL-KFIDELTNWYIRF------------------------------------------ 736 (1070)
T ss_pred HHHHHHHHHHHHheehhhhHHHHH-HHHHHhhhhheeh------------------------------------------
Confidence 999999999999999999999987 8887 89999844
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCC---------
Q psy5309 1449 TEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK--------- 1519 (1618)
Q Consensus 1449 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~--------- 1519 (1618)
.|+|+-.+....+ ...+..+|..+|..++++||||+||++|.+||+|.+
T Consensus 737 -------------nRrrlkGe~G~~d---------~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~ 794 (1070)
T KOG0434|consen 737 -------------NRRRLKGENGEHD---------CHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEK 794 (1070)
T ss_pred -------------hhhhhcCCCchHH---------HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCC
Confidence 3455443221111 123557889999999999999999999999998852
Q ss_pred -CCceEeccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCCCcccccCCceEEEEEcccCChh
Q psy5309 1520 -KGSIVKARWPEGG--PIDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPW 1596 (1618)
Q Consensus 1520 -~~sv~~~~~p~~~--~~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1596 (1618)
..|||...+|.+. .+|+.++...+.++.+|...|..+.+ + .+.++-|.+-.+.+.. -++.
T Consensus 795 ~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R~iRer--------n--------~islKtPLK~~ivi~~-d~~~ 857 (1070)
T KOG0434|consen 795 SERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRER--------N--------TISLKTPLKELIVIHS-DEEY 857 (1070)
T ss_pred ccceeEEeecCCchhhhccchHHHHHHHHHHHHHHHHHHhhc--------c--------CCcccCchhheEEEcC-CHHH
Confidence 4789999999876 35888999999999999888887653 2 3456667665555542 2344
Q ss_pred HHHH
Q psy5309 1597 QSIV 1600 (1618)
Q Consensus 1597 ~~~~ 1600 (1618)
++.+
T Consensus 858 ledi 861 (1070)
T KOG0434|consen 858 LEDI 861 (1070)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=280.14 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=137.7
Q ss_pred CCCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccc
Q psy5309 972 PEMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKM 1049 (1618)
Q Consensus 972 ~~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KM 1049 (1618)
.++|+.+ ||+||+||.. ++...| .+|||+||.|++||||+|+++++.+..+ .++++.++++|+++++|+||
T Consensus 208 ~spWG~G-rPgWHiECsa---m~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g---~~~~~~W~H~g~l~~~g~KM 280 (481)
T PRK14534 208 DSPWGFG-YPSWHLECAA---MNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLN---KKWCDMFVHGEFLIMEYEKM 280 (481)
T ss_pred cCCCCCc-CCcHHHHHHH---HHHHHcCCcceEEecccccCCCcchhHHHHHhhhcC---CCcceEEEEecEEEecCcee
Confidence 3678877 9999999943 344455 7899999999999999999999988765 46789999999999999999
Q ss_pred eeccCcccChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCC-CCCCCcchH
Q psy5309 1050 SKSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRT-GSQDSFNDK 1127 (1618)
Q Consensus 1050 SKS~GNvV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~-~~~~~~~D~ 1127 (1618)
|||+||++++.+++++ |+++++|||+++. ++.++++|+++.++++.+.+.++.+++...+........ ..... .+.
T Consensus 281 SKSlGN~i~l~dll~~~~~~~alR~~lls~-~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 358 (481)
T PRK14534 281 SKSNNNFITIKDLEDQGFSPLDFRYFCLTA-HYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKD-LEN 358 (481)
T ss_pred cccCCCcccHHHHHhcCCChhHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc-ccc
Confidence 9999999999999997 9999999998866 999999999999887765555544444333211100000 00000 000
Q ss_pred HHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHH
Q psy5309 1128 VFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDK 1166 (1618)
Q Consensus 1128 ~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~ 1166 (1618)
........+..++.++| +++++..|+.. ++++++..|.
T Consensus 359 ~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~~~~k~~n~ 397 (481)
T PRK14534 359 IEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LWDIIKDDNL 397 (481)
T ss_pred chhhhHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHH
Confidence 00011234556888888 69999999998 6888877664
|
|
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=302.86 Aligned_cols=231 Identities=25% Similarity=0.323 Sum_probs=173.7
Q ss_pred HHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCC
Q psy5309 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1205 ~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~ 1284 (1618)
++.+|+|+..+|...||+++.+.-. +..+|+.+++|||++++|+|||||+||+|+|.+++++||+|++|||+++.++.
T Consensus 290 ~~~~G~D~~~Fh~~~~p~~l~~~~~--~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~ 367 (556)
T PRK12268 290 YYFIGKDNIPFHSIIWPAMLLGSGE--PLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPE 367 (556)
T ss_pred EEEEeeccCcchHHHHHHHHHhcCC--CCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCC
Confidence 4567999999999988876554321 25678999999999999999999999999999999999999999999999899
Q ss_pred CcCcccCHHHHHHHHHHhhhhhhhhhccc-CCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchH
Q psy5309 1285 VEDANFVESMADAAVKKFSADGMRLCLAD-SGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDK 1363 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~~~~~~l~n-~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 1363 (1618)
++|++|+++.+.. ..+.. +.+ ++|+ ++|+..+ +.+.+++. .+ .......|+
T Consensus 368 ~~d~~f~~~~~~~---~~~~~-----~~~~l~n~---~~r~~~~--------------~~~~~~~~--~~-~~~~~~~d~ 419 (556)
T PRK12268 368 NSDTDFTWEEFVR---RVNSE-----LADKYGNL---VNRVLSF--------------IEKYFGGI--VP-PGELGDEDR 419 (556)
T ss_pred CCCCCCCHHHHHH---HHhHH-----hhhhHHHH---HHHHHHH--------------HHHhcCCc--CC-CCcCCcccH
Confidence 9999999987543 22211 111 1222 4554333 22333322 11 223567899
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHH
Q psy5309 1364 VFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMN 1443 (1618)
Q Consensus 1364 ~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~ 1443 (1618)
|++++++++++.+.++|++|+|+.|++.++ +|++++|+|++..+||..
T Consensus 420 ~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~-~~~~~~n~yi~~~kpw~~------------------------------- 467 (556)
T PRK12268 420 ELIAEAEALFKEVGELLEAGEFKKALEEIM-ELAREANKYLDEKAPWKL------------------------------- 467 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHcCCChhh-------------------------------
Confidence 999999999999999999999999999985 999999999998875321
Q ss_pred hcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCCce
Q psy5309 1444 LKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSI 1523 (1618)
Q Consensus 1444 L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~sv 1523 (1618)
.+ . ++.+++ ....++.++++.+++||+||+||+|||||+.|+. +++
T Consensus 468 ------------------~~------~---~~~~~~------~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~-~~~ 513 (556)
T PRK12268 468 ------------------AK------T---DRERAA------TVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-ENI 513 (556)
T ss_pred ------------------hc------C---CHHHHH------HHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC-CCC
Confidence 00 0 011111 1223556889999999999999999999999975 467
Q ss_pred EeccCCCC
Q psy5309 1524 VKARWPEG 1531 (1618)
Q Consensus 1524 ~~~~~p~~ 1531 (1618)
..+.||..
T Consensus 514 ~~~~w~~~ 521 (556)
T PRK12268 514 EKLTWESL 521 (556)
T ss_pred cccchhhh
Confidence 77788753
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=308.63 Aligned_cols=210 Identities=23% Similarity=0.320 Sum_probs=173.4
Q ss_pred HHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccC
Q psy5309 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSG 1282 (1618)
Q Consensus 1203 ei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~ 1282 (1618)
++.+.+|+|+..+|...||..+.+ .+..+|+.|++|||++++|+|||||+||+|+|.+++++||+|++||||++.+
T Consensus 285 ~~v~~iGkDi~~fH~i~wpa~l~a----~g~~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~ 360 (673)
T PRK00133 285 ELYHFIGKDIIYFHTLFWPAMLEG----AGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKL 360 (673)
T ss_pred eEEEEEeecchhHHHHHHHHHHHh----CCCCCCCEEeeeccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcC
Confidence 346778999999999999987776 2567899999999999999999999999999999999999999999999998
Q ss_pred CCC-cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcc
Q psy5309 1283 DSV-EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFN 1361 (1618)
Q Consensus 1283 ~~~-~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1361 (1618)
+.+ +|.+||++.+.. ..|.. ++.++||+ ++|+.++.. +.+++..+ ....
T Consensus 361 ~~~~~D~~Fs~~~~~~---~~n~~----l~~~l~Nl---~~R~~~~~~--------------k~~~~~~~------~~~~ 410 (673)
T PRK00133 361 PETIDDLDFNWEDFQQ---RVNSE----LVGKVVNF---ASRTAGFIN--------------KRFDGKLP------DALA 410 (673)
T ss_pred CCCCCCCCCCHHHHHH---HHHHH----HHHHHHHH---HHHHHHHHH--------------HhcCCCCC------CCcc
Confidence 998 999999986543 33322 11111333 566554432 34443211 2356
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCc
Q psy5309 1362 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPV 1432 (1618)
Q Consensus 1362 D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~ 1432 (1618)
|+|++++++++++++.++|++|+|++|++.++ +|+.++|+|++.++||... ..++++++++.++++|+||
T Consensus 411 d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~-~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf 489 (673)
T PRK00133 411 DPELLEEFEAAAEKIAEAYEAREFRKALREIM-ALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPV 489 (673)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 99999999999999999999999999999985 9999999999999999641 2267889999999999999
Q ss_pred chhhHHHHHHHhccc
Q psy5309 1433 CPHVAEHVEMNLKIK 1447 (1618)
Q Consensus 1433 ~P~~a~~i~~~L~~~ 1447 (1618)
||++|++||++||++
T Consensus 490 ~P~~ae~i~~~Lg~~ 504 (673)
T PRK00133 490 LPELAERAEAFLNLE 504 (673)
T ss_pred hchHHHHHHHHhCCC
Confidence 999999999999985
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-27 Score=298.29 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=171.1
Q ss_pred HHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccC
Q psy5309 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSG 1282 (1618)
Q Consensus 1203 ei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~ 1282 (1618)
++.+.+|+|+..+|...||.++.+. +..+|+.+++|||++++|+|||||+||+|+|.+++++||+|++|||+++.+
T Consensus 283 ~~v~~~G~Di~~~h~~~~~a~l~~~----~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~ 358 (530)
T TIGR00398 283 ELIHFIGKDIVRFHTIYWPAMLMGL----GLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKER 358 (530)
T ss_pred eEEEEEecccchhHHHHHHHHHHhC----CCCCCCEEEeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCC
Confidence 4567789999999999999876653 356899999999999999999999999999999999999999999999988
Q ss_pred CCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcch
Q psy5309 1283 DSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFND 1362 (1618)
Q Consensus 1283 ~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 1362 (1618)
+..+|++|+++.+++.. |.. +.+ .++| .++|+..+. .+.+++. .+........|
T Consensus 359 ~~~~d~~f~~~~l~~~~---n~~-l~~---~l~n---~~~r~~~~~--------------~~~~~~~--~~~~~~~~~~d 412 (530)
T TIGR00398 359 PLGKDGDFSWEDFVERV---NAD-LAN---KLGN---LLNRTLGFI--------------KKYFNGV--LPSEDITDEED 412 (530)
T ss_pred CCCCCCCCCHHHHHHHH---HHH-HHH---HHHH---HHHHHHHHH--------------HHhcCCc--CCCCcccchhh
Confidence 89999999999766532 211 000 1122 245554432 2333322 22222345679
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHH
Q psy5309 1363 KVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEM 1442 (1618)
Q Consensus 1363 ~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~ 1442 (1618)
++++++++++.+.+.++|++|+|+.|++.++ +|++++|.|++.++||..
T Consensus 413 ~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~-~l~~~~n~Yi~~~kpw~~------------------------------ 461 (530)
T TIGR00398 413 KKLLKLINEALEQIDEAIESFEFRKALREIM-KLADRGNKYIDENKPWEL------------------------------ 461 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHhcCCChhh------------------------------
Confidence 9999999999999999999999999999985 999999999998886421
Q ss_pred HhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcC
Q psy5309 1443 NLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1518 (1618)
Q Consensus 1443 ~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~ 1518 (1618)
.+ + +. +. ..++.++.++++.++++|+||+||+|||+|++|+
T Consensus 462 -------------------~~------~-~~-~~--------~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~ 502 (530)
T TIGR00398 462 -------------------FK------Q-SP-RL--------KELLAVCSMLIRVLSILLYPIMPKLSEKILKFLN 502 (530)
T ss_pred -------------------cC------C-hH-HH--------HHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhC
Confidence 00 0 00 01 1466788899999999999999999999999997
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >KOG2007|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-26 Score=264.27 Aligned_cols=239 Identities=21% Similarity=0.252 Sum_probs=184.9
Q ss_pred EecccCCCCC-CCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCC---CCCCccccCCCccch
Q psy5309 912 VFFKAAPFPP-KCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEP---EMWPRGIRANGHLLL 987 (1618)
Q Consensus 912 ~f~~~~~~~~-~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~---~~wp~~lr~~g~~~~ 987 (1618)
|||+..+++. |+.+.++. +..+++ -.......+|.+.+|++|..+. +||| +||+.+ ||+|||||
T Consensus 180 VYFdv~kf~~~YgKL~G~~-~~~~~g--------Eg~l~ds~KR~p~DFALWKAsK--~gEP~WeSPWG~G-RPGWHIEC 247 (586)
T KOG2007|consen 180 VYFDVDKFPHSYGKLVGQR-KNLQEG--------EGVLSDSRKRSPADFALWKASK--PGEPSWESPWGKG-RPGWHIEC 247 (586)
T ss_pred EEEecccccchhhhhcCch-hhcccC--------cCccccccCCChhhhhhhhhcC--CCCCCCCCCCCCC-CCCceeee
Confidence 7887777763 55555432 111111 0000123478899999986543 4665 888877 99999999
Q ss_pred hhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhh
Q psy5309 988 NSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1065 (1618)
Q Consensus 988 ~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~ 1065 (1618)
.. | .-..| ++|||.||.|+.||||+||++|+|+++.. ..|.+.++++||+..+|+|||||++|||+..|++++
T Consensus 248 Sa-M--as~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~--~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~ 322 (586)
T KOG2007|consen 248 SA-M--ASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDD--SQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKK 322 (586)
T ss_pred HH-H--HHHhhccccceecCcccccCCCcccHHHHHHHHhcC--CccceeEEEcCeeeeccchhhhhhccceeHHHHHHh
Confidence 54 2 22234 89999999999999999999999999974 458999999999999999999999999999999999
Q ss_pred cCccceEEeecccCcccccccccHHHHHHH---HhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q psy5309 1066 FSADGMRLCLADSGDSVEDANFVESMADAG---ILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETED 1142 (1618)
Q Consensus 1066 yGaDalRl~l~~~~~~~~D~~fs~~~~~~~---~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~ 1142 (1618)
|.++.||++++.+ .+.++++|+++.+..+ -..+.||+.-+..+.+... +.......+..+.+.+.....+|..
T Consensus 323 ~sp~qLRl~fl~~-~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~---~~~~~~~~e~~l~~~~~~t~~~vh~ 398 (586)
T KOG2007|consen 323 YSPRQLRLAFLLH-QWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK---PFEKLSEKEAELLEDFGKTQTAVHA 398 (586)
T ss_pred cCHHHHHHHHHHH-HhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhccChHHHHHHHhhhhHHHHHHH
Confidence 9999999999977 8999999999876543 3455666655555554311 1234567788899999999999999
Q ss_pred HH-hhccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5309 1143 HY-TKMLFKEALRTGFFELQAARDKYRELTA 1172 (1618)
Q Consensus 1143 ~~-e~~~f~~al~~~~~~l~~~~n~Yi~~~k 1172 (1618)
++ ++++...+++. +.+++..+|.|+...+
T Consensus 399 al~d~~dT~~v~~~-~~~lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 399 ALCDNFDTPRVMEA-IRELVSQGNAYIRESG 428 (586)
T ss_pred HHHhccccHHHHHH-HHHHHhhhhHHHHHhc
Confidence 98 89999999998 7899999999998765
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-26 Score=297.96 Aligned_cols=201 Identities=24% Similarity=0.268 Sum_probs=152.4
Q ss_pred cchhhhhhhcccCCCCCCcccceeccccccc-----ccc---------------------------ccccccCCcCCHHH
Q psy5309 1217 LTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-----NSA---------------------------KMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1217 ~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-----~G~---------------------------KMSKSlGNvI~P~~ 1264 (1618)
|+|+ +++...-...+..|++.+++||||++ +|+ |||||+||+|+|.+
T Consensus 539 Rf~~-~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ 617 (842)
T TIGR00396 539 RFWH-KFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQE 617 (842)
T ss_pred HHHH-HHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHH
Confidence 6654 33333222345789999999999998 788 99999999999999
Q ss_pred HHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHH
Q psy5309 1265 AVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKE 1344 (1618)
Q Consensus 1265 ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~ 1344 (1618)
++++||||++|||+++++++..|++|+++.+++..+.++.. +++.+++..
T Consensus 618 ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl------------------------------~~~~~~~~~ 667 (842)
T TIGR00396 618 IVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRV------------------------------WNLFYNILG 667 (842)
T ss_pred HHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHH------------------------------HHHHHHHHh
Confidence 99999999999999988889999999999998876666632 122222111
Q ss_pred HhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q psy5309 1345 ILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKML-FKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVE 1423 (1618)
Q Consensus 1345 ~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~-f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~ 1423 (1618)
..++.... ....+..+|+|+++++++++++|+++|++|+ |+.|++++ ++|++. +.+
T Consensus 668 ~~~~~~~~-~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l-~~f~n~------L~~--------------- 724 (842)
T TIGR00396 668 ELDGKTYL-TPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAM-MILLNA------LYK--------------- 724 (842)
T ss_pred hhcccccC-CcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHH------HHh---------------
Confidence 11110000 1123456899999999999999999999998 99999997 488741 111
Q ss_pred HHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhc
Q psy5309 1424 VQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLC 1503 (1618)
Q Consensus 1424 ~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~lla 1503 (1618)
.. ...++.++|..+++|||
T Consensus 725 -------------------------------------~~------------------------~~~~l~~~l~~ll~lLa 743 (842)
T TIGR00396 725 -------------------------------------AK------------------------KDALYLEYLKGFLTVLS 743 (842)
T ss_pred -------------------------------------hh------------------------hHHHHHHHHHHHHHHHh
Confidence 00 00246689999999999
Q ss_pred cchhhHHHHHHHHcCCC-CceEeccCCCCC
Q psy5309 1504 PVCPHVAEHVYQLLGKK-GSIVKARWPEGG 1532 (1618)
Q Consensus 1504 Pi~P~~aEeiw~~l~~~-~sv~~~~~p~~~ 1532 (1618)
||+||+|||+|+.|+.. +||+.++||+.+
T Consensus 744 Pf~PhiaEElW~~l~~~~~sv~~~~wP~~d 773 (842)
T TIGR00396 744 PFAPHLAEELWEKLGSEPFIIKQAKWPKVD 773 (842)
T ss_pred hhhhHHHHHHHHHhCCCCCeeecCCCCCCC
Confidence 99999999999999755 589999999976
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=296.35 Aligned_cols=182 Identities=25% Similarity=0.382 Sum_probs=146.5
Q ss_pred CCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhh
Q psy5309 1231 EPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLC 1310 (1618)
Q Consensus 1231 ~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~ 1310 (1618)
.+..|++.+++|||| |||||+||+|+|.+++++||||++|||+++++++.+|++||++.+++..+.++..
T Consensus 555 ~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl----- 624 (805)
T PRK00390 555 SSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRV----- 624 (805)
T ss_pred cCCcchhhheecCcE-----EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHH-----
Confidence 356889999999999 9999999999999999999999999999998899999999999988876666632
Q ss_pred cccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q psy5309 1311 LADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALR 1390 (1618)
Q Consensus 1311 l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~ 1390 (1618)
+++.++.....+. . ......+|+|+++++++++++++++|++|+|+.|++
T Consensus 625 -------------------------~~~~~~~~~~~~~---~--~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~ 674 (805)
T PRK00390 625 -------------------------WRLVVDAKGEAGA---L--DVAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIA 674 (805)
T ss_pred -------------------------HHHHHHhhhcccc---c--CcccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222221111110 0 012345799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhh
Q psy5309 1391 TGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQ 1470 (1618)
Q Consensus 1391 ~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~ 1470 (1618)
.+ ++|++..+.|.+ +
T Consensus 675 ~l-~~f~n~lsk~~~-----------------------------------------------------------~----- 689 (805)
T PRK00390 675 AL-MELVNALYKAED-----------------------------------------------------------E----- 689 (805)
T ss_pred HH-HHHHHHHHHHHH-----------------------------------------------------------H-----
Confidence 97 488742211110 0
Q ss_pred hhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCCceEeccCCCCC
Q psy5309 1471 AARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGG 1532 (1618)
Q Consensus 1471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~sv~~~~~p~~~ 1532 (1618)
.+++++.++++.+++|||||+||+|||+|+.|+.++||+.+.||+++
T Consensus 690 ---------------~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~~sv~~~~wP~~~ 736 (805)
T PRK00390 690 ---------------QDKAVLREALEILVRLLAPFAPHLAEELWEKLGHEGSIANAPWPTAD 736 (805)
T ss_pred ---------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCCeeEecCCCCCC
Confidence 35668889999999999999999999999999877899999999876
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-25 Score=295.11 Aligned_cols=199 Identities=21% Similarity=0.241 Sum_probs=153.3
Q ss_pred cchhhhhhhcccCCCCCCcccceeccccccc----------ccc------------------------------------
Q psy5309 1217 LTFFIYIHTAIWGDEPEMWPRGIRANGHLLL----------NSA------------------------------------ 1250 (1618)
Q Consensus 1217 ~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld----------~G~------------------------------------ 1250 (1618)
|+|+.+++..+.. ....|++.+++||||++ +|+
T Consensus 635 Rfw~~~l~~~g~~-~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (963)
T PLN02563 635 RFWHKVLYDIGVV-STKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDP 713 (963)
T ss_pred HHHHHHHHHhhcc-CCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCC
Confidence 8899888877764 45789999999999985 466
Q ss_pred ---------ccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchh
Q psy5309 1251 ---------KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDA 1321 (1618)
Q Consensus 1251 ---------KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~ 1321 (1618)
|||||+||||+|.++|++||||+||||++++++..+|..|+++.+.+..+..|+.+ ++
T Consensus 714 ~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlw-n~------------ 780 (963)
T PLN02563 714 SIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTW-RL------------ 780 (963)
T ss_pred cccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHH-HH------------
Confidence 99999999999999999999999999999999999999999998888666655331 11
Q ss_pred hHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Q psy5309 1322 NFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARD 1401 (1618)
Q Consensus 1322 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n 1401 (1618)
+..... ....+.+. .. ......|+|++++++.++++|+++|++|+|+.|++++ |+|++..
T Consensus 781 --~~~~~~------------~~~~~~~~-~~---~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~l-mef~n~l- 840 (963)
T PLN02563 781 --VVGAPL------------PDGSFRDG-TV---VTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAM-MEFTNAA- 840 (963)
T ss_pred --HHHhhh------------cccccCcc-cc---ccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHH-
Confidence 100000 00001100 00 0112468999999999999999999999999999998 4887421
Q ss_pred HHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhh
Q psy5309 1402 KYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA 1481 (1618)
Q Consensus 1402 ~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 1481 (1618)
.+ | +
T Consensus 841 -----~~-------------------------------------------~-------~--------------------- 844 (963)
T PLN02563 841 -----YK-------------------------------------------W-------D--------------------- 844 (963)
T ss_pred -----hC-------------------------------------------c-------h---------------------
Confidence 11 0 0
Q ss_pred hhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCCceEeccCCCCC
Q psy5309 1482 AEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGG 1532 (1618)
Q Consensus 1482 ~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~sv~~~~~p~~~ 1532 (1618)
..+.++++.+++|||||+||+|||+|+.|+..+||+.++||+.+
T Consensus 845 -------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~~sv~~~~WP~~d 888 (963)
T PLN02563 845 -------KVPREAIEPFVLLLSPYAPHLAEELWFRLGHSNSLAYEPWPEAN 888 (963)
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCCCeeeeCCCCCCC
Confidence 01237899999999999999999999999877899999999976
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-25 Score=278.14 Aligned_cols=213 Identities=24% Similarity=0.293 Sum_probs=170.4
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV 1285 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~ 1285 (1618)
+..|+|+..+|...|++.+.+. +..+|+.+++|||++++|+|||||+||+|+|.+++++||+|++|||+++.+++.
T Consensus 258 ~~~G~D~~~~h~~~~~a~~~a~----~~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~ 333 (511)
T PRK11893 258 HLIGKDILRFHAVYWPAFLMAA----GLPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFG 333 (511)
T ss_pred eEecccccccchhHHHHHHHhC----CCCCCCEEEeeccEEECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 5679999999999998776654 346779999999999999999999999999999999999999999999998999
Q ss_pred cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHH
Q psy5309 1286 EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1365 (1618)
Q Consensus 1286 ~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 1365 (1618)
+|++||++.+.+.. |.. +.+.| +|+ ++|+..+. .+.+++. .+........|+|+
T Consensus 334 ~d~~Fs~~~~~~~~---~~~-l~~~l---~n~---~~r~~~~~--------------~~~~~~~--~~~~~~~~~~d~~l 387 (511)
T PRK11893 334 QDGDFSREAFINRI---NAD-LANDL---GNL---AQRTLSMI--------------AKNFDGK--VPEPGALTEADEAL 387 (511)
T ss_pred cCCCCCHHHHHHHH---HHH-HHHHH---HHH---HHHHHHHH--------------HHhcCCC--CCCCcccchhhHHH
Confidence 99999999765532 222 11111 222 44443332 1222221 12122345679999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchhh
Q psy5309 1366 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPHV 1436 (1618)
Q Consensus 1366 l~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~~ 1436 (1618)
+++++++.+.+.++|++|+|+.|++.++ +|+...|.|++.++||... ..++++++++.++.+|+||||++
T Consensus 388 ~~~l~~~~~~v~~~~~~~~~~~a~~~l~-~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ 466 (511)
T PRK11893 388 LEAAAALLERVRAAMDNLAFDKALEAIL-ALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPEL 466 (511)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchH
Confidence 9999999999999999999999999985 9999999999999998642 12678999999999999999999
Q ss_pred HHHHHHHhccccc
Q psy5309 1437 AEHVEMNLKIKET 1449 (1618)
Q Consensus 1437 a~~i~~~L~~~~~ 1449 (1618)
|++|+++||.+..
T Consensus 467 ae~i~~~L~~~~~ 479 (511)
T PRK11893 467 AAKILDQLGVEED 479 (511)
T ss_pred HHHHHHHhCCCcc
Confidence 9999999997544
|
|
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-24 Score=247.02 Aligned_cols=167 Identities=28% Similarity=0.344 Sum_probs=121.7
Q ss_pred EEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCC---CCCCCccccCCCccch
Q psy5309 911 YVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDE---PEMWPRGIRANGHLLL 987 (1618)
Q Consensus 911 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~---~~~wp~~lr~~g~~~~ 987 (1618)
-|||+..++++++.+++.+++++..... +.....++++.+|++|..+.. ++ +++|+.+ ||+||+||
T Consensus 127 ~VYFdv~~~~~YG~Ls~~~~~~l~~~~~--------~~~~~~K~~p~DFaLWK~~~~--~e~~w~spwG~G-RPGWHiEC 195 (300)
T PF01406_consen 127 SVYFDVSKFPDYGKLSNQDLEDLEAGAR--------VEVDYEKRNPRDFALWKAAKP--GEPSWDSPWGKG-RPGWHIEC 195 (300)
T ss_dssp EEEE-CCGSTTTTTTTT-SHHHHHHCHH--------HTT-TTSSSTT-EEEEEE--T--TS--B--TTSSE-EE-HHHHH
T ss_pred cEEEeeccccccccccccchhhHHhhhh--------cccccccCCCcceeeeecccc--cCCcccCCCccC-cCceeeeh
Confidence 3778888899999999988776654321 122256788889988765432 33 3677766 99999999
Q ss_pred hhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhh
Q psy5309 988 NSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1065 (1618)
Q Consensus 988 ~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~ 1065 (1618)
.. ++...| .+|||+||.|++||||+||++|+.++.+ .+|.+.++++|+|..+|+|||||+||++++.+++++
T Consensus 196 sa---m~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g---~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~ 269 (300)
T PF01406_consen 196 SA---MSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATG---KPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKK 269 (300)
T ss_dssp HH---HHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHS---S-SEEEEEEE--EEETTCE--TTTT---BHHHHHTT
T ss_pred HH---HHHHHcCCCceEEccccccCCCCccchHHHHHHhhC---chHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhc
Confidence 43 455666 7999999999999999999999999986 457899999999999999999999999999999999
Q ss_pred cCccceEEeecccCcccccccccHHHHHHH
Q psy5309 1066 FSADGMRLCLADSGDSVEDANFVESMADAG 1095 (1618)
Q Consensus 1066 yGaDalRl~l~~~~~~~~D~~fs~~~~~~~ 1095 (1618)
|+++++||+++++ .+.++++|+++.++++
T Consensus 270 ~~~~~lR~~~l~~-hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 270 YSPDALRLFLLST-HYRKPLNFSEENLEEA 298 (300)
T ss_dssp S-HHHHHHHHHTS--TTS-EEE-HHHHHHH
T ss_pred CCHHHHHHHHhcC-CCCCccccCHHHHHHh
Confidence 9999999999977 8999999999987664
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >KOG0435|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-22 Score=234.71 Aligned_cols=415 Identities=17% Similarity=0.159 Sum_probs=237.3
Q ss_pred eeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHHHHH
Q psy5309 46 FTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRFNRL 123 (1618)
Q Consensus 46 ~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~~rm 123 (1618)
||+.|||||||.+||||.+.| ++.|..+| .++++|.|..|+.+ +-|.+ |.|+++.-
T Consensus 60 YiLsMFPYPSG~LHiGHvRVY----------TIsD~laRf~rm~GynVihPMGWDaFGLP----AENAAier-------- 117 (876)
T KOG0435|consen 60 YILSMFPYPSGALHIGHVRVY----------TISDILARFYRMKGYNVIHPMGWDAFGLP----AENAAIER-------- 117 (876)
T ss_pred eEEEecCCCCCcccccceEEE----------EehHHHHHHHHhcCceeecCCcccccCCc----hhhHHHhc--------
Confidence 999999999999999998888 66666666 56999999999977 66666 66655543
Q ss_pred cCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHH
Q psy5309 124 KGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQI 203 (1618)
Q Consensus 124 ~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~ 203 (1618)
|.|..-..++..+ + +++.
T Consensus 118 ---------gv~P~sWT~~NI~-~----------------------------------------------------Mk~Q 135 (876)
T KOG0435|consen 118 ---------GVHPASWTINNIA-K----------------------------------------------------MKQQ 135 (876)
T ss_pred ---------CCCchhhhHHHHH-H----------------------------------------------------HHHH
Confidence 4554433333322 1 2245
Q ss_pred HHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc------ccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 204 MQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD------WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 204 ~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D------w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
|+++|++-||-||..+|.+-+.++.++++-+|-+-|+.+. |+.--.|+-.|...++ =.+-+..|.+.+.
T Consensus 136 l~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~-----~G~SWRSGA~VEk 210 (876)
T KOG0435|consen 136 LKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDA-----DGCSWRSGAKVEK 210 (876)
T ss_pred HHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcc-----cCccccccchhhH
Confidence 6788999999999999999999999999999999997654 8887777765522210 0011111222222
Q ss_pred ceeEEEecCCCCcccchh------------hccC--CCCCCeeEEEEEEeeccCCc--cccccCC------CCCcEEEEe
Q psy5309 278 KRYTVFSPRDNQPCMDHD------------RASG--EGVGPQEYTLIKMRLVKPYP--AKLCCLD------SKPVFLVAA 335 (1618)
Q Consensus 278 ~~~v~w~p~~~t~lsd~E------------v~~~--~~~~~~~y~~~~~~~~~~~~--~~~~~~~------~~~~~l~i~ 335 (1618)
+..-.|..+. |+.|+.= |..- --++.+...-+.|++.++-. ..+-... ..-.+++++
T Consensus 211 K~LrQWfikt-taYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~ 289 (876)
T KOG0435|consen 211 KKLRQWFIKT-TAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLA 289 (876)
T ss_pred HHHHHHHhhh-hHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEc
Confidence 2222233221 2222100 0000 00111222223333332110 0000000 011345554
Q ss_pred ecCcc-ccccCceEEeC----CCC----CceeecccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCC---c
Q psy5309 336 TLRPE-TMYGQTNAWVR----PDM----AYIALSCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATG---E 402 (1618)
Q Consensus 336 TTrPe-Tl~g~~avaV~----P~~----~Y~~~~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~---~ 402 (1618)
-..+= ...+..+=+.. |+- ....++|+.|+.+||+... +.. -+|||++.-.|+|+-.|.+.... .
T Consensus 290 ~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~--~~gt~a~m~~P~hd~rD~ela~~~~~~ 367 (876)
T KOG0435|consen 290 PSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLD--PYGTGAVMGAPGHDQRDKELAQKIGIK 367 (876)
T ss_pred CCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechhcc--CCCcceeeeccCcccchhHHHhcccce
Confidence 44332 11110010110 111 1334567799999997754 332 28999999999999888876643 1
Q ss_pred EEEecccc-------ccccccCC-CchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccc
Q psy5309 403 VFVCTERS-------ARNMAYQG-FTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNT 474 (1618)
Q Consensus 403 ~~i~~~~~-------~~~~~~~g-~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~ 474 (1618)
..+|.+.. .....+.| +.+..|...+++...+.++. |.++
T Consensus 368 ~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g--~~~v------------------------------ 415 (876)
T KOG0435|consen 368 WIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVG--GYVV------------------------------ 415 (876)
T ss_pred eEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCC--ccee------------------------------
Confidence 12222211 11123344 33444555566555555544 1111
Q ss_pred cchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccC-cccccC-------------
Q psy5309 475 YHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQG-GTFRGE------------- 540 (1618)
Q Consensus 475 ~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~-~~~~g~------------- 540 (1618)
-..|+||.|||||+||+||| ++.+-.+.++....--||..|+. ..|++.
T Consensus 416 ------------s~kLkDWLiSRQRyWGTPIP-----ivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~ 478 (876)
T KOG0435|consen 416 ------------SYKLKDWLISRQRYWGTPIP-----IVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNV 478 (876)
T ss_pred ------------cchhhhhhhhhhhccCCCcc-----eEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheec
Confidence 12378999999999999999 66665555554433344444441 234433
Q ss_pred -------CCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhh
Q psy5309 541 -------NGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIES 613 (1618)
Q Consensus 541 -------~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~ 613 (1618)
.+..++-|+++-.+..|+|+.|... .+.-.|-+ +.--.+|+|+|..++|.
T Consensus 479 ~cP~cg~pAkRETDTMDTFvDSsWYYlRylDp---kN~e~~~d-----~a~a~k~MPVDvYIGG~--------------- 535 (876)
T KOG0435|consen 479 DCPRCGEPAKRETDTMDTFVDSSWYYLRYLDP---KNPEEPFD-----KAKAKKNMPVDVYIGGK--------------- 535 (876)
T ss_pred cCccCCCcccccccccchhhccceeeEeecCC---CCcccccc-----hhhhhccCceeEEeccH---------------
Confidence 3334577888888999999999872 11111111 12246999999999997
Q ss_pred ccchhhhhhhhhhhhhccCC
Q psy5309 614 LSDSTIYMAYYTVAHLLQGG 633 (1618)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~ 633 (1618)
+|+|+||+=..
T Consensus 536 ---------EHAvlHLlYaR 546 (876)
T KOG0435|consen 536 ---------EHAVLHLLYAR 546 (876)
T ss_pred ---------HHHHHHHHHHH
Confidence 79999998654
|
|
| >KOG1247|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-20 Score=209.63 Aligned_cols=217 Identities=21% Similarity=0.231 Sum_probs=181.5
Q ss_pred HHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHH-hcCcceeeeehhcc
Q psy5309 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVK-KFSADGMRLCLADS 1281 (1618)
Q Consensus 1203 ei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~-~yGaD~lRl~l~~~ 1281 (1618)
+++|++|||+..+|...||++.... .+.....+++.+..++.-+..|+|||+|-+|...++.+ ..++|++||||++.
T Consensus 297 ~LyqFmgKDNVpFHtviFP~s~lgt--~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~ 374 (567)
T KOG1247|consen 297 ELYQFMGKDNVPFHTVIFPCSQLGT--EENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYI 374 (567)
T ss_pred hHHHHhccCCCcceeeecchhhhcC--CCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhc
Confidence 5799999999999999999865542 23345568889999998899999999999999999887 48999999999999
Q ss_pred CCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcc
Q psy5309 1282 GDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFN 1361 (1618)
Q Consensus 1282 ~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1361 (1618)
+|+++|..||++. ++.+.|++ +|+|+||| +||+++++. ..+++..+ .. .+..-
T Consensus 375 RPEssDs~Fsw~d---f~~k~nse----Ll~NLGNF---vNR~l~fv~--------------~~~~g~Vp--~~-~~~~~ 427 (567)
T KOG1247|consen 375 RPESSDSAFSWDD---FVLKVNSE----LLNNLGNF---VNRVLKFVA--------------AKYNGVVP--EM-ELTSG 427 (567)
T ss_pred cCcccCCcCcHHH---HHHHhhHH----HHHHHHHH---HHHHHHHHH--------------HhhCCccc--ce-eecCC
Confidence 9999999999985 55577766 57888998 788776643 56666432 22 33344
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchh---------HHHHHHHHHHHHhhcCc
Q psy5309 1362 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHR---------TLVLRFVEVQALLLCPV 1432 (1618)
Q Consensus 1362 D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~---------~~~l~~~~~~a~ll~P~ 1432 (1618)
|+.+++.++++..+..++||.-..++|++.++ ++...+|.|++..++|+.... -++++++.+++.||+|+
T Consensus 428 ~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m-~is~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~ 506 (567)
T KOG1247|consen 428 DKKLLEDVNELLAKYVAAMEKVKLREALKTAM-EISRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPY 506 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhccc
Confidence 89999999999999999999999999999984 999999999998876665221 46899999999999999
Q ss_pred chhhHHHHHHHhccccc
Q psy5309 1433 CPHVAEHVEMNLKIKET 1449 (1618)
Q Consensus 1433 ~P~~a~~i~~~L~~~~~ 1449 (1618)
||.++..|..+|++...
T Consensus 507 mP~~s~~I~kqlnlp~~ 523 (567)
T KOG1247|consen 507 MPTTSAEILKQLNLPET 523 (567)
T ss_pred cccchHHHHHHhCCccc
Confidence 99999999999998854
|
|
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=213.56 Aligned_cols=139 Identities=10% Similarity=0.003 Sum_probs=114.6
Q ss_pred cCcEEEEccceeeCCccceeccCcccChH-----------------------HHHhhcCccceEEeecccCccccccccc
Q psy5309 1032 WPRGIRANGHLLLNSAKMSKSEGNFLTLT-----------------------EAVKKFSADGMRLCLADSGDSVEDANFV 1088 (1618)
Q Consensus 1032 ~pk~v~~hG~vl~~G~KMSKS~GNvV~p~-----------------------eii~~yGaDalRl~l~~~~~~~~D~~fs 1088 (1618)
+|+++.+|||.++.|.|||||+||+|+|. ++++.+|.|++||++++.. ..+|.+|+
T Consensus 356 ~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd 434 (566)
T TIGR00456 356 KKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVFD 434 (566)
T ss_pred CCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCceec
Confidence 47899999999999999999999999998 7888899999999999885 78999999
Q ss_pred HHHHHH----HHhhHHHHHHHHHHHHHhccc--CCCC----CCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy5309 1089 ESMADA----GILRLYTFIEWVKEILATQST--LRTG----SQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFF 1158 (1618)
Q Consensus 1089 ~~~~~~----~~~kl~N~~~~l~~~l~~~~~--~~~~----~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~ 1158 (1618)
++.+.+ ...-+.|...|+.+++.+... .+.. ......++.++..+..+...+.+++++++++.++.. ++
T Consensus 435 ~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~-l~ 513 (566)
T TIGR00456 435 WDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNY-LY 513 (566)
T ss_pred HHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-HH
Confidence 987533 234677888888888876532 1110 111344677888999999999999999999999998 79
Q ss_pred HHHHHHHHHHHHhc
Q psy5309 1159 ELQAARDKYRELTA 1172 (1618)
Q Consensus 1159 ~l~~~~n~Yi~~~k 1172 (1618)
++....|.|++.+.
T Consensus 514 ~La~~~N~yy~~~~ 527 (566)
T TIGR00456 514 ELASLFSSFYKACP 527 (566)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999998763
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=208.62 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=98.5
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
..+++.|.+++|||||+|||||+|+.+++|+++|++++.||+|.+++|+|++|.||...+.+..+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~--------------- 173 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLEL--------------- 173 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHH---------------
Confidence 45689999999999999999999999999999999999999999999999999999887765210
Q ss_pred CCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc-c
Q psy5309 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD-W 244 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D-w 244 (1618)
.+..+++.+.+.+++++++||+.+| |
T Consensus 174 -----------------------------------------------------~~~~~~~~~~~~~~~~l~~LgI~~D~~ 200 (507)
T PRK01611 174 -----------------------------------------------------LWRKAVDISLDEIKEDLDRLGVHFDVW 200 (507)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHHHHHcCCeeeEE
Confidence 0135567778899999999999998 4
Q ss_pred cCceeecCCChhhhHHHHHHHHHHHhcCccc
Q psy5309 245 RRTFITTDSNPFFDSFVRWQFMRLRDRHKIK 275 (1618)
Q Consensus 245 ~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy 275 (1618)
.++- + ..+...+.+++..|.++|++|
T Consensus 201 ~~es---~--~~~~~~~~~~~~~L~~~G~~y 226 (507)
T PRK01611 201 FSES---E--LYYNGKVDEVVEDLKEKGLLY 226 (507)
T ss_pred eecC---c--chhcchHHHHHHHHHHCCCEE
Confidence 3322 2 335568999999999999998
|
|
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-17 Score=178.05 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=107.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchh
Q psy5309 1357 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA-ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPH 1435 (1618)
Q Consensus 1357 ~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~-~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~ 1435 (1618)
.+...|+|+++++++++++++++|++|+|+.|++.++ .|+. .+++|++.+|
T Consensus 44 ~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~-~f~~~~~~~Y~e~~K--------------------------- 95 (183)
T cd07961 44 SLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL-EFIDELTNWYIRRNR--------------------------- 95 (183)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHhhhhHhhhch---------------------------
Confidence 4567899999999999999999999999999999985 8775 4577775554
Q ss_pred hHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q psy5309 1436 VAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQ 1515 (1618)
Q Consensus 1436 ~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~ 1515 (1618)
+++|+...+..+ ..++.++.+++..++++||||+||+|||+|+
T Consensus 96 ----------------------------~~~~~~~~~~~~---------~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~ 138 (183)
T cd07961 96 ----------------------------KRFWGEEGDDDK---------LAAYATLYEVLLTLSRLMAPFTPFITEEIYQ 138 (183)
T ss_pred ----------------------------HHhcCCCCchhH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444433211111 1467789999999999999999999999999
Q ss_pred HcCC-----CCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHH
Q psy5309 1516 LLGK-----KGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFR 1553 (1618)
Q Consensus 1516 ~l~~-----~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R 1553 (1618)
++++ .+||+.++||+++. .|+.+++.++.+++++.++|
T Consensus 139 ~l~~~~~~~~~si~~~~wP~~~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 139 NLRRELGDAPESVHLLDWPEVDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred HhhhhcCCCCCceeeecCCCCcccccCHHHHHHHHHHHHHHHhhC
Confidence 9874 37999999999764 48888899999999888876
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=166.86 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=104.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcch
Q psy5309 1357 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCP 1434 (1618)
Q Consensus 1357 ~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P 1434 (1618)
.....|+|++++++.+++++.++|++|+|+.|++.++ .|+. ++|.|++..+|
T Consensus 41 ~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~-~f~~~~l~n~Yi~~~k~------------------------- 94 (180)
T cd07960 41 ELLELDRYALHRLNELIKEVREAYENYEFHKVYQALN-NFCTVDLSAFYLDIIKD------------------------- 94 (180)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHhccc-------------------------
Confidence 4567899999999999999999999999999999985 8884 88999987764
Q ss_pred hhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhh-hhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHH
Q psy5309 1435 HVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQ-AARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1513 (1618)
Q Consensus 1435 ~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEei 1513 (1618)
+++++. ++..+. .+++++..++..++++|+||+||+|||+
T Consensus 95 ------------------------------~~~~~~~~~~~~~---------~~~~~l~~~l~~l~~lL~P~~P~~aeel 135 (180)
T cd07960 95 ------------------------------RLYCDAKDSLERR---------SAQTVLYHILDALLKLLAPILPFTAEEV 135 (180)
T ss_pred ------------------------------ceecCCCCCHHHH---------HHHHHHHHHHHHHHHHHcchhhhhHHHH
Confidence 222211 011111 3556788999999999999999999999
Q ss_pred HHHcCC---CCceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1514 YQLLGK---KGSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQV 1556 (1618)
Q Consensus 1514 w~~l~~---~~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~ 1556 (1618)
|+.++. .+||+.++||+.+. .|++++..++.+++ +|+++
T Consensus 136 ~~~l~~~~~~~~v~~~~wP~~~~~~~~~~~~~~~~~~~~----i~~~~ 179 (180)
T cd07960 136 WEHLPGEKKEESVFLEDWPELPEEWKDEELEEKWEKLLA----LRDEV 179 (180)
T ss_pred HHhccccCCCCCeeccCCCCCcccccCHHHHHHHHHHHH----HHHhh
Confidence 999975 47999999999763 47788887766666 77765
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=178.11 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=91.3
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCC--------hhhHHHHHHHHHHHHhcCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTG--------MPIKACADKLKREMESFGFP 158 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G--------~pIe~~a~k~~~~~~~~gi~ 158 (1618)
+.+|+|+.|++ |||.+||||++..+..|+++||+|++|++|.+++|+|+|| +|.+ .++ ..|.+
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~------~~G~p 88 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQ------YIGMP 88 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHH------hcCcc
Confidence 46799999985 9999999999999999999999999999999999999994 4433 111 12333
Q ss_pred CCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHc
Q psy5309 159 PQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSI 238 (1618)
Q Consensus 159 ~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~l 238 (1618)
. .. ++ ..+-.+..|++.+.+.+++.|.+|
T Consensus 89 i-----------------------------~~------------------ip----~p~g~~~~~~d~~~~~f~~~l~~l 117 (353)
T cd00674 89 L-----------------------------SS------------------VP----DPFGCCESYAEHFERPFEESLEKL 117 (353)
T ss_pred c-----------------------------hh------------------ch----hhcCCCHHHHHHHHHHHHHHHHHc
Confidence 1 00 00 011113478888999999999999
Q ss_pred CCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 239 GIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 239 Gi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
|+++|+- .+++. ...-.+.+.++..|.+.+.|..
T Consensus 118 gi~~d~~---~~T~~-y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 118 GIEVEFI---SQSQM-YKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred CCeeeee---ecCCc-hhhchHHHHHHHHHHHCChHHH
Confidence 9999943 33331 2233567777888888887754
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-16 Score=195.04 Aligned_cols=135 Identities=30% Similarity=0.432 Sum_probs=111.7
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ 169 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~ 169 (1618)
|+|+.|+|||||+|||||+.+++.+|+++||+||+|++|++..|+|+||++|+..|++. |+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~-------g~------------ 61 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ-------GI------------ 61 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT-------TS------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc-------CC------------
Confidence 68999999999999999999999999999999999999999999999999999998762 22
Q ss_pred CCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCcee
Q psy5309 170 TDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249 (1618)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~ 249 (1618)
+|.++++++.+.+++.++++||++|. -..
T Consensus 62 -------------------------------------------------~p~~~~~~~~~~~~~~~~~~~I~~D~--F~r 90 (391)
T PF09334_consen 62 -------------------------------------------------DPEEFCDKYSAKFKELLEALNISYDR--FIR 90 (391)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHTT---SE--EEE
T ss_pred -------------------------------------------------CHHHHHHHHHHHHHHHHHHcCCCCcc--eeC
Confidence 14466777888899999999999982 122
Q ss_pred ecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhh
Q psy5309 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDR 296 (1618)
Q Consensus 250 T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev 296 (1618)
|++ +.+.++|+++|.+|+++|+||++.....||+.|++.++|.++
T Consensus 91 Tt~--~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v 135 (391)
T PF09334_consen 91 TTD--DRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFV 135 (391)
T ss_dssp TTS--HHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGE
T ss_pred CCC--HHHHHHHHHHHHHHHhcCceeecccceeEecCcCccccccee
Confidence 555 789999999999999999999999999999999887776553
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-16 Score=174.85 Aligned_cols=99 Identities=33% Similarity=0.360 Sum_probs=87.2
Q ss_pred CccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChH
Q psy5309 983 GHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLT 1060 (1618)
Q Consensus 983 g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~ 1060 (1618)
||+||.. ++..+| ++|+|.+|.|++||||+|++++++++++. ++++.+++.|++..+|+|||||+||+|+|.
T Consensus 113 Wh~ec~a---m~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~---~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~ 186 (213)
T cd00672 113 WHIECSA---MAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGK---PFARYWLHTGHLTIDGEKMSKSLGNFITVR 186 (213)
T ss_pred hhHHHHH---HHHHHcCCCccEEeecCCCCcChHHHHHHHHHHHhCC---CCCcEEEEEEEEeccCcchhhcCCCccCHH
Confidence 6999943 455666 78999999999999999999999999875 467777778888899999999999999999
Q ss_pred HHHhhcCccceEEeecccCccccccccc
Q psy5309 1061 EAVKKFSADGMRLCLADSGDSVEDANFV 1088 (1618)
Q Consensus 1061 eii~~yGaDalRl~l~~~~~~~~D~~fs 1088 (1618)
|++++||+|++|||+++. ++.++++|+
T Consensus 187 dll~~~~~da~R~~~l~~-~~~~~l~f~ 213 (213)
T cd00672 187 DALKKYDPEVLRLALLSS-HYRSPLDFS 213 (213)
T ss_pred HHHHHcCHHHHHHHHHhC-CcCCCCCCC
Confidence 999999999999999977 688888874
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=151.78 Aligned_cols=127 Identities=27% Similarity=0.432 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-H-HHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHH
Q psy5309 1362 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ-A-ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEH 1439 (1618)
Q Consensus 1362 D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~-~-~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~ 1439 (1618)
|+|++++++++++++.++|++|+|+.|++.++ .|+ + ++|+|++.++|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~-~f~~~~~~n~Yl~~~k~------------------------------ 49 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIM-NFIWNDLSNWYLELIKP------------------------------ 49 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-HHHHHHHCHHHHHHHHH------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHhccc------------------------------
Confidence 89999999999999999999999999999985 873 3 78999987763
Q ss_pred HHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHc--
Q psy5309 1440 VEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL-- 1517 (1618)
Q Consensus 1440 i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l-- 1517 (1618)
++++..++..+ ..+.++..++..++++|+||+||+|||+|++|
T Consensus 50 -------------------------~~~~~~~~~~~----------~~~~~l~~~l~~~~~ll~P~~P~~aEeiw~~l~~ 94 (153)
T PF08264_consen 50 -------------------------WLYCKDDDESR----------EAQYTLYEILKILLILLSPFMPFIAEEIWQRLKS 94 (153)
T ss_dssp -------------------------HHCTTTTCHHH----------HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCTT
T ss_pred -------------------------chhcccchhHH----------HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhhh
Confidence 22222111111 14567889999999999999999999999654
Q ss_pred ---CCCCceEeccCCC-CCCCCHHH-HHHHHHHHHHHHHHHH
Q psy5309 1518 ---GKKGSIVKARWPE-GGPIDDIL-VRSSSYLMEAAHAFRL 1554 (1618)
Q Consensus 1518 ---~~~~sv~~~~~p~-~~~~~~~l-~~~~~~~~~~i~~~R~ 1554 (1618)
+.++||+.+.||. ....+..+ ++.++.+.+++..+|+
T Consensus 95 ~~~~~~~si~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~i~~ 136 (153)
T PF08264_consen 95 EKLGEKSSIFLEKWPEDPEFIDEELEEEAFEILKEVVQVIRK 136 (153)
T ss_dssp HHTTSSSSGGGS-----GGGGHHHH-HHHHHHHHHHHHHHHH
T ss_pred ccCCCCCeeeeCCCCCChhhhcHHHHHHHHHHHHHHHHHHHH
Confidence 5578999999997 22233334 4555665555555554
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=179.87 Aligned_cols=149 Identities=28% Similarity=0.312 Sum_probs=113.1
Q ss_pred CCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCc
Q psy5309 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDA 1288 (1618)
Q Consensus 1209 gkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~ 1288 (1618)
|.|+...|..-....+.+..+ .+|++..+.+||+..+|+|||||+||+|+|.+++++||+|++|||++++ .+.+++
T Consensus 227 G~DlifpHh~neiaqs~a~~g---~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~-~~~~~~ 302 (463)
T PRK00260 227 GADLIFPHHENEIAQSEAATG---KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSA-HYRSPL 302 (463)
T ss_pred ccccCCCchHhHHHHHHHhcC---CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhC-CCCCCC
Confidence 667776666555544444332 3344444445666669999999999999999999999999999999985 778999
Q ss_pred ccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHH
Q psy5309 1289 NFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1368 (1618)
Q Consensus 1289 ~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~ 1368 (1618)
+||++.+.+..+.++. ++++++++. . ...|+|++++
T Consensus 303 ~fs~~~l~~a~~~~~r------------------------------l~~~~~~~~----~----------~~~d~~~~~~ 338 (463)
T PRK00260 303 NFSEEALEQAKKALER------------------------------LYNALAETA----L----------GEDDEALLAE 338 (463)
T ss_pred ccCHHHHHHHHHHHHH------------------------------HHHHHHHhh----h----------ccchhhHHHH
Confidence 9999988887666652 222222221 0 1357899999
Q ss_pred HHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5309 1369 MNLKIKETEDHY-TKMLFKEALRTGFFELQAARDKYREL 1406 (1618)
Q Consensus 1369 l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~~n~Y~~~ 1406 (1618)
++.+.+++.++| |+|++++|+..++ +|+...|.|++.
T Consensus 339 l~~~~~~~~~al~ddln~~~Al~~l~-~lv~~~n~~~~~ 376 (463)
T PRK00260 339 LEEFKERFIEAMDDDFNTPEALAVLF-ELAREINRALET 376 (463)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHHHHHhhc
Confidence 999999999999 5999999999985 999888888754
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=184.25 Aligned_cols=139 Identities=23% Similarity=0.249 Sum_probs=105.7
Q ss_pred CcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhccc
Q psy5309 1234 MWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLAD 1313 (1618)
Q Consensus 1234 ~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n 1313 (1618)
.|.+....+|||..+|+|||||+||+|+|.+++++||+|++|||+++. ++.+|++||++.+.+..+..+. +.+.++
T Consensus 298 ~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~~~--l~n~~~- 373 (651)
T PTZ00399 298 QWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKV--FFNFFA- 373 (651)
T ss_pred CCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHHHH--HHHHHH-
Confidence 344555555998889999999999999999999999999999999977 8889999999988876665542 122211
Q ss_pred CCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHH-hcccHHHHHHHH
Q psy5309 1314 SGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTG 1392 (1618)
Q Consensus 1314 ~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~-e~~~f~~a~~~i 1392 (1618)
++.+. +.+. . .+........|++++..++.+.+.+.++| ++|+++.|+..+
T Consensus 374 ---------rl~s~--------------l~~~-~----~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L 425 (651)
T PTZ00399 374 ---------NVKIK--------------LRES-E----LTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQAL 425 (651)
T ss_pred ---------HHHHH--------------Hhhc-c----ccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11110 0000 0 00111234578999999999999999999 889999999998
Q ss_pred HHHHHHHHHHHHH
Q psy5309 1393 FFELQAARDKYRE 1405 (1618)
Q Consensus 1393 ~~~f~~~~n~Y~~ 1405 (1618)
+ +|+...|.|++
T Consensus 426 ~-eLv~~~N~yi~ 437 (651)
T PTZ00399 426 Q-KLISATNTYLN 437 (651)
T ss_pred H-HHHHHHHHHHh
Confidence 5 99999999996
|
|
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=162.23 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=101.2
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+.+|.+.+|||||+|||||+|+.+++|+++|++++.|++|.+..|+|++|.||+..+++...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~------------------ 62 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK------------------ 62 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH------------------
Confidence 36899999999999999999999999999999999999999999999999999988864210
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc-ccCc
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD-WRRT 247 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D-w~~~ 247 (1618)
+.++++.+.+.+.+++++||+.+| |.++
T Consensus 63 ---------------------------------------------------~~~~~~~~~~~~~~~~~~L~i~~d~~~~e 91 (212)
T cd00671 63 ---------------------------------------------------WRKLVEESIKADLETYGRLDVRFDVWFGE 91 (212)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHhCCcCceecch
Confidence 235566777888999999999998 5433
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEec
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSP 285 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p 285 (1618)
- + +...+..++..|.++|++|+..--+.+|+
T Consensus 92 s---~----~~~~~~~~i~~L~~~g~~~~~~g~~~~~~ 122 (212)
T cd00671 92 S---S----YLGLMGKVVELLEELGLLYEEDGALWLDL 122 (212)
T ss_pred h---h----hhhHHHHHHHHHHHCCCEEEeCCcEEEec
Confidence 2 2 36689999999999999998765555554
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=173.06 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=50.6
Q ss_pred CcEEEEccceeeC-CccceeccCcccChHHHHhhcCccceEEeecccCcccccccccH
Q psy5309 1033 PRGIRANGHLLLN-SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE 1089 (1618)
Q Consensus 1033 pk~v~~hG~vl~~-G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~ 1089 (1618)
|.. ++|||++.+ |+|||||+||+|+|.++++.||+|++|||++...++.+|++|+.
T Consensus 265 P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 265 PEP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred Cee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH
Confidence 444 789999966 99999999999999999999999999999887778899999986
|
|
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-14 Score=176.19 Aligned_cols=53 Identities=28% Similarity=0.434 Sum_probs=48.6
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccc
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1087 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~f 1087 (1618)
.+++||+++ .+|+|||||+||+|+|.+++++||+|++|||+++.+++++|.+|
T Consensus 329 ~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 329 EVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 345688888 79999999999999999999999999999999999899999876
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-13 Score=169.19 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=117.3
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCC--CCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPP--QFPSE 164 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~--~~~e~ 164 (1618)
.++++|.+.+|||||||||||+||.++||+++|.+++.||+|...+++++.|.||..++-.+++. +.+. ..++
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~----~~e~~~~~~~- 190 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKR----GREALGLTPE- 190 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHh----ccccccCCCC-
Confidence 57899999999999999999999999999999999999999999999999999999998876432 2110 0010
Q ss_pred CCCCCCCCCCCCchhcccccCcchHHHHHhhhhHH------HHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHc
Q psy5309 165 DTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKY------QWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSI 238 (1618)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~------~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~l 238 (1618)
...|.|....++++...+.. ..++++.+...+++. +.- +..++..++.+++++.++
T Consensus 191 ---------------~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~lw--~~~v~~~l~~~k~~l~~l 252 (577)
T COG0018 191 ---------------PDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-ELW--RKFVDLSLEGIKETLDRL 252 (577)
T ss_pred ---------------cchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHH-HHH--HHHHHHHHHHHHHHHHHh
Confidence 12355555555555444422 123334444333332 221 246788899999999999
Q ss_pred CCccc-c--cCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 239 GIHVD-W--RRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 239 Gi~~D-w--~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
|+.+| | .++.. |+..+..++..|.++|++|+
T Consensus 253 ~V~fD~~~~E~e~~-------~~~~~~~vv~~L~~~~~~~e 286 (577)
T COG0018 253 GVKFDVYDSEGESF-------YNGKVEKVVEDLEEKGLLYE 286 (577)
T ss_pred Ccccceeeccchhh-------hcccHHHHHHHHHhcCCEee
Confidence 99999 4 34432 44578999999999999998
|
|
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=154.18 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=93.8
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
.-++++.-|.|| |++||||+|+++..|+++||+|++||+|.+..|+|+||.+|+..|++ .|++
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~-------~G~~-------- 71 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR-------DGVD-------- 71 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHH-------cCCC--------
Confidence 456888888888 99999999999999999999999999999999999999999988864 1221
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCC-ccccc
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGI-HVDWR 245 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi-~~Dw~ 245 (1618)
+.++++++.+.+.+++++||+ ..|
T Consensus 72 -----------------------------------------------------~~e~a~~~~~~f~~d~~~Lni~~~~-- 96 (384)
T PRK12418 72 -----------------------------------------------------WRDLAEREIALFREDMEALRVLPPR-- 96 (384)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHHHHhCCCCCC--
Confidence 235566677788899999996 444
Q ss_pred CceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 246 RTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 246 ~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
....|++ +...++..+.+|.++|++|+.
T Consensus 97 ~~~raTe----~i~~~~~~i~~L~~kG~aY~~ 124 (384)
T PRK12418 97 DYVGAVE----SIPEVVELVEKLLASGAAYVV 124 (384)
T ss_pred ccccCCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 2333444 477899999999999999974
|
|
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-12 Score=127.39 Aligned_cols=111 Identities=36% Similarity=0.519 Sum_probs=92.0
Q ss_pred HHhhHHHHHHHHHHHHHhc-c-cCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5309 1095 GILRLYTFIEWVKEILATQ-S-TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA 1172 (1618)
Q Consensus 1095 ~~~kl~N~~~~l~~~l~~~-~-~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k 1172 (1618)
.++.++|+++++.+++.+. + ..+. ......|+|++++++.++++++++|++|+|++|++.+++++.+.+|+|++..+
T Consensus 5 ~~~~~~~~l~R~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~~ 83 (117)
T cd07959 5 EANSAILRLERFYELAEELIETEGEL-EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERGG 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCc-cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567777787877777652 1 1111 23467899999999999999999999999999999966889999999999877
Q ss_pred ccCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHh
Q psy5309 1173 AEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL 1208 (1618)
Q Consensus 1173 ~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~L 1208 (1618)
|+ ....++.++++.++++|+||+||+|||+|+.+
T Consensus 84 ~~--~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 84 AG--MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred cc--chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 65 45668899999999999999999999999864
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-13 Score=162.92 Aligned_cols=83 Identities=28% Similarity=0.462 Sum_probs=76.1
Q ss_pred HHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCC
Q psy5309 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGD 1283 (1618)
Q Consensus 1204 i~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~ 1283 (1618)
..+.+|+|+..+|...||+.+.+. +..+|+.+.+|||++++|+|||||+||+|+|.+++++||+|++||||++.++
T Consensus 237 ~v~~~G~D~~~fh~~~~pa~l~~~----~~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~ 312 (319)
T cd00814 237 LVHFIGKDIIRFHAIYWPAMLLGA----GLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERP 312 (319)
T ss_pred eEEEEeechhhhhHHHHHHHHHhC----CCCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCC
Confidence 467889999999999999876553 3578999999999999999999999999999999999999999999999999
Q ss_pred CCcCccc
Q psy5309 1284 SVEDANF 1290 (1618)
Q Consensus 1284 ~~~D~~f 1290 (1618)
.++|.+|
T Consensus 313 ~~~d~~f 319 (319)
T cd00814 313 EGKDSDF 319 (319)
T ss_pred CCCCCCC
Confidence 9999987
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.4e-12 Score=137.96 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=92.1
Q ss_pred HHhhHHHHHHHHHHHHHhcccCC-----CCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1095 GILRLYTFIEWVKEILATQSTLR-----TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRE 1169 (1618)
Q Consensus 1095 ~~~kl~N~~~~l~~~l~~~~~~~-----~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~ 1169 (1618)
+++||||+.+|+++..+..+..+ ........|+|+++++++++++++++|++|+|+.|++.++..+...+++|++
T Consensus 13 f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f~~~~~~~Y~e 92 (183)
T cd07961 13 VLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWYIR 92 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHhh
Confidence 77899999999987433221111 1123577899999999999999999999999999999955444556699999
Q ss_pred Hhccc---C------cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCC
Q psy5309 1170 LTAAE---G------GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK 1210 (1618)
Q Consensus 1170 ~~k~~---~------~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgk 1210 (1618)
.+|+. . ...+.++.+++..++++|+|||||+|||+|+.+|+
T Consensus 93 ~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 93 RNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred hchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 88751 1 13456788999999999999999999999999975
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-12 Score=152.22 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=95.0
Q ss_pred CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCC
Q psy5309 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSE 164 (1618)
Q Consensus 85 ~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~ 164 (1618)
.+.-++++.-|.|| +++||||+++++..|+++||+|+.||+|.|..|+|+||.+|+..|++ .|+
T Consensus 34 ~~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~-------~g~------- 97 (411)
T TIGR03447 34 GPEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAER-------DGV------- 97 (411)
T ss_pred CCcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHH-------cCC-------
Confidence 34667899998888 89999999999999999999999999999999999999999988864 121
Q ss_pred CCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCc-cc
Q psy5309 165 DTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIH-VD 243 (1618)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~-~D 243 (1618)
+ +.++++++.+.+.+++++||+. .|
T Consensus 98 ---------------------------------------------t---------~~ela~~y~~~f~~d~~~Lni~~~d 123 (411)
T TIGR03447 98 ---------------------------------------------D---------WRELGTSQIDLFREDMEALRVLPPR 123 (411)
T ss_pred ---------------------------------------------C---------HHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1 2345566677778999999975 43
Q ss_pred ccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 244 WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 244 w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
....|++ +...+...+.+|.++|++|+.
T Consensus 124 --~~~RaTe----~i~~ii~~i~~L~~kG~aY~~ 151 (411)
T TIGR03447 124 --DYIGAVE----SIDEVIEMVEKLLAAGAAYEV 151 (411)
T ss_pred --cccCCCC----CHHHHHHHHHHHHHCCCEEec
Confidence 2233444 467899999999999999964
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=124.21 Aligned_cols=86 Identities=44% Similarity=0.707 Sum_probs=73.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhh
Q psy5309 1357 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHV 1436 (1618)
Q Consensus 1357 ~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~ 1436 (1618)
.....|+|++++++++++++.++|++|+|++|++.+++.|.+.+|.|++.++||
T Consensus 32 ~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~~~~-------------------------- 85 (117)
T cd07959 32 ELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERGGAG-------------------------- 85 (117)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCcc--------------------------
Confidence 356789999999999999999999999999999997568988899998776531
Q ss_pred HHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q psy5309 1437 AEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1516 (1618)
Q Consensus 1437 a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~ 1516 (1618)
..+.++.+++..++++|+||+||+|||+|+.
T Consensus 86 -------------------------------------------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~ 116 (117)
T cd07959 86 -------------------------------------------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHE 116 (117)
T ss_pred -------------------------------------------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhh
Confidence 1234677999999999999999999999986
Q ss_pred c
Q psy5309 1517 L 1517 (1618)
Q Consensus 1517 l 1517 (1618)
+
T Consensus 117 ~ 117 (117)
T cd07959 117 L 117 (117)
T ss_pred C
Confidence 4
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-12 Score=158.66 Aligned_cols=149 Identities=23% Similarity=0.252 Sum_probs=104.7
Q ss_pred CCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCc
Q psy5309 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDA 1288 (1618)
Q Consensus 1209 gkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~ 1288 (1618)
|.|+...|.......+.+.+ +.+|++....+||+..+|+|||||+||+|+|.+++++||+|++|||+++. ++.+++
T Consensus 226 G~Dl~fpHhene~aqs~a~~---g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~-~~~~~l 301 (465)
T TIGR00435 226 GVDLIFPHHENEIAQSEAAF---GKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSV-HYRSPL 301 (465)
T ss_pred ccccccchHHHHHHHHHHhc---CCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhC-CCCCCC
Confidence 67777777666665555543 34567777778888779999999999999999999999999999999986 788999
Q ss_pred ccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHH
Q psy5309 1289 NFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1368 (1618)
Q Consensus 1289 ~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~ 1368 (1618)
+||++.++++.+.++.. +++++.+........ . . . +. +...
T Consensus 302 ~fs~~~l~~a~~~~~rl------------------------------~~~~~~~~~~~~~~~--~-~----~-~~-~~~~ 342 (465)
T TIGR00435 302 DFSEELLEAAKNALERL------------------------------YKALRVLDTTLAYSG--N-Q----S-LN-KFPD 342 (465)
T ss_pred ccCHHHHHHHHHHHHHH------------------------------HHHHHHHHhhhcccc--c-c----c-cc-cchh
Confidence 99999998877666622 222222211111100 0 0 0 00 0112
Q ss_pred HHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHH
Q psy5309 1369 MNLKIKETEDHY-TKMLFKEALRTGFFELQAARD 1401 (1618)
Q Consensus 1369 l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~~n 1401 (1618)
...+.+.+.++| |+++++.|+..++ +++...|
T Consensus 343 ~~~~~~~f~~al~dDlnt~~a~~~l~-~~~~~~n 375 (465)
T TIGR00435 343 EKEFEARFVEAMDDDLNTANALAVLF-ELAKSIN 375 (465)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHH-HHHHHhh
Confidence 345567788888 7899999999985 9887666
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=135.62 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=101.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcccCC---CCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHH
Q psy5309 1092 ADAGILRLYTFIEWVKEILATQSTLR---TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDK 1166 (1618)
Q Consensus 1092 ~~~~~~kl~N~~~~l~~~l~~~~~~~---~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~ 1166 (1618)
+...++++||..+|+.+.+.+..... ........|+|++++++.+++++.++|++|+|++|++.+ +.+. +.+|+
T Consensus 9 ~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i-~~f~~~~l~n~ 87 (180)
T cd07960 9 VAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQAL-NNFCTVDLSAF 87 (180)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHH
Confidence 35578999999999987664422110 112446789999999999999999999999999999994 5554 48899
Q ss_pred HHHHhcccC------c----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1167 YRELTAAEG------G----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1167 Yi~~~k~~~------~----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
|++..+|+. . ....++..+++.++++|+|||||+||++|+.+|.... -.+++...||..+
T Consensus 88 Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~------~~~v~~~~wP~~~ 157 (180)
T cd07960 88 YLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKK------EESVFLEDWPELP 157 (180)
T ss_pred HHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCC------CCCeeccCCCCCc
Confidence 999998832 1 1445788999999999999999999999999985310 0135566776543
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=153.11 Aligned_cols=137 Identities=19% Similarity=0.116 Sum_probs=95.7
Q ss_pred CcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhccc
Q psy5309 1234 MWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLAD 1313 (1618)
Q Consensus 1234 ~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n 1313 (1618)
.+.+.-+.||||+.+|+|||||+||+|++.+++++||+|++|||++++ .+.++++||++.+++..+.+... ...
T Consensus 306 ~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~-hyr~~l~fs~e~L~~a~~~l~~l--~~~--- 379 (557)
T PLN02946 306 SNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGT-HYRSPINYSDVQLESASERIFYI--YQT--- 379 (557)
T ss_pred CCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeecc-CCCCCcEecHHHHHHHHHHHHHH--HHH---
Confidence 344555779999999999999999999999999999999999999987 68899999999988865544411 111
Q ss_pred CCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHH-hcccHHHHHHHH
Q psy5309 1314 SGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTG 1392 (1618)
Q Consensus 1314 ~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~-e~~~f~~a~~~i 1392 (1618)
+++... .+.+.... . ... ..+..+...+..+.+.+.++| |+++++.|+..+
T Consensus 380 -------~~~~~~--------------~l~~~~~~---~---~~~-~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l 431 (557)
T PLN02946 380 -------LHDCEE--------------SLQQHDST---F---EKD-SVPPDTLNCINKFHDEFVTSMSDDLHTPVALAAL 431 (557)
T ss_pred -------HHHHHH--------------Hhhhhccc---c---ccc-ccchhhHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 111100 00010000 0 000 011222345566778899999 789999999998
Q ss_pred HHHHHHHHHHHHH
Q psy5309 1393 FFELQAARDKYRE 1405 (1618)
Q Consensus 1393 ~~~f~~~~n~Y~~ 1405 (1618)
+ +++...|.+++
T Consensus 432 ~-~~vk~~N~~~~ 443 (557)
T PLN02946 432 S-EPLKTINDLLH 443 (557)
T ss_pred H-HHHHHHHHHhh
Confidence 5 99988888875
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-12 Score=155.05 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=109.9
Q ss_pred CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCC
Q psy5309 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSE 164 (1618)
Q Consensus 85 ~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~ 164 (1618)
...++.+|.+.+|||||||||||+||.++||+++|.++..||+|...+++++.|.|+..++..+++..... ...
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~-~~~----- 90 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEE-LLE----- 90 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHH-TSH-----
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhh-hcc-----
Confidence 35788999999999999999999999999999999999999999999999999999999887765433211 000
Q ss_pred CCCCCCCCCCCCch--hcccccCcchHHHHHhhhh-------HHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHH
Q psy5309 165 DTEPQTDKDDDDPV--IKDKSKGKKSKAVAKAGSA-------KYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDL 235 (1618)
Q Consensus 165 ~~~~~~~~~~~~~~--~~~~~~g~~~~~~ak~~~~-------~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l 235 (1618)
..+. -.+.|.+.+..+.+....+ +-..+++..+....+++++ -|...+.+.+++++
T Consensus 91 ----------~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~-----~~~~~~~~~~k~~l 155 (354)
T PF00750_consen 91 ----------EDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRE-----LWQKYILEWSKETL 155 (354)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHH-----HHHHHHHHHHHHHH
T ss_pred ----------cccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHH-----HHHHHHHHHHHHHH
Confidence 0111 1235666666555554411 1112223332221122222 34455888999999
Q ss_pred HHcCCccc-ccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 236 RSIGIHVD-WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 236 ~~lGi~~D-w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
.++|+.+| |..+ .+ -.|...+..++..|.++|++++.
T Consensus 156 ~~l~i~fDv~~~E----~E-s~~~~~v~~vl~~L~e~g~~~~~ 193 (354)
T PF00750_consen 156 QRLYIRFDVWFDE----SE-SFYSGKVDEVLERLKEKGLLYES 193 (354)
T ss_dssp HHTT---SEEEEH----CH-HHHTTHHHHHHHHHHCTTTEEEE
T ss_pred HHHHHHhCcCccc----ch-hhhhhHHHHHHHHHHhCCcEEec
Confidence 99999999 5533 11 23666889999999999999873
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-13 Score=159.89 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=80.4
Q ss_pred hHHhhhhcCCC-CCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccC
Q psy5309 773 YAALVDLKKKP-PFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTY 851 (1618)
Q Consensus 773 ~~~~~~l~~~~-~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr 851 (1618)
..++..|.++| ++..+..--|| +..+.++|||+++ ++|++++++.+++++|+|+..++++.+||++++||||||||
T Consensus 122 ~~~f~~L~~~G~iY~~~~~v~~~-v~~~~~~qwf~~l--~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~ 198 (338)
T cd00818 122 WWVFKQLHEKGLLYRGYKVVPWP-LIYRATPQWFIRV--TKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQR 198 (338)
T ss_pred HHHHHHHHHCCCEeccCCeeeeE-EEEEecCeEEEEc--HHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeec
Confidence 45667788888 66555555554 4445899999999 69999999999999999999999999999999999999999
Q ss_pred CCCcccCCCccccccccCCcceEe
Q psy5309 852 GLGTKLPWDEQWLIESLSDSTIYM 875 (1618)
Q Consensus 852 ~WG~PIP~d~~w~~e~~~D~~iy~ 875 (1618)
+||||||+ |+|++ ++++|+
T Consensus 199 ~WGip~P~---~~~~~--~~~~~~ 217 (338)
T cd00818 199 YWGTPIPV---WYCED--CGEVLV 217 (338)
T ss_pred ccCceeeE---EEecC--CCeEEE
Confidence 99999999 99975 346665
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-12 Score=140.63 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=55.6
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHH
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k 147 (1618)
+..+++++.|.|| |++||||+++++..|+++||+||+|++|+++.|+|+||.||+..|++
T Consensus 19 ~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~ 78 (213)
T cd00672 19 GLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE 78 (213)
T ss_pred CCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH
Confidence 5668999987777 78999999999999999999999999999999999999999998875
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=155.26 Aligned_cols=164 Identities=9% Similarity=0.005 Sum_probs=113.0
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
+++.+|.+.+|||||||||||+||.++||+++|.++..||+|...+++++.|.|+-..+..+++ +|.+...+++
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~----~~~~~~~~~~-- 185 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKK----WGNEAVVKED-- 185 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHH----hCCccccccC--
Confidence 5789999999999999999999999999999999999999999999999999999998876532 3322111110
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhh-----hhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCc
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAG-----SAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIH 241 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~-----~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~ 241 (1618)
+ ..+ +.| ...++.+.. ..+...+.+..++..+++..++. +..++..++.+++++.+||+.
T Consensus 186 -----~--~~~-----l~~-~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w--~~~~~~~l~~~~~~~~~l~V~ 250 (562)
T PRK12451 186 -----P--IRE-----LFK-LYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELW--NWFRHESLKEFSRIYELLGVE 250 (562)
T ss_pred -----c--hHH-----HHH-HHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHH--HHHHHHHHHHHHHHHHHcCCC
Confidence 0 011 111 111222211 11222334445544444444443 355777889999999999999
Q ss_pred ccccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 242 VDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 242 ~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
+||..+= ..|...+..++..|.++|++|+.
T Consensus 251 fD~~~~e------s~~~~~~~~v~~~L~~~g~~~e~ 280 (562)
T PRK12451 251 FTNFQGE------AFYNDLMEDFIGILEEHDLLEES 280 (562)
T ss_pred ceeecch------HhhhhhHHHHHHHHHHCCCEEec
Confidence 9954321 12555679999999999998853
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=145.63 Aligned_cols=126 Identities=24% Similarity=0.347 Sum_probs=94.5
Q ss_pred CCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcc
Q psy5309 1233 EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLA 1312 (1618)
Q Consensus 1233 ~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~ 1312 (1618)
..+-+.-+.+||+..+|+|||||+||+|...+++++|++.+|||+|+++ .+...++||++.|+++.+.+..
T Consensus 250 ~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~-HYR~pl~fsee~L~~A~~~l~r-------- 320 (464)
T COG0215 250 KPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSS-HYRSPLDFSEELLEEAKKALER-------- 320 (464)
T ss_pred CcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHH-HhCCccccCHHHHHHHHHHHHH--------
Confidence 4556778889999999999999999999999999999999999999998 7789999999999887766652
Q ss_pred cCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHH-hcccHHHHHHH
Q psy5309 1313 DSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRT 1391 (1618)
Q Consensus 1313 n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~-e~~~f~~a~~~ 1391 (1618)
+.++++.+...... . ... .+.+...++.++| |+|++..|++.
T Consensus 321 ----------------------l~~~~~~~~~~~~~---~----~~~--------~~~~~~~~f~~al~DDfnt~~al~~ 363 (464)
T COG0215 321 ----------------------LYNALRRLRDLAGD---A----ELA--------DLKEFEARFREALDDDFNTPKALAV 363 (464)
T ss_pred ----------------------HHHHHHHHHhhccc---c----ccc--------hhHHHHHHHHHHHHhccCcHHHHHH
Confidence 22222211111010 0 000 4556667788888 78999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy5309 1392 GFFELQAARDKYRE 1405 (1618)
Q Consensus 1392 i~~~f~~~~n~Y~~ 1405 (1618)
++ ++....|...+
T Consensus 364 l~-~l~~~~~~~~~ 376 (464)
T COG0215 364 LF-ELAKEINRLLE 376 (464)
T ss_pred HH-HHHHHHhhhhh
Confidence 85 88876555554
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-11 Score=151.76 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=92.1
Q ss_pred cccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccC
Q psy5309 1235 WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS 1314 (1618)
Q Consensus 1235 ~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~ 1314 (1618)
+-+.-+.+||++.+|+|||||+||+|+|.+++++||+|++|||++++ .+.++++||++.++++.+.++.. ...
T Consensus 492 ~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLss-hYRspL~fS~e~Le~Ak~~l~Rl--~~~---- 564 (699)
T PRK14535 492 HVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRA-HYRSPLNYSDAHLDDAKGALTRL--YTT---- 564 (699)
T ss_pred cccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcC-CCCCCCCcCHHHHHHHHHHHHHH--HHH----
Confidence 55778889999999999999999999999999999999999999996 78899999999999877666622 111
Q ss_pred CCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHH
Q psy5309 1315 GDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGF 1393 (1618)
Q Consensus 1315 gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~-e~~~f~~a~~~i~ 1393 (1618)
+. .... .. .. ....+..+.+.+.++| |+++++.|+..++
T Consensus 565 ------------------------l~---~~~~----~~-----~~----~~~~l~~~~~~f~~AL~DDlntp~Ala~L~ 604 (699)
T PRK14535 565 ------------------------LK---NTPA----AE-----FM----LSENVNDYTRRFYAAMNDDFGTVEAVAVLF 604 (699)
T ss_pred ------------------------HH---hhhh----cc-----ch----hhhhHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 00 0000 00 00 1123455677888898 7899999999985
Q ss_pred HHHHHHHHHH
Q psy5309 1394 FELQAARDKY 1403 (1618)
Q Consensus 1394 ~~f~~~~n~Y 1403 (1618)
+++...|.+
T Consensus 605 -~lvk~iN~~ 613 (699)
T PRK14535 605 -ELAGEVNKT 613 (699)
T ss_pred -HHHHHHHHH
Confidence 888766654
|
|
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-11 Score=151.38 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=112.8
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
++++.+|.+.+|||||||||||+|+.++||+++|.++..||+|...+++++.|.|+-..+..+.. .++....+++
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~---~~~~~~~~~~-- 189 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFE---KFPNWESVSD-- 189 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHH---hcCcccccCc--
Confidence 34789999999999999999999999999999999999999999999999999999998876532 1221100000
Q ss_pred CCCCCCCCCCCchhcccccCcchHHHHHhh-----hhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCC
Q psy5309 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAG-----SAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGI 240 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~-----~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi 240 (1618)
.+ ... +.+ ...+..+.. ..+...+++..+...+++...+- ...++.++..+++.+.++|+
T Consensus 190 -----~~--i~~-----l~~-~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw--~~~~~~~~~~~~~~y~~l~V 254 (576)
T PLN02286 190 -----QA--IGD-----LQE-FYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAW--AKICEISRREFEKVYQRLRV 254 (576)
T ss_pred -----cc--HHH-----HHH-HHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHHHHHHHHHHHHhCC
Confidence 00 000 111 111111111 12223344555544444544443 36678888999999999999
Q ss_pred cccccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 241 HVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 241 ~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
.+|-..+ ..|...+..++..|.++|++|+.
T Consensus 255 ~fd~~ge-------s~y~~~~~~vi~~L~~~g~~~e~ 284 (576)
T PLN02286 255 ELEEKGE-------SFYNPYIPGVIEELESKGLVVES 284 (576)
T ss_pred eeeecCc-------hhhhhhHHHHHHHHHHCCCEEee
Confidence 9993111 23666789999999999998853
|
|
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=118.28 Aligned_cols=114 Identities=21% Similarity=0.267 Sum_probs=91.3
Q ss_pred HHHhhHHHHHHHHHHHHHhcc--cCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHh
Q psy5309 1094 AGILRLYTFIEWVKEILATQS--TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT 1171 (1618)
Q Consensus 1094 ~~~~kl~N~~~~l~~~l~~~~--~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~ 1171 (1618)
...++++|+++++.+++...- ..+........|+|+++++++++++++++|++|+|++|++. ++++.+.+|+|++..
T Consensus 4 ~l~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~n~y~~~~ 82 (129)
T cd07957 4 ELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEE-IMELARAANKYIDET 82 (129)
T ss_pred HHHhhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHhhhccC
Confidence 346788899999888876532 22222234567999999999999999999999999999999 578889999999988
Q ss_pred cccC-----c--chH---HHHHHHHHHHHHhcCcCCCCchhHHHHHh
Q psy5309 1172 AAEG-----G--MHR---TLVLRFVEVQALLLCPVCPHVAEHVYQLL 1208 (1618)
Q Consensus 1172 k~~~-----~--~~~---~~l~~~l~~l~~lLaP~~P~~aEei~~~L 1208 (1618)
+|+. . ... .++.++++.++++|+|||||+||++|+.|
T Consensus 83 kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 83 APWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred CCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 8742 1 112 35677889999999999999999999864
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-11 Score=147.43 Aligned_cols=85 Identities=36% Similarity=0.549 Sum_probs=69.4
Q ss_pred HHhCCCccccccchhhhhhhcccCCC--CCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDE--PEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGD 1283 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~--~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~ 1283 (1618)
+..|+|+..+|...+...+.+..+.. ...+|+.+.+||||+++|+|||||+||+|+|.+++++||+|++|||+++.++
T Consensus 228 ~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~ 307 (314)
T cd00812 228 YIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP 307 (314)
T ss_pred eecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC
Confidence 45688988888755444445444432 1257899999999999999999999999999999999999999999999877
Q ss_pred CCcCcccCH
Q psy5309 1284 SVEDANFVE 1292 (1618)
Q Consensus 1284 ~~~D~~fs~ 1292 (1618)
.|.+|++
T Consensus 308 --~~~~f~~ 314 (314)
T cd00812 308 --PDADFDW 314 (314)
T ss_pred --cCCCCCC
Confidence 7888863
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-11 Score=146.77 Aligned_cols=82 Identities=30% Similarity=0.562 Sum_probs=69.7
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceecccccccc-ccccccccCCcCCHHHHHHhcCcceeeeehhccCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN-SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~-G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~ 1284 (1618)
+..|+|+...|...++..+.+.. +..+|+.+.+|||++++ |+|||||+||+|+|.+++++||+|++|||+++.+++
T Consensus 230 ~~~G~D~~~~h~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~ 306 (312)
T cd00668 230 HLIGKDILRGWANFWITMLVALF---GEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPY 306 (312)
T ss_pred EEEecchhhhHHHHHHHHHHHhc---CCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCc
Confidence 45688988777777776555432 33578999999999995 599999999999999999999999999999999999
Q ss_pred CcCccc
Q psy5309 1285 VEDANF 1290 (1618)
Q Consensus 1285 ~~D~~f 1290 (1618)
++|.+|
T Consensus 307 ~~d~~~ 312 (312)
T cd00668 307 GDDIRL 312 (312)
T ss_pred cCCCCC
Confidence 999876
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-10 Score=117.34 Aligned_cols=86 Identities=27% Similarity=0.339 Sum_probs=77.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc----------hhHHHHHHHHHHHH
Q psy5309 1358 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM----------HRTLVLRFVEVQAL 1427 (1618)
Q Consensus 1358 ~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~----------~~~~~l~~~~~~a~ 1427 (1618)
....|+|++++++++++++.++|++|+|++|++.++ +|+..+|.|++..+||... ..++++++++.+++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~ 112 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIM-ELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAI 112 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999985 9999999999999998531 11578999999999
Q ss_pred hhcCcchhhHHHHHHHh
Q psy5309 1428 LLCPVCPHVAEHVEMNL 1444 (1618)
Q Consensus 1428 ll~P~~P~~a~~i~~~L 1444 (1618)
+|+||||+++++||+.|
T Consensus 113 lL~P~~P~~aeei~~~l 129 (129)
T cd07957 113 LLSPFMPETAEKILDQL 129 (129)
T ss_pred HhcCCCChHHHHHHHhC
Confidence 99999999999999875
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >KOG2007|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-10 Score=133.30 Aligned_cols=141 Identities=23% Similarity=0.253 Sum_probs=111.5
Q ss_pred CCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcc
Q psy5309 1233 EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLA 1312 (1618)
Q Consensus 1233 ~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~ 1312 (1618)
..|.+..+..||+..+|+|||||++|+|+..+++++|.+++||++++.+ .+.+.++||++.|+.+....... .
T Consensus 287 ~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~-~wr~~ldYs~s~m~~a~q~e~~~--~---- 359 (586)
T KOG2007|consen 287 SQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLH-QWRSPLDYSDSTMEQALQLEKSL--N---- 359 (586)
T ss_pred CccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHH-HhcCcCCchHHHHHHHHHHHHHH--H----
Confidence 3578899999999999999999999999999999999999999999998 67799999999877755444422 0
Q ss_pred cCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHH-hcccHHHHHHH
Q psy5309 1313 DSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRT 1391 (1618)
Q Consensus 1313 n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~-e~~~f~~a~~~ 1391 (1618)
||.. -++...+.. .+ .+.+...+..+++++.....+|+.++ |+++.+.+++.
T Consensus 360 ---------~ff~---------------~~~al~~~~--~~-~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~ 412 (586)
T KOG2007|consen 360 ---------NFFL---------------DVKALLRGA--KP-FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA 412 (586)
T ss_pred ---------HHHH---------------HHHHHHhcc--ch-hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH
Confidence 1111 111111111 11 34566778999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy5309 1392 GFFELQAARDKYRELTA 1408 (1618)
Q Consensus 1392 i~~~f~~~~n~Y~~~~~ 1408 (1618)
+. ++++.+|.|+....
T Consensus 413 ~~-~lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 413 IR-ELVSQGNAYIRESG 428 (586)
T ss_pred HH-HHHhhhhHHHHHhc
Confidence 86 99999999997664
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-10 Score=140.24 Aligned_cols=160 Identities=24% Similarity=0.173 Sum_probs=105.8
Q ss_pred hCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHh-cCcceeeeehhccCCCCc
Q psy5309 1208 LGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVE 1286 (1618)
Q Consensus 1208 Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~-yGaD~lRl~l~~~~~~~~ 1286 (1618)
-|.|+...|-.-......+.. +.++++..+.+||++.+|+|||||+||+|++.+++++ |+++++||++++. .+.+
T Consensus 239 GG~DliFPHHeneiAqs~a~~---g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~-~yr~ 314 (490)
T PRK14536 239 GGVDHIRVHHTNEIAQCEAAT---GKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGG-HYRS 314 (490)
T ss_pred ccccCCCcchhhHHHHHHHhc---CCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhC-CCCC
Confidence 366777666655554433332 4567888888899988999999999999999999998 9999999999996 8889
Q ss_pred CcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCC--CCCCC-cchH
Q psy5309 1287 DANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRT--GSQDS-FNDK 1363 (1618)
Q Consensus 1287 D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~D~ 1363 (1618)
+++||++.|.+..+.+... .+++.... .....+...... ..... ..+.
T Consensus 315 ~l~Fs~e~l~~a~~~~~rl---------------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 365 (490)
T PRK14536 315 QLAFSWEALKTAKAARRSL---------------VRRVARVV--------------DAARATTGSVRGTLAECAAERVAE 365 (490)
T ss_pred CCCCCHHHHHHHHHHHHHH---------------HHHHHHHH--------------Hhhhcccccccccccccccccccc
Confidence 9999999999877766632 11111110 000000000000 00000 0001
Q ss_pred HHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHH
Q psy5309 1364 VFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARD 1401 (1618)
Q Consensus 1364 ~il~~l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~~n 1401 (1618)
-....+..+.+.+.++| |+++++.|+..++ +++...|
T Consensus 366 ~~~~~~~~~~~~f~~al~dDlntp~Al~~l~-~~~~~~n 403 (490)
T PRK14536 366 SRASESELLLTDFRAALEDDFSTPKALSELQ-KLVKDTS 403 (490)
T ss_pred hhhhhHHHHHHHHHHHHHhcCChHHHHHHHH-HHHHHhh
Confidence 11134556778899999 7899999999985 8886544
|
|
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.09 E-value=9e-10 Score=111.84 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=42.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1357 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRE 1405 (1618)
Q Consensus 1357 ~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~ 1405 (1618)
.....|+|++++++++++++.++|++|+|++|++.+ ++|++..|.|++
T Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i-~~~~~~~n~~~~ 82 (117)
T cd07958 35 ELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAAL-MELVNALYKYKK 82 (117)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHH-HHHHHHHHHhhc
Confidence 345679999999999999999999999999999998 499988888874
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-10 Score=122.21 Aligned_cols=101 Identities=24% Similarity=0.333 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHHHHHHHHHhcccC----cc----hHHHHHHHHHHHHHhcCcC
Q psy5309 1126 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFEL-QAARDKYRELTAAEG----GM----HRTLVLRFVEVQALLLCPV 1196 (1618)
Q Consensus 1126 D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l-~~~~n~Yi~~~k~~~----~~----~~~~l~~~l~~l~~lLaP~ 1196 (1618)
|+|++++++.+++++.++|++|+|+.|++.++..+ ...||+|++..+|+. .. .+.++.++++.++++|+||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~ 80 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESREAQYTLYEILKILLILLSPF 80 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHHHHHHHHHHHHHHhhccCCC
Confidence 89999999999999999999999999999955444 457799999998842 11 3478899999999999999
Q ss_pred CCCchhHHHHHhCCCccccccchhhhhhhcccCC
Q psy5309 1197 CPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGD 1230 (1618)
Q Consensus 1197 ~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~ 1230 (1618)
|||+||++|+.|... ..+.-.+++...||.
T Consensus 81 ~P~~aEeiw~~l~~~----~~~~~~si~~~~~p~ 110 (153)
T PF08264_consen 81 MPFIAEEIWQRLKSE----KLGEKSSIFLEKWPE 110 (153)
T ss_dssp SHHHHHHHHHHCTTH----HTTSSSSGGGS----
T ss_pred CcHHHHHHHHHhhhc----cCCCCCeeeeCCCCC
Confidence 999999999766110 112234566777774
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-10 Score=111.57 Aligned_cols=82 Identities=29% Similarity=0.467 Sum_probs=73.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCch
Q psy5309 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVA 1201 (1618)
Q Consensus 1122 ~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~a 1201 (1618)
....|++++++++++++++.++|++|+|++|++. ++.+.+.+|+|++..+| ...++.++++.++++|+|||||+|
T Consensus 36 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-i~~~~~~~n~~~~~~~p----~~~~~~~~l~~~~~lL~P~~P~~a 110 (117)
T cd07958 36 LSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAA-LMELVNALYKYKKKDAQ----HAAVLREALETLVLLLAPFAPHIA 110 (117)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHH-HHHHHHHHHHhhccccc----hHHHHHHHHHHHHHHHcccchHHH
Confidence 4567999999999999999999999999999998 68889999999876443 567889999999999999999999
Q ss_pred hHHHHHh
Q psy5309 1202 EHVYQLL 1208 (1618)
Q Consensus 1202 Eei~~~L 1208 (1618)
|++|+.|
T Consensus 111 eei~~~l 117 (117)
T cd07958 111 EELWEEL 117 (117)
T ss_pred HHHHhhC
Confidence 9999864
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=113.96 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=88.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcccCC-CCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHH
Q psy5309 1092 ADAGILRLYTFIEWVKEILATQSTLR-TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYR 1168 (1618)
Q Consensus 1092 ~~~~~~kl~N~~~~l~~~l~~~~~~~-~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~--~~n~Yi 1168 (1618)
....+.++||+.+++........... +.......|+++++.++++++++.++|++++|++|++. ++++.. .+|+|+
T Consensus 9 ~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~-i~~~~~~~~~N~Yi 87 (135)
T cd07962 9 GRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATA-LYEFFWNDFCDWYL 87 (135)
T ss_pred HHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHhHHHH
Confidence 34577899999988744222111100 11223456899999999999999999999999999999 577765 899999
Q ss_pred HHhcccC---c-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHh
Q psy5309 1169 ELTAAEG---G-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL 1208 (1618)
Q Consensus 1169 ~~~k~~~---~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~L 1208 (1618)
+..+|+. + ....++.++++.++++|+|||||+|+++|+.|
T Consensus 88 ~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 88 ELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 9998852 1 13346788999999999999999999999864
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=111.73 Aligned_cols=86 Identities=26% Similarity=0.267 Sum_probs=77.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcccc--------hhHHHHHHHHHHHH
Q psy5309 1358 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGGM--------HRTLVLRFVEVQAL 1427 (1618)
Q Consensus 1358 ~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~~--------~~~~~l~~~~~~a~ 1427 (1618)
....|++++++++.+++++.++|++|+|++|++.++ +++. ++|+|++.++||... ..+++.++++.+++
T Consensus 40 ~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~-~~~~~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~ 118 (135)
T cd07962 40 LSLADRWILSRLNKTVEEVTEALENYRFSEAATALY-EFFWNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILR 118 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999985 9886 899999999999642 22578999999999
Q ss_pred hhcCcchhhHHHHHHHh
Q psy5309 1428 LLCPVCPHVAEHVEMNL 1444 (1618)
Q Consensus 1428 ll~P~~P~~a~~i~~~L 1444 (1618)
+|+||||++|++++++|
T Consensus 119 lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 119 LLHPFMPFITEELWQRL 135 (135)
T ss_pred HHCccccHHHHHHHhcC
Confidence 99999999999999875
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=133.86 Aligned_cols=93 Identities=23% Similarity=0.199 Sum_probs=77.9
Q ss_pred hCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHh-cCcceeeeehhccCCCCc
Q psy5309 1208 LGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVE 1286 (1618)
Q Consensus 1208 Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~-yGaD~lRl~l~~~~~~~~ 1286 (1618)
-|.|+...|-.-......+. .+..+++....+||++.+|+|||||+||+|++.+++++ |+++++|||+++. ++.+
T Consensus 239 GG~DliFPHHene~Aqs~a~---~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~-~yr~ 314 (481)
T PRK14534 239 GGVDHIGVHHINEIAIAECY---LNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTA-HYRT 314 (481)
T ss_pred cccccCCCcchhHHHHHhhh---cCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhC-CCCC
Confidence 47777777766666543332 25678899999999999999999999999999999996 9999999999887 8889
Q ss_pred CcccCHHHHHHHHHHhhh
Q psy5309 1287 DANFVESMADAAVKKFSA 1304 (1618)
Q Consensus 1287 D~~fs~~~l~~~~~~~n~ 1304 (1618)
+++||++.|++..+.++.
T Consensus 315 ~l~Fs~e~l~~a~~~~~~ 332 (481)
T PRK14534 315 QLKFTFNNLKACKIAREN 332 (481)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998766663
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.6e-10 Score=139.57 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=94.7
Q ss_pred cccccc-cccccccccCCcCCHHHHHHh-cCc----------------ceeeeehhccCCCCcCcccCHHHHHHHHHHhh
Q psy5309 1242 NGHLLL-NSAKMSKSEGNFLTLTEAVKK-FSA----------------DGMRLCLADSGDSVEDANFVESMADAAVKKFS 1303 (1618)
Q Consensus 1242 hGfvld-~G~KMSKSlGNvI~P~~ii~~-yGa----------------D~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n 1303 (1618)
+|++++ +|+|||||+||+|+|.|++++ +|+ |++||++++. ...+|+.|+++.+.....
T Consensus 312 ~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~~~~~~~--- 387 (507)
T PRK01611 312 VGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDLALSFEG--- 387 (507)
T ss_pred EEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHHHHhhcC---
Confidence 388888 899999999999999999999 999 9999999987 678999999997654221
Q ss_pred hhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcc
Q psy5309 1304 ADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKM 1383 (1618)
Q Consensus 1304 ~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~ 1383 (1618)
+.+ . ...++. -|+..+++-... .+..... .....+.|+|++.++..+...+.+++++|
T Consensus 388 ---------~~~-----~--yvqYa~---aR~~sil~k~~~--~~~~~~~-~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~ 445 (507)
T PRK01611 388 ---------NNP-----P--YVQYAH---ARICSILRKAAE--AGIDLLL-ALLTEEEEKELIKKLAEFPEVVESAAEEL 445 (507)
T ss_pred ---------CCc-----H--HHHHHH---HHHHHHHHhhhc--cCccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000 0 111111 011111110000 0000000 11124679999999999999999999999
Q ss_pred cHHHHHHHHHHHHHH-HHHHHH
Q psy5309 1384 LFKEALRTGFFELQA-ARDKYR 1404 (1618)
Q Consensus 1384 ~f~~a~~~i~~~f~~-~~n~Y~ 1404 (1618)
+++.+++.++ +|+. ++++|-
T Consensus 446 ~p~~l~~yl~-~la~~f~~fY~ 466 (507)
T PRK01611 446 EPHRIANYLY-ELAGAFHSFYN 466 (507)
T ss_pred CcHHHHHHHH-HHHHHHHHHHH
Confidence 9999999985 9987 566663
|
|
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=136.98 Aligned_cols=146 Identities=10% Similarity=-0.021 Sum_probs=108.4
Q ss_pred cccceeccccccccccccccccCCcCCHH-----------------------HHHHhcCcceeeeehhccCCCCcCcccC
Q psy5309 1235 WPRGIRANGHLLLNSAKMSKSEGNFLTLT-----------------------EAVKKFSADGMRLCLADSGDSVEDANFV 1291 (1618)
Q Consensus 1235 ~p~~v~~hGfvld~G~KMSKSlGNvI~P~-----------------------~ii~~yGaD~lRl~l~~~~~~~~D~~fs 1291 (1618)
+|+.+.+|||.+.+|.|||||+||+|+|. ++++.+|+|++||++++.. ...|.+|+
T Consensus 356 ~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd 434 (566)
T TIGR00456 356 KKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVFD 434 (566)
T ss_pred CCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCceec
Confidence 47789999999999999999999999998 7888899999999999986 67999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCCCC-cchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccC--CCCCCCcchHHHHHH
Q psy5309 1292 ESMADAAVKKFSADGMRLCLADSGDS-VEDANFVESMADAGILRLYTFIEWVKEILATQSTLR--TGSQDSFNDKVFLSE 1368 (1618)
Q Consensus 1292 ~~~l~~~~~~~n~~~~~~~l~n~gnl-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~il~~ 1368 (1618)
++.+.. . + +|+++. .+..+|+.++.. +......+.. ......+.++.++..
T Consensus 435 ~d~~~~---~-~--------~n~~~yiqYa~aR~~SIlr--------------K~~~~~~~~~~~~~~~~~~~e~~Ll~~ 488 (566)
T TIGR00456 435 WDAMLS---F-E--------GNTAPYIQYAHARICSILR--------------KADIDGEKLIADDFSLLEEKEKELLKL 488 (566)
T ss_pred HHHHhc---c-C--------CCCchhHHHHHHHHHHHHH--------------hcccccccccccccCCCCHHHHHHHHH
Confidence 985433 1 2 122222 133566655532 1111000000 011224457788999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5309 1369 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA 1408 (1618)
Q Consensus 1369 l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~ 1408 (1618)
+..+...+.+++++++++.+++.++ +++...|.|++.|.
T Consensus 489 l~~~~~~v~~a~~~~~p~~~~~~l~-~La~~~N~yy~~~~ 527 (566)
T TIGR00456 489 LLQFPDVLEEAAEELEPHVLTNYLY-ELASLFSSFYKACP 527 (566)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHH-HHHHHHHHHHhcCc
Confidence 9999999999999999999999985 99999999998663
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-09 Score=119.08 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=30.3
Q ss_pred CCeeEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCCC
Q psy5309 303 GPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMA 355 (1618)
Q Consensus 303 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~ 355 (1618)
+.|....++|++.. .+..|.|+||||+||+|.+.||++|++.
T Consensus 5 GkS~G~~i~F~i~~-----------~~~~i~vFTTrpdTifGvtfials~~H~ 46 (185)
T PF13603_consen 5 GKSEGAEIDFKIKG-----------SNEKIEVFTTRPDTIFGVTFIALSPEHP 46 (185)
T ss_dssp -EEEEEEEEEEBTT-----------SSCEEEEEES-GGGGGG--EEEEETTSC
T ss_pred CCcccEEEEEEecC-----------CCCEEEEEECCcchhhCceEEEECCCCH
Confidence 34556677887532 2458999999999999999999999975
|
... |
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.79 E-value=6e-09 Score=110.14 Aligned_cols=56 Identities=30% Similarity=0.261 Sum_probs=52.4
Q ss_pred EeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHH
Q psy5309 92 TTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147 (1618)
Q Consensus 92 v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k 147 (1618)
|+.+.|||||+|||||+++.+++|+++|++|++|++|.+..|+|++|.+|...+.+
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~ 56 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK 56 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHh
Confidence 45688999999999999999999999999999999999999999999999987754
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.70 E-value=8e-09 Score=123.37 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=66.6
Q ss_pred CCCccccccchhhhhhhcccCCCCCCcccceecccccccc-ccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcC
Q psy5309 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN-SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVED 1287 (1618)
Q Consensus 1209 gkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~-G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D 1287 (1618)
|+|. ..|.|||.++...+--..+..+|.. +.|||++++ |+|||||+||+|+|.++++.+|+|++|||+++......|
T Consensus 234 GkDh-~~~ggs~~~~~~i~~~ilg~~~P~~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~ 311 (353)
T cd00674 234 GKDH-ASAGGSYDTGKEIAREIFGGEPPVP-VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKH 311 (353)
T ss_pred Cccc-cccccHHHHHHHHHHHHhCCCCCeE-EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCC
Confidence 5553 3356778866554431122234433 779999995 459999999999999999999999999999998547799
Q ss_pred cccCHHHHHHHHHHhh
Q psy5309 1288 ANFVESMADAAVKKFS 1303 (1618)
Q Consensus 1288 ~~fs~~~l~~~~~~~n 1303 (1618)
++|+.+.. .+++.|.
T Consensus 312 i~Fd~~~~-~~~dey~ 326 (353)
T cd00674 312 IGFDLDIL-RLYDEYD 326 (353)
T ss_pred CCcChhHH-HHHHHHH
Confidence 99998633 3344444
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.6e-09 Score=119.09 Aligned_cols=66 Identities=36% Similarity=0.513 Sum_probs=48.0
Q ss_pred CCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHH
Q psy5309 1233 EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAV 1299 (1618)
Q Consensus 1233 ~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~ 1299 (1618)
..+-+.-+..||+..+|+|||||+||+|...+++++|+++++||+++++ .+.+.++||++.|+++.
T Consensus 234 ~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~-hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 234 KPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLST-HYRKPLNFSEENLEEAK 299 (300)
T ss_dssp S-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS--TTS-EEE-HHHHHHHH
T ss_pred chHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcC-CCCCccccCHHHHHHhc
Confidence 3456677778999999999999999999999999999999999999998 78899999999887743
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.1e-08 Score=123.93 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=56.8
Q ss_pred cccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhh
Q psy5309 1235 WPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFS 1303 (1618)
Q Consensus 1235 ~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n 1303 (1618)
+|.. ++|||+++ +|+|||||+||+|+|.++++.||+|++|||++....+.+|++|+. +..+++.|.
T Consensus 264 ~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey~ 330 (510)
T PRK00750 264 PPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV--IPKLVDEYD 330 (510)
T ss_pred CCee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHHH
Confidence 3444 67999999 499999999999999999999999999999887778889999998 666666555
|
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-07 Score=116.70 Aligned_cols=144 Identities=17% Similarity=0.255 Sum_probs=95.9
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCC--------ChhhHHHHHHHHHHHHhcCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCT--------GMPIKACADKLKREMESFGFP 158 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~--------G~pIe~~a~k~~~~~~~~gi~ 158 (1618)
+.+++|..|.+ |||.+||||.+..+.+|+++|++|++|++|.+.+|+|++ ++| + .+.++ .|.+
T Consensus 17 ~~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~----~~~~y---lG~P 87 (515)
T TIGR00467 17 KNLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-E----ELETY---LGMP 87 (515)
T ss_pred CCeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-H----HHHHh---CCCc
Confidence 35799999988 999999999999999999999999999999999999999 344 1 11111 2222
Q ss_pred CC-CCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHH
Q psy5309 159 PQ-FPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRS 237 (1618)
Q Consensus 159 ~~-~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~ 237 (1618)
-. -| + ..|. ...|++.|.....+.|.+
T Consensus 88 l~~vp-d-----------------------------------------p~g~----------~~s~~~h~~~~~~~~l~~ 115 (515)
T TIGR00467 88 LTRIP-D-----------------------------------------PEGC----------KTSYAEHFLIPFLESLPV 115 (515)
T ss_pred ceecC-C-----------------------------------------CCCC----------cHHHHHHHHHHHHHHHHH
Confidence 10 00 0 0111 246778888889999999
Q ss_pred cCCcccccCceeecCCChhhhHHHHHHHHHHHhc--------C-ccccCceeE-EEecCCCCccc
Q psy5309 238 IGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDR--------H-KIKYGKRYT-VFSPRDNQPCM 292 (1618)
Q Consensus 238 lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~k--------G-~iy~g~~~v-~w~p~~~t~ls 292 (1618)
||+.+++-+.--.+.+ -.|.+.+..++.+-.+= | ....+..|. +.||+|+..+.
T Consensus 116 ~gi~~e~~s~te~Y~s-G~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~cGrv~~ 179 (515)
T TIGR00467 116 LGINPEFIRASKQYTS-GLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCENCGRDTT 179 (515)
T ss_pred cCCeEEEEEHHHhhhc-CChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecCCcCccCc
Confidence 9998886554333333 24666666555432221 1 122233444 68888887755
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-06 Score=85.25 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=66.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHHHHHHHHhhcCc
Q psy5309 1359 SFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM------HRTLVLRFVEVQALLLCPV 1432 (1618)
Q Consensus 1359 ~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~------~~~~~l~~~~~~a~ll~P~ 1432 (1618)
...|+|++++++.+++++.++|++|+|+.|++.+ ++|....|.|++..+||... ..+++.++++.++++|+||
T Consensus 38 ~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~y~~~~~pw~~~~~~~~~~~~~~~~~l~~l~~lL~P~ 116 (117)
T cd07375 38 EEADRELLARLQEFIKRTTNALEALDPTTAVQEL-FKFTNELNWYLDELKPALQTEELREAVLAVLRAALVVLTKLLAPF 116 (117)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHhccHHHHHhhHHHcCchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 4569999999999999999999999999999998 59998789999999998752 2257889999999999999
Q ss_pred c
Q psy5309 1433 C 1433 (1618)
Q Consensus 1433 ~ 1433 (1618)
|
T Consensus 117 ~ 117 (117)
T cd07375 117 T 117 (117)
T ss_pred C
Confidence 7
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=84.02 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=74.6
Q ss_pred HHHhhHHHHHHHHHHHHHhcccCCCC--CCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHh
Q psy5309 1094 AGILRLYTFIEWVKEILATQSTLRTG--SQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT 1171 (1618)
Q Consensus 1094 ~~~~kl~N~~~~l~~~l~~~~~~~~~--~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~ 1171 (1618)
...++++|+.+++...... ..+.. ......|+|++++++.++++++++|++|+|++|++. ++++.+..|+|++..
T Consensus 9 ~~~n~~~r~~~~~~~~~~~--~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~-i~~~~~~~n~y~~~~ 85 (117)
T cd07375 9 AFLNRLYRLLSFFRKALGG--TQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQE-LFKFTNELNWYLDEL 85 (117)
T ss_pred HHHHHHHHHHHHHHHhcCC--CCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhccHHHHHh
Confidence 3456666666654433211 11110 122456899999999999999999999999999999 588998889999988
Q ss_pred cccC------cchHHHHHHHHHHHHHhcCcCC
Q psy5309 1172 AAEG------GMHRTLVLRFVEVQALLLCPVC 1197 (1618)
Q Consensus 1172 k~~~------~~~~~~l~~~l~~l~~lLaP~~ 1197 (1618)
+|+. .....++.++++.++++|+|||
T Consensus 86 ~pw~~~~~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 86 KPALQTEELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred hHHHcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7742 1233567889999999999996
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-06 Score=108.49 Aligned_cols=60 Identities=15% Similarity=0.301 Sum_probs=51.2
Q ss_pred cccc-cc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhh
Q psy5309 1242 NGHL-LL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFS 1303 (1618)
Q Consensus 1242 hGfv-ld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n 1303 (1618)
.+|+ ++ +|+|||||+||+|++.++++.+|+|++||++++. .+.++++|+.+.+ ++++.|.
T Consensus 263 ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~-~~~~~ldFd~~~l-~~~dey~ 324 (515)
T TIGR00467 263 YEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFART-KPEFHISFDLDVI-KLYEDYD 324 (515)
T ss_pred EEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhcc-CCCCCCcCCHHHH-HHHHHHH
Confidence 4444 44 7899999999999999999999999999998877 6679999999987 6666665
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=94.87 Aligned_cols=135 Identities=13% Similarity=0.022 Sum_probs=100.9
Q ss_pred EEEccceeeCCccceeccCcccChHHHHhh-------------------------cCccceEEeecccCcccccccccHH
Q psy5309 1036 IRANGHLLLNSAKMSKSEGNFLTLTEAVKK-------------------------FSADGMRLCLADSGDSVEDANFVES 1090 (1618)
Q Consensus 1036 v~~hG~vl~~G~KMSKS~GNvV~p~eii~~-------------------------yGaDalRl~l~~~~~~~~D~~fs~~ 1090 (1618)
.+..|+|..+|+||||-+||+|+.+|+++. -|.|++||++++. +..+++.|+++
T Consensus 359 h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~-~~~~~~~Fd~d 437 (562)
T PRK12451 359 HVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKN-ERMHNIEFSLE 437 (562)
T ss_pred EEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhc-CCCCCceECHH
Confidence 356677888999999999999999999996 6799999999988 78899999998
Q ss_pred HHHHHH---h-hHHHHHHHHHHHHHhcccCCCCC--CC-CcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy5309 1091 MADAGI---L-RLYTFIEWVKEILATQSTLRTGS--QD-SFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAA 1163 (1618)
Q Consensus 1091 ~~~~~~---~-kl~N~~~~l~~~l~~~~~~~~~~--~~-~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~ 1163 (1618)
.+-+.- + =+.-..-|+.+++.+.+...... .+ .+.+..++..+..+...+.+++++++++.++.. ++++...
T Consensus 438 ~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~y-l~~LA~~ 516 (562)
T PRK12451 438 NMLKFEGETGPYVQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKY-VLDVAQS 516 (562)
T ss_pred HHhCcCCCccHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHH
Confidence 742111 1 11122335555555432110101 11 344567889999999999999999999999998 7999999
Q ss_pred HHHHHHHhc
Q psy5309 1164 RDKYRELTA 1172 (1618)
Q Consensus 1164 ~n~Yi~~~k 1172 (1618)
.|.|++.++
T Consensus 517 fN~fy~~~~ 525 (562)
T PRK12451 517 FNKYYGNVR 525 (562)
T ss_pred HHHHHHhCC
Confidence 999998754
|
|
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0002 Score=81.35 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 230 LAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 230 ~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.++|+.||+ +|+..+...+ +.+.......+|.++|++|.
T Consensus 57 ~i~~dL~wLGl--~~d~~~~qS~----r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 57 MIPEDLEWLGV--KWDEVVIASD----RIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHcCC--CCCCccchhc----cHHHHHHHHHHHHHcCCccc
Confidence 47789999998 6666554433 45566677889999999996
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00024 Score=89.74 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.5
Q ss_pred hHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 229 PLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 229 ~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
+.|.++|+.||+ +|+..+...+ +-..-.....+|.++|++|.
T Consensus 156 ~~I~edL~wLGl--~wD~~~~qSd----r~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 156 DMILEDLKWLGV--KWDEVVIQSD----RLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred HHHHHHHHHcCC--CCCCccCccc----CHHHHHHHHHHHHHcCCCcc
Confidence 577899999997 6666555444 56677778899999999986
|
|
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00016 Score=85.90 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=36.0
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCT 137 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~ 137 (1618)
+..+.+..+ -.|+|.+|||+.+-.+..|+++|-.+.+|++|-+.+.+|+.
T Consensus 22 ~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~ 71 (360)
T PF01921_consen 22 KEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDM 71 (360)
T ss_dssp -SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TT
T ss_pred CccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecC
Confidence 455666665 46999999999999999999999999999999999999984
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00097 Score=84.31 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=32.6
Q ss_pred chhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 227 FPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 227 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
+.+.|.++|+.||+. |+..+...+ |-........+|.++|+.|.
T Consensus 144 ~~~~I~edL~wLGi~--~d~~~~qSd----~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 144 AYDMILEDLDWLGVK--GDEVVYQSD----RIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HHHHHHHHHHHcCCC--CCccccccc----cHHHHHHHHHHHHHcCCcee
Confidence 345778999999977 555544433 66677788899999999886
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >KOG1195|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0032 Score=76.06 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=101.2
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
.++..|.|-+||.+-+.|+||.|..+++-++++..+..|++|..+-+.-+-|.++-..+.-. ..+|-....
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~----~~~g~e~~L----- 179 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGF----QLYGDEEEL----- 179 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccH----HhhCchhhh-----
Confidence 68899999999999999999999999999999999999999999988888888887766532 223321100
Q ss_pred CCCCCCCCCCchhc--ccccCcchHHHHH-hhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc
Q psy5309 167 EPQTDKDDDDPVIK--DKSKGKKSKAVAK-AGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD 243 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~--~~~~g~~~~~~ak-~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D 243 (1618)
. .+|+.+ ++|-..+. +..+ .....-..+.++.++...+|.-+.= ..+-+..++...+...|+|+.+|
T Consensus 180 --~-----~~pI~hL~dvYVk~nk-~~~~~~~~~~~are~f~rlE~~d~e~~k~W--qrfr~lsIe~l~~~Y~Rl~v~FD 249 (567)
T KOG1195|consen 180 --Q-----LNPIKHLFDVYVKINK-DAEKDPDTAEEAREFFKRLEDGDEEHLKLW--QRFRDLSIEKLIKTYNRLNVKFD 249 (567)
T ss_pred --c-----cchHHHHHHHHHHhhh-hhhhCcchHHHHHHHHHHHhcccHHHHHHH--HHhhhhhHHHHHHHHHHhceeee
Confidence 0 011100 00000000 0000 0000111233444443333322111 12345556777788899999999
Q ss_pred -ccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 244 -WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 244 -w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
|.-+ + -.+.+..+.+...+...|++..
T Consensus 250 ~y~gE----S--qv~~e~~~~~~d~~rs~~l~~e 277 (567)
T KOG1195|consen 250 EYSGE----S--QVSNEKMQEALDLLRSANLTEE 277 (567)
T ss_pred eccch----H--HHHHHHHHHHHHHHHhcCCccc
Confidence 3322 2 3577788888888888886554
|
|
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0013 Score=82.19 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=32.8
Q ss_pred chhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 227 FPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 227 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
+.+.|.++|+-||+. |+..+...+ |-..-.....+|.++|++|.-
T Consensus 62 ~~~~I~~dL~WLGl~--wD~~~~qSd----r~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 62 FEESIIEDLGKIEIK--PDSVSFTSD----YFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred HHHHHHHHHHHhCCC--CCCCccccc----cHHHHHHHHHHHHHcCCeEec
Confidence 456788999999965 555554333 555677788999999998863
|
|
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0059 Score=79.04 Aligned_cols=135 Identities=10% Similarity=0.072 Sum_probs=96.8
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHh-----------------------------hcCccceEEeecccCccccc
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVK-----------------------------KFSADGMRLCLADSGDSVED 1084 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~-----------------------------~yGaDalRl~l~~~~~~~~D 1084 (1618)
..+..|+|+ .+|+||||-+||+|+.+|+++ ..|.|++||++++. ...++
T Consensus 364 ~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~-~~~~~ 442 (576)
T PLN02286 364 EHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKN-NRLTN 442 (576)
T ss_pred EEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhc-CCCCC
Confidence 356778997 789999999999999999998 35789999999977 78899
Q ss_pred ccccHHHHHHHH----hhHHHHHHHHHHHHHhcccC----CC---CCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHH
Q psy5309 1085 ANFVESMADAGI----LRLYTFIEWVKEILATQSTL----RT---GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEAL 1153 (1618)
Q Consensus 1085 ~~fs~~~~~~~~----~kl~N~~~~l~~~l~~~~~~----~~---~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al 1153 (1618)
+.|+++.+-+.- -=+.-..-|+.+++.+.+.. .. ..-....++.++..+..+..-+..+.++++.+..+
T Consensus 443 ~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~ 522 (576)
T PLN02286 443 YTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLC 522 (576)
T ss_pred CccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 999998742211 01222334555555543211 00 01113456678889999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy5309 1154 RTGFFELQAARDKYRELT 1171 (1618)
Q Consensus 1154 ~~~~~~l~~~~n~Yi~~~ 1171 (1618)
.. ++++...-|.|-+.+
T Consensus 523 ~Y-l~~LA~~F~~fY~~~ 539 (576)
T PLN02286 523 EY-LYNLSEKFTKFYSNC 539 (576)
T ss_pred HH-HHHHHHHHHHHHhcC
Confidence 87 688887777665544
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0017 Score=85.25 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=33.2
Q ss_pred hchhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 226 HFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 226 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.+.|.++|+-||+. |+..+.+.+ |-..-.....+|.++|++|.
T Consensus 263 e~~~~I~~dl~wLG~~--~d~~~~qS~----r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 263 EFVENILKDIETLGIK--YDAVTYTSD----YFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHHHHHHHHHHHcCCC--CCCcccccc----cHHHHHHHHHHHHHcCCeee
Confidence 3456788999999965 555555443 55667788899999999985
|
|
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0021 Score=81.29 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=31.6
Q ss_pred chhHHHHHHHHcCCcccccC-ceeecCCChhhhHHHHHHHHHHHhcCccc
Q psy5309 227 FPPLAVQDLRSIGIHVDWRR-TFITTDSNPFFDSFVRWQFMRLRDRHKIK 275 (1618)
Q Consensus 227 ~~~~~~~~l~~lGi~~Dw~~-~~~T~d~~p~y~~~v~~~f~~L~~kG~iy 275 (1618)
+.+.|.++|+-||+ +|+. .+...+ |-..-.....+|.++|++|
T Consensus 103 ~~d~IleDL~WLGl--~wDe~~~~QSd----r~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 103 FEQAILDDLATLGV--SWDVGPTYSSD----YMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHHHCCC--CCCCceeeccc----cHHHHHHHHHHHHHcCCEE
Confidence 45678899999996 5654 344333 6667778888999999888
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=75.81 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=102.7
Q ss_pred ccccchhhhhhhcccCCCCCCcccceec-c--ccccc-cccccccccCCcCCHHHHHHhcC-------------------
Q psy5309 1214 QNHLTFFIYIHTAIWGDEPEMWPRGIRA-N--GHLLL-NSAKMSKSEGNFLTLTEAVKKFS------------------- 1270 (1618)
Q Consensus 1214 svh~~~f~s~~~~~~p~~~~~~p~~v~~-h--Gfvld-~G~KMSKSlGNvI~P~~ii~~yG------------------- 1270 (1618)
+-|.+.|..+..+.-. .+..+++.++. + |.+.+ +|.||||-.||+|...++++.-|
T Consensus 343 adq~~~~~ql~~~l~~-~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~ 421 (577)
T COG0018 343 ADQHGHFKQLKAVLEL-LGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAE 421 (577)
T ss_pred CcchhHHHHHHHHHHH-hcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHH
Confidence 5577777655442111 13334443444 3 45555 79999999999999999999888
Q ss_pred ---cceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhh
Q psy5309 1271 ---ADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA 1347 (1618)
Q Consensus 1271 ---aD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 1347 (1618)
.||+||++++. ....++.|+++.+..+. ||-. +.+.++.. |+..+++-....
T Consensus 422 ~vgi~Avry~~l~~-~~~~~~~Fd~d~~lsfe---------------gNt~----pYvQYA~A---Ri~SIlrka~e~-- 476 (577)
T COG0018 422 VVGIDAVRYADLSR-SRDKDYVFDWDKALSFE---------------GNTA----PYVQYAHA---RICSILRKAGED-- 476 (577)
T ss_pred HhhhhhHHHHHHhc-CCCCCcEeeHHHHHhcc---------------CCCc----hhHHHHHH---HHHHHHHhcccc--
Confidence 99999999998 45699999999654421 1210 11222221 222222211110
Q ss_pred cccccCCC--CCCCc-chHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhh
Q psy5309 1348 TQSTLRTG--SQDSF-NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT 1407 (1618)
Q Consensus 1348 ~~~~~~~~--~~~~~-~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~ 1407 (1618)
..+.... ..+.. .++.++.+|.++..-+.++.+.++.|..+.-++ ++...=|.|-+.|
T Consensus 477 -~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~-~LA~~Fn~fY~~~ 537 (577)
T COG0018 477 -ELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLY-DLAGSFNSFYNAC 537 (577)
T ss_pred -ccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHH-HHHHHHHHHHhhC
Confidence 0111100 02222 357789999999999999999999999999975 8887444444444
|
|
| >KOG4426|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0069 Score=71.35 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=54.6
Q ss_pred CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHH
Q psy5309 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147 (1618)
Q Consensus 85 ~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k 147 (1618)
-..++..|.|-+||.--.+|+||.|..+|+|.++|.....|++|++.--.-+-|++.-.+.+-
T Consensus 185 l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIah 247 (656)
T KOG4426|consen 185 LSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAH 247 (656)
T ss_pred cceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999987776777766655443
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0039 Score=78.21 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=26.4
Q ss_pred CCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 96 FPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 96 pP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
||.|||.||||||+++++...+|| +..|.-++
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iL 37 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNL 37 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEE
Confidence 689999999999999999999887 34555443
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0016 Score=79.61 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=43.8
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCT 137 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~ 137 (1618)
..+.|..+ -.|+|.+|||..+-.+.+|+++|-.|-+|+.|.+.+=+|+.
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~ 67 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDY 67 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCC
Confidence 56777776 46999999999999999999999999999999999999985
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0041 Score=74.44 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 96 FPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 96 pP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
+|.|||.|||||++++++.-.+|| +..|.-++
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iL 38 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFIL 38 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEE
Confidence 489999999999999999998887 45555554
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0058 Score=76.91 Aligned_cols=36 Identities=33% Similarity=0.192 Sum_probs=27.9
Q ss_pred EeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 92 TTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 92 v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
++==||.|||.||||||+++.+...+||- ..|.-++
T Consensus 31 ~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iL 66 (554)
T PRK05347 31 HTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNL 66 (554)
T ss_pred EEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEE
Confidence 34445899999999999999999988874 3454443
|
|
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0012 Score=78.82 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=26.6
Q ss_pred EEEccceeeCCc-cceeccCcccChHHHHhhcCccceEEeecccCcccccccccHH
Q psy5309 1036 IRANGHLLLNSA-KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVES 1090 (1618)
Q Consensus 1036 v~~hG~vl~~G~-KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~ 1090 (1618)
-+.=.|++.+|+ |||||+||+++|.|+++-+.++.|||+++.. .+....+|+.+
T Consensus 269 ~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~-~P~~~~~~~~~ 323 (360)
T PF01921_consen 269 PFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMART-KPNKAKDFSFD 323 (360)
T ss_dssp EEEE--EEES--------------HHHHHTTS-HHHHHHHHHCS--TTS-EEE--S
T ss_pred CCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHccc-CCCcceEeccC
Confidence 355677886654 9999999999999999999999999999976 45555555443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0059 Score=76.76 Aligned_cols=37 Identities=38% Similarity=0.351 Sum_probs=28.3
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcc
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRV 128 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V 128 (1618)
+...=| +|.|||.||||||+++++...+||. ..|.-+
T Consensus 51 kv~tRF-aPsPtG~LHiGharaalln~~~Ar~--~gG~~i 87 (574)
T PTZ00437 51 KPYFRF-PPEPNGFLHIGHAKSMNLNFGSARA--HGGKCY 87 (574)
T ss_pred cEEEEe-CCCCCCcccHHHHHHHHHHHHHHHH--hCCEEE
Confidence 344444 5899999999999999999998875 345444
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0085 Score=68.03 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=32.2
Q ss_pred chhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 227 FPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 227 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
+.+.|.++|+-+|+..| ..+...+ +.+.-..+..+|.++|++|.
T Consensus 52 ~~~~I~~dL~wlGl~wD--~~~~QS~----r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 52 YVDSIKEDVKWLGIKPY--KVTYASD----YFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHHHHHcCCCCC--Cceeccc----CHHHHHHHHHHHHHcCCeec
Confidence 34678899999997555 4444322 55566778899999999998
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0066 Score=79.67 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=32.1
Q ss_pred chhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 227 FPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 227 ~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
+.+.|.++|+-||+..|.. .|...+ |-..-.....+|.++|++|..
T Consensus 82 ~~~~I~~dl~wLG~~wd~~-~~~qS~----~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 82 YVEAIKDDVRWLGFDWGEH-LYYASD----YFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred HHHHHHHHHHHcCCCCCCC-ceEeec----CHHHHHHHHHHHHHcCCcccC
Confidence 3467889999999654422 344444 555667778899999999863
|
|
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0091 Score=69.56 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=27.4
Q ss_pred CCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccc
Q psy5309 96 FPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130 (1618)
Q Consensus 96 pP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~ 130 (1618)
.|.|||.|||||++++++.-.+|| +..|.-+++
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLR 38 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVR 38 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence 489999999999999999999888 446655543
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0067 Score=75.19 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=32.0
Q ss_pred hhchhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 225 DHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 225 ~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
+.+.+.|+++|+.+|+.+| ..|. +.. .......+..+|.++|++|+
T Consensus 51 ~~~~~~I~e~L~wLGI~~D--e~y~---QSe-r~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 51 QEYADAIAEDLKWLGINWD--RTFR---QSD-RFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHHHHHHHHcCCCCC--cccc---HHH-HHHHHHHHHHHHHHCCCEEE
Confidence 3445678899999998877 2222 111 23467888999999998875
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0096 Score=67.56 Aligned_cols=32 Identities=31% Similarity=0.271 Sum_probs=25.8
Q ss_pred CCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 96 FPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 96 pP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
+|.|||+||+||++++++.-.+||-. .|.-++
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iL 38 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARKY--GGKFIL 38 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEE
Confidence 48999999999999999999887753 454443
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0094 Score=77.47 Aligned_cols=36 Identities=28% Similarity=0.106 Sum_probs=28.1
Q ss_pred EeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 92 TTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 92 v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
++==||.|||.||||||+++.+--.+||.. .|.-.+
T Consensus 266 ~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~L 301 (788)
T PLN02859 266 YTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYL 301 (788)
T ss_pred EEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEE
Confidence 333458999999999999999999888863 454443
|
|
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0071 Score=74.19 Aligned_cols=49 Identities=24% Similarity=0.400 Sum_probs=39.3
Q ss_pred ccceeeC-CccceeccCcccChHHHHhhcCccceEEeecccCccccccccc
Q psy5309 1039 NGHLLLN-SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFV 1088 (1618)
Q Consensus 1039 hG~vl~~-G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs 1088 (1618)
=.|++.+ |+|||||+||+|++.|+++-+.++.|||++++. .+..-.+|+
T Consensus 267 YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~-kP~r~~~~d 316 (521)
T COG1384 267 YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIART-KPNRHIDFD 316 (521)
T ss_pred eEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeec-CCCcceecC
Confidence 3455644 599999999999999999999999999999987 444444443
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.013 Score=73.07 Aligned_cols=37 Identities=30% Similarity=0.274 Sum_probs=28.0
Q ss_pred EEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 91 FTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 91 ~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
+++==+|.|||.||||||+++++--.+||- ..|.-++
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~--~~G~fiL 46 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFIL 46 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHH--hCCEEEE
Confidence 344445899999999999999999988775 3454443
|
|
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.021 Score=67.39 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.4
Q ss_pred hhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 228 PPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 228 ~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.|.++|+.+|+..|- ..|...+ +-+.-..+..+|.++|++|.
T Consensus 57 ~~~I~~dL~wlGl~wDe-~~~~QS~----r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 57 ADAILADLEWLGLHWDG-PVLYQSQ----RHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHHHCCCCCCC-CceEeec----cHHHHHHHHHHHHHCCCcee
Confidence 45778999999965441 3444333 44556677889999999885
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.017 Score=72.97 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=31.0
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeeccc
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADS 1078 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~ 1078 (1618)
.+.++.+++ .+|+||||.+| .++..++.+. |-+.+++-+++..
T Consensus 227 ~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~l 271 (470)
T TIGR00464 227 VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALL 271 (470)
T ss_pred eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHc
Confidence 555666655 78999999999 7888888876 3566666666543
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.028 Score=69.55 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=30.4
Q ss_pred hhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 228 PPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 228 ~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.|.++|+-+|+ +|+..|...+ +-+.-.....+|.++|.+|.
T Consensus 51 ~~~I~~~L~WlGl--~wDe~y~QSe----R~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 51 DKEILEILNLFGI--SWDKLVYQSE----NLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred HHHHHHHHHHcCC--CCCCCeehhc----cHHHHHHHHHHHHHcCCeee
Confidence 4577889999996 4556665443 34455667888889998885
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.03 Score=70.37 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccc
Q psy5309 96 FPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130 (1618)
Q Consensus 96 pP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~ 130 (1618)
.|-|||.|||||++++.+.-.+|| +..|.-+++
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLR 42 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFAR--HHNGKFLLR 42 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEE
Confidence 489999999999999999999888 456665543
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.066 Score=61.34 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=22.4
Q ss_pred CCCCCCcchhhhhchhhhhHHHHHH
Q psy5309 96 FPYMNGRLHLGHTFSLSKCEFSVRF 120 (1618)
Q Consensus 96 pP~~nG~LHiGHa~~~~~~D~~aR~ 120 (1618)
+|.|||.||+||++++++.-.+||-
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~ 31 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK 31 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH
Confidence 4899999999999999999987773
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.078 Score=66.93 Aligned_cols=39 Identities=28% Similarity=0.260 Sum_probs=30.1
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccc
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~ 130 (1618)
+..+=|+ |-|||.|||||++++++.-.+|| +..|.-+++
T Consensus 45 ~vr~RFA-PSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLR 83 (535)
T PLN02627 45 PVRVRFA-PSPTGNLHVGGARTALFNYLFAR--SKGGKFVLR 83 (535)
T ss_pred ceEEEeC-CCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence 3555565 69999999999999999998888 455655543
|
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.094 Score=66.38 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=29.6
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecc
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLAD 1077 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~ 1077 (1618)
.+.+..+++ .+|+||||.+| .++..++.+. |-+.+++-|++.
T Consensus 237 ~~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 237 VFAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred eEEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHH
Confidence 455566665 78999999999 7788887775 455555555553
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.039 Score=67.40 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=38.0
Q ss_pred cccccc-ccc-ccccccCCcCCHHHHHH--------------------------hcCcceeeeehhccCCCCcCcccCH
Q psy5309 1242 NGHLLL-NSA-KMSKSEGNFLTLTEAVK--------------------------KFSADGMRLCLADSGDSVEDANFVE 1292 (1618)
Q Consensus 1242 hGfvld-~G~-KMSKSlGNvI~P~~ii~--------------------------~yGaD~lRl~l~~~~~~~~D~~fs~ 1292 (1618)
.|.++. +|+ ||||.+||+|...++++ ..|..++||.+++. ...+|+.|++
T Consensus 277 ~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~-~~~~~~~Fdw 354 (354)
T PF00750_consen 277 FGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQ-KRNKDYVFDW 354 (354)
T ss_dssp E-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS--TTS-EEEEC
T ss_pred EEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhc-cCCCCceecC
Confidence 466766 787 99999999999999999 57788888888887 5557777764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.13 Score=56.53 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=46.9
Q ss_pred ecccCCccEEE-EecccccCccCCCeeEEecCCCCeeEEEcCCC----cE-EEecccc-----------------ccccc
Q psy5309 359 LSCLDSKPVFL-VAATLRPETMYGQTNAWVRPDMAYIAFTTATG----EV-FVCTERS-----------------ARNMA 415 (1618)
Q Consensus 359 ~~~~~~~~~~i-v~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~-~i~~~~~-----------------~~~~~ 415 (1618)
++|+.++++|| |++.+..+ +|+|+|+-.|+||-.|++.+.. .. .|...+. .....
T Consensus 90 ihP~t~~~iPI~va~yVl~~--yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~nS~~ 167 (185)
T PF13603_consen 90 IHPLTGKKIPIYVANYVLMD--YGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILINSGE 167 (185)
T ss_dssp E-TTTS-EEEEEEETTS-TT--STTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE-SSGG
T ss_pred ECCCCCCCccEEEECceeec--CCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEEeCCC
Confidence 45668999998 45567777 9999999999999888776531 11 1111110 11247
Q ss_pred cCCCchhhhHHHHhhhhc
Q psy5309 416 YQGFTEVEGKINVLLRLT 433 (1618)
Q Consensus 416 ~~g~~~~~a~~~ii~~l~ 433 (1618)
|.||+..+|+..|++.|+
T Consensus 168 f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 168 FNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GTTSBHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 999999999999998763
|
... |
| >KOG1147|consensus | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.47 Score=58.23 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=33.5
Q ss_pred hhchhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCccccCc
Q psy5309 225 DHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGK 278 (1618)
Q Consensus 225 ~~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~ 278 (1618)
++|...|.++|.-|||.-| -.|+.++ |=..+...-.+|.+.|..|-+.
T Consensus 249 ~eFe~~IleDl~~LgIkpd----~~TyTSD--yF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 249 EEFEDVILEDLSLLGIKPD----RVTYTSD--YFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHHHHHHHHHHHHhCcCcc----eeeechh--hHHHHHHHHHHHHhcCcccccC
Confidence 3445678899999999988 3455543 4445666667788888888764
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=0.56 Score=56.67 Aligned_cols=33 Identities=33% Similarity=0.346 Sum_probs=21.5
Q ss_pred CcEEE--Ecccee-eCCccceeccCccc----ChHHHHhh
Q psy5309 1033 PRGIR--ANGHLL-LNSAKMSKSEGNFL----TLTEAVKK 1065 (1618)
Q Consensus 1033 pk~v~--~hG~vl-~~G~KMSKS~GNvV----~p~eii~~ 1065 (1618)
|..++ .+-.+. .+|+|||||.+|.| +|+++-++
T Consensus 184 P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~D~p~~I~kK 223 (332)
T PRK12556 184 PEYVIQEEGAILPGLDGRKMSKSYGNVIPLFAEQEKLRKL 223 (332)
T ss_pred ceeccccccccccCCCCCCCCCCCCCcccccCCHHHHHHH
Confidence 44444 233343 78999999999988 45555443
|
|
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=0.41 Score=61.29 Aligned_cols=91 Identities=15% Similarity=-0.004 Sum_probs=61.9
Q ss_pred hhccccccc---ccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceecc-------C--------cccChHHHHh
Q psy5309 1003 YKLFSDLIQ---NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSE-------G--------NFLTLTEAVK 1064 (1618)
Q Consensus 1003 ~~~~~~~~~---~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~-------G--------NvV~p~eii~ 1064 (1618)
+..+.++++ .|++|...+..++- ..... +-...++|.+..+|.|||||+ | +..+...+..
T Consensus 292 ~l~GITHViRg~d~~~~t~~Q~~l~~-~Lg~~-~P~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrr 369 (567)
T PRK04156 292 HLLGVTHVLRGKDHIDNTEKQRYIYD-YFGWE-YPETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRR 369 (567)
T ss_pred cCCCCCeEEcccccccChHHHHHHHH-HcCCC-CceEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHH
Confidence 334555666 66776665544432 11122 235688899889999999999 4 2345556665
Q ss_pred h-cCccceEEeecccCcccccccccHHHHHHH
Q psy5309 1065 K-FSADGMRLCLADSGDSVEDANFVESMADAG 1095 (1618)
Q Consensus 1065 ~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~ 1095 (1618)
+ |.++++|.|++..+-...|..|+++.+...
T Consensus 370 rG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~ 401 (567)
T PRK04156 370 RGILPEAIRELIIEVGVKETDATISWENLYAI 401 (567)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Confidence 5 999999999998877778999998765443
|
|
| >KOG1148|consensus | Back alignment and domain information |
|---|
Probab=85.68 E-value=1.2 Score=55.36 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=25.3
Q ss_pred hHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 229 PLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 229 ~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
..|++...-|| |..-..|.++ .+|++.-.|++. |..+|+.|.
T Consensus 301 ~sI~e~V~WLG----~~P~kvTysS-DyFdqLy~~av~-LIrkG~AYV 342 (764)
T KOG1148|consen 301 ESIKEMVAWLG----FEPYKVTYSS-DYFDQLYELAVE-LIRKGKAYV 342 (764)
T ss_pred HHHHHHHHHhC----CCceeeecch-hHHHHHHHHHHH-HHhcCceeE
Confidence 45566666677 4444556654 467777777665 556666553
|
|
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=80.94 E-value=1.5 Score=46.27 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=16.1
Q ss_pred cEEEEcccee-eCCccceecc
Q psy5309 1034 RGIRANGHLL-LNSAKMSKSE 1053 (1618)
Q Consensus 1034 k~v~~hG~vl-~~G~KMSKS~ 1053 (1618)
...+.+|+++ .+|+|||||+
T Consensus 123 p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 123 PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred ceEEEeCCeECCCCCcCCCCC
Confidence 4667789998 5679999995
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1618 | ||||
| 1wz2_A | 967 | The Crystal Structure Of Leucyl-Trna Synthetase And | 8e-50 | ||
| 1wz2_A | 967 | The Crystal Structure Of Leucyl-Trna Synthetase And | 5e-15 | ||
| 1wz2_A | 967 | The Crystal Structure Of Leucyl-Trna Synthetase And | 7e-04 | ||
| 1wkb_A | 810 | Crystal Structure Of Leucyl-Trna Synthetase From Th | 1e-49 | ||
| 1wkb_A | 810 | Crystal Structure Of Leucyl-Trna Synthetase From Th | 4e-15 | ||
| 2wfd_A | 252 | Structure Of The Human Cytosolic Leucyl-Trna Synthe | 8e-26 | ||
| 2wfd_A | 252 | Structure Of The Human Cytosolic Leucyl-Trna Synthe | 2e-19 | ||
| 2wfe_A | 261 | Structure Of The Candida Albicans Cytosolic Leucyl- | 2e-12 | ||
| 2wfe_A | 261 | Structure Of The Candida Albicans Cytosolic Leucyl- | 5e-07 | ||
| 3pz6_A | 311 | The Crystal Structure Of Glleurs-Cp1 Length = 311 | 4e-11 | ||
| 3pz6_A | 311 | The Crystal Structure Of Glleurs-Cp1 Length = 311 | 8e-10 | ||
| 3ziu_A | 637 | Crystal Structure Of Mycoplasma Mobile Leucyl-trna | 4e-04 | ||
| 4aq7_A | 880 | Ternary Complex Of E. Coli Leucyl-Trna Synthetase, | 4e-04 |
| >pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 | Back alignment and structure |
|
| >pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 | Back alignment and structure |
|
| >pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 | Back alignment and structure |
|
| >pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 | Back alignment and structure |
|
| >pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 | Back alignment and structure |
|
| >pdb|2WFD|A Chain A, Structure Of The Human Cytosolic Leucyl-Trna Synthetase Editing Domain Length = 252 | Back alignment and structure |
|
| >pdb|2WFD|A Chain A, Structure Of The Human Cytosolic Leucyl-Trna Synthetase Editing Domain Length = 252 | Back alignment and structure |
|
| >pdb|2WFE|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna Synthetase Editing Domain Length = 261 | Back alignment and structure |
|
| >pdb|2WFE|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna Synthetase Editing Domain Length = 261 | Back alignment and structure |
|
| >pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1 Length = 311 | Back alignment and structure |
|
| >pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1 Length = 311 | Back alignment and structure |
|
| >pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 | Back alignment and structure |
|
| >pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 391 bits (1005), Expect = e-116
Identities = 154/585 (26%), Positives = 245/585 (41%), Gaps = 127/585 (21%)
Query: 652 QVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGE 711
V + +I++ YG+ AV KL I+SQ DK+KL++A + +Y ++ GI V
Sbjct: 355 IVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPP 414
Query: 712 FKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
++GK VQEVK+ + K++ G+A + + S +
Sbjct: 415 YEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVI--------------------SRFGN 454
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDE 830
V+ + DQW++DYG P WK A + L M +
Sbjct: 455 R-----------------------AVIKIIHDQWFIDYGNPEWKEKARKALERMKILPET 491
Query: 831 VRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 890
R F A ++WL + AC+R GLGT LPWD +W+IESLSDSTIYMAYYT++ +
Sbjct: 492 RRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQE 551
Query: 891 GENGNALNIKAEDLTPEVWDYVFFKA------APFPPKCRVPKAKLDIMRREFQYWYPVD 944
G + E LTPE +DY+F + K +P + M+ EF+YW
Sbjct: 552 G------KLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYW---- 601
Query: 945 LRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYK 1004
+P R +G
Sbjct: 602 ------------------------------YPLDWRCSGK-------------------- 611
Query: 1005 LFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVK 1064
DLI NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A++
Sbjct: 612 ---DLIPNHLTFFIFNHVAIFREEH--WPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIE 666
Query: 1065 KFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSF 1124
+ AD +RL + + D ++ ++ F E + + + ++ +
Sbjct: 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQF--AEYEVKGNVELKD 724
Query: 1125 NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT-AAEGGMHRTLVL 1183
D+ L +N IKET + + + A++ F+ + Y T + R ++
Sbjct: 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLR 784
Query: 1184 RFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIW 1228
+V L+ P PH+ E +++ LG + ++ A W
Sbjct: 785 TLADVWVRLMAPFTPHICEELWEKLGGE---------GFVSLAKW 820
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 300 bits (769), Expect = 4e-85
Identities = 93/427 (21%), Positives = 149/427 (34%), Gaps = 140/427 (32%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFRE 71
+ IE++ Q+ W KI+E + D
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRD------------------------------------ 29
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
+ KF+ T FPY++G LH+GH + + + RF R++G VLFP
Sbjct: 30 ------------KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77
Query: 132 FGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAV 191
+H TG PI A+++K
Sbjct: 78 MAWHITGSPIVGIAERIKNRDP-------------------------------------- 99
Query: 192 AKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITT 251
K W + ++ + F D + + +F A + G VDW R F TT
Sbjct: 100 ------KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTT 153
Query: 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIK 311
P F F+ WQF +L+++ I G + P P DHD GE V +Y +IK
Sbjct: 154 SLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIK 213
Query: 312 MRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVA 371
L + + + ++L AATLRPET+YG TN WV P+ Y+
Sbjct: 214 FELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPNATYV-------------- 250
Query: 372 ATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLR 431
E ++ ++ +A +++Q + +I V+
Sbjct: 251 --------------------KAKVRRKDKEETWIVSKEAAYKLSFQ-----DREIEVIEE 285
Query: 432 LTGQVCI 438
G+ I
Sbjct: 286 FKGEKLI 292
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 5e-49
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 38/233 (16%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A+++
Sbjct: 610 GKDLIPNHLTFFIFNHVAIFREEH--WPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
AD +RL + + D ++
Sbjct: 668 NGADVVRLYIMSLAEHDSDFDWRRKEVGKL------------------------------ 697
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
++ F E + + + ++ + D+ L +N IKET + + + A
Sbjct: 698 ---RKQIERFYELISQF--AEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 1389 LRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
++ F+ + Y T + R ++ +V L+ P PH+ E +
Sbjct: 753 VQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEEL 805
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-43
Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 13/167 (7%)
Query: 439 RSGDECVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSR 497
R G+ V+ + DQW++DYG P WK A + L M + R F A ++WL + AC+R
Sbjct: 451 RFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACAR 510
Query: 498 TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVW 557
GLGT LPWD +W+IESLSDSTIYMAYYT++ + G + E LTPE +
Sbjct: 511 KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG------KLDPEKLTPEFF 564
Query: 558 DYVFFKS------APFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
DY+F + K +P + M+ EF+YWYP+D RCSGK
Sbjct: 565 DYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGK 611
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-29
Identities = 29/175 (16%), Positives = 65/175 (37%), Gaps = 24/175 (13%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEVQA 1499
+N IKET + + + A++ F+ + Y T + R ++ +V
Sbjct: 732 RLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWV 791
Query: 1500 LLLCPVCPHVAEHVYQLLGKKGSIVKARWPE--GGPIDDILVRSSSYLMEAAHAFRLQVK 1557
L+ P PH+ E +++ LG +G + A+WPE ++ + ++ +
Sbjct: 792 RLMAPFTPHICEELWEKLGGEGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIK---- 847
Query: 1558 NHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQSIVLTTMKQMMEVRE 1612
I+ +K + A ++ A W+ V + + + +
Sbjct: 848 -EIIEVAKIE-------------NAKRAYIYTA---EDWKWKVAEVVSEKRDFKS 885
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 638
T LPWD +W+IESLSDSTIYMAYYT++ + G+
Sbjct: 516 TPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK 553
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 376 bits (968), Expect = e-113
Identities = 147/561 (26%), Positives = 235/561 (41%), Gaps = 108/561 (19%)
Query: 652 QVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGE 711
V + +I++ YG+ AV KL I+SQ DK+KL++A + +Y ++ GI V
Sbjct: 355 IVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPP 414
Query: 712 FKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
++GK VQEVK+ + K++ G+A + +
Sbjct: 415 YEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVI------------------------- 449
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDE 830
+ V+ + DQW++DYG P WK A + L M +
Sbjct: 450 -----------------SRFGNR-AVIKIIHDQWFIDYGNPEWKEKARKALERMKILPET 491
Query: 831 VRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 890
R F A ++WL + AC+R GLGT LPWD +W+IESLSDSTIYMAYYT++ +
Sbjct: 492 RRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQE 551
Query: 891 GENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 950
G + E LTPE +DY+F + + +
Sbjct: 552 G------KLDPEKLTPEFFDYIFLEEFSED----------------KEKELEKKTGIPAE 589
Query: 951 DLIQNHLTFFIYIHTAIWGDEPEMW-PRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDL 1009
+ + +E E W P R +G DL
Sbjct: 590 IIHEMK-------------EEFEYWYPLDWRCSG-----------------------KDL 613
Query: 1010 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSAD 1069
I NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A+++ AD
Sbjct: 614 IPNHLTFFIFNHVAIFREEH--WPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGAD 671
Query: 1070 GMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129
+RL + + D ++ ++ F E + + + ++ + D+
Sbjct: 672 VVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQF--AEYEVKGNVELKDIDRWM 729
Query: 1130 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEV 1188
L +N IKET + + + A++ F+ + Y T + R ++ +V
Sbjct: 730 LHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADV 789
Query: 1189 QALLLCPVCPHVAEHVYQLLG 1209
L+ P PH+ E +++ LG
Sbjct: 790 WVRLMAPFTPHICEELWEKLG 810
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 301 bits (772), Expect = 1e-86
Identities = 127/690 (18%), Positives = 217/690 (31%), Gaps = 205/690 (29%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFRE 71
+ IE++ Q+ W KI+E + D
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRD------------------------------------ 29
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
+ KF+ T FPY++G LH+GH + + + RF R++G VLFP
Sbjct: 30 ------------KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77
Query: 132 FGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAV 191
+H TG PI A+++K
Sbjct: 78 MAWHITGSPIVGIAERIKNRDP-------------------------------------- 99
Query: 192 AKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITT 251
K W + ++ + F D + + +F A + G VDW R F TT
Sbjct: 100 ------KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTT 153
Query: 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIK 311
P F F+ WQF +L+++ I G + P P DHD GE V +Y +IK
Sbjct: 154 SLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIK 213
Query: 312 MRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVA 371
L + + + ++L AATLRPET+YG TN WV P+ Y+
Sbjct: 214 FELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPNATYV-------------- 250
Query: 372 ATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLR 431
E ++ ++ +A +++Q + +I V+
Sbjct: 251 --------------------KAKVRRKDKEETWIVSKEAAYKLSFQ-----DREIEVIEE 285
Query: 432 LTGQVCIR-------SGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHD-----EV 479
G+ I SGDE ++ + D + + D E+
Sbjct: 286 FKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEI 345
Query: 480 RRNFGASLNWLHE-----YACSRTYGLGTKLPWDEQWLIESLSDST-------IYMAYYT 527
+ + YG + + I+S D
Sbjct: 346 LEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEY 405
Query: 528 VAHLLQGGTFRGEN-GNALNIKAEDLTPEVWDYVFFKSAPFPPKCR-------------- 572
+ + + G+ A+++ + + ++ A R
Sbjct: 406 HKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQW 465
Query: 573 -VPKAKLDIMRREFQY-----WYPVDLRCSGKVSTKLPWDEQWLI--------------- 611
+ + + + P R + + W ++
Sbjct: 466 FIDYGNPEWKEKARKALERMKILPETRR--AQFEAIIDWLDKKACARKIGLGTPLPWDPE 523
Query: 612 ---ESLSDSTIYMAYYTVAHLLQGGTFRGE 638
ESLSDSTIYMAYYT++ + G+
Sbjct: 524 WVIESLSDSTIYMAYYTISRHINKLRQEGK 553
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 2e-51
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 38/233 (16%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A+++
Sbjct: 610 GKDLIPNHLTFFIFNHVAIFREEH--WPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
AD +RL + + D ++
Sbjct: 668 NGADVVRLYIMSLAEHDSDFDWRRKEVGKL------------------------------ 697
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
++ F E + + + ++ + D+ L +N IKET + + + A
Sbjct: 698 ---RKQIERFYELISQFA--EYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 1389 LRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
++ F+ + Y T + R ++ +V L+ P PH+ E +
Sbjct: 753 VQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEEL 805
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 1e-44
Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 13/167 (7%)
Query: 439 RSGDECVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSR 497
R G+ V+ + DQW++DYG P WK A + L M + R F A ++WL + AC+R
Sbjct: 451 RFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACAR 510
Query: 498 TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVW 557
GLGT LPWD +W+IESLSDSTIYMAYYT++ + G + E LTPE +
Sbjct: 511 KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG------KLDPEKLTPEFF 564
Query: 558 DYVFFKSA------PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
DY+F + K +P + M+ EF+YWYP+D RCSGK
Sbjct: 565 DYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGK 611
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 1e-18
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEVQA 1499
+N IKET + + + A++ F+ + Y T + R ++ +V
Sbjct: 732 RLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWV 791
Query: 1500 LLLCPVCPHVAEHVYQLLG 1518
L+ P PH+ E +++ LG
Sbjct: 792 RLMAPFTPHICEELWEKLG 810
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 2e-12
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 712 FKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
F+ ++++ +++ K +IG ++ PV+ + LP + D TG+V SVP+ +P
Sbjct: 275 FQDREIEVIEEF--KGEKLIGKYVRNPVSGDE-VIILPAEFVDPDNATGVVMSVPAHAPF 331
Query: 772 DYAALVDLKKKPPFREKYHVTDEM 795
D+ AL DLK++ EKY + +
Sbjct: 332 DHVALEDLKRETEILEKYDIDPRI 355
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-29
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 297 ASGEGVGPQEYTLIKMRLV-------KPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAW 349
SGEGV PQEY IK+ L+ + + + + + + +
Sbjct: 1 GSGEGVQPQEYIGIKLELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSN 60
Query: 350 VRPDMAYIALSC--LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCT 407
+ + L +D+ V+L+AATLRPETM GQTN WV P Y A+ EV + +
Sbjct: 61 PKNKAIFDQLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVS 120
Query: 408 ERSARNMAYQGFTEVE--GKINVLLRLTGQVC 437
E +A NMA+QG + G+++ + ++G
Sbjct: 121 EHAAVNMAHQGLNNNKPFGELDFISEISGSDL 152
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 6e-24
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
+ PY P+PII++P+ G L AV + E+ + S +D+ KL + KE+ Y KGFY GIM +G F
Sbjct: 220 LEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMKMGPF 279
Query: 713 KGKKVQEVKKLLQKKIDIIGVAL 735
G+ V++ K+ + + +
Sbjct: 280 AGQSVKDCKQSCRDLLVQNNQCI 302
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 | Back alignment and structure |
|---|
Score = 84.4 bits (208), Expect = 2e-17
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 694 KELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLS 752
+ ++ + + G K E+ + + D++ ++AP++ + I+ LP+ +
Sbjct: 115 EVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLET 174
Query: 753 IREDKGTGIVTSVPSDSPDDYAALVDLKKK-PPFREKYHVTDEMCV 797
I+ DKGTGIVTSVPSD+PDDYA D+ + EKY V + +
Sbjct: 175 IKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLML 220
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 37/135 (27%)
Query: 301 GVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALS 360
+GPQEYTL+K+++++PYP+KL S
Sbjct: 1 AMGPQEYTLLKLKVLEPYPSKL-------------------------------------S 23
Query: 361 CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFT 420
L K +FLVAATLRPETM+GQTN WVRPDM YI F T G++F+CT+++ARNM+YQGFT
Sbjct: 24 GLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFT 83
Query: 421 EVEGKINVLLRLTGQ 435
+ G + V+ L G+
Sbjct: 84 KDNGVVPVVKELMGE 98
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 54/83 (65%), Positives = 71/83 (85%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++PVP+I++P +GNL AVT+ ++LKIQSQND++KL EAKE +YLKGFY+GIMLV F
Sbjct: 166 VLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGF 225
Query: 713 KGKKVQEVKKLLQKKIDIIGVAL 735
KG+KVQ+VKK +QKK+ G AL
Sbjct: 226 KGQKVQDVKKTIQKKMIDAGDAL 248
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 9e-19
Identities = 58/134 (43%), Positives = 73/134 (54%), Gaps = 10/134 (7%)
Query: 665 PE--YGNL-CAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVK 721
PE +G C V K + D ++ Y G V VK
Sbjct: 39 PETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAA-RNMSYQGF----TKDNGVVPVVK 93
Query: 722 KLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKK 781
+L +I+G +L AP+TS+ VIY LPML+I+EDKGTG+VTSVPSDSPDD AAL DLKK
Sbjct: 94 EL--MGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKK 151
Query: 782 KPPFREKYHVTDEM 795
K R KY + D+M
Sbjct: 152 KQALRAKYGIRDDM 165
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 649 IVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML 708
I + D VPI+ +YG+ CA + LKIQS D +L AKEL Y +GFY+G ML
Sbjct: 161 IEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTML 220
Query: 709 VGEFKGKKVQEVKKLLQKKIDIIGVALK--APVTSHS 743
+G++KG KV++ K +++ + G+A P H
Sbjct: 221 IGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHH 257
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 4e-23
Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 30/132 (22%)
Query: 306 EYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSK 365
Y IK+RL P + +
Sbjct: 2 GYVGIKIRLTDVAPQAQELFKKE------------------------------SLDVKEN 31
Query: 366 PVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGK 425
V+LVAATLRPETMYGQT +V P + Y F G+ F+ TER+ +NM++Q T G
Sbjct: 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGY 91
Query: 426 INVLLRLTGQVC 437
L + G+
Sbjct: 92 YKPLFTINGKTL 103
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 2e-15
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 708 LVGEFKGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVP 766
+ + K K L +IG + AP + + LPM ++ KGTG+VT VP
Sbjct: 80 MSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVP 139
Query: 767 SDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLD-YGEPTWKAAAEQ 819
SDSPDD+ DL KP E Y + + + + + YG+ +
Sbjct: 140 SDSPDDFVTTRDLANKP---EYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVND 190
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 50/229 (21%)
Query: 1018 IYIHTAIWGDEPEM-----W--PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
+Y + W P M + P + +G++ +N AKMSKS G F+ + + F AD
Sbjct: 311 VYFLSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADS 367
Query: 1071 MRLCL-ADSGDSVEDANFVESMAD---------AGIL-----RLYTFIE-WVKEILATQS 1114
+R A ++D + ++ D + R FI +LA++
Sbjct: 368 LRYYYTAKLSSRIDDIDL--NLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASEL 425
Query: 1115 TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKY------- 1167
D + + + F +A+R L ++Y
Sbjct: 426 A----------DPQLYKTFTDAAEVIGEAWESREFGKAVRE-IMALADLANRYVDEQAPW 474
Query: 1168 ----RELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212
+E A+ ++ + V L PV P + E L +L
Sbjct: 475 VVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTEL 523
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 19/95 (20%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-----W--PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD +Y + W P M + P + +G++ +N AKMSKS
Sbjct: 302 LYHFIGKD---I-----VYFLSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 350
Query: 1257 GNFLTLTEAVKKFSADGMRLCL-ADSGDSVEDANF 1290
G F+ + + F AD +R A ++D +
Sbjct: 351 GTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDL 385
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 46/231 (19%), Positives = 76/231 (32%), Gaps = 45/231 (19%)
Query: 1018 IYIHTAIW------------GDEPEMW--PRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1063
I H W + W P I AN +L L K S S + + E +
Sbjct: 300 IPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFL 359
Query: 1064 KKFSADGMRLCLADSGDSVEDANFV-ESMAD------AGIL-----RLYTFIEWVKEILA 1111
F AD +R L D++F L R TF+ +
Sbjct: 360 DVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVN--RYF-- 415
Query: 1112 TQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKY---- 1167
+ + D+ L E+ KE + FK+AL+ L + ++Y
Sbjct: 416 -DGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKR-VMSLASFGNRYFDHK 473
Query: 1168 -------RELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
+ ++ +L + V+ +LL P P +E ++ LL D
Sbjct: 474 QPWKTAKEDKVRTGTTVNISLQI--VKALGILLEPFLPDASEKIWHLLNLD 522
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 53/266 (19%), Positives = 92/266 (34%), Gaps = 48/266 (18%)
Query: 1204 VYQLLGKDLIQNHLTFF----IYIHTAIWGDEPEMW--PRGIRANGHLLLNSAKMSKSEG 1257
V +GKD I H F+ + + W P I AN +L L K S S
Sbjct: 291 VIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRN 350
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GD 1316
+ + E + F AD +R L D++F + + + L ++ G
Sbjct: 351 WAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSF---SDFKVRINEE-----LVNNLG- 401
Query: 1317 SVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKET 1376
NFV R TF+ + + + D+ L E+ KE
Sbjct: 402 -----NFVH--------RALTFVN--RYF---DGVVPERGELDELDREALEEIEKAFKEV 443
Query: 1377 EDHYTKMLFKEALRTGFFELQAARDKY-----------RELTAAEGGMHRTLVLRFVEVQ 1425
+ FK+AL+ L + ++Y + ++ +L + V+
Sbjct: 444 GELIMNYRFKDALKR-VMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQI--VKAL 500
Query: 1426 ALLLCPVCPHVAEHVEMNLKIKETED 1451
+LL P P +E + L + E +
Sbjct: 501 GILLEPFLPDASEKIWHLLNLDEVKR 526
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 106/697 (15%), Positives = 196/697 (28%), Gaps = 190/697 (27%)
Query: 193 KAGSAKYQWQ-IMQSLGLEDDEIRKFADASHWLDHFPP-LAVQDLRSIGIHVD----WRR 246
+ G +YQ++ I+ ED + F D D L+ +++ I + D R
Sbjct: 10 ETGEHQYQYKDILSVF--EDAFVDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 247 TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMD-------HDRASG 299
F T S + V+ +F+ + +I Y + QP M DR
Sbjct: 67 LFWTLLSKQ--EEMVQ-KFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 300 EGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPE---TMYGQTNAWVRPDMAY 356
+ +Y + +++ L LRP + G +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALL------------ELRPAKNVLIDG---------VLG 160
Query: 357 IALSCLDSKPVFLVAATLRPETMYGQTN---AWVRPDMAYIAFTTATGEVFVCTERSARN 413
+ + + + + W+ + + V ++
Sbjct: 161 SGKTWV-------ALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQ 208
Query: 414 MAYQGFTEVEGKINVLL-------RLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAE 466
+ + + N+ L L + + + C++ L + W A
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK----AWNAFNL 264
Query: 467 QC--------------LANMNTYH---DEVRRNFGAS------LNWLHEYACSRTYGLGT 503
C L+ T H D L +L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--------Q 316
Query: 504 KLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN-----GNALN--IKA--EDLTP 554
LP E S I A ++ G +N + L I++ L P
Sbjct: 317 DLP-REVLTTNPRRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 555 EVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESL 614
+ +F + + FPP +P L + W+ V V KL SL
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNKL------HKYSL 416
Query: 615 SDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVT 674
+ + ++ + + EN AL+ + V
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSI-------------------------VD 451
Query: 675 VYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIM--LVGEFKGKKVQEVKKL------LQK 726
Y K +D + Y FY I L +++ + + L++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQ---Y---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 727 KIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKK--PP 784
KI A A S++ TL L + I D+ Y LV+ P
Sbjct: 506 KIRHDSTAWNAS---GSILNTLQQLKFYKPY---I-----CDNDPKYERLVNAILDFLPK 554
Query: 785 FREKYHVTDEMCVV--ALCDQWYLDYGEPTWKAAAEQ 819
E + ++ AL + E ++ A +Q
Sbjct: 555 IEENLICSKYTDLLRIALMAE-----DEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-08
Identities = 102/705 (14%), Positives = 180/705 (25%), Gaps = 244/705 (34%)
Query: 550 EDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK------VSTKL 603
+D+ + + +K + +W L + V L
Sbjct: 39 QDMPKSI-----LSKEEID---HIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVL 87
Query: 604 PWDEQWLIESLSD-----STIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDP 658
+ ++L+ + S + Y L N N QV
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------NDN----------QVFAKYN 130
Query: 659 VPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAK--ELVYLKGFYDGIMLVGEFKGKK 716
V +Q Y KL+ L E + + V + G +L G GK
Sbjct: 131 VSRLQP-----------YLKLR-------QALLELRPAKNVLIDG-----VL-G--SGKT 164
Query: 717 VQEVKKLLQKKID------IIGVALKAPVTSHSVIYTL--------PMLSIREDKGTGIV 762
+ L K+ I + LK + +V+ L P + R D + I
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI- 223
Query: 763 TSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQC-- 820
A L L K P+ V + + W A C
Sbjct: 224 ---KLRIHSIQAELRRLLKSKPYENCLLVLLN-----VQNAK-------AWNAFNLSCKI 268
Query: 821 ------------LANMNTYH---DEVRRNFGAS------LNWLHEYACSRTYGLGTKLPW 859
L+ T H D L +L LP
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--------QDLP- 319
Query: 860 DEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN-----GNALN--IKA--EDLTPEVWD 910
E S I A ++ G +N + L I++ L P +
Sbjct: 320 REVLTTNPRRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 911 YVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLR--------CSGKDLIQNHL-TFFI 961
+F + + FPP +P L + W+ V L++ I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 962 YIHTAIWGDEPEMWPRGIRANGHLLLN-SAKDLIQNHLTFFI--YKLFSDLIQNHLT--- 1015
I + +L L ++ H + + Y + + L
Sbjct: 427 SIP-----------------SIYLELKVKLENEYALHRS-IVDHYNIPKTFDSDDLIPPY 468
Query: 1016 ----FFIYI--H--TAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFS 1067
F+ +I H + ++ + L+ FL +K
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRM-------VFLDF--------RFLE-----QKIR 508
Query: 1068 ADGMRL-CLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFND 1126
D ++++ L+ Y K + ++ D
Sbjct: 509 HDSTAWNASGSILNTLQQ------------LKFY------KPYICDNDPKYERLVNAILD 550
Query: 1127 KVFLSEMNLKIKETED-------HYTKMLFKEALRTGFFELQAAR 1164
+ E NL + D + +F+EA + Q R
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK------QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 8e-06
Identities = 102/710 (14%), Positives = 201/710 (28%), Gaps = 229/710 (32%)
Query: 930 LDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHL--LL 987
+D E QY Y KD++ F+ D +M P+ I + + ++
Sbjct: 7 MDFETGEHQYQY--------KDILSVFEDAFV--DNFDCKDVQDM-PKSILSKEEIDHII 55
Query: 988 NSAKDLIQNHLTFFI---------YKLFSDLIQNHLTF------------------FIYI 1020
S + F+ K ++++ + F +I
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 1021 HTAIWGDEPEMWPRGI-RANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSG 1079
++ D + R +L L A + + + DG+ SG
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---------DGV----LGSG 162
Query: 1080 DSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1139
K +A L Q + K+F +NLK
Sbjct: 163 ---------------------------KTWVALDVCLSYKVQCKMDFKIFW--LNLKNCN 193
Query: 1140 TEDHYTKMLFK-------------EALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFV 1186
+ + +ML K + + + + + R L ++ + LVL V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 1187 E----VQALLL-CPV-----CPHVAEHVYQLLGKDLIQNH----------LTFFIYIHTA 1226
+ A L C + V + + + +H +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----L 308
Query: 1227 IW-GDEPEMWPRGIRANGHLLLN--SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGD 1283
+ P+ PR + L+ + + + L + K + D + + S +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 1284 SVEDANFVESMADAAVKKFSAD----GMRLCLADSGDSVEDANFVESMADAGILRLYTFI 1339
+E A + + +V F + L L D V + + L Y+ +
Sbjct: 365 VLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSD---VMVVVNK--LHKYSLV 417
Query: 1340 EWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAA 1399
E + + + + L++K ++
Sbjct: 418 E----------------KQPKESTISIPSIYLELKVKLEN-------------------- 441
Query: 1400 RDKYRELTAAEGGMHRTLVLRFVEVQAL----LLCP-----VCPHVAEHVEMNLKIKETE 1450
E +HR++V + + L+ P H+ H LK E
Sbjct: 442 ----------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHP 487
Query: 1451 DHYTKMLFKEALRTGFFELQAARDKYRELTAA---EGGMHRTL-VLRFVEVQALLLCPVC 1506
+ T LF R F + + K R + A G + TL L+F + +C
Sbjct: 488 ERMT--LF----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY---ICDND 538
Query: 1507 PHVAEHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQV 1556
P V +L D L + L+ + + L++
Sbjct: 539 PKYERLVNAIL------------------DFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 4e-04
Identities = 70/558 (12%), Positives = 147/558 (26%), Gaps = 160/558 (28%)
Query: 1133 MNLKIKETEDHYTKML--FKEALRTGFFELQAARDKYRE-LTAAEGGMHRTLVLRFVEVQ 1189
M+ + E + Y +L F++A F + + +D + L+ E + ++ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNF-DCKDVQDMPKSILSKEE--IDHIIMSKDAVSG 63
Query: 1190 A-LLLCPVCPHVAEHVYQLLGKDLIQNH-----------------LTFFIYIHTAIWGDE 1231
L + E V + + + L N+ +I ++ D
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 1232 PEMWPRGI-RANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM----RLCLADSGDSVE 1286
+ R +L L A + + + DG+ + +A D
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---------DGVLGSGKTWVA--LDVCL 172
Query: 1287 DANFVESMADAAV-----KKFSADGM-----RLCLADSGDSVEDANFVESM---ADAGIL 1333
M S + + +L + ++ ++ +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 1334 RLYTFIE--------------WVKEILAT---QS-TLRTGSQDSFNDKVFLSEMNLKIKE 1375
L ++ + L T D FLS
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHIS 290
Query: 1376 TEDH-------YTKMLFKEALRTGFFEL--QA-------------------AR-DKYREL 1406
+ H K L + L +L + A D ++ +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 1407 TAAEGGMHRTL-----VLRFVEVQALLL-CPVCP---HVAEHVEMNL---KIKETEDHYT 1454
+ + + VL E + + V P H+ + + IK
Sbjct: 351 NCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 1455 KMLFKEAL-----RTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL----LLCP- 1504
L K +L + + + + + E +HR++V + + L+ P
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 1505 ----VCPHVAEHVYQL------------------LGKKGSIVKARWPEGGPIDDILVRSS 1542
H+ H+ + L +K W G I + L +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 1543 SYLMEAAHAFRLQVKNHI 1560
Y K +I
Sbjct: 529 FY------------KPYI 534
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 45/224 (20%), Positives = 76/224 (33%), Gaps = 47/224 (20%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
HT W P P+ I A+G LL KMSKS GN + V F D +R
Sbjct: 279 HTVYW---PAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRY 335
Query: 1074 CLADSGDSVEDANF-VESMA---------DAGIL--RLYTFIEWVKEILATQSTLRTGSQ 1121
L +D ++ +++ + G L R + + + + +
Sbjct: 336 FLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLG-----AAVPDPGE 390
Query: 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA--------- 1172
+ D L+ + ++ +H+ AL + + A ++Y
Sbjct: 391 FTDEDTALLAAADALLERVREHFDVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDA 449
Query: 1173 --AEGGMHRTL-----VLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
+ L V+R +LLL PV P + LLG
Sbjct: 450 AEDQQRFRTVLYTTLEVVRIA---SLLLQPVMPESTAKLLDLLG 490
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 55/271 (20%), Positives = 91/271 (33%), Gaps = 68/271 (25%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEG 1257
++GKD+ + F HT W P P+ I A+G LL KMSKS G
Sbjct: 268 LHMIGKDI----IRF----HTVYW---PAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIG 316
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDS 1317
N + V F D +R L +D ++ E DA + + +AD LA+
Sbjct: 317 NVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNE---DAIIGRVNAD-----LAN---- 364
Query: 1318 VEDANFVESMADAGIL--RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
+ G L R + + + + + + D L+ + ++
Sbjct: 365 -----------ELGNLAQRSLSMVAKNLG-----AAVPDPGEFTDEDTALLAAADALLER 408
Query: 1376 TEDHYTKMLFKEALRTGFFELQAARDKYRELTA-----------AEGGMHRTL-----VL 1419
+H+ AL + + A ++Y + L V+
Sbjct: 409 VREHFDVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVV 467
Query: 1420 RFVEVQALLLCPVCPHVAEHVEMNLKIKETE 1450
R +LLL PV P + L E
Sbjct: 468 RIA---SLLLQPVMPESTAKLLDLLGQPTDE 495
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 81 AVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP 140
+ F+ T Y NG H+GH + + RF RL G V + TG
Sbjct: 5 HHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRY-----LTGT- 58
Query: 141 IKACAD----KLKREMESFGFPPQ 160
D K+ G P
Sbjct: 59 -----DVHGQKMAETAAKEGIPAA 77
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 45/226 (19%), Positives = 72/226 (31%), Gaps = 55/226 (24%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
H W P P+ + A+G L KMSKS GN + E V+++ D +R
Sbjct: 290 HAVYW---PAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRY 346
Query: 1074 CLADSGDSVEDANF-VESMA---------DAGIL--RLYTFIEWVKEILATQSTLRTGSQ 1121
L +D ++ E++ D G L R + I E +
Sbjct: 347 FLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCE-----GKVPQPGA 401
Query: 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA----ARDKYR 1168
S DK L + + ++ AL +F Q +
Sbjct: 402 FSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPA 461
Query: 1169 EL-----TAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
+ AE LR V +++ P P AE + +L
Sbjct: 462 RMGTVLYVTAEV-------LRRV---GIMVQPFIPQSAEKLLDILA 497
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 55/281 (19%), Positives = 90/281 (32%), Gaps = 76/281 (27%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEG 1257
++GKD+ F H W P P+ + A+G L KMSKS G
Sbjct: 279 AHIIGKDI----SRF----HAVYW---PAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVG 327
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDS 1317
N + E V+++ D +R L +D ++ +A V + +AD LA+
Sbjct: 328 NVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSH---EAIVNRTNAD-----LAN---- 375
Query: 1318 VEDANFVESMADAGIL--RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
D G L R + I E + S DK L + + ++
Sbjct: 376 -----------DLGNLAQRSLSMIAKNCE-----GKVPQPGAFSEADKAILDQADAALET 419
Query: 1376 TEDHYTKMLFKEALRT---------GFFELQA----ARDKYREL-----TAAEGGMHRTL 1417
AL +F Q + + AE
Sbjct: 420 ARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEV------ 473
Query: 1418 VLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLF 1458
LR V +++ P P AE + L + + + +L
Sbjct: 474 -LRRV---GIMVQPFIPQSAEKLLDILAVPADKRQFADVLA 510
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 80 DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
S +K++ T Y NG+ H+GH + L + RF RL G V F TG
Sbjct: 17 QGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYF-----LTGT 71
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-07
Identities = 40/222 (18%), Positives = 72/222 (32%), Gaps = 48/222 (21%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
H W P P + ++G + K+SKS GN E K+F D ++
Sbjct: 308 HAIYW---PAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKY 364
Query: 1074 CLADSGDSVEDANFVESM------AD-AGIL-----RLYTFIEWVKEILATQSTLRTGSQ 1121
L + +D ++ + + A L R V + ++
Sbjct: 365 FLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEP------AE 418
Query: 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA----ARDKYR 1168
S +DK ++ +N + +Y + AL + A +
Sbjct: 419 YSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTA 478
Query: 1169 ELTAAEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
L ++ T+ LR + L PV P A+ + LG
Sbjct: 479 RLGTV---LYVTMEGLRIC---TMFLQPVMPQKAKEIMDALG 514
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 51/284 (17%), Positives = 91/284 (32%), Gaps = 69/284 (24%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEG 1257
++GKD I L F H W P P + ++G + K+SKS G
Sbjct: 297 VHVVGKD-I---LKF----HAIYW---PAFLMSAELPLPERLVSHGWWTKDHKKISKSLG 345
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDS 1317
N E K+F D ++ L + +D ++ + V + + + LAD
Sbjct: 346 NAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSD---KNMVARLNGE-----LAD---- 393
Query: 1318 VEDANFVESMADAGIL--RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
G L R V + ++ S +DK ++ +N
Sbjct: 394 -----------TLGNLVSRCVAPKINVNGMWPEP------AEYSESDKTLIASLNNLAGT 436
Query: 1376 TEDHYTKMLFKEALRT---------GFFELQA----ARDKYRELTAAEGGMHRTL-VLRF 1421
+ +Y + AL + A + L ++ T+ LR
Sbjct: 437 VDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTV---LYVTMEGLRI 493
Query: 1422 VEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTG 1465
+ L PV P A+ + L + E + ++ G
Sbjct: 494 C---TMFLQPVMPQKAKEIMDALGVPEAARVGMENYLFGIVKPG 534
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
FF T P Y+N H+GH +S + R++R+KG+ V TG
Sbjct: 27 VFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFV-----MTGT 72
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 23/105 (21%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD---------SGDSVEDANFVE 1089
+G ++++ KMSKS GNF T+ + +K + A+ +R L S ++++
Sbjct: 257 SGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ----- 311
Query: 1090 SMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMN 1134
A A + RLYT + + +A ++F + F+ M+
Sbjct: 312 --ARAALERLYTALRGTDKTVAPA------GGEAFEAR-FIEAMD 347
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD---------SGDSVEDANFVE 1292
+G ++++ KMSKS GNF T+ + +K + A+ +R L S ++++
Sbjct: 257 SGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ----- 311
Query: 1293 SMADAAVKKF--SADGMRLCLADSGDSVEDANFVESMAD 1329
A AA+++ + G +A +G +A F+E+M D
Sbjct: 312 --ARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDD 348
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 49/232 (21%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
HT W P P+ + A+G + KMSK+ GN + E V+++ D +R
Sbjct: 264 HTVYW---PAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRY 320
Query: 1074 CLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA------TQSTL------RTGSQ 1121
L +D +F + + + LA + G
Sbjct: 321 FLLREVPFGQDGDFSKK----------AILNRINGELANEIGNLYSRVVNMAHKFLGGEV 370
Query: 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA--------- 1172
D+ + IK E++ K+ F +A+ + + +KY +
Sbjct: 371 SGARDEEYAKIAQESIKNYENYMEKVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERK 429
Query: 1173 ---AEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFF 1220
+ ++ + L + LL P+ P+ + Q+LG+ L +
Sbjct: 430 KEELQKVLYALVDGLFVL---THLLYPITPNKMKEALQMLGEKEFLKELKPY 478
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEG 1257
L+GKD+ L F HT W P P+ + A+G + KMSK+ G
Sbjct: 253 LHLVGKDI----LRF----HTVYW---PAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLG 301
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
N + E V+++ D +R L +D +F
Sbjct: 302 NVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDF 334
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
KF+ T P Y+N HLGH ++ + R+ RL+ V F TG
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFF-----LTGT 51
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 41/187 (21%)
Query: 1046 SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA---------DAGI 1096
A MSKS+GN + + VK+ AD R+ + A + G+
Sbjct: 635 PAVMSKSKGNGVMVGPFVKEQGADIARI-------------TILFAAPPENEMVWTEEGV 681
Query: 1097 L-------RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLF 1149
R+Y + +E L S + D+ +++ +K+ + + F
Sbjct: 682 QGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRF 741
Query: 1150 KEALRT---GFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQ 1206
T E A +YR+ + + +L P PH+AE ++
Sbjct: 742 ----NTAIAALMEFLNALYEYRK-----DRPVTPVYRTAIRYYLQMLFPFAPHLAEELWH 792
Query: 1207 LLGKDLI 1213
D +
Sbjct: 793 WFWPDSL 799
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 49/128 (38%)
Query: 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREK 72
IE + Q W+ + + R K + FPY +G LH+GH +
Sbjct: 7 HAIEAKWQRFWEEKGFMKAKDLPGGR----GKQYVLVMFPYPSGDLHMGHLKN------- 55
Query: 73 IYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132
Y T+GD + RF R++G VL P
Sbjct: 56 -Y--TMGDVL-----------------------------------ARFRRMQGYEVLHPM 77
Query: 133 GFHCTGMP 140
G+ G+P
Sbjct: 78 GWDAFGLP 85
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 1481 AAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
+ + + +L P PH+AE ++ S+ +A WPE
Sbjct: 758 YRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-PDSLFEAGWPE 806
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 24/105 (22%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD---------SGDSVEDANFVE 1089
G L +N KMSKS GN +++ EA+K+ + +R L S +++E+
Sbjct: 260 AGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLEN----- 314
Query: 1090 SMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMN 1134
+ R Y + + + ++ S+ D+ F M+
Sbjct: 315 --GRLALERFYLALRGLPVVNHEKT-------SSYTDR-FYEAMD 349
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-06
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD---------SGDSVEDANFVE 1292
G L +N KMSKS GN +++ EA+K+ + +R L S +++E+
Sbjct: 260 AGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLEN----- 314
Query: 1293 SMADAAVKKF--SADGMRLCLADSGDSVEDANFVESMAD 1329
A+++F + G+ + + S D F E+M D
Sbjct: 315 --GRLALERFYLALRGLPVVNHEKTSSYTDR-FYEAMDD 350
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 17/104 (16%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLAD---------SGDSVEDANFV 1088
L+++ KMSKS GNF+T+ + + FS R S D+++ +
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASK-- 347
Query: 1089 ESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
L + + E L E
Sbjct: 348 -----IARENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKE 386
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLAD---------SGDSVEDA--- 1288
L+++ KMSKS GNF+T+ + + FS R S D+++ +
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIA 349
Query: 1289 -----NFVESMADAAVKKFSADGMRLCLADSGDSVED--ANFVESMAD 1329
N + ++ + ++ +FVE ++
Sbjct: 350 RENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISF 397
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 50/128 (39%)
Query: 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREK 72
++IE +VQ WD ++ +E +K++ PY +GRLH+GH +
Sbjct: 28 EEIESKVQLHWDEKRTFE-----VTEDESKEKYYCLSMLPYPSGRLHMGHVRN------- 75
Query: 73 IYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132
Y T+GD + R+ R+ GK VL P
Sbjct: 76 -Y--TIGDVI-----------------------------------ARYQRMLGKNVLQPI 97
Query: 133 GFHCTGMP 140
G+ G+P
Sbjct: 98 GWDAFGLP 105
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 1482 AEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
+G R L+ + +L P PH+ ++Q L +G I A WP
Sbjct: 761 TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPV 809
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-05
Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 37/184 (20%)
Query: 1045 NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA---------DAG 1095
+KMSKS+ N + V+++ AD +RL F+ + ++G
Sbjct: 636 GMSKMSKSKNNGIDPQVMVERYGADTVRL-------------FMMFASPADMTLEWQESG 682
Query: 1096 I-------LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE-TEDHYTKM 1147
+ R++ + + + N K +++ I + T+D +
Sbjct: 683 VEGANRFLKRVWKLVYEHTAKGDVAAL--NVDALTENQKALRRDVHKTIAKVTDDIGRRQ 740
Query: 1148 LFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1207
F A+ EL K + + + +L V +L P PH+ ++Q
Sbjct: 741 TFNTAI-AAIMELMNKLAKAPTDGEQDRALMQEALLAVV----RMLNPFTPHICFTLWQE 795
Query: 1208 LGKD 1211
L +
Sbjct: 796 LKGE 799
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 41/223 (18%), Positives = 65/223 (29%), Gaps = 53/223 (23%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
H W P M R + G LL + KMSK+ GN + ++K+ D +R
Sbjct: 265 HAVFW---PTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALR 321
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA------TQSTL------RTGS 1120
L +D E + LA Q T G
Sbjct: 322 YYLLREIPYGQDTPVSEE----------ALRTRYEADLADDLGNLVQRTRAMLFRFAEGR 371
Query: 1121 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA----ARDKY 1167
L+E ++ F AL + + + +
Sbjct: 372 IPEPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEP 431
Query: 1168 RELTAAEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
E A ++R + LR ++LL P P + + LG
Sbjct: 432 EEARAV---LYRVVEGLRIA---SILLTPAMPDKMAELRRALG 468
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
+ F+ T P Y+N HLGH ++ +F R++RL G R F TG
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFF-----LTGT 49
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 19/79 (24%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLL-NSAKMSKSE 1256
+ L+GKD+ L H W P M R + G LL + KMSK+
Sbjct: 254 WHLIGKDI----LKP----HAVFW---PTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTL 302
Query: 1257 GNFLTLTEAVKKFSADGMR 1275
GN + ++K+ D +R
Sbjct: 303 GNVVDPFALLEKYGRDALR 321
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 9e-05
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
+ FF T P Y+N H+GH +S + R++R+KG+RV TG
Sbjct: 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFA-----LTGT 55
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 57/152 (37%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTF--PFPYMNGRLHLGHTFSLSKF 69
K+E+EV W REKI++++ V + +T + P P NG H+GH ++
Sbjct: 10 FPKLEEEVLAFWKREKIFQKS----VENRKGGPRYTVYEGP-PTANGLPHVGHA--QAR- 61
Query: 70 REKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129
+ D R+ ++G
Sbjct: 62 -------SYKDLF-----------------------------------PRYKTMRGYYAP 79
Query: 130 FPFGFHCTGMPIKACADKL-----KREMESFG 156
G+ G+P++ +K KRE+E++G
Sbjct: 80 RRAGWDTHGLPVELEVEKKLGLKSKREIEAYG 111
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 44/219 (20%), Positives = 76/219 (34%), Gaps = 50/219 (22%)
Query: 1039 NGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGIL 1097
+G +L KMSKS+GN + + ++KF AD +R + S D F + ++
Sbjct: 581 HGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPN-----LV 635
Query: 1098 RLYTFIEWVKEILAT-QSTLR----TGSQDSFN-------------DKVFLSEMNLKIKE 1139
R E V++ T + + D + D+ L+ M I+
Sbjct: 636 R-----ETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQR 690
Query: 1140 TEDHYTKMLFKEALRT--GF-------FELQAARD--KYRELTAAEGGMHRTL--VLRFV 1186
+ + R F + ++ R E + TL L V
Sbjct: 691 VTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLV 750
Query: 1187 EVQALLLCPVCPHVAEHVYQLLGKDLIQN-----HLTFF 1220
A L P P +AE ++Q L + + HL +
Sbjct: 751 ---ATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADW 786
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 1242 NGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
+G +L KMSKS+GN + + ++KF AD +R + S D F ++ V+
Sbjct: 581 HGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVR 640
Query: 1301 KF 1302
+
Sbjct: 641 DY 642
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 19/121 (15%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
G + + KMSKS GN + +++ + +RL L SG ED + + D A
Sbjct: 282 TGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLF-SGHYREDRFWSNEVLDEANA 340
Query: 1301 KFSADGMRLCLADSGDSVEDAN-----FVESMAD-----AGILRLYTFIEWVKEILATQS 1350
+ + R A + DA + +AD + L W + L+
Sbjct: 341 RLA----RWRSATALPEAPDATDVIARVRQYLADDLDTPKALAALD---GWCTDALSYGG 393
Query: 1351 T 1351
Sbjct: 394 H 394
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYT------ 1101
KMSKS+GN + E V+++ AD +R L +D + R +
Sbjct: 528 KMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMA--RNFANKLYNA 585
Query: 1102 --FIE-WVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT--G 1156
F+ + A + T + D+ S ++ ++E Y + +A R
Sbjct: 586 ARFVLLSREGFQAKEDTP------TLADRFMRSRLSRGVEEITALYEALDLAQAAREVYE 639
Query: 1157 FF--ELQAARDKYRELT--AAEGGMHRTL-VLRFVEVQAL-LLCPVCPHVAEHVYQLLG 1209
E D Y E A + G TL L V L LL P+ P + +YQ L
Sbjct: 640 LVWSEFC---DWYLEAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALT 695
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 11/121 (9%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRT--GFF--ELQAARDKYRELT--AAEGGMHRTL-VLR 1493
++ ++E Y + +A R E D Y E A + G TL L
Sbjct: 613 RLSRGVEEITALYEALDLAQAAREVYELVWSEFC---DWYLEAAKPALKAGNAHTLRTLE 669
Query: 1494 FVEVQAL-LLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAF 1552
V L LL P+ P + +YQ L K + WPE G D+ R+ L +A A
Sbjct: 670 EVLAVLLKLLHPMMPFLTSELYQALTGKEELALEAWPEPGGRDEEAERAFEALKQAVTAV 729
Query: 1553 R 1553
R
Sbjct: 730 R 730
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1618 | |||
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 3pz6_A | 311 | Leurs, leucyl-tRNA synthetase; editing domain, gll | 100.0 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 99.97 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 99.97 | |
| 2wfd_A | 252 | Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN | 99.97 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 99.97 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 99.96 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 99.95 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 99.95 | |
| 2wfg_A | 261 | Cytosolic leucyl-tRNA synthetase; ligase, editing | 99.95 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 99.95 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 99.94 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 99.94 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 99.94 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 99.94 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 99.93 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 99.93 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 99.91 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.89 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 99.8 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 99.76 | |
| 1wny_A | 186 | Isoleucyl-tRNA synthetase; ligase, structural geno | 99.73 | |
| 1wka_A | 147 | Valyl-tRNA synthetase; editing, CP1, fidelity, the | 99.63 | |
| 3o0a_A | 219 | Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt | 99.62 | |
| 2ajg_A | 196 | Leucyl-tRNA synthetase; editing domain, ligase; 2. | 99.61 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 99.57 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 99.57 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 99.45 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 99.35 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.35 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.16 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 99.0 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 98.82 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 98.74 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 98.73 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 97.46 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 97.37 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 97.33 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 97.25 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 97.17 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 97.03 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 96.82 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 96.55 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 96.53 | |
| 1wka_A | 147 | Valyl-tRNA synthetase; editing, CP1, fidelity, the | 96.43 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 96.26 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 96.18 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 95.83 | |
| 3o0a_A | 219 | Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt | 95.79 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 95.75 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 95.55 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 95.4 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 95.21 | |
| 1wny_A | 186 | Isoleucyl-tRNA synthetase; ligase, structural geno | 95.05 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 94.98 | |
| 2ajg_A | 196 | Leucyl-tRNA synthetase; editing domain, ligase; 2. | 94.61 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 91.68 | |
| 2wfd_A | 252 | Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN | 91.47 | |
| 2wfg_A | 261 | Cytosolic leucyl-tRNA synthetase; ligase, editing | 91.09 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 88.44 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 83.93 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 83.33 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 83.31 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 82.2 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 80.74 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 80.52 |
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-128 Score=1291.70 Aligned_cols=862 Identities=32% Similarity=0.571 Sum_probs=679.8
Q ss_pred hhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCe
Q psy5309 11 YLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKF 90 (1618)
Q Consensus 11 ~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 90 (1618)
.++++|++||++|+++++|+++.+. +.+.++|
T Consensus 5 ~~~~iE~~~~~~W~~~~~f~~~~~~------------------------------------------------~~~~~kf 36 (967)
T 1wz2_A 5 NFKAIEEKWQKRWLEAKIFEPNIRD------------------------------------------------KPKEKKF 36 (967)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCGGG------------------------------------------------SCGGGCC
T ss_pred CHHHHHHHHHHHHHhCCCcccCccc------------------------------------------------cCCCCcE
Confidence 5789999999999999999987652 1134789
Q ss_pred EEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy5309 91 FTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQT 170 (1618)
Q Consensus 91 ~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~ 170 (1618)
++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||..|++++. |.
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~-----~~------------- 98 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN-----RD------------- 98 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHT-----TC-------------
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhc-----cc-------------
Confidence 999999999999999999999999999999999999999999999999999999987421 10
Q ss_pred CCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceee
Q psy5309 171 DKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFIT 250 (1618)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T 250 (1618)
....+.+.+.+|++.+++++|.+|++|+.++.+.++++|++||+++||+++|.|
T Consensus 99 --------------------------~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T 152 (967)
T 1wz2_A 99 --------------------------PKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYT 152 (967)
T ss_dssp --------------------------HHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBC
T ss_pred --------------------------hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEE
Confidence 001112223458999999999999999999999999999999999999999999
Q ss_pred cCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCCc
Q psy5309 251 TDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPV 330 (1618)
Q Consensus 251 ~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 330 (1618)
+|.||.|.++++|+|.+|+++|+||+|.++|+|||.|+|+|||+||++++.++++.|+.++|++.+. +++.
T Consensus 153 ~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~---------~~~~ 223 (967)
T 1wz2_A 153 TSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN---------GEVI 223 (967)
T ss_dssp STTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCS---------SSCC
T ss_pred CCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCC---------CCce
Confidence 9988999999999999999999999999999999999999999999999999999999999986321 1236
Q ss_pred EEEEeecCccccccCceEEeCCCCCceeecccCC---ccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEec
Q psy5309 331 FLVAATLRPETMYGQTNAWVRPDMAYIALSCLDS---KPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCT 407 (1618)
Q Consensus 331 ~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~---~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~ 407 (1618)
+|+||||||||||||+||||||+..|+.++. .+ .+.+|++
T Consensus 224 ~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~-~~~~~~~~~i~a------------------------------------ 266 (967)
T 1wz2_A 224 YLPAATLRPETVYGVTNMWVNPNATYVKAKV-RRKDKEETWIVS------------------------------------ 266 (967)
T ss_dssp EEEEEESCGGGGGGCCEEEECSSSCEEEEEE-ECSSCEEEEEEE------------------------------------
T ss_pred EEEEEcCCchHhhhheEEEECCCCcEEEEEe-cCCCcceeeehH------------------------------------
Confidence 9999999999999999999999999998743 12 1334443
Q ss_pred cccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhh
Q psy5309 408 ERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASL 487 (1618)
Q Consensus 408 ~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~ 487 (1618)
++.+.++.+++ ...+++.+++|..+. |..+.++++
T Consensus 267 ~~~~~~~~~~~-----~~~~~~~~~~G~~l~--G~~~~~P~~-------------------------------------- 301 (967)
T 1wz2_A 267 KEAAYKLSFQD-----REIEVIEEFKGEKLI--GKYVRNPVS-------------------------------------- 301 (967)
T ss_dssp HHHHHHHHHSS-----CEEEEEEECCSSTTS--SCEEECSSS--------------------------------------
T ss_pred HHHHHHHHhhc-----cCcEEEEEEEchhhc--CCEEECCCC--------------------------------------
Confidence 32222233332 112345556666666 666665554
Q ss_pred hccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCC
Q psy5309 488 NWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPF 567 (1618)
Q Consensus 488 ~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~ 567 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 302 --------------~~~ip--------------------i~~~--------------~~V~~~~GTG~V------~~--- 324 (967)
T 1wz2_A 302 --------------GDEVI--------------------ILPA--------------EFVDPDNATGVV------MS--- 324 (967)
T ss_dssp --------------SCEEE--------------------EEEC--------------SSCCSSSTTSCE------EE---
T ss_pred --------------CCceE--------------------EEec--------------ccccCCCCcccE------Ee---
Confidence 12244 6654 899999999999 99
Q ss_pred CCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccc
Q psy5309 568 PPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINC 647 (1618)
Q Consensus 568 ~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1618)
+|+|+ |+||.++.++.++.+++++| ||+.
T Consensus 325 -----~Pah~------------~~Dy~~~~~~~~~~~~~~k~------------------------------~l~~---- 353 (967)
T 1wz2_A 325 -----VPAHA------------PFDHVALEDLKRETEILEKY------------------------------DIDP---- 353 (967)
T ss_dssp -----CTTSC------------TTTTTTTSCCSCCSCCCCTT------------------------------CCCC----
T ss_pred -----ecCCC------------HHHHHHHHhhccchhHHHHc------------------------------CCch----
Confidence 99999 99999999887777888888 6543
Q ss_pred eeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHH
Q psy5309 648 VIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKK 727 (1618)
Q Consensus 648 ~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~ 727 (1618)
+++.+++++++|+++++|+++++.++++++|.+++|.+++++|++.+|.++|++|+|++|+|+|++|++||+.|+++
T Consensus 354 ---~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~i~~~ 430 (967)
T 1wz2_A 354 ---RIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKE 430 (967)
T ss_dssp ---CCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTTTHHH
T ss_pred ---hhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHHHHHH
Confidence 36677889999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-ccCccee
Q psy5309 728 IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-LCDQWYL 806 (1618)
Q Consensus 728 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-~~~QWfi 806 (1618)
|++.|++.+ ++.+.. .++||||| ..|..+ +++|||+
T Consensus 431 L~~~g~l~~---------~~~~~~-----------~p~~~R~g-----------------------~~~i~~~~~~qWFi 467 (967)
T 1wz2_A 431 MLEKGIAEI---------MYEFAE-----------KNVISRFG-----------------------NRAVIKIIHDQWFI 467 (967)
T ss_dssp HHHHTSEEE---------CCEESS-----------SCCBCSSS-----------------------SBCEECCCSSCEEE
T ss_pred HHhCCCceE---------EEecCC-----------CceECCCC-----------------------CEEEEeccCCccce
Confidence 999996521 222111 12677887 566666 6999999
Q ss_pred ecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhc
Q psy5309 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQG 886 (1618)
Q Consensus 807 ~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~ 886 (1618)
++++..||+++++++++++|+|+++++++.+||+|++||||||||+||||||+|+.|+|++++|+++|+|++++++++++
T Consensus 468 ~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~ 547 (967)
T 1wz2_A 468 DYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINK 547 (967)
T ss_dssp ESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHH
T ss_pred ecCchHHHHHHHHhhhccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHH
Confidence 99876899999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CccCCCCCccCCCCcCCCCCcceeEEecccC---C---CCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHH
Q psy5309 887 GTFRGENGNALNIKAEDLTPEVWDYVFFKAA---P---FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFF 960 (1618)
Q Consensus 887 ~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~---~---~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~ 960 (1618)
+.+ ..+++++++.++++|+||.+.. . +....+.+...+.++++.|++|||+|++++|+||+++|+.|.
T Consensus 548 --~~~----~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~ 621 (967)
T 1wz2_A 548 --LRQ----EGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFF 621 (967)
T ss_dssp --HHH----TTCCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHH
T ss_pred --HHH----hcCCChHHcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHH
Confidence 100 1235667888999999986410 0 000112455555566788999999999999999999987665
Q ss_pred HHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEcc
Q psy5309 961 IYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANG 1040 (1618)
Q Consensus 961 lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG 1040 (1618)
++.|.++| +
T Consensus 622 ~~~~~a~~---------------------------------------------------------~-------------- 630 (967)
T 1wz2_A 622 IFNHVAIF---------------------------------------------------------R-------------- 630 (967)
T ss_dssp HHHHHHHS---------------------------------------------------------C--------------
T ss_pred HHHHHHHc---------------------------------------------------------C--------------
Confidence 44333221 0
Q ss_pred ceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCC
Q psy5309 1041 HLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGS 1120 (1618)
Q Consensus 1041 ~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~ 1120 (1618)
T Consensus 631 -------------------------------------------------------------------------------- 630 (967)
T 1wz2_A 631 -------------------------------------------------------------------------------- 630 (967)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCc
Q psy5309 1121 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHV 1200 (1618)
Q Consensus 1121 ~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~ 1200 (1618)
T Consensus 631 -------------------------------------------------------------------------------- 630 (967)
T 1wz2_A 631 -------------------------------------------------------------------------------- 630 (967)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhc
Q psy5309 1201 AEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD 1280 (1618)
Q Consensus 1201 aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~ 1280 (1618)
..++|+.+++||||+++|+|||||+||||+|.+++++||||++||||++
T Consensus 631 -------------------------------~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~ 679 (967)
T 1wz2_A 631 -------------------------------EEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMS 679 (967)
T ss_dssp -------------------------------STTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------------cccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHh
Confidence 0023578889999999999999999999999999999999999999998
Q ss_pred cCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCc
Q psy5309 1281 SGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSF 1360 (1618)
Q Consensus 1281 ~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1618)
++++++|++||++.++++.+.++. ++++++++.. .. .+....+..
T Consensus 680 ~~~~~~d~~fs~~~~~~~~~~l~r------------------------------l~n~~~~~~~---~~--~~~~~~~~~ 724 (967)
T 1wz2_A 680 LAEHDSDFDWRRKEVGKLRKQIER------------------------------FYELISQFAE---YE--VKGNVELKD 724 (967)
T ss_dssp HCCTTCCEEECHHHHHHHHHHHHH------------------------------HHHHHHHHHS---SC--CCCCCCCCH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHH------------------------------HHHHHHHHhc---CC--CCCcccCCH
Confidence 889999999999988876655552 2233222211 10 111234567
Q ss_pred chHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHH
Q psy5309 1361 NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440 (1618)
Q Consensus 1361 ~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i 1440 (1618)
+|+|++++++.+++++.++|++|+|+.|++++++.+.+..|+|++.+++
T Consensus 725 ~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~------------------------------- 773 (967)
T 1wz2_A 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG------------------------------- 773 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccc-------------------------------
Confidence 8999999999999999999999999999998765777788999977641
Q ss_pred HHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCC
Q psy5309 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKK 1520 (1618)
Q Consensus 1441 ~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~ 1520 (1618)
+ .+ .+++++|+++|+.+++|||||+||+|||+|+.|+.+
T Consensus 774 ------------------------~--------~~---------~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~ 812 (967)
T 1wz2_A 774 ------------------------R--------DD---------EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE 812 (967)
T ss_dssp ------------------------C--------CC---------HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC
T ss_pred ------------------------h--------hH---------HHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC
Confidence 1 00 146678999999999999999999999999999878
Q ss_pred CceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCCCcccccCCceEEEEEcccCChhHH
Q psy5309 1521 GSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQS 1598 (1618)
Q Consensus 1521 ~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1598 (1618)
+||+.+.||+.++ .|+.++++++.+++++.++|+.+.++ + +..|.+++|+++ ++|+.
T Consensus 813 ~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~----~--------------~~~p~~~~i~~~---~~~~~ 871 (967)
T 1wz2_A 813 GFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVA----K--------------IENAKRAYIYTA---EDWKW 871 (967)
T ss_dssp SCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTS----C--------------CCCSBEEEECCC---TTTTT
T ss_pred CceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHh----C--------------CCCCCeEEEEEC---CHHHH
Confidence 8999999999873 58999999999999777777766531 1 134567777776 46776
Q ss_pred HHHHHHH
Q psy5309 1599 IVLTTMK 1605 (1618)
Q Consensus 1599 ~~~~~~~ 1605 (1618)
+.++.+.
T Consensus 872 ~~~~~~~ 878 (967)
T 1wz2_A 872 KVAEVVS 878 (967)
T ss_dssp TTHHHHT
T ss_pred HHHHHHH
Confidence 6665543
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-120 Score=1197.93 Aligned_cols=777 Identities=18% Similarity=0.228 Sum_probs=582.5
Q ss_pred cccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC
Q psy5309 5 GTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS 84 (1618)
Q Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1618)
.|-|+.+++++|++||++|+++++|++..+. +
T Consensus 13 ~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~------------------------------------------------~ 44 (917)
T 1ffy_A 13 DFPMRGGLPNKEPQIQEKWDAEDQYHKALEK------------------------------------------------N 44 (917)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTTHHHHHHHH------------------------------------------------T
T ss_pred CCCCCCChHHHhHHHHHHHHHCCCcccchhh------------------------------------------------c
Confidence 4568889999999999999999999886532 1
Q ss_pred CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCC
Q psy5309 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSE 164 (1618)
Q Consensus 85 ~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~ 164 (1618)
.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||..|++. |+.+
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~-------G~~~----- 112 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK-------GVDR----- 112 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH-------TCCS-----
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc-------CCCc-----
Confidence 2468899999999999999999999999999999999999999999999999999999999862 4431
Q ss_pred CCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccc
Q psy5309 165 DTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDW 244 (1618)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw 244 (1618)
..++.+++++.| ++|+.++++.|+++|++||+++||
T Consensus 113 ------------------------------------------~~~~~~~f~~~~--~~~~~~~~~~~~~~~~rlG~~~Dw 148 (917)
T 1ffy_A 113 ------------------------------------------KKMSTAEFREKC--KEFALEQIELQKKDFRRLGVRGDF 148 (917)
T ss_dssp ------------------------------------------TTTCHHHHHHHH--HHHHHHHHHHHHHHHHTTTCCSCT
T ss_pred ------------------------------------------hhCCHHHHHHHH--HHHHHHHHHHHHHHHHHhCeEEcc
Confidence 023456666665 699999999999999999999999
Q ss_pred cCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCcccccc
Q psy5309 245 RRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCC 324 (1618)
Q Consensus 245 ~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 324 (1618)
+++|.|+| |.|.+.++|+|.+|+++|+||+|.+||+|||.|+|+|||+||+|++..+++.|+ +|++.++ .. .
T Consensus 149 d~~~~T~d--~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v--~f~~~~~-~g---~ 220 (917)
T 1ffy_A 149 NDPYITLK--PEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYV--AFNVKDD-KG---V 220 (917)
T ss_dssp TSCEETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEEC--CBCCCSS-TT---G
T ss_pred CCCeEcCC--HHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCceEEE--EEEeccc-cc---c
Confidence 99999999 899999999999999999999999999999999999999999999988887764 4444321 00 0
Q ss_pred CCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEE
Q psy5309 325 LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVF 404 (1618)
Q Consensus 325 ~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~ 404 (1618)
++ ++.+++||||||||||||+||||||+..|+.++. .+ +.++++..+... +
T Consensus 221 ~~-~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~-~~-~~~i~a~~~~~~-~------------------------- 271 (917)
T 1ffy_A 221 VD-ADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNV-NG-EKYIIAEALSDA-V------------------------- 271 (917)
T ss_dssp GG-TTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCT-TT-TCCCCCHHHHHH-H-------------------------
T ss_pred cC-CCCeEEEEeCCcchhhhceEEEECCCCceEEEEe-CC-ceeehHHHHHHH-H-------------------------
Confidence 11 2579999999999999999999999999999854 22 233443332111 0
Q ss_pred EeccccccccccCCCchhhhHHH--HhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhh
Q psy5309 405 VCTERSARNMAYQGFTEVEGKIN--VLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRN 482 (1618)
Q Consensus 405 i~~~~~~~~~~~~g~~~~~a~~~--ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~ 482 (1618)
++..|+. +.+ ++.+++|..+. |..+.+++.
T Consensus 272 ---------~~~~~~~----~~~~~~~~~~~G~~l~--g~~~~~P~~--------------------------------- 303 (917)
T 1ffy_A 272 ---------AEALDWD----KASIKLEKEYTGKELE--WVVAQHPFL--------------------------------- 303 (917)
T ss_dssp ---------HTTTTCC----SSCCCCCCCCCTTTCT--TCCCBCCTT---------------------------------
T ss_pred ---------HHhcCcc----cceeeeeeeeeccccc--CCEEECCCC---------------------------------
Confidence 0111111 111 33444555444 444433332
Q ss_pred HhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeec
Q psy5309 483 FGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFF 562 (1618)
Q Consensus 483 ~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~ 562 (1618)
|..+| ++++ ++|+++.|||+|
T Consensus 304 -------------------~~~~p--------------------vi~~--------------~~V~~~~GTG~V------ 324 (917)
T 1ffy_A 304 -------------------DRESL--------------------VING--------------DHVTTDAGTGCV------ 324 (917)
T ss_dssp -------------------CCSBC--------------------CCCC--------------CSSCCSSSCSCC------
T ss_pred -------------------CCeee--------------------EEec--------------cccccCCCCcee------
Confidence 22355 4433 789999999999
Q ss_pred cCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCc
Q psy5309 563 KSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNA 642 (1618)
Q Consensus 563 ~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1618)
|+ +|+|+ ++||.++.+ | |++
T Consensus 325 ~~--------~Pah~------------~~D~~~~~~----------~------------------------------~L~ 344 (917)
T 1ffy_A 325 HT--------APGHG------------EDDYIVGQQ----------Y------------------------------ELP 344 (917)
T ss_dssp CB--------CTTSC------------SHHHHTTTS----------S------------------------------SCC
T ss_pred Ee--------CCCCC------------HHHHHHHHH----------c------------------------------CCC
Confidence 99 99999 999998877 4 442
Q ss_pred ccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHH
Q psy5309 643 LNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEV 720 (1618)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a 720 (1618)
. +.+| ++ +|.|+ .|+|+|++|++|
T Consensus 345 ~---------------~~~v--d~-------------------------------------~G~~~~~~~~~~G~~v~~A 370 (917)
T 1ffy_A 345 V---------------ISPI--DD-------------------------------------KGVFTEEGGQFEGMFYDKA 370 (917)
T ss_dssp C---------------CCCC--CS-------------------------------------SSCCCTTCSSCSSSCSSHH
T ss_pred e---------------eeeE--CC-------------------------------------CceeCCcccccCCcCHHHH
Confidence 1 1122 11 34444 588999999999
Q ss_pred HHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-
Q psy5309 721 KKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA- 799 (1618)
Q Consensus 721 ~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~- 799 (1618)
|++|+++|++.|++ ++.++++|+||||||+
T Consensus 371 ~~~Ii~~L~~~g~l-------------------------------------------------~~~~~~~hs~p~c~R~~ 401 (917)
T 1ffy_A 371 NKAVTDLLTEKGAL-------------------------------------------------LKLDFITHSYPHDWRTK 401 (917)
T ss_dssp HHTTGGGSSHHHHC-------------------------------------------------CCCEEEEEEEEEETTTC
T ss_pred HHHHHHHHHhCCCc-------------------------------------------------cccccccccCCEecCCC
Confidence 99999999999964 5667899999999997
Q ss_pred ------ccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcce
Q psy5309 800 ------LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTI 873 (1618)
Q Consensus 800 ------~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~i 873 (1618)
+++|||+++ +++|+++++++++++|+|+++++++.+||++++||||||||+||+|||+ |+|++ +..
T Consensus 402 ~pv~~r~t~QWFi~~--~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~---~~~~~---g~~ 473 (917)
T 1ffy_A 402 KPVIFRATPQWFASI--SKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPV---FYAEN---GEI 473 (917)
T ss_dssp CBCEEEEEEEEEECH--HHHHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCC---EECTT---SCE
T ss_pred CEEEEEeccceEeeH--HHHHHHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccce---eeCCC---CCE
Confidence 799999999 6899999999999999999999999999999999999999999999999 99974 222
Q ss_pred EeehhHHHH---Hhhc-Cc----------cCCC--CCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhh
Q psy5309 874 YMAYYTVAH---LLQG-GT----------FRGE--NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREF 937 (1618)
Q Consensus 874 y~~~~ti~~---~l~~-~~----------~~g~--~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1618)
.+.-.++.+ +.+. |. +.+. .....+...-...+|++|.||+|+..+...... ++.+
T Consensus 474 ~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~--------~~~~ 545 (917)
T 1ffy_A 474 IMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLET--------RPEL 545 (917)
T ss_dssp ECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTT--------STTC
T ss_pred ecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCC--------chhc
Confidence 222222222 2110 00 0000 000000011234568899999887532211000 1122
Q ss_pred ccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhh
Q psy5309 938 QYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFF 1017 (1618)
Q Consensus 938 ~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~ 1017 (1618)
.||+|+|++|+||+|+| ||+.++
T Consensus 546 --~~P~Dl~~~G~D~~r~w------f~~~l~------------------------------------------------- 568 (917)
T 1ffy_A 546 --SFPADMYLEGSDQYRGW------FNSSIT------------------------------------------------- 568 (917)
T ss_dssp --CSSBSEEEEEGGGGTTH------HHHHHH-------------------------------------------------
T ss_pred --CCCceEEEEEecccccH------HHHHHH-------------------------------------------------
Confidence 38999999999988882 222221
Q ss_pred hhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHh
Q psy5309 1018 IYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGIL 1097 (1618)
Q Consensus 1018 i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~ 1097 (1618)
. +
T Consensus 569 --------~---------------------------------------------------s------------------- 570 (917)
T 1ffy_A 569 --------T---------------------------------------------------S------------------- 570 (917)
T ss_dssp --------H---------------------------------------------------H-------------------
T ss_pred --------H---------------------------------------------------H-------------------
Confidence 0 0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q psy5309 1098 RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM 1177 (1618)
Q Consensus 1098 kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~ 1177 (1618)
.+
T Consensus 571 -----------------------------------------------------~~------------------------- 572 (917)
T 1ffy_A 571 -----------------------------------------------------VA------------------------- 572 (917)
T ss_dssp -----------------------------------------------------HH-------------------------
T ss_pred -----------------------------------------------------HH-------------------------
Confidence 00
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-ccccccccc
Q psy5309 1178 HRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSE 1256 (1618)
Q Consensus 1178 ~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSl 1256 (1618)
.. +..||+.+++||||+| +|+|||||+
T Consensus 573 -----------------------------~~-----------------------g~~Pfk~v~~hG~V~d~~G~KMSKSl 600 (917)
T 1ffy_A 573 -----------------------------TR-----------------------GVSPYKFLLSHGFVMDGEGKKMSKSL 600 (917)
T ss_dssp -----------------------------HH-----------------------SSCSBSEEEEECCEECTTSCCCCSSS
T ss_pred -----------------------------hh-----------------------CCCcccceeEeeeEEcCCCcCccccc
Confidence 00 1245799999999999 999999999
Q ss_pred CCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhh--hhhhcccCCCCcchhhHHHHHhhhhhhh
Q psy5309 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADG--MRLCLADSGDSVEDANFVESMADAGILR 1334 (1618)
Q Consensus 1257 GNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~--~~~~l~n~gnl~~~~~r~~~~~~~~~~~ 1334 (1618)
||||+|.++|++||||++|||+++ +++++|++||++.+++..+.++..+ +|+.++|+.++
T Consensus 601 GNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~----------------- 662 (917)
T 1ffy_A 601 GNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDF----------------- 662 (917)
T ss_dssp SCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTC-----------------
T ss_pred CCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------------
Confidence 999999999999999999999999 6999999999999988766665321 22222222111
Q ss_pred hhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhccc
Q psy5309 1335 LYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGG 1412 (1618)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~ 1412 (1618)
+......+...+..+|+|++++++++++++.++|++|+|++|++.++ +|+. ++|+|++..+
T Consensus 663 ------------~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~-~f~~~~l~~~Yl~~~k---- 725 (917)
T 1ffy_A 663 ------------NPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQ-NFINVELSNFYLDYGK---- 725 (917)
T ss_dssp ------------CHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHCCCCCCHHHHHH----
T ss_pred ------------CcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHhcc----
Confidence 10000011123467899999999999999999999999999999985 9986 7888886665
Q ss_pred chhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhh-hhhhHHHhhhhhhchHHHHH
Q psy5309 1413 MHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQA-ARDKYRELTAAEGGMHRTLV 1491 (1618)
Q Consensus 1413 ~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 1491 (1618)
+|+|+... +..|+ .++++|
T Consensus 726 ---------------------------------------------------~rl~~~~~~~~~r~---------~~~~~l 745 (917)
T 1ffy_A 726 ---------------------------------------------------DILYIEQRDSHIRR---------SMQTVL 745 (917)
T ss_dssp ---------------------------------------------------HHHTTSCTTCHHHH---------HHHHHH
T ss_pred ---------------------------------------------------hhhhccCCCcHHHH---------HHHHHH
Confidence 34443221 11121 467789
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHcCC--CCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5309 1492 LRFVEVQALLLCPVCPHVAEHVYQLLGK--KGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGK 1569 (1618)
Q Consensus 1492 ~~~l~~~~~llaPi~P~~aEeiw~~l~~--~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~ 1569 (1618)
+++++.+++|||||+||+|||+|+.|+. .+||+.+.||+.++.|+.+++.++.+++ +|..+.++++.+|++|.+
T Consensus 746 ~~~l~~l~~lLaP~~P~~aEeiw~~l~~~~~~sv~~~~wP~~~~~~~~l~~~~~~~~~----v~~~v~~~~~~~R~~~~i 821 (917)
T 1ffy_A 746 YQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMN----LRDDVNRALETARNEKVI 821 (917)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHTTSTTCSSSSGGGSCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHcccCCCCCeEecCCCCCCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999975 6799999999987667778777666666 999999999999999865
Q ss_pred ccC
Q psy5309 1570 KVG 1572 (1618)
Q Consensus 1570 ~~~ 1572 (1618)
+.+
T Consensus 822 ~~~ 824 (917)
T 1ffy_A 822 GKS 824 (917)
T ss_dssp SSG
T ss_pred CCC
Confidence 443
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-117 Score=1173.97 Aligned_cols=793 Identities=33% Similarity=0.588 Sum_probs=630.0
Q ss_pred hhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCC
Q psy5309 10 EYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDK 89 (1618)
Q Consensus 10 ~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1618)
-.+.++|++||++|+++++|++..+.+ .++++
T Consensus 4 ~~~~~~E~~~~~~W~~~~~f~~~~~~~------------------------------------------------~~~~~ 35 (810)
T 1wkb_A 4 LNFKAIEEKWQKRWLEAKIFEPNIRDK------------------------------------------------PKEKK 35 (810)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCGGGS------------------------------------------------CGGGE
T ss_pred CCHHHHHHHHHHHHHhCCCcccCchhc------------------------------------------------CCCCc
Confidence 357899999999999999999876531 23678
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ 169 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~ 169 (1618)
|+|++|||||||+|||||++|++++|+++||+||+||+|++++||||||+||+..|++++. |.
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~-----~~------------ 98 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN-----RD------------ 98 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHT-----TC------------
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcc-----cC------------
Confidence 9999999999999999999999999999999999999999999999999999999886421 00
Q ss_pred CCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCcee
Q psy5309 170 TDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249 (1618)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~ 249 (1618)
...++.+.+.+|++.++++++.+|++|++++.+.|+++|++||+++||+++|.
T Consensus 99 ---------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~ 151 (810)
T 1wkb_A 99 ---------------------------PKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFY 151 (810)
T ss_dssp ---------------------------HHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCB
T ss_pred ---------------------------chHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceE
Confidence 00011222345888888888889999999999999999999999999999999
Q ss_pred ecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCC
Q psy5309 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKP 329 (1618)
Q Consensus 250 T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 329 (1618)
|++.||.|.+.++|+|.+|+++|+||+|.++|+|||.|+|+|||+||++++.++++.|..++|++.+. .++
T Consensus 152 T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~---------~~~ 222 (810)
T 1wkb_A 152 TTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN---------GEV 222 (810)
T ss_dssp CSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSS---------CSC
T ss_pred ecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCC---------CCc
Confidence 99977889999999999999999999999999999999999999999999999999999999986321 123
Q ss_pred cEEEEeecCccccccCceEEeCCCCCceeecccCC---ccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEe
Q psy5309 330 VFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDS---KPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVC 406 (1618)
Q Consensus 330 ~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~---~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~ 406 (1618)
.+|+||||||||||||+||||||+..|+.+.. .+ .+.+|++..
T Consensus 223 ~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~-~~~~~~~~~i~~~~--------------------------------- 268 (810)
T 1wkb_A 223 IYLPAATLRPETVYGVTNMWVNPNATYVKAKV-RRKDKEETWIVSKE--------------------------------- 268 (810)
T ss_dssp CEEEEEESCGGGGGGCCEEEECTTSCEEEEEE-EETTEEEEEEEEHH---------------------------------
T ss_pred eEEEEEcCCchHhhhhhEEEECCCCcEEEEEe-cCCCcceeeeeHHH---------------------------------
Confidence 68999999999999999999999999998743 11 134444432
Q ss_pred ccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhh
Q psy5309 407 TERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGAS 486 (1618)
Q Consensus 407 ~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~ 486 (1618)
...++.+++ ...+++.+++|..+. |..+..+++
T Consensus 269 ---~~~~~~~~~-----~~~~~~~~~~G~~l~--g~~~~~P~~------------------------------------- 301 (810)
T 1wkb_A 269 ---AAYKLSFQD-----REIEVIEEFKGEKLI--GKYVRNPVS------------------------------------- 301 (810)
T ss_dssp ---HHHHHTTSS-----CEEEEEEECTTTTTT--TCEEECSSS-------------------------------------
T ss_pred ---HHHHHHhhh-----cceEEEEEEEchhhc--CCEEECCCC-------------------------------------
Confidence 222222221 012234445555555 666665544
Q ss_pred hhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCC
Q psy5309 487 LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAP 566 (1618)
Q Consensus 487 ~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~ 566 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 302 ---------------~~~ip--------------------i~~~--------------~~V~~~~GTG~V------~~-- 324 (810)
T 1wkb_A 302 ---------------GDEVI--------------------ILPA--------------EFVDPDNATGVV------MS-- 324 (810)
T ss_dssp ---------------CCEEE--------------------EEEC--------------TTSCTTSTTSCE------EE--
T ss_pred ---------------CCeeE--------------------EEec--------------CcccCCCCceeE------Ee--
Confidence 22245 5554 899999999999 99
Q ss_pred CCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCccccc
Q psy5309 567 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIN 646 (1618)
Q Consensus 567 ~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1618)
+|+|+ ++||.++.++.++++++++| |++.
T Consensus 325 ------~Pah~------------~~D~~~~~~~~~~~~~~~k~------------------------------~l~~--- 353 (810)
T 1wkb_A 325 ------VPAHA------------PFDHVALEDLKRETEILEKY------------------------------DIDP--- 353 (810)
T ss_dssp ------CTTTC------------HHHHHHHCCCSCCSCCCTTC------------------------------SCCC---
T ss_pred ------CCCCC------------HHHHHHHHhhccchhHHHHc------------------------------CCCh---
Confidence 99999 99999998877777788888 5532
Q ss_pred ceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHH
Q psy5309 647 CVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQK 726 (1618)
Q Consensus 647 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~ 726 (1618)
+++.+++++++|+++++|+++++.++++++|.++.|.+++++|++.+|.++|++|+|+.|+|+|+.|++||+.|++
T Consensus 354 ----~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~~~i~~ 429 (810)
T 1wkb_A 354 ----RIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAK 429 (810)
T ss_dssp ----CCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHHHHHHH
T ss_pred ----hhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhHHHHHH
Confidence 2455677889999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-ccCcce
Q psy5309 727 KIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-LCDQWY 805 (1618)
Q Consensus 727 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-~~~QWf 805 (1618)
+|++.|++. ..+.... .+++|||| ..|... +++|||
T Consensus 430 ~L~~~g~~~---------~~~~~~~-----------~~~~~r~g-----------------------~~vi~~~~~~qwF 466 (810)
T 1wkb_A 430 EMLEKGIAE---------IMYEFAE-----------KNVISRFG-----------------------NRAVIKIIHDQWF 466 (810)
T ss_dssp HHHTTTSEE---------EEEEESS-----------SCCBCTTS-----------------------CBCEEEEEEEEEE
T ss_pred HHHhCCCee---------eEEecCC-----------CCcCCCCC-----------------------CEEEEEecCCcee
Confidence 999999642 1121111 13677888 445555 699999
Q ss_pred eecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhh
Q psy5309 806 LDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQ 885 (1618)
Q Consensus 806 i~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~ 885 (1618)
+++++.+|++++++++++++|+|++.++++.+||++++||||||||+||+|||+|+.|.|++++|+++|+|++++.++++
T Consensus 467 ~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~ 546 (810)
T 1wkb_A 467 IDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHIN 546 (810)
T ss_dssp ECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHH
T ss_pred EecChHHHHHHHHhhhcccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHH
Confidence 99976679999999999999999999999999999999999999999999999988899999999999999999999985
Q ss_pred cCccCCCCCccCCCCcCCCCCcceeEEecccC---C---CCCCCCCChhhHHHHHHhhccccccceEeecccccccchhH
Q psy5309 886 GGTFRGENGNALNIKAEDLTPEVWDYVFFKAA---P---FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTF 959 (1618)
Q Consensus 886 ~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~---~---~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f 959 (1618)
+. .+ ..+++++++.++++||||.+.. . .....+.+...+.+.++.+++|||+|+|++|+||+++|+.|
T Consensus 547 ~~--~~----~~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~ 620 (810)
T 1wkb_A 547 KL--RQ----EGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTF 620 (810)
T ss_dssp HH--HH----TTCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHH
T ss_pred Hh--Hh----hcCCCHHHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHH
Confidence 20 00 1134567788899999975310 0 00011233334444467789999999999999999999988
Q ss_pred HHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEc
Q psy5309 960 FIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN 1039 (1618)
Q Consensus 960 ~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~h 1039 (1618)
.++.|.++| +. .++|+.+++|
T Consensus 621 ~~~~~~~~~---------------------------------------------------------~~--~~~pk~v~~~ 641 (810)
T 1wkb_A 621 FIFNHVAIF---------------------------------------------------------RE--EHWPKGIAVN 641 (810)
T ss_dssp HHHHHHHHS---------------------------------------------------------CG--GGSCCEEEEE
T ss_pred HHHHHHHHc---------------------------------------------------------Cc--cccccEEEEE
Confidence 877766664 21 1357999999
Q ss_pred cceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHHHHHhcccC
Q psy5309 1040 GHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKEILATQSTL 1116 (1618)
Q Consensus 1040 G~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~~l~~~~~~ 1116 (1618)
|||+.+|+|||||+||+|+|.+++++||+|++|||+++++++++|++|+++.++. .+++++|+++++.+. ..
T Consensus 642 G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-----~~ 716 (810)
T 1wkb_A 642 GFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEY-----EV 716 (810)
T ss_dssp CCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTC-----CC
T ss_pred eEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhc-----cC
Confidence 9999999999999999999999999999999999999888999999999987654 345556655554321 11
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcch-HHHHHHHHHHHHHhcCc
Q psy5309 1117 RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMH-RTLVLRFVEVQALLLCP 1195 (1618)
Q Consensus 1117 ~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~-~~~l~~~l~~l~~lLaP 1195 (1618)
+........|+|++++++.+++++.++|++|+|+.|+..+++++.+.+|+|++..++..+.. +.++.++++.+++||+|
T Consensus 717 ~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~~~~~~~~~l~~~l~~l~~lLaP 796 (810)
T 1wkb_A 717 KGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAP 796 (810)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhh
Confidence 11223456799999999999999999999999999999767899999999999987543334 67899999999999999
Q ss_pred CCCCchhHHHHHhC
Q psy5309 1196 VCPHVAEHVYQLLG 1209 (1618)
Q Consensus 1196 ~~P~~aEei~~~Lg 1209 (1618)
||||+|||||+.||
T Consensus 797 ~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 797 FTPHICEELWEKLG 810 (810)
T ss_dssp TSHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHhcC
Confidence 99999999999986
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-115 Score=1139.72 Aligned_cols=714 Identities=21% Similarity=0.295 Sum_probs=560.8
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|.-.+.++|++||++|++ ++|+++.+. ++
T Consensus 5 ~~y~~~~~E~~~~~~W~~-~~f~~~~~~--------------------------------------------------~~ 33 (862)
T 1gax_A 5 KAYDPKSVEPKWAEKWAK-NPFVANPKS--------------------------------------------------GK 33 (862)
T ss_dssp SSCCGGGTHHHHHHHHHH-SCCCCCTTC--------------------------------------------------CS
T ss_pred cCCChHHHHHHHHHHHHh-CCCccCcCC--------------------------------------------------CC
Confidence 344678899999999999 999887532 36
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||..+++. +...|+.+
T Consensus 34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~---l~~~g~~~-------- 102 (862)
T 1gax_A 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERL---LLKEGKTR-------- 102 (862)
T ss_dssp CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTT---TTTTTSCC--------
T ss_pred CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHH---HHHcCCCh--------
Confidence 7899999999999999999999999999999999999999999999999999999888752 11223221
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+++|+ +++++. |++|++++.+.++++|++||+++||+++
T Consensus 103 -------------------------------------~~~~~--~~f~~~--~~~~~~~~~~~~~~q~~rlG~s~Dw~r~ 141 (862)
T 1gax_A 103 -------------------------------------HDLGR--EKFLER--VWQWKEESGGTILKQLKRLGASADWSRE 141 (862)
T ss_dssp -------------------------------------SCCCT--THHHHH--HHHHHHHHHHHHHHHHHHTTCCCCGGGC
T ss_pred -------------------------------------HHcCH--HHHHHH--HHHHHHHHHHHHHHHHHHhCccccCCCC
Confidence 01232 223332 5899999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCC
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDS 327 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 327 (1618)
|+|+| |.|.++|+|+|.+|+++|+||+|.++|+|||.|+|+|||+||++++..++..| ++|++. +
T Consensus 142 ~~T~d--~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~--v~f~~~-----------~ 206 (862)
T 1gax_A 142 AFTMD--EKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYT--LRYEVE-----------G 206 (862)
T ss_dssp EETTS--HHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEE--EECCCS-----------S
T ss_pred cccCC--HHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccccccccceEEE--EEEEec-----------C
Confidence 99999 88999999999999999999999999999999999999999999887665443 444431 1
Q ss_pred CCcEEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEe
Q psy5309 328 KPVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVC 406 (1618)
Q Consensus 328 ~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~ 406 (1618)
+ .+|+|||||||||+||+||||||++ +|..+ .|+.
T Consensus 207 ~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l---~G~~---------------------------------------- 242 (862)
T 1gax_A 207 G-GFIEIATVRPETVFADQAIAVHPEDERYRHL---LGKR---------------------------------------- 242 (862)
T ss_dssp S-CCCEEEESCSGGGTTCCCEEECSSCCTTCSC---TTCC----------------------------------------
T ss_pred C-CEEEEEeCCccccccceEEEECCCccHHHHH---cCCE----------------------------------------
Confidence 1 5899999999999999999999997 34322 1111
Q ss_pred ccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhh
Q psy5309 407 TERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGAS 486 (1618)
Q Consensus 407 ~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~ 486 (1618)
+..+++
T Consensus 243 -------------------------------------~~~P~~------------------------------------- 248 (862)
T 1gax_A 243 -------------------------------------ARIPLT------------------------------------- 248 (862)
T ss_dssp -------------------------------------CBCTTC-------------------------------------
T ss_pred -------------------------------------EECCCC-------------------------------------
Confidence 111111
Q ss_pred hhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCC
Q psy5309 487 LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAP 566 (1618)
Q Consensus 487 ~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~ 566 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 249 ---------------~~~ip--------------------ii~~--------------~~V~~~~GTG~V------~~-- 271 (862)
T 1gax_A 249 ---------------EVWIP--------------------ILAD--------------PAVEKDFGTGAL------KV-- 271 (862)
T ss_dssp ---------------CCBCC--------------------EEEC--------------TTCCTTSSSSEE------EC--
T ss_pred ---------------CCeee--------------------EEec--------------cccccCCCCcce------Ee--
Confidence 22366 5654 789999999999 99
Q ss_pred CCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCccccc
Q psy5309 567 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIN 646 (1618)
Q Consensus 567 ~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1618)
+|+|+ |+||.++.+ | |++
T Consensus 272 ------~Pahd------------~~D~~~~~~----------~------------------------------~L~---- 289 (862)
T 1gax_A 272 ------TPAHD------------PLDYEIGER----------H------------------------------GLK---- 289 (862)
T ss_dssp ------CGGGC------------HHHHHHHHH----------T------------------------------TCC----
T ss_pred ------cCCCC------------chHHHHHHH----------c------------------------------CCC----
Confidence 99999 999998876 4 331
Q ss_pred ceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--e--cccCCcchHHHHH
Q psy5309 647 CVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--V--GEFKGKKVQEVKK 722 (1618)
Q Consensus 647 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~--~~~~G~~v~~a~~ 722 (1618)
.+++|+. +|+|+ + |+|+|+++++||+
T Consensus 290 -----------~~~~id~---------------------------------------~G~~~~~~~~g~~~Gl~~~~a~~ 319 (862)
T 1gax_A 290 -----------PVSVINL---------------------------------------EGRMEGERVPEALRGLDRFEARR 319 (862)
T ss_dssp -----------CCCSBCT---------------------------------------TSBBCSSSSCTTTSSSBSSHHHH
T ss_pred -----------ccceeCC---------------------------------------CCccccccCCcccCCcCHHHHHH
Confidence 2333321 35554 4 8899999999999
Q ss_pred HHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe---
Q psy5309 723 LLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA--- 799 (1618)
Q Consensus 723 ~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~--- 799 (1618)
+|+++|++.|++ ++.+++.|+||||||+
T Consensus 320 ~iv~~L~~~g~l-------------------------------------------------~~~~~~~h~~p~c~R~~~~ 350 (862)
T 1gax_A 320 KAVELFREAGHL-------------------------------------------------VKEEDYTIALATCSRCGTP 350 (862)
T ss_dssp HHHHHHHTTTCE-------------------------------------------------EEEEEEEECCEEETTTCSB
T ss_pred HHHHHHHhCCCe-------------------------------------------------eeeccccccCCeecCCCCe
Confidence 999999999965 4567889999999997
Q ss_pred ----ccCcceeecCCchHHHHHHHHHh--cccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcce
Q psy5309 800 ----LCDQWYLDYGEPTWKAAAEQCLA--NMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTI 873 (1618)
Q Consensus 800 ----~~~QWfi~~~~~~~k~~~~~~i~--~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~i 873 (1618)
+++|||+++ ++++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+ |+|++| +++
T Consensus 351 i~~~~~~qWFv~~--~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~---w~~~~~--~~i 423 (862)
T 1gax_A 351 IEYAIFPQWWLRM--RPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPA---WYCEDC--QAV 423 (862)
T ss_dssp CCEEECCEEEECH--HHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCC---EEETTT--CCE
T ss_pred EEEEecceEEEEh--HHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCc---eecCCC--CEE
Confidence 799999999 699999999995 6999999999999999999999999999999999999 999854 679
Q ss_pred EeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeeccccc
Q psy5309 874 YMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLI 953 (1618)
Q Consensus 874 y~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~ 953 (1618)
||+... ++..... . ...++.......+|++|+||+|+..+-...+.+.+ .+.+++|||+|++++|+|++
T Consensus 424 ~v~~~~--~l~~~~~---~-~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~-----~~~~~~~~P~d~~v~G~Dii 492 (862)
T 1gax_A 424 NVPRPE--RYLEDPT---S-CEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEE-----TEDLKAFYPGDVLVTGYDIL 492 (862)
T ss_dssp ECCCGG--GTTCCCC---S-CTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSC-----CHHHHHSCSBSCEEEEGGGT
T ss_pred EEeccc--cccccch---h-hhhcCchheecCCcccceeeccCCcchhhccCCCc-----hHHHHhhCCceEEecCcccc
Confidence 988742 1221100 0 01111112345689999999998633223333322 24688999999999999988
Q ss_pred ccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcC
Q psy5309 954 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWP 1033 (1618)
Q Consensus 954 ~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~p 1033 (1618)
++|... +
T Consensus 493 ~~W~a~-------~------------------------------------------------------------------ 499 (862)
T 1gax_A 493 FLWVSR-------M------------------------------------------------------------------ 499 (862)
T ss_dssp TTTHHH-------H------------------------------------------------------------------
T ss_pred ccHHHH-------H------------------------------------------------------------------
Confidence 772000 0
Q ss_pred cEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhc
Q psy5309 1034 RGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQ 1113 (1618)
Q Consensus 1034 k~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~ 1113 (1618)
+
T Consensus 500 ----------------------------------------------------------------------------~--- 500 (862)
T 1gax_A 500 ----------------------------------------------------------------------------E--- 500 (862)
T ss_dssp ----------------------------------------------------------------------------H---
T ss_pred ----------------------------------------------------------------------------H---
Confidence 0
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhc
Q psy5309 1114 STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLL 1193 (1618)
Q Consensus 1114 ~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lL 1193 (1618)
+..
T Consensus 501 -------------------------------------------~~~---------------------------------- 503 (862)
T 1gax_A 501 -------------------------------------------VSG---------------------------------- 503 (862)
T ss_dssp -------------------------------------------HHH----------------------------------
T ss_pred -------------------------------------------HHH----------------------------------
Confidence 000
Q ss_pred CcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcc
Q psy5309 1194 CPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSAD 1272 (1618)
Q Consensus 1194 aP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD 1272 (1618)
.... +..|++.+++||+++| +|+|||||+||||+|.++|++||||
T Consensus 504 -----------~~~~-----------------------g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaD 549 (862)
T 1gax_A 504 -----------YHFM-----------------------GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGAD 549 (862)
T ss_dssp -----------HHHS-----------------------SSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHH
T ss_pred -----------HHhc-----------------------CCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChH
Confidence 0000 1245799999999998 9999999999999999999999999
Q ss_pred eeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhccccc
Q psy5309 1273 GMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTL 1352 (1618)
Q Consensus 1273 ~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1352 (1618)
+|||||++.+++++|++||++.+++..+.+|+ ++|+.+|+...+++..+.
T Consensus 550 alR~~ll~~~~~~~D~~fs~~~l~~~~~f~nk------------------------------l~N~~rf~~~~~~~~~~~ 599 (862)
T 1gax_A 550 ALRFALIYLATGGQDIRLDLRWLEMARNFANK------------------------------LYNAARFVLLSREGFQAK 599 (862)
T ss_dssp HHHHHHHHHCCTTCCEECCHHHHHHHHHHHHH------------------------------HHHHHHHHHHHSSSCCCC
T ss_pred HHHHHHHhcCCCCCCCccCHHHHHHHHHHHHH------------------------------HHHHHHHHHhcccCCCCc
Confidence 99999999889999999999998886655552 233334443333332111
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhc
Q psy5309 1353 RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLC 1430 (1618)
Q Consensus 1353 ~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~ 1430 (1618)
...+...|+|+++++++++++++++|++|+|+.|+++++ +|+ .++|+|++.+++
T Consensus 600 --~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~-~f~~~~~~n~Yie~~k~--------------------- 655 (862)
T 1gax_A 600 --EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVY-ELVWSEFCDWYLEAAKP--------------------- 655 (862)
T ss_dssp --BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHTTTTHHHHHHH---------------------
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHhhHHHHHHcch---------------------
Confidence 123567899999999999999999999999999999985 998 488888877652
Q ss_pred CcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHH
Q psy5309 1431 PVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVA 1510 (1618)
Q Consensus 1431 P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~a 1510 (1618)
|++.+ + ..++++|.++|+.+++|||||+||+|
T Consensus 656 ----------------------------------~l~~~-----~---------~~~~~~l~~~l~~~~~lL~P~~P~~a 687 (862)
T 1gax_A 656 ----------------------------------ALKAG-----N---------AHTLRTLEEVLAVLLKLLHPMMPFLT 687 (862)
T ss_dssp ----------------------------------HHHTT-----B---------HHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred ----------------------------------hhhcc-----H---------HHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 32211 0 14567889999999999999999999
Q ss_pred HHHHHHcCCCCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1511 EHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1511 Eeiw~~l~~~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
||+|+.|+..+||+.+.||+.+..|..++++++.+++++.++|+.+.+
T Consensus 688 Eeiw~~L~~~~sv~~~~wP~~~~~d~~~~~~~~~~~~v~~~~r~~r~~ 735 (862)
T 1gax_A 688 SELYQALTGKEELALEAWPEPGGRDEEAERAFEALKQAVTAVRALKAE 735 (862)
T ss_dssp HHHHHHHHCCSCGGGSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEecCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999976789999999998766899999999999998888887765
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-109 Score=1094.93 Aligned_cols=739 Identities=19% Similarity=0.260 Sum_probs=555.1
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|+.+++++|++||++|+++++|++..+.+ .++
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~------------------------------------------------~~~ 37 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENR------------------------------------------------KGG 37 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHT------------------------------------------------TTS
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhc------------------------------------------------CCC
Confidence 66788999999999999999998875421 246
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|++++|||||||.|||||++|++++|+++||+||+||+|++++||||||+|||..|++. .|+.+
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~------l~~~~-------- 103 (821)
T 1ile_A 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK------LGLKS-------- 103 (821)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHH------TTCCS--------
T ss_pred CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHH------hcccc--------
Confidence 8899999999999999999999999999999999999999999999999999999999862 23221
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+ +..+++| .+++++. |++|++++.+.|+++|++||+++||+++
T Consensus 104 ---------------------~------------~~~~~~g--~~~f~~~--~~~~~~~~~~~~~~~~~~lg~~~dwd~~ 146 (821)
T 1ile_A 104 ---------------------K------------REIEAYG--IERFNQA--CRESVFTYEKEWEAFTERIAYWVDLEDA 146 (821)
T ss_dssp ---------------------H------------HHHHHHC--HHHHHHH--HHHHTTTTHHHHTTHHHHTTCCCEEEEE
T ss_pred ---------------------c------------chHhhcC--HHHHHHH--HHHHHHHHHHHHHHHHHHhCCeEccCCC
Confidence 0 0112233 3444444 4799999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhc--cCCCCCCeeEEEEEEeeccCCccccccC
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRA--SGEGVGPQEYTLIKMRLVKPYPAKLCCL 325 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 325 (1618)
|.|+| |.|.+.++|+|.+|+++|+||+|.++|+|||.|+|+|||+||. +.+..+++.| ++|++.+..+.
T Consensus 147 ~~T~d--~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~--v~f~~~~~~~~----- 217 (821)
T 1ile_A 147 YATLE--PTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVY--VRFPLKEPKKL----- 217 (821)
T ss_dssp EETTS--HHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEE--EEEEBSSGGGG-----
T ss_pred eEECC--HHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEE--EEEEecCCccc-----
Confidence 99999 8899999999999999999999999999999999999999995 5566666665 55554321000
Q ss_pred CCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 326 DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 326 ~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
...+.+|+||||||||||||+||||||+..|+.+.. +++.+|++...... +.+
T Consensus 218 ~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~--~~~~~i~a~~~~~~-~~~------------------------ 270 (821)
T 1ile_A 218 GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV--GDEALILEEGLGRK-LLG------------------------ 270 (821)
T ss_dssp TCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEE--TTEEEEEETTHHHH-HTC------------------------
T ss_pred CCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEc--CCcEEEehHHHHHH-HHh------------------------
Confidence 113579999999999999999999999999999864 34455655442211 000
Q ss_pred eccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhh
Q psy5309 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGA 485 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~ 485 (1618)
+ ..+++.+++|..+. |..+.++++ ++
T Consensus 271 -----------~-------~~~~~~~~~G~~l~--g~~~~~p~~---~~------------------------------- 296 (821)
T 1ile_A 271 -----------E-------GTQVLKTFPGKALE--GLPYTPPYP---QA------------------------------- 296 (821)
T ss_dssp -----------T-------TSCEEEEECHHHHT--TCBBCCSSC---CC-------------------------------
T ss_pred -----------h-------CcEEEEEechHHhc--CCEEEcCCc---cc-------------------------------
Confidence 0 11233344444444 333333222 00
Q ss_pred hhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCC
Q psy5309 486 SLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSA 565 (1618)
Q Consensus 486 ~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~ 565 (1618)
+ |..+| ++++ ++|+++.|||+| |+
T Consensus 297 ----------~-----~~~~p--------------------i~~~--------------~~V~~~~GTG~V------~~- 320 (821)
T 1ile_A 297 ----------L-----EKGYF--------------------VVLA--------------DYVSQEDGTGIV------HQ- 320 (821)
T ss_dssp ----------C-----SSCSB--------------------EEEC--------------TTCCSSSSCSCE------EC-
T ss_pred ----------C-----CCEEE--------------------EEec--------------CcCccCCCCcce------Ee-
Confidence 0 22355 5554 799999999999 99
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 645 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1618)
+|+|+ ++||+++.+ | |++
T Consensus 321 -------~Pah~------------~~D~~~~~~----------~------------------------------~l~--- 338 (821)
T 1ile_A 321 -------APAFG------------AEDLETARV----------Y------------------------------GLP--- 338 (821)
T ss_dssp -------CTTSC------------HHHHHHHHH----------T------------------------------TCC---
T ss_pred -------cCCCC------------HHHHHHHHH----------c------------------------------CCC---
Confidence 99999 999998876 4 432
Q ss_pred cceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee-ecccCCcchHHHHHHH
Q psy5309 646 NCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML-VGEFKGKKVQEVKKLL 724 (1618)
Q Consensus 646 ~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~-~~~~~G~~v~~a~~~i 724 (1618)
.+.+|+ . +|+|+ .| |+|+.+++||++|
T Consensus 339 ------------~~~~id--~-------------------------------------~G~~~~~~-~~G~~~~~a~~~i 366 (821)
T 1ile_A 339 ------------LLKTVD--E-------------------------------------EGKLLVEP-FKGLYFREANRAI 366 (821)
T ss_dssp ------------CCCCBC--T-------------------------------------TSBBCSGG-GTTCBHHHHHHHH
T ss_pred ------------cceeEC--C-------------------------------------CCcCcccC-cCCCCHHHHHHHH
Confidence 122232 1 34444 35 9999999999999
Q ss_pred HHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-----
Q psy5309 725 QKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA----- 799 (1618)
Q Consensus 725 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~----- 799 (1618)
+++|++.|++ ++.++|+|+||||||+
T Consensus 367 ~~~L~~~g~~-------------------------------------------------~~~~~~~h~~p~c~r~~~~~~ 397 (821)
T 1ile_A 367 LRDLRGRGLL-------------------------------------------------FKEESYLHSYPHCWRCSTPLM 397 (821)
T ss_dssp HHHHHHTTCE-------------------------------------------------EEEEEEEEEEEBCSSSCCBCE
T ss_pred HHHHHhCCCe-------------------------------------------------eeeecccccCCEecCCCCEEE
Confidence 9999999964 4567889999999987
Q ss_pred --ccCcceeecCCchHHHHHHHHHhcccccChHHH-HHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEee
Q psy5309 800 --LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR-RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA 876 (1618)
Q Consensus 800 --~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k-~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~ 876 (1618)
+++|||+++ ++|++++++++++++|+|++.+ +++.+||++++||||||||+||+|||+ |+|++|+. ++ .
T Consensus 398 ~~~~~qWF~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~---~~~~~~~~--~~-v 469 (821)
T 1ile_A 398 YYATESWFIKN--TLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPI---WVCQACGK--EE-A 469 (821)
T ss_dssp EEECCEEEECG--GGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCE---EEESSSSC--CE-E
T ss_pred EEecchhhhch--HHHHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeE---EEecCCCc--EE-e
Confidence 799999999 6899999999999999999995 599999999999999999999999999 99987642 22 2
Q ss_pred hhHHHHHhhcC-ccC-C-CCC-----ccC-----CCCcCCCCCcceeEEecccCC-CCCCCCCChhhHHHHHHhhccccc
Q psy5309 877 YYTVAHLLQGG-TFR-G-ENG-----NAL-----NIKAEDLTPEVWDYVFFKAAP-FPPKCRVPKAKLDIMRREFQYWYP 942 (1618)
Q Consensus 877 ~~ti~~~l~~~-~~~-g-~~~-----~~l-----~~~~~~l~~~~~d~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~w~p 942 (1618)
+++++.+.+.+ +.. | ... +.. ...+....++++|+||+|+.. +. ..+.+.++ ++.|++|||
T Consensus 470 i~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~-~~~~p~~~----~~~f~~~~P 544 (821)
T 1ile_A 470 IGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFA-SLHYPFEH----EEVFRESFP 544 (821)
T ss_dssp CCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHH-TTTTTTSC----HHHHHHHSS
T ss_pred eCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHh-hcCCCccc----hHHHhhcCC
Confidence 23344443211 000 0 000 000 012334567899999998742 11 11222221 345889999
Q ss_pred cceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhh
Q psy5309 943 VDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHT 1022 (1618)
Q Consensus 943 ~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~ 1022 (1618)
+|++++|+||+|+|.... + +.+.
T Consensus 545 ~dl~~~G~D~~r~w~~~~------~---------------------------------------------------~~~~ 567 (821)
T 1ile_A 545 ADFIAEGIDQTRGWFNSL------H---------------------------------------------------QLGV 567 (821)
T ss_dssp BSBEEEEGGGGGTHHHHH------H---------------------------------------------------HHHH
T ss_pred cccccchhhhhccHHHHH------H---------------------------------------------------HHHH
Confidence 999999999999852221 1 1112
Q ss_pred hccCCCCCCcCcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH----HHh
Q psy5309 1023 AIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA----GIL 1097 (1618)
Q Consensus 1023 ~~~p~~~~~~pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~----~~~ 1097 (1618)
++++.. .|+++++||+++ .+|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+.. .++
T Consensus 568 ~~~~~~---pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~ 644 (821)
T 1ile_A 568 MLFGSI---AFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFL 644 (821)
T ss_dssp HHHSSC---SBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHH
T ss_pred HhcCCC---CcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHH
Confidence 222322 279999999999 699999999999999999999999999999999998999999999988654 568
Q ss_pred hHHHHHHHHHHHHHhcccCC-C---CCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHh
Q psy5309 1098 RLYTFIEWVKEILATQSTLR-T---GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELT 1171 (1618)
Q Consensus 1098 kl~N~~~~l~~~l~~~~~~~-~---~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~ 1171 (1618)
+++|+++|+..+.+..+..+ . .......|+|++++++.+++++.++|++|+|++|++. ++++. +.+|+|++..
T Consensus 645 kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~-l~~f~~~~~~n~Yl~~~ 723 (821)
T 1ile_A 645 TLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARA-LRDFVVEDLSQWYVRRN 723 (821)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHSSTTTHHHH
T ss_pred HHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 99999988764332211111 0 1234567999999999999999999999999999998 56666 7899999987
Q ss_pred cc--c-------CcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhh-hhhhcccCCCC
Q psy5309 1172 AA--E-------GGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFI-YIHTAIWGDEP 1232 (1618)
Q Consensus 1172 k~--~-------~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~-s~~~~~~p~~~ 1232 (1618)
++ + ....+.++.++++.+++||+|||||+|||||+.||.... .--. |+|.+.||...
T Consensus 724 k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~----~~~~~sv~~~~~P~~~ 790 (821)
T 1ile_A 724 RRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVR----LEAKESVHLADWPEAD 790 (821)
T ss_dssp HHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTS----TTSCSSGGGSCCCCCC
T ss_pred hhhcccCCCcHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhcccccc----CCCCCceEeecCCCCC
Confidence 64 1 123457789999999999999999999999999986310 0012 56777887643
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-95 Score=947.77 Aligned_cols=687 Identities=21% Similarity=0.316 Sum_probs=462.8
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|+-.+.++|++||++|+++++|++..+. ++
T Consensus 23 ~~y~~~~iE~kw~~~W~~~~~f~~~~~~--------------------------------------------------~~ 52 (880)
T 4arc_A 23 EQYRPEEIESKVQLHWDEKRTFEVTEDE--------------------------------------------------SK 52 (880)
T ss_dssp SSCCHHHHHHHHHHHHHHTTTTCCCCCT--------------------------------------------------TS
T ss_pred ccCChHHHHHHHHHHHHhcCCcccCCcC--------------------------------------------------CC
Confidence 3445689999999999999999876532 36
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+++.|||||||+|||||+++++++|+++||+||+||+|++++||||||+|||..|.+ .|+.
T Consensus 53 ~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~-------~g~~--------- 116 (880)
T 4arc_A 53 EKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVK-------NNTA--------- 116 (880)
T ss_dssp CEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHH-------TTSC---------
T ss_pred CCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHH-------cCCC---------
Confidence 789999999999999999999999999999999999999999999999999999988764 1211
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+.+|++++++.++++|++||+++||+++
T Consensus 117 ----------------------------------------------------p~~~~~~~i~~~~~~l~~LGis~Dw~~~ 144 (880)
T 4arc_A 117 ----------------------------------------------------PAPWTYDNIAYMKNQLKMLGFGYDWSRE 144 (880)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHTTCCCCGGGC
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHHhCCCcCCCCC
Confidence 3456777788999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCC------CCCCeeEEEEEEeeccCCccc
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGE------GVGPQEYTLIKMRLVKPYPAK 321 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~------~~~~~~y~~~~~~~~~~~~~~ 321 (1618)
|.|++ |.|.+.++|+|.+|+++|+||++.++|+|||.|+|+|||+|+..+. .+...+...+.|++.. |...
T Consensus 145 ~~T~d--~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~-y~~~ 221 (880)
T 4arc_A 145 LATCT--PEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITA-YADE 221 (880)
T ss_dssp EETTS--HHHHHHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGG-GHHH
T ss_pred EEcCC--HHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeech-hHHH
Confidence 99999 8899999999999999999999999999999999999999886531 1111112233343321 1000
Q ss_pred c----c---------------------------cCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEE
Q psy5309 322 L----C---------------------------CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLV 370 (1618)
Q Consensus 322 ~----~---------------------------~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv 370 (1618)
+ . .+.+++.+|+|||||||||+|++||||||++.|+......+.. +
T Consensus 222 Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~---~ 298 (880)
T 4arc_A 222 LLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPE---L 298 (880)
T ss_dssp HHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHH---H
T ss_pred HHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHH---H
Confidence 0 0 0123457899999999999999999999999877642201100 0
Q ss_pred ecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEecccc
Q psy5309 371 AATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCD 450 (1618)
Q Consensus 371 ~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~ 450 (1618)
.+.+ .+ ....+. ....+...+..+.. .|..+..+++
T Consensus 299 ~~~~-~~------------------------------------~~~~~~-----~~~~~~~~~~~g~~-~g~~~~~P~~- 334 (880)
T 4arc_A 299 AAFI-DE------------------------------------CRNTKV-----AEAEMATMEKKGVD-TGFKAVHPLT- 334 (880)
T ss_dssp HHHH-TC---------------------------------------------------------CEEE-EEEEEECTTT-
T ss_pred HHHH-HH------------------------------------HhccCc-----hhhhhccceeeccc-cCcEEecCCC-
Confidence 0000 00 000000 00000001111111 2334443333
Q ss_pred ceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeec
Q psy5309 451 QWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAH 530 (1618)
Q Consensus 451 QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~ 530 (1618)
|..|| ++.+
T Consensus 335 ---------------------------------------------------~~~ip--------------------i~~~ 343 (880)
T 4arc_A 335 ---------------------------------------------------GEEIP--------------------VWAA 343 (880)
T ss_dssp ---------------------------------------------------CCEEE--------------------EEEE
T ss_pred ---------------------------------------------------CCEeE--------------------EEEe
Confidence 33456 4443
Q ss_pred cccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhH
Q psy5309 531 LLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWL 610 (1618)
Q Consensus 531 ~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~ 610 (1618)
++|+++.|||.| |+ +|+|+ +.||.++.+ |
T Consensus 344 --------------~yV~~~~GTGaV------~~--------~Pahd------------~~D~~~~~~----------~- 372 (880)
T 4arc_A 344 --------------NFVLMEYGTGAV------MA--------VPGHD------------QRDYEFASK----------Y- 372 (880)
T ss_dssp --------------TTSCSSSTTSEE------EE--------CTTTC------------HHHHHHHHH----------H-
T ss_pred --------------CccccCCCCceE------EE--------ccCCC------------HHHHHHHHH----------c-
Confidence 789999999999 99 99999 999987765 6
Q ss_pred hhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHH
Q psy5309 611 IESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKL 690 (1618)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~ 690 (1618)
|++ .+++|+..+ |.-. ...
T Consensus 373 -----------------------------~Lp---------------i~~vi~~~~-~~~~-----------~~~----- 391 (880)
T 4arc_A 373 -----------------------------GLN---------------IKPVILAAD-GSEP-----------DLS----- 391 (880)
T ss_dssp -----------------------------TCC---------------CCCCBCCTT-SCCC-----------CCS-----
T ss_pred -----------------------------CCC---------------ceEeeccCc-cccc-----------ccc-----
Confidence 332 123332110 0000 000
Q ss_pred HHHHHHHHhhcccceeee-ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCC
Q psy5309 691 QEAKELVYLKGFYDGIML-VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDS 769 (1618)
Q Consensus 691 ~~~~~~~~~~~~~~G~~~-~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~ 769 (1618)
+.+|. .+|++. .|+|.|+++++||++|+++|++.|+..+
T Consensus 392 ----~~~~~---~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~--------------------------------- 431 (880)
T 4arc_A 392 ----QQALT---EKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGER--------------------------------- 431 (880)
T ss_dssp ----SSCCC---SCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEE---------------------------------
T ss_pred ----ccccc---CCceeecCcccCCCCHHHHHHHHHHHHHHcCCcce---------------------------------
Confidence 00111 157765 7899999999999999999999995200
Q ss_pred chhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecc
Q psy5309 770 PDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSR 849 (1618)
Q Consensus 770 g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISR 849 (1618)
+ +++ +++||||||
T Consensus 432 ------------------------~-----------v~y--------------------------------rlrDW~iSR 444 (880)
T 4arc_A 432 ------------------------K-----------VNY--------------------------------RLRDWGVSR 444 (880)
T ss_dssp ------------------------E-----------EEE--------------------------------SCCCEECEE
T ss_pred ------------------------e-----------EEE--------------------------------Ecccceeee
Confidence 0 111 479999999
Q ss_pred cCCCCcccCCCccccccccCCcceEeehhHHHHHhhcC-ccCCCCCccC-----------CCCcCCCCCcceeEEecccC
Q psy5309 850 TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGG-TFRGENGNAL-----------NIKAEDLTPEVWDYVFFKAA 917 (1618)
Q Consensus 850 qr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~-~~~g~~~~~l-----------~~~~~~l~~~~~d~~f~~~~ 917 (1618)
|||||+|||+ |+|++|+ .+.+....+...+... ...|. ++++ +..+....+|++|.||+|+-
T Consensus 445 QRyWG~PIPi---~~c~~cg--~v~v~~~~Lpv~lp~~~~~~~~-g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSsw 518 (880)
T 4arc_A 445 QRYWGAPIPM---VTLEDGT--VMPTPDDQLPVILPEDVVMDGI-TSPIKADPEWAKTTVNGMPALRETDTFDTFMESSW 518 (880)
T ss_dssp SCSSSCBCCE---EEETTSC--EEECCGGGCSCCCCSSCCCCSS-SCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGT
T ss_pred eeccCCcceE---EEECCCC--eEeCChHHCccccchhcccCCC-CCchHhCccceeeccCCCcceeCCCcCCCcccCcH
Confidence 9999999999 9999764 2333222111111100 01110 1111 12234566788999988752
Q ss_pred CCCCCCCCChh---hHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHH
Q psy5309 918 PFPPKCRVPKA---KLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLI 994 (1618)
Q Consensus 918 ~~~~~~~~~~~---~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i 994 (1618)
.+..++ .+.. .+ .++.+++|||+|+|++|.||+..|+.|+||+|++|. +.|++.
T Consensus 519 y~~r~~-~p~~~~~~~--~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~------------~~g~~~-------- 575 (880)
T 4arc_A 519 YYARYT-CPQYKEGML--DSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMR------------DAGMVN-------- 575 (880)
T ss_dssp HHHHTT-STTCCSSSC--CHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHH------------HTTSCC--------
T ss_pred HHHhhc-CCCcccccc--ChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHH------------Hhhccc--------
Confidence 111000 1110 01 135678999999999999999999999999999983 223210
Q ss_pred hhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEcccee--------eCCc-------------------
Q psy5309 995 QNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL--------LNSA------------------- 1047 (1618)
Q Consensus 995 ~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl--------~~G~------------------- 1047 (1618)
...| ++++++||||+ .+|+
T Consensus 576 -------------------------------~~eP---Fk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~ 621 (880)
T 4arc_A 576 -------------------------------SDEP---AKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRI 621 (880)
T ss_dssp -------------------------------CSCS---EEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCE
T ss_pred -------------------------------CCCC---hHHeEEeceEeecceeccccCCcccccCHHHhcccccccccc
Confidence 1123 69999999995 3455
Q ss_pred -----------------cceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHH
Q psy5309 1048 -----------------KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVK 1107 (1618)
Q Consensus 1048 -----------------KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~ 1107 (1618)
|||||+||+|+|.+++++||||++|||+++.+++++|++|+++.++. ++++++|+++++.
T Consensus 622 ~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~ 701 (880)
T 4arc_A 622 VKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHT 701 (880)
T ss_dssp EEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765 4456666555443
Q ss_pred HHHHhccc-CCCCCCCCcchHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHH
Q psy5309 1108 EILATQST-LRTGSQDSFNDKVFLSEMNLKIKETEDHYT-KMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRF 1185 (1618)
Q Consensus 1108 ~~l~~~~~-~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e-~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~ 1185 (1618)
.. ... ..........|+|++++++.++++++++|+ +|+|+.|++. ++++++.++.|. ........++.++
T Consensus 702 ~~---~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~-l~efvn~l~k~~----~~~~~~~~~l~~~ 773 (880)
T 4arc_A 702 AK---GDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA-IMELMNKLAKAP----TDGEQDRALMQEA 773 (880)
T ss_dssp HT---CCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHTSC----CSSHHHHHHHHHH
T ss_pred hc---ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHhhh----ccchHHHHHHHHH
Confidence 21 110 011123467899999999999999999998 8999999998 788888777652 1122345678999
Q ss_pred HHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1186 VEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1186 l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
++.+++||+|||||+|||||+.||.+ .|++.+.||..+
T Consensus 774 l~~ll~LLaPf~PhiaEElW~~Lg~~---------~sv~~~~wP~~d 811 (880)
T 4arc_A 774 LLAVVRMLNPFTPHICFTLWQELKGE---------GDIDNAPWPVAD 811 (880)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHTTCS---------SCGGGSCCCCCC
T ss_pred HHHHHHHHhhccHHHHHHHHHHcCCC---------CeEEeCCCCCCC
Confidence 99999999999999999999999864 256777887644
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-93 Score=943.87 Aligned_cols=688 Identities=21% Similarity=0.297 Sum_probs=481.0
Q ss_pred hhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCC
Q psy5309 10 EYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDK 89 (1618)
Q Consensus 10 ~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1618)
-++.++|++||++|+++++|++.... .++++
T Consensus 4 y~~~~iE~kw~~~W~~~~~f~~~~~~-------------------------------------------------~~~~k 34 (878)
T 2v0c_A 4 YNPHAIEAKWQRFWEEKGFMKAKDLP-------------------------------------------------GGRGK 34 (878)
T ss_dssp CCCTTHHHHHHHHHHHHTTTCCCSCC-------------------------------------------------C---E
T ss_pred CCHHHHHHHHHHHHHHcCCcccCccc-------------------------------------------------CCCCC
Confidence 46789999999999999999887611 13578
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ 169 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~ 169 (1618)
|++++|||||||.|||||+++++++|+++||+||+||+|++++||||||+|||..|++ .|+.
T Consensus 35 ~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k-------~g~~----------- 96 (878)
T 2v0c_A 35 QYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALK-------FGVH----------- 96 (878)
T ss_dssp EEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHH-------TTCC-----------
T ss_pred EEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHH-------cCCC-----------
Confidence 9999999999999999999999999999999999999999999999999999988764 1211
Q ss_pred CCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCcee
Q psy5309 170 TDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249 (1618)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~ 249 (1618)
+.+|++++++.++++|++||+++||+++|.
T Consensus 97 --------------------------------------------------~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~ 126 (878)
T 2v0c_A 97 --------------------------------------------------PKDWTYANIRQAKESLRLMGILYDWDREVT 126 (878)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCB
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHhCCccCcCCCee
Confidence 346778888999999999999999999999
Q ss_pred ecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCC-C-CCeeE-----EEEEEeeccCCcccc
Q psy5309 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEG-V-GPQEY-----TLIKMRLVKPYPAKL 322 (1618)
Q Consensus 250 T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~-~-~~~~y-----~~~~~~~~~~~~~~~ 322 (1618)
|++ |.|.+.++|+|.+|+++|+||++.++|+|||.|+|+|||+||+++.. . +.+.+ ..+.|++.. |...+
T Consensus 127 T~d--~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~-~~~~L 203 (878)
T 2v0c_A 127 TCE--PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITA-YAERL 203 (878)
T ss_dssp TTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGG-GHHHH
T ss_pred cCC--HHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecch-hHHHH
Confidence 999 88999999999999999999999999999999999999999986531 1 22221 223344321 11000
Q ss_pred -c-----------------------------cCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEec
Q psy5309 323 -C-----------------------------CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAA 372 (1618)
Q Consensus 323 -~-----------------------------~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~ 372 (1618)
. .+.+.+.+|+|||||||||||++||||||++.|+.... .++....+ .
T Consensus 204 ~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~-~~~~~~~~-~ 281 (878)
T 2v0c_A 204 LKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELA-APEKREEV-L 281 (878)
T ss_dssp HHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHS-CGGGHHHH-H
T ss_pred HHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhc-cchhHHHH-H
Confidence 0 01234579999999999999999999999998776421 11000000 0
Q ss_pred ccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHH-hhhhccCcceecCCEEEeccccc
Q psy5309 373 TLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINV-LLRLTGQVCIRSGDECVVALCDQ 451 (1618)
Q Consensus 373 ~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~i-i~~l~~~~l~r~g~~i~~~l~~Q 451 (1618)
.+.. ... .....+ + .+ ..+++|. + .|..+..+++
T Consensus 282 ~~~~------------------------------------~~~--~~~~~~-~-~~~~~~~~G~-~--~g~~~~~P~~-- 316 (878)
T 2v0c_A 282 AYVE------------------------------------AAK--RKTEIE-R-QAEGREKTGV-F--LGAYALNPAT-- 316 (878)
T ss_dssp HHHH------------------------------------HHH--TSCHHH-H-HCSSSCCCCE-E--EEEEEECTTT--
T ss_pred HHHH------------------------------------HHh--hhhhhh-h-hhccceeeeE-e--cCcEEECCCC--
Confidence 0000 000 000000 0 00 0111111 1 1222222222
Q ss_pred eeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeecc
Q psy5309 452 WYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHL 531 (1618)
Q Consensus 452 Wfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~ 531 (1618)
|..+| ++++
T Consensus 317 --------------------------------------------------~~~ip--------------------i~~~- 325 (878)
T 2v0c_A 317 --------------------------------------------------GERIP--------------------IWTA- 325 (878)
T ss_dssp --------------------------------------------------CCEEE--------------------EEEC-
T ss_pred --------------------------------------------------CCEeE--------------------EEEe-
Confidence 22345 4443
Q ss_pred ccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHh
Q psy5309 532 LQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLI 611 (1618)
Q Consensus 532 ~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~ 611 (1618)
++|+++.|||+| |+ +|+|+ +.||.++.+ |
T Consensus 326 -------------~~V~~~~GTG~V------~~--------~PaHd------------~~D~~~~~k----------~-- 354 (878)
T 2v0c_A 326 -------------DYVLFGYGTGAI------MA--------VPAHD------------QRDYEFARK----------F-- 354 (878)
T ss_dssp -------------TTSCTTSTTSEE------EE--------CTTTC------------HHHHHHHHH----------H--
T ss_pred -------------CcccCCCCCceE------Ee--------CCCCC------------HHHHHHHHH----------c--
Confidence 789999999999 99 99999 999987765 6
Q ss_pred hhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHH
Q psy5309 612 ESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQ 691 (1618)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~ 691 (1618)
|++ .+++|+.++ ++. .+| +
T Consensus 355 ----------------------------~L~---------------i~~vi~~~~-~~~-------------~~~---~- 373 (878)
T 2v0c_A 355 ----------------------------GLP---------------IKKVIERPG-EPL-------------PEP---L- 373 (878)
T ss_dssp ----------------------------TCC---------------CCCCEECSS-SCC-------------CSS---C-
T ss_pred ----------------------------CCC---------------ceeeeCCCC-ccc-------------ccc---c-
Confidence 332 233443222 000 000 0
Q ss_pred HHHHHHHhhcccceeee-ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCc
Q psy5309 692 EAKELVYLKGFYDGIML-VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSP 770 (1618)
Q Consensus 692 ~~~~~~~~~~~~~G~~~-~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g 770 (1618)
+..|. .+|+|. .|+|.|+++++|+++|+++|++.|+.. .
T Consensus 374 ---~~~~~---~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~----------------~------------------ 413 (878)
T 2v0c_A 374 ---ERAYE---EPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGK----------------G------------------ 413 (878)
T ss_dssp ---SSCCC---SCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEE----------------E------------------
T ss_pred ---ccccc---CCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCC----------------C------------------
Confidence 00121 167775 789999999999999999999999410 0
Q ss_pred hhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeeccc
Q psy5309 771 DDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRT 850 (1618)
Q Consensus 771 ~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRq 850 (1618)
+ +++ +++|||||||
T Consensus 414 -----------------------~-----------v~~--------------------------------rlrDW~ISRQ 427 (878)
T 2v0c_A 414 -----------------------R-----------VTY--------------------------------RLRDWLISRQ 427 (878)
T ss_dssp -----------------------E-----------EEE--------------------------------SCCCEECEES
T ss_pred -----------------------c-----------eEE--------------------------------ecccchhhcc
Confidence 0 011 5889999999
Q ss_pred CCCCcccCCCccccccccCC-----cceEeehhHHHHHhhcCccCCCCCccC-------------CCCcCCCCCcceeEE
Q psy5309 851 YGLGTKLPWDEQWLIESLSD-----STIYMAYYTVAHLLQGGTFRGENGNAL-------------NIKAEDLTPEVWDYV 912 (1618)
Q Consensus 851 r~WG~PIP~d~~w~~e~~~D-----~~iy~~~~ti~~~l~~~~~~g~~~~~l-------------~~~~~~l~~~~~d~~ 912 (1618)
|+||+|||+ |+|++|.. ..+.+....+..+.. ..|...+++ ...+....+|++|.|
T Consensus 428 R~WG~PIPi---~~~~~~~~v~v~~~~lpv~lp~~~~~~~---~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw 501 (878)
T 2v0c_A 428 RYWGTPIPM---VHCEACGVVPVPEEELPVLLPDLKDVED---IRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTF 501 (878)
T ss_dssp CSSSEECCE---EEETTTEEEECCGGGCCCCCCCCCCHHH---HSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHH
T ss_pred cccCCcccE---EEECCCCeEecCHHHccccccchhhhhc---cccCCCChhhhhHhhcCCcCCCCCCcceecccccccc
Confidence 999999999 99986521 111111111111110 011111111 012345678999999
Q ss_pred ecccCCCCCCCCCChhh-HHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhH
Q psy5309 913 FFKAAPFPPKCRVPKAK-LDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAK 991 (1618)
Q Consensus 913 f~~~~~~~~~~~~~~~~-~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~ 991 (1618)
|+|+=.+..++ .+..+ .--.++.+++|||+|+|++|+||+++|+.|++|||++|. +.|++
T Consensus 502 fdSsw~~~~~~-~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~------------~~g~~------ 562 (878)
T 2v0c_A 502 FDSSWYYLRYT-DPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLH------------DLGMV------ 562 (878)
T ss_dssp HHHTSHHHHTT-STTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHH------------HTTSC------
T ss_pred ccccchhhhcc-CccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHH------------Hhhcc------
Confidence 99841100000 01100 000145689999999999999999999999999999873 11210
Q ss_pred HHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceee---------------------------
Q psy5309 992 DLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL--------------------------- 1044 (1618)
Q Consensus 992 ~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~--------------------------- 1044 (1618)
..+.| ++++++||||+-
T Consensus 563 ---------------------------------~~~~P---fk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (878)
T 2v0c_A 563 ---------------------------------KVEEP---FQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIP 606 (878)
T ss_dssp ---------------------------------SCSCS---BSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCS
T ss_pred ---------------------------------cCCCc---hHhheecceEeccceeccccccccceecccccccccccc
Confidence 12223 699999999983
Q ss_pred --------------------CC-------ccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---
Q psy5309 1045 --------------------NS-------AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA--- 1094 (1618)
Q Consensus 1045 --------------------~G-------~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~--- 1094 (1618)
+| +|||||+||+|+|.+++++||||++|||+++.+++++|++|+++.++.
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~ 686 (878)
T 2v0c_A 607 ESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWR 686 (878)
T ss_dssp CSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHH
T ss_pred CchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHH
Confidence 89 899999999999999999999999999999988999999999998654
Q ss_pred HHhhHHHHHHHHHHHHHhc-ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5309 1095 GILRLYTFIEWVKEILATQ-STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAA 1173 (1618)
Q Consensus 1095 ~~~kl~N~~~~l~~~l~~~-~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~ 1173 (1618)
++++++|++++........ ... ....+...|+|++++++.++++++++|++|+|++|++. ++++.+.++.|.+..
T Consensus 687 ~l~Rl~n~~~~~~~~~~~~~~~~-~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~-l~~f~~~l~k~~~~~-- 762 (878)
T 2v0c_A 687 FLNRIYRRVAEDREALLETSGVF-QAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAA-LMEFLNALYEYRKDR-- 762 (878)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCC-CGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhccccccccc-CcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHhhhcccc--
Confidence 4567777665544432111 111 11234678999999999999999999999999999998 688888889987641
Q ss_pred cCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1174 EGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1174 ~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
. ...++.++++.+++||+|||||+|||+|+.|| + .|+|.+.||..
T Consensus 763 --~-~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-~---------~sv~~~~wP~~ 807 (878)
T 2v0c_A 763 --P-VTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-P---------DSLFEAGWPEL 807 (878)
T ss_dssp --C-SCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-S---------SCGGGSCCCCC
T ss_pred --h-hHHHHHHHHHHHHHHHcccchHHHHHHHHHcC-C---------CceeecCCCCC
Confidence 1 12678999999999999999999999999998 2 24667777753
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-68 Score=694.60 Aligned_cols=319 Identities=20% Similarity=0.252 Sum_probs=248.1
Q ss_pred EEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhh-cCcCceeecccCCCCcccCCCccccccccCCcceE
Q psy5309 796 CVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASL-NWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 796 c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l-~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
+..+.++|||+++ +++++++++.+++.. +|++.++++.+|| ++++|||||||++||+|||+ |.+ ...++++|
T Consensus 180 v~~~~~~qwF~~l--~~~~~~l~~~~~~~~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~---~~~-g~~~~~iy 252 (722)
T 1rqg_A 180 ISFRDSAHYYIKM--QDFAERLKRWIEKQP-WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPL---DEE-DMKGKVLY 252 (722)
T ss_dssp CEEEEEEEEEECG--GGTHHHHHHHHHSSC-CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSC---CCS-SSTTCEEC
T ss_pred eEEEEeccEEEEh--HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHCCCcccceeccccCccccCc---ccc-CCCCCEEE
Confidence 3444689999999 799999999999888 4999999999999 89999999999999999998 542 22467999
Q ss_pred eehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhcccccc---c---eEee
Q psy5309 875 MAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPV---D---LRCS 948 (1618)
Q Consensus 875 ~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~---D---l~v~ 948 (1618)
||+++..+++... +. + . . ..+ ..+.|+.||++ | ++++
T Consensus 253 vW~da~i~y~~~~---~~-----------~--------~-~------~~g--------~~~~~~~~w~~pd~~~~~~h~~ 295 (722)
T 1rqg_A 253 VWFEAPIGYISIT---IE-----------H--------F-K------RIG--------KPNEWKKYWLNIDGQTRVIHFI 295 (722)
T ss_dssp HHHHGGGHHHHHH---HH-----------H--------H-H------HTT--------CTTTTHHHHBCSSCCEEEEEEE
T ss_pred EEeccccchhhhH---HH-----------H--------H-h------hcC--------CchHHHhccCCCCCCCeeEEEc
Confidence 9999887776410 00 0 0 0 000 01235656652 2 7899
Q ss_pred cccccccchhHHHHHHhhccCCCCCCCCccccCCCc-cchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCC
Q psy5309 949 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGH-LLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGD 1027 (1618)
Q Consensus 949 G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~-~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~ 1027 (1618)
|+|++++|..| ||+.|...|. +.. +.+ .
T Consensus 296 GkDii~fH~~~---------------wpA~l~~~~~~l~~-------------d~~----------------------r- 324 (722)
T 1rqg_A 296 GKDNIPFHAIF---------------WPAFLMAYGKYKDE-------------EVE----------------------A- 324 (722)
T ss_dssp EGGGHHHHHTH---------------HHHHHHTTCCBCSS-------------SCC----------------------B-
T ss_pred cccccccchhh---------------hHHHHhccCCCccc-------------ccc----------------------c-
Confidence 99998887554 3433211110 000 000 0
Q ss_pred CCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHH
Q psy5309 1028 EPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTF 1102 (1618)
Q Consensus 1028 ~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~ 1102 (1618)
+.++|++|++||||+.+|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+.. .+++++|+
T Consensus 325 -g~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~ 403 (722)
T 1rqg_A 325 -EWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNF 403 (722)
T ss_dssp -CBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHH
T ss_pred -CCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 134689999999999999999999999999999999999999999999998999999999998654 45689999
Q ss_pred HHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c
Q psy5309 1103 IEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G 1176 (1618)
Q Consensus 1103 ~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~ 1176 (1618)
++|+.+++.+. +..+........|+|++++++.+++++.++|++|+|++|++. ++++.+.+|+|++..+|+. .
T Consensus 404 ~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~~k~~ 482 (722)
T 1rqg_A 404 VHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKR-VMSLASFGNRYFDHKQPWKTAKED 482 (722)
T ss_dssp HHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHTTCHHHHTTTC
T ss_pred HHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCC
Confidence 99999888653 222222234567999999999999999999999999999999 6888999999999988742 1
Q ss_pred -----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1177 -----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1177 -----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
....+++++++.+++||+|||||+||+||+.||.+
T Consensus 483 ~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 483 KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCC
Confidence 12234678999999999999999999999999865
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-68 Score=678.02 Aligned_cols=286 Identities=19% Similarity=0.234 Sum_probs=220.4
Q ss_pred cccChHHHHHHHHhhc-CcCceeecccCC----CCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCC
Q psy5309 825 NTYHDEVRRNFGASLN-WLHEYACSRTYG----LGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 899 (1618)
Q Consensus 825 ~~~P~~~k~~~~~~l~-~l~DW~ISRqr~----WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~ 899 (1618)
.++|++.++.+.+|++ +++||||||||+ ||+|||.++ ++.+|+|+++...++... +..
T Consensus 195 ~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~--------~~~~~vw~da~~~~~~~~---~~~------ 257 (542)
T 3u1f_A 195 CIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNP--------DHXVYVWLDALTNYLTGS---RLR------ 257 (542)
T ss_dssp SEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE--------EEEECHHHHHHTHHHHHH---TEE------
T ss_pred ccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCc--------Ceeeeeeeccchhhhhhh---hcc------
Confidence 3568999999999995 699999999998 999999843 368999999988887521 000
Q ss_pred CcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccc
Q psy5309 900 KAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGI 979 (1618)
Q Consensus 900 ~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~l 979 (1618)
......+.++... .. ....||+|++++|+|++++|..+ | |+.+
T Consensus 258 ----~~~~g~~~~~~d~-----------------~~-~~~~~p~d~~~~G~D~~~fh~~~--------~-------~a~l 300 (542)
T 3u1f_A 258 ----VDESGKEVSLVDD-----------------FN-ELERFPADVHVIGKDILKFHAIY--------W-------PAFL 300 (542)
T ss_dssp ----ECTTSCEEEECSS-----------------GG-GTTCCSCSEEEEEGGGHHHHHTH--------H-------HHHH
T ss_pred ----ccccCCcccccch-----------------hh-hhcCCcceEEEecccccccccch--------h-------HHHH
Confidence 0001111111110 00 11247999999999998776544 3 2110
Q ss_pred cCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccCh
Q psy5309 980 RANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTL 1059 (1618)
Q Consensus 980 r~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p 1059 (1618)
+. . ..++|+.+++|||+..+|+|||||+||+|+|
T Consensus 301 -----------------------~~------------------~-----g~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p 334 (542)
T 3u1f_A 301 -----------------------LS------------------A-----GLPLPKKIVAHGWWTKDRKKISKSLGNVFDP 334 (542)
T ss_dssp -----------------------HH------------------H-----TCCCCSCEEEECCCEETTBCCBTTTTBCCCH
T ss_pred -----------------------Hh------------------h-----cccccceeccccceecCCceeccccCCCCCh
Confidence 00 0 1346899999999999999999999999999
Q ss_pred HHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHHHHHHHHHHHhc-ccCCCCCCCCcchHHHHHHH
Q psy5309 1060 TEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTFIEWVKEILATQ-STLRTGSQDSFNDKVFLSEM 1133 (1618)
Q Consensus 1060 ~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~~~~l~~~l~~~-~~~~~~~~~~~~D~~~l~~l 1133 (1618)
.+++++||+|++||||++.+++++|++|+++.+.. ..++|+|+++|+....... +..+........|+|+++++
T Consensus 335 ~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l 414 (542)
T 3u1f_A 335 VEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLI 414 (542)
T ss_dssp HHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHH
T ss_pred hHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHh
Confidence 99999999999999999988999999999988754 3468999999887654332 23333445677899999999
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----chHHHHHHHHHHHHHhcCcCCCCchhHH
Q psy5309 1134 NLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHV 1204 (1618)
Q Consensus 1134 ~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei 1204 (1618)
+.+++++.++|++|+|++|++. ++++++.+|+|++..+|+. . ....+++++++.+++||+|||||+||+|
T Consensus 415 ~~~~~~~~~~~~~~~~~~a~~~-i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei 493 (542)
T 3u1f_A 415 KDLPGTADHYYLIPDIQKAIIA-VFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVI 493 (542)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999999999998 6888999999999888731 1 1234567888999999999999999999
Q ss_pred HHHhCCC
Q psy5309 1205 YQLLGKD 1211 (1618)
Q Consensus 1205 ~~~Lgkd 1211 (1618)
|+.||.+
T Consensus 494 ~~~Lg~~ 500 (542)
T 3u1f_A 494 FDMLGVP 500 (542)
T ss_dssp HHHHTCC
T ss_pred HHHCCCC
Confidence 9999865
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-62 Score=622.62 Aligned_cols=276 Identities=24% Similarity=0.354 Sum_probs=218.6
Q ss_pred ccChHHHHHHHHhh-cCcCceeecccCC-CCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCC
Q psy5309 826 TYHDEVRRNFGASL-NWLHEYACSRTYG-LGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAED 903 (1618)
Q Consensus 826 ~~P~~~k~~~~~~l-~~l~DW~ISRqr~-WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~ 903 (1618)
+.|+..++++.+|+ ++++||||||||. ||+|||.++ ++++|+|+++...++...
T Consensus 195 i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~--------~~~~yvWfds~~~~~~~~---------------- 250 (524)
T 2x1l_A 195 IGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHP--------DHVMYVWVDALTNYLTGV---------------- 250 (524)
T ss_dssp EESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEE--------EEEECHHHHHHTHHHHTT----------------
T ss_pred eCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCC--------CCEEEEecCCchHHHHHc----------------
Confidence 45778888888998 5899999999985 999999632 368999999887777520
Q ss_pred CCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCC
Q psy5309 904 LTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANG 983 (1618)
Q Consensus 904 l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g 983 (1618)
.++ .+ ..+.++.|||+|++++|+||+++|..| | |+.+
T Consensus 251 --------------g~p------~~----~~~~~~~~~p~di~~~G~D~~~fh~~~--------~-------~a~l---- 287 (524)
T 2x1l_A 251 --------------GFP------DT----ESESFRRYWPADLHMIGKDIIRFHTVY--------W-------PAFL---- 287 (524)
T ss_dssp --------------TTT------CT----TSHHHHHHCSCSEEEEEGGGHHHHHTH--------H-------HHHH----
T ss_pred --------------CCC------CC----chHHHHhhCCCeEEEEeechhHhHHHH--------H-------HHHH----
Confidence 011 10 013467889999999999998776544 3 1100
Q ss_pred ccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHH
Q psy5309 984 HLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1063 (1618)
Q Consensus 984 ~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii 1063 (1618)
..+ + .++|+++++||||+.+|+|||||+||+|+|.+++
T Consensus 288 -------------------------------------~~~--g---~~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i 325 (524)
T 2x1l_A 288 -------------------------------------MSA--G---LPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLV 325 (524)
T ss_dssp -------------------------------------HHH--T---CCCCSCEEEECCEEECSCSEETTTEESSCHHHHH
T ss_pred -------------------------------------HHC--C---CCCCcEEEECcEEEeCCcccCCcCCCCCCHHHHH
Confidence 000 1 2358999999999999999999999999999999
Q ss_pred hhcCccceEEeecccCcccccccccHHHHHHHH-----hhHHHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHH
Q psy5309 1064 KKFSADGMRLCLADSGDSVEDANFVESMADAGI-----LRLYTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLK 1136 (1618)
Q Consensus 1064 ~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~-----~kl~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~ 1136 (1618)
++||+|++|||+++.+++++|++|+++.+.+.. ++++|+.+|+..++.+. +..+........|++++++++.+
T Consensus 326 ~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~ 405 (524)
T 2x1l_A 326 DTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADAL 405 (524)
T ss_dssp HHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHTH
T ss_pred HHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHH
Confidence 999999999999987799999999999876654 35889998888776542 12221223456799999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhccc---Cc-------c---hHHHHHHHHHHHHHhcCcCCCCchhH
Q psy5309 1137 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAE---GG-------M---HRTLVLRFVEVQALLLCPVCPHVAEH 1203 (1618)
Q Consensus 1137 i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~---~~-------~---~~~~l~~~l~~l~~lLaP~~P~~aEe 1203 (1618)
++++.++|++|+|+.|++. ++++.+.+|+|++.++|+ .. . ...++.++++.+++||+|||||+||+
T Consensus 406 ~~~v~~a~~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aee 484 (524)
T 2x1l_A 406 LERVREHFDVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAK 484 (524)
T ss_dssp HHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999999999998 689999999999988873 11 1 12356788999999999999999999
Q ss_pred HHHHhCCC
Q psy5309 1204 VYQLLGKD 1211 (1618)
Q Consensus 1204 i~~~Lgkd 1211 (1618)
||+.||.+
T Consensus 485 i~~~L~~~ 492 (524)
T 2x1l_A 485 LLDLLGQP 492 (524)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCC
Confidence 99999865
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-62 Score=616.45 Aligned_cols=275 Identities=20% Similarity=0.282 Sum_probs=211.3
Q ss_pred ccChHHHHHHHHhhc-CcCceeecccC-CCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCC
Q psy5309 826 TYHDEVRRNFGASLN-WLHEYACSRTY-GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAED 903 (1618)
Q Consensus 826 ~~P~~~k~~~~~~l~-~l~DW~ISRqr-~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~ 903 (1618)
+.|+..++++.+||+ +++|||||||| +||+|||.|+ ++++|+|+++...|+...
T Consensus 207 i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~--------~~v~yvWfda~~~y~s~~---------------- 262 (536)
T 4dlp_A 207 IMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDE--------KHVMYVWVDALTNYITAL---------------- 262 (536)
T ss_dssp EESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCT--------TSEECHHHHHHHHHHHTT----------------
T ss_pred cCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCC--------CCceEEeeCCcHHHHHhc----------------
Confidence 357888889999996 89999999985 6999999853 478999999999998520
Q ss_pred CCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCC
Q psy5309 904 LTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANG 983 (1618)
Q Consensus 904 l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g 983 (1618)
.++ .. ...++.|||+|++++|+||+++|..| | |+.+
T Consensus 263 --------------~~~------~~-----~~~~~~~~p~dv~~~G~D~~~fh~~~--------~-------~a~l---- 298 (536)
T 4dlp_A 263 --------------GYP------DT-----TDERWAYWPANAHIIGKDISRFHAVY--------W-------PAFL---- 298 (536)
T ss_dssp --------------TTT------CT-----TSGGGGGCSCSEEEEEGGGHHHHHTH--------H-------HHHH----
T ss_pred --------------CCC------CC-----chHHHhhCCcceEEeechHHHHHHHH--------H-------HHHH----
Confidence 011 00 12478899999999999999998766 2 2110
Q ss_pred ccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHH
Q psy5309 984 HLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1063 (1618)
Q Consensus 984 ~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii 1063 (1618)
+ .+ ..++|+.|++||||+.+|+|||||+||+|+|.+++
T Consensus 299 -------------------~------------------a~-----g~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i 336 (536)
T 4dlp_A 299 -------------------M------------------SA-----QLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELV 336 (536)
T ss_dssp -------------------H------------------HT-----TCCCCSCEEEECCEEC------------CCHHHHH
T ss_pred -------------------H------------------HC-----CCCCCcEEEeeeeEeeCCceecccCCCCCCHHHHH
Confidence 0 00 12358999999999999999999999999999999
Q ss_pred hhcCccceEEeecccCcccccccccHHHHHHH-----HhhHHHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHH
Q psy5309 1064 KKFSADGMRLCLADSGDSVEDANFVESMADAG-----ILRLYTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLK 1136 (1618)
Q Consensus 1064 ~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~-----~~kl~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~ 1136 (1618)
++||+|++|||+++.++.++|++|+++.+.+. .++++|+.+|+.+++.+. +..+........|+|++++++.+
T Consensus 337 ~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~ 416 (536)
T 4dlp_A 337 ERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAA 416 (536)
T ss_dssp HHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999998779999999999887543 368999999988887653 22232334567899999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHH
Q psy5309 1137 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1207 (1618)
Q Consensus 1137 i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~ 1207 (1618)
++++.++|++|+|++|++. ++++.+.+|+|++..+|+. . ....++.++++.+++||+|||||+||+||+.
T Consensus 417 ~~~v~~a~~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~ 495 (536)
T 4dlp_A 417 LETARKAMDDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDI 495 (536)
T ss_dssp HHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 9999999999999999998 6888999999999988621 1 2234577889999999999999999999999
Q ss_pred hCCC
Q psy5309 1208 LGKD 1211 (1618)
Q Consensus 1208 Lgkd 1211 (1618)
||.+
T Consensus 496 L~~~ 499 (536)
T 4dlp_A 496 LAVP 499 (536)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9865
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=618.52 Aligned_cols=303 Identities=17% Similarity=0.234 Sum_probs=242.9
Q ss_pred EEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhc-CcCceeecccC-CCCcccCCCccccccccCCcceE
Q psy5309 797 VVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLN-WLHEYACSRTY-GLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 797 ~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~-~l~DW~ISRqr-~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
..+.++|||+++ +++++.+++.+++ .++|+..++.+.+|++ +++|||||||+ +||+|||.|+ ++++|
T Consensus 196 ~~~~~~~~f~~l--~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~--------~~viy 264 (560)
T 3h99_A 196 VMRDSEHFFFDL--PSFSEMLQAWTRS-GALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAP--------GKYFY 264 (560)
T ss_dssp EEEEEEEEEECG--GGGHHHHHHHHHT-SCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCT--------TEEEC
T ss_pred eEEecceEEEEH--HHHHHHHHHHHHh-CCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCC--------CceEE
Confidence 344688999999 7899999999988 5678899999999997 99999999999 8999999843 47999
Q ss_pred eehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccc-----eEeec
Q psy5309 875 MAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVD-----LRCSG 949 (1618)
Q Consensus 875 ~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~D-----l~v~G 949 (1618)
+|+++...|+... ...+.. .+....|+.|||.| +++.|
T Consensus 265 vW~da~~~y~s~~-----------------------------------~~~~~~--~~~~~~~~~~wp~~~~~~~~~~~G 307 (560)
T 3h99_A 265 VWLDAPIGLMGSF-----------------------------------KNLCDK--RGDSVSFDEYWKKDSTAELYHFIG 307 (560)
T ss_dssp HHHHHHHHHHHHH-----------------------------------HHHHHH--HTCSSHHHHHHBTTCCSEEEEEEE
T ss_pred eCcccchhHHHHH-----------------------------------HHHhhc--cCChhhHHHhCcCCCCceeEEEec
Confidence 9999999887520 000000 00013578899999 99999
Q ss_pred ccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCC
Q psy5309 950 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEP 1029 (1618)
Q Consensus 950 ~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~ 1029 (1618)
+|++++|..| | |+.+. + + .
T Consensus 308 ~D~~~fh~~~--------~-------~a~l~----------------------------------------~-~-----g 326 (560)
T 3h99_A 308 KDIVYFLSLF--------W-------PAMLE----------------------------------------G-S-----N 326 (560)
T ss_dssp GGGHHHHHTH--------H-------HHHHH----------------------------------------H-T-----T
T ss_pred cccchhHHHH--------H-------HHHHH----------------------------------------h-C-----C
Confidence 9999988666 2 21100 0 0 1
Q ss_pred CCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCccc-ccccccHHHHHH-----HHhhHHHHH
Q psy5309 1030 EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV-EDANFVESMADA-----GILRLYTFI 1103 (1618)
Q Consensus 1030 ~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~-~D~~fs~~~~~~-----~~~kl~N~~ 1103 (1618)
.++|+.+++||||+.+|+|||||+||+|+|.+++++||+|++|||+++.++.+ +|++|+++.+.+ ..++++|++
T Consensus 327 ~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~ 406 (560)
T 3h99_A 327 FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA 406 (560)
T ss_dssp BCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHH
T ss_pred CCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 23589999999999999999999999999999999999999999999887777 899999987643 346889999
Q ss_pred HHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhccc----C--c-
Q psy5309 1104 EWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAE----G--G- 1176 (1618)
Q Consensus 1104 ~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~----~--~- 1176 (1618)
+|+.+++.+.... .......|+|++++++.+++++.++|++|+|+.|++. ++++++.+|+|++.++|+ . .
T Consensus 407 ~R~~~~~~~~~~~--~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~l~k~~~~~ 483 (560)
T 3h99_A 407 SRNAGFINKRFDG--VLASELADPQLYKTFTDAAEVIGEAWESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEGRD 483 (560)
T ss_dssp HTTHHHHHHHSTT--BCCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTTCH
T ss_pred HHHHHHHHHhcCC--CCCCccccHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCcCcH
Confidence 8888877653110 0112357999999999999999999999999999999 688999999999998863 1 1
Q ss_pred ----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1177 ----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1177 ----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
....++.++++.+++||+|||||+||+||+.||.+
T Consensus 484 ~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 522 (560)
T 3h99_A 484 ADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 522 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC
Confidence 11234678999999999999999999999999854
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-62 Score=651.92 Aligned_cols=672 Identities=25% Similarity=0.426 Sum_probs=455.3
Q ss_pred CCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHH
Q psy5309 43 DKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRF 120 (1618)
Q Consensus 43 ~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~ 120 (1618)
+|||++.|+||+||.+||||.+++ ++.|+.+| +++++|.|++||.+ .+|.+|-+-|.....+|
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~----------~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~----- 98 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTY----------TIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRD----- 98 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHH----------HHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTC-----
T ss_pred CcEEEEeCCCCCCCCcchhhhHHH----------HHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccc-----
Confidence 589999999999999999999888 44455555 35888999999999 89999876543211111
Q ss_pred HHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHH
Q psy5309 121 NRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQ 200 (1618)
Q Consensus 121 ~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~ 200 (1618)
-+.. + ...+.+|++. +.+ -+.....+.+...... +
T Consensus 99 ------------------~~~~---~---~~~~~~gi~~----------------~~~----~~~~~~~~~~~~~~~~-~ 133 (967)
T 1wz2_A 99 ------------------PKTI---W---IYRDVYKVPE----------------EIL----WTFEDPINIVKYFMKA-A 133 (967)
T ss_dssp ------------------HHHH---H---HHHTTSCCCH----------------HHH----HGGGSHHHHHHHHHHH-H
T ss_pred ------------------hhHH---H---HHHHhcCCCH----------------HHH----HHHHHHHHHHHHHHHH-H
Confidence 0100 0 0011123321 000 0011233444444443 4
Q ss_pred HHHHHhcCCCHHHHHHHhhhh--hHHhhchhHHHHHHHHcCCccc------ccCceeecCCChhhhHHHHHHHHHHHhcC
Q psy5309 201 WQIMQSLGLEDDEIRKFADAS--HWLDHFPPLAVQDLRSIGIHVD------WRRTFITTDSNPFFDSFVRWQFMRLRDRH 272 (1618)
Q Consensus 201 ~~~~~~~g~~~~e~~~f~~~~--~~~~~~~~~~~~~l~~lGi~~D------w~~~~~T~d~~p~y~~~v~~~f~~L~~kG 272 (1618)
.+.++++|++.||.+++.++. +.+.++..+++.+|...|+.+- |...-.|.-.+-+.. +..+
T Consensus 134 ~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~----------~~~~ 203 (967)
T 1wz2_A 134 KETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLM----------EGED 203 (967)
T ss_dssp HHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCS----------SCCC
T ss_pred HHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhc----------cCCC
Confidence 577899999999999999888 9999999999999999997665 433322322220000 0000
Q ss_pred -----ccc-----c----CceeEEEecCCCCcccchhhccCCCCCCe-eEEEEEEeeccCCccccccCCCCCcEEEEeec
Q psy5309 273 -----KIK-----Y----GKRYTVFSPRDNQPCMDHDRASGEGVGPQ-EYTLIKMRLVKPYPAKLCCLDSKPVFLVAATL 337 (1618)
Q Consensus 273 -----~iy-----~----g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TT 337 (1618)
+++ . +...+.|..+-.|-.++-=+.- .|. .|+.++.. + ...+..++++..
T Consensus 204 ~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~avav----~P~~~Y~~~~~~--~---------~~~~~~~i~a~~ 268 (967)
T 1wz2_A 204 VPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV----NPNATYVKAKVR--R---------KDKEETWIVSKE 268 (967)
T ss_dssp CCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCCEEEE----CSSSCEEEEEEE--C---------SSCEEEEEEEHH
T ss_pred ceeceeEEEEEEecCCCCceEEEEEcCCchHhhhheEEEE----CCCCcEEEEEec--C---------CCcceeeehHHH
Confidence 000 0 1345566666666555532221 121 23322211 0 000011222211
Q ss_pred Ccccccc---CceEE--eC-CCC-CceeecccCCccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcC----------
Q psy5309 338 RPETMYG---QTNAW--VR-PDM-AYIALSCLDSKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTA---------- 399 (1618)
Q Consensus 338 rPeTl~g---~~ava--V~-P~~-~Y~~~~~~~~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~---------- 399 (1618)
.-+.+.. ...+. +. -+. .-...+|+.+++++|+++ +|.++ +|||+|+++|+|+..||...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~--~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~ 346 (967)
T 1wz2_A 269 AAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPD--NATGVVMSVPAHAPFDHVALEDLKRETEIL 346 (967)
T ss_dssp HHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSS--STTSCEEECTTSCTTTTTTTSCCSCCSCCC
T ss_pred HHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCC--CCcccEEeecCCCHHHHHHHHhhccchhHH
Confidence 1111000 00000 00 000 011234667888888776 47776 99999999999988887631
Q ss_pred C--C----------cEEEecc---------------------------------------cccc-ccccCCCchhhhHHH
Q psy5309 400 T--G----------EVFVCTE---------------------------------------RSAR-NMAYQGFTEVEGKIN 427 (1618)
Q Consensus 400 ~--~----------~~~i~~~---------------------------------------~~~~-~~~~~g~~~~~a~~~ 427 (1618)
. | .+.+++. ++.. ...|.|+.+++|+..
T Consensus 347 ~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~ 426 (967)
T 1wz2_A 347 EKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEA 426 (967)
T ss_dssp CTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTT
T ss_pred HHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHH
Confidence 0 1 1112110 0000 235999999999999
Q ss_pred Hhhhhcc-------------CcceecCCEEEec-cccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccc
Q psy5309 428 VLLRLTG-------------QVCIRSGDECVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEY 493 (1618)
Q Consensus 428 ii~~l~~-------------~~l~r~g~~i~~~-l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dW 493 (1618)
|++.|+. ..|+|||++++++ +++|||++|++++++..+.+++++++++|+..++.+.+|++|++||
T Consensus 427 i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~DW 506 (967)
T 1wz2_A 427 IAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKK 506 (967)
T ss_dssp THHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHSCCEE
T ss_pred HHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhhhcccCe
Confidence 9999874 3467999999999 6999999999988999999999999999999999999999999999
Q ss_pred eeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccC------CCC
Q psy5309 494 ACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKS------APF 567 (1618)
Q Consensus 494 ciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~------~~~ 567 (1618)
|||||++||+|||||+.|++++++|+++|+++|++++.+.. +.+. ..+++++.++.+|||+|... .++
T Consensus 507 ~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~--~~~~----~g~~~~~l~~~~~d~~~~~~~~~g~~~~~ 580 (967)
T 1wz2_A 507 ACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINK--LRQE----GKLDPEKLTPEFFDYIFLEEFSEDKEKEL 580 (967)
T ss_dssp CCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHH--HHHT----TCCCGGGCCHHHHHHTTTSCCCHHHHHHH
T ss_pred eeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHH--HHHh----cCCChHHcCcccceeeccCccccCccccc
Confidence 99999999999999999999999999999999988765431 1010 13566788899999998641 011
Q ss_pred CCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccc
Q psy5309 568 PPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINC 647 (1618)
Q Consensus 568 ~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1618)
.+.+|+|...+.++|++|+||||.|+.+.|. .+
T Consensus 581 ~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~-----------------------------------------D~------ 613 (967)
T 1wz2_A 581 EKKTGIPAEIIHEMKEEFEYWYPLDWRCSGK-----------------------------------------DL------ 613 (967)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHCSCSEEEEEG-----------------------------------------GG------
T ss_pred hhhcCCCHHHHhhhHHHHHhhCCCeEEeeee-----------------------------------------Cc------
Confidence 2245688888888999999999999887765 00
Q ss_pred eeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHH
Q psy5309 648 VIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKK 727 (1618)
Q Consensus 648 ~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~ 727 (1618)
+
T Consensus 614 --------------i----------------------------------------------------------------- 614 (967)
T 1wz2_A 614 --------------I----------------------------------------------------------------- 614 (967)
T ss_dssp --------------T-----------------------------------------------------------------
T ss_pred --------------c-----------------------------------------------------------------
Confidence 0
Q ss_pred HHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceee
Q psy5309 728 IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLD 807 (1618)
Q Consensus 728 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~ 807 (1618)
.+|.+. |
T Consensus 615 -----------------------------------------------------------------~~H~~~------~-- 621 (967)
T 1wz2_A 615 -----------------------------------------------------------------PNHLTF------F-- 621 (967)
T ss_dssp -----------------------------------------------------------------TTHHHH------H--
T ss_pred -----------------------------------------------------------------hhHHHH------H--
Confidence 011000 0
Q ss_pred cCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcC
Q psy5309 808 YGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGG 887 (1618)
Q Consensus 808 ~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~ 887 (1618)
...+..
T Consensus 622 -----------------------------------------------------------------------~~~~~a--- 627 (967)
T 1wz2_A 622 -----------------------------------------------------------------------IFNHVA--- 627 (967)
T ss_dssp -----------------------------------------------------------------------HHHHHH---
T ss_pred -----------------------------------------------------------------------HHHHHH---
Confidence 000000
Q ss_pred ccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhc
Q psy5309 888 TFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAI 967 (1618)
Q Consensus 888 ~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~l 967 (1618)
. ++ . ..
T Consensus 628 ------------------------------------------------~----~~-------~---------------~~ 633 (967)
T 1wz2_A 628 ------------------------------------------------I----FR-------E---------------EH 633 (967)
T ss_dssp ------------------------------------------------H----SC-------S---------------TT
T ss_pred ------------------------------------------------H----cC-------c---------------cc
Confidence 0 00 0 00
Q ss_pred cCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCc
Q psy5309 968 WGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSA 1047 (1618)
Q Consensus 968 w~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~ 1047 (1618)
| |+.+++||||+.+|+
T Consensus 634 ~----------------------------------------------------------------pk~v~~~G~v~~~G~ 649 (967)
T 1wz2_A 634 W----------------------------------------------------------------PKGIAVNGFGTLEGQ 649 (967)
T ss_dssp S----------------------------------------------------------------CCCEEEECCEEESSS
T ss_pred c----------------------------------------------------------------cceEEEeeEEeeCCE
Confidence 2 578999999999999
Q ss_pred cceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHHHHHhcccCCCCCCCCc
Q psy5309 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKEILATQSTLRTGSQDSF 1124 (1618)
Q Consensus 1048 KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~ 1124 (1618)
|||||+||+|+|.+++++||+|++|||+++++++++|++|+++.++. .+++++|+++++.+. ..+.......
T Consensus 650 KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-----~~~~~~~~~~ 724 (967)
T 1wz2_A 650 KMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEY-----EVKGNVELKD 724 (967)
T ss_dssp CCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS-----CCCCCCCCCH
T ss_pred EccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcccCCH
Confidence 99999999999999999999999999999888999999999988755 445666665554321 1111223456
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHhcCcCCCCchhH
Q psy5309 1125 NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG-GMHRTLVLRFVEVQALLLCPVCPHVAEH 1203 (1618)
Q Consensus 1125 ~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~-~~~~~~l~~~l~~l~~lLaP~~P~~aEe 1203 (1618)
.|+|++++++.+++++.++|++|+|+.|+..+++++.+.+|+|++.+++.. +..+.++.++++.+++||+|||||+|||
T Consensus 725 ~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~~~~~~~~~l~~~l~~l~~LLaP~~P~~aEe 804 (967)
T 1wz2_A 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEE 804 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 899999999999999999999999999999867889999999999987532 2466789999999999999999999999
Q ss_pred HHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1204 i~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
||+.||.+ .|+|.+.||..+
T Consensus 805 iw~~L~~~---------~sv~~~~wP~~~ 824 (967)
T 1wz2_A 805 LWEKLGGE---------GFVSLAKWPEPV 824 (967)
T ss_dssp HHHHSSCC---------SCGGGSCCCCCC
T ss_pred HHHhcCCC---------CceeccCCCCCC
Confidence 99999853 256778887644
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-61 Score=611.24 Aligned_cols=306 Identities=17% Similarity=0.235 Sum_probs=239.2
Q ss_pred cCcceeecCCchHHHHHHHHHhc--ccccChHHHHHHHHhhc-CcCceeecc----cCCCCcccCCCccccccccCCcce
Q psy5309 801 CDQWYLDYGEPTWKAAAEQCLAN--MNTYHDEVRRNFGASLN-WLHEYACSR----TYGLGTKLPWDEQWLIESLSDSTI 873 (1618)
Q Consensus 801 ~~QWfi~~~~~~~k~~~~~~i~~--v~~~P~~~k~~~~~~l~-~l~DW~ISR----qr~WG~PIP~d~~w~~e~~~D~~i 873 (1618)
++|||+++ +.+++++++.+++ ..++|+..++++.+||+ +++|||||| |++||+|||.|+ ++++
T Consensus 188 ~~~~f~~l--~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~--------~~v~ 257 (564)
T 3kfl_A 188 EENYMFRL--SAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDE--------RHCI 257 (564)
T ss_dssp EEEEEECG--GGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE--------EEEE
T ss_pred cceeEEEH--HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCC--------CCEE
Confidence 34566665 4556666666653 23579999999999996 999999999 899999999843 3789
Q ss_pred EeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhh--ccccccceEeeccc
Q psy5309 874 YMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREF--QYWYPVDLRCSGKD 951 (1618)
Q Consensus 874 y~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~w~p~Dl~v~G~D 951 (1618)
|||+++...|+.. ..||.+.... . .+...+ +.|||+|++++|+|
T Consensus 258 yVWfDa~~~y~s~----------------------~~~~~~~~~~---------~---~~~~~~~~~~~wp~dv~~~GkD 303 (564)
T 3kfl_A 258 YVWLDALFNYYTG----------------------ALTRVATDGT---------E---TLDEDHHALNRWPADVHVVGKD 303 (564)
T ss_dssp CHHHHHHTHHHHH----------------------HHEEECTTSC---------E---EECSSSTTTTCCSCSEEEEEGG
T ss_pred EEeccCcHHHHHH----------------------hCcccccccc---------c---cchhcchhhhcCccceEEEeec
Confidence 9999999888852 0111110000 0 000124 67899999999999
Q ss_pred ccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCC
Q psy5309 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEM 1031 (1618)
Q Consensus 952 ~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~ 1031 (1618)
|+++|..| | |+.|.. + ..+
T Consensus 304 ii~FH~~~--------w-------pa~L~a-----------------------------------------~-----g~~ 322 (564)
T 3kfl_A 304 ILKFHAIY--------W-------PAFLMS-----------------------------------------A-----ELP 322 (564)
T ss_dssp GHHHHHTH--------H-------HHHHHH-----------------------------------------T-----TCC
T ss_pred ccchHHHH--------H-------HHHHHh-----------------------------------------C-----CCC
Confidence 99998766 3 321100 0 123
Q ss_pred cCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHHHHHH
Q psy5309 1032 WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTFIEWV 1106 (1618)
Q Consensus 1032 ~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~~~~l 1106 (1618)
+|+.|++||||..+|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+.. .+++++|+++|+
T Consensus 323 ~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~ 402 (564)
T 3kfl_A 323 LPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRC 402 (564)
T ss_dssp CCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred CCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999977999999999998754 446899999999
Q ss_pred HHHHHhcc-cCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----
Q psy5309 1107 KEILATQS-TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G----- 1176 (1618)
Q Consensus 1107 ~~~l~~~~-~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~----- 1176 (1618)
.+++.... ..+........|++++++++.+++++.++|++|+|++|++. ++++++.+|+|++.++|+. .
T Consensus 403 ~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~-i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~ 481 (564)
T 3kfl_A 403 VAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIA-IFDVLRSLNAYVTENAPWKLVKMDTARLG 481 (564)
T ss_dssp HCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTTCHHHHH
T ss_pred HHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHH
Confidence 88776222 22323345678999999999999999999999999999998 7899999999999988731 1
Q ss_pred chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCc
Q psy5309 1177 MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212 (1618)
Q Consensus 1177 ~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~ 1212 (1618)
....++.++++.+++||+|||||+||+||+.||.+.
T Consensus 482 ~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~ 517 (564)
T 3kfl_A 482 TVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPE 517 (564)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCc
Confidence 233567889999999999999999999999999753
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-60 Score=601.42 Aligned_cols=270 Identities=20% Similarity=0.267 Sum_probs=211.1
Q ss_pred cChHHHHHHHHhh-cCcCceeecc--cC-CCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcC
Q psy5309 827 YHDEVRRNFGASL-NWLHEYACSR--TY-GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAE 902 (1618)
Q Consensus 827 ~P~~~k~~~~~~l-~~l~DW~ISR--qr-~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~ 902 (1618)
.|+..++++.+|+ ++++|||||| || .||+|||.|+ +.++|+|+++...++..
T Consensus 182 ~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~--------~~v~~vWfds~~~y~~~---------------- 237 (500)
T 2d5b_A 182 RPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDE--------NHVTFVWFDALLNYVSA---------------- 237 (500)
T ss_dssp ESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEE--------EEEECHHHHHHTHHHHT----------------
T ss_pred CCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCC--------CCeeEEccccchhhHHH----------------
Confidence 4677778888899 5789999999 77 5999999843 36889999998777741
Q ss_pred CCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCC
Q psy5309 903 DLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN 982 (1618)
Q Consensus 903 ~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~ 982 (1618)
..++ .+ .+ ++.|||+|++++|+||+++|..| | |+.
T Consensus 238 --------------~g~~------~~-----~~-~~~~~p~di~~~G~D~~~fh~~~--------~-------~a~---- 272 (500)
T 2d5b_A 238 --------------LDYP------EG-----EA-YRTFWPHAWHLIGKDILKPHAVF--------W-------PTM---- 272 (500)
T ss_dssp --------------TTTT------TC-----HH-HHHHGGGEEEEEEGGGHHHHHTH--------H-------HHH----
T ss_pred --------------cCCC------CC-----ch-HHHcCCCeEEEEeechhhhHHHH--------H-------HHH----
Confidence 0111 11 11 66788999999999999988665 2 110
Q ss_pred CccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceee-CCccceeccCcccChHH
Q psy5309 983 GHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 983 g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~-~G~KMSKS~GNvV~p~e 1061 (1618)
..+. + .++|+++++||||+. +|+|||||+||+|+|.+
T Consensus 273 --------------------------------------~~~~-g---~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d 310 (500)
T 2d5b_A 273 --------------------------------------LKAA-G---IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFA 310 (500)
T ss_dssp --------------------------------------HHHH-T---CCCCSEEEEECCEECTTSSCCCTTTTCCCCHHH
T ss_pred --------------------------------------HHHc-C---CCCCcEEEECceEEeCCCCcccccCCCCCCHHH
Confidence 0000 1 234899999999997 99999999999999999
Q ss_pred HHhhcCccceEEeecccCcccccccccHHHHHHHH-----hhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHH
Q psy5309 1062 AVKKFSADGMRLCLADSGDSVEDANFVESMADAGI-----LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLK 1136 (1618)
Q Consensus 1062 ii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~-----~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~ 1136 (1618)
++++||+|++|||+++.+++++|++|+++.+.+.. ++++|+.+++..++.+.... ..+ ...+++++++++.+
T Consensus 311 ~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~-~~~--~~~~~~l~~~l~~~ 387 (500)
T 2d5b_A 311 LLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEG-RIP--EPVAGEELAEGTGL 387 (500)
T ss_dssp HHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTT-BCC--CCCCCGGGGGGGGH
T ss_pred HHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC--chhHHHHHHHHHHH
Confidence 99999999999999987799999999999876533 56788888777665442110 011 11247889999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHH
Q psy5309 1137 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1207 (1618)
Q Consensus 1137 i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~ 1207 (1618)
++++.++|++|+|+.|++. ++++.+.+|+|++.++|+. . ....++.++++.++++|+|||||+||+||+.
T Consensus 388 ~~~v~~a~~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~ 466 (500)
T 2d5b_A 388 AGRLRPLVRELKFHVALEE-AMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRA 466 (500)
T ss_dssp HHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 9999999999999999998 7899999999999887641 1 1234577888999999999999999999999
Q ss_pred hCCC
Q psy5309 1208 LGKD 1211 (1618)
Q Consensus 1208 Lgkd 1211 (1618)
||.+
T Consensus 467 l~~~ 470 (500)
T 2d5b_A 467 LGLK 470 (500)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9875
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-60 Score=595.97 Aligned_cols=266 Identities=21% Similarity=0.311 Sum_probs=210.0
Q ss_pred cChHHHHHHHHhhc-CcCceeecc--cC-CCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcC
Q psy5309 827 YHDEVRRNFGASLN-WLHEYACSR--TY-GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAE 902 (1618)
Q Consensus 827 ~P~~~k~~~~~~l~-~l~DW~ISR--qr-~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~ 902 (1618)
.|+..++++.+|++ +++|||||| || .||+|||.|+. ..+|+|+++...++..
T Consensus 185 ~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~--------~~i~vW~ds~~~~~s~---------------- 240 (497)
T 2csx_A 185 QPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPE--------HTIYVWFDALFNYISA---------------- 240 (497)
T ss_dssp CSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEE--------EEECSHHHHHTHHHHT----------------
T ss_pred CcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCC--------ceEEEecccchhhccc----------------
Confidence 35666677778884 789999999 77 59999998443 4578999987777641
Q ss_pred CCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCC
Q psy5309 903 DLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN 982 (1618)
Q Consensus 903 ~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~ 982 (1618)
++.. .. .+||+|++++|+||+++|..| | |+.+
T Consensus 241 ----------------------~~~~------~~--~~~p~di~~~G~D~~~~H~~~--------~-------~a~l--- 272 (497)
T 2csx_A 241 ----------------------LEDK------VE--IYWPADLHLVGKDILRFHTVY--------W-------PAFL--- 272 (497)
T ss_dssp ----------------------TTTT------HH--HHCSCSCEEEEGGGHHHHHTH--------H-------HHHH---
T ss_pred ----------------------CCCc------ch--hhCCceEEEeecchhHhHHHH--------H-------HHHH---
Confidence 0000 11 345999999999999887654 2 1100
Q ss_pred CccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHH
Q psy5309 983 GHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEA 1062 (1618)
Q Consensus 983 g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~ei 1062 (1618)
..+ + .++|+++++||||+.+|+|||||+||+|+|.++
T Consensus 273 --------------------------------------~~~--g---~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dl 309 (497)
T 2csx_A 273 --------------------------------------MSL--G---YELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEV 309 (497)
T ss_dssp --------------------------------------HHH--T---CCCCSCEEEECCEESSSSBCCTTTTCCCCHHHH
T ss_pred --------------------------------------HHc--C---CCCCcEEEECcEEEeCCceeCCcCCCCCCHHHH
Confidence 000 1 234899999999999999999999999999999
Q ss_pred HhhcCccceEEeecccCcccccccccHHHHHHHH-----hhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHH
Q psy5309 1063 VKKFSADGMRLCLADSGDSVEDANFVESMADAGI-----LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKI 1137 (1618)
Q Consensus 1063 i~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~-----~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i 1137 (1618)
+++||+|++|||+++.+++++|++|+++.+.... ++++|+.+|+..++.+.... ......|++++++++.++
T Consensus 310 i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~---~~~~~~d~~l~~~l~~~~ 386 (497)
T 2csx_A 310 VQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGG---EVSGARDEEYAKIAQESI 386 (497)
T ss_dssp HHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTT---CBCCCCCTTHHHHHHHHH
T ss_pred HHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCchhHHHHHHHHHHHH
Confidence 9999999999999987799999999999876543 56889998888877653210 011457899999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC-----c-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHH
Q psy5309 1138 KETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG-----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1207 (1618)
Q Consensus 1138 ~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~-----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~ 1207 (1618)
+++.++|++|+|+.|++. ++++.+.+|+|++.++|+. . ....++.++++.+++||+|||||+||+||+.
T Consensus 387 ~~v~~~~~~~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~ 465 (497)
T 2csx_A 387 KNYENYMEKVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQM 465 (497)
T ss_dssp HHHHHHHTTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 999999999999999998 6899999999999887631 1 1224577889999999999999999999999
Q ss_pred hCCC
Q psy5309 1208 LGKD 1211 (1618)
Q Consensus 1208 Lgkd 1211 (1618)
||.+
T Consensus 466 L~~~ 469 (497)
T 2csx_A 466 LGEK 469 (497)
T ss_dssp TTCS
T ss_pred cCCC
Confidence 9865
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-57 Score=592.65 Aligned_cols=187 Identities=21% Similarity=0.277 Sum_probs=159.0
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~ 1108 (1618)
++++++||+++ .+|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.++ +++++++|+.+|+..
T Consensus 512 fk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~ 591 (862)
T 1gax_A 512 FKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLL 591 (862)
T ss_dssp BSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999 89999999999999999999999999999999998899999999998865 467899999888876
Q ss_pred HHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHhccc----CcchHHHH
Q psy5309 1109 ILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAE----GGMHRTLV 1182 (1618)
Q Consensus 1109 ~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~k~~----~~~~~~~l 1182 (1618)
.+.... +........|+|++++++.++++++++|++|+|+.|++. ++.+. +++|+|++.++++ ....+.++
T Consensus 592 ~~~~~~--~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~l 668 (862)
T 1gax_A 592 SREGFQ--AKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAARE-VYELVWSEFCDWYLEAAKPALKAGNAHTLRTL 668 (862)
T ss_dssp HSSSCC--CCBCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHTTBHHHHHHH
T ss_pred cccCCC--CccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhccHHHHHHHH
Confidence 543211 111235678999999999999999999999999999999 45655 6899999999874 22456789
Q ss_pred HHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1183 LRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1183 ~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
.++++.+++||+|||||+|||||+.|+.+ .|+|.+.||..
T Consensus 669 ~~~l~~~~~lL~P~~P~~aEeiw~~L~~~---------~sv~~~~wP~~ 708 (862)
T 1gax_A 669 EEVLAVLLKLLHPMMPFLTSELYQALTGK---------EELALEAWPEP 708 (862)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHCC---------SCGGGSCCCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhcCCC---------CeEEecCCCCC
Confidence 99999999999999999999999999742 25677888753
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-54 Score=567.12 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=157.9
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~ 1108 (1618)
++++++|||++ .+|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.++. .+++|+|+++|+++
T Consensus 579 fk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~ 657 (917)
T 1ffy_A 579 YKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLG 657 (917)
T ss_dssp BSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999 6999999999999999999999999999999998 6999999999988654 57899999999887
Q ss_pred HHHhccc---CCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHhccc----C----
Q psy5309 1109 ILATQST---LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAE----G---- 1175 (1618)
Q Consensus 1109 ~l~~~~~---~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~--~~n~Yi~~~k~~----~---- 1175 (1618)
++..... ..+...+...|+|++++++.+++++.++|++|+|+.|++. ++.+.. ++|+|++..|++ .
T Consensus 658 nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~ 736 (917)
T 1ffy_A 658 NINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQE-VQNFINVELSNFYLDYGKDILYIEQRDSH 736 (917)
T ss_dssp TSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCH
T ss_pred hhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHHHhcchhhhccCCCcH
Confidence 6543210 0011234678999999999999999999999999999998 577765 889999998872 1
Q ss_pred --cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1176 --GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1176 --~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
...++++..+++.+++||+|||||+|||||+.|+... -.|+|.+.||..
T Consensus 737 ~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~~-------~~sv~~~~wP~~ 787 (917)
T 1ffy_A 737 IRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVK-------EESVHLADMPKV 787 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTCS-------SSSGGGSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccCC-------CCCeEecCCCCC
Confidence 1345778999999999999999999999999997521 125677777764
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=346.63 Aligned_cols=231 Identities=34% Similarity=0.552 Sum_probs=179.5
Q ss_pred CCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 326 DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 326 ~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
.+.+.+++||||||||||||+||||||+..|+.+... +.+.+|++.
T Consensus 76 ~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~-~ge~~IvAe--------------------------------- 121 (311)
T 3pz6_A 76 DNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYIN-KDEVIIVSE--------------------------------- 121 (311)
T ss_dssp CSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEE-TTEEEEEEH---------------------------------
T ss_pred CCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEEC-CCCEEEEeH---------------------------------
Confidence 4456799999999999999999999999999998541 223444443
Q ss_pred eccccccccccCCCchhh--hHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhH
Q psy5309 406 CTERSARNMAYQGFTEVE--GKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNF 483 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~--a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~ 483 (1618)
+.+.++.+++..... ...+++.+++|..+. |..+.++++..
T Consensus 122 ---~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~--G~~~~hPl~~~-------------------------------- 164 (311)
T 3pz6_A 122 ---HAAVNMAHQGLNNNKPFGELDFISEISGSDLL--LATVRAPLSPY-------------------------------- 164 (311)
T ss_dssp ---HHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHT--TCEEECTTCSS--------------------------------
T ss_pred ---HHHHHHHHhcccccccCCCcEEEEEEEhHHhc--CCEEECCCCCC--------------------------------
Confidence 333333344321000 123455566666666 55555444310
Q ss_pred hhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeecc
Q psy5309 484 GASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFK 563 (1618)
Q Consensus 484 ~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~ 563 (1618)
..+| +++. +||+++.|||+| |
T Consensus 165 -------------------~~ip--------------------Il~a--------------d~Vt~d~GTGiV------h 185 (311)
T 3pz6_A 165 -------------------EQIF--------------------VLPL--------------ETIKMDKGTGIV------T 185 (311)
T ss_dssp -------------------SCEE--------------------EEEC--------------TTCCTTSTTSEE------E
T ss_pred -------------------CeeE--------------------EEec--------------CcCccCCCcceE------E
Confidence 0133 6654 899999999999 9
Q ss_pred CCCCCCCCCCChhhHHHHHhhhccccccceecccc-ccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCc
Q psy5309 564 SAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK-VSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNA 642 (1618)
Q Consensus 564 ~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1618)
+ +|+|+ ++||.++.+ |+++++++++| ||+
T Consensus 186 ~--------aPaHg------------~dDy~~~~d~Lk~k~~~~~Ky------------------------------gi~ 215 (311)
T 3pz6_A 186 S--------VPSDA------------PDDYACYKDILENRNGIAEKY------------------------------GVD 215 (311)
T ss_dssp E--------CTTTC------------HHHHHHHHHHHTTGGGHHHHT------------------------------TCC
T ss_pred e--------CCCCC------------HHHHHHHHHHhhccHHHHHHc------------------------------CCc
Confidence 9 99999 999999999 99999999999 664
Q ss_pred ccccceeeeecc-CCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHH
Q psy5309 643 LNINCVIVFQVL-PYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVK 721 (1618)
Q Consensus 643 ~~~~~~~~~~~~-~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~ 721 (1618)
. ++|. +++++|||++|+||+++|+++|++++|+||+|.++|++|++.+|++||++|+|..|+|+|++|.+||
T Consensus 216 ~-------e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~~g~~~G~~V~eAk 288 (311)
T 3pz6_A 216 V-------GLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMKMGPFAGQSVKDCK 288 (311)
T ss_dssp H-------HHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHH
T ss_pred h-------HHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEeeeccCCeEHHHHH
Confidence 3 3676 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcccCCCcccceeeeccccc
Q psy5309 722 KLLQKKIDIIGVALKAPVTSHSVIYTLPMLS 752 (1618)
Q Consensus 722 ~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 752 (1618)
++|+++|+++| .+..|++|+++
T Consensus 289 ~~i~~~L~~~g---------~a~~yyEpe~~ 310 (311)
T 3pz6_A 289 QSCRDLLVQNN---------QCIVYSEPESE 310 (311)
T ss_dssp HHHHHHHHHTT---------CEEEEECC---
T ss_pred HHHHHHHHHCC---------CceEEcccccc
Confidence 99999999999 78999999865
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=343.17 Aligned_cols=170 Identities=20% Similarity=0.211 Sum_probs=137.0
Q ss_pred CCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccce
Q psy5309 973 EMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMS 1050 (1618)
Q Consensus 973 ~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMS 1050 (1618)
+||+.+ ||+||++|.. ++..+| .++||.+|.|++||||+|++++++++++. ++++.++++|++..+|+|||
T Consensus 199 spwG~G-rPGWHiEcsa---m~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~---p~~~~w~H~g~v~~~G~KMS 271 (462)
T 3tqo_A 199 SPWGEG-RPGWHIECSA---MSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK---PFVKLWMHAGLLEINKEKMS 271 (462)
T ss_dssp CTTCSE-EECHHHHHHH---HHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSS---CCEEEEEEECCEEETTEECC
T ss_pred CCCCCC-CCCCceehHH---HHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCC---CcceEEEEccEEecCCcCcc
Confidence 567766 9999999943 345566 79999999999999999999999998874 46777888899999999999
Q ss_pred eccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHH---HhhHHHHHHHHHHHHHhcccCCCCCCCCcchH
Q psy5309 1051 KSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAG---ILRLYTFIEWVKEILATQSTLRTGSQDSFNDK 1127 (1618)
Q Consensus 1051 KS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~---~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~ 1127 (1618)
||+||+|+|.+++++||+|++|||++++ ++.++++|+++.++.+ +++++|+++++.. . . .
T Consensus 272 KSlGN~i~~~dll~~~g~dalR~~lls~-~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~-------~---~----~-- 334 (462)
T 3tqo_A 272 KSLGNIISIREALKESDVEVLRYFLLSG-HYRNPLSYSKENLENGRLALERFYLALRGLPV-------V---N----H-- 334 (462)
T ss_dssp TTTTCCCBHHHHHHHSCHHHHHHHHHHS-CTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC-------------------
T ss_pred ccCCCcccHHHHHhhcChHHhhhhhccC-CCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhh-------c---c----c--
Confidence 9999999999999999999999999976 8999999999987654 4455554433210 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1128 VFLSEMNLKIKETEDHYT-KMLFKEALRTGFFELQAARDKYREL 1170 (1618)
Q Consensus 1128 ~~l~~l~~~i~~v~~~~e-~~~f~~al~~~~~~l~~~~n~Yi~~ 1170 (1618)
..+..+..++.++|+ +++...|+.. ++++++.+|.+++.
T Consensus 335 ---~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~ 374 (462)
T 3tqo_A 335 ---EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDN 374 (462)
T ss_dssp ------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHT
T ss_pred ---hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcc
Confidence 123456778899995 9999999998 79999999988653
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=345.50 Aligned_cols=176 Identities=19% Similarity=0.153 Sum_probs=123.4
Q ss_pred CCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccce
Q psy5309 973 EMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMS 1050 (1618)
Q Consensus 973 ~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMS 1050 (1618)
++|+.+ ||+||++|.. ++..++ .+|||.+|.|++||||+|+++++.++++. ++.+.++++|||+.+|+|||
T Consensus 229 spwG~G-rPGWhiEcsa---m~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g~---~~~~~w~H~g~v~~~G~KMS 301 (501)
T 3sp1_A 229 SPWGFG-YPSWHLECAA---MNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNK---KWCDVFVHGEFLIMDYNKMS 301 (501)
T ss_dssp CTTCSE-EECHHHHHHH---HHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTS---CCCSEEEEECCEECC-----
T ss_pred CCCCCC-CCCchHHHHH---HHHHHcCCCceEEeeccccccchHHHHHHHHHHccCC---CCCeEEEEeeeEeeCCeEcc
Confidence 678777 9999999943 455666 67999999999999999999999998863 45566666699999999999
Q ss_pred eccCcccChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHhh-------HHHHHHHHHHHHHhcccCCCCCCC
Q psy5309 1051 KSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGILR-------LYTFIEWVKEILATQSTLRTGSQD 1122 (1618)
Q Consensus 1051 KS~GNvV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~k-------l~N~~~~l~~~l~~~~~~~~~~~~ 1122 (1618)
||+||+|+|.+++++ ||+|++|||+++. ++.+|++|+++.++.+.+. |+|+++++.......... ....
T Consensus 302 KSlGN~it~~dll~~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~-~~~~- 378 (501)
T 3sp1_A 302 KSRGNFITVKDLEDQNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK-DLKN- 378 (501)
T ss_dssp -----CCCHHHHHHTTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS-CTTS-
T ss_pred ccCCCcCCHHHHHhcCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc-cccc-
Confidence 999999999999999 9999999999988 9999999999988765554 444444332221110000 0000
Q ss_pred CcchHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHH
Q psy5309 1123 SFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAAR 1164 (1618)
Q Consensus 1123 ~~~D~~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~ 1164 (1618)
.+ ...+..+..++.++| ++++...|+.. ++++++..
T Consensus 379 --~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~~~~~ 415 (501)
T 3sp1_A 379 --FG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEIIKSD 415 (501)
T ss_dssp --CS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHCS
T ss_pred --hh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHh
Confidence 00 123456777889999 59999999998 67777644
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=363.47 Aligned_cols=461 Identities=26% Similarity=0.440 Sum_probs=288.5
Q ss_pred CCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHH
Q psy5309 43 DKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRF 120 (1618)
Q Consensus 43 ~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~ 120 (1618)
+||+++.|.||+||.+||||.+++ .++|+.+| .++.+|.|+++|.+ .+|.++-+-|.....+|
T Consensus 34 ~~~~i~~~~Py~nG~lHiGH~~~~----------~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~----- 98 (810)
T 1wkb_A 34 KKFYITVAFPYLSGHLHVGHARTY----------TIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRD----- 98 (810)
T ss_dssp GEEEEEECCCBTTSCCBHHHHHHH----------HHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTC-----
T ss_pred CcEEEEeCCCCCCCCCccccchhH----------HHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccC-----
Confidence 379999999999999999998887 44555555 34788999998877 67777654332211100
Q ss_pred HHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHH
Q psy5309 121 NRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQ 200 (1618)
Q Consensus 121 ~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~ 200 (1618)
-+..... .+.+|++. ..+ -++....+.+...... +
T Consensus 99 ------------------~~~~~~~------~~~~g~~~----------------~~~----~~~~~~~~~~~~~~~~-~ 133 (810)
T 1wkb_A 99 ------------------PKTIWIY------RDVYKVPE----------------EIL----WTFEDPINIVKYFMKA-A 133 (810)
T ss_dssp ------------------HHHHHHH------HHTSCCCH----------------HHH----HGGGSHHHHHHHHHHH-H
T ss_pred ------------------chHHHHH------HHHhCCCH----------------HHH----HHHHHHHHHHHHHHHH-H
Confidence 0111000 01123220 000 0112334455554443 3
Q ss_pred HHHHHhcCCCHHHHHHHhhhh--hHHhhchhHHHHHHHHcCCccc------ccCceeecCCChhhhHHHHHHHHHHHhcC
Q psy5309 201 WQIMQSLGLEDDEIRKFADAS--HWLDHFPPLAVQDLRSIGIHVD------WRRTFITTDSNPFFDSFVRWQFMRLRDRH 272 (1618)
Q Consensus 201 ~~~~~~~g~~~~e~~~f~~~~--~~~~~~~~~~~~~l~~lGi~~D------w~~~~~T~d~~p~y~~~v~~~f~~L~~kG 272 (1618)
.+.++++|++.||.+.+.+.. +....+..+++.+|.+-|+.+- |...-.|.-.|-+. +.|
T Consensus 134 ~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev------------~~~ 201 (810)
T 1wkb_A 134 KETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL------------MEG 201 (810)
T ss_dssp HHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCC------------SBC
T ss_pred HHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHH------------hcC
Confidence 567899999999888877666 7788899999999999997654 44333333222100 001
Q ss_pred c-cc-----------c----CceeEEEecCCCCcccchhhccCCCCCCe-eEEEEEEeeccCCccccccCCCCCcEEEEe
Q psy5309 273 K-IK-----------Y----GKRYTVFSPRDNQPCMDHDRASGEGVGPQ-EYTLIKMRLVKPYPAKLCCLDSKPVFLVAA 335 (1618)
Q Consensus 273 ~-iy-----------~----g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 335 (1618)
. +. . +...+.|..+-.|-.++-=+.- .|. .|+.++.. + ...+..++++
T Consensus 202 ~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~av~v----~P~~~y~~~~~~--~---------~~~~~~~i~~ 266 (810)
T 1wkb_A 202 EDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV----NPNATYVKAKVR--R---------KDKEETWIVS 266 (810)
T ss_dssp SSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCCEEEE----CTTSCEEEEEEE--E---------TTEEEEEEEE
T ss_pred CCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhhEEEE----CCCCcEEEEEec--C---------CCcceeeeeH
Confidence 0 00 0 1235556666555554422211 111 12222110 0 0000111121
Q ss_pred ecCccccccC-ceEEe----CC-CC-CceeecccCCccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcC--------
Q psy5309 336 TLRPETMYGQ-TNAWV----RP-DM-AYIALSCLDSKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTA-------- 399 (1618)
Q Consensus 336 TTrPeTl~g~-~avaV----~P-~~-~Y~~~~~~~~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~-------- 399 (1618)
..+-+.+... ..+-+ .. +. .-...+|+.+++++|+++ .|.++ +|||+|+++|+|+..||...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~--~GTG~V~~~Pah~~~D~~~~~~~~~~~~ 344 (810)
T 1wkb_A 267 KEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPD--NATGVVMSVPAHAPFDHVALEDLKRETE 344 (810)
T ss_dssp HHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTT--STTSCEEECTTTCHHHHHHHCCCSCCSC
T ss_pred HHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCC--CCceeEEeCCCCCHHHHHHHHhhccchh
Confidence 1111111000 00000 00 00 011234667888888776 47777 99999999999998887521
Q ss_pred ----CC----------cEEEeccc---------------------------------------cc-cccccCCCchhhhH
Q psy5309 400 ----TG----------EVFVCTER---------------------------------------SA-RNMAYQGFTEVEGK 425 (1618)
Q Consensus 400 ----~~----------~~~i~~~~---------------------------------------~~-~~~~~~g~~~~~a~ 425 (1618)
.| .+.+++.+ +. ....|+|+.+++|+
T Consensus 345 ~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~ 424 (810)
T 1wkb_A 345 ILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVK 424 (810)
T ss_dssp CCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHH
T ss_pred HHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhH
Confidence 01 11111100 00 02358999999999
Q ss_pred HHHhhhhccCc-------------ceecCCEEEec-cccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccc
Q psy5309 426 INVLLRLTGQV-------------CIRSGDECVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLH 491 (1618)
Q Consensus 426 ~~ii~~l~~~~-------------l~r~g~~i~~~-l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 491 (1618)
..|++.|+..+ |+|||++++++ +++|||+++++++++..+.+++++++++|+..++.+.+|++|++
T Consensus 425 ~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~ 504 (810)
T 1wkb_A 425 EAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLD 504 (810)
T ss_dssp HHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHHhhccc
Confidence 99999997643 56999998888 79999999998788889999999999999999999999999999
Q ss_pred cceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccC------C
Q psy5309 492 EYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKS------A 565 (1618)
Q Consensus 492 dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~------~ 565 (1618)
|||||||++||+||||++.|.+++++|+++|++++.+++.+.. +.+. ..+++++.++.+|||+|+.. .
T Consensus 505 Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~d~~~~~~~~~g~~~ 578 (810)
T 1wkb_A 505 KKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINK--LRQE----GKLDPEKLTPEFFDYIFLEEFSEDKEK 578 (810)
T ss_dssp CEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHH--HHHT----TCCCGGGCCHHHHHHHHHSCCCHHHHH
T ss_pred CccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHH--hHhh----cCCCHHHcCccceeeeeccccccCccc
Confidence 9999999999999999999999999999999988887764420 0000 12456677889999998641 0
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceecccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~ 598 (1618)
++.+.+|+|...+.+++++|++|||.|+.+.|.
T Consensus 579 ~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~ 611 (810)
T 1wkb_A 579 ELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGK 611 (810)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEG
T ss_pred cchhhhCCCHHHHHhhHHHHHhhCCceEEeecc
Confidence 111234677777778889999999999999886
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=355.45 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=192.9
Q ss_pred hCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCc
Q psy5309 1208 LGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVE 1286 (1618)
Q Consensus 1208 Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~ 1286 (1618)
.|+|+ |++|+.+++..+....+..||+.+.+|||+++ +|+|||||+||||+|.+++++||||++||||++.+++.+
T Consensus 550 ~G~D~---~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~ 626 (821)
T 1ile_A 550 EGIDQ---TRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEA 626 (821)
T ss_dssp EEGGG---GGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSS
T ss_pred chhhh---hccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCC
Confidence 36675 67888877665543335568999999999999 999999999999999999999999999999999988999
Q ss_pred CcccCHHHHHHH-HHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccc-c-CCCCCCCcchH
Q psy5309 1287 DANFVESMADAA-VKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQST-L-RTGSQDSFNDK 1363 (1618)
Q Consensus 1287 D~~fs~~~l~~~-~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~ 1363 (1618)
|++||++.+++. .+.+|.. +|.++|+..+. .+++..+ . .....+...|+
T Consensus 627 d~~fs~~~l~~~~~~~~~kl------------~N~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~d~ 678 (821)
T 1ile_A 627 DRRFGPNLVRETVRDYFLTL------------WNVYSFFVTYA----------------NLDRPDLKNPPPPEKRPEMDR 678 (821)
T ss_dssp CEECCHHHHHHHHHHTHHHH------------HHHHHHHHHHH----------------HHHCCCTTSCCCSTTSCHHHH
T ss_pred CcEecHHHHHHHHHHHHHHH------------HHHHHHHHHhh----------------ccccCCcccccccccCCHHHH
Confidence 999999988773 4333321 11123322110 1111111 0 00123567899
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHH
Q psy5309 1364 VFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVE 1441 (1618)
Q Consensus 1364 ~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~ 1441 (1618)
|++++++.+++++.++|++|+|++|++.++ +|+ .++|+|++.++
T Consensus 679 ~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~-~f~~~~~~n~Yl~~~k--------------------------------- 724 (821)
T 1ile_A 679 WLLARMQDLIQRVTEALEAYDPTTSARALR-DFVVEDLSQWYVRRNR--------------------------------- 724 (821)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHSSTTTHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHHhh---------------------------------
Confidence 999999999999999999999999999985 998 57888886654
Q ss_pred HHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCC--
Q psy5309 1442 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK-- 1519 (1618)
Q Consensus 1442 ~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~-- 1519 (1618)
+|+|....+.+|+ .++++|.++|+.+++|||||+||+|||+|+.|+.
T Consensus 725 ----------------------~~~~~~~~~~~r~---------~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~ 773 (821)
T 1ile_A 725 ----------------------RRFWKNEDALDRE---------AAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV 773 (821)
T ss_dssp ----------------------HHHHTCTTTSSTT---------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTT
T ss_pred ----------------------hhcccCCCcHHHH---------HHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccc
Confidence 4444332211221 3566788999999999999999999999999874
Q ss_pred ---CC-ceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1520 ---KG-SIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVK 1557 (1618)
Q Consensus 1520 ---~~-sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~ 1557 (1618)
.+ ||+.+.||+.++ .|+.++++++.+++++.++|+.++
T Consensus 774 ~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r~~r~ 817 (821)
T 1ile_A 774 RLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARA 817 (821)
T ss_dssp STTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cCCCCCceEeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 25 999999999874 589999999999997777776543
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=299.50 Aligned_cols=246 Identities=48% Similarity=0.806 Sum_probs=185.9
Q ss_pred CCCCeeEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccC
Q psy5309 301 GVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMY 380 (1618)
Q Consensus 301 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~ 380 (1618)
+++|++|+.++|++.++++.....+.+.+.+|+||||||||||||+||||||++.|+.+... +++.+|++..
T Consensus 1 ~~~~~e~~~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~-~~~~~i~a~~------- 72 (252)
T 2wfd_A 1 AMGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETV-NGDIFICTQK------- 72 (252)
T ss_dssp CCCCCEEEEEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECT-TSCEEEECHH-------
T ss_pred CCCceEEEEEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEec-CCcEEEEhhh-------
Confidence 36799999999998877665555565667899999999999999999999999999987531 2234444332
Q ss_pred CCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCch
Q psy5309 381 GQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPT 460 (1618)
Q Consensus 381 Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~ 460 (1618)
...++.|++........+++.+++|..+. |..+.++++.+
T Consensus 73 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~G~~l~--G~~~~~Pl~~~--------- 112 (252)
T 2wfd_A 73 -----------------------------AARNMSYQGFTKDNGVVPVVKELMGEEIL--GASLSAPLTSY--------- 112 (252)
T ss_dssp -----------------------------HHHHHHTTTSSSSTTCCCEEEECCHHHHT--TCEEECSSCSS---------
T ss_pred -----------------------------hHHHHHHHHhhccCcccEEEEEEEccccc--CCEEEcCCCCC---------
Confidence 21122222211000011223333333333 55555444310
Q ss_pred HHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccC
Q psy5309 461 WKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 540 (1618)
Q Consensus 461 ~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~ 540 (1618)
..+| ++++
T Consensus 113 ------------------------------------------~~ip--------------------V~~a---------- 120 (252)
T 2wfd_A 113 ------------------------------------------KVIY--------------------VLPM---------- 120 (252)
T ss_dssp ------------------------------------------SCEE--------------------EEEC----------
T ss_pred ------------------------------------------ceeE--------------------EEEe----------
Confidence 0134 5554
Q ss_pred CCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhh
Q psy5309 541 NGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIY 620 (1618)
Q Consensus 541 ~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1618)
++|+++.|||+| |+ +|+|+ ++||.++.+|.++++|+++|
T Consensus 121 ----dyV~~~~GTG~V------~~--------vPaHd------------~~D~~~~~~l~~~~~fa~ky----------- 159 (252)
T 2wfd_A 121 ----LTIKEDKGTGVV------TS--------VPSDS------------PDDIAALRDLKKKQALRAKY----------- 159 (252)
T ss_dssp ----SCCCSSSSCSSE------EE--------CTTTC------------HHHHHHHHHHHHCSHHHHTT-----------
T ss_pred ----CcccCCCCCCeE------EE--------cCCCC------------HHHHHHHhhhccchhHHHHc-----------
Confidence 899999999999 99 99999 99999998887777788888
Q ss_pred hhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhh
Q psy5309 621 MAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLK 700 (1618)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 700 (1618)
||+. +++.++++++||+++++|++++...+++++|.|++|.++|++|++.+|..
T Consensus 160 -------------------gL~~-------~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~ 213 (252)
T 2wfd_A 160 -------------------GIRD-------DMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLK 213 (252)
T ss_dssp -------------------TCCG-------GGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHH
T ss_pred -------------------CCCc-------hhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccc
Confidence 5532 23446778999999999999999999999999999999999999999999
Q ss_pred cccceeeeecccCCcchHHHHHHHHHHHHHhCC
Q psy5309 701 GFYDGIMLVGEFKGKKVQEVKKLLQKKIDIIGV 733 (1618)
Q Consensus 701 ~~~~G~~~~~~~~G~~v~~a~~~i~~~L~~~g~ 733 (1618)
+|++|+|+.|+|+|+++++||++|+++|+++|+
T Consensus 214 ~~~~G~~~~~~~~Gl~v~eA~~~Ii~~L~~~g~ 246 (252)
T 2wfd_A 214 GFYEGIMLVDGFKGQKVQDVKKTIQKKMIDAGD 246 (252)
T ss_dssp HHHHCEECSTTSTTCBHHHHHHHHHHHHHHTTS
T ss_pred cccCceEeeeccCCeEHHHHHHHHHHHHHHCCC
Confidence 999999998899999999999999999999994
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=310.89 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=108.4
Q ss_pred cCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEc-cceeeCCccceeccCcc
Q psy5309 980 RANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN-GHLLLNSAKMSKSEGNF 1056 (1618)
Q Consensus 980 r~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~h-G~vl~~G~KMSKS~GNv 1056 (1618)
||+||++|.. +...++ ..++|.+|.|++|+||.|.++++.++++..+ |.++++| |||+.+|+|||||+||+
T Consensus 226 ~pgWhiec~a---~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~---~~~~~~h~g~v~~~G~KMSKS~GN~ 299 (414)
T 3c8z_A 226 RPGWHVECSA---IALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERR---FARHYVHTGMIGWDGHKMSKSRGNL 299 (414)
T ss_dssp EECHHHHHHH---HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSC---SEEEEEEECCBC-------------
T ss_pred CCCccchhHH---HHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCC---cCeEEEEcCEEecCCeEcccccCCc
Confidence 4556666632 223333 4566777777788999999999998865322 5667777 89999999999999999
Q ss_pred cChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHh---hHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHH
Q psy5309 1057 LTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGIL---RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132 (1618)
Q Consensus 1057 V~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~---kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~ 1132 (1618)
|+|.+++++ ||+|++|||+++ +++.+|++|+++.+.+..+ +++|+++++ . .+ .
T Consensus 300 v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~-------~----~~-----------~ 356 (414)
T 3c8z_A 300 VLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANARLARWRSATALP-------E----AP-----------D 356 (414)
T ss_dssp CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS-------C----BS-----------C
T ss_pred CCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc-------c----ch-----------h
Confidence 999999999 999999999998 6999999999998765444 444443221 0 00 1
Q ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHH
Q psy5309 1133 MNLKIKETEDHY-TKMLFKEALRTGFFELQAARDK 1166 (1618)
Q Consensus 1133 l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~ 1166 (1618)
++.+++++.++| ++|+|++|++. ++++++.+|.
T Consensus 357 ~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~n~ 390 (414)
T 3c8z_A 357 ATDVIARVRQYLADDLDTPKALAA-LDGWCTDALS 390 (414)
T ss_dssp CHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHh
Confidence 257788999999 89999999998 7899988887
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=323.05 Aligned_cols=212 Identities=19% Similarity=0.211 Sum_probs=174.3
Q ss_pred HhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCc
Q psy5309 1207 LLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVE 1286 (1618)
Q Consensus 1207 ~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~ 1286 (1618)
..|+|+..+|..+|++.+... +.++|+.+.+|||+.++|+|||||+||||+|.+++++||||+|||||++.+++++
T Consensus 283 ~~G~D~~~fh~~~~~a~l~~~----g~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~ 358 (542)
T 3u1f_A 283 VIGKDILKFHAIYWPAFLLSA----GLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358 (542)
T ss_dssp EEEGGGHHHHHTHHHHHHHHH----TCCCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTS
T ss_pred EecccccccccchhHHHHHhh----cccccceeccccceecCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccc
Confidence 459999999999999876664 4578999999999888999999999999999999999999999999999889999
Q ss_pred CcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHH
Q psy5309 1287 DANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFL 1366 (1618)
Q Consensus 1287 D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il 1366 (1618)
|++||++.+.+ .+|+. |.|. ++|.++|+..+.. .+++ ..+....+..+|+|++
T Consensus 359 d~~fs~~~~~~---~~n~~-----l~n~--l~N~~~r~~~~~~---------------~~~~--~~~~~~~~~~~d~~il 411 (542)
T 3u1f_A 359 DGDYSDKNMIA---RLNGE-----LADT--LGNLVMRCTSAKI---------------NVNG--EWPSPAAYTEEDESLI 411 (542)
T ss_dssp CCEECHHHHHH---HHHHT-----TTTT--HHHHHHHHHCTTT---------------STTS--BCCCCCCCCHHHHHHH
T ss_pred cccccHHHHHH---HhhhH-----HHHH--HHHHHHHHHHhhh---------------cccC--CCCccchhhHHHHHHH
Confidence 99999997654 44443 2222 2222566543321 1222 2334456778899999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchhhH
Q psy5309 1367 SEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPHVA 1437 (1618)
Q Consensus 1367 ~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~~a 1437 (1618)
++++++++++.++|++|+|++|+++++ +|+..+|.|++..+||... ..++++++++.+++||+||||++|
T Consensus 412 ~~l~~~~~~~~~~~~~~~~~~a~~~i~-~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~a 490 (542)
T 3u1f_A 412 QLIKDLPGTADHYYLIPDIQKAIIAVF-DVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKS 490 (542)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 999999999999999999999999985 9999999999999988641 226788999999999999999999
Q ss_pred HHHHHHhcccccc
Q psy5309 1438 EHVEMNLKIKETE 1450 (1618)
Q Consensus 1438 ~~i~~~L~~~~~~ 1450 (1618)
++|+++||++...
T Consensus 491 eei~~~Lg~~~~~ 503 (542)
T 3u1f_A 491 VVIFDMLGVPEVH 503 (542)
T ss_dssp HHHHHHHTCCGGG
T ss_pred HHHHHHCCCCCcc
Confidence 9999999987653
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=326.34 Aligned_cols=235 Identities=19% Similarity=0.202 Sum_probs=159.7
Q ss_pred ccchhhhhhhcccCCCCCCcccceeccccccc-----------------------------------------------c
Q psy5309 1216 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-----------------------------------------------N 1248 (1618)
Q Consensus 1216 h~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-----------------------------------------------~ 1248 (1618)
|+.||.+++...--..+..||++|++||||++ +
T Consensus 548 y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (878)
T 2v0c_A 548 YSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHED 627 (878)
T ss_dssp HHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTT
T ss_pred HHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCC
Confidence 34566654432211235688999999999997 7
Q ss_pred c-------cccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchh
Q psy5309 1249 S-------AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDA 1321 (1618)
Q Consensus 1249 G-------~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~ 1321 (1618)
| +|||||+||||+|.++|++||||++|||+++.+++++|++||++.+++..+.++..
T Consensus 628 G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl---------------- 691 (878)
T 2v0c_A 628 GTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRI---------------- 691 (878)
T ss_dssp SSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHH----------------
T ss_pred CCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHH----------------
Confidence 9 99999999999999999999999999999997899999999999988866555522
Q ss_pred hHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Q psy5309 1322 NFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARD 1401 (1618)
Q Consensus 1322 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n 1401 (1618)
++++.+....++..........+...|+|+++++++++++++++|++|+|++|+++++ +|++..|
T Consensus 692 --------------~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~-~f~~~l~ 756 (878)
T 2v0c_A 692 --------------YRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALM-EFLNALY 756 (878)
T ss_dssp --------------HHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHH
T ss_pred --------------HHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHh
Confidence 2222221122211111111223567899999999999999999999999999999984 8886444
Q ss_pred HHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhh
Q psy5309 1402 KYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA 1481 (1618)
Q Consensus 1402 ~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 1481 (1618)
.|.+..
T Consensus 757 k~~~~~-------------------------------------------------------------------------- 762 (878)
T 2v0c_A 757 EYRKDR-------------------------------------------------------------------------- 762 (878)
T ss_dssp HHHHHC--------------------------------------------------------------------------
T ss_pred hhcccc--------------------------------------------------------------------------
Confidence 442100
Q ss_pred hhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1482 AEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKNHIL 1561 (1618)
Q Consensus 1482 ~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~~~e 1561 (1618)
..++++.++|+.+++|||||+||+|||+|+.|+ ++||+.+.||+.++. ...++.++.+++ +|..+...++
T Consensus 763 ----~~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-~~sv~~~~wP~~d~~-~l~~~~~~~~vq----vngkvR~~i~ 832 (878)
T 2v0c_A 763 ----PVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-PDSLFEAGWPELDEK-ALEKDVVEVAVQ----VNGAVAGTIH 832 (878)
T ss_dssp ----CSCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-SSCGGGSCCCCCCGG-GGC-----------------------
T ss_pred ----hhHHHHHHHHHHHHHHHcccchHHHHHHHHHcC-CCceeecCCCCCCHH-HHHHHHHHHHHh----hHHHHHHHcc
Confidence 012567899999999999999999999999998 789999999997641 112344555565 4444444444
Q ss_pred Hhhc
Q psy5309 1562 TASK 1565 (1618)
Q Consensus 1562 ~~r~ 1565 (1618)
.++.
T Consensus 833 v~~~ 836 (878)
T 2v0c_A 833 IPKD 836 (878)
T ss_dssp ----
T ss_pred cCcC
Confidence 4443
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=294.29 Aligned_cols=142 Identities=22% Similarity=0.238 Sum_probs=111.3
Q ss_pred ccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccc
Q psy5309 1006 FSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDA 1085 (1618)
Q Consensus 1006 ~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~ 1085 (1618)
|.|++||||+|+++++.++++ .++|+.+++|||++.+|+|||||+||+|+|.+++++||+|++|||+++ +++.+|+
T Consensus 227 G~Dl~fpH~~~~~aq~~a~~g---~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~-~~~~~~~ 302 (461)
T 1li5_A 227 GSDLMFPHHENEIAQSTCAHD---GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMS-GHYRSQL 302 (461)
T ss_dssp BGGGTTTHHHHHHHHHHHHSS---SCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHS-SCTTSCE
T ss_pred cCccCchHHHHHHHHHHHhcC---CCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHc-CCcCCCC
Confidence 334455667777777776654 346888889999999999999999999999999999999999999998 5899999
Q ss_pred cccHHHHHHHHh---hHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHH
Q psy5309 1086 NFVESMADAGIL---RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQ 1161 (1618)
Q Consensus 1086 ~fs~~~~~~~~~---kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~ 1161 (1618)
+|+++.+.+..+ +++|+++++ . ... + . | .+..+.+.+.++| ++|+++.|+.. +++++
T Consensus 303 ~fs~~~l~~~~~~l~rl~n~~~~~----~--~~~---~---~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~ 363 (461)
T 1li5_A 303 NYSEENLKQARAALERLYTALRGT----D--KTV---A---P-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMA 363 (461)
T ss_dssp EECHHHHHHHHHHHHHHHHHHTTC----C--TTS---C---C-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh----h--cCC---C---H-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHH
Confidence 999998765443 444443322 0 011 1 1 2 3667888999999 99999999998 79999
Q ss_pred HHHHHHHHH
Q psy5309 1162 AARDKYREL 1170 (1618)
Q Consensus 1162 ~~~n~Yi~~ 1170 (1618)
+.+|.|++.
T Consensus 364 ~~~N~~~~~ 372 (461)
T 1li5_A 364 REVNRLKAE 372 (461)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999965
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=281.24 Aligned_cols=123 Identities=36% Similarity=0.559 Sum_probs=108.4
Q ss_pred ccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhh
Q psy5309 545 LNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYY 624 (1618)
Q Consensus 545 ~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1618)
++|+++.|||+| |+ +|+|+ ++||.++.+|++++.+ |
T Consensus 124 dyV~~~~GTG~V------~~--------vPaHd------------~~Dy~~~~kl~~~~~~---y--------------- 159 (261)
T 2wfg_A 124 ETVLATKGTGVV------TC--------VPSDS------------PDDFVTTRDLANKPEY---Y--------------- 159 (261)
T ss_dssp TTCCTTSTTSCE------EE--------CTTTC------------HHHHHHHHHHHHSTTT---T---------------
T ss_pred ccccCCCCCCee------EE--------cCCCC------------HHHHHHHHHhhcchhh---c---------------
Confidence 899999999999 99 99999 9999999886655433 4
Q ss_pred hhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccc
Q psy5309 625 TVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYD 704 (1618)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 704 (1618)
|+.. +++ +++++++|+.+++|++++..++++++|.||+|.++|++|++.+|++||+.
T Consensus 160 ---------------gi~~-------~~~-~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~ 216 (261)
T 2wfg_A 160 ---------------GIEK-------DWV-QTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYN 216 (261)
T ss_dssp ---------------TCCG-------GGC-CCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCcc-------ccc-cCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhccccc
Confidence 4321 123 46678889989999999999999999999999999999999999999999
Q ss_pred eeeeecccCCcchHHHHHHHHHHHHHhCCc
Q psy5309 705 GIMLVGEFKGKKVQEVKKLLQKKIDIIGVA 734 (1618)
Q Consensus 705 G~~~~~~~~G~~v~~a~~~i~~~L~~~g~~ 734 (1618)
|.|++|+|+|+++++||+.|+++|+++|++
T Consensus 217 g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~ 246 (261)
T 2wfg_A 217 GTMLIGKYKGDKVEDAKPKVKQDLIDEGLA 246 (261)
T ss_dssp CEECSSTTTTSBHHHHHHHHHHHHHHTTSE
T ss_pred ceEeccccCCeEHHHHHHHHHHHHHHCCCe
Confidence 999899999999999999999999999964
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=308.37 Aligned_cols=215 Identities=18% Similarity=0.218 Sum_probs=175.7
Q ss_pred HHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCC
Q psy5309 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1205 ~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~ 1284 (1618)
.+..|+|+..+|..+||+.+.+. +..||+.|++|||+..+|+|||||+||||+|.+++++||+|++||||++.++.
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a~----g~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~ 372 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMSA----ELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNF 372 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHT----TCCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCS
T ss_pred eEEEeecccchHHHHHHHHHHhC----CCCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCc
Confidence 45679999999999999876653 45789999999999669999999999999999999999999999999997799
Q ss_pred CcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHH
Q psy5309 1285 VEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKV 1364 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 1364 (1618)
++|++||++.+.+ ..|++ |. ++++|.++|+.++.. .+++. .+....+...|+|
T Consensus 373 ~~D~~fs~~~~~~---~~n~~-----l~--~~l~N~~~R~~~~~~---------------~~~g~--~p~~~~~~~~d~~ 425 (564)
T 3kfl_A 373 QDDGDYSDKNMVA---RLNGE-----LA--DTLGNLVSRCVAPKI---------------NVNGM--WPEPAEYSESDKT 425 (564)
T ss_dssp SCCEECCHHHHHH---HHHHT-----TT--TTHHHHHHHHHCTTT---------------STTSB--CCCCCCCCHHHHH
T ss_pred ccCCCCCHHHHHH---HHHHH-----HH--HHHHHHHHHHHHHHH---------------hcCCc--CCCCCCCCHHHHH
Confidence 9999999996554 44433 11 122333666655432 12322 2223445678999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchh
Q psy5309 1365 FLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPH 1435 (1618)
Q Consensus 1365 il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~ 1435 (1618)
++++++++++++.++|++|+|++|++.++ +|+.++|+|++.++||... ..++++++++.+++||+||||+
T Consensus 426 ll~~l~~~~~~v~~a~e~~~~~~a~~~i~-~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~ 504 (564)
T 3kfl_A 426 LIASLNNLAGTVDHYYCLPDIQHALIAIF-DVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQ 504 (564)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 99999999999999999999999999984 9999999999999998641 2367899999999999999999
Q ss_pred hHHHHHHHhcccccch
Q psy5309 1436 VAEHVEMNLKIKETED 1451 (1618)
Q Consensus 1436 ~a~~i~~~L~~~~~~~ 1451 (1618)
+|++|+++||+....+
T Consensus 505 ~ae~i~~~Lg~~~~~~ 520 (564)
T 3kfl_A 505 KAKEIMDALGVPEAAR 520 (564)
T ss_dssp HHHHHHHHHTCCGGGS
T ss_pred HHHHHHHHcCCCcccc
Confidence 9999999999976543
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-28 Score=314.23 Aligned_cols=216 Identities=22% Similarity=0.251 Sum_probs=174.1
Q ss_pred HHHhCCCccccccchhhhhhhcccC------CCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeeh
Q psy5309 1205 YQLLGKDLIQNHLTFFIYIHTAIWG------DEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1278 (1618)
Q Consensus 1205 ~~~Lgkd~~svh~~~f~s~~~~~~p------~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l 1278 (1618)
++..|+|+..+|...||..+...-. ..+..+|+.+++|||++++|+|||||+||||+|.+++++||+|+|||||
T Consensus 292 ~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~l 371 (722)
T 1rqg_A 292 IHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYL 371 (722)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHH
T ss_pred EEEccccccccchhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHH
Confidence 3567999999999988876554210 0123567999999999999999999999999999999999999999999
Q ss_pred hccCCCCcCcccCHHHHHHHHHHhhhhhhhhhccc-CCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCC
Q psy5309 1279 ADSGDSVEDANFVESMADAAVKKFSADGMRLCLAD-SGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQ 1357 (1618)
Q Consensus 1279 ~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n-~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1357 (1618)
++.+++++|++||++.+.+ +.|++ |.| +||+ +||+..+. .+.+++. .+....
T Consensus 372 l~~~~~~~D~~fs~~~~~~---~~n~~-----l~~~l~N~---~~R~~~~~--------------~k~~~~~--~~~~~~ 424 (722)
T 1rqg_A 372 TTIMPETRDSDFSFSDFKV---RINEE-----LVNNLGNF---VHRALTFV--------------NRYFDGV--VPERGE 424 (722)
T ss_dssp HHTCCSSSCEEECHHHHHH---HHHHT-----TTTTHHHH---HHHHHHHH--------------HHHSTTB--CCCCCC
T ss_pred HhcCCCCCCCccCHHHHHH---HHHHH-----HHHHHHHH---HHHHHHHH--------------HHhcCCC--CCCccc
Confidence 9998999999999996544 44433 222 2333 56655543 3555543 222234
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHh
Q psy5309 1358 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALL 1428 (1618)
Q Consensus 1358 ~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~l 1428 (1618)
+...|+|++++++++++++.++|++|+|++|+++++ +|++++|+|++.++||... ..++++++++.++.|
T Consensus 425 ~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~-~~~~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~l 503 (722)
T 1rqg_A 425 LDELDREALEEIEKAFKEVGELIMNYRFKDALKRVM-SLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGIL 503 (722)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985 9999999999999998641 225678999999999
Q ss_pred hcCcchhhHHHHHHHhcccc
Q psy5309 1429 LCPVCPHVAEHVEMNLKIKE 1448 (1618)
Q Consensus 1429 l~P~~P~~a~~i~~~L~~~~ 1448 (1618)
|+||||++|++||++|+.+.
T Consensus 504 L~P~~P~~aeei~~~L~~~~ 523 (722)
T 1rqg_A 504 LEPFLPDASEKIWHLLNLDE 523 (722)
T ss_dssp HTTTCHHHHHHHHHHTTCCS
T ss_pred hhccccHHHHHHHHHcCCCc
Confidence 99999999999999999864
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-28 Score=305.34 Aligned_cols=218 Identities=20% Similarity=0.226 Sum_probs=165.6
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV 1285 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~ 1285 (1618)
+..|+|+..+|..+|++.+.+. +..||+.|++||||+++|+|||||+||||+|.+++++||+|++|||+++.++.+
T Consensus 280 ~~~G~D~~~fh~~~~~a~l~a~----g~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~ 355 (536)
T 4dlp_A 280 HIIGKDISRFHAVYWPAFLMSA----QLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFG 355 (536)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHT----TCCCCSCEEEECCEEC------------CCHHHHHHHHCHHHHHHHHHHHSCTT
T ss_pred EEeechHHHHHHHHHHHHHHHC----CCCCCcEEEeeeeEeeCCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 4569999999999998776653 456899999999999999999999999999999999999999999999977999
Q ss_pred cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHH
Q psy5309 1286 EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1365 (1618)
Q Consensus 1286 ~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 1365 (1618)
+|++||++.+.+ ..|.. |. ++++|.++|+.++. .+.+++. .+....+...|+|+
T Consensus 356 ~d~~fs~~~~~~---~~n~~-----l~--~~l~N~~~R~~~~~--------------~~~~~~~--~p~~~~~~~~d~~l 409 (536)
T 4dlp_A 356 QDGSYSHEAIVN---RTNAD-----LA--NDLGNLAQRSLSMI--------------AKNCEGK--VPQPGAFSEADKAI 409 (536)
T ss_dssp SCEECCHHHHHH---HHHHH-----CC--CCCHHHHHHHHHHH--------------HHHSTTB--CCCCCCCCHHHHHH
T ss_pred CCCCCCHHHHHH---HHHHH-----HH--HHHHHHHHHHHHHH--------------HhhcCCC--CCCcccCCHHHHHH
Confidence 999999997654 33322 11 22334466765553 2444433 22234566789999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchhh
Q psy5309 1366 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPHV 1436 (1618)
Q Consensus 1366 l~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~~ 1436 (1618)
+++++++++.+.++|++|+|++|++.++ +|+.++|+|++.++||... ..++++++++.++.||+||||++
T Consensus 410 l~~l~~~~~~v~~a~~~~~~~~a~~~l~-~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~ 488 (536)
T 4dlp_A 410 LDQADAALETARKAMDDQALHLALGAIF-AVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQS 488 (536)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 9999999999999999999999999985 9999999999999987541 22668899999999999999999
Q ss_pred HHHHHHHhcccccchhhh
Q psy5309 1437 AEHVEMNLKIKETEDHYT 1454 (1618)
Q Consensus 1437 a~~i~~~L~~~~~~~~~~ 1454 (1618)
|++|+++||++...+.|.
T Consensus 489 aeei~~~L~~~~~~~~~~ 506 (536)
T 4dlp_A 489 AEKLLDILAVPADKRQFA 506 (536)
T ss_dssp HHHHHHTTTCCTTSCSTH
T ss_pred HHHHHHHcCCCccccCHH
Confidence 999999999976544443
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=305.67 Aligned_cols=226 Identities=18% Similarity=0.249 Sum_probs=172.5
Q ss_pred HHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccC
Q psy5309 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSG 1282 (1618)
Q Consensus 1203 ei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~ 1282 (1618)
++.+.+|+|+..+|..+|+..+... +..+|+.|++||||+++|+|||||+||||+|.+++++||+|++||||++.+
T Consensus 301 ~~~~~~G~D~~~fh~~~~~a~l~~~----g~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~ 376 (560)
T 3h99_A 301 ELYHFIGKDIVYFLSLFWPAMLEGS----NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKL 376 (560)
T ss_dssp EEEEEEEGGGHHHHHTHHHHHHHHT----TBCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHC
T ss_pred eeEEEeccccchhHHHHHHHHHHhC----CCCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhC
Confidence 3456679999999999998766552 235679999999999999999999999999999999999999999999987
Q ss_pred CCC-cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcc
Q psy5309 1283 DSV-EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFN 1361 (1618)
Q Consensus 1283 ~~~-~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1361 (1618)
+.+ +|++||++.+.+ ..|.. ++.+++ |.++|+.++.. +.+++. .+ ....
T Consensus 377 ~~~~~d~~f~~~~~~~---~~~~~----l~~~l~---n~~~R~~~~~~--------------~~~~~~--~~----~~~~ 426 (560)
T 3h99_A 377 SSRIDDIDLNLEDFVQ---RVNAD----IVNKVV---NLASRNAGFIN--------------KRFDGV--LA----SELA 426 (560)
T ss_dssp CSSCCCEEECHHHHHH---HHHHH----CCCCCT---HHHHTTHHHHH--------------HHSTTB--CC----SSCS
T ss_pred CCCCCCCCcCHHHHHH---HHHHH----HHHHHH---HHHHHHHHHHH--------------HhcCCC--CC----Cccc
Confidence 877 899999996543 33322 222224 44677665532 444432 11 1356
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHH
Q psy5309 1362 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVE 1441 (1618)
Q Consensus 1362 D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~ 1441 (1618)
|+|++++++++++.+.++|++|+|+.|++.++ +|++.+|+|++.++||.
T Consensus 427 d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~-~l~~~~n~Yi~~~kpw~------------------------------ 475 (560)
T 3h99_A 427 DPQLYKTFTDAAEVIGEAWESREFGKAVREIM-ALADLANRYVDEQAPWV------------------------------ 475 (560)
T ss_dssp CHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHH------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHhcCchh------------------------------
Confidence 99999999999999999999999999999985 99999999999887531
Q ss_pred HHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCC
Q psy5309 1442 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKG 1521 (1618)
Q Consensus 1442 ~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~ 1521 (1618)
..|.. .+..++. ....++..+|+.+++||+|||||+|||||+.|+-+
T Consensus 476 -------------------l~k~~-----~~~~~~~--------~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~- 522 (560)
T 3h99_A 476 -------------------VAKQE-----GRDADLQ--------AICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE- 522 (560)
T ss_dssp -------------------HTTST-----TCHHHHH--------HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC-
T ss_pred -------------------hcCCc-----CcHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC-
Confidence 01110 0000111 24456789999999999999999999999999732
Q ss_pred ceEeccCCC
Q psy5309 1522 SIVKARWPE 1530 (1618)
Q Consensus 1522 sv~~~~~p~ 1530 (1618)
+.||.
T Consensus 523 ----~~w~~ 527 (560)
T 3h99_A 523 ----LTWDG 527 (560)
T ss_dssp ----CCTGG
T ss_pred ----CChhh
Confidence 56765
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-27 Score=305.37 Aligned_cols=191 Identities=21% Similarity=0.253 Sum_probs=150.3
Q ss_pred CCCcccceecccccc-------c-ccc------------------------------------ccccccCCcCCHHHHHH
Q psy5309 1232 PEMWPRGIRANGHLL-------L-NSA------------------------------------KMSKSEGNFLTLTEAVK 1267 (1618)
Q Consensus 1232 ~~~~p~~v~~hGfvl-------d-~G~------------------------------------KMSKSlGNvI~P~~ii~ 1267 (1618)
...|++.+++||+|+ | +|+ |||||+||||+|.++|+
T Consensus 576 ~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIe 655 (880)
T 4arc_A 576 SDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVE 655 (880)
T ss_dssp CSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHH
T ss_pred CCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHH
Confidence 457899999999997 6 787 99999999999999999
Q ss_pred hcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhh
Q psy5309 1268 KFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA 1347 (1618)
Q Consensus 1268 ~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 1347 (1618)
+||||++|||+++.+++.+|++||++.+++..+.++.. +++..+....
T Consensus 656 kYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rl------------------------------wn~~~~~~~~-- 703 (880)
T 4arc_A 656 RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRV------------------------------WKLVYEHTAK-- 703 (880)
T ss_dssp HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHH------------------------------HHHHHHHHHT--
T ss_pred HcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHH------------------------------HHHHHHHHhc--
Confidence 99999999999999899999999999988766555532 2222221111
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q psy5309 1348 TQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYT-KMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQA 1426 (1618)
Q Consensus 1348 ~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e-~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a 1426 (1618)
+.........+...|+|+++++++++++++++|+ +|+|+.|+++++ +|++..+.|.
T Consensus 704 ~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~-efvn~l~k~~---------------------- 760 (880)
T 4arc_A 704 GDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIM-ELMNKLAKAP---------------------- 760 (880)
T ss_dssp CCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHTSC----------------------
T ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH-HHHHHHHhhh----------------------
Confidence 1111111234567899999999999999999998 899999999974 8874211110
Q ss_pred HhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccch
Q psy5309 1427 LLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVC 1506 (1618)
Q Consensus 1427 ~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~ 1506 (1618)
+. ....+.++..+++.+++|||||+
T Consensus 761 ------------------------------------~~-------------------~~~~~~~l~~~l~~ll~LLaPf~ 785 (880)
T 4arc_A 761 ------------------------------------TD-------------------GEQDRALMQEALLAVVRMLNPFT 785 (880)
T ss_dssp ------------------------------------CS-------------------SHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ------------------------------------cc-------------------chHHHHHHHHHHHHHHHHHhhcc
Confidence 00 00245678899999999999999
Q ss_pred hhHHHHHHHHcCCCCceEeccCCCCC
Q psy5309 1507 PHVAEHVYQLLGKKGSIVKARWPEGG 1532 (1618)
Q Consensus 1507 P~~aEeiw~~l~~~~sv~~~~~p~~~ 1532 (1618)
||+|||+|+.|+..+||+.+.||+.+
T Consensus 786 PhiaEElW~~Lg~~~sv~~~~wP~~d 811 (880)
T 4arc_A 786 PHICFTLWQELKGEGDIDNAPWPVAD 811 (880)
T ss_dssp HHHHHHHHHHTTCSSCGGGSCCCCCC
T ss_pred HHHHHHHHHHcCCCCeEEeCCCCCCC
Confidence 99999999999988999999999976
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=290.44 Aligned_cols=216 Identities=22% Similarity=0.280 Sum_probs=164.3
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV 1285 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~ 1285 (1618)
+..|+|+..+|...|++.+.+. +..||+.+++||||+++|+|||||+||+|+|.+++++||+|++|||+++.+++.
T Consensus 254 ~~~G~D~~~~H~~~~~a~l~~~----g~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~ 329 (497)
T 2csx_A 254 HLVGKDILRFHTVYWPAFLMSL----GYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFG 329 (497)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHH----TCCCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTT
T ss_pred EEeecchhHhHHHHHHHHHHHc----CCCCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcc
Confidence 3458998888988888765443 456899999999999999999999999999999999999999999999977999
Q ss_pred cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHH
Q psy5309 1286 EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1365 (1618)
Q Consensus 1286 ~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 1365 (1618)
+|++||++.+.+ ..|+. |.+. ++|.++|+.++.. +.+++. .+ ...|+|+
T Consensus 330 ~d~~fs~~~l~~---~~~~~-----l~~~--l~n~~~R~~~~~~--------------~~~~~~--~~-----~~~d~~l 378 (497)
T 2csx_A 330 QDGDFSKKAILN---RINGE-----LANE--IGNLYSRVVNMAH--------------KFLGGE--VS-----GARDEEY 378 (497)
T ss_dssp SCEECCHHHHHH---HHHHT-----CCCC--CHHHHHHHHHHHH--------------HHSTTC--BC-----CCCCTTH
T ss_pred cCCCCChHHHHH---HHHHH-----HHHH--HHHHHHHHHHHHH--------------HhcCCC--CC-----chhHHHH
Confidence 999999997765 23322 2222 2233566554422 222221 11 3569999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhc
Q psy5309 1366 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLK 1445 (1618)
Q Consensus 1366 l~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~ 1445 (1618)
+++++++++++.++|++|+|+.|++.++ +|+..+|.|++.++||.
T Consensus 379 ~~~l~~~~~~v~~~~~~~~~~~a~~~l~-~l~~~~n~y~~~~k~~~---------------------------------- 423 (497)
T 2csx_A 379 AKIAQESIKNYENYMEKVNFYKAIEEIL-KFTSYLNKYVDEKQPWA---------------------------------- 423 (497)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHHHHHCHHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHhcCchh----------------------------------
Confidence 9999999999999999999999999985 99999999999887521
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCC
Q psy5309 1446 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKK 1520 (1618)
Q Consensus 1446 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~ 1520 (1618)
..+. .++.++. ....++.++|..+++|||||+||+|||+|+.|+.+
T Consensus 424 ---------------~~~~--------~~~~~~~------~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 424 ---------------LNKE--------RKKEELQ------KVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp ---------------HHTT--------SCHHHHH------HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred ---------------hccc--------ccHHHHH------HHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 0000 0001111 23346778999999999999999999999999743
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=290.57 Aligned_cols=215 Identities=23% Similarity=0.251 Sum_probs=170.4
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV 1285 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~ 1285 (1618)
+..|+|+..+|...|++.+... +..||+.+.+||||+++|+|||||+||+|+|.+++++||+|++|||+++.+++.
T Consensus 269 ~~~G~D~~~fh~~~~~a~l~~~----g~~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~ 344 (524)
T 2x1l_A 269 HMIGKDIIRFHTVYWPAFLMSA----GLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFG 344 (524)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHH----TCCCCSCEEEECCEEECSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTT
T ss_pred EEEeechhHhHHHHHHHHHHHC----CCCCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 4468999888888887765442 346799999999999999999999999999999999999999999999977899
Q ss_pred cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHH
Q psy5309 1286 EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1365 (1618)
Q Consensus 1286 ~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 1365 (1618)
+|++||++.+.+..+. . |.|. ++|.++|+..+.. +.+++. .+........|+|+
T Consensus 345 ~d~~fs~~~l~~~~~~---~-----l~n~--l~n~~~r~~~~~~--------------~~~~~~--~~~~~~~~~~d~~l 398 (524)
T 2x1l_A 345 QDGSYNEDAIIGRVNA---D-----LANE--LGNLAQRSLSMVA--------------KNLGAA--VPDPGEFTDEDTAL 398 (524)
T ss_dssp SCEEECHHHHHHHHHH---C-----CCCC--CHHHHHHHHHHHH--------------HHSTTB--CCCCCCCCHHHHHH
T ss_pred CCCCcCHHHHHHHHHH---H-----HHHH--HHHHHHHHHHHHH--------------HhcCCC--CCCccccchhHHHH
Confidence 9999999987653322 1 2221 2222555444321 333322 22223456789999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc-------------hhHHHHHHHHHHHHhhcCc
Q psy5309 1366 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM-------------HRTLVLRFVEVQALLLCPV 1432 (1618)
Q Consensus 1366 l~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~-------------~~~~~l~~~~~~a~ll~P~ 1432 (1618)
+++++++++.+.++|++|+|+.|++.++ +|+..+|.|++.++||... ..++++++++.++.||+||
T Consensus 399 ~~~l~~~~~~v~~a~~~~~~~~a~~~l~-~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~ 477 (524)
T 2x1l_A 399 LAAADALLERVREHFDVPAMHLALEAIW-SVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPV 477 (524)
T ss_dssp HHHHHTHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999985 9999999999999998431 1256789999999999999
Q ss_pred chhhHHHHHHHhcccccch
Q psy5309 1433 CPHVAEHVEMNLKIKETED 1451 (1618)
Q Consensus 1433 ~P~~a~~i~~~L~~~~~~~ 1451 (1618)
||++|++||+.|+++...+
T Consensus 478 ~P~~aeei~~~L~~~~~~~ 496 (524)
T 2x1l_A 478 MPESTAKLLDLLGQPTDER 496 (524)
T ss_dssp CHHHHHHHHHHTTCCTTSC
T ss_pred hhHHHHHHHHHcCCCcccc
Confidence 9999999999999875433
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-25 Score=279.47 Aligned_cols=207 Identities=21% Similarity=0.209 Sum_probs=164.9
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~ 1284 (1618)
+..|+|+..+|...|++.+.+. +..||+.+++||||++ +|+|||||+||+|+|.+++++||+|++|||+++.+++
T Consensus 255 ~~~G~D~~~fh~~~~~a~~~~~----g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~ 330 (500)
T 2d5b_A 255 HLIGKDILKPHAVFWPTMLKAA----GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPY 330 (500)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHH----TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCT
T ss_pred EEEeechhhhHHHHHHHHHHHc----CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCc
Confidence 3458998888988888765543 3467999999999999 9999999999999999999999999999999997799
Q ss_pred CcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHH
Q psy5309 1285 VEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKV 1364 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 1364 (1618)
.+|++||++.+.+..+. . |.|. ++|.++|...+. .+.+++. .+. ..++|
T Consensus 331 ~~d~~fs~~~~~~~~~~---~-----l~~~--l~n~~~r~~~~~--------------~~~~~~~--~~~-----~~~~~ 379 (500)
T 2d5b_A 331 GQDTPVSEEALRTRYEA---D-----LADD--LGNLVQRTRAML--------------FRFAEGR--IPE-----PVAGE 379 (500)
T ss_dssp TSCEECCHHHHHHHHHH---H-----CCCC--CHHHHHHHHHHH--------------HHHSTTB--CCC-----CCCCG
T ss_pred ccCCCCCHHHHHHHHHH---H-----HHHH--HHHHHHHHHHHH--------------HHhcCCC--CCc-----hhHHH
Confidence 99999999987664332 1 2222 222245544332 1333321 111 11488
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchh
Q psy5309 1365 FLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPH 1435 (1618)
Q Consensus 1365 il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~ 1435 (1618)
++++++++++++.++|++|+|++|++.++ +|+..+|+|++.++||... ..++++++++.++.+|+||||+
T Consensus 380 l~~~l~~~~~~v~~a~~~~~~~~a~~~l~-~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~ 458 (500)
T 2d5b_A 380 ELAEGTGLAGRLRPLVRELKFHVALEEAM-AYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPD 458 (500)
T ss_dssp GGGGGGGHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccH
Confidence 99999999999999999999999999985 9999999999999988531 2367889999999999999999
Q ss_pred hHHHHHHHhcccc
Q psy5309 1436 VAEHVEMNLKIKE 1448 (1618)
Q Consensus 1436 ~a~~i~~~L~~~~ 1448 (1618)
+|++||+.|+.+.
T Consensus 459 ~aeei~~~l~~~~ 471 (500)
T 2d5b_A 459 KMAELRRALGLKE 471 (500)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCCc
Confidence 9999999999864
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=244.95 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=121.8
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHH-HHHHH-hcCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL-KREME-SFGFPPQFPS 163 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~-~~~~~-~~gi~~~~~e 163 (1618)
.+++.+|.+.+|||||+|||||+|+.+++|+++|++++.||+|...+++++.|.|+..++.++ .++.+ ..|.+..+|+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 467899999999999999999999999999999999999999999999999999999998876 33333 3444433444
Q ss_pred CCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc
Q psy5309 164 EDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD 243 (1618)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D 243 (1618)
+ .|+|.+..++|+....++..++. .+++...|. ....+..++.+++++++||+.+|
T Consensus 108 ~-----------------~y~g~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~l~~~~~~~~~l~V~fD 163 (464)
T 3fnr_A 108 Q-----------------YYKGEYIVDLAKEAFEKFGKEFF-----SEENIPSLA--DWAKDKMLVLIKQNLEQAKIKID 163 (464)
T ss_dssp S-----------------CCCSHHHHHHHHHHHHHHCGGGC-----SGGGHHHHH--HHHHHHHHHHHHHHHHHTTCCCS
T ss_pred h-----------------hcCccHHHHHHHHHHHhcchhhc-----CcHHHHHHH--HHHHHHHHHHHHHHHHHhCCCce
Confidence 3 68899999888776655311110 122222332 23356678899999999999999
Q ss_pred -ccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 244 -WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 244 -w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
|..|- ..|. .+..++..|.++|++|+
T Consensus 164 ~~~~Es------s~~~-~~~~vv~~L~~~g~~~e 190 (464)
T 3fnr_A 164 SYVSER------SYYD-ALNATLESLKEHKGIYE 190 (464)
T ss_dssp CEEEGG------GGST-THHHHHHHHHHTTCEEE
T ss_pred eecCHH------HHHH-HHHHHHHHHHHCCCEEE
Confidence 54442 2244 78999999999999985
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-19 Score=224.60 Aligned_cols=136 Identities=12% Similarity=0.091 Sum_probs=106.1
Q ss_pred EEEEccceeeCCccceeccCcccChHHHHhh-------------------------cCccceEEeecccCcccccccccH
Q psy5309 1035 GIRANGHLLLNSAKMSKSEGNFLTLTEAVKK-------------------------FSADGMRLCLADSGDSVEDANFVE 1089 (1618)
Q Consensus 1035 ~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~-------------------------yGaDalRl~l~~~~~~~~D~~fs~ 1089 (1618)
..+.||||+.+|+|||||+||+|++.+++++ +|.|++|||+++. .+.+|++|++
T Consensus 381 ~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~-~~~~~~~Fd~ 459 (592)
T 1iq0_A 381 HHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT-EPKKQIDFRY 459 (592)
T ss_dssp EEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS-CTTSCEEECH
T ss_pred EEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhc-CCCCCCeecH
Confidence 3567899999999999999999999999999 9999999999987 5689999999
Q ss_pred HHHHHHH----hhHHHHHHHHHHHHHhcccCCCCC--CCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy5309 1090 SMADAGI----LRLYTFIEWVKEILATQSTLRTGS--QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAA 1163 (1618)
Q Consensus 1090 ~~~~~~~----~kl~N~~~~l~~~l~~~~~~~~~~--~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~ 1163 (1618)
+.+.+.. ..+.+...|+.+++.+........ .....+..++..+..+.+.+.+++++++++.++.. ++++...
T Consensus 460 d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~y-l~~La~~ 538 (592)
T 1iq0_A 460 QEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQY-LLDLAAS 538 (592)
T ss_dssp HHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHH-HHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHH
Confidence 9875432 255556678888877643111000 11334667888899999999999999999999998 7999999
Q ss_pred HHHHHHHhc
Q psy5309 1164 RDKYRELTA 1172 (1618)
Q Consensus 1164 ~n~Yi~~~k 1172 (1618)
.|.|.+.++
T Consensus 539 fn~fy~~~~ 547 (592)
T 1iq0_A 539 WNAYYNARE 547 (592)
T ss_dssp HHHHHHCEE
T ss_pred HHHHHHhcc
Confidence 999999884
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=210.93 Aligned_cols=136 Identities=13% Similarity=-0.043 Sum_probs=107.0
Q ss_pred EEEEccceeeCCccceeccC--cccChHHHHhh---------------------------cCccceEEeecccCcccccc
Q psy5309 1035 GIRANGHLLLNSAKMSKSEG--NFLTLTEAVKK---------------------------FSADGMRLCLADSGDSVEDA 1085 (1618)
Q Consensus 1035 ~v~~hG~vl~~G~KMSKS~G--NvV~p~eii~~---------------------------yGaDalRl~l~~~~~~~~D~ 1085 (1618)
..+.||+|+.+|+|||||+| |+|++.+++++ +|.|++||++++. .+.+|+
T Consensus 411 ~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~-~~~~~~ 489 (629)
T 2zue_A 411 YHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKY-SPDKKI 489 (629)
T ss_dssp EEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSS-CTTSCE
T ss_pred EEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhc-CCCCCC
Confidence 46778999999999999999 99999999999 9999999999987 678999
Q ss_pred cccHHHHHHH----HhhHHHHHHHHHHHHHhcccCC------------CCCCCCcchHHHHHHHHHHHHHHHHHHhhccH
Q psy5309 1086 NFVESMADAG----ILRLYTFIEWVKEILATQSTLR------------TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLF 1149 (1618)
Q Consensus 1086 ~fs~~~~~~~----~~kl~N~~~~l~~~l~~~~~~~------------~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f 1149 (1618)
+|+++.+.+. ..-+.+...|+.+++.+..... ........+..++..+..+.+.+.++++++++
T Consensus 490 ~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p 569 (629)
T 2zue_A 490 IFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKP 569 (629)
T ss_dssp ECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred eecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9999876421 2234455566666665421100 01112345677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy5309 1150 KEALRTGFFELQAARDKYRELTA 1172 (1618)
Q Consensus 1150 ~~al~~~~~~l~~~~n~Yi~~~k 1172 (1618)
+.++.. ++++....|.|.+.+.
T Consensus 570 ~~l~~y-l~~La~~fn~fy~~~~ 591 (629)
T 2zue_A 570 HLIAWF-ANELASLFNKFYMDHP 591 (629)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHCC
T ss_pred HHHHHH-HHHHHHHHHHHHHhcc
Confidence 999998 7899999999988764
|
| >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-18 Score=189.62 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=30.6
Q ss_pred CcEEEEeecCccccccCceEEeCCCCCceeecc
Q psy5309 329 PVFLVAATLRPETMYGQTNAWVRPDMAYIALSC 361 (1618)
Q Consensus 329 ~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~ 361 (1618)
+.+|+||||||||||||+||||||++.|+.+..
T Consensus 22 ~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~ 54 (186)
T 1wny_A 22 KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV 54 (186)
T ss_dssp SEEEEEEESCGGGGGGCCEEEECTTSEEEEEEE
T ss_pred CcEEEEEECCcchhhcceEEEECCCCcEEEEEe
Confidence 468999999999999999999999999998854
|
| >1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-16 Score=162.26 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=24.4
Q ss_pred CcEEEEeecCccccccCceEEeCCCC
Q psy5309 329 PVFLVAATLRPETMYGQTNAWVRPDM 354 (1618)
Q Consensus 329 ~~~l~i~TTrPeTl~g~~avaV~P~~ 354 (1618)
+.+|+|||||||||+||+||||||++
T Consensus 16 ~~~l~i~TTrP~Tl~g~~aiav~P~~ 41 (147)
T 1wka_A 16 GGFIEIATVRPETVFADQAIAVHPED 41 (147)
T ss_dssp SCEEEEEESCGGGGGGCCEEEECTTC
T ss_pred CcEEEEEECCceecccceEEEECCCC
Confidence 46899999999999999999999996
|
| >3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-17 Score=181.47 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=29.2
Q ss_pred cEEEEeecCccccccCceEEeCCCCCceeec
Q psy5309 330 VFLVAATLRPETMYGQTNAWVRPDMAYIALS 360 (1618)
Q Consensus 330 ~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~ 360 (1618)
.+|+||||||||||||++|||||++.|+.+.
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~ 68 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVL 68 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHH
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEE
Confidence 6899999999999999999999999999874
|
| >2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-16 Score=174.38 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCcEEEEeecCccccccCceEEeCCCCCceeec
Q psy5309 328 KPVFLVAATLRPETMYGQTNAWVRPDMAYIALS 360 (1618)
Q Consensus 328 ~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~ 360 (1618)
.+.+|+||||||||||||+||||||++.|+.+.
T Consensus 22 ~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~ 54 (196)
T 2ajg_A 22 YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKA 54 (196)
T ss_dssp CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHH
T ss_pred CCcEEEEEECChhhhcCccEEEECCCCcEEEEE
Confidence 356999999999999999999999999998863
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-15 Score=188.13 Aligned_cols=146 Identities=19% Similarity=0.188 Sum_probs=114.4
Q ss_pred hCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcC
Q psy5309 1208 LGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVED 1287 (1618)
Q Consensus 1208 Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D 1287 (1618)
.|+|+..+|...++..+.+.. +.++++.+.+|||++++|+|||||+||+|+|.+++++||+|++|||+++. ++.+|
T Consensus 226 gG~Dl~fpH~~~~~aq~~a~~---g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~-~~~~~ 301 (461)
T 1li5_A 226 GGSDLMFPHHENEIAQSTCAH---DGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG-HYRSQ 301 (461)
T ss_dssp CBGGGTTTHHHHHHHHHHHHS---SSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSS-CTTSC
T ss_pred ccCccCchHHHHHHHHHHHhc---CCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcC-CcCCC
Confidence 489999899888887655543 33567778888999999999999999999999999999999999999985 88999
Q ss_pred cccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHH
Q psy5309 1288 ANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLS 1367 (1618)
Q Consensus 1288 ~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~ 1367 (1618)
++||++.+.+..+.++. +.+.+.+ .+. ..+ . |
T Consensus 302 ~~fs~~~l~~~~~~l~r--l~n~~~~--------------------------------~~~--~~~------~-d----- 333 (461)
T 1li5_A 302 LNYSEENLKQARAALER--LYTALRG--------------------------------TDK--TVA------P-A----- 333 (461)
T ss_dssp EEECHHHHHHHHHHHHH--HHHHHTT--------------------------------CCT--TSC------C-C-----
T ss_pred CCCCHHHHHHHHHHHHH--HHHHHHH--------------------------------hhc--CCC------H-H-----
Confidence 99999988886655541 1121111 010 011 1 2
Q ss_pred HHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5309 1368 EMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDKYREL 1406 (1618)
Q Consensus 1368 ~l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~~n~Y~~~ 1406 (1618)
++..+.+.+.++| |+|+++.|++.++ +++...|.|++.
T Consensus 334 ~l~~~~~~~~~am~dd~n~~~Al~~l~-~l~~~~N~~~~~ 372 (461)
T 1li5_A 334 GGEAFEARFIEAMDDDFNTPEAYSVLF-DMAREVNRLKAE 372 (461)
T ss_dssp SCHHHHHHHHHHHHBTSCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHH-HHHHHHHHHHhc
Confidence 3567888999999 9999999999985 999999999853
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-15 Score=187.31 Aligned_cols=139 Identities=19% Similarity=0.138 Sum_probs=97.8
Q ss_pred HhCCCccccccchhhhhhhcccCCCCCCcccceecc-ccccccccccccccCCcCCHHHHHHh-cCcceeeeehhccCCC
Q psy5309 1207 LLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN-GHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1207 ~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~h-Gfvld~G~KMSKSlGNvI~P~~ii~~-yGaD~lRl~l~~~~~~ 1284 (1618)
..|+|+..+|...++..+.+..+ ..+|..+.+| ||++++|+|||||+||+|+|.+++++ ||+|++|||+++ +++
T Consensus 249 ~~G~D~~~~H~~~~~a~~~a~~g---~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~-~~~ 324 (414)
T 3c8z_A 249 GGGSDLIFPHHEYSAAHAESVTG---ERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS-GHY 324 (414)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHHC---CSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHT-SCT
T ss_pred EeccccccHHHHHHHHHHHHhcC---CCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEe-cCc
Confidence 35899999999999877666542 3467888888 89999999999999999999999999 999999999999 689
Q ss_pred CcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHH
Q psy5309 1285 VEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKV 1364 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 1364 (1618)
.+|++||++.+.+..+.++.. +++ ++ . .++ +
T Consensus 325 ~~d~~fs~~~l~~~~~~l~~l--~n~----------------------------~~---~-~~~----~----------- 355 (414)
T 3c8z_A 325 REDRFWSNEVLDEANARLARW--RSA----------------------------TA---L-PEA----P----------- 355 (414)
T ss_dssp TSCBCCCHHHHHHHHHHHHHH--HHH----------------------------HT---S-SCB----S-----------
T ss_pred CCCCCcCHHHHHHHHHHHHHH--HHH----------------------------HH---h-ccc----h-----------
Confidence 999999999988866655421 111 10 0 000 0
Q ss_pred HHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHH
Q psy5309 1365 FLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDK 1402 (1618)
Q Consensus 1365 il~~l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~~n~ 1402 (1618)
.++++.+++.++| |+|+|++|+++++ +|++..|.
T Consensus 356 ---~~~~~~~~v~~a~~d~~~~~~Al~~i~-~~~~~~n~ 390 (414)
T 3c8z_A 356 ---DATDVIARVRQYLADDLDTPKALAALD-GWCTDALS 390 (414)
T ss_dssp ---CCHHHHHHHHHHHHBTCCHHHHHHHHH-HHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHh
Confidence 1256788999999 8999999999985 99987776
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-14 Score=173.62 Aligned_cols=150 Identities=19% Similarity=0.146 Sum_probs=98.9
Q ss_pred HhCCCccccccchhhhhhhcccCCCCCCcccceecc-ccccccccccccccCCcCCHHHHHHh-cCcceeeeehhccCCC
Q psy5309 1207 LLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN-GHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1207 ~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~h-Gfvld~G~KMSKSlGNvI~P~~ii~~-yGaD~lRl~l~~~~~~ 1284 (1618)
..|+|+..+|...++..+.+..+ .++..+.+| |||+.+|+|||||+||+|+|.+++++ ||+|++|||+++. ++
T Consensus 258 ~gG~DLifpHheneiAqs~a~~g----~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~-~y 332 (501)
T 3sp1_A 258 LGGVDHIGVHHINEIAIAECFLN----KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS-HY 332 (501)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHHT----SCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTS-CT
T ss_pred eeccccccchHHHHHHHHHHccC----CCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc-cC
Confidence 34889999999888877776654 256777777 99999999999999999999999999 9999999999998 88
Q ss_pred CcCcccCHHHHHHHHHH----hhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCc
Q psy5309 1285 VEDANFVESMADAAVKK----FSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSF 1360 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~----~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1618)
.+|++||++.+++..+. ++ ++++.+.++. .. ........ ... .
T Consensus 333 r~~l~fs~~~l~~a~~~~~~ll~--rl~~~~~~~~---------------------~~---~~~~~~~~-----~~~--~ 379 (501)
T 3sp1_A 333 RNQLKFSLDNLQASKIARENLIN--KLSYFYESLD---------------------PV---DLNTLNKD-----LKN--F 379 (501)
T ss_dssp TSCEECCHHHHHHHHHHHHHHHH--HHHHHHHTCC---------------------HH---HHHHHHSC-----TTS--C
T ss_pred CCCCccCHHHHHHHHHhhHHHHH--HHHHHHHHHH---------------------hh---hccccccc-----ccc--h
Confidence 99999999999987777 55 2223222211 00 00000000 000 0
Q ss_pred chHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHH
Q psy5309 1361 NDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAA 1399 (1618)
Q Consensus 1361 ~D~~il~~l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~ 1399 (1618)
+ ...+..+.+.+.++| |+++.+.|+..++ +++..
T Consensus 380 -~---~~~~~~~~~~f~~am~dDlnt~~al~~l~-~~~~~ 414 (501)
T 3sp1_A 380 -G---FSVEKEYYDSFVEKISFDLNVAQGLALLW-EIIKS 414 (501)
T ss_dssp -S---SHHHHHHHHHHHHHHHBTSCHHHHHHHHH-HHHHC
T ss_pred -h---hhhHHHHHHHHHHHHHhccCcHHHHHHHH-HHHHH
Confidence 1 123456778899999 5899999999985 77653
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-13 Score=161.73 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=106.6
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+..+....|+|+|.+||||+|++++.|+++||+||+||+|.++.|+|++|.+|+..|++ .|
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~-------~g------------ 85 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGE-------NK------------ 85 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHH-------TT------------
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHH-------cC------------
Confidence 34555567899999999999999999999999999999999999999999999987764 11
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCce
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTF 248 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~ 248 (1618)
. ++.++++++.+.+++++++||+..|+..+.
T Consensus 86 ----------------------------------------~---------~~~e~a~~~~~~f~~d~~~LgI~~d~~~pr 116 (462)
T 3tqo_A 86 ----------------------------------------E---------SPAALAERFIQILHEDEKALRVLSPDQEPR 116 (462)
T ss_dssp ----------------------------------------S---------CHHHHHHHHHHHHHHHHHHHTCCCCSBCCB
T ss_pred ----------------------------------------C---------CHHHHHHHHHHHHHHHHHHcCCCCCccccC
Confidence 1 135667888889999999999999977655
Q ss_pred eecCCChhhhHHHHHHHHHHHhcCccccC-ceeEEEecCC
Q psy5309 249 ITTDSNPFFDSFVRWQFMRLRDRHKIKYG-KRYTVFSPRD 287 (1618)
Q Consensus 249 ~T~d~~p~y~~~v~~~f~~L~~kG~iy~g-~~~v~w~p~~ 287 (1618)
.| .|...++++|.+|.++|++|++ ...|+||+.+
T Consensus 117 aT-----e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~ 151 (462)
T 3tqo_A 117 AT-----QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR 151 (462)
T ss_dssp GG-----GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT
T ss_pred hh-----hHHHHHHHHHHHHHHCCCEEEecCCcEEecccc
Confidence 43 3888999999999999999998 5778888764
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=161.67 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=109.3
Q ss_pred cccchhhhhhhcccCCCCCCccc-ceeccccc-cc-ccc--ccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcc
Q psy5309 1215 NHLTFFIYIHTAIWGDEPEMWPR-GIRANGHL-LL-NSA--KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDAN 1289 (1618)
Q Consensus 1215 vh~~~f~s~~~~~~p~~~~~~p~-~v~~hGfv-ld-~G~--KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~ 1289 (1618)
.|.+||+.+.... ...+..|++ .++.|||| ++ +|+ |||||+||+|+|.++++++|+|++|||+++. .+.+|++
T Consensus 245 dq~~~f~~l~~~l-~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~-~~~~d~~ 322 (464)
T 3fnr_A 245 DHHGYIPRMKAAM-EFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSK-KCDTHLE 322 (464)
T ss_dssp GGGGGHHHHHHHH-HTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSS-CTTSCEE
T ss_pred cHHHHHHHHHHHH-HHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc-CCCCCCc
Confidence 4667787643222 222334454 56789999 44 665 9999999999999999999999999999998 6689999
Q ss_pred cCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccC--CCCCCCcchHHHHH
Q psy5309 1290 FVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLR--TGSQDSFNDKVFLS 1367 (1618)
Q Consensus 1290 fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~il~ 1367 (1618)
||++.+... .| +|. + +....+ ..|+.++++ +........+ ....+...|++++.
T Consensus 323 Fd~~~~~~~-------------~n-~np---v-~YlqYa---~aRi~silr---k~~~~~~~~~~~~~~~L~~~e~~Ll~ 378 (464)
T 3fnr_A 323 FDISDLQKE-------------DS-SNP---V-YYINYA---HARIHQVFA---KAGKKIDDVMKADLQSLNQDGVNLLF 378 (464)
T ss_dssp EEGGGGGCC-------------ST-TSH---H-HHHHHH---HHHHHHHHH---HTTCCTTTSTTCCCTTCCHHHHHHHH
T ss_pred cCHHHHHHH-------------hC-CCH---H-HHHHHH---HHHHHHHHH---HhhccCCCccccChhhCChHHHHHHH
Confidence 999854331 00 111 0 011111 123333332 2211101111 12234455999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5309 1368 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA 1408 (1618)
Q Consensus 1368 ~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~ 1408 (1618)
++.++.+.+.+++++++++.+++.++ +++...|.|.+.|+
T Consensus 379 ~L~~~~~~v~~a~~~~ep~~i~~yL~-~La~~~n~fY~~~~ 418 (464)
T 3fnr_A 379 EALNLKAVLNDAFEARALQKIPDYLK-NLAANFHKFYNENK 418 (464)
T ss_dssp HHHTHHHHHHHHHHHTCTTHHHHHHH-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHhCc
Confidence 99999999999999999999999985 99987777777664
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.5e-11 Score=149.39 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=107.6
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
..++..|.+..|||||++||||+|+.+++|+++|+++..||+|.+..+++++|.|+..++...++ +|.+..+.
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~----~g~~~~~~--- 213 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFER----YGNEEALV--- 213 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHH----HCCHHHHH---
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHH----hCchhhcc---
Confidence 35679999999999999999999999999999999999999999999999999999888765332 22110000
Q ss_pred CCCCCCCCCCCchh--c---------------ccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhch
Q psy5309 166 TEPQTDKDDDDPVI--K---------------DKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFP 228 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~--~---------------~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~ 228 (1618)
..++. . .++.|.+..+.|+....+.+ . | +++..+.- ..+++...
T Consensus 214 ---------~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le-----~-g--d~e~~~~w--~~~~~~~~ 274 (607)
T 1f7u_A 214 ---------KDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME-----D-G--DEEALKIW--KRFREFSI 274 (607)
T ss_dssp ---------HCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHH-----H-T--CHHHHHHH--HHHHHHHH
T ss_pred ---------CCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhh-----C-C--CHHHHHHH--HHHHHHHH
Confidence 00000 0 00112334444444333321 1 2 22222221 34566777
Q ss_pred hHHHHHHHHcCCccc-ccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 229 PLAVQDLRSIGIHVD-WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 229 ~~~~~~l~~lGi~~D-w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
+.+++++.+||+.+| |.++- .++...+..++..|.++|++|+.
T Consensus 275 ~~~~~~~~~L~V~fD~~~~ES------~~~~~~~~~vi~~L~~kG~~ye~ 318 (607)
T 1f7u_A 275 EKYIDTYARLNIKYDVYSGES------QVSKESMLKAIDLFKEKGLTHED 318 (607)
T ss_dssp HHHHHHHHHTTCCCSEEEEGG------GCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCcceeecCcc------hhhhhHHHHHHHHHHhCCCEEEE
Confidence 899999999999998 43331 11225789999999999999973
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-10 Score=144.47 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=110.6
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+..|.+..|||||+|||||+|+.+++|+++|++++.||+|.+...+++.|.|+...+... ..+|.+..
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~----~~~g~d~~-------- 171 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFAL----RHYGLTWD-------- 171 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHH----HHTTCCCC--------
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHH----HHhCCccc--------
Confidence 679999999999999999999999999999999999999999999999999997664432 23453210
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhH----HHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc-
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAK----YQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD- 243 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~----~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D- 243 (1618)
+. ...+.|.|+...++++....+ ...++++.+.... ...+++.+.+.+++++++||+.+|
T Consensus 172 ---~~----~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~--------~~~~~~~~~~~~~~~~~~LgI~~D~ 236 (592)
T 1iq0_A 172 ---GK----EKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGE--------LREEVNRILLAQMATMHALNARYDL 236 (592)
T ss_dssp ---SS----SCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTT--------THHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred ---CC----CCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchH--------HHHHHHHHHHHHHHHHHHcCCEeEE
Confidence 00 011245566666665544322 1111222211111 146678889999999999999998
Q ss_pred ccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 244 WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 244 w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
|.+ +.+ ......+++++.+|.++|++|+
T Consensus 237 ~~~---es~--~~~~~~v~~~~~~L~~kG~~y~ 264 (592)
T 1iq0_A 237 LVW---ESD--IVRAGLLQKALALLEQSPHVFR 264 (592)
T ss_dssp EEE---HHH--HHHTTHHHHHHHHHTTSTTEEC
T ss_pred ecc---CCc--ccccchHHHHHHHHHHCCCccc
Confidence 422 222 2236689999999999999995
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=9.7e-10 Score=138.68 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=44.5
Q ss_pred EEEEccceeeC--CccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHH-HHHHHH
Q psy5309 1035 GIRANGHLLLN--SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVES-MADAGI 1096 (1618)
Q Consensus 1035 ~v~~hG~vl~~--G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~-~~~~~~ 1096 (1618)
.+++||+|+.+ |+|||||+||+|++.++++.||+|++|+|+++. .+.++.+|+.+ .+...+
T Consensus 264 ~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~-~~~~~~~fs~~~~l~~~~ 327 (523)
T 1irx_A 264 LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARH-RPNKEIKIDLGLGILNLY 327 (523)
T ss_dssp BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSS-CTTSCEEECCSTTHHHHH
T ss_pred eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCCCceeCcchhHHHHH
Confidence 57888999966 999999999999999999999999999999976 67899999987 554433
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-09 Score=137.18 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=87.6
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCC--hhh---HHHHHHHHHHHHhcCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTG--MPI---KACADKLKREMESFGFPPQFPSE 164 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G--~pI---e~~a~k~~~~~~~~gi~~~~~e~ 164 (1618)
.++....|+|||+|||||+|++++.|+++||++++|++|.|.+++|++| ..| ...+. + +..|.+..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~--~---~~~G~~~~---- 91 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEW--K---DYLGMPIS---- 91 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGG--G---GGTTSBGG----
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHH--H---HHcCCCcc----
Confidence 3344345899999999999999999999999999999999999999999 333 11110 0 01132210
Q ss_pred CCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccc
Q psy5309 165 DTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDW 244 (1618)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw 244 (1618)
.+++ .|..+.++++++.+.++++|+.||+.+|+
T Consensus 92 -------------------------------------------~~p~----p~~~~~~~~~~~~~~~~~~l~~Lgi~~D~ 124 (523)
T 1irx_A 92 -------------------------------------------EVPD----PWGCHESYAEHFMRKFEEEVEKLGIEVDL 124 (523)
T ss_dssp -------------------------------------------GSCC----TTSSSSSHHHHHHHHHHHHHHTTTCCCEE
T ss_pred -------------------------------------------cCCc----chhhHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 0000 01113577888899999999999998773
Q ss_pred cCceeecCCChhhhH-HHHHHHHHHHhcC-ccccC
Q psy5309 245 RRTFITTDSNPFFDS-FVRWQFMRLRDRH-KIKYG 277 (1618)
Q Consensus 245 ~~~~~T~d~~p~y~~-~v~~~f~~L~~kG-~iy~g 277 (1618)
|.+++ .|.+ .+.+++.+|.++| .||.-
T Consensus 125 ---~~~se---~~~~g~~~~~i~~L~~~G~~iy~~ 153 (523)
T 1irx_A 125 ---LYASE---LYKRGEYSEEIRLAFEKRDKIMEI 153 (523)
T ss_dssp ---EEHHH---HHHTTTTHHHHHHHHHTHHHHHHH
T ss_pred ---Eechh---hccchHHHHHHHHHHHchHHHHHH
Confidence 32222 1544 6788889999999 88753
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-08 Score=129.79 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=111.9
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
..++..|.+..|||||+|||||+|+.+++|+++|++++.||+|.+..+++++|.|+...+.... .+|.+..++..
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~----~~g~~~~~~~~- 191 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYL----RLKEEFERIMN- 191 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHH----HCHHHHHHHHH-
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHH----HhCCcchhhhh-
Confidence 3567999999999999999999999999999999999999999999999999999987764321 12211000000
Q ss_pred CCCCCCCCCCCchhcccccCcchHHHHHhhhhHH-----HHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCC
Q psy5309 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKY-----QWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGI 240 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~-----~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi 240 (1618)
+........++. +.|.|.+..+.++...... ..+.+..+...+ .-...+++.+.+.+++++++||+
T Consensus 192 -~~~~~~~~~~~~--d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd------~~~~~~~~~~~~~f~~~~~~L~I 262 (629)
T 2zue_A 192 -ELRERGLKDNPI--DHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGE------LYGRKLAEEVVRAQMVTTYKLGV 262 (629)
T ss_dssp -HHHHHTSCSCCH--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSS------SCCHHHHHHHHHHHHHHHHHHTC
T ss_pred -hhcccccccCcc--hhhHHHHHHHHHHHHhcCchHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 000000000111 2456666666555433321 111111111000 11256788889999999999999
Q ss_pred ccc-ccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 241 HVD-WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 241 ~~D-w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+| |.++ .+ ......+..++.+|.++|++|+
T Consensus 263 ~~D~~~~e---s~--~~~~~~v~~vi~~L~~kG~~y~ 294 (629)
T 2zue_A 263 KYDLLVWE---SD--IVRRKLFEIALELLSKNENFYI 294 (629)
T ss_dssp CCSEEEEH---HH--HHHTTHHHHHHHHHHTSTTEEC
T ss_pred ccccccCc---Cc--cccchhHHHHHHHHHHCCCccc
Confidence 998 3332 22 2226689999999999999994
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=91.04 Aligned_cols=41 Identities=24% Similarity=0.129 Sum_probs=35.4
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccc
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~ 130 (1618)
..++++.-+|+|||+|||||+|++++.|.+||. ..|.-+++
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLR 51 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILR 51 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEEC
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEE
Confidence 457788888999999999999999999999998 67887765
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=97.37 E-value=3.1e-05 Score=95.95 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=72.5
Q ss_pred ccCCCccchhhhHHHHhhhhhhhhhhcccccccc---cchhhhhhhhh--ccCCCCCCcCcEEEEccceeeCCccceecc
Q psy5309 979 IRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN---HLTFFIYIHTA--IWGDEPEMWPRGIRANGHLLLNSAKMSKSE 1053 (1618)
Q Consensus 979 lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~---h~~~~i~~~~~--~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~ 1053 (1618)
.+|++|++| ..+.+..+.+++++ |++|...+..+ .++ .+.|+. .++|++..+|+|||||+
T Consensus 270 g~PtYhfa~-----------~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG---~~~P~y-~H~~~L~~~g~KLSKR~ 334 (553)
T 3aii_A 270 VYPMMNFSV-----------AVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG---WEPPEF-IHYGRLKMDDVALSTSG 334 (553)
T ss_dssp EEECHHHHH-----------HHHHHHTTCCEEEC-----CHHHHHHHHHHHHT---CCCCEE-ECCCCBC-------CHH
T ss_pred eeeeeeeee-----------eeeeccCCCceEeccHhhhhCHHHHHHHHHHcC---CCCCeE-EEeeEEecCCceechhh
Confidence 478888877 35677788899999 99998887622 122 234665 48999989999999999
Q ss_pred Cc---------------ccChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHh
Q psy5309 1054 GN---------------FLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGIL 1097 (1618)
Q Consensus 1054 GN---------------vV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~ 1097 (1618)
|| +.+...+.++ |.++++|.|+++.+-..++..|+++.+....+
T Consensus 335 ~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r 394 (553)
T 3aii_A 335 AREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNR 394 (553)
T ss_dssp HHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHH
T ss_pred hhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHH
Confidence 98 6778888887 99999999999886657899999877655443
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00028 Score=89.88 Aligned_cols=138 Identities=8% Similarity=0.061 Sum_probs=101.8
Q ss_pred CcCcEEEEccceeeCCccceeccCcccChHHHHhhcCc----------------------------cceEEeecccCccc
Q psy5309 1031 MWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSA----------------------------DGMRLCLADSGDSV 1082 (1618)
Q Consensus 1031 ~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGa----------------------------DalRl~l~~~~~~~ 1082 (1618)
++++.+.+.+|.+++ |||||+||+|++.|+++.++. .++||++++. .+.
T Consensus 392 ~~~~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~-~~~ 468 (607)
T 1f7u_A 392 EWAKDLQHVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQG-KRI 468 (607)
T ss_dssp GGGGGEEEECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS-CTT
T ss_pred CcCcEEEEecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhcc-CCC
Confidence 356667777886655 699999999999999998744 3799999976 889
Q ss_pred ccccccHHHHHHHH----hhHHHHHHHHHHHHHhcccCC----CCCC---C-CcchHHHHHHHHHHHHHHHHHHhhccHH
Q psy5309 1083 EDANFVESMADAGI----LRLYTFIEWVKEILATQSTLR----TGSQ---D-SFNDKVFLSEMNLKIKETEDHYTKMLFK 1150 (1618)
Q Consensus 1083 ~D~~fs~~~~~~~~----~kl~N~~~~l~~~l~~~~~~~----~~~~---~-~~~D~~~l~~l~~~i~~v~~~~e~~~f~ 1150 (1618)
++..|+++.+.+.- .-+.....|+.+++.+..... .... + ...++.++..+..+.+.+.+++++++.+
T Consensus 469 s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~ 548 (607)
T 1f7u_A 469 NNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPT 548 (607)
T ss_dssp CCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHH
T ss_pred CCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999998865321 244555566667666541111 0011 1 3445678888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy5309 1151 EALRTGFFELQAARDKYRELTA 1172 (1618)
Q Consensus 1151 ~al~~~~~~l~~~~n~Yi~~~k 1172 (1618)
..+.. ++++....|.|-+.++
T Consensus 549 ~l~~Y-l~~La~~fn~fY~~~~ 569 (607)
T 1f7u_A 549 TVVTY-LFKLTHQVSSCYDVLW 569 (607)
T ss_dssp HHHHH-HHHHHHHHHHHHHHCC
T ss_pred HHHHH-HHHHHHHHHHHHHhCC
Confidence 99998 6899988888777664
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00024 Score=82.53 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=32.3
Q ss_pred hchhHHHHHHHHcCCcccccC-ceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 226 HFPPLAVQDLRSIGIHVDWRR-TFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 226 ~~~~~~~~~l~~lGi~~Dw~~-~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.+.|.++|+.+|+..| . .+...+ +......++.+|.++|++|.
T Consensus 55 ~~~~~I~~dL~~LGl~~D--~~~~~qSe----r~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 55 GAAETILRQLEHYGLHWD--GDVLWQSQ----RHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp THHHHHHHHHHHTTCCCS--SCCEEGGG----CHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCC--CCCeeeeC----CHHHHHHHHHHHHHcCCccc
Confidence 345678899999996554 3 333222 55677888999999999995
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00077 Score=85.25 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=32.8
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
+++.+-|+ |+|||+|||||++++++.+.+||. ..|.-++
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~il 166 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFIL 166 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEE
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEE
Confidence 56888999 999999999999999999999985 3454443
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00044 Score=85.70 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=33.0
Q ss_pred hchhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 226 HFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 226 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.+.|.++|+.||+. |+..+...+ |-........+|.++|++|.
T Consensus 146 e~~~~I~edL~wLGl~--wd~~~~qSd----r~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 146 EAYDMIPADLEWLGVE--WDETVIQSD----RMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp THHHHHHHHHHHHTCC--CSEEEEGGG----GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCC--CCCCccccc----CHHHHHHHHHHHHHcCCcee
Confidence 3456778999999964 544444333 66678888899999999995
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0011 Score=82.14 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=24.3
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHH
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVR 119 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR 119 (1618)
++..=|| |.|||.||||||+++++...+||
T Consensus 26 ~v~tRFa-PSPtG~LHIGhaRtal~n~l~Ar 55 (553)
T 1qtq_A 26 TVHTRFP-PEPNGYLHIGHAKSICLNFGIAQ 55 (553)
T ss_dssp SCEEEEC-CCTTSCCBHHHHHHHHHHHHHHH
T ss_pred ceEEEeC-CCCCCCccHHHHHHHHHHHHHHH
Confidence 4444454 89999999999999999777776
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0017 Score=84.03 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=32.2
Q ss_pred hchhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 226 HFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 226 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.+.|.++|+.||+..| ...+...+ |-........+|.++|+.|.
T Consensus 116 e~~~~IledL~wLGl~wd-e~~~~qSe----r~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 116 EYVDSIADDLKWLGLDWG-EHFYYASD----YFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHHHHHHHHHHHHTCCCT-TCEEEGGG----GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCC-CCcccHhh----hHHHHHHHHHHHHHCCCcEe
Confidence 345677899999995443 23343332 66677788899999999995
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00053 Score=85.02 Aligned_cols=99 Identities=14% Similarity=-0.017 Sum_probs=73.1
Q ss_pred ccCCCccchhhhHHHHhhhhhhhhhhccccccc---ccchhhhhhhhhccCCCCCC-cCcEEEEccceeeCCccceeccC
Q psy5309 979 IRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQ---NHLTFFIYIHTAIWGDEPEM-WPRGIRANGHLLLNSAKMSKSEG 1054 (1618)
Q Consensus 979 lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~---~h~~~~i~~~~~~~p~~~~~-~pk~v~~hG~vl~~G~KMSKS~G 1054 (1618)
.+|.+|+.| ..+.|..+.++++ +|++|..++..++- +...+ .|+.+ .+|++..+|.|||||+|
T Consensus 207 g~PtY~la~-----------vvDDh~~GITHviRg~e~~~n~~~q~~l~~-alg~~~~P~~~-~f~hLn~~g~KLSKR~~ 273 (553)
T 1qtq_A 207 IYPMYDFTH-----------CISDALEGITHSLCTLEFQDNRRLYDWVLD-NITIPVHPRQY-EFSRLNLEYTVMSKRKL 273 (553)
T ss_dssp EEECHHHHH-----------HHHHHHTTCSEEEEEGGGTTTHHHHHHHHH-TSCCSCCCEEE-EECCCCBTTSCCCHHHH
T ss_pred ccccccccc-----------EEEeccCCcceEeeccchhhhHHHHHHHHH-HcCCCCCCCeE-EEEeecCCCcccccccc
Confidence 377888655 3677888999999 99999988863221 11222 24444 89999999999999999
Q ss_pred c---------------ccChHHHHhh-cCccceEEeecccCcccccccccHH
Q psy5309 1055 N---------------FLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVES 1090 (1618)
Q Consensus 1055 N---------------vV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~ 1090 (1618)
| +++..++.++ |.++++|.|++..+-...+..+...
T Consensus 274 ~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~ 325 (553)
T 1qtq_A 274 NLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMA 325 (553)
T ss_dssp HHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHH
T ss_pred ccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchh
Confidence 7 6788899977 9999999999877654445444433
|
| >1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00091 Score=69.52 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=56.7
Q ss_pred cccCCccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcCCC----cEEEeccccccc-cc----cCCCchhhhHHHHh
Q psy5309 360 SCLDSKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERSARN-MA----YQGFTEVEGKINVL 429 (1618)
Q Consensus 360 ~~~~~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~~~~-~~----~~g~~~~~a~~~ii 429 (1618)
+|+.+++++|+++ .+.++ +|||+|++.|+|+..||+.+.. -+.+++.++..+ .. |.|+.+++|+..|+
T Consensus 54 ~P~~~~~ipI~~~~~V~~~--~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~~~Gl~~~~A~~~Ii 131 (147)
T 1wka_A 54 IPLTEVWIPILADPAVEKD--FGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAV 131 (147)
T ss_dssp CTTSSCEEEEEECTTCCTT--STTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTTSBBCSTTSCGGGTTSBHHHHHHHHH
T ss_pred CCCCCCeeEEEEeCccccC--CCCCcEEEccCCCHHHHHHHHHcCCCcceEECCCCEEcCCCcccccCCcCHHHHHHHHH
Confidence 4667888888775 57776 9999999999999888876431 122222222212 23 99999999999999
Q ss_pred hhhccCcce
Q psy5309 430 LRLTGQVCI 438 (1618)
Q Consensus 430 ~~l~~~~l~ 438 (1618)
+.|+..++.
T Consensus 132 ~~L~~~g~l 140 (147)
T 1wka_A 132 ELFREAGHL 140 (147)
T ss_dssp HHHHHHTCE
T ss_pred HHHHHCCCe
Confidence 999888766
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=78.58 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=37.4
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++++++ .+|+|||||.||+ ...++.++ |.++++|.|++..+
T Consensus 233 ~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG 278 (492)
T 2cfo_A 233 NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG 278 (492)
T ss_dssp EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT
T ss_pred eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 566778876 8999999999997 78888875 89999999998764
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0041 Score=76.46 Aligned_cols=39 Identities=33% Similarity=0.278 Sum_probs=29.8
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
.++.+=|+ |.|||.|||||++++++...++|. ..|.-++
T Consensus 24 ~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar~--~~G~fil 62 (490)
T 4g6z_A 24 RPVRTRFA-PSPTGFIHLGNIRSALYPWAFARK--MKGTFVL 62 (490)
T ss_dssp CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred CCceEEeC-CCCCCCccHHHHHHHHHHHHHHHh--cCCeEEE
Confidence 44556665 899999999999999998888874 3454443
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0078 Score=75.25 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=28.0
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
.-+=| +|-|||.||||||+++.+.-.+||- ..|.-++
T Consensus 25 vrtRF-APsPtG~LHiG~artAl~n~~~Ar~--~~G~fiL 61 (512)
T 4gri_A 25 TRVRY-APSPTGLQHIGGIRTALFNYFFAKS--CGGKFLL 61 (512)
T ss_dssp CEEEE-CCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred eeEEe-CcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEE
Confidence 33444 4899999999999999999988764 4565443
|
| >3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0032 Score=69.75 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=56.3
Q ss_pred cccCCccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcCCC----cEEEecc-------------ccc--cccccCCC
Q psy5309 360 SCLDSKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTE-------------RSA--RNMAYQGF 419 (1618)
Q Consensus 360 ~~~~~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~-------------~~~--~~~~~~g~ 419 (1618)
+|+.++.++|+++ .+.++ +|||+|++.|+|+..||+.+.. -+.++.. ++. ....|.|+
T Consensus 115 ~Pl~~~~iPI~~adyV~~~--~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl 192 (219)
T 3o0a_A 115 NPANGEKIPVWSANYVLYE--YGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGL 192 (219)
T ss_dssp CTTTCCEEEEEEETTSCTT--STTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTC
T ss_pred CCCCCCeeeEEEecccccC--CCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCCCCCCC
Confidence 4667888888654 57777 9999999999999988876531 1111211 110 01469999
Q ss_pred chhhhHHHHhhhhccCcce
Q psy5309 420 TEVEGKINVLLRLTGQVCI 438 (1618)
Q Consensus 420 ~~~~a~~~ii~~l~~~~l~ 438 (1618)
.+++|+..|++.|+..++.
T Consensus 193 ~~~eA~~~Ii~~L~~~g~l 211 (219)
T 3o0a_A 193 DSETAKRKITEWLQDRGLG 211 (219)
T ss_dssp BHHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHHHCCCe
Confidence 9999999999999998876
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0067 Score=75.01 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=35.4
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++.+++ .+|+||||+.|+ +...++.+. |-++++|-|++..+
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG 286 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 286 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTT
T ss_pred eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 455667776 789999999999 578888774 88999998888654
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.011 Score=72.76 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=35.1
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++++++ .+|+||||++||+ ...++.++ |-++++|-|++..+
T Consensus 229 ~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 274 (468)
T 1j09_A 229 RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMG 274 (468)
T ss_dssp EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHS
T ss_pred eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhc
Confidence 345667766 8899999999999 77777764 88999998887654
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0047 Score=79.97 Aligned_cols=99 Identities=12% Similarity=-0.106 Sum_probs=69.7
Q ss_pred ccCCCccchhhhHHHHhhhhhhhhhhcccccccc---cchhhhhhhhhccCCCCCCc-CcEEEEccceeeCCccceeccC
Q psy5309 979 IRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN---HLTFFIYIHTAIWGDEPEMW-PRGIRANGHLLLNSAKMSKSEG 1054 (1618)
Q Consensus 979 lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~---h~~~~i~~~~~~~p~~~~~~-pk~v~~hG~vl~~G~KMSKS~G 1054 (1618)
.+|.+|++| ..+.|..+.++++. |++|...+.-++ -+...+. |+ ...+|++..+|.|||||+|
T Consensus 247 g~PtYhfA~-----------vVDD~~~GITHViRG~D~~~n~~~q~~l~-~alG~~~~P~-~~~fahLn~~g~KLSKR~g 313 (851)
T 2hz7_A 247 IYPAYDFEH-----------PLQDAIEGVTHSMCSLEFVDNRAIYDWLM-EKLNFDPRPH-QYEFGRRGLEYTITSKRKL 313 (851)
T ss_dssp EEECHHHHH-----------HHHHHHHTCSEEEEEGGGTTTHHHHHHHH-HHTTCSSCCE-EEEECCEEETTCCCCHHHH
T ss_pred cccccceee-----------EeeeccCCcceeecchhhhhChHHHHHHH-HHcCCCCCCC-ceEEEEecCCCcccccccc
Confidence 478899877 24666677888888 788877765221 0011222 43 3488999999999999998
Q ss_pred c---------------ccChHHHHhh-cCccceEEeecccCcccccccccHH
Q psy5309 1055 N---------------FLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVES 1090 (1618)
Q Consensus 1055 N---------------vV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~ 1090 (1618)
| +++..++.++ |.++++|.|++..+-...|..+...
T Consensus 314 ~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~ 365 (851)
T 2hz7_A 314 RELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIA 365 (851)
T ss_dssp HHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHH
T ss_pred ccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHH
Confidence 7 5678888876 9999999999877654445444433
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0036 Score=77.48 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=30.7
Q ss_pred hhHHHHHHHHcCCcccccC-ceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 228 PPLAVQDLRSIGIHVDWRR-TFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 228 ~~~~~~~l~~lGi~~Dw~~-~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.|.++|+.+|+ +|+. .|...+ +...-.....+|.++|++|.
T Consensus 53 ~~~i~~dL~wLGl--~wde~~~~QS~----r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 53 TENILEGLQWLGL--TWDEGPYFQSD----RLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHTTC--CCSEEEEEGGG----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCC--CCCCCCccccC----CHHHHHHHHHHHHHCCCceE
Confidence 4577889999995 5654 344332 44566778889999999985
|
| >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0039 Score=67.47 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=53.2
Q ss_pred CccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcCCC----cEEEecccccc--ccccCCCchhhhHHHHhhhhccCc
Q psy5309 364 SKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERSAR--NMAYQGFTEVEGKINVLLRLTGQV 436 (1618)
Q Consensus 364 ~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~~~--~~~~~g~~~~~a~~~ii~~l~~~~ 436 (1618)
++.++|+.+ .+.++ +|||+|++.|+|+..||+.+.. -+.+++.++.. .. |.|+.+++|+..|++.|+..+
T Consensus 99 ~~~ipi~~~~~V~~~--~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~~-~~Gl~v~~A~~~Ii~~L~~~g 175 (186)
T 1wny_A 99 EKGYFVVLADYVSQE--DGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP-FKGLYFREANRAILRDLRGRG 175 (186)
T ss_dssp SSCCBEEECTTCCSS--SSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCSTT-CTTCBHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCcCcCC--CCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccCC-CCCcCHHHHHHHHHHHHHHCC
Confidence 677777665 57777 9999999999999888876531 12222222211 13 999999999999999999888
Q ss_pred ce
Q psy5309 437 CI 438 (1618)
Q Consensus 437 l~ 438 (1618)
+.
T Consensus 176 ~l 177 (186)
T 1wny_A 176 LL 177 (186)
T ss_dssp CE
T ss_pred Ce
Confidence 76
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.026 Score=69.77 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=35.4
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++.+++ .+|+||||++|++ +..++.+. |.++++|.|++..+
T Consensus 243 ~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~lG 288 (498)
T 2ja2_A 243 KFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLG 288 (498)
T ss_dssp EEEEECCEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred eEEEeeeeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHHhC
Confidence 445567766 8899999999994 78888775 88999999988665
|
| >2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.013 Score=64.02 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=54.9
Q ss_pred cccCCccEEEEe-cccccCccCCCeeEEecCCCCeeEEEcCCC----cEEEec---------------cccc-c-ccccC
Q psy5309 360 SCLDSKPVFLVA-ATLRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCT---------------ERSA-R-NMAYQ 417 (1618)
Q Consensus 360 ~~~~~~~~~iv~-~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~---------------~~~~-~-~~~~~ 417 (1618)
+|+.+++++|+. +.+.++ +|||+|++.|+|+..||+.+.. -+.++. +++. . ...|.
T Consensus 94 ~P~~~~~ipV~~ad~V~~~--~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~ 171 (196)
T 2ajg_A 94 HPLTGEEIPVWAANFVLME--YGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFN 171 (196)
T ss_dssp CTTTCCEEEEEEETTCCSS--SSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGT
T ss_pred CCCCCCeeEEEEeCCCccC--CCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecCcccC
Confidence 355677788765 457777 9999999999999888876421 112221 0110 0 13599
Q ss_pred CCchhhhHHHHhhhhccCcce
Q psy5309 418 GFTEVEGKINVLLRLTGQVCI 438 (1618)
Q Consensus 418 g~~~~~a~~~ii~~l~~~~l~ 438 (1618)
|+.+++|+..|++.|+..++.
T Consensus 172 Gl~v~eA~~~Ii~~L~~~g~~ 192 (196)
T 2ajg_A 172 GLDHEAAFNAIADKLTAMGVG 192 (196)
T ss_dssp TCCHHHHHHHHHHHHHHTTSE
T ss_pred CeEHHHHHHHHHHHHHHCCCc
Confidence 999999999999999988876
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.097 Score=61.59 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=30.7
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeeccc
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADS 1078 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~ 1078 (1618)
..+++.++. .+|+|||||.||.|++.+ .+|.+|-.++++
T Consensus 200 ~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 200 VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 356677877 899999999999999886 367777776654
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.1 Score=58.96 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=28.9
Q ss_pred cccCC-ccEEEEec-ccccCccCCCeeEEecCCCCeeEEE
Q psy5309 360 SCLDS-KPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFT 397 (1618)
Q Consensus 360 ~~~~~-~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~ 397 (1618)
+|+.+ +.++|+.+ .+.++ +|||+|+..|+|+..||.
T Consensus 107 ~Pl~~~~~ipV~~adyV~~~--~GTG~V~~vPaHd~~D~~ 144 (252)
T 2wfd_A 107 APLTSYKVIYVLPMLTIKED--KGTGVVTSVPSDSPDDIA 144 (252)
T ss_dssp CSSCSSSCEEEEECSCCCSS--SSCSSEEECTTTCHHHHH
T ss_pred cCCCCCceeEEEEeCcccCC--CCCCeEEEcCCCCHHHHH
Confidence 46666 46777664 58877 999999999999988887
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.059 Score=61.25 Aligned_cols=130 Identities=28% Similarity=0.312 Sum_probs=93.7
Q ss_pred eEEEEEEeeccCCcccccc--------CCCCCcEEEEeecCccccccCceEEeCCCCCce--------------------
Q psy5309 306 EYTLIKMRLVKPYPAKLCC--------LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI-------------------- 357 (1618)
Q Consensus 306 ~y~~~~~~~~~~~~~~~~~--------~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~-------------------- 357 (1618)
+|+.+|+++.+ .+..+.. +++.+.+|+||||||||||||+||||||+..|+
T Consensus 2 ~y~~ik~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~ 80 (261)
T 2wfg_A 2 GYVGIKIRLTD-VAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNM 80 (261)
T ss_dssp CEEEEEEEEEE-CCHHHHHHHHHTTCCTTTSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHH
T ss_pred ceeEEEEEEec-CcHHHHHHhcccccccCCCCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHH
Confidence 58999999875 4432221 334467999999999999999999999995441
Q ss_pred ---------------------------eecccC-CccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcCCC-------
Q psy5309 358 ---------------------------ALSCLD-SKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTATG------- 401 (1618)
Q Consensus 358 ---------------------------~~~~~~-~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~------- 401 (1618)
..+|+. ++.++|+.+ .+.++ +|||+|+..|+|+..||..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~ipV~~adyV~~~--~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ 158 (261)
T 2wfg_A 81 SFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLAT--KGTGVVTCVPSDSPDDFVTTRDLANKPEY 158 (261)
T ss_dssp TTTTCSSSTTCCCCSEEEEHHHHTTCEEECTTCSSCSEEEEECTTCCTT--STTSCEEECTTTCHHHHHHHHHHHHSTTT
T ss_pred HHHhhhhcccccEEEEEEecccccCCEEECCCCCCceeEEEeeccccCC--CCCCeeEEcCCCCHHHHHHHHHhhcchhh
Confidence 114776 467887664 58777 9999999999998887765321
Q ss_pred ----------c-EEEeccc--c-------------------------------------c-cccccCCCchhhhHHHHhh
Q psy5309 402 ----------E-VFVCTER--S-------------------------------------A-RNMAYQGFTEVEGKINVLL 430 (1618)
Q Consensus 402 ----------~-~~i~~~~--~-------------------------------------~-~~~~~~g~~~~~a~~~ii~ 430 (1618)
. +.++... + . ....|.|+.+++|+..|++
T Consensus 159 ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~ 238 (261)
T 2wfg_A 159 YGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQ 238 (261)
T ss_dssp TTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHH
T ss_pred cCCccccccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHH
Confidence 1 1122210 0 0 0245999999999999999
Q ss_pred hhccCcce
Q psy5309 431 RLTGQVCI 438 (1618)
Q Consensus 431 ~l~~~~l~ 438 (1618)
.|+..++.
T Consensus 239 ~L~~~G~~ 246 (261)
T 2wfg_A 239 DLIDEGLA 246 (261)
T ss_dssp HHHHTTSE
T ss_pred HHHHCCCe
Confidence 99988876
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.44 E-value=0.089 Score=61.89 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=30.8
Q ss_pred eeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhcc
Q psy5309 1239 IRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADS 1281 (1618)
Q Consensus 1239 v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~ 1281 (1618)
.+++.++.. +|+|||||.||.|++.+ .+|.+|-.+.+.
T Consensus 201 ~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 201 CLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp EEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred EEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 556777777 89999999999999876 477888777664
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=83.93 E-value=0.58 Score=56.89 Aligned_cols=29 Identities=41% Similarity=0.455 Sum_probs=22.7
Q ss_pred CcEEEEcccee-eCCc-cceeccCcccChHH
Q psy5309 1033 PRGIRANGHLL-LNSA-KMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~-KMSKS~GNvV~p~e 1061 (1618)
|...+++..+. .+|. |||||.||.|+..+
T Consensus 215 ~~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 215 PQVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp CCEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 34566677777 7895 99999999988765
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=0.52 Score=55.19 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=20.0
Q ss_pred cccee--ccccccc-cccccccccCCcCCH
Q psy5309 1236 PRGIR--ANGHLLL-NSAKMSKSEGNFLTL 1262 (1618)
Q Consensus 1236 p~~v~--~hGfvld-~G~KMSKSlGNvI~P 1262 (1618)
|+.++ ++.++.. +|+|||||.||.|+.
T Consensus 174 P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L 203 (322)
T 3tzl_A 174 PEARVNEEVAVVVGTDGAKMSKSYQNTIDI 203 (322)
T ss_dssp CEEECCCSSCCCBCTTSSBCCGGGTCCCBS
T ss_pred chhhhccccccccCCCCCcCCCCCCCceec
Confidence 44444 4566666 899999999999843
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.31 E-value=0.59 Score=56.75 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=19.9
Q ss_pred EEEEcccee-eCCccceeccCc-ccChHH
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGN-FLTLTE 1061 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GN-vV~p~e 1061 (1618)
..+.+.++. .+|+|||||.|| .|+..+
T Consensus 217 ~~l~~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 217 HALTVPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp EEEECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred cccccccccCCCcCcCCCCCCCCeEEccC
Confidence 344455666 799999999999 776544
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=82.20 E-value=0.68 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=12.4
Q ss_pred EEEcccee-eCCccceeccCc-ccChH
Q psy5309 1036 IRANGHLL-LNSAKMSKSEGN-FLTLT 1060 (1618)
Q Consensus 1036 v~~hG~vl-~~G~KMSKS~GN-vV~p~ 1060 (1618)
.+.+.++. .+|+|||||.|| .|+..
T Consensus 209 ~l~~pll~gldG~KMSKS~~ns~I~L~ 235 (372)
T 1n3l_A 209 HLMNPMVPGLTGSKMSSSEEESKIDLL 235 (372)
T ss_dssp EEEECCCCCSSCC-------CCSCBTT
T ss_pred EEecCccCCCCcccccCCCCCCeEecc
Confidence 44566776 899999999999 67644
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=80.74 E-value=0.8 Score=56.59 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=42.1
Q ss_pred eeccccccc-cccccccccCCcCCHHHHHH-hcCcceeeeehhccCCC--CcCcccCHHHHHHHHHHhh
Q psy5309 1239 IRANGHLLL-NSAKMSKSEGNFLTLTEAVK-KFSADGMRLCLADSGDS--VEDANFVESMADAAVKKFS 1303 (1618)
Q Consensus 1239 v~~hGfvld-~G~KMSKSlGNvI~P~~ii~-~yGaD~lRl~l~~~~~~--~~D~~fs~~~l~~~~~~~n 1303 (1618)
...++++++ +|+||||+.||+ ...++.+ .|-++++|-|++..+-. ..+..++.+ ++++.+.
T Consensus 249 ~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~~~---e~i~~f~ 313 (481)
T 2o5r_A 249 FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLGWSHPEGKELLTLE---ELISSFS 313 (481)
T ss_dssp EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCCHH---HHHHHCC
T ss_pred EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCCHH---HHHHhCC
Confidence 444577777 899999999999 7888887 48889999998776432 122345554 3444444
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=80.52 E-value=0.4 Score=56.14 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=22.1
Q ss_pred cCcEEE--Ecccee-eCCccceeccCcccChH
Q psy5309 1032 WPRGIR--ANGHLL-LNSAKMSKSEGNFLTLT 1060 (1618)
Q Consensus 1032 ~pk~v~--~hG~vl-~~G~KMSKS~GNvV~p~ 1060 (1618)
.|+.++ .+..+. .+|+|||||.+|.|+..
T Consensus 173 ~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~ 204 (322)
T 3tzl_A 173 LPEARVNEEVAVVVGTDGAKMSKSYQNTIDIF 204 (322)
T ss_dssp CCEEECCCSSCCCBCTTSSBCCGGGTCCCBSS
T ss_pred CchhhhccccccccCCCCCcCCCCCCCceecC
Confidence 466666 355666 79999999999998543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1618 | ||||
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 2e-14 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 3e-06 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 1e-13 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 8e-06 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 3e-05 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 2e-13 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 2e-13 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 1e-10 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 1e-12 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 3e-08 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 1e-06 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 5e-12 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 3e-09 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 3e-09 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 8e-12 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 2e-08 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 1e-07 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 4e-11 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 3e-10 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 9e-07 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 8e-08 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 1e-07 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 5e-06 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 8e-06 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 0.003 | |
| d1h3na1 | 128 | a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS | 5e-04 |
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 75.4 bits (184), Expect = 2e-14
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 83 RSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIK 142
K + FPY +G LH+GH + + + RF R++G VL P G+ G+P +
Sbjct: 28 LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAE 87
Query: 143 ACADKLKREMESF 155
A K + +
Sbjct: 88 NAALKFGVHPKDW 100
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 49.2 bits (116), Expect = 3e-06
Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Query: 906 PEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHT 965
+ D F + + +L + W PVD G + HL + +
Sbjct: 303 TDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTK 362
Query: 966 AIW---GDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHT 1022
+ + E +G+ G +L A + + L +
Sbjct: 363 FLHDLGMVKVEEPFQGLFTQGMVL---AWTDFGPVEVEGSVVRLPEPTRIRLEIPESALS 419
Query: 1023 AIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
+ R L A MSKS+GN + + VK+ AD R+
Sbjct: 420 LEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARI 470
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 72.7 bits (177), Expect = 1e-13
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 48/134 (35%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFRE 71
K+E+EV W REKI++++V +
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVEN------------------------------------ 33
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
++ P NG H+GH + S + R+ ++G
Sbjct: 34 ------------RKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRR 81
Query: 132 FGFHCTGMPIKACA 145
G+ G+P++
Sbjct: 82 AGWDTHGLPVELEV 95
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 48.0 bits (113), Expect = 8e-06
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVK 1267
G D + + ++G + + +G +L KMSKS+GN + + ++
Sbjct: 362 GIDQTRGWFNSLHQLGVMLFGSIA---FKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR 418
Query: 1268 KFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
KF AD +R + S D F ++ V+
Sbjct: 419 KFGADALRWYIYVSAPPEADRRFGPNLVRETVR 451
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 46.1 bits (108), Expect = 3e-05
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 15/161 (9%)
Query: 931 DIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSA 990
G + + ++ + +P
Sbjct: 298 PFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYP-----------FEH 346
Query: 991 KDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKM 1049
+++ + D + + ++G + + +G +L KM
Sbjct: 347 EEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIA---FKNVICHGLILDEKGQKM 403
Query: 1050 SKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVES 1090
SKS+GN + + ++KF AD +R + S D F +
Sbjct: 404 SKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPN 444
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 71.6 bits (174), Expect = 2e-13
Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 8/213 (3%)
Query: 89 KFFTTFPFPYMNGRLHLGHTF-SLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147
++ T PY NG +H GH + + VR+ RLKG+ V+F G G PI A K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 148 LKREMESFG--FPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQ 205
R F Q + D + K S+
Sbjct: 63 EGRSPREIVDEFHEQIKITFQRAKISFDFFGR-TELPIHYKLSQEFFLKAYENGHLVKKV 121
Query: 206 SLGLEDDEIRKFADASHWLDHFPPLAVQD----LRSIGIHVDWRRTFITTDSNPFFDSFV 261
+ + + F + P ++ +R P + V
Sbjct: 122 TKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMV 181
Query: 262 RWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDH 294
+ I + + P D +
Sbjct: 182 LSWIEEGLEERAITRDLNWGIPVPLDEEDMKGK 214
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 71.6 bits (174), Expect = 2e-13
Identities = 37/298 (12%), Positives = 80/298 (26%), Gaps = 17/298 (5%)
Query: 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIE 866
++G P A ++ + + + + L +++ ++
Sbjct: 51 EHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLK 110
Query: 867 SLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVW-----------DYVFFK 915
+ + + A+ F + + K
Sbjct: 111 AYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEK 170
Query: 916 AAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMW 975
P + + ++ E ++ ++ +Y+ +
Sbjct: 171 QPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISIT 230
Query: 976 PRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMW--- 1032
+ G L + T I+ + D I H F+ A + E
Sbjct: 231 IEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAE 290
Query: 1033 ---PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1087
P I AN +L L K S S + + E + F AD +R L D++F
Sbjct: 291 WNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDF 348
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 62.7 bits (151), Expect = 1e-10
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW------PRGIRANGHLLLNSAKMSKSE 1256
V +GKD I H F+ A + E P I AN +L L K S S
Sbjct: 255 RVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSR 314
Query: 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
+ + E + F AD +R L D++F
Sbjct: 315 NWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDF 348
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 69.6 bits (169), Expect = 1e-12
Identities = 17/79 (21%), Positives = 33/79 (41%)
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
+ + + A S F P P + G LH+GH S + +R+ R++G ++
Sbjct: 18 EKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWL 77
Query: 132 FGFHCTGMPIKACADKLKR 150
G G+ + ++L
Sbjct: 78 PGTDHAGIATQVVVERLLL 96
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 55.7 bits (133), Expect = 3e-08
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLT 1263
+ G D++ ++ G+ P + + +G +L KMSKS+GN +
Sbjct: 331 VLVTGYDILFLWVSRMEVSGYHFMGERP---FKTVLLHGLVLDEKGQKMSKSKGNVIDPL 387
Query: 1264 EAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKF 1302
E V+++ AD +R L +D + A + F
Sbjct: 388 EMVERYGADALRFALIYLATGGQDIRLDLRWLEMA-RNF 425
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 50.3 bits (119), Expect = 1e-06
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 1008 DLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKF 1066
D++ ++ G+ P + + +G +L KMSKS+GN + E V+++
Sbjct: 337 DILFLWVSRMEVSGYHFMGERP---FKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERY 393
Query: 1067 SADGMRLCLADSGDSVEDANF 1087
AD +R L +D
Sbjct: 394 GADALRFALIYLATGGQDIRL 414
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 66.9 bits (162), Expect = 5e-12
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
K T PY NG +HLGH + + VR+ R++G V F G PI A +L
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 62
Query: 149 KREMESF 155
E
Sbjct: 63 GITPEQM 69
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 58.4 bits (140), Expect = 3e-09
Identities = 38/292 (13%), Positives = 85/292 (29%), Gaps = 18/292 (6%)
Query: 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIE 866
+G P A + + + + + + Y + E
Sbjct: 50 AHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSR 109
Query: 867 SLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCR-- 924
+ I + + + G F + E + FF F +
Sbjct: 110 LKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHF---FFDLPSFSEMLQAW 166
Query: 925 -----VPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGI 979
+ + + M+ F+ + + +W D P +
Sbjct: 167 TRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSF 226
Query: 980 RANGHLLLNSA---KDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGI 1036
+ +S + ++ + + D++ H F+ + +P
Sbjct: 227 KNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLF--- 283
Query: 1037 RANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL-ADSGDSVEDANF 1087
+G++ +N AKMSKS G F+ + + F AD +R A ++D +
Sbjct: 284 -VHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDL 334
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 58.4 bits (140), Expect = 3e-09
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTL 1262
+Y +GKD++ H F+ + +P +G++ +N AKMSKS G F+
Sbjct: 250 ELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLF----VHGYVTVNGAKMSKSRGTFIKA 305
Query: 1263 TEAVKKFSADGMRLCL-ADSGDSVEDANF 1290
+ + F AD +R A ++D +
Sbjct: 306 STWLNHFDADSLRYYYTAKLSSRIDDIDL 334
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 66.9 bits (162), Expect = 8e-12
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 48/145 (33%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFRE 71
L E ++QE+WD E Y + +
Sbjct: 20 LPNKEPQIQEKWDAEDQYHKALE------------------------------------- 42
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
++ ++ F PY NG LH+GH + +F VR+ ++G +
Sbjct: 43 -----------KNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYV 91
Query: 132 FGFHCTGMPIKACADKLKREMESFG 156
G+ G+PI+ K + +
Sbjct: 92 PGWDTHGLPIEQALTKKGVDRKKMS 116
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 56.5 bits (135), Expect = 2e-08
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLT 1263
L G D + I A G P + + ++G ++ KMSKS GN +
Sbjct: 357 MYLEGSDQYRGWFNSSITTSVATRGVSP---YKFLLSHGFVMDGEGKKMSKSLGNVIVPD 413
Query: 1264 EAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
+ VK+ AD RL ++ S D + D + +
Sbjct: 414 QVVKQKGADIARLWVS-STDYLADVRISDEILKQTSD 449
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 53.4 bits (127), Expect = 1e-07
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 1007 SDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK 1065
SD + I A G P + + ++G ++ KMSKS GN + + VK+
Sbjct: 362 SDQYRGWFNSSITTSVATRGVSP---YKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ 418
Query: 1066 FSADGMRLCLADSGDSVEDANFVES 1090
AD RL ++ S D + D +
Sbjct: 419 KGADIARLWVS-STDYLADVRISDE 442
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 64.3 bits (155), Expect = 4e-11
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
F+ T P Y+N HLGH ++ +F R++RL G R F G G + A
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 149 KREMESFGFPP 159
+ ++F
Sbjct: 64 GEDPKAFVDRV 74
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 61.6 bits (148), Expect = 3e-10
Identities = 37/286 (12%), Positives = 73/286 (25%), Gaps = 5/286 (1%)
Query: 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIE 866
++GE ++AA R A Y + L +
Sbjct: 51 EHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKK 110
Query: 867 SLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAP-----FPP 921
IY Y + + F E + P
Sbjct: 111 VYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWL 170
Query: 922 KCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRA 981
+ + + I ++ L DL + + + DE + A
Sbjct: 171 QEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDA 230
Query: 982 NGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGH 1041
+ + + + TF+ + ++ T + M+
Sbjct: 231 LLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFL 290
Query: 1042 LLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1087
L + KMSK+ GN + ++K+ D +R L +D
Sbjct: 291 LGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPV 336
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 50.4 bits (119), Expect = 9e-07
Identities = 14/77 (18%), Positives = 26/77 (33%)
Query: 1214 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1273
++ T + M+ L + KMSK+ GN + ++K+ D
Sbjct: 260 DILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDA 319
Query: 1274 MRLCLADSGDSVEDANF 1290
+R L +D
Sbjct: 320 LRYYLLREIPYGQDTPV 336
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 53.4 bits (127), Expect = 8e-08
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 1215 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1274
+ +G ++++ KMSKS GNF T+ + +K + A+ +
Sbjct: 230 LMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETV 289
Query: 1275 RLCLADSGDSVEDANFVESMADAA 1298
R L SG N+ E A
Sbjct: 290 RYFLM-SGHYRSQLNYSEENLKQA 312
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 53.0 bits (126), Expect = 1e-07
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 1012 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
+ +G ++++ KMSKS GNF T+ + +K + A+ +
Sbjct: 230 LMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETV 289
Query: 1072 RLCL 1075
R L
Sbjct: 290 RYFL 293
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 48.2 bits (113), Expect = 5e-06
Identities = 23/252 (9%), Positives = 50/252 (19%), Gaps = 7/252 (2%)
Query: 830 EVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTF 889
EVR + A + + +
Sbjct: 56 EVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEK 115
Query: 890 RGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSG 949
G + L E + + + +I ++
Sbjct: 116 LGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYC 175
Query: 950 KDLIQNHLTFFIY---IHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLF 1006
+ + + E W N L + +H
Sbjct: 176 PEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAG 235
Query: 1007 SDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN--SAKMSKSEGNFLTLTEAVK 1064
D + ++ + + KMS S+GN + L++ +
Sbjct: 236 KDHLVAGSSYDTGKEIIKEVYGK--EAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE 293
Query: 1065 KFSADGMRLCLA 1076
+R A
Sbjct: 294 VLEPGLVRFIYA 305
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 47.4 bits (111), Expect = 8e-06
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 1194 CPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN--SAK 1251
P+ ++ GKD + ++ + + K
Sbjct: 220 WPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGK--EAPLSLMYEFVGIKGQKGK 277
Query: 1252 MSKSEGNFLTLTEAVKKFSADGMRLCLA 1279
MS S+GN + L++ + +R A
Sbjct: 278 MSGSKGNVILLSDLYEVLEPGLVRFIYA 305
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 39.3 bits (90), Expect = 0.003
Identities = 15/222 (6%), Positives = 52/222 (23%), Gaps = 9/222 (4%)
Query: 82 VRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPI 141
+R + + + +G +H+G+ L R KG V +
Sbjct: 11 IRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFR 70
Query: 142 KACADKLKREMESFG---------FPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVA 192
K + + + G + + + +++ + + + S+
Sbjct: 71 KVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYK 130
Query: 193 KAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTD 252
+ ++ + + + K+ + + + +
Sbjct: 131 RGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGG 190
Query: 253 SNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDH 294
+ + +K R +
Sbjct: 191 WKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFE 232
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 39.5 bits (91), Expect = 5e-04
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 1098 RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGF 1157
R+Y + +E L S + D+ +++ +K+ + EALR
Sbjct: 4 RIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL------EALRFNT 57
Query: 1158 FELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQN 1215
+ + + +L P PH+AE ++ D +
Sbjct: 58 AIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFE 115
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1618 | |||
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.97 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.86 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 99.84 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.81 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.8 | |
| d1udza_ | 179 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.78 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.77 | |
| d1ffya2 | 194 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.75 | |
| d1wkaa1 | 143 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.69 | |
| d1h3na2 | 192 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.62 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.56 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.51 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.49 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.48 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.45 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.41 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.41 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.41 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.4 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.35 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.34 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.33 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.31 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.29 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.27 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.21 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.07 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 99.02 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 98.91 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 98.84 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 98.83 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 98.57 | |
| d1wkaa1 | 143 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 97.19 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 97.16 | |
| d1ffya2 | 194 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 97.09 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 96.71 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 96.1 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 95.82 | |
| d1h3na2 | 192 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 94.81 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 92.56 | |
| d1udza_ | 179 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 92.38 |
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-62 Score=609.27 Aligned_cols=187 Identities=24% Similarity=0.400 Sum_probs=162.2
Q ss_pred cccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC
Q psy5309 5 GTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS 84 (1618)
Q Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1618)
.|-|+.+++++|++||++|+++++|++..+.+
T Consensus 13 ~f~~~~~~~~~E~~~~~~W~~~~~~~~~~~~~------------------------------------------------ 44 (450)
T d1ffya3 13 DFPMRGGLPNKEPQIQEKWDAEDQYHKALEKN------------------------------------------------ 44 (450)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHT------------------------------------------------
T ss_pred CCCCCCChHHHHHHHHHHHHHCCCcccccccc------------------------------------------------
Confidence 34589999999999999999999998765431
Q ss_pred CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCC
Q psy5309 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSE 164 (1618)
Q Consensus 85 ~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~ 164 (1618)
+++++|+|++|||||||.||||||++++++|+++||+||+||+|++++||||||+|||..+++. |..+
T Consensus 45 ~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~-------~~~~----- 112 (450)
T d1ffya3 45 KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK-------GVDR----- 112 (450)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH-------TCCS-----
T ss_pred CCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhh-------CCcc-----
Confidence 2467899999999999999999999999999999999999999999999999999999887752 2110
Q ss_pred CCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccc
Q psy5309 165 DTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDW 244 (1618)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw 244 (1618)
...+.++..+. +++++.++++.++++++++|+++||
T Consensus 113 ------------------------------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lg~~~D~ 148 (450)
T d1ffya3 113 ------------------------------------------KKMSTAEFREK--CKEFALEQIELQKKDFRRLGVRGDF 148 (450)
T ss_dssp ------------------------------------------TTTCHHHHHHH--HHHHHHHHHHHHHHHHHTTTCCSCT
T ss_pred ------------------------------------------ccccHHHHhhh--cchhhhhhhhhHHHHHHHHhhhccc
Confidence 01122333333 4688899999999999999999999
Q ss_pred cCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhc
Q psy5309 245 RRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRA 297 (1618)
Q Consensus 245 ~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~ 297 (1618)
+++|.|++ |.|.+.|+++|.+|+++|+||+|.++|+|||+|+|+++++|++
T Consensus 149 ~~~~~T~~--~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~ 199 (450)
T d1ffya3 149 NDPYITLK--PEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE 199 (450)
T ss_dssp TSCEETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred cccccccc--HHHHHHHHHHHHHHHHcCCeeccccccccccccCccccccccc
Confidence 99999999 8899999999999999999999999999999999999887754
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.7e-51 Score=505.59 Aligned_cols=180 Identities=21% Similarity=0.380 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCe
Q psy5309 11 YLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKF 90 (1618)
Q Consensus 11 ~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 90 (1618)
.+.+||+|||++|+++++|+... .++++|
T Consensus 8 ~~~~~e~~~~~~w~~~~~~~~~~---------------------------------------------------~~~~~f 36 (425)
T d1ivsa4 8 DPKSVEPKWAEKWAKNPFVANPK---------------------------------------------------SGKPPF 36 (425)
T ss_dssp CGGGTHHHHHHHHHSSCCCCCTT---------------------------------------------------CCSCEE
T ss_pred ChHHHHHHHHHHHHHCCcccCCC---------------------------------------------------CCCCcE
Confidence 56789999999999988775432 137899
Q ss_pred EEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy5309 91 FTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQT 170 (1618)
Q Consensus 91 ~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~ 170 (1618)
+|+.|||||||+||||||++++++|+++||+||+||+|++++|+|+||+||+..+++... ..|..
T Consensus 37 ~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~---~~~~~------------ 101 (425)
T d1ivsa4 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLL---KEGKT------------ 101 (425)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHH---TTTCC------------
T ss_pred EEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhc---ccCCC------------
Confidence 999999999999999999999999999999999999999999999999999999887421 11111
Q ss_pred CCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceee
Q psy5309 171 DKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFIT 250 (1618)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T 250 (1618)
.. +++ .+.... .+..++.++.+.++.+|++||+++||+..+.|
T Consensus 102 -----------------~~----------------~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t 144 (425)
T d1ivsa4 102 -----------------RH----------------DLG--REKFLE--RVWQWKEESGGTILKQLKRLGASADWSREAFT 144 (425)
T ss_dssp -----------------GG----------------GST--TTHHHH--HHHHHHHHHHHHHHHHHHHTTCCCCGGGCEET
T ss_pred -----------------hH----------------Hhc--HHHHHH--HHHHHHHHHHHHHHHHHHHhCCccCcchhhcc
Confidence 00 011 111111 13466777788999999999999999999999
Q ss_pred cCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchh
Q psy5309 251 TDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHD 295 (1618)
Q Consensus 251 ~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~E 295 (1618)
++ +.|.+.++++|.+|.++|++|++.++++|||.|+|++++++
T Consensus 145 ~~--~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~~~l~~~~ 187 (425)
T d1ivsa4 145 MD--EKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE 187 (425)
T ss_dssp TS--HHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEECCGGG
T ss_pred cc--hhhhhhhHHHHhhhhccCcccccceeecccccccccccccc
Confidence 88 78999999999999999999999999999999999887754
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.4e-52 Score=519.93 Aligned_cols=169 Identities=25% Similarity=0.475 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCeE
Q psy5309 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKFF 91 (1618)
Q Consensus 12 ~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 91 (1618)
..++|++||++|+++++|+..... .++++|+
T Consensus 6 p~~iE~~~~~~W~~~~~~~~~~~~-------------------------------------------------~~~~~~~ 36 (494)
T d1h3na3 6 PHAIEAKWQRFWEEKGFMKAKDLP-------------------------------------------------GGRGKQY 36 (494)
T ss_dssp CTTHHHHHHHHHHHHTTTCCCSSC-------------------------------------------------CTTCEEE
T ss_pred HHHHHHHHHHHHHHCCCcccCccc-------------------------------------------------cCCCCeE
Confidence 567999999999999999654322 2478899
Q ss_pred EeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy5309 92 TTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTD 171 (1618)
Q Consensus 92 v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~ 171 (1618)
|+.|||||||.||||||++++++|+++||+||+|++|+|++||||||+|||..|++. |.
T Consensus 37 i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~-------~~-------------- 95 (494)
T d1h3na3 37 VLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKF-------GV-------------- 95 (494)
T ss_dssp EEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHT-------TC--------------
T ss_pred EEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHh-------CC--------------
Confidence 999999999999999999999999999999999999999999999999999998861 11
Q ss_pred CCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceeec
Q psy5309 172 KDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITT 251 (1618)
Q Consensus 172 ~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T~ 251 (1618)
+|++|++++...|++++++||+++||++.|+|+
T Consensus 96 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~ 128 (494)
T d1h3na3 96 -----------------------------------------------HPKDWTYANIRQAKESLRLMGILYDWDREVTTC 128 (494)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTT
T ss_pred -----------------------------------------------ChHHHHHHHHHHhHHHHHhcCcccCCCCceecC
Confidence 135677788889999999999999999999999
Q ss_pred CCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccC
Q psy5309 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASG 299 (1618)
Q Consensus 252 d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~ 299 (1618)
| +.|.+.++++|.+|+++|+||++.++|+|||+|+|+|||+||+.+
T Consensus 129 d--~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~~t~l~~~ev~~~ 174 (494)
T d1h3na3 129 E--PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEG 174 (494)
T ss_dssp S--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETT
T ss_pred C--ccccchHHHHHHHhhhCCcEEeeeEEEEeecCccceecchhcccC
Confidence 9 779999999999999999999999999999999999999998654
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.1e-51 Score=510.51 Aligned_cols=184 Identities=21% Similarity=0.356 Sum_probs=154.0
Q ss_pred hhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCe
Q psy5309 11 YLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKF 90 (1618)
Q Consensus 11 ~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 90 (1618)
+++++|++||++|+++++|++.++++ +++++|
T Consensus 9 ~~~~~e~~~~~~w~~~~~~~~~~~~~------------------------------------------------~~~~~f 40 (452)
T d1ilea3 9 NFPKLEEEVLAFWKREKIFQKSVENR------------------------------------------------KGGPRY 40 (452)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHT------------------------------------------------TTSCBC
T ss_pred CHHHHHHHHHHHHHHCCCccCCcccc------------------------------------------------CCCCCE
Confidence 67999999999999999999876542 247889
Q ss_pred EEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy5309 91 FTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQT 170 (1618)
Q Consensus 91 ~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~ 170 (1618)
+|+.|||||||+|||||+++++++|+++||+||+||+|++++|+|+||+||+..|++. .+..
T Consensus 41 ~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG~~i~~~a~~~------~~~~------------ 102 (452)
T d1ilea3 41 TVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK------LGLK------------ 102 (452)
T ss_dssp CBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHH------TTCC------------
T ss_pred EEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCCHHHHHHHHHh------hccc------------
Confidence 9999999999999999999999999999999999999999999999999999998752 1111
Q ss_pred CCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceee
Q psy5309 171 DKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFIT 250 (1618)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T 250 (1618)
...++.....++ +.+. +.++..++.+.+.+++.++|++.||.+.|.|
T Consensus 103 ----------------~~~~~~~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T 149 (452)
T d1ilea3 103 ----------------SKREIEAYGIER---------------FNQA--CRESVFTYEKEWEAFTERIAYWVDLEDAYAT 149 (452)
T ss_dssp ----------------SHHHHHHHCHHH---------------HHHH--HHHHTTTTHHHHTTHHHHTTCCCEEEEEEET
T ss_pred ----------------cccchhHHHHHH---------------HHHH--HhhHHhhhhhhHHHHHhhhccccccchhhhc
Confidence 011122222221 2222 3577788888999999999999999999999
Q ss_pred cCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchh
Q psy5309 251 TDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHD 295 (1618)
Q Consensus 251 ~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~E 295 (1618)
++ |.|.+.++++|.+|+++|++|.+..++.||+.|++.+++.+
T Consensus 150 ~~--~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~ 192 (452)
T d1ilea3 150 LE--PTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHE 192 (452)
T ss_dssp TS--HHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHH
T ss_pred CC--hHHHHHHHHHHHHHHhcCCcccccccchhhccccccccccc
Confidence 99 88999999999999999999999999999999987776644
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=2.6e-40 Score=397.67 Aligned_cols=131 Identities=24% Similarity=0.302 Sum_probs=110.6
Q ss_pred CCCeEEeCCCCCCCCcchhhhhch-hhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFS-LSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~-~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
|.+|+|+.|||||||+|||||+++ ++.+|+++||+||+||+|++++|+|++|++|+..|++. |+
T Consensus 1 ~~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~-------g~-------- 65 (361)
T d1rqga2 1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE-------GR-------- 65 (361)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-------TC--------
T ss_pred CceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHc-------CC--------
Confidence 578999999999999999999775 67799999999999999999999999999999888751 22
Q ss_pred CCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccccc
Q psy5309 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWR 245 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~ 245 (1618)
+ +.++++.+...+.+++..+++.++
T Consensus 66 --------------------------------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~-- 90 (361)
T d1rqga2 66 --------------------------------------------S---------PREIVDEFHEQIKITFQRAKISFD-- 90 (361)
T ss_dssp --------------------------------------------C---------HHHHHHHHHHHHHHHHHHHTCCCS--
T ss_pred --------------------------------------------C---------HHHHHHHHHHhhcccccccccccc--
Confidence 1 234456666777888999886544
Q ss_pred CceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCC
Q psy5309 246 RTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQ 289 (1618)
Q Consensus 246 ~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t 289 (1618)
..+.|.+ +.+...+++.|..++++|+++++..+++||+.|++
T Consensus 91 ~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (361)
T d1rqga2 91 FFGRTEL--PIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKM 132 (361)
T ss_dssp EEEETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTB
T ss_pred ccccccc--chhhhhhhhhhhhccccCceeeeeeeeecccccce
Confidence 5566666 77999999999999999999999999999998744
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-37 Score=366.71 Aligned_cols=135 Identities=23% Similarity=0.385 Sum_probs=116.7
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+|+.|||||||+||||||++++++|+++||+|++||+|.+++|+||||.+|+..|.+. |++
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~-------g~~--------- 65 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL-------GIT--------- 65 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-------TSC---------
T ss_pred CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHc-------CCC---------
Confidence 6899999999999999999999999999999999999999999999999999999888651 221
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+.+++.++...+.++++.||+ ||...
T Consensus 66 ----------------------------------------------------~~~~~~~~~~~~~~~~~~l~i--~~~~~ 91 (350)
T d1pfva2 66 ----------------------------------------------------PEQMIGEMSQEHQTDFAGFNI--SYDNY 91 (350)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHTTC--CCSEE
T ss_pred ----------------------------------------------------HHHHHHhHHHHHHHHHHHcCC--CcccC
Confidence 123445556677788888885 66677
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccch
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDH 294 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~ 294 (1618)
+.|.+ |.+.+.++++|.+|+++|++|++...++|||.|++.++|.
T Consensus 92 ~~t~~--~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~ 136 (350)
T d1pfva2 92 HSTHS--EENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDR 136 (350)
T ss_dssp EESSS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGG
T ss_pred CCcCC--cccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCc
Confidence 77777 8899999999999999999999999999999998887663
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=1e-30 Score=311.79 Aligned_cols=135 Identities=22% Similarity=0.351 Sum_probs=112.7
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
+++|+|+.|||||||+|||||+|+++++|+++||+||+||+|.+++|+|++|+||+..|.+. |+.
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~-------g~~-------- 66 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA-------GED-------- 66 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH-------TSC--------
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHc-------CCC--------
Confidence 46799999999999999999999999999999999999999999999999999999887751 211
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccC
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRR 246 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~ 246 (1618)
+.+++..+...+++.++.+|+..|+.
T Consensus 67 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~- 92 (348)
T d2d5ba2 67 -----------------------------------------------------PKAFVDRVSGRFKRAWDLLGIAYDDF- 92 (348)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHHTTCCCSEE-
T ss_pred -----------------------------------------------------HHHhhhhHHHHHHHHHHhcCccccce-
Confidence 22334455566778899999888732
Q ss_pred ceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccc
Q psy5309 247 TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMD 293 (1618)
Q Consensus 247 ~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd 293 (1618)
+.+.. +.+...+++++.++.++|++|++...+.||+.|++.+++
T Consensus 93 -~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 136 (348)
T d2d5ba2 93 -IRTTE--ERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTE 136 (348)
T ss_dssp -EETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCT
T ss_pred -eeccc--chhhHHHHHHHHHHHhhCccccccccccccccccceecc
Confidence 22333 678899999999999999999999999999999766544
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.86 E-value=4.1e-22 Score=228.81 Aligned_cols=151 Identities=18% Similarity=0.165 Sum_probs=125.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcc
Q psy5309 1356 SQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVC 1433 (1618)
Q Consensus 1356 ~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~ 1433 (1618)
..+..+|+|+|++++.+.++++++|++|+|++|++.++ +|+. ++++|++++|
T Consensus 28 ~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~-~F~~~~ls~~Y~~~~K------------------------- 81 (273)
T d1ffya1 28 SELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQ-NFINVELSNFYLDYGK------------------------- 81 (273)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHCCCCCCHHHHHH-------------------------
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH-hhhhccchHHHHhhcc-------------------------
Confidence 45778999999999999999999999999999999985 9984 7777776555
Q ss_pred hhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHH
Q psy5309 1434 PHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1513 (1618)
Q Consensus 1434 P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEei 1513 (1618)
|+||++.. +.. .|+ .+|++|.++|+.++++||||+||+|||+
T Consensus 82 --------drly~~~~----------ds~-----------~r~---------~~~~~l~~il~~l~~~laPilPf~~Eei 123 (273)
T d1ffya1 82 --------DILYIEQR----------DSH-----------IRR---------SMQTVLYQILVDMTKLLAPILVHTAEEV 123 (273)
T ss_dssp --------HHHTTSCT----------TCH-----------HHH---------HHHHHHHHHHHHHHHHHTTTSHHHHHHH
T ss_pred --------ccccCCCC----------CHH-----------HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 222 222 5778899999999999999999999999
Q ss_pred HHHcCC--CCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCC
Q psy5309 1514 YQLLGK--KGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGG 1574 (1618)
Q Consensus 1514 w~~l~~--~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~ 1574 (1618)
|++++. .+|++...||.....++.+...++.+++ +|+.++++++.+|+.+.++.+++
T Consensus 124 ~~~~~~~~~~sv~~~~~p~~~~~~~~l~~~~~~~~~----ir~~v~~~ie~~R~~~~I~~sle 182 (273)
T d1ffya1 124 WSHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMN----LRDDVNRALETARNEKVIGKSLE 182 (273)
T ss_dssp HTTSTTCSSSSGGGSCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSCSSGGG
T ss_pred HHhccccccchhhhcccccccccCHhHHHHHHHHHH----HHHHHHHHHHHHHHhcccccccc
Confidence 999874 4699999999988778888888777776 99999999999999986665544
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1.3e-21 Score=229.62 Aligned_cols=119 Identities=11% Similarity=0.035 Sum_probs=89.8
Q ss_pred CCCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCC
Q psy5309 84 SSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPS 163 (1618)
Q Consensus 84 ~~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e 163 (1618)
+.++.+++|+ + |+|||+|||||+|+++++|+++|++|+.|++|.+.+|+|+||.||...|++. |+.
T Consensus 19 ~~~~~~~yv~-G-ptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~-------~~~----- 84 (315)
T d1li5a2 19 HAGEVGMYVC-G-ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN-------GES----- 84 (315)
T ss_dssp STTEEEEEEC-C-CBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT-------TCC-----
T ss_pred CCCeEEEEec-C-CcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhh-------hhc-----
Confidence 3456677775 6 5999999999999999999999999999999999999999999999888752 211
Q ss_pred CCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc
Q psy5309 164 EDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD 243 (1618)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D 243 (1618)
+.++++++.....+++.++++..+
T Consensus 85 --------------------------------------------------------~~e~~~~~~~~~~~~~~~~~i~~~ 108 (315)
T d1li5a2 85 --------------------------------------------------------FVAMVDRMIAEMHKDFDALNILRP 108 (315)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred --------------------------------------------------------cccccccchhhhhhhHHhcCCCCC
Confidence 223445555667788999998765
Q ss_pred ccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 244 WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 244 w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
-. +.+.. .....+...+.+|..+|.+|..
T Consensus 109 ~~--~~~~~---~~~~e~~~~~~~l~~~~~~~~~ 137 (315)
T d1li5a2 109 DM--EPRAT---HHIAEIIELTEQLIAKGHAYVA 137 (315)
T ss_dssp SB--CCBGG---GCHHHHHHHHHHHHHTTSEEEC
T ss_pred cE--EEecc---hhhhhhhhHHHHhhccCceecc
Confidence 22 22222 2445566778888888877643
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=3.7e-20 Score=198.87 Aligned_cols=138 Identities=21% Similarity=0.262 Sum_probs=112.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcch
Q psy5309 1355 GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCP 1434 (1618)
Q Consensus 1355 ~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P 1434 (1618)
...++.+|+|+++++++++++++++|++|+|++|++.++ +|+ +.++|.
T Consensus 29 ~~~l~~~D~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~-~f~-----~~~l~~-------------------------- 76 (180)
T d1ilea1 29 PEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALR-DFV-----VEDLSQ-------------------------- 76 (180)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHH-----HHHSST--------------------------
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHh-----HhhhhH--------------------------
Confidence 445678999999999999999999999999999999986 776 234443
Q ss_pred hhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHH
Q psy5309 1435 HVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVY 1514 (1618)
Q Consensus 1435 ~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw 1514 (1618)
|| .+..|+|+++.+++..|+ .++++|.++|..+++|||||+||+|||+|
T Consensus 77 -----------------~Y-----~e~~K~~l~~~~~~~~~~---------~~~~~l~~il~~~l~llaP~~PfitEEiw 125 (180)
T d1ilea1 77 -----------------WY-----VRRNRRRFWKNEDALDRE---------AAYATLYEALVLVATLAAPFTPFLAEVLW 125 (180)
T ss_dssp -----------------TT-----HHHHHHHHHTCTTTSSTT---------HHHHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred -----------------HH-----HHhccchhhhhhhhhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 267777877655444443 46778889999999999999999999999
Q ss_pred HHcCC------CCceEeccCCCCC--CCCHHHHHHHHHHHHHHHHHHHH
Q psy5309 1515 QLLGK------KGSIVKARWPEGG--PIDDILVRSSSYLMEAAHAFRLQ 1555 (1618)
Q Consensus 1515 ~~l~~------~~sv~~~~~p~~~--~~~~~l~~~~~~~~~~i~~~R~~ 1555 (1618)
+.++. ++||+.++||+++ .+|+.+++.++.+++++..+|+.
T Consensus 126 ~~l~~~~~~~~~~sv~~~~wP~~~~~~~d~~~~~~~~~v~~vi~~iR~~ 174 (180)
T d1ilea1 126 QNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAA 174 (180)
T ss_dssp HHHTTTTSTTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccccchHHHHhCCCCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 98852 4799999999976 45899999999999988888754
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=3.1e-19 Score=197.60 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=122.0
Q ss_pred hhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhcc
Q psy5309 1334 RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEG 1411 (1618)
Q Consensus 1334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~ 1411 (1618)
|++|..+|+....++..+ .....+..|+|+++++++++++++++|++|+|++|+++++ +|+. ++++|+++
T Consensus 3 KlwNa~rF~~~~~~~~~~--~~~~~~~~Dkwil~~l~~~i~~v~~~~~~y~f~~a~~~l~-~F~~~~l~d~Y~e~----- 74 (218)
T d1ivsa2 3 KLYNAARFVLLSREGFQA--KEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVY-ELVWSEFCDWYLEA----- 74 (218)
T ss_dssp HHHHHHHHHHHHSSSCCC--CBCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHTTTTTHHHH-----
T ss_pred HHHHHHHHHHhCcCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHhhhhhHHHHHHH-----
Confidence 566666666554443222 2234456799999999999999999999999999999985 8872 56666644
Q ss_pred cchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHH
Q psy5309 1412 GMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLV 1491 (1618)
Q Consensus 1412 ~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1491 (1618)
+|.|++++. ...+.+|
T Consensus 75 --------------------------------------------------~k~~~~~~~--------------~~~~~~l 90 (218)
T d1ivsa2 75 --------------------------------------------------AKPALKAGN--------------AHTLRTL 90 (218)
T ss_dssp --------------------------------------------------HHHHHHTTB--------------HHHHHHH
T ss_pred --------------------------------------------------Hhhhccccc--------------ccccchh
Confidence 455544322 1356788
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHcCCCCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1492 LRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1492 ~~~l~~~~~llaPi~P~~aEeiw~~l~~~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
.++++.+++||||||||+|||+|+.+++++|++.+.||+++..|+.++..++.+++++.++|+.+.+
T Consensus 91 ~~~l~~~l~ll~P~~PfitEeiw~~l~~~~si~~~~wP~~~~~d~~~~~~~~~~~~ii~~iR~~R~e 157 (218)
T d1ivsa2 91 EEVLAVLLKLLHPMMPFLTSELYQALTGKEELALEAWPEPGGRDEEAERAFEALKQAVTAVRALKAE 157 (218)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHCCSCGGGSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCccchhhhHHHhhhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988899999999999888999999999999999999986553
|
| >d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=6.6e-20 Score=195.68 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=38.7
Q ss_pred CeeEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecc
Q psy5309 304 PQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSC 361 (1618)
Q Consensus 304 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~ 361 (1618)
||.|+ +|++.+.. ....++.+++||||||||||||+||||||+..|+.+..
T Consensus 1 Psi~V--~F~l~~~~-----~~~~~~~~l~iwTTtPwTLp~n~avav~p~~~y~~~~~ 51 (179)
T d1udza_ 1 PSVYV--RFPLKEPK-----KLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV 51 (179)
T ss_dssp CEEEE--EEEBSCGG-----GGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEE
T ss_pred CeEEE--EEEecCCc-----cccCCCceEEEEeCCcchhhcceeeecCCCCcceEEEE
Confidence 67775 45554321 11235689999999999999999999999999998754
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=6.3e-20 Score=228.44 Aligned_cols=62 Identities=27% Similarity=0.259 Sum_probs=57.9
Q ss_pred ceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHH
Q psy5309 1238 GIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAV 1299 (1618)
Q Consensus 1238 ~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~ 1299 (1618)
.+..||+|+| +|+|||||+||||||.++|++||||+|||||+++++.++|++||++.++++.
T Consensus 431 ~~~~~g~v~d~~g~KMSKSlGNVIdP~~iI~~YGADalRl~ll~~s~~g~di~~s~~~ieg~~ 493 (494)
T d1h3na3 431 RPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAW 493 (494)
T ss_dssp EECTTSSEEEEEEEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHH
T ss_pred cccCCccEEeCCceeCCCCCCCcCCHHHHHHHhCHHHHHHHHHhcCCcccCCCcChhcCeecc
Confidence 4567999999 9999999999999999999999999999999999999999999999988743
|
| >d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.75 E-value=7.7e-21 Score=206.55 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=31.1
Q ss_pred CCcEEEEeecCccccccCceEEeCCCCCceeecc
Q psy5309 328 KPVFLVAATLRPETMYGQTNAWVRPDMAYIALSC 361 (1618)
Q Consensus 328 ~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~ 361 (1618)
++.+|+||||||||||||+||||||+..|+.+..
T Consensus 23 ~~~~l~iwTTtPwTlp~n~alav~p~~~y~~~~~ 56 (194)
T d1ffya2 23 ADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNV 56 (194)
T ss_dssp TTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCT
T ss_pred CCCeEEEecCCCchhhhhhheeeCCccccceeee
Confidence 4679999999999999999999999999988854
|
| >d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=1.4e-17 Score=169.59 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=25.0
Q ss_pred CcEEEEeecCccccccCceEEeCCCCC
Q psy5309 329 PVFLVAATLRPETMYGQTNAWVRPDMA 355 (1618)
Q Consensus 329 ~~~l~i~TTrPeTl~g~~avaV~P~~~ 355 (1618)
+.+|+||||||||||||+||||||++.
T Consensus 13 ~~~i~i~TTrP~Tl~g~~avav~P~d~ 39 (143)
T d1wkaa1 13 GGFIEIATVRPETVFADQAIAVHPEDE 39 (143)
T ss_dssp SCEEEEEESCGGGGGGCCEEEECTTCT
T ss_pred CCEEEEEECCcchhcCceEEEEecccc
Confidence 459999999999999999999999974
|
| >d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=7.1e-17 Score=174.57 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=35.5
Q ss_pred eEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCCCceee
Q psy5309 306 EYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAL 359 (1618)
Q Consensus 306 ~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~ 359 (1618)
.-..++|++ .+++.+|+||||||||||||+||||||++.|+..
T Consensus 3 ~g~~V~F~v-----------~~~~~~l~iwTTtPwTlpgn~avav~p~~~y~~~ 45 (192)
T d1h3na2 3 EGAEILFPV-----------EGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLE 45 (192)
T ss_dssp EEEEEEEEB-----------TTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHH
T ss_pred ceEEEEEEe-----------cCCCcEEEEEeCCcchhhhccEEEECCchhHHHH
Confidence 344567765 2356799999999999999999999999999875
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.56 E-value=2.4e-16 Score=193.19 Aligned_cols=87 Identities=23% Similarity=0.231 Sum_probs=76.1
Q ss_pred CCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcC
Q psy5309 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVED 1287 (1618)
Q Consensus 1209 gkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D 1287 (1618)
|+|+ +++||.+++..+....+..||++|++||||+| +|+|||||+||||+|.++|++||||+|||||+++ ++++|
T Consensus 361 G~Di---~r~w~~~~~~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s~-~~~~D 436 (450)
T d1ffya3 361 GSDQ---YRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSST-DYLAD 436 (450)
T ss_dssp EGGG---GTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTS-CTTSC
T ss_pred Ccch---hhHHHHHHHHHHHHhcCCCCcceEEEcceEECCCCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHcC-CCCCC
Confidence 6675 56788776666655567789999999999999 9999999999999999999999999999999975 77899
Q ss_pred cccCHHHHHHHH
Q psy5309 1288 ANFVESMADAAV 1299 (1618)
Q Consensus 1288 ~~fs~~~l~~~~ 1299 (1618)
++||++.|+++.
T Consensus 437 ~~fs~~~l~~~~ 448 (450)
T d1ffya3 437 VRISDEILKQTS 448 (450)
T ss_dssp EECCHHHHHHHH
T ss_pred cCcCHHHHHHhh
Confidence 999999888754
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=2e-14 Score=144.98 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcch
Q psy5309 1355 GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCP 1434 (1618)
Q Consensus 1355 ~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P 1434 (1618)
...++..|+|+++++++++++|+++|++|+|++|++.++ +|++..+.|..
T Consensus 25 ~~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~l~-~f~n~l~~~~~----------------------------- 74 (128)
T d1h3na1 25 AEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALM-EFLNALYEYRK----------------------------- 74 (128)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHH-----------------------------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-Hhhcccchhhh-----------------------------
Confidence 345667899999999999999999999999999999974 87642211111
Q ss_pred hhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHH
Q psy5309 1435 HVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVY 1514 (1618)
Q Consensus 1435 ~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw 1514 (1618)
++ ....++.++++.+++|||||+||+|||+|
T Consensus 75 -----------------------------~~--------------------~~~~~~~~~l~~ll~ll~P~~P~itEeiw 105 (128)
T d1h3na1 75 -----------------------------DR--------------------PVTPVYRTAIRYYLQMLFPFAPHLAEELW 105 (128)
T ss_dssp -----------------------------HS--------------------CSCHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred -----------------------------hh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 22335667899999999999999999999
Q ss_pred HHcCCCCceEeccCCCCC
Q psy5309 1515 QLLGKKGSIVKARWPEGG 1532 (1618)
Q Consensus 1515 ~~l~~~~sv~~~~~p~~~ 1532 (1618)
+.|+ .+||+.+.||+.+
T Consensus 106 ~~l~-~~si~~~~WP~~d 122 (128)
T d1h3na1 106 HWFW-PDSLFEAGWPELD 122 (128)
T ss_dssp TTTC-SSCHHHHCCCCCC
T ss_pred HHhC-CCccccCCCCCcC
Confidence 9997 4679999999976
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=4.7e-14 Score=150.73 Aligned_cols=134 Identities=14% Similarity=0.110 Sum_probs=104.4
Q ss_pred HhhHHHHHHHHHHHHHhcc----cCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH-HHHHHHHHHHH
Q psy5309 1096 ILRLYTFIEWVKEILATQS----TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFE-LQAARDKYREL 1170 (1618)
Q Consensus 1096 ~~kl~N~~~~l~~~l~~~~----~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~-l~~~~n~Yi~~ 1170 (1618)
+++|||..+|++.+.+..+ ...+...+...|+|++++++.++++++++|++|+|++|++.+... +.+.|++|++.
T Consensus 2 ~~klWN~~rF~~~~~~~~~~~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~~~Y~e~ 81 (180)
T d1ilea1 2 FLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRR 81 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHH
T ss_pred CcHHHHHHHHHHHhccccCCCccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhhHHHHHh
Confidence 6899999999987654322 111223456789999999999999999999999999999996533 45699999999
Q ss_pred hccc---------CcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1171 TAAE---------GGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1171 ~k~~---------~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
.|+. ....+.++.+++..++++|+|||||+|||+|+.++..... .--.|+|.+.||..+
T Consensus 82 ~K~~l~~~~~~~~~~~~~~~l~~il~~~l~llaP~~PfitEEiw~~l~~~~~~---~~~~sv~~~~wP~~~ 149 (180)
T d1ilea1 82 NRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRL---EAKESVHLADWPEAD 149 (180)
T ss_dssp HHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTST---TSCSSGGGSCCCCCC
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cccchHHHHhCCCCC
Confidence 8861 1345678999999999999999999999999999765321 112367888888644
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=1.9e-15 Score=185.33 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=71.0
Q ss_pred ccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCccc
Q psy5309 1212 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290 (1618)
Q Consensus 1212 ~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~f 1290 (1618)
..++|...+++.+.. +..+|++|++|||+++ +|+|||||+||+|+|.+++++||||+|||||++.+++++|++|
T Consensus 367 ~~~fh~l~~~~~l~~-----~~~~~~~v~~hg~iL~~~G~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~~~~~~~d~~F 441 (452)
T d1ilea3 367 RGWFNSLHQLGVMLF-----GSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRF 441 (452)
T ss_dssp GTHHHHHHHHHHHHH-----SSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEEC
T ss_pred chhhHHHHHhHHHHc-----CCCCCCeEEEeeEEECCCCcccCCCCCCCcCHHHHHHHcCcHHHHHHHHhcCCCCCCCCc
Confidence 334555555544432 4577999999999998 9999999999999999999999999999999998899999999
Q ss_pred CHHHHHHHHH
Q psy5309 1291 VESMADAAVK 1300 (1618)
Q Consensus 1291 s~~~l~~~~~ 1300 (1618)
|++.+++.++
T Consensus 442 s~~~~~e~~~ 451 (452)
T d1ilea3 442 GPNLVRETVR 451 (452)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHhHHhc
Confidence 9998887553
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=5.9e-15 Score=179.48 Aligned_cols=90 Identities=22% Similarity=0.225 Sum_probs=79.0
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~ 1284 (1618)
+..|+|+..+|...++..+.+.. +..|++.+++|||+++ +|+|||||+||+|+|.+++++||+|+|||||++.++.
T Consensus 332 ~~~G~Di~~~h~~~~~a~~~~~~---~~~p~~~v~~hg~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~~L~~~~~~ 408 (425)
T d1ivsa4 332 LVTGYDILFLWVSRMEVSGYHFM---GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATG 408 (425)
T ss_dssp EEEEGGGTTTTHHHHHHHHHHHS---SSCSBSEEEEECCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCT
T ss_pred EEEEehhhhHHHHHHHHHHHHhc---CCCccceEEEcceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHHHHHhcCCC
Confidence 45699998888887876655543 4567899999999998 9999999999999999999999999999999999999
Q ss_pred CcCcccCHHHHHHH
Q psy5309 1285 VEDANFVESMADAA 1298 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~ 1298 (1618)
++|++||++.+++.
T Consensus 409 ~~d~dF~~~~~~~~ 422 (425)
T d1ivsa4 409 GQDIRLDLRWLEMA 422 (425)
T ss_dssp TCCEECCHHHHHHH
T ss_pred CCCCccCHHHhhhc
Confidence 99999999987663
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.41 E-value=1.9e-13 Score=149.59 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=101.3
Q ss_pred CCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy5309 1315 GDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFF 1394 (1618)
Q Consensus 1315 gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~ 1394 (1618)
||| +||+.+|.+ ++|++.. |........|++++++++.+++++.++|++|+|++|++.++
T Consensus 5 GNl---~~Rv~~~i~--------------k~~~g~v--p~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~- 64 (210)
T d1rqga1 5 GNF---VHRALTFVN--------------RYFDGVV--PERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVM- 64 (210)
T ss_dssp HHH---HHHHHHHHH--------------HHSTTBC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred HHH---HHHHHHHHH--------------HHCCCcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-
Confidence 555 899887754 7888753 44556778899999999999999999999999999999984
Q ss_pred HHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccch
Q psy5309 1395 ELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETED 1451 (1618)
Q Consensus 1395 ~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~ 1451 (1618)
+++..+|.|++..+||... ..+++++++|.+|++|+||||++|++|+++||++....
T Consensus 65 ~l~~~~N~yi~~~~PW~l~k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~~~~~~ 130 (210)
T d1rqga1 65 SLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKR 130 (210)
T ss_dssp HHHHHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSCCC
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCcccc
Confidence 9999999999999999752 22788999999999999999999999999999986543
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=1.3e-13 Score=151.82 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH-HHHHHHHHHHHHhccc-
Q psy5309 1097 LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFF-ELQAARDKYRELTAAE- 1174 (1618)
Q Consensus 1097 ~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~-~l~~~~n~Yi~~~k~~- 1174 (1618)
|||||..+|++.+..+.. +........|+|++++++.++.+++++|++|+|++|++.+.. .+.++|++|++..++.
T Consensus 2 NKlwNa~rF~~~~~~~~~--~~~~~~~~~Dkwil~~l~~~i~~v~~~~~~y~f~~a~~~l~~F~~~~l~d~Y~e~~k~~~ 79 (218)
T d1ivsa2 2 NKLYNAARFVLLSREGFQ--AKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPAL 79 (218)
T ss_dssp HHHHHHHHHHHHHSSSCC--CCBCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhCcCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhHHHHHHHHhhhc
Confidence 799999999977654322 222344667999999999999999999999999999999543 3357999999998872
Q ss_pred ---CcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCC
Q psy5309 1175 ---GGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGD 1230 (1618)
Q Consensus 1175 ---~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~ 1230 (1618)
....+.++..+++.+++||+|||||+|||+|+.++++. ++|.+.||.
T Consensus 80 ~~~~~~~~~~l~~~l~~~l~ll~P~~PfitEeiw~~l~~~~---------si~~~~wP~ 129 (218)
T d1ivsa2 80 KAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTGKE---------ELALEAWPE 129 (218)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCCS---------CGGGSCCCC
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccc---------ccccccCCc
Confidence 23456788899999999999999999999999986542 456677775
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.41 E-value=1.1e-14 Score=172.86 Aligned_cols=69 Identities=26% Similarity=0.269 Sum_probs=62.4
Q ss_pred CcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhh
Q psy5309 1234 MWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSAD 1305 (1618)
Q Consensus 1234 ~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~ 1305 (1618)
.+|+.+.+|||++++|+|||||+||+|+|.|++++||+|+|||||++.++.++|++||++.+++ ++|++
T Consensus 292 ~~p~~~~~~g~l~~~G~KMSKSlGN~I~~~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~---~~n~~ 360 (361)
T d1rqga2 292 NLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKV---RINEE 360 (361)
T ss_dssp CCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHH---HHHHT
T ss_pred CCCCEEEEeeeEEeCCEecCCCCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCCCCCCCHHHHHH---HhccC
Confidence 5689999999999999999999999999999999999999999999999999999999986544 55644
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=4.2e-13 Score=135.02 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=92.3
Q ss_pred HhhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy5309 1096 ILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG 1175 (1618)
Q Consensus 1096 ~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~ 1175 (1618)
++|+||++...................+..|+|++++++.++++|+++|++|+|++|++. ++++.+.++.|...
T Consensus 2 lnklw~~v~~~~~~~~~~~~~~~~~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~-l~~f~n~l~~~~~~----- 75 (128)
T d1h3na1 2 LNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAA-LMEFLNALYEYRKD----- 75 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHH-----
T ss_pred cHHHHHHHHHHHhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-HHHhhcccchhhhh-----
Confidence 578888765544444332222223345678999999999999999999999999999998 67777766666543
Q ss_pred cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1176 GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1176 ~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
.....++.++++.+++||+|||||+|||+|+.||++ +++.+.||..+
T Consensus 76 ~~~~~~~~~~l~~ll~ll~P~~P~itEeiw~~l~~~----------si~~~~WP~~d 122 (128)
T d1h3na1 76 RPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPD----------SLFEAGWPELD 122 (128)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTSHHHHHHHHTTTCSS----------CHHHHCCCCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------ccccCCCCCcC
Confidence 223356778899999999999999999999999865 35677888644
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=4.7e-13 Score=138.76 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=95.3
Q ss_pred cccC-CCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHH
Q psy5309 1311 LADS-GDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEAL 1389 (1618)
Q Consensus 1311 l~n~-gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~ 1389 (1618)
|+|. ||| +||+.+|.. +.|++..+. ...... +.++.++.+++.++|++|+|++|+
T Consensus 1 LaN~lGNl---v~R~~~~~~--------------k~~~g~vP~--~~~~~~-----~~~~~~~~~~~~~~~e~~~~~~al 56 (152)
T d2d5ba1 1 LADDLGNL---VQRTRAMLF--------------RFAEGRIPE--PVAGEE-----LAEGTGLAGRLRPLVRELKFHVAL 56 (152)
T ss_dssp CCCCCHHH---HHHHHHHHH--------------HHSTTBCCC--CCCCGG-----GGGGGGHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHH---HHHHHHHHH--------------HHCCCcCCC--CcchHH-----HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444 666 899888754 778875432 222212 356778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhh
Q psy5309 1390 RTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYT 1454 (1618)
Q Consensus 1390 ~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~ 1454 (1618)
+.++ +++..+|.|++..+||... ..+++++++|.+|++|+||||++|++|+++||++...+|..
T Consensus 57 ~~i~-~~~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~~~~~~~ 129 (152)
T d2d5ba1 57 EEAM-AYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEE 129 (152)
T ss_dssp HHHH-HHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSSCCGGG
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCccCCHHH
Confidence 9985 9999999999999999761 12788999999999999999999999999999987655544
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=6.4e-14 Score=165.72 Aligned_cols=93 Identities=26% Similarity=0.417 Sum_probs=75.0
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhcc-CCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADS-GDS 1284 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~-~~~ 1284 (1618)
+..|+|+...|...++....+. +..++..+.+|||++.+|+|||||+||+|+|.+++++||+|+|||||++. .+.
T Consensus 253 h~~G~D~~~~h~~~~~~~~~a~----~~~~~~~~~~~g~l~~~G~KMSKS~GN~i~~~dll~~~g~D~lR~~l~s~~~~~ 328 (350)
T d1pfva2 253 HFIGKDIVYFHSLFWPAMLEGS----NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSR 328 (350)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHT----TBCCCSEEEEECCEEETTBSCCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSS
T ss_pred eccchhhHHHHHhhHHHHhhhc----CCCccceEEecccEEECCeEccCcCCCCCCHHHHHHHCCHHHHHHHHHhhCCCC
Confidence 4457887777777666543332 34678899999999999999999999999999999999999999999985 455
Q ss_pred CcCcccCHHHHHHHHHHhhhh
Q psy5309 1285 VEDANFVESMADAAVKKFSAD 1305 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~ 1305 (1618)
.+|++||++.+ +++.|++
T Consensus 329 ~~d~dfs~~~~---~~~~N~~ 346 (350)
T d1pfva2 329 IDDIDLNLEDF---VQRVNAD 346 (350)
T ss_dssp CCCEEECHHHH---HHHHHHH
T ss_pred CCCCCCCHHHH---HHHHHHH
Confidence 68999999854 4466655
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.33 E-value=2.5e-13 Score=154.82 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=100.8
Q ss_pred HhhHHHHHHHHHHHHHhccc---CCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHh
Q psy5309 1096 ILRLYTFIEWVKEILATQST---LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ-AARDKYRELT 1171 (1618)
Q Consensus 1096 ~~kl~N~~~~l~~~l~~~~~---~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~-~~~n~Yi~~~ 1171 (1618)
++|+||+++|++++++++.. ..+..++..+|+|++++++.++.++.++|++|+|++|++.+..++. .++++|++.+
T Consensus 1 YRKirNt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y~~~~ 80 (273)
T d1ffya1 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG 80 (273)
T ss_dssp HHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred CchHHHHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHHHhhc
Confidence 46899999999999876431 1123456789999999999999999999999999999999654444 5889999999
Q ss_pred ccc----------CcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC-ccccccchhh
Q psy5309 1172 AAE----------GGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD-LIQNHLTFFI 1221 (1618)
Q Consensus 1172 k~~----------~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd-~~svh~~~f~ 1221 (1618)
|+. ..+.++++.+++..++++|+|||||+|||+|+.+..+ ..++|..+||
T Consensus 81 Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~~~~~~sv~~~~~p 141 (273)
T d1ffya1 81 KDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMP 141 (273)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTCSSSSGGGSCCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccc
Confidence 971 1245678999999999999999999999999998543 3455554444
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=2.6e-12 Score=151.36 Aligned_cols=171 Identities=13% Similarity=0.062 Sum_probs=109.8
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
+++.+|.+.+|||||||||||+|+.+++|+++|.++..||+|...+++++.|+||..++..+.+........
T Consensus 7 ~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~-------- 78 (348)
T d1f7ua2 7 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALV-------- 78 (348)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHH--------
T ss_pred CCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccc--------
Confidence 678999999999999999999999999999999999999999999999999999998887753321000000
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHhh------------hhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHH
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKAG------------SAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQD 234 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~~------------~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~ 234 (1618)
..+.. +-+.....+.+.. ......++++.+.....+..++. ....+..++.+.++
T Consensus 79 --------~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~~~~~ 145 (348)
T d1f7ua2 79 --------KDPIH---HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIW--KRFREFSIEKYIDT 145 (348)
T ss_dssp --------HCHHH---HHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHH
T ss_pred --------cccch---hHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHHHHH
Confidence 00000 0000000000000 00001122333322223333333 35567778899999
Q ss_pred HHHcCCccc-ccCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEe
Q psy5309 235 LRSIGIHVD-WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFS 284 (1618)
Q Consensus 235 l~~lGi~~D-w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~ 284 (1618)
+.+||+.+| |..+- ..+......+...|.++|+++...-.+.++
T Consensus 146 ~~~l~i~fD~~~~Es------~~~~~~~~~v~~~L~~~~~~~~~~ga~~~~ 190 (348)
T d1f7ua2 146 YARLNIKYDVYSGES------QVSKESMLKAIDLFKEKGLTHEDKGAVLID 190 (348)
T ss_dssp HHHTTCCCSEEEEGG------GCCHHHHHHHHHHHHHTTCEEEETTEEEEE
T ss_pred HHHHhhhhhhhhhcc------cccccchHHHHHHHHhhccccccCCccccc
Confidence 999999999 44332 124445567889999999998865555544
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=1.6e-13 Score=161.65 Aligned_cols=65 Identities=25% Similarity=0.263 Sum_probs=60.2
Q ss_pred CCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHH
Q psy5309 1233 EMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA 1297 (1618)
Q Consensus 1233 ~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~ 1297 (1618)
..+++.+.+||++++ +|+|||||+||+|+|.+++++||+|+|||||++..|+++|++||++.|++
T Consensus 278 ~~~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~~l~~~~p~~~d~dFs~~~~~~ 343 (348)
T d2d5ba2 278 IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRT 343 (348)
T ss_dssp CCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHH
T ss_pred cCCCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 457889999999999 99999999999999999999999999999999988999999999986554
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=5.3e-12 Score=132.08 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=94.2
Q ss_pred chhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy5309 1319 EDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA 1398 (1618)
Q Consensus 1319 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~ 1398 (1618)
|.+||+.+|.+ ++|+|..+. ...|..+++.+..+.+++.++|++|+|++|++.+ +++++
T Consensus 3 NL~~R~~~~i~--------------k~~~g~vp~------~~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i-~~~~~ 61 (162)
T d1pfva1 3 NLASRNAGFIN--------------KRFDGVLAS------ELADPQLYKTFTDAAEVIGEAWESREFGKAVREI-MALAD 61 (162)
T ss_dssp HHHHHHHHHHH--------------HHSTTBCCS------SCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHH-HHHHH
T ss_pred chHHHHHHHHH--------------HhcCCcCCC------CCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHH
Confidence 55889888755 888875322 2458889999999999999999999999999998 49999
Q ss_pred HHHHHHHhhhhcccc-----------hhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccc
Q psy5309 1399 ARDKYRELTAAEGGM-----------HRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKE 1448 (1618)
Q Consensus 1399 ~~n~Y~~~~~~~~~~-----------~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~ 1448 (1618)
.+|.|++..+||... ..+++++++|.+|++|+||||++|++|+++||++.
T Consensus 62 ~~Nkyi~~~~PWkl~k~~~~~~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~~ 122 (162)
T d1pfva1 62 LANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTEL 122 (162)
T ss_dssp HHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCC
Confidence 999999999999741 12678999999999999999999999999999864
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.21 E-value=1.4e-11 Score=134.48 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=99.4
Q ss_pred HhhHHHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5309 1096 ILRLYTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAA 1173 (1618)
Q Consensus 1096 ~~kl~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~ 1173 (1618)
++.++|+++|++.++++. +.+|........|.++++.++.++.++.++|++|+|++|++. ++.+.+.+|+|++..+|
T Consensus 1 vN~lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~-i~~l~~~~N~yi~~~~P 79 (210)
T d1rqga1 1 VNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKR-VMSLASFGNRYFDHKQP 79 (210)
T ss_dssp TTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 367999999999999874 345555566788999999999999999999999999999999 69999999999999988
Q ss_pred cC----c-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCc
Q psy5309 1174 EG----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212 (1618)
Q Consensus 1174 ~~----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~ 1212 (1618)
|. . ....++.++++.++.+|+||||++|+++|.+||.+.
T Consensus 80 W~l~k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~~~ 127 (210)
T d1rqga1 80 WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDE 127 (210)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCS
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCc
Confidence 52 1 123456789999999999999999999999999763
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.07 E-value=3.5e-11 Score=142.73 Aligned_cols=159 Identities=11% Similarity=0.083 Sum_probs=100.8
Q ss_pred CCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy5309 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDT 166 (1618)
Q Consensus 87 ~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~ 166 (1618)
.++.+|.+.+|||||||||||+|+.+++|+++|.++..||+|...+++++.|+||-..+..++ .++... +.
T Consensus 6 ~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~----~~~~~~--~~--- 76 (370)
T d1iq0a2 6 PGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALR----HYGLTW--DG--- 76 (370)
T ss_dssp EEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHH----HTTCCC--CS---
T ss_pred CCeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHH----Hhcccc--cc---
Confidence 468999999999999999999999999999999999999999999999999999987765542 233321 00
Q ss_pred CCCCCCCCCCchhcccccCcchHHHHHh-hhhHH---HHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcc
Q psy5309 167 EPQTDKDDDDPVIKDKSKGKKSKAVAKA-GSAKY---QWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHV 242 (1618)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~~ak~-~~~~~---~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~ 242 (1618)
.+.+. .+.|.......+. ...+. ..+.++.+... +.++.....+..++.+|+++|+.+
T Consensus 77 -------~~~~~---~~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~--------~~~~~~~~~l~~~~~~l~~l~v~f 138 (370)
T d1iq0a2 77 -------KEKYD---HFAGRAYVRLHQDPEYERLQPAIEEVLHALERG--------ELREEVNRILLAQMATMHALNARY 138 (370)
T ss_dssp -------SSCHH---HHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTT--------TTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred -------ccchh---hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhhhhccceee
Confidence 00000 0111111111100 00010 01111111110 112334556677889999999999
Q ss_pred c-ccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 243 D-WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 243 D-w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
| |..+-.. .+...+..++..|.++|.+|++
T Consensus 139 D~~~~Es~l-----~~~~~~~~~i~~l~~~~~~~~~ 169 (370)
T d1iq0a2 139 DLLVWESDI-----VRAGLLQKALALLEQSPHVFRP 169 (370)
T ss_dssp SEEEEHHHH-----HHTTHHHHHHHHHTTSTTEECC
T ss_pred ceeeeeccc-----ccccchhhhHhhhhhccceeec
Confidence 9 4433211 2344678888999999998864
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2.8e-11 Score=140.64 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=55.7
Q ss_pred ccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHH
Q psy5309 1236 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAV 1299 (1618)
Q Consensus 1236 p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~ 1299 (1618)
++.+..|||++.+|+|||||+||+|+|.++++.||+|++||||++. .+.+|++||++.|++..
T Consensus 251 ~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~-~~~s~ldFs~e~l~~a~ 313 (315)
T d1li5a2 251 VNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG-HYRSQLNYSEENLKQAR 313 (315)
T ss_dssp EEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSS-CTTSCEEECHHHHHHHH
T ss_pred ccEEEEEEEEecCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcC-CCCCCCCcCHHHHHHHh
Confidence 4445567999999999999999999999999999999999999985 67799999999887744
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=7.1e-10 Score=114.40 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy5309 1097 LRLYTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAE 1174 (1618)
Q Consensus 1097 ~kl~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~ 1174 (1618)
+.++|+++|+..++.+. +.+|...... .+..+..+++++.++|++|+|++|++. ++.+++.+|.|++..+||
T Consensus 3 N~lGNlv~R~~~~~~k~~~g~vP~~~~~~-----~~~~~~~~~~~~~~~~e~~~~~~al~~-i~~~~~~~N~yi~~~~PW 76 (152)
T d2d5ba1 3 DDLGNLVQRTRAMLFRFAEGRIPEPVAGE-----ELAEGTGLAGRLRPLVRELKFHVALEE-AMAYVKALNRYINEKKPW 76 (152)
T ss_dssp CCCHHHHHHHHHHHHHHSTTBCCCCCCCG-----GGGGGGGHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCCCcchH-----HHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 46899999999998764 2333222221 235667889999999999999999998 799999999999999885
Q ss_pred Cc------c---hHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1175 GG------M---HRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1175 ~~------~---~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
.. . ...+++++++.++++|+||||++|++||+.||-+
T Consensus 77 ~l~k~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~ 122 (152)
T d2d5ba1 77 ELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 122 (152)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCC
Confidence 21 1 2234568899999999999999999999999965
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=4.2e-09 Score=109.63 Aligned_cols=108 Identities=15% Similarity=0.219 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC--
Q psy5309 1100 YTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG-- 1175 (1618)
Q Consensus 1100 ~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~-- 1175 (1618)
-|+++|+.+++++. +.++ ....|..+.+.+..+.+++.++|++|+|++|++. ++.+++.+|.|++..+||.
T Consensus 2 ~NL~~R~~~~i~k~~~g~vp----~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~-i~~~~~~~Nkyi~~~~PWkl~ 76 (162)
T d1pfva1 2 VNLASRNAGFINKRFDGVLA----SELADPQLYKTFTDAAEVIGEAWESREFGKAVRE-IMALADLANRYVDEQAPWVVA 76 (162)
T ss_dssp HHHHHHHHHHHHHHSTTBCC----SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHT
T ss_pred cchHHHHHHHHHHhcCCcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhhhhhc
Confidence 37888988888774 2222 2346888999999999999999999999999999 7999999999999999852
Q ss_pred --c-------chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCc
Q psy5309 1176 --G-------MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212 (1618)
Q Consensus 1176 --~-------~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~ 1212 (1618)
. ....+++++++.++.+|+||||.+|+++|..||.+.
T Consensus 77 k~~~~~~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~~ 122 (162)
T d1pfva1 77 KQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTEL 122 (162)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSCC
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCC
Confidence 1 112346778899999999999999999999999764
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=3.8e-10 Score=129.18 Aligned_cols=57 Identities=18% Similarity=0.040 Sum_probs=51.4
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHH
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKA 143 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~ 143 (1618)
.++++++. ++|||||+|||||+|+++++|+++||+|+.|++|.+..|+|++|.+++.
T Consensus 16 ~k~~~v~~-~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~ 72 (317)
T d1irxa2 16 EKEKYVVE-SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKV 72 (317)
T ss_dssp CCSEEEEE-EEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCC
T ss_pred CCCeEEEE-CCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhh
Confidence 35556666 6799999999999999999999999999999999999999999998853
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.57 E-value=3.8e-09 Score=120.66 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=39.1
Q ss_pred cEEEEccceeeCC--ccceeccCcccChHHHHhhcCccceEEeecccCccccccccc
Q psy5309 1034 RGIRANGHLLLNS--AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFV 1088 (1618)
Q Consensus 1034 k~v~~hG~vl~~G--~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs 1088 (1618)
...++|||++++| +|||||+||+|+|+++++.||+|++||++++.. +.++++|+
T Consensus 261 ~~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~~~~d~~Ry~~l~~~-~~~~i~FD 316 (317)
T d1irxa2 261 PLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHR-PNKEIKID 316 (317)
T ss_dssp CBCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSC-TTSCEEEC
T ss_pred cEEEEEEEEEECCccccccCCCCccccHHHHHHHCCHHHHHHHhcCCC-CCCCcCCC
Confidence 3457899999865 599999999999999999999999999999874 46777774
|
| >d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.19 E-value=4.6e-05 Score=76.21 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=59.8
Q ss_pred cccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCC----cEEEeccccccc-----cccCCCchhhhHHHHh
Q psy5309 360 SCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERSARN-----MAYQGFTEVEGKINVL 429 (1618)
Q Consensus 360 ~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~~~~-----~~~~g~~~~~a~~~ii 429 (1618)
+|+.+++++|+.+. +.++ +|||+|+++|+|+-.||+.++. .+.++++++... .+|+|+++++|+..|+
T Consensus 51 ~p~~~~~vpi~~~~~V~~~--~GTG~V~~aPaHd~~D~~~~~k~~L~~~~~i~~~G~~~~~~~~~~~~Gl~~~~A~~~Ii 128 (143)
T d1wkaa1 51 IPLTEVWIPILADPAVEKD--FGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAV 128 (143)
T ss_dssp CTTSSCEEEEEECTTCCTT--STTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTTSBBCSTTSCGGGTTSBHHHHHHHHH
T ss_pred ecccceeeceeeccccccc--CCCCeEEEeccCChHHHHHHHhhcccccccccccceEeeecchHhhCCCcHHHHHHHHH
Confidence 46678899998765 7776 9999999999999999887632 233444443321 3699999999999999
Q ss_pred hhhccCcce
Q psy5309 430 LRLTGQVCI 438 (1618)
Q Consensus 430 ~~l~~~~l~ 438 (1618)
+.|+..++.
T Consensus 129 ~~L~~~gll 137 (143)
T d1wkaa1 129 ELFREAGHL 137 (143)
T ss_dssp HHHHHHTCE
T ss_pred HHHHhCCCE
Confidence 999988876
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.16 E-value=0.00015 Score=82.25 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.9
Q ss_pred CCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccc
Q psy5309 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130 (1618)
Q Consensus 95 ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~ 130 (1618)
=+|.|||.||||||+++++...+|| ...|.-+++
T Consensus 6 faPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLR 39 (305)
T d1j09a2 6 IAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVR 39 (305)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEEC
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE
Confidence 3699999999999999999999888 446654544
|
| >d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.09 E-value=9.8e-06 Score=86.12 Aligned_cols=153 Identities=9% Similarity=0.102 Sum_probs=89.9
Q ss_pred HhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccc-------cccCCCCCcEEEEeecCccc
Q psy5309 269 RDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAK-------LCCLDSKPVFLVAATLRPET 341 (1618)
Q Consensus 269 ~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~-------~~~~~~~~~~l~i~TTrPeT 341 (1618)
.++|+++++...+.|.++..|..|+..+....... |..++..- ..+... ...+.... .....+.+
T Consensus 16 ~~~~~~~~~~~l~iwTTtPwTlp~n~alav~p~~~---y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 87 (194)
T d1ffya2 16 DDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELK---YGQYNVNG-EKYIIAEALSDAVAEALDWDK----ASIKLEKE 87 (194)
T ss_dssp SSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCC---CCCCCTTT-TCCCCCHHHHHHHHTTTTCCS----SCCCCCCC
T ss_pred CCCCccCCCCeEEEecCCCchhhhhhheeeCCccc---cceeeeec-chhhhhhhhhhhhhhhhhhcc----eeeeeecc
Confidence 34688899999999999999999998876554321 21111100 000000 00000000 00011112
Q ss_pred cccCceEEeCCCCCce-eecccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCCc----EEEecccccc---
Q psy5309 342 MYGQTNAWVRPDMAYI-ALSCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATGE----VFVCTERSAR--- 412 (1618)
Q Consensus 342 l~g~~avaV~P~~~Y~-~~~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~----~~i~~~~~~~--- 412 (1618)
+.|.. ..+. ..+|+.++.++|+++. +.++ +|||+|+++|+|+..||..+... +.++++++..
T Consensus 88 ~~g~~-------l~~~~~~~p~~~~~~pv~~~d~V~~~--~GTGiVh~aPahg~~D~~~~~~~~l~~~~~Vd~~G~~~~~ 158 (194)
T d1ffya2 88 YTGKE-------LEWVVAQHPFLDRESLVINGDHVTTD--AGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEE 158 (194)
T ss_dssp CCTTT-------CTTCCCBCCTTCCSBCCCCCCSSCCS--SSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTT
T ss_pred ccccc-------ccCccccccccccccceeccceeecc--cCCcceeeecccCcchHHhHHHcCCcccceecccccccCC
Confidence 22110 0011 1245667778877754 7666 99999999999999998887532 2233333321
Q ss_pred ccccCCCchhhhHHHHhhhhccCcce
Q psy5309 413 NMAYQGFTEVEGKINVLLRLTGQVCI 438 (1618)
Q Consensus 413 ~~~~~g~~~~~a~~~ii~~l~~~~l~ 438 (1618)
...|+|+.+++|+.+|++.|+..+++
T Consensus 159 ~~~~~Gl~v~ea~~~Ii~~L~e~g~l 184 (194)
T d1ffya2 159 GGQFEGMFYDKANKAVTDLLTEKGAL 184 (194)
T ss_dssp CSSCSSSCSSHHHHTTGGGSSHHHHC
T ss_pred CCccCCcCHHHhHHHHHHHHHHCCCE
Confidence 24799999999999999999888755
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00078 Score=75.40 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 96 FPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 96 pP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
+|.|||+||||||+++++.=.+|| +..|.-++
T Consensus 8 APsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iL 39 (286)
T d1nzja_ 8 APSPSGELHFGSLIAALGSYLQAR--ARQGRWLV 39 (286)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHH--HTTCEEEE
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEE
Confidence 589999999999999998777666 33554443
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0032 Score=71.67 Aligned_cols=40 Identities=33% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcc
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRV 128 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V 128 (1618)
...++.+=|+ |-|||.|||||++++++.=.+||- ..|.-+
T Consensus 16 ~~~~v~tRFA-PSPTG~LHiG~~rtal~n~l~Ak~--~~G~fi 55 (331)
T d1gtra2 16 KHTTVHTRFP-PEPNGYLHIGHAKSICLNFGIAQD--YKGQCN 55 (331)
T ss_dssp SCSSCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--TTCEEE
T ss_pred CCCeEEEEeC-CCCCCcccHHHHHHHHHHHHHHHH--hCCEEE
Confidence 3455666665 799999999999999998877664 345444
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=95.82 E-value=0.00073 Score=78.57 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=43.2
Q ss_pred cccccccccccccccCCcCCHHHHHHh-------------------------cCcceeeeehhccCCCCcCcccCHHHH
Q psy5309 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKK-------------------------FSADGMRLCLADSGDSVEDANFVESMA 1295 (1618)
Q Consensus 1242 hGfvld~G~KMSKSlGNvI~P~~ii~~-------------------------yGaD~lRl~l~~~~~~~~D~~fs~~~l 1295 (1618)
.|+|+.+|+||||..||+|...++++. .|.+++||.+++. ...+|+.|+++.+
T Consensus 289 ~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~-~~~~~~~Fd~d~~ 366 (370)
T d1iq0a2 289 YETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT-EPKKQIDFRYQEA 366 (370)
T ss_dssp ECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS-CTTSCEEECHHHH
T ss_pred EEEEecCCccccccCCCeeEHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHhhhhheehhHhhc-CCCCCceECHHHh
Confidence 577777899999999999999999986 8999999999998 5668999999864
|
| >d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=94.81 E-value=0.0043 Score=64.91 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=55.8
Q ss_pred cccCCccEEEEecc-cccCccCCCeeEEecCCCCeeEEEcCCC----cEEEecccc-----------------ccccccC
Q psy5309 360 SCLDSKPVFLVAAT-LRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERS-----------------ARNMAYQ 417 (1618)
Q Consensus 360 ~~~~~~~~~iv~~~-~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~-----------------~~~~~~~ 417 (1618)
+|+.++.++|+.+. +.++ +|||+|++.|+|+..||..+.. .+.++...+ .....|.
T Consensus 88 ~p~~~~~vpv~~a~~V~~d--~GTG~Vh~aPahg~~D~~~~~k~~lp~~~vi~~~g~~~~~~~~~~~~~~g~~~ns~~~~ 165 (192)
T d1h3na2 88 NPATGERIPIWTADYVLFG--YGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFD 165 (192)
T ss_dssp CTTTCCEEEEEECTTSCTT--STTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGT
T ss_pred cCCCCCEEEEEeecccccc--cccceEEEecccCcccceeeccccccccccccccccccccccccccccCceEecccccC
Confidence 45578888887765 6665 9999999999998888766421 111111111 0124689
Q ss_pred CCchhhhHHHHhhhhccCccee
Q psy5309 418 GFTEVEGKINVLLRLTGQVCIR 439 (1618)
Q Consensus 418 g~~~~~a~~~ii~~l~~~~l~r 439 (1618)
|+.+++|+..|++.|+..++.|
T Consensus 166 Gl~v~~A~~~Ii~~L~~~glg~ 187 (192)
T d1h3na2 166 GTESEEGKRKVIAWLEEKGLGK 187 (192)
T ss_dssp TCBHHHHHHHHHHHHHHHTSEE
T ss_pred CCcHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999988774
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.012 Score=67.19 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=39.8
Q ss_pred cccccccCCcCCHHHHHHh----------------------------cCcceeeeehhccCCCCcCcccCHHHH
Q psy5309 1250 AKMSKSEGNFLTLTEAVKK----------------------------FSADGMRLCLADSGDSVEDANFVESMA 1295 (1618)
Q Consensus 1250 ~KMSKSlGNvI~P~~ii~~----------------------------yGaD~lRl~l~~~~~~~~D~~fs~~~l 1295 (1618)
.||||.+||+|...+++++ .|.+++||..++. ....++.|+++.+
T Consensus 271 ~kMStR~G~~i~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~ia~~vgv~ai~y~~L~~-~~~~~~~Fd~d~~ 343 (348)
T d1f7ua2 271 QGMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQG-KRINNYEFKWERM 343 (348)
T ss_dssp ESCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS-CTTCCEECCHHHH
T ss_pred ccccccCCCceEHHHHHHHHHHHHHHHHHhccCcCCChhhHHHHHHHhhHHheehhhhhc-CCCCCCEECHHHh
Confidence 3899999999999999975 7899999999998 5669999999854
|
| >d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=92.38 E-value=0.01 Score=61.12 Aligned_cols=148 Identities=15% Similarity=0.049 Sum_probs=81.8
Q ss_pred ccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccc----cccCCCCCcEEEEeecCccccccCceEEe
Q psy5309 275 KYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAK----LCCLDSKPVFLVAATLRPETMYGQTNAWV 350 (1618)
Q Consensus 275 y~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~l~i~TTrPeTl~g~~avaV 350 (1618)
..+...+.|-.+-.|-.++.=+...... .|..++.. +.+... ...+. ...+-++.|..-.-+.|... .
T Consensus 17 ~~~~~l~iwTTtPwTLp~n~avav~p~~---~y~~~~~~--~~~~~~~~~~~~~~~-~~~~~i~~~~~G~~l~g~~~--~ 88 (179)
T d1udza_ 17 LEKASLLIWTTTPWTLPGNVAAAVHPEY---TYAAFQVG--DEALILEEGLGRKLL-GEGTPVLKTFPGKALEGLPY--T 88 (179)
T ss_dssp CSSEEEEEEESCGGGGGGCCEEEECTTS---EEEEEEET--TEEEEEEHHHHHHHH-CTTSCEEEEEEGGGGTTCBB--C
T ss_pred CCCceEEEEeCCcchhhcceeeecCCCC---cceEEEEe--echhhhhhhccceee-eeeeeEEEEEecccceeeEE--E
Confidence 3456788899988887776554443221 34433321 000000 00000 01122344444444443322 2
Q ss_pred CCCCCceeecccCCccEEE-EecccccCccCCCeeEEecCCCCeeEEEcCC--C--cEEEeccccc-cccccCCCchhhh
Q psy5309 351 RPDMAYIALSCLDSKPVFL-VAATLRPETMYGQTNAWVRPDMAYIAFTTAT--G--EVFVCTERSA-RNMAYQGFTEVEG 424 (1618)
Q Consensus 351 ~P~~~Y~~~~~~~~~~~~i-v~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~--~--~~~i~~~~~~-~~~~~~g~~~~~a 424 (1618)
||-. +..++.++| .++.+.++ +|||+||+.|+|+..||+.+. + -+..+++++. ....|+|+..++|
T Consensus 89 ~p~~------~~~~~~~pv~~ad~V~~~--~GTG~Vh~aPahg~~D~~~~~k~gl~i~~~Vd~~G~~~~~~~~Gl~v~dA 160 (179)
T d1udza_ 89 PPYP------QALEKGYFVVLADYVSQE--DGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFREA 160 (179)
T ss_dssp CSSC------CCCSSCCBEEECTTCCSS--SSCSEEEECGGGCHHHHHHHHHTTCCCCCCBCTTSBBCSTTCTTCBHHHH
T ss_pred eecc------cccccceeEEeccccCcc--ccCcceeeeccCCHHHHHHHHhcCCCccccccCcceecccccCCCCHHHh
Confidence 3321 112333444 45667777 999999999999988887752 1 1222233332 2347899999999
Q ss_pred HHHHhhhhccCcce
Q psy5309 425 KINVLLRLTGQVCI 438 (1618)
Q Consensus 425 ~~~ii~~l~~~~l~ 438 (1618)
+..|++.|++.+++
T Consensus 161 ~~~Ii~~L~~~g~L 174 (179)
T d1udza_ 161 NRAILRDLRGRGFL 174 (179)
T ss_dssp HHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHCCCE
Confidence 99999999887765
|